Citrus Sinensis ID: 042938

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWLWKKK
Secondary Structure (PSIPRED)
cHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHcccccccEEEEccEEEcccHHHHHHHHccccHHHHHHcccEEEEccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccEEEEEccccHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHccccccEEEEccEEEEcHHHHHHHHHHcHHHHHHHHHccEEEEccc
Coil and Loop (DISEMBL)
MDMVTRMVNEKPVVIFskseccicfsiqtlicgfganptvyeldqipngpQIERALQQlgcqptvpavfigqrlvggpnqvmSLHVQNELGPLLVRAGAIWLWKKK
Flexible Loop (DISEMBL)
MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWLWKKK
Low Complexity Region (SEG)
MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWLWKKK
Disordered region (IsUnstruct)
********NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWLW***
Disordered Region (DISOPRED)
MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWLWKKK
Disordered Region (DISEMBL)
********NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWLWKKK
Disordered Region (DISPRO)
MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWLWKK*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWLWKKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q9SA68	102	Monothiol glutaredoxin-S1	yes	no	0.962	1.0	0.647	7e-36
Q9LYC8	102	Monothiol glutaredoxin-S6	no	no	0.962	1.0	0.647	2e-34
Q8L8Z8	102	Monothiol glutaredoxin-S2	no	no	0.962	1.0	0.627	5e-34
O23419	102	Monothiol glutaredoxin-S4	no	no	0.962	1.0	0.607	4e-32
O23421	102	Monothiol glutaredoxin-S3	no	no	0.962	1.0	0.598	2e-31
O23420	102	Monothiol glutaredoxin-S5	no	no	0.962	1.0	0.607	2e-31
Q6NLU2	102	Monothiol glutaredoxin-S7	no	no	0.962	1.0	0.578	3e-30
O23417	102	Monothiol glutaredoxin-S8	no	no	0.962	1.0	0.578	6e-30
Q7G8Y5	103	Glutaredoxin-C1 OS=Oryza	yes	no	0.962	0.990	0.533	1e-25
Q0IMV4	103	Putative glutaredoxin-C14	no	no	0.962	0.990	0.524	4e-25

>sp|Q9SA68|GRXS1_ARATH Monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1 PE=3 SV=1

 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 86/102 (84%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           M+ ++ ++ +KPVVIFSK+ CC+  SI++LI G+GAN TVYELD++ NGP+IERAL +LG
Sbjct: 1   MEKISNLLEDKPVVIFSKTSCCMSHSIKSLISGYGANSTVYELDEMSNGPEIERALVELG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           C+PTVPAVFIGQ LVGG NQ+MSL V+N+L  LL RAGAIW+
Sbjct: 61  CKPTVPAVFIGQELVGGANQLMSLQVRNQLASLLRRAGAIWI 102

May only reduce GSH-thiol disulfides, but not protein disulfides.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYC8|GRXS6_ARATH Monothiol glutaredoxin-S6 OS=Arabidopsis thaliana GN=GRXS6 PE=3 SV=1

 Score =  144 bits (363), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 82/102 (80%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           M+ V  +V +KPVVIFSKS CC+  SIQTLI GFGA  TVYELDQ  NG +IE+AL Q+G
Sbjct: 1   MESVRSLVEDKPVVIFSKSSCCMSHSIQTLISGFGAKMTVYELDQFSNGQEIEKALVQMG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           C+P+VPAVFIGQ+ +GG NQVM+L V+N+L  +L RAGAIW+
Sbjct: 61  CKPSVPAVFIGQQFIGGANQVMTLQVKNQLAAMLRRAGAIWV 102

May only reduce GSH-thiol disulfides, but not protein disulfides.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8Z8|GRXS2_ARATH Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=3 SV=1

 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 64/102 (62%), Positives = 81/102 (79%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           MDM+T+MV E+PVVI+SKS CC+  +I+TL+C FGANP VYELD+I  G +IE+AL +LG
Sbjct: 1   MDMITKMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           C P VP VFIG  LVGG N+VMSLH+   L P+L RAGA+W+
Sbjct: 61  CSPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGALWV 102

May only reduce GSH-thiol disulfides, but not protein disulfides.

Arabidopsis thaliana (taxid: 3702)

>sp|O23419|GRXS4_ARATH Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1

 Score =  136 bits (342), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 78/102 (76%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           MD + +M++EK VVIFSK+ CC+  +I+TL   FG NPT+YELD+I  G +IE+AL QLG
Sbjct: 1   MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           C PTVP VFIG +LVGG NQVMSLH+   L P+L R GA+WL
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGALWL 102

May only reduce GSH-thiol disulfides, but not protein disulfides.

Arabidopsis thaliana (taxid: 3702)

>sp|O23421|GRXS3_ARATH Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/102 (59%), Positives = 77/102 (75%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           M+ + +M++EK VVIFSK+ CC+  +I+TL    G NPT+YELD+I  G +IE AL QLG
Sbjct: 1   MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           C PTVP VFIG +LVGG NQVMSLH+   L P+L RAGA+WL
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102

May only reduce GSH-thiol disulfides, but not protein disulfides.

Arabidopsis thaliana (taxid: 3702)

>sp|O23420|GRXS5_ARATH Monothiol glutaredoxin-S5 OS=Arabidopsis thaliana GN=GRXS5 PE=3 SV=1

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 79/102 (77%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           M+ + +M++EK VVIFSK+ CC+  +I+TL   FG NPT+YELD+I  G +IE+AL QLG
Sbjct: 1   MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDFGVNPTIYELDEINIGREIEQALAQLG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           C PTVP VFIG +LVGG NQVMSLH+   L P+L RAGA+WL
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102

May only reduce GSH-thiol disulfides, but not protein disulfides.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NLU2|GRXS7_ARATH Monothiol glutaredoxin-S7 OS=Arabidopsis thaliana GN=GRXS7 PE=3 SV=2

 Score =  129 bits (325), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 76/102 (74%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           M+ + +M +EK +VIFSK+ CC+  +I+TL    G NPT+YELD+I  G +IE+AL QLG
Sbjct: 1   MEKLQKMTSEKSLVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEQALAQLG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           C PTVP VFIG +LVGG NQVMSLH+   L P+L R GA+WL
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRVGALWL 102

May only reduce GSH-thiol disulfides, but not protein disulfides.

Arabidopsis thaliana (taxid: 3702)

>sp|O23417|GRXS8_ARATH Monothiol glutaredoxin-S8 OS=Arabidopsis thaliana GN=GRXS8 PE=3 SV=1

 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 75/102 (73%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           M+ + +M++EK VVIFS + CC+  +I+TL    G NPT+YELD+I  G +IE AL QLG
Sbjct: 1   MEKIQKMISEKSVVIFSNNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEYALAQLG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           C PTVP VFIG +LVGG NQVMSLH+   L P+L R GA+WL
Sbjct: 61  CSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRFGALWL 102

May only reduce GSH-thiol disulfides, but not protein disulfides.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7G8Y5|GRXC1_ORYSJ Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1 PE=3 SV=1

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/103 (53%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQ-L 59
           MD V R+  ++ VVIFS S CC+C ++  L C  G NPTV ELD+ P G ++E+AL + L
Sbjct: 1   MDRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLL 60

Query: 60  GCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           G  P VPAVFIG RLVG  ++VMSLH+   L PLL  AGA+W+
Sbjct: 61  GRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGALWV 103

Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0IMV4|GRC14_ORYSJ Putative glutaredoxin-C14 OS=Oryza sativa subsp. japonica GN=GRXC14 PE=3 SV=2

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 72/103 (69%), Gaps = 1/103 (0%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERA-LQQL 59
           MD V ++ +E+ VVIF+ S CC+C ++  L C  G N  V+ELDQ P G ++ERA L+ L
Sbjct: 1   MDRVMKLASERAVVIFTLSSCCMCHTVTRLFCDLGVNALVHELDQDPRGKEMERALLKLL 60

Query: 60  GCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           G  P VP VFIG +LVGG N++MSLH+  EL P+L  AGA+WL
Sbjct: 61  GRGPPVPVVFIGGKLVGGTNKIMSLHLGGELIPMLKNAGALWL 103

Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
255559302	102	glutaredoxin, grx, putative [Ricinus com	0.962	1.0	0.754	3e-39
224131232	103	glutaredoxin [Populus trichocarpa] gi|22	0.962	0.990	0.728	8e-37
224132412	103	glutaredoxin [Populus trichocarpa] gi|22	0.962	0.990	0.728	3e-36
224132404	102	glutaredoxin [Populus trichocarpa] gi|22	0.962	1.0	0.725	3e-35
319428667	102	glutaredoxin [Phaseolus vulgaris]	0.962	1.0	0.676	4e-35
224131228	102	glutaredoxin [Populus trichocarpa] gi|22	0.962	1.0	0.686	5e-35
224131224	102	glutaredoxin [Populus trichocarpa] gi|22	0.962	1.0	0.686	1e-34
297821208	102	glutaredoxin family protein [Arabidopsis	0.962	1.0	0.676	2e-34
15218675	102	monothiol glutaredoxin-S1 [Arabidopsis t	0.962	1.0	0.647	3e-34
356505522	102	PREDICTED: monothiol glutaredoxin-S6-lik	0.962	1.0	0.666	3e-34

>gi|255559302|ref|XP_002520671.1| glutaredoxin, grx, putative [Ricinus communis] gi|223540056|gb|EEF41633.1| glutaredoxin, grx, putative [Ricinus communis]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 90/102 (88%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           M+MV R+V EKPVVIFSKS CC+  +I++LICGFGANPTVYELD+IPNG QIER L QLG
Sbjct: 1   MEMVNRLVKEKPVVIFSKSSCCMSHTIKSLICGFGANPTVYELDRIPNGQQIERTLMQLG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           CQP+VP+VFIGQ+LVGG  QVMSLHVQN+L PLL+ AGAIW+
Sbjct: 61  CQPSVPSVFIGQKLVGGEKQVMSLHVQNQLIPLLIDAGAIWI 102

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131232|ref|XP_002321033.1| glutaredoxin [Populus trichocarpa] gi|222861806|gb|EEE99348.1| glutaredoxin [Populus trichocarpa]

 Score =  157 bits (397), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 75/103 (72%), Positives = 87/103 (84%), Gaps = 1/103 (0%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERAL-QQL 59
           MDMV R+V ++PVV+FS+S CC+  SI+TLI  FGANPTVYELDQIPNG QIE+AL QQL
Sbjct: 1   MDMVNRLVADRPVVVFSRSTCCMSHSIKTLISSFGANPTVYELDQIPNGKQIEKALVQQL 60

Query: 60  GCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           GCQP+VPAVFIGQ  VGG  QVMSL V+NEL PLL +AGAIW+
Sbjct: 61  GCQPSVPAVFIGQEFVGGDKQVMSLQVRNELAPLLRKAGAIWI 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132412|ref|XP_002321333.1| glutaredoxin [Populus trichocarpa] gi|222862106|gb|EEE99648.1| glutaredoxin [Populus trichocarpa]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/103 (72%), Positives = 86/103 (83%), Gaps = 1/103 (0%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERAL-QQL 59
           MD+V R+V ++PVVIFS+S CC+  SI+TLI  FGANPTVYELDQIPNG QIERAL QQL
Sbjct: 1   MDIVRRLVADRPVVIFSRSTCCMSHSIKTLISSFGANPTVYELDQIPNGKQIERALVQQL 60

Query: 60  GCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           GCQP+VP VFIGQ  VGG  QVMSL V+NELG LL +AGAIW+
Sbjct: 61  GCQPSVPTVFIGQEFVGGDKQVMSLQVRNELGSLLRKAGAIWI 103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132404|ref|XP_002321331.1| glutaredoxin [Populus trichocarpa] gi|222862104|gb|EEE99646.1| glutaredoxin [Populus trichocarpa]

 Score =  152 bits (383), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 86/102 (84%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           MD++  M+ EKPVVIFSKS CC+  SI++LI GFGANPTVYELD+IPNG QIERAL QLG
Sbjct: 1   MDVLNVMIQEKPVVIFSKSSCCMSHSIKSLIRGFGANPTVYELDRIPNGQQIERALVQLG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
              +VPAVFIGQRLVG   QVMSLHVQN+L PLL++AGAIW+
Sbjct: 61  FGQSVPAVFIGQRLVGNERQVMSLHVQNQLVPLLIQAGAIWI 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319428667|gb|ADV56690.1| glutaredoxin [Phaseolus vulgaris]

 Score =  152 bits (383), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 85/102 (83%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           MDM+T MV EKPVVIFSKS CC+  S+ +LI  FGANPTV+ELD++ NG QIE AL Q+G
Sbjct: 1   MDMITSMVAEKPVVIFSKSTCCLSHSMTSLIRSFGANPTVHELDEMANGQQIESALLQMG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           CQP+VPAVFIGQR +GG  ++MSLH++NEL PLL+ AGAIW+
Sbjct: 61  CQPSVPAVFIGQRFIGGSKKIMSLHLRNELIPLLMNAGAIWI 102

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131228|ref|XP_002321032.1| glutaredoxin [Populus trichocarpa] gi|222861805|gb|EEE99347.1| glutaredoxin [Populus trichocarpa]

 Score =  151 bits (381), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 87/102 (85%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           MD+V  M+ EKPVVIFSKS CC+  SI++L+ GFGANPT+Y+LDQIPNG QIERAL QLG
Sbjct: 1   MDVVNVMIQEKPVVIFSKSSCCMSHSIESLMRGFGANPTIYQLDQIPNGQQIERALMQLG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
            + +VPAVFIGQ+L+G   QVMSLH+QN+L PLL++AGAIW+
Sbjct: 61  FRQSVPAVFIGQQLIGNERQVMSLHIQNQLVPLLIQAGAIWI 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131224|ref|XP_002321031.1| glutaredoxin [Populus trichocarpa] gi|222861804|gb|EEE99346.1| glutaredoxin [Populus trichocarpa]

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 86/102 (84%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           MD+V  M+ EKPVVIFSKS CC+  SI++LI GFGANPT+Y+LDQ+PNG QIERAL QLG
Sbjct: 1   MDVVNAMIQEKPVVIFSKSSCCMSHSIESLIRGFGANPTIYQLDQLPNGHQIERALVQLG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
            + +VP VFIGQ+LVG   QVMSLHV+N+L PLL++AGAIW+
Sbjct: 61  FRQSVPVVFIGQKLVGNERQVMSLHVKNQLVPLLIQAGAIWI 102

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821208|ref|XP_002878487.1| glutaredoxin family protein [Arabidopsis lyrata subsp. lyrata] gi|297324325|gb|EFH54746.1| glutaredoxin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/102 (67%), Positives = 84/102 (82%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           M+ V  +V +KPVVIFSKS CC+  SIQTLI GFGA  TVYELDQ  NG +IE+AL Q+G
Sbjct: 1   MESVGSLVADKPVVIFSKSSCCMSHSIQTLISGFGAKMTVYELDQFSNGQEIEKALVQMG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           C+P+VPAVFIGQ+L+GG NQVM+LHV+N+L  LL RAGAIW+
Sbjct: 61  CKPSVPAVFIGQQLIGGANQVMTLHVKNQLAALLRRAGAIWV 102

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218675|ref|NP_171801.1| monothiol glutaredoxin-S1 [Arabidopsis thaliana] gi|75200288|sp|Q9SA68.1|GRXS1_ARATH RecName: Full=Monothiol glutaredoxin-S1; Short=AtGrxS1; AltName: Full=Protein ROXY 16 gi|4587576|gb|AAD25807.1|AC006550_15 Strong similarity to gb|Z49699 glutaredoxin from Ricinus communis [Arabidopsis thaliana] gi|226348220|gb|ACO50426.1| glutaredoxin [Arabidopsis thaliana] gi|332189394|gb|AEE27515.1| monothiol glutaredoxin-S1 [Arabidopsis thaliana]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 86/102 (84%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           M+ ++ ++ +KPVVIFSK+ CC+  SI++LI G+GAN TVYELD++ NGP+IERAL +LG
Sbjct: 1   MEKISNLLEDKPVVIFSKTSCCMSHSIKSLISGYGANSTVYELDEMSNGPEIERALVELG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           C+PTVPAVFIGQ LVGG NQ+MSL V+N+L  LL RAGAIW+
Sbjct: 61  CKPTVPAVFIGQELVGGANQLMSLQVRNQLASLLRRAGAIWI 102

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505522|ref|XP_003521539.1| PREDICTED: monothiol glutaredoxin-S6-like [Glycine max]

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 83/102 (81%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           MD++T MV EKPVVIFSKS CC+  S+ +LI  FGANPTV+ELD++ NG QIE AL  +G
Sbjct: 1   MDVITSMVAEKPVVIFSKSTCCLSHSMTSLIRSFGANPTVHELDEMANGQQIESALLHMG 60

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
           CQP+VPAVFIGQR +GG  ++MSLHV+NEL PLL  AGAIW+
Sbjct: 61  CQPSVPAVFIGQRFIGGSKKIMSLHVRNELVPLLKNAGAIWI 102

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
TAIR|locus:2007554	102	AT1G03020 "AT1G03020" [Arabido	0.962	1.0	0.647	3.2e-33
TAIR|locus:2183013	102	AT5G18600 "AT5G18600" [Arabido	0.962	1.0	0.627	3.7e-32
TAIR|locus:2099157	102	AT3G62930 "AT3G62930" [Arabido	0.962	1.0	0.647	4.7e-32
TAIR|locus:2130564	102	AT4G15680 [Arabidopsis thalian	0.962	1.0	0.607	1.4e-30
TAIR|locus:2130569	102	AT4G15690 [Arabidopsis thalian	0.962	1.0	0.607	4.9e-30
TAIR|locus:2130574	102	AT4G15700 [Arabidopsis thalian	0.962	1.0	0.598	7.9e-30
TAIR|locus:2130554	102	AT4G15670 [Arabidopsis thalian	0.962	1.0	0.578	9.1e-29
TAIR|locus:2130544	102	AT4G15660 [Arabidopsis thalian	0.962	1.0	0.578	1.5e-28
TAIR|locus:2064327	102	AT2G30540 [Arabidopsis thalian	0.886	0.921	0.510	1.6e-22
TAIR|locus:2043423	102	AT2G47880 [Arabidopsis thalian	0.886	0.921	0.510	2.6e-22

TAIR|locus:2007554 AT1G03020 "AT1G03020" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 66/102 (64%), Positives = 86/102 (84%)

Query:     1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
             M+ ++ ++ +KPVVIFSK+ CC+  SI++LI G+GAN TVYELD++ NGP+IERAL +LG
Sbjct:     1 MEKISNLLEDKPVVIFSKTSCCMSHSIKSLISGYGANSTVYELDEMSNGPEIERALVELG 60

Query:    61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
             C+PTVPAVFIGQ LVGG NQ+MSL V+N+L  LL RAGAIW+
Sbjct:    61 CKPTVPAVFIGQELVGGANQLMSLQVRNQLASLLRRAGAIWI 102

GO:0005575 "cellular_component" evidence=ND

GO:0008794 "arsenate reductase (glutaredoxin) activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2183013 AT5G18600 "AT5G18600" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 64/102 (62%), Positives = 81/102 (79%)

Query:     1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
             MDM+T+MV E+PVVI+SKS CC+  +I+TL+C FGANP VYELD+I  G +IE+AL +LG
Sbjct:     1 MDMITKMVMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLG 60

Query:    61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
             C P VP VFIG  LVGG N+VMSLH+   L P+L RAGA+W+
Sbjct:    61 CSPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGALWV 102

GO:0005575 "cellular_component" evidence=ND

GO:0008794 "arsenate reductase (glutaredoxin) activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR|locus:2099157 AT3G62930 "AT3G62930" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 66/102 (64%), Positives = 82/102 (80%)

Query:     1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
             M+ V  +V +KPVVIFSKS CC+  SIQTLI GFGA  TVYELDQ  NG +IE+AL Q+G
Sbjct:     1 MESVRSLVEDKPVVIFSKSSCCMSHSIQTLISGFGAKMTVYELDQFSNGQEIEKALVQMG 60

Query:    61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
             C+P+VPAVFIGQ+ +GG NQVM+L V+N+L  +L RAGAIW+
Sbjct:    61 CKPSVPAVFIGQQFIGGANQVMTLQVKNQLAAMLRRAGAIWV 102

GO:0005575 "cellular_component" evidence=ND

GO:0008794 "arsenate reductase (glutaredoxin) activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2130564 AT4G15680 [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 62/102 (60%), Positives = 78/102 (76%)

Query:     1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
             MD + +M++EK VVIFSK+ CC+  +I+TL   FG NPT+YELD+I  G +IE+AL QLG
Sbjct:     1 MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLG 60

Query:    61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
             C PTVP VFIG +LVGG NQVMSLH+   L P+L R GA+WL
Sbjct:    61 CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGALWL 102

GO:0005737 "cytoplasm" evidence=ISM

GO:0008794 "arsenate reductase (glutaredoxin) activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2130569 AT4G15690 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 62/102 (60%), Positives = 79/102 (77%)

Query:     1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
             M+ + +M++EK VVIFSK+ CC+  +I+TL   FG NPT+YELD+I  G +IE+AL QLG
Sbjct:     1 MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDFGVNPTIYELDEINIGREIEQALAQLG 60

Query:    61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
             C PTVP VFIG +LVGG NQVMSLH+   L P+L RAGA+WL
Sbjct:    61 CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102

GO:0005737 "cytoplasm" evidence=ISM

GO:0008794 "arsenate reductase (glutaredoxin) activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2130574 AT4G15700 [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 61/102 (59%), Positives = 77/102 (75%)

Query:     1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
             M+ + +M++EK VVIFSK+ CC+  +I+TL    G NPT+YELD+I  G +IE AL QLG
Sbjct:     1 MENLQKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLG 60

Query:    61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
             C PTVP VFIG +LVGG NQVMSLH+   L P+L RAGA+WL
Sbjct:    61 CSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGALWL 102

GO:0005737 "cytoplasm" evidence=ISM

GO:0008794 "arsenate reductase (glutaredoxin) activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2130554 AT4G15670 [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 59/102 (57%), Positives = 76/102 (74%)

Query:     1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
             M+ + +M +EK +VIFSK+ CC+  +I+TL    G NPT+YELD+I  G +IE+AL QLG
Sbjct:     1 MEKLQKMTSEKSLVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEQALAQLG 60

Query:    61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
             C PTVP VFIG +LVGG NQVMSLH+   L P+L R GA+WL
Sbjct:    61 CSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRVGALWL 102

GO:0005737 "cytoplasm" evidence=ISM

GO:0008794 "arsenate reductase (glutaredoxin) activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2130544 AT4G15660 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 59/102 (57%), Positives = 75/102 (73%)

Query:     1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
             M+ + +M++EK VVIFS + CC+  +I+TL    G NPT+YELD+I  G +IE AL QLG
Sbjct:     1 MEKIQKMISEKSVVIFSNNSCCMSHTIKTLFLDLGVNPTIYELDEINRGKEIEYALAQLG 60

Query:    61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
             C PTVP VFIG +LVGG NQVMSLH+   L P+L R GA+WL
Sbjct:    61 CSPTVPVVFIGGQLVGGANQVMSLHLNRSLIPMLKRFGALWL 102

GO:0005737 "cytoplasm" evidence=ISM

GO:0008794 "arsenate reductase (glutaredoxin) activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2064327 AT2G30540 [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 48/94 (51%), Positives = 67/94 (71%)

Query:     1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
             MD V RM +EK VVIFSKS CC+ +++Q L    G +PTV+E+D+ P   +IE+AL +LG
Sbjct:     1 MDKVVRMSSEKGVVIFSKSSCCMSYAVQVLFQDLGVHPTVHEIDKDPECREIEKALMRLG 60

Query:    61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
             C   VPA+F+G +L+G  N+VMSLH+   L PL+
Sbjct:    61 CSTPVPAIFVGGKLIGSTNEVMSLHLSGSLVPLV 94

GO:0005737 "cytoplasm" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2043423 AT2G47880 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 48/94 (51%), Positives = 66/94 (70%)

Query:     1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
             MD V RM +EK VVIF+KS CC+C+++Q L       PT++E+D  P+  +IE+AL +LG
Sbjct:     1 MDKVMRMSSEKGVVIFTKSSCCLCYAVQILFRDLRVQPTIHEIDNDPDCREIEKALLRLG 60

Query:    61 CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
             C   VPAVF+G +LVG  N+VMSLH+   L PL+
Sbjct:    61 CSTAVPAVFVGGKLVGSTNEVMSLHLSGSLVPLI 94

GO:0005737 "cytoplasm" evidence=ISM

GO:0008794 "arsenate reductase (glutaredoxin) activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SA68	GRXS1_ARATH	No assigned EC number	0.6470	0.9622	1.0	yes	no
Q7G8Y5	GRXC1_ORYSJ	No assigned EC number	0.5339	0.9622	0.9902	yes	no
Q54GP8	GLRX_DICDI	No assigned EC number	0.3673	0.9245	0.98	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrGrx5 glutaredoxin (104 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	106
TIGR02189	99	TIGR02189, GlrX-like_plant, Glutaredoxin-like fami	3e-44
cd03419	82	cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) fam	2e-35
TIGR02180	84	TIGR02180, GRX_euk, Glutaredoxin	3e-18
cd02066	72	cd02066, GRX_family, Glutaredoxin (GRX) family; co	2e-14
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	4e-10
TIGR02181	79	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	8e-06
cd03031	147	cd03031, GRX_GRX_like, Glutaredoxin (GRX) family,	8e-05
COG0695	80	COG0695, GrxC, Glutaredoxin and related proteins [	1e-04
PHA03050	108	PHA03050, PHA03050, glutaredoxin; Provisional	3e-04
PRK10638	83	PRK10638, PRK10638, glutaredoxin 3; Provisional	4e-04
TIGR02190	79	TIGR02190, GlrX-dom, Glutaredoxin-family domain	5e-04
COG0278	105	COG0278, COG0278, Glutaredoxin-related protein [Po	0.002

>gnl|CDD|233771 TIGR02189, GlrX-like_plant, Glutaredoxin-like family

 Score =  138 bits (350), Expect = 3e-44
 Identities = 54/99 (54%), Positives = 71/99 (71%)

Query: 4   VTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQP 63
           V RMV+EK VVIFS+S CC+C  ++ L+   G NP V+E+D+ P G  IE AL +LGC P
Sbjct: 1   VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSP 60

Query: 64  TVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIWL 102
            VPAVF+G +LVGG   VM+LH+   L P+L +AGA+WL
Sbjct: 61  AVPAVFVGGKLVGGLENVMALHISGSLVPMLKQAGALWL 99

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. Length = 99

>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score =  115 bits (291), Expect = 2e-35
 Identities = 37/82 (45%), Positives = 51/82 (62%)

Query: 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG 71
          PVV+FSKS C  C   ++L+   G  P V ELDQ  +G +I+  LQ+L  Q TVP VFIG
Sbjct: 1  PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIG 60

Query: 72 QRLVGGPNQVMSLHVQNELGPL 93
           + +GG + +M+LH   +L  L
Sbjct: 61 GKFIGGCDDLMALHKSGKLVKL 82

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, which are members of this subfamily. Also included in this subfamily are the N-terminal GRX domains of proteins similar to human thioredoxin reductase 1 and 3. Length = 82

>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin

 Score = 72.3 bits (178), Expect = 3e-18
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 2/84 (2%)

Query: 13 VVIFSKSECCICFSIQTLICGFGANPT--VYELDQIPNGPQIERALQQLGCQPTVPAVFI 70
          VV+FSKS C  C   + ++      P   V ELDQ+ NG +I+  L+++  Q TVP +FI
Sbjct: 1  VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60

Query: 71 GQRLVGGPNQVMSLHVQNELGPLL 94
            + +GG + +++L+   +L  LL
Sbjct: 61 NGKFIGGCSDLLALYKSGKLAELL 84

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. Length = 84

>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 62.5 bits (153), Expect = 2e-14
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG 71
           VV+FSKS C  C   + L+   G      E+D + +G ++   L++L   PTVP +FI 
Sbjct: 1  KVVVFSKSTCPYCKRAKRLLESLG--IEFEEIDILEDG-ELREELKELSGWPTVPQIFIN 57

Query: 72 QRLVGGPNQVMSLH 85
             +GG + + +LH
Sbjct: 58 GEFIGGYDDLKALH 71

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 50.6 bits (122), Expect = 4e-10
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72
          VV+F+K  C  C   + L+   G      ++D+ P   +I   L++L   PTVP VFI  
Sbjct: 1  VVLFTKPTCPFCKRAKRLLDSLGVKFEEIDVDEDP---EIREELKELSGWPTVPQVFIDG 57

Query: 73 RLV 75
            +
Sbjct: 58 EHI 60

Length = 60

>gnl|CDD|233766 TIGR02181, GRX_bact, Glutaredoxin, GrxC family

 Score = 40.3 bits (95), Expect = 8e-06
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72
          V I++K  C  C   + L+   G   T   +D     P +   + Q   + TVP +FIG 
Sbjct: 1  VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVD---GDPALRDEMMQRSGRRTVPQIFIGD 57

Query: 73 RLVGGPNQVMSLHVQNELGPLL 94
            VGG + + +L  + +L PLL
Sbjct: 58 VHVGGCDDLYALDREGKLDPLL 79

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides [Energy metabolism, Electron transport]. Length = 79

>gnl|CDD|239329 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

 Score = 38.8 bits (91), Expect = 8e-05
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 54 RALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGA 99
            L       ++P VF+  R +GG  +V+ L+   EL  LL    A
Sbjct: 50 ELLGAELKAVSLPRVFVDGRYLGGAEEVLRLNESGELRKLLKGIRA 95

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. Length = 147

>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70
            V I++K  C  C   + L+   G +    ++D      +    +++   Q TVP +FI
Sbjct: 1  ANVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDE-PEEAREMVKRGKGQRTVPQIFI 59

Query: 71 GQRLVGGPNQVMSLHVQNEL 90
          G + VGG + + +L  + +L
Sbjct: 60 GGKHVGGCDDLDALEAKGKL 79

Length = 80

>gnl|CDD|165343 PHA03050, PHA03050, glutaredoxin; Provisional

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 6   RMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN-GPQ--IERALQQLGCQ 62
           R+ N K V IF K  C  C +   ++  F      YE+  I    P+  +    +Q+   
Sbjct: 9   RLANNK-VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG 67

Query: 63  PTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
            TVP +F G+  +GG + ++ +   + LG +L   G +
Sbjct: 68  RTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGVL 105

Length = 108

>gnl|CDD|182607 PRK10638, PRK10638, glutaredoxin 3; Provisional

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%)

Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72
          V I++K+ C  C   + L+   G   +  E+    +  + E  +++ G + TVP +FI  
Sbjct: 4  VEIYTKATCPFCHRAKALLNSKGV--SFQEIPIDGDAAKREEMIKRSG-RTTVPQIFIDA 60

Query: 73 RLVGGPNQVMSLHVQNELGPLL 94
          + +GG + + +L  +  L PLL
Sbjct: 61 QHIGGCDDLYALDARGGLDPLL 82

Length = 83

>gnl|CDD|131245 TIGR02190, GlrX-dom, Glutaredoxin-family domain

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIE-RALQQLGCQPTVPAVF 69
          + VV+F+K  C  C   +  +   G     Y+ ++IP G     R+L+ +    TVP VF
Sbjct: 8  ESVVVFTKPGCPFCAKAKATLKEKG-----YDFEEIPLGNDARGRSLRAVTGATTVPQVF 62

Query: 70 IGQRLVGGPNQV 81
          IG +L+GG +++
Sbjct: 63 IGGKLIGGSDEL 74

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. Length = 79

>gnl|CDD|223355 COG0278, COG0278, Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 15/107 (14%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGA---------NPTVYELDQIPNGPQ 51
           +D + + + E PVV+F K       + +   CGF A             +    +   P+
Sbjct: 5   LDRIQKQIKENPVVLFMKG------TPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPE 58

Query: 52  IERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAG 98
           I + L++    PT P +++    VGG + V  ++   EL  LL  AG
Sbjct: 59  IRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQSGELQTLLKEAG 105

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	100.0
PHA03050	108	glutaredoxin; Provisional	100.0
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	100.0
PRK10824	115	glutaredoxin-4; Provisional	100.0
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	99.97
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	99.95
PRK10638	83	glutaredoxin 3; Provisional	99.94
PTZ00062	204	glutaredoxin; Provisional	99.94
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	99.93
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	99.93
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	99.92
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	99.92
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	99.92
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	99.91
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	99.91
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	99.89
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	99.89
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	99.88
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	99.88
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	99.87
PRK11200	85	grxA glutaredoxin 1; Provisional	99.86
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	99.84
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	99.82
cd03030	92	GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3	99.81
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	99.8
PRK10329	81	glutaredoxin-like protein; Provisional	99.75
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	99.75
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.61
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	99.58
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	99.58
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	99.54
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.46
PF04908	99	SH3BGR: SH3-binding, glutamic acid-rich protein; I	99.4
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	99.27
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	99.25
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	99.2
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	99.17
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.15
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	99.1
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	99.09
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.04
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	99.01
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.99
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	98.98
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	98.96
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.96
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	98.95
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	98.94
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	98.94
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	98.9
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	98.88
PHA02125	75	thioredoxin-like protein	98.88
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	98.83
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	98.81
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	98.8
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	98.78
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	98.77
PRK12559	131	transcriptional regulator Spx; Provisional	98.77
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.72
cd03058	74	GST_N_Tau GST_N family, Class Tau subfamily; GSTs	98.69
cd03053	76	GST_N_Phi GST_N family, Class Phi subfamily; compo	98.67
cd03054	72	GST_N_Metaxin GST_N family, Metaxin subfamily; com	98.66
cd03061	91	GST_N_CLIC GST_N family, Chloride Intracellular Ch	98.65
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	98.64
PHA02278	103	thioredoxin-like protein	98.61
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	98.61
cd03049	73	GST_N_3 GST_N family, unknown subfamily 3; compose	98.59
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	98.58
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.58
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.58
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	98.55
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.51
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.5
cd03076	73	GST_N_Pi GST_N family, Class Pi subfamily; GSTs ar	98.5
cd03042	73	GST_N_Zeta GST_N family, Class Zeta subfamily; GST	98.47
KOG4023	108	consensus Uncharacterized conserved protein [Funct	98.46
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.43
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.42
PF13409	70	GST_N_2: Glutathione S-transferase, N-terminal dom	98.42
cd03080	75	GST_N_Metaxin_like GST_N family, Metaxin subfamily	98.4
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.39
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	98.38
cd03039	72	GST_N_Sigma_like GST_N family, Class Sigma_like; c	98.37
cd03048	81	GST_N_Ure2p_like GST_N family, Ure2p-like subfamil	98.37
cd03038	84	GST_N_etherase_LigE GST_N family, Beta etherase Li	98.37
COG3118	304	Thioredoxin domain-containing protein [Posttransla	98.35
TIGR02182	209	GRXB Glutaredoxin, GrxB family. This model include	98.35
cd03044	75	GST_N_EF1Bgamma GST_N family, Gamma subunit of Elo	98.34
KOG3029	370	consensus Glutathione S-transferase-related protei	98.34
PRK09381	109	trxA thioredoxin; Provisional	98.33
PRK10387	210	glutaredoxin 2; Provisional	98.32
PRK09481	211	sspA stringent starvation protein A; Provisional	98.31
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.31
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.3
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	98.29
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	98.28
PTZ00051	98	thioredoxin; Provisional	98.28
COG1393	117	ArsC Arsenate reductase and related proteins, glut	98.27
PRK10026	141	arsenate reductase; Provisional	98.27
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	98.27
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.25
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	98.24
TIGR00014	114	arsC arsenate reductase (glutaredoxin). composed o	98.24
PRK10853	118	putative reductase; Provisional	98.23
cd03050	76	GST_N_Theta GST_N family, Class Theta subfamily; c	98.23
TIGR01616	126	nitro_assoc nitrogenase-associated protein. This m	98.23
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	98.22
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	98.19
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.18
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	98.16
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.16
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.16
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	98.16
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	98.13
cd03047	73	GST_N_2 GST_N family, unknown subfamily 2; compose	98.12
KOG0406	231	consensus Glutathione S-transferase [Posttranslati	98.12
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	98.12
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	98.11
PRK10996	139	thioredoxin 2; Provisional	98.1
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	98.1
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.08
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	98.07
TIGR00862	236	O-ClC intracellular chloride channel protein. Thes	98.05
cd03057	77	GST_N_Beta GST_N family, Class Beta subfamily; GST	98.04
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.02
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.02
cd03043	73	GST_N_1 GST_N family, unknown subfamily 1; compose	97.98
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	97.97
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	97.97
cd03046	76	GST_N_GTT1_like GST_N family, Saccharomyces cerevi	97.95
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	97.95
PRK15113	214	glutathione S-transferase; Provisional	97.94
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	97.93
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	97.92
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	97.92
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	97.9
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	97.89
PLN02473	214	glutathione S-transferase	97.89
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	97.87
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	97.86
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	97.86
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	97.83
PF13728	215	TraF: F plasmid transfer operon protein	97.82
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	97.8
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	97.77
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	97.76
PLN02378	213	glutathione S-transferase DHAR1	97.76
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	97.76
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	97.76
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	97.76
TIGR01262	210	maiA maleylacetoacetate isomerase. Maleylacetoacet	97.75
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	97.74
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.73
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	97.72
PRK13728	181	conjugal transfer protein TrbB; Provisional	97.72
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	97.7
PF03960	110	ArsC: ArsC family; InterPro: IPR006660 Several bac	97.66
PLN02817	265	glutathione dehydrogenase (ascorbate)	97.65
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	97.61
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	97.57
PF07315	93	DUF1462: Protein of unknown function (DUF1462); In	97.51
COG2999	215	GrxB Glutaredoxin 2 [Posttranslational modificatio	97.51
COG0625	211	Gst Glutathione S-transferase [Posttranslational m	97.49
PTZ00062	204	glutaredoxin; Provisional	97.49
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	97.47
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	97.47
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	97.46
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	97.45
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	97.44
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.44
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	97.43
PRK10357	202	putative glutathione S-transferase; Provisional	97.41
cd03077	79	GST_N_Alpha GST_N family, Class Alpha subfamily; G	97.38
PF06764	202	DUF1223: Protein of unknown function (DUF1223); In	97.26
PLN02395	215	glutathione S-transferase	97.26
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	97.24
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	97.22
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	97.21
COG4837	106	Uncharacterized protein conserved in bacteria [Fun	97.2
KOG1422	221	consensus Intracellular Cl- channel CLIC, contains	97.2
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	97.2
cd03078	73	GST_N_Metaxin1_like GST_N family, Metaxin subfamil	97.18
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	97.13
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	97.11
PRK13972	215	GSH-dependent disulfide bond oxidoreductase; Provi	97.08
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	97.05
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	97.05
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	97.05
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	97.04
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	96.96
KOG0868	217	consensus Glutathione S-transferase [Posttranslati	96.95
PTZ00102	477	disulphide isomerase; Provisional	96.93
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	96.93
cd03079	74	GST_N_Metaxin2 GST_N family, Metaxin subfamily, Me	96.92
PRK11752	264	putative S-transferase; Provisional	96.89
PF02798	76	GST_N: Glutathione S-transferase, N-terminal domai	96.83
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	96.83
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	96.8
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	96.78
PLN02309	457	5'-adenylylsulfate reductase	96.71
cd03075	82	GST_N_Mu GST_N family, Class Mu subfamily; GSTs ar	96.69
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	96.68
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	96.6
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	96.52
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	96.49
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	96.44
PRK10542	201	glutathionine S-transferase; Provisional	96.41
PTZ00102	477	disulphide isomerase; Provisional	96.41
PF06953	123	ArsD: Arsenical resistance operon trans-acting rep	96.35
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	96.29
PTZ00057	205	glutathione s-transferase; Provisional	96.28
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	96.27
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	96.15
COG2143	182	Thioredoxin-related protein [Posttranslational mod	96.11
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	96.01
COG3019	149	Predicted metal-binding protein [General function	96.0
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	95.91
PTZ00056	199	glutathione peroxidase; Provisional	95.89
KOG0867	226	consensus Glutathione S-transferase [Posttranslati	95.85
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	95.76
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	95.75
COG5494	265	Predicted thioredoxin/glutaredoxin [Posttranslatio	95.66
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	95.55
KOG4244	281	consensus Failed axon connections (fax) protein/gl	95.45
PHA03075	123	glutaredoxin-like protein; Provisional	95.41
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	95.34
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	95.32
PF10568	72	Tom37: Outer mitochondrial membrane transport comp	95.12
KOG3425	128	consensus Uncharacterized conserved protein [Funct	95.11
smart00594	122	UAS UAS domain.	95.08
PLN02412	167	probable glutathione peroxidase	95.06
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	95.02
PTZ00256	183	glutathione peroxidase; Provisional	94.99
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	94.93
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	94.89
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	94.84
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	94.61
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	94.6
KOG4277	468	consensus Uncharacterized conserved protein, conta	94.44
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	94.39
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	94.28
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	94.23
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	94.08
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	93.94
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	93.79
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	93.57
KOG1695	206	consensus Glutathione S-transferase [Posttranslati	93.55
TIGR03759	200	conj_TIGR03759 integrating conjugative element pro	93.33
PF04134	114	DUF393: Protein of unknown function, DUF393; Inter	93.25
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	93.21
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	92.99
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	92.94
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	92.91
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	92.87
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	92.82
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	92.7
KOG4420	325	consensus Uncharacterized conserved protein (Gangl	92.06
COG5429	261	Uncharacterized secreted protein [Function unknown	92.05
PRK13599	215	putative peroxiredoxin; Provisional	92.04
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	91.69
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	91.3
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	91.29
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	91.25
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	91.24
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	91.16
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	90.8
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	90.71
PRK13190	202	putative peroxiredoxin; Provisional	90.51
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	89.57
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	89.56
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	89.3
KOG3171	273	consensus Conserved phosducin-like protein [Signal	89.11
PRK13189	222	peroxiredoxin; Provisional	88.85
PRK13191	215	putative peroxiredoxin; Provisional	88.74
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	86.95
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	86.5
PRK10606	183	btuE putative glutathione peroxidase; Provisional	86.25
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	86.07
COG3340	224	PepE Peptidase E [Amino acid transport and metabol	85.97
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	85.97
PF11287	112	DUF3088: Protein of unknown function (DUF3088); In	85.37
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	85.01
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	84.84
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	84.73
KOG1672	211	consensus ATP binding protein [Posttranslational m	84.72
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	84.29
PRK15000	200	peroxidase; Provisional	84.22
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	83.74
PF10865	120	DUF2703: Domain of unknown function (DUF2703); Int	83.57
COG0041	162	PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m	83.48
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	83.46
PTZ00137	261	2-Cys peroxiredoxin; Provisional	83.22
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	82.63
PF01323	193	DSBA: DSBA-like thioredoxin domain; InterPro: IPR0	81.41
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	80.97

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=100.00  E-value=3.7e-35  Score=179.65  Aligned_cols=98  Identities=54%  Similarity=1.042  Sum_probs=93.2

Q ss_pred             HHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938            4 VTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus         4 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      +++++++++|+||++++||||.+++++|++++++|+++|||.+++..++++++.+.++++|+|+|||||++|||+|++.+
T Consensus         1 ~~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~   80 (99)
T TIGR02189         1 VRRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA   80 (99)
T ss_pred             ChhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence            46789999999999999999999999999999999999999999888888888888888999999999999999999999


Q ss_pred             HHHhCCchHHHHhcCcee
Q 042938           84 LHVQNELGPLLVRAGAIW  101 (106)
Q Consensus        84 ~~~~g~L~~~L~~~g~~~  101 (106)
                      ++++|+|.++|+++|+++
T Consensus        81 l~~~G~L~~~l~~~~~~~   98 (99)
T TIGR02189        81 LHISGSLVPMLKQAGALW   98 (99)
T ss_pred             HHHcCCHHHHHHHhCccc
Confidence            999999999999999985

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PHA03050 glutaredoxin; Provisional

Probab=100.00  E-value=1.9e-33  Score=174.39  Aligned_cols=100  Identities=20%  Similarity=0.444  Sum_probs=93.7

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCC---CceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecc
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGA---NPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGP   78 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v---~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~   78 (106)
                      +++++++++++|+||++++||||.+++++|+++++   +|+++||+...+..++++.+.+.++.+|||+|||||++|||+
T Consensus         4 ~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~   83 (108)
T PHA03050          4 EFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGY   83 (108)
T ss_pred             HHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeCh
Confidence            46889999999999999999999999999999999   799999998766677888999998889999999999999999


Q ss_pred             hHHHhHHHhCCchHHHHhcCcee
Q 042938           79 NQVMSLHVQNELGPLLVRAGAIW  101 (106)
Q Consensus        79 ~~~~~~~~~g~L~~~L~~~g~~~  101 (106)
                      |++.+++++|+|.++|+.+|+++
T Consensus        84 ddl~~l~~~g~L~~~l~~~~~~~  106 (108)
T PHA03050         84 SDLLEIDNMDALGDILSSIGVLR  106 (108)
T ss_pred             HHHHHHHHcCCHHHHHHHccccc
Confidence            99999999999999999999975

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-33  Score=173.20  Aligned_cols=101  Identities=48%  Similarity=0.850  Sum_probs=97.5

Q ss_pred             ChHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938            1 MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQ   80 (106)
Q Consensus         1 ~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~   80 (106)
                      ++++++++++++|+||++++||||++++.+|...++.+..+++|.+++..++++++.+.++++|+|.|||+|++|||.++
T Consensus         4 ~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~d   83 (104)
T KOG1752|consen    4 EAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASD   83 (104)
T ss_pred             HHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHhCCchHHHHhcCcee
Q 042938           81 VMSLHVQNELGPLLVRAGAIW  101 (106)
Q Consensus        81 ~~~~~~~g~L~~~L~~~g~~~  101 (106)
                      ++++|.+|+|.++|+++|++|
T Consensus        84 l~~lh~~G~L~~~l~~~~~~~  104 (104)
T KOG1752|consen   84 LMALHKSGELVPLLKEAGALW  104 (104)
T ss_pred             HHHHHHcCCHHHHHHHhhccC
Confidence            999999999999999999875

>PRK10824 glutaredoxin-4; Provisional

Probab=100.00  E-value=1.4e-32  Score=171.67  Aligned_cols=97  Identities=23%  Similarity=0.448  Sum_probs=90.2

Q ss_pred             hHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938            2 DMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      +++++++++++|+||++     |+||||.+++++|++++++|.++|++.++   ++++++.+.++++|||+|||||++||
T Consensus         6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~---~~~~~l~~~sg~~TVPQIFI~G~~IG   82 (115)
T PRK10824          6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNP---DIRAELPKYANWPTFPQLWVDGELVG   82 (115)
T ss_pred             HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCH---HHHHHHHHHhCCCCCCeEEECCEEEc
Confidence            57899999999999999     49999999999999999999999998764   47778999999999999999999999


Q ss_pred             cchHHHhHHHhCCchHHHHhcCcee
Q 042938           77 GPNQVMSLHVQNELGPLLVRAGAIW  101 (106)
Q Consensus        77 g~~~~~~~~~~g~L~~~L~~~g~~~  101 (106)
                      |+|++.+++.+|+|.++|+++|+++
T Consensus        83 G~ddl~~l~~~G~L~~lL~~~~~~~  107 (115)
T PRK10824         83 GCDIVIEMYQRGELQQLIKETAAKY  107 (115)
T ss_pred             ChHHHHHHHHCCCHHHHHHHHHhhh
Confidence            9999999999999999999999854

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=99.97  E-value=6.5e-30  Score=155.91  Aligned_cols=91  Identities=22%  Similarity=0.478  Sum_probs=83.0

Q ss_pred             ChHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEe
Q 042938            1 MDMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV   75 (106)
Q Consensus         1 ~~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i   75 (106)
                      ++++++++++++|+||++     |+||||.+++++|+++|++|+++||+.++   ++++++.+.++.+|+|+|||||++|
T Consensus         2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~---~~~~~l~~~tg~~tvP~vfi~g~~i   78 (97)
T TIGR00365         2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDP---EIRQGIKEYSNWPTIPQLYVKGEFV   78 (97)
T ss_pred             hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCH---HHHHHHHHHhCCCCCCEEEECCEEE
Confidence            367899999999999998     89999999999999999999999997653   4566888888889999999999999


Q ss_pred             ecchHHHhHHHhCCchHHH
Q 042938           76 GGPNQVMSLHVQNELGPLL   94 (106)
Q Consensus        76 Gg~~~~~~~~~~g~L~~~L   94 (106)
                      ||+|++.+++++|+|.++|
T Consensus        79 GG~ddl~~l~~~g~L~~~l   97 (97)
T TIGR00365        79 GGCDIIMEMYQSGELQTLL   97 (97)
T ss_pred             eChHHHHHHHHCcChHHhC
Confidence            9999999999999999875

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=99.95  E-value=1.1e-27  Score=144.16  Aligned_cols=85  Identities=24%  Similarity=0.540  Sum_probs=77.5

Q ss_pred             HHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecc
Q 042938            4 VTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGP   78 (106)
Q Consensus         4 ~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~   78 (106)
                      +++++++++|+||++     ++||||.+++++|++.+++|+++|++.+   .++++++.+.++..|+|+||+||++|||+
T Consensus         1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~---~~~~~~l~~~~g~~tvP~vfi~g~~iGG~   77 (90)
T cd03028           1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED---EEVRQGLKEYSNWPTFPQLYVNGELVGGC   77 (90)
T ss_pred             ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence            467899999999998     6999999999999999999999999865   34667888888889999999999999999


Q ss_pred             hHHHhHHHhCCch
Q 042938           79 NQVMSLHVQNELG   91 (106)
Q Consensus        79 ~~~~~~~~~g~L~   91 (106)
                      +++.+++++|+|+
T Consensus        78 ~~l~~l~~~g~L~   90 (90)
T cd03028          78 DIVKEMHESGELQ   90 (90)
T ss_pred             HHHHHHHHcCCcC
Confidence            9999999999985

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PRK10638 glutaredoxin 3; Provisional

Probab=99.94  E-value=3e-26  Score=135.88  Aligned_cols=82  Identities=24%  Similarity=0.451  Sum_probs=73.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCc
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNEL   90 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L   90 (106)
                      .+|++|++++||+|++++.+|++.+++|+++||+.+++   .++.+.+.++..++|+||+||++|||++++.+++.+|+|
T Consensus         2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~---~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l   78 (83)
T PRK10638          2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAA---KREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGL   78 (83)
T ss_pred             CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCH
Confidence            47999999999999999999999999999999987654   334566667789999999999999999999999999999


Q ss_pred             hHHHH
Q 042938           91 GPLLV   95 (106)
Q Consensus        91 ~~~L~   95 (106)
                      .++|+
T Consensus        79 ~~~~~   83 (83)
T PRK10638         79 DPLLK   83 (83)
T ss_pred             HHHhC
Confidence            99874

>PTZ00062 glutaredoxin; Provisional

Probab=99.94  E-value=3.3e-26  Score=155.54  Aligned_cols=92  Identities=18%  Similarity=0.431  Sum_probs=84.5

Q ss_pred             hHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938            2 DMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      ++++++++.++|++|++     |+||||++++.+|++.+++|.++||+.++   ++++++.++++++|+|+|||||++||
T Consensus       104 ~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~---~~~~~l~~~sg~~TvPqVfI~G~~IG  180 (204)
T PTZ00062        104 EKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDP---DLREELKVYSNWPTYPQLYVNGELIG  180 (204)
T ss_pred             HHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCH---HHHHHHHHHhCCCCCCeEEECCEEEc
Confidence            56889999999999999     68999999999999999999999999664   45668888888899999999999999


Q ss_pred             cchHHHhHHHhCCchHHHHh
Q 042938           77 GPNQVMSLHVQNELGPLLVR   96 (106)
Q Consensus        77 g~~~~~~~~~~g~L~~~L~~   96 (106)
                      |+|++++++++|+|.++|.+
T Consensus       181 G~d~l~~l~~~G~L~~~l~~  200 (204)
T PTZ00062        181 GHDIIKELYESNSLRKVIPD  200 (204)
T ss_pred             ChHHHHHHHHcCChhhhhhh
Confidence            99999999999999999865

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=99.93  E-value=9.8e-26  Score=132.20  Aligned_cols=79  Identities=32%  Similarity=0.547  Sum_probs=70.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCchH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGP   92 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L~~   92 (106)
                      |++|++++||+|.+++++|+++|++|+++|++.++.   .++.+...++..++|+||+||++|||++++.+++++|+|.+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~---~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~   77 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPA---LRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDP   77 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHH---HHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhh
Confidence            689999999999999999999999999999997653   33355566667999999999999999999999999999998


Q ss_pred             HH
Q 042938           93 LL   94 (106)
Q Consensus        93 ~L   94 (106)
                      +|
T Consensus        78 ~l   79 (79)
T TIGR02181        78 LL   79 (79)
T ss_pred             hC
Confidence            65

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>TIGR02180 GRX_euk Glutaredoxin

Probab=99.93  E-value=3.7e-25  Score=130.40  Aligned_cols=82  Identities=35%  Similarity=0.629  Sum_probs=76.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCC--ceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCc
Q 042938           13 VVIFSKSECCICFSIQTLICGFGAN--PTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNEL   90 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~--~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L   90 (106)
                      |++|++++||+|.+++++|++.+++  |+.++|+.+++..++++++.+.++..++|+||+||+++||++++.+++++|+|
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l   80 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL   80 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence            6899999999999999999999999  99999999877777778888888889999999999999999999999999999


Q ss_pred             hHHH
Q 042938           91 GPLL   94 (106)
Q Consensus        91 ~~~L   94 (106)
                      .++|
T Consensus        81 ~~~~   84 (84)
T TIGR02180        81 AELL   84 (84)
T ss_pred             hhhC
Confidence            9875

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.1e-24  Score=128.53  Aligned_cols=78  Identities=26%  Similarity=0.432  Sum_probs=69.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCc
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNEL   90 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L   90 (106)
                      .|+||++++||||.+++++|++.|++|++++++.++. .+.++++...++.+|||+||+||+++||++++.+++..|.|
T Consensus         2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l   79 (80)
T COG0695           2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL   79 (80)
T ss_pred             CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence            6899999999999999999999999999999999874 34445776766789999999999999999999999888876

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.92  E-value=1.9e-24  Score=127.04  Aligned_cols=81  Identities=44%  Similarity=0.739  Sum_probs=75.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCch
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELG   91 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L~   91 (106)
                      +|++|++++||+|.+++++|++.+++|+.++++.+++..++++.+.+.++..++|++|++|+++||++++.++.++|+|+
T Consensus         1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~   80 (82)
T cd03419           1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV   80 (82)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence            58999999999999999999999999999999998876667778888888899999999999999999999999999997


Q ss_pred             H
Q 042938           92 P   92 (106)
Q Consensus        92 ~   92 (106)
                      +
T Consensus        81 ~   81 (82)
T cd03419          81 K   81 (82)
T ss_pred             C
Confidence            6

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.1e-24  Score=131.10  Aligned_cols=95  Identities=27%  Similarity=0.515  Sum_probs=87.3

Q ss_pred             ChHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcC-CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeE
Q 042938            1 MDMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFG-ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRL   74 (106)
Q Consensus         1 ~~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~-v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~   74 (106)
                      ++++++.++.++|++|.+     |.|.|+.++..+|...| ++|..+||-.+++   +++.++.++.++|+||++|+|++
T Consensus         5 ~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~e---iR~~lk~~s~WPT~PQLyi~GEf   81 (105)
T COG0278           5 LDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPE---IRQGLKEYSNWPTFPQLYVNGEF   81 (105)
T ss_pred             HHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHH---HHhccHhhcCCCCCceeeECCEE
Confidence            367889999999999988     67999999999999999 7999999988755   66688999999999999999999


Q ss_pred             eecchHHHhHHHhCCchHHHHhcC
Q 042938           75 VGGPNQVMSLHVQNELGPLLVRAG   98 (106)
Q Consensus        75 iGg~~~~~~~~~~g~L~~~L~~~g   98 (106)
                      |||+|-+.+|+++|+|+++|++++
T Consensus        82 vGG~DIv~Em~q~GELq~~l~~~~  105 (105)
T COG0278          82 VGGCDIVREMYQSGELQTLLKEAG  105 (105)
T ss_pred             eccHHHHHHHHHcchHHHHHHhcC
Confidence            999999999999999999998875

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=99.91  E-value=2.9e-24  Score=139.42  Aligned_cols=84  Identities=23%  Similarity=0.358  Sum_probs=73.3

Q ss_pred             CEEEEEcC------CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC----CCCccEEEECCeEeecchHH
Q 042938           12 PVVIFSKS------ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC----QPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus        12 ~v~vf~~~------~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~----~~tvP~ifv~g~~iGg~~~~   81 (106)
                      +|+||+++      +||+|.+++.+|++++++|+++||+.+++..   +.|.+..+    ..++|+|||+|++|||+|++
T Consensus         1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~---~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del   77 (147)
T cd03031           1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFR---EELRELLGAELKAVSLPRVFVDGRYLGGAEEV   77 (147)
T ss_pred             CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHH---HHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence            58999999      9999999999999999999999999875433   34444433    58999999999999999999


Q ss_pred             HhHHHhCCchHHHHhcC
Q 042938           82 MSLHVQNELGPLLVRAG   98 (106)
Q Consensus        82 ~~~~~~g~L~~~L~~~g   98 (106)
                      .+++++|+|.++|+++.
T Consensus        78 ~~L~e~G~L~~lL~~~~   94 (147)
T cd03031          78 LRLNESGELRKLLKGIR   94 (147)
T ss_pred             HHHHHcCCHHHHHhhcc
Confidence            99999999999999863

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.91  E-value=1.7e-23  Score=121.24  Aligned_cols=74  Identities=24%  Similarity=0.470  Sum_probs=63.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCC-CccEEEECCeEeecchHHHhHHHhC
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQP-TVPAVFIGQRLVGGPNQVMSLHVQN   88 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~-tvP~ifv~g~~iGg~~~~~~~~~~g   88 (106)
                      +|++|++++||+|.+++.+|++++++|+++||+.+++   .++.+.+.++.. ++|+||+||+++||++++.+++++|
T Consensus         1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~---~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g   75 (75)
T cd03418           1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPA---LREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG   75 (75)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHH---HHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence            5899999999999999999999999999999997633   223444444445 9999999999999999999999887

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=99.89  E-value=3.7e-23  Score=119.73  Aligned_cols=72  Identities=25%  Similarity=0.455  Sum_probs=63.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .+|++|+.++||+|.+++.+|++.|++|+.+|++.++...   +.+.+.++..++|+||+||++|||++++.+++
T Consensus         1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~---~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~   72 (73)
T cd03027           1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERK---AELEERTGSSVVPQIFFNEKLVGGLTDLKSLE   72 (73)
T ss_pred             CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHH---HHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence            3689999999999999999999999999999999876533   45666666789999999999999999999875

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=99.89  E-value=7.9e-23  Score=120.18  Aligned_cols=74  Identities=27%  Similarity=0.489  Sum_probs=64.0

Q ss_pred             hhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938            7 MVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus         7 ~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +-++++|++|++++||+|.+++++|++.|++|+++|++.+++..    .+...++..++|+||+||++|||++++.+.
T Consensus         4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~----~~~~~~g~~~vP~i~i~g~~igG~~~l~~~   77 (79)
T TIGR02190         4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGR----SLRAVTGATTVPQVFIGGKLIGGSDELEAY   77 (79)
T ss_pred             cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHH----HHHHHHCCCCcCeEEECCEEEcCHHHHHHH
Confidence            45678999999999999999999999999999999998765543    334456679999999999999999999875

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=99.88  E-value=1.7e-22  Score=116.56  Aligned_cols=70  Identities=27%  Similarity=0.461  Sum_probs=61.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +|++|++++||+|.+++++|++.+++|+++|++.++..    +.+...++..++|+||+||+++||++++.++.
T Consensus         2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~----~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l   71 (72)
T cd03029           2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITG----RSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF   71 (72)
T ss_pred             eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhH----HHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence            68999999999999999999999999999999987632    24455577799999999999999999998763

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=99.88  E-value=3.6e-22  Score=147.84  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=76.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHH-----HhCCCCCccEEEECCeEeecchHHHhH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQ-----QLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~-----~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +.+|+||++++||+|.+++++|++.|++|+++||+.++...++.+...     ..++.+|||+|||||++|||++++.. 
T Consensus         1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~-   79 (410)
T PRK12759          1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA-   79 (410)
T ss_pred             CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH-
Confidence            357999999999999999999999999999999997776555333322     22467899999999999999999987 


Q ss_pred             HHhCCchHHHHhcCcee
Q 042938           85 HVQNELGPLLVRAGAIW  101 (106)
Q Consensus        85 ~~~g~L~~~L~~~g~~~  101 (106)
                       .+|+|.++|++.|...
T Consensus        80 -~~g~l~~~~~~~~~~~   95 (410)
T PRK12759         80 -RAGEVIARVKGSSLTT   95 (410)
T ss_pred             -HhCCHHHHhcCCcccc
Confidence             8999999999988743

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=99.87  E-value=9.9e-22  Score=117.27  Aligned_cols=73  Identities=23%  Similarity=0.375  Sum_probs=58.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCC--CCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQ--PTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~--~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      |+||++++||+|.+++++|++++     ++|+.+|++.+....   +.+...++.  .+||+||+||+++||++++.++.
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~---~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~   78 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISK---ADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLV   78 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHH---HHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHH
Confidence            79999999999999999999985     567888887543212   234444554  79999999999999999999987


Q ss_pred             HhC
Q 042938           86 VQN   88 (106)
Q Consensus        86 ~~g   88 (106)
                      +++
T Consensus        79 ~~~   81 (86)
T TIGR02183        79 KEN   81 (86)
T ss_pred             Hhc
Confidence            764

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=99.86  E-value=2e-21  Score=115.50  Aligned_cols=73  Identities=21%  Similarity=0.307  Sum_probs=60.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHhh-----cCCCceEEEcccCCCchHHHHHHHHhCCC--CCccEEEECCeEeecchHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICG-----FGANPTVYELDQIPNGPQIERALQQLGCQ--PTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~-----~~v~~~~v~vd~~~~~~~~~~~l~~~~~~--~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +|++|++++||+|.+++++|++     .+++|+.+|++.++...+   .+....+.  .++|+||+||++|||++++.++
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~---el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~   78 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKA---DLEKTVGKPVETVPQIFVDQKHIGGCTDFEAY   78 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHH---HHHHHHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence            6899999999999999999999     789999999997543222   33444433  7999999999999999999998


Q ss_pred             HHh
Q 042938           85 HVQ   87 (106)
Q Consensus        85 ~~~   87 (106)
                      .++
T Consensus        79 ~~~   81 (85)
T PRK11200         79 VKE   81 (85)
T ss_pred             HHH
Confidence            754

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.84  E-value=2e-20  Score=106.28  Aligned_cols=71  Identities=31%  Similarity=0.565  Sum_probs=63.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +|++|++++||+|.+++.+|++++++|..+|++.+++   ..+.+.+.++..++|++|+||+++||++++.+++
T Consensus         1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~---~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~   71 (72)
T cd02066           1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE---LREELKELSGWPTVPQIFINGEFIGGYDDLKALH   71 (72)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence            6899999999999999999999999999999987765   3346666677799999999999999999998875

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=6.4e-20  Score=124.68  Aligned_cols=92  Identities=22%  Similarity=0.452  Sum_probs=85.0

Q ss_pred             HHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeec
Q 042938            3 MVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGG   77 (106)
Q Consensus         3 ~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg   77 (106)
                      .+.++++.++|++|.+     |.|.+++++..+|++.|++|..+||-.+++   +++.++.++.++|+||+||+|+++||
T Consensus       131 ~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~Dee---lRqglK~fSdWPTfPQlyI~GEFiGG  207 (227)
T KOG0911|consen  131 RLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEE---LRQGLKEFSDWPTFPQLYVKGEFIGG  207 (227)
T ss_pred             HHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHH---HHHHhhhhcCCCCccceeECCEeccC
Confidence            5678889999999988     669999999999999999999999998876   66689999999999999999999999


Q ss_pred             chHHHhHHHhCCchHHHHhc
Q 042938           78 PNQVMSLHVQNELGPLLVRA   97 (106)
Q Consensus        78 ~~~~~~~~~~g~L~~~L~~~   97 (106)
                      +|-+.+|+++|+|...|+++
T Consensus       208 lDIl~~m~~~geL~~~l~~~  227 (227)
T KOG0911|consen  208 LDILKEMHEKGELVYTLKEA  227 (227)
T ss_pred             cHHHHHHhhcccHHHHhhcC
Confidence            99999999999999999864

>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif

Probab=99.81  E-value=1.9e-19  Score=108.65  Aligned_cols=80  Identities=13%  Similarity=0.132  Sum_probs=66.7

Q ss_pred             EEEEEcCC------CchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhC----CCCCccEEEECCeEeecchHHH
Q 042938           13 VVIFSKSE------CCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG----CQPTVPAVFIGQRLVGGPNQVM   82 (106)
Q Consensus        13 v~vf~~~~------Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~----~~~tvP~ifv~g~~iGg~~~~~   82 (106)
                      |+||+++-      =..|.+++.+|+.++++|+++||+.+++..+   .+.+.+    +.+++|+||+||++|||+|++.
T Consensus         2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~---em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~   78 (92)
T cd03030           2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQ---WMRENVPNENGKPLPPQIFNGDEYCGDYEAFF   78 (92)
T ss_pred             EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHH---HHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence            56776644      3478899999999999999999998766544   444443    3589999999999999999999


Q ss_pred             hHHHhCCchHHHH
Q 042938           83 SLHVQNELGPLLV   95 (106)
Q Consensus        83 ~~~~~g~L~~~L~   95 (106)
                      +++++|+|.++|+
T Consensus        79 ~l~e~g~L~~lLk   91 (92)
T cd03030          79 EAKENNTLEEFLK   91 (92)
T ss_pred             HHHhCCCHHHHhC
Confidence            9999999999885

The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=99.80  E-value=1.9e-19  Score=100.44  Aligned_cols=60  Identities=25%  Similarity=0.453  Sum_probs=53.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i   75 (106)
                      |++|++++||+|.+++++|++.|++|+.+||+.+++   .++.+.+.++..++|+||+||++|
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~---~~~~l~~~~g~~~~P~v~i~g~~I   60 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEE---AREELKELSGVRTVPQVFIDGKFI   60 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHH---HHHHHHHHHSSSSSSEEEETTEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchh---HHHHHHHHcCCCccCEEEECCEEC
Confidence            789999999999999999999999999999999863   344666665679999999999986

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK10329 glutaredoxin-like protein; Provisional

Probab=99.75  E-value=5.4e-18  Score=100.17  Aligned_cols=64  Identities=17%  Similarity=0.420  Sum_probs=55.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecch
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPN   79 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~   79 (106)
                      +|++|++++||+|.+++.+|++.|++|+++||+.+++..+   .+.. .+..++|+|+++|..++||+
T Consensus         2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~---~~~~-~g~~~vPvv~i~~~~~~Gf~   65 (81)
T PRK10329          2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAE---TLRA-QGFRQLPVVIAGDLSWSGFR   65 (81)
T ss_pred             EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHH---HHHH-cCCCCcCEEEECCEEEecCC
Confidence            6899999999999999999999999999999998764333   4444 45689999999999999996

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=99.75  E-value=3.5e-18  Score=98.58  Aligned_cols=64  Identities=16%  Similarity=0.270  Sum_probs=54.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCe-EeecchH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQR-LVGGPNQ   80 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~-~iGg~~~   80 (106)
                      |++|++++||+|.+++++|++.|++|+++||+.++...   +.+... +..++|+|+++|. ++||++.
T Consensus         1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~---~~~~~~-g~~~vP~v~~~g~~~~~G~~~   65 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAI---DYVKAQ-GFRQVPVIVADGDLSWSGFRP   65 (72)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHH---HHHHHc-CCcccCEEEECCCcEEeccCH
Confidence            58999999999999999999999999999999876543   355544 5589999999775 9999963

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.61  E-value=3.7e-15  Score=84.82  Aligned_cols=65  Identities=17%  Similarity=0.317  Sum_probs=53.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecch
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPN   79 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~   79 (106)
                      +|++|+.++||+|++++.+|++.+++|..+|++.++...+  +.++. .+..++|+++++|+.++|++
T Consensus         1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~--~~~~~-~~~~~vP~~~~~~~~~~g~~   65 (74)
T TIGR02196         1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAARE--EVLKV-LGQRGVPVIVIGHKIIVGFD   65 (74)
T ss_pred             CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHH--HHHHH-hCCCcccEEEECCEEEeeCC
Confidence            4899999999999999999999999999999987654322  33333 45589999999999998875

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=99.58  E-value=1.3e-14  Score=82.47  Aligned_cols=66  Identities=23%  Similarity=0.425  Sum_probs=55.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQ   80 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~   80 (106)
                      ++++|+.++||+|.+++.+|++.+++|..++++.++..   .+.+...++..++|+++++|+.++|++.
T Consensus         1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~---~~~~~~~~~~~~vP~i~~~~~~i~g~~~   66 (73)
T cd02976           1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEA---LEELKKLNGYRSVPVVVIGDEHLSGFRP   66 (73)
T ss_pred             CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHH---HHHHHHHcCCcccCEEEECCEEEecCCH
Confidence            48999999999999999999999999999999875432   2345555566899999999999999874

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=4.2e-15  Score=103.80  Aligned_cols=89  Identities=20%  Similarity=0.365  Sum_probs=76.2

Q ss_pred             CCCEEEEEc------CCCchHHHHHHHHhhcCCCceEEEcccCCCch-HHHHHHHHhCCCCCccEEEECCeEeecchHHH
Q 042938           10 EKPVVIFSK------SECCICFSIQTLICGFGANPTVYELDQIPNGP-QIERALQQLGCQPTVPAVFIGQRLVGGPNQVM   82 (106)
Q Consensus        10 ~~~v~vf~~------~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~-~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~   82 (106)
                      ...|+||++      .+.-.|..++.+|+..+|.|.+.||..+.... ++++.+.......+.|+|||+|++|||.++++
T Consensus       130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~  209 (281)
T KOG2824|consen  130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV  209 (281)
T ss_pred             CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence            346999987      45889999999999999999999999987654 36666655334689999999999999999999


Q ss_pred             hHHHhCCchHHHHhcC
Q 042938           83 SLHVQNELGPLLVRAG   98 (106)
Q Consensus        83 ~~~~~g~L~~~L~~~g   98 (106)
                      +|++.|+|.++|++.-
T Consensus       210 ~LnE~GkL~~lL~~~p  225 (281)
T KOG2824|consen  210 RLNEEGKLGKLLKGIP  225 (281)
T ss_pred             hhhhcchHHHHHhcCC
Confidence            9999999999998764

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=99.54  E-value=3.5e-14  Score=81.87  Aligned_cols=65  Identities=14%  Similarity=0.318  Sum_probs=52.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhC-CCCCccEEEE-CCeEeecch
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG-CQPTVPAVFI-GQRLVGGPN   79 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~-~~~tvP~ifv-~g~~iGg~~   79 (106)
                      +|++|+.++||+|.+++.+|++.+++|..+|++.++...+   .+...+ +..++|++++ ||+.+...+
T Consensus         1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~---~~~~~~~~~~~vP~i~~~~g~~l~~~~   67 (77)
T TIGR02200         1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAAD---RVVSVNNGNMTVPTVKFADGSFLTNPS   67 (77)
T ss_pred             CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHH---HHHHHhCCCceeCEEEECCCeEecCCC
Confidence            4899999999999999999999999999999987765433   444444 6689999976 667776554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.46  E-value=3e-13  Score=76.43  Aligned_cols=58  Identities=14%  Similarity=0.255  Sum_probs=45.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938           12 PVVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      .|++|++++||+|.+++++|+++     ++++..+|++.+++      ...+ .+..++|++++||++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~------l~~~-~~i~~vPti~i~~~~~~   64 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD------LADE-YGVMSVPAIVINGKVEF   64 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh------HHHH-cCCcccCEEEECCEEEE
Confidence            58999999999999999999876     57777788776543      2222 44589999999998775

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised

Probab=99.40  E-value=2.1e-12  Score=78.73  Aligned_cols=81  Identities=12%  Similarity=0.126  Sum_probs=57.9

Q ss_pred             CEEEEEcCCCc------hHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh---------CCCCCccEEEECCeEee
Q 042938           12 PVVIFSKSECC------ICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL---------GCQPTVPAVFIGQRLVG   76 (106)
Q Consensus        12 ~v~vf~~~~Cp------~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~---------~~~~tvP~ifv~g~~iG   76 (106)
                      .|.||+++.-.      .+.++..+|+.++++|+.+||..+++.++   .+.+.         ++..-.|+||+|++++|
T Consensus         2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~---~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G   78 (99)
T PF04908_consen    2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQ---WMRENAGPEEKDPGNGKPLPPQIFNGDEYCG   78 (99)
T ss_dssp             SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHH---HHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred             EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHH---HHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence            46778765533      46688899999999999999998666544   33332         24456689999999999


Q ss_pred             cchHHHhHHHhCCchHHHH
Q 042938           77 GPNQVMSLHVQNELGPLLV   95 (106)
Q Consensus        77 g~~~~~~~~~~g~L~~~L~   95 (106)
                      +++++.++.++++|.+.|+
T Consensus        79 dye~f~ea~E~~~L~~fL~   97 (99)
T PF04908_consen   79 DYEDFEEANENGELEEFLK   97 (99)
T ss_dssp             EHHHHHHHHCTT-HHHHHT
T ss_pred             eHHHHHHHHhhCHHHHHhC
Confidence            9999999999999999885

SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=99.27  E-value=5.7e-11  Score=69.06  Aligned_cols=70  Identities=7%  Similarity=0.105  Sum_probs=54.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iGg~~~~~~~~   85 (106)
                      +++|+.+.||+|.+++.+|.++|++|+.++++..+...   +.+...++..++|++..  +|..+.+...+.+..
T Consensus         2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~---~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL   73 (77)
T cd03041           2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKR---DKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYL   73 (77)
T ss_pred             ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHH---HHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHH
Confidence            68999999999999999999999999999997543222   23445566789999987  367788887776654

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=99.25  E-value=1e-10  Score=65.08  Aligned_cols=68  Identities=9%  Similarity=0.048  Sum_probs=56.5

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      ++|+.++||+|.+++.+|+..+++|+.++++..+....   .+...++..++|.++.+|..+++...+.+.
T Consensus         2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~y   69 (71)
T cd00570           2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLAILEY   69 (71)
T ss_pred             EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            68999999999999999999999999999987655443   244456678999999999999988776553

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=99.20  E-value=1.3e-10  Score=66.22  Aligned_cols=67  Identities=7%  Similarity=0.117  Sum_probs=53.7

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHhHH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMSLH   85 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~~~   85 (106)
                      .+|+.+.||+|.+++.+|..+|++|+.+.++..+.. .   .+ +.++..++|+++.+ |..+++...+.+..
T Consensus         2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-~---~~-~~~~~~~vP~L~~~~~~~l~es~aI~~yL   69 (71)
T cd03037           2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEA-T---PI-RMIGAKQVPILEKDDGSFMAESLDIVAFI   69 (71)
T ss_pred             ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchH-H---HH-HhcCCCccCEEEeCCCeEeehHHHHHHHH
Confidence            589999999999999999999999999988854321 1   22 23555799999987 88999998887653

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=99.17  E-value=4.6e-10  Score=64.87  Aligned_cols=67  Identities=12%  Similarity=0.316  Sum_probs=53.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC----CeEeecchHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG----QRLVGGPNQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~----g~~iGg~~~~~~~   84 (106)
                      ++.+|+.+.||+|.+++.+|..+|++|+.++++... ..+    +. .++..++|+++.+    |..+.....+.+.
T Consensus         1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-~~~----~~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~~y   71 (77)
T cd03040           1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-RKE----IK-WSSYKKVPILRVESGGDGQQLVDSSVIIST   71 (77)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-HHH----HH-HhCCCccCEEEECCCCCccEEEcHHHHHHH
Confidence            578999999999999999999999999999886432 112    22 2556899999987    7788887777654

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.15  E-value=1.4e-10  Score=69.45  Aligned_cols=68  Identities=15%  Similarity=0.316  Sum_probs=50.7

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      +.++++-+.-.|.+|+.++||+|..+.+++++.     ++++..+|++..++      ...+++ ..++|.+++||+.++
T Consensus         5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e------~a~~~~-V~~vPt~vidG~~~~   77 (89)
T cd03026           5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD------EVEERG-IMSVPAIFLNGELFG   77 (89)
T ss_pred             HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH------HHHHcC-CccCCEEEECCEEEE
Confidence            345555555579999999999999999888665     57788888886542      223334 489999999997654

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=99.10  E-value=1.7e-09  Score=61.66  Aligned_cols=68  Identities=13%  Similarity=0.215  Sum_probs=53.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +++|+.+.||+|.+++.+|...|++|+.++++......+    +.+.+...++|++..||..+.....+...
T Consensus         1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~----~~~~~p~~~vP~l~~~~~~l~es~aI~~y   68 (73)
T cd03059           1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPED----LAELNPYGTVPTLVDRDLVLYESRIIMEY   68 (73)
T ss_pred             CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHH----HHhhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            478999999999999999999999999998886543332    33446668999998888877777666554

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=99.09  E-value=1.9e-09  Score=61.54  Aligned_cols=66  Identities=14%  Similarity=0.255  Sum_probs=52.8

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHh
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMS   83 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~   83 (106)
                      ++|+.++||+|.+++.+|.++|++|+.++++......    .+.+.+...++|++..+ |..+.....+.+
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~----~~~~~np~~~vP~L~~~~g~~l~eS~aI~~   68 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPA----EMLAASPKGTVPVLVLGNGTVIEESLDIMR   68 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCH----HHHHHCCCCCCCEEEECCCcEEecHHHHHH
Confidence            6899999999999999999999999999988754333    33345667899999986 887776665544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.04  E-value=2.5e-09  Score=62.10  Aligned_cols=57  Identities=18%  Similarity=0.298  Sum_probs=38.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHhh----cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCe
Q 042938           12 PVVIFSKSECCICFSIQTLICG----FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQR   73 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~   73 (106)
                      .|++|+++|||+|..++..|++    .+..+....||.+.+..    ...+ .+..++|+++++|+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~----~~~~-~~v~~vPt~~~~g~   62 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQ----KAME-YGIMAVPAIVINGD   62 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHH----HHHH-cCCccCCEEEECCE
Confidence            5789999999999999999865    34334434444333222    2223 34588999999996

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=99.01  E-value=6.1e-09  Score=62.09  Aligned_cols=71  Identities=13%  Similarity=0.094  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHhH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMSL   84 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~~   84 (106)
                      ...+++|+.+.||+|.+++.+|...|++|+.++++.....    +.+.+.+...++|++.++ |..+.....+...
T Consensus        16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~----~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y   87 (89)
T cd03055          16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKP----DWFLEKNPQGKVPALEIDEGKVVYESLIICEY   87 (89)
T ss_pred             CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCc----HHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence            3468999999999999999999999999999988764322    234445667899999998 7888777666543

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.99  E-value=6.5e-09  Score=65.59  Aligned_cols=76  Identities=11%  Similarity=0.149  Sum_probs=51.2

Q ss_pred             HHHhhhhCCC--EEEEEcCCCchHHHHHHHHhh----cCCCceEEEcccCC--Cc---hHHHHHHHHhC---CCCCccEE
Q 042938            3 MVTRMVNEKP--VVIFSKSECCICFSIQTLICG----FGANPTVYELDQIP--NG---PQIERALQQLG---CQPTVPAV   68 (106)
Q Consensus         3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~vd~~~--~~---~~~~~~l~~~~---~~~tvP~i   68 (106)
                      .+.+.++.+.  ++.|+++|||+|+.+...|.+    .++++-.+|+|.+.  +.   .++.+....++   +..++|++
T Consensus        15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~   94 (122)
T TIGR01295        15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTF   94 (122)
T ss_pred             HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEE
Confidence            4566666544  777999999999998877755    45778889998653  21   24555555543   23458886


Q ss_pred             --EECCeEeecc
Q 042938           69 --FIGQRLVGGP   78 (106)
Q Consensus        69 --fv~g~~iGg~   78 (106)
                        |.+|+.++..
T Consensus        95 v~~k~Gk~v~~~  106 (122)
T TIGR01295        95 VHITDGKQVSVR  106 (122)
T ss_pred             EEEeCCeEEEEE
Confidence              6789766544

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=98.98  E-value=4.1e-09  Score=59.91  Aligned_cols=70  Identities=7%  Similarity=0.104  Sum_probs=51.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMS   83 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~   83 (106)
                      +.+|+.+.||+|.+++.+|..++++|+.+.++.......- +.+.+.+...++|++.+ ||..+.....+..
T Consensus         1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~-~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~   71 (74)
T cd03051           1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRS-PEFLAKNPAGTVPVLELDDGTVITESVAICR   71 (74)
T ss_pred             CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCC-HHHHhhCCCCCCCEEEeCCCCEEecHHHHHH
Confidence            3689999999999999999999999999888754321111 23445577789999987 6666666655544

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.96  E-value=1.3e-08  Score=58.17  Aligned_cols=71  Identities=11%  Similarity=0.173  Sum_probs=53.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +.+|+.+.||+|.+++.+|...|++|+.++++...... ..+.+.+.+...++|.+..+|..+.....+...
T Consensus         1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y   71 (74)
T cd03045           1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEH-LKPEFLKLNPQHTVPTLVDNGFVLWESHAILIY   71 (74)
T ss_pred             CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCc-CCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence            46899999999999999999999999999887533211 112344556668999999988777766655543

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.96  E-value=2.2e-09  Score=62.40  Aligned_cols=54  Identities=17%  Similarity=0.428  Sum_probs=40.0

Q ss_pred             EEEEEcCCCchHHHH----HHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEe
Q 042938           13 VVIFSKSECCICFSI----QTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~----~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i   75 (106)
                      |.+|+ +|||+|..+    ++++++++.+++.++|+..   .+    +.+++ ..++|++++||+.+
T Consensus         3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~---~~----a~~~~-v~~vPti~i~G~~~   60 (76)
T TIGR00412         3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDM---NE----ILEAG-VTATPGVAVDGELV   60 (76)
T ss_pred             EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH---HH----HHHcC-CCcCCEEEECCEEE
Confidence            55665 999999999    5567778888888888831   12    22334 58999999999654

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=98.95  E-value=2.4e-09  Score=65.71  Aligned_cols=48  Identities=15%  Similarity=0.317  Sum_probs=39.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC-chHHHHHHHHhC
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN-GPQIERALQQLG   60 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~-~~~~~~~l~~~~   60 (106)
                      |+||++++||+|++++.+|++.|++|+++|+..++. ..++.+.+...+
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~~   49 (105)
T cd02977           1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKLG   49 (105)
T ss_pred             CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhcC
Confidence            579999999999999999999999999999987654 445666654433

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=98.94  E-value=2.2e-09  Score=66.69  Aligned_cols=47  Identities=13%  Similarity=0.355  Sum_probs=39.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCc-hHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNG-PQIERALQQL   59 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~-~~~~~~l~~~   59 (106)
                      |+||+.++||+|++++++|++.|++|+++|+..++.. .++.+.+...
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~   48 (111)
T cd03036           1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKS   48 (111)
T ss_pred             CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHc
Confidence            5799999999999999999999999999999887654 4466655543

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=98.94  E-value=8.1e-09  Score=65.98  Aligned_cols=47  Identities=17%  Similarity=0.265  Sum_probs=38.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCc-hHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNG-PQIERALQQL   59 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~-~~~~~~l~~~   59 (106)
                      |+||+.++||+|++++++|++.|++|+.+|+..++.. .++.+.++..
T Consensus         2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~   49 (131)
T PRK01655          2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRMT   49 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHHh
Confidence            7899999999999999999999999999999776543 4455555543

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=98.90  E-value=1.6e-08  Score=58.35  Aligned_cols=67  Identities=9%  Similarity=0.136  Sum_probs=56.3

Q ss_pred             EEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           15 IFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        15 vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +|+.++||+|.+++-+|...|++|+.++++......    .+...+...++|++..||..+.+...+.+..
T Consensus         1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~----~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL   67 (75)
T PF13417_consen    1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRP----EFLKLNPKGKVPVLVDDGEVLTDSAAIIEYL   67 (75)
T ss_dssp             EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSH----HHHHHSTTSBSSEEEETTEEEESHHHHHHHH
T ss_pred             CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchh----HHHhhcccccceEEEECCEEEeCHHHHHHHH
Confidence            689999999999999999999999999998665422    3444567789999999999999998887654

...

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.88  E-value=3.3e-08  Score=56.08  Aligned_cols=70  Identities=14%  Similarity=0.267  Sum_probs=53.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      +++|+.+.||+|.+++.+|...|++|+.++++...... ..+.+.+.+...++|.+..+|..+.....+..
T Consensus         1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~   70 (73)
T cd03056           1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGET-RTPEFLALNPNGEVPVLELDGRVLAESNAILV   70 (73)
T ss_pred             CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCccc-CCHHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence            36899999999999999999999999999887532211 11233445666899999999988877666554

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PHA02125 thioredoxin-like protein

Probab=98.88  E-value=1.4e-08  Score=58.73  Aligned_cols=55  Identities=11%  Similarity=0.270  Sum_probs=39.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i   75 (106)
                      |++|+.+|||+|+.++.+|++.  .+..++||.++.. +   ...+ .+..++|++. +|+.+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~~-~---l~~~-~~v~~~PT~~-~g~~~   56 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEGV-E---LTAK-HHIRSLPTLV-NTSTL   56 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCCH-H---HHHH-cCCceeCeEE-CCEEE
Confidence            7899999999999999999865  4566677655432 2   3333 3458999987 67544

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=98.83  E-value=4.1e-08  Score=61.27  Aligned_cols=47  Identities=11%  Similarity=0.224  Sum_probs=39.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC-CchHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIP-NGPQIERALQQL   59 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~-~~~~~~~~l~~~   59 (106)
                      |++|+.++||+|++++.+|++.|++|+.+|+..++ +..++.+.++..
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~   49 (115)
T cd03032           2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLT   49 (115)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHh
Confidence            78999999999999999999999999999997654 445566666554

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=98.81  E-value=5.3e-08  Score=62.31  Aligned_cols=47  Identities=19%  Similarity=0.273  Sum_probs=38.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC-chHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN-GPQIERALQQL   59 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~-~~~~~~~l~~~   59 (106)
                      |+||+.++|+.|++++++|++.|++|+++|+..++- .+++.+.++..
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~   49 (132)
T PRK13344          2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTKT   49 (132)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHHh
Confidence            789999999999999999999999999999976543 34455555543

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.80  E-value=4.9e-08  Score=57.32  Aligned_cols=53  Identities=13%  Similarity=0.362  Sum_probs=38.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcC----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC
Q 042938           12 PVVIFSKSECCICFSIQTLICGFG----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ   72 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g   72 (106)
                      ++++|++++|+.|..++..|.+..    ++++.+||+.++.      ...+ .+ ..+|++.++|
T Consensus         1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~------l~~~-Y~-~~IPVl~~~~   57 (81)
T PF05768_consen    1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE------LFEK-YG-YRIPVLHIDG   57 (81)
T ss_dssp             -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH------HHHH-SC-TSTSEEEETT
T ss_pred             CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH------HHHH-hc-CCCCEEEEcC
Confidence            489999999999999999998754    4466777774332      2223 43 6899999999

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=98.78  E-value=1.6e-08  Score=63.26  Aligned_cols=48  Identities=10%  Similarity=0.251  Sum_probs=39.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCc-hHHHHHHHHhC
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNG-PQIERALQQLG   60 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~-~~~~~~l~~~~   60 (106)
                      |++|+.++||+|++++++|++.|++|+.+|+..++.. .++.+.++..+
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~   49 (117)
T TIGR01617         1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLE   49 (117)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcC
Confidence            5799999999999999999999999999999876554 44666665544

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=98.77  E-value=5.1e-08  Score=60.07  Aligned_cols=48  Identities=15%  Similarity=0.263  Sum_probs=40.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG   60 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~   60 (106)
                      |+||+.|+|+.|++++++|++.|++|+++|+..+ +..+++.+.+...+
T Consensus         1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g   49 (105)
T cd03035           1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVG   49 (105)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhC
Confidence            5799999999999999999999999999999775 45555666665443

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>PRK12559 transcriptional regulator Spx; Provisional

Probab=98.77  E-value=8e-08  Score=61.42  Aligned_cols=46  Identities=13%  Similarity=0.235  Sum_probs=38.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC-CchHHHHHHHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIP-NGPQIERALQQ   58 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~-~~~~~~~~l~~   58 (106)
                      |+||+.++|+.|++++++|++.|++|+.+|+..++ ..+++.+.++.
T Consensus         2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~   48 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRL   48 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence            78999999999999999999999999999997654 44456666554

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.72  E-value=5.1e-08  Score=60.60  Aligned_cols=59  Identities=22%  Similarity=0.390  Sum_probs=39.2

Q ss_pred             HhhhhCCCEEEE-EcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938            5 TRMVNEKPVVIF-SKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus         5 ~~~~~~~~v~vf-~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      +.+.....+++| +.+|||+|..++++|++..     +++..+|+|..+   +   ...+ .+..++|++++
T Consensus        17 ~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~---~---l~~~-~~v~~vPt~~i   81 (113)
T cd02975          17 KEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK---E---KAEK-YGVERVPTTIF   81 (113)
T ss_pred             HHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH---H---HHHH-cCCCcCCEEEE
Confidence            334444556555 7899999999999997764     345666666532   2   2223 34589999977

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.69  E-value=3.6e-07  Score=52.27  Aligned_cols=68  Identities=9%  Similarity=0.053  Sum_probs=51.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC-CCCccEEEECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC-QPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~-~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +.+|+.+.||+|.+++.+|...|++|+.++++......+    +.+.+. ..++|.+..+|..+.....+.+.
T Consensus         1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~----~~~~~p~~~~vP~l~~~~~~l~eS~aI~~y   69 (74)
T cd03058           1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSEL----LLASNPVHKKIPVLLHNGKPICESLIIVEY   69 (74)
T ss_pred             CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHH----HHHhCCCCCCCCEEEECCEEeehHHHHHHH
Confidence            468999999999999999999999999988776432222    233454 37999999888877777666554

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,

>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

Probab=98.67  E-value=3.9e-07  Score=52.20  Aligned_cols=72  Identities=7%  Similarity=-0.004  Sum_probs=55.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +++|+.+.||+|.+++-+|...|++|+.+.++..... ...+.+.+.+...++|.+..+|..+.....+....
T Consensus         2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL   73 (76)
T cd03053           2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGE-HKSPEHLARNPFGQIPALEDGDLKLFESRAITRYL   73 (76)
T ss_pred             eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccc-cCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            5789999999999999999999999999888764221 11123445577789999999988888777666543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t

>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins

Probab=98.66  E-value=2.8e-07  Score=52.49  Aligned_cols=56  Identities=11%  Similarity=0.065  Sum_probs=47.1

Q ss_pred             CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +.||+|.+++.+|...|++|+.++++...           .+...++|++..+|+.+.++..+....
T Consensus        14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~vP~l~~~g~~l~es~~I~~yL   69 (72)
T cd03054          14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPTGKLPFLELNGEKIADSEKIIEYL   69 (72)
T ss_pred             CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCCcccCEEEECCEEEcCHHHHHHHH
Confidence            47999999999999999999999887532           244568999999999999988776654

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins

Probab=98.65  E-value=3.3e-07  Score=55.17  Aligned_cols=63  Identities=14%  Similarity=0.202  Sum_probs=50.6

Q ss_pred             CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ..||||++++-.|.++|++|+.+++|.....++    +.+.+....+|++..+|..+...+.+.+..
T Consensus        20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~----~~~~nP~g~vPvL~~~~~~i~eS~~I~eYL   82 (91)
T cd03061          20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPED----LKDLAPGTQPPFLLYNGEVKTDNNKIEEFL   82 (91)
T ss_pred             CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHH----HHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence            459999999999999999999999987654433    344466689999999999888887776653

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=98.64  E-value=3.8e-07  Score=52.43  Aligned_cols=70  Identities=16%  Similarity=0.294  Sum_probs=54.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      +++|..+.||+|.+++-+|.++|++|+.++++....... .+.+.+.+...++|.+..||..+.....+..
T Consensus         1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~-~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~   70 (73)
T cd03052           1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHN-EPWFMRLNPTGEVPVLIHGDNIICDPTQIID   70 (73)
T ss_pred             CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccC-CHHHHHhCcCCCCCEEEECCEEEEcHHHHHH
Confidence            468999999999999999999999999998876432111 1234556777899999999988877766654

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>PHA02278 thioredoxin-like protein

Probab=98.61  E-value=5.4e-07  Score=55.29  Aligned_cols=71  Identities=17%  Similarity=0.328  Sum_probs=44.3

Q ss_pred             HHHhhhhCC-C-EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938            3 MVTRMVNEK-P-VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ   72 (106)
Q Consensus         3 ~~~~~~~~~-~-v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g   72 (106)
                      .+.+.++.. + ++-|+.+||+.|+.+.+.|++..      +++..+|+|.++....  +...++. ..++|++  |-||
T Consensus         6 ~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~--~l~~~~~-I~~iPT~i~fk~G   82 (103)
T PHA02278          6 DLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDRE--KAVKLFD-IMSTPVLIGYKDG   82 (103)
T ss_pred             HHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccH--HHHHHCC-CccccEEEEEECC
Confidence            455555533 3 45589999999999998886642      3466677776532111  1222334 4788886  6788


Q ss_pred             eEee
Q 042938           73 RLVG   76 (106)
Q Consensus        73 ~~iG   76 (106)
                      +.++
T Consensus        83 ~~v~   86 (103)
T PHA02278         83 QLVK   86 (103)
T ss_pred             EEEE
Confidence            7653

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=98.61  E-value=1.7e-07  Score=58.54  Aligned_cols=48  Identities=15%  Similarity=0.207  Sum_probs=40.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHh
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQL   59 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~   59 (106)
                      .|++|+.|.|+.|++++++|++.|++|+++|+-.+ ++..++.+.++..
T Consensus         1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~   49 (113)
T cd03033           1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDL   49 (113)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHc
Confidence            47899999999999999999999999999998665 4556666666643

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.59  E-value=7.5e-07  Score=50.73  Aligned_cols=67  Identities=4%  Similarity=0.078  Sum_probs=51.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhh--cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICG--FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMS   83 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~--~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~   83 (106)
                      +.+|+.+.||+|.+++-+|..  .|++|+.+.++......+   + ...+...++|.+.. ||..+.....+..
T Consensus         1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~---~-~~~~p~~~vP~l~~~~g~~l~es~aI~~   70 (73)
T cd03049           1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDES---L-LAVNPLGKIPALVLDDGEALFDSRVICE   70 (73)
T ss_pred             CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChH---H-HHhCCCCCCCEEEECCCCEEECHHHHHh
Confidence            368999999999999999999  889999999885433333   2 33466689999975 7777777665544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=98.58  E-value=4.5e-07  Score=56.68  Aligned_cols=67  Identities=16%  Similarity=0.319  Sum_probs=43.8

Q ss_pred             HHHhhhh--CCC--EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EE
Q 042938            3 MVTRMVN--EKP--VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FI   70 (106)
Q Consensus         3 ~~~~~~~--~~~--v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv   70 (106)
                      .+.+.+.  ..+  |+-|+.+|||.|+.+...|+++.      +.+-.+|+|..++.      ..+++ ..++|++  |-
T Consensus         4 ~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~l------a~~~~-V~~iPTf~~fk   76 (114)
T cd02954           4 AVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDF------NKMYE-LYDPPTVMFFF   76 (114)
T ss_pred             HHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHH------HHHcC-CCCCCEEEEEE
Confidence            4555564  233  44499999999999999886653      34556677765532      22224 4788886  67


Q ss_pred             CCeEee
Q 042938           71 GQRLVG   76 (106)
Q Consensus        71 ~g~~iG   76 (106)
                      +|+.++
T Consensus        77 ~G~~v~   82 (114)
T cd02954          77 RNKHMK   82 (114)
T ss_pred             CCEEEE
Confidence            887664

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.58  E-value=4.8e-08  Score=74.51  Aligned_cols=67  Identities=16%  Similarity=0.244  Sum_probs=46.2

Q ss_pred             HHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCC-----ceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938            3 MVTRMVNEKPVVIFSKSECCICFSIQTLICGFGAN-----PTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus         3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~-----~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      .++++-+...|.+|.+++||||..+...++++.+.     .+.+|....+      +...+++. .+||.+|+||+.++
T Consensus       111 ~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~------~~~~~~~v-~~VP~~~i~~~~~~  182 (515)
T TIGR03140       111 RIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQ------DEVEALGI-QGVPAVFLNGEEFH  182 (515)
T ss_pred             HHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCH------HHHHhcCC-cccCEEEECCcEEE
Confidence            34554455678999999999999999998776543     3333333222      34445555 79999999997654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.58  E-value=5.2e-08  Score=74.31  Aligned_cols=67  Identities=12%  Similarity=0.222  Sum_probs=46.6

Q ss_pred             HHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCC-----CceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938            3 MVTRMVNEKPVVIFSKSECCICFSIQTLICGFGA-----NPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus         3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v-----~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      .++++-+...|.+|.+++||||..+...+++..+     +.+.+|....++      ...+++. .+||++|+||+.+.
T Consensus       110 ~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~------~~~~~~v-~~VP~~~i~~~~~~  181 (517)
T PRK15317        110 QIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD------EVEARNI-MAVPTVFLNGEEFG  181 (517)
T ss_pred             HHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh------HHHhcCC-cccCEEEECCcEEE
Confidence            4555555667899999999999999998877643     344444443332      4444454 79999999997553

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=98.55  E-value=6.7e-07  Score=54.23  Aligned_cols=64  Identities=13%  Similarity=0.224  Sum_probs=38.4

Q ss_pred             HHHhhhhCCC--EEEEEcCCCchHHHHHHHH-------hhc--CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938            3 MVTRMVNEKP--VVIFSKSECCICFSIQTLI-------CGF--GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus         3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L-------~~~--~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      .+.++++.++  ++.|+.+|||+|.+....+       ..+  ++.+-.+|++.++.  ...+...+++ ..++|+++
T Consensus         3 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~--~~~~~~~~~~-i~~~Pti~   77 (104)
T cd02953           3 ALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDP--EITALLKRFG-VFGPPTYL   77 (104)
T ss_pred             HHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCH--HHHHHHHHcC-CCCCCEEE
Confidence            4566676666  5669999999999987554       112  23333445544332  2234444545 48899874

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.51  E-value=1.7e-07  Score=54.29  Aligned_cols=54  Identities=17%  Similarity=0.389  Sum_probs=36.4

Q ss_pred             CEEEEEcCCCchHHHHHHHH----hhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeE
Q 042938           12 PVVIFSKSECCICFSIQTLI----CGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRL   74 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~   74 (106)
                      +|.+ ..++||+|..+.+++    .+.+++++.+++   .+..+   . .+++ ..++|.+++||+.
T Consensus         2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~---~-~~yg-v~~vPalvIng~~   59 (76)
T PF13192_consen    2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEE---I-EKYG-VMSVPALVINGKV   59 (76)
T ss_dssp             EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHH---H-HHTT--SSSSEEEETTEE
T ss_pred             EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHH---H-HHcC-CCCCCEEEECCEE
Confidence            3566 466799999777655    556777777665   23333   3 4445 4999999999974

...

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.50  E-value=3.7e-07  Score=62.52  Aligned_cols=54  Identities=17%  Similarity=0.295  Sum_probs=37.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC
Q 042938           12 PVVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ   72 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g   72 (106)
                      .|++|+.+|||+|..++.+++++.     +.+..+|++..++      ...+ .+..++|++++++
T Consensus       136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~------~~~~-~~V~~vPtl~i~~  194 (215)
T TIGR02187       136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD------LAEK-YGVMSVPKIVINK  194 (215)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH------HHHH-hCCccCCEEEEec
Confidence            467799999999999999887753     3444455554332      2222 3458999998875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.50  E-value=2.3e-06  Score=48.92  Aligned_cols=69  Identities=12%  Similarity=0.025  Sum_probs=54.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      ++++|+.+.|+.|.+++-+|...|++|+.+.++..    ...+.+...+...++|++..||..+.+...+...
T Consensus         1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y   69 (73)
T cd03076           1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE----EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRH   69 (73)
T ss_pred             CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH----HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            46789999999999999999999999999988752    1122344556668999999999888887766654

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w

>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.47  E-value=1.7e-06  Score=48.97  Aligned_cols=70  Identities=11%  Similarity=0.182  Sum_probs=52.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      +++|+.+.||.|.+++.+|...|++|+.+.++..+.... .+.+.+.+...++|++..+|..+.....+..
T Consensus         1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~-~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~   70 (73)
T cd03042           1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQL-SPAYRALNPQGLVPTLVIDGLVLTQSLAIIE   70 (73)
T ss_pred             CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcC-ChHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence            368889999999999999999999999988876432111 1233445667899999999888777665544

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.

>KOG4023 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=3e-07  Score=55.58  Aligned_cols=86  Identities=15%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             CEEEEEcCCCchHH------HHHHHHhhcCCCceEEEcccCCCchH-----HHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938           12 PVVIFSKSECCICF------SIQTLICGFGANPTVYELDQIPNGPQ-----IERALQQLGCQPTVPAVFIGQRLVGGPNQ   80 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~------~~~~~L~~~~v~~~~v~vd~~~~~~~-----~~~~l~~~~~~~tvP~ifv~g~~iGg~~~   80 (106)
                      .|.+|+++.-+.-.      ++..+|+...+.+..+||...++.+.     +.+..+..+|.+..|+||-++++.|+++.
T Consensus         3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~   82 (108)
T KOG4023|consen    3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL   82 (108)
T ss_pred             ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence            56777776655432      56688899999999999988766544     22333334667899999999999999999


Q ss_pred             HHhHHHhCCchHHHHhc
Q 042938           81 VMSLHVQNELGPLLVRA   97 (106)
Q Consensus        81 ~~~~~~~g~L~~~L~~~   97 (106)
                      +.+..+++.|.+.|+-+
T Consensus        83 F~ea~E~ntl~eFL~la   99 (108)
T KOG4023|consen   83 FFEAVEQNTLQEFLGLA   99 (108)
T ss_pred             HHHHHHHHHHHHHHccC
Confidence            99999999999988643

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.43  E-value=2.2e-06  Score=53.25  Aligned_cols=68  Identities=16%  Similarity=0.212  Sum_probs=43.2

Q ss_pred             HHHhhhhCC-C-EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938            3 MVTRMVNEK-P-VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR   73 (106)
Q Consensus         3 ~~~~~~~~~-~-v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~   73 (106)
                      .+.+.++.. . ++.|+.+||+.|+.+...|.++     ++.+..+|++..++      ...+++ ..++|++  |-+|+
T Consensus        14 ~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~------l~~~~~-v~~vPt~l~fk~G~   86 (113)
T cd02989          14 EFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF------LVEKLN-IKVLPTVILFKNGK   86 (113)
T ss_pred             HHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH------HHHHCC-CccCCEEEEEECCE
Confidence            345555443 3 4568999999999999888664     34455555555432      223334 4788886  67897


Q ss_pred             Eeec
Q 042938           74 LVGG   77 (106)
Q Consensus        74 ~iGg   77 (106)
                      .++-
T Consensus        87 ~v~~   90 (113)
T cd02989          87 TVDR   90 (113)
T ss_pred             EEEE
Confidence            6643

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.42  E-value=2.6e-06  Score=49.20  Aligned_cols=56  Identities=20%  Similarity=0.318  Sum_probs=39.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhh-----cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICG-----FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~-----~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      +++|++++|++|..+.+.+.+     .++.+..+|.+..+.      ....++ ...+|++++  +|+.+
T Consensus        14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~-v~~~P~~~~~~~g~~~   76 (93)
T cd02947          14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE------LAEEYG-VRSIPTFLFFKNGKEV   76 (93)
T ss_pred             EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChh------HHHhcC-cccccEEEEEECCEEE
Confidence            677999999999999999977     556666677665332      233334 378998765  77644

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B

Probab=98.42  E-value=1e-06  Score=50.20  Aligned_cols=67  Identities=12%  Similarity=0.121  Sum_probs=47.2

Q ss_pred             CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHHH
Q 042938           20 ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLHV   86 (106)
Q Consensus        20 ~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~~   86 (106)
                      .||||.+++-+|..+|++|+...++..+....-.+.+.+.++..+||.+.. +|..+.....+.+..+
T Consensus         1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~   68 (70)
T PF13409_consen    1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE   68 (70)
T ss_dssp             T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred             CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence            499999999999999999998777432222111123445577789999997 8899888887776543

...

>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs

Probab=98.40  E-value=3.9e-06  Score=48.21  Aligned_cols=62  Identities=6%  Similarity=0.094  Sum_probs=49.8

Q ss_pred             EEEEEcC-------CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKS-------ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~-------~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +++|..+       .||+|.+++.+|...|++|+.++++..           ..+...++|.+..+|+.+.+...+.+..
T Consensus         2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL   70 (75)
T cd03080           2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPKGKLPFIELNGEKIADSELIIDHL   70 (75)
T ss_pred             EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence            4677776       579999999999999999998887642           2255678999999999988887776643

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.39  E-value=6.2e-07  Score=69.06  Aligned_cols=65  Identities=12%  Similarity=0.305  Sum_probs=46.3

Q ss_pred             HHHhhhhCCCEEEEEcCCCchHHHHHHHHhh----c-CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeE
Q 042938            3 MVTRMVNEKPVVIFSKSECCICFSIQTLICG----F-GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRL   74 (106)
Q Consensus         3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~----~-~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~   74 (106)
                      .++++-+...|.+|..++||+|.++.+.+++    . +++.+.+|+...++      ...+++ ..+||.+++||+.
T Consensus       470 ~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~------~~~~~~-v~~vP~~~i~~~~  539 (555)
T TIGR03143       470 KIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD------LKDEYG-IMSVPAIVVDDQQ  539 (555)
T ss_pred             HHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH------HHHhCC-ceecCEEEECCEE
Confidence            3444434556899999999999988776644    3 57778888776643      333444 4899999999963

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=98.38  E-value=3.2e-06  Score=51.45  Aligned_cols=70  Identities=9%  Similarity=0.053  Sum_probs=42.9

Q ss_pred             hHHHhhhhC--CC--EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EE
Q 042938            2 DMVTRMVNE--KP--VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FI   70 (106)
Q Consensus         2 ~~~~~~~~~--~~--v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv   70 (106)
                      +.+.+.++.  ++  ++.|+.+||+.|+.....|.++     ++.+-.+|+|.++.   ..+...+++ ...+|++  |-
T Consensus         4 ~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~---~~~l~~~~~-V~~~Pt~~~~~   79 (103)
T cd02985           4 EELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDS---TMELCRREK-IIEVPHFLFYK   79 (103)
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChH---HHHHHHHcC-CCcCCEEEEEe
Confidence            345565643  23  4559999999999998888664     34444555555432   223444444 4788875  45


Q ss_pred             CCeEe
Q 042938           71 GQRLV   75 (106)
Q Consensus        71 ~g~~i   75 (106)
                      +|+.+
T Consensus        80 ~G~~v   84 (103)
T cd02985          80 DGEKI   84 (103)
T ss_pred             CCeEE
Confidence            88654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha

Probab=98.37  E-value=3.3e-06  Score=47.93  Aligned_cols=69  Identities=10%  Similarity=-0.039  Sum_probs=52.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +++|..+.|+.|.+++-+|...|++|+.+.++......   ..+...+...++|.+..+|..+.....+...
T Consensus         1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~---~~~~~~~p~~~vP~L~~~~~~l~es~aI~~y   69 (72)
T cd03039           1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPE---LDLKPTLPFGQLPVLEIDGKKLTQSNAILRY   69 (72)
T ss_pred             CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhh---hhhccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence            36888899999999999999999999999887532111   1234456678999999999888777665543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma

>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs

Probab=98.37  E-value=9.1e-06  Score=47.12  Aligned_cols=68  Identities=9%  Similarity=0.158  Sum_probs=51.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC--CchHHHHHHHHhCCCCCccEEEEC---CeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIP--NGPQIERALQQLGCQPTVPAVFIG---QRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~--~~~~~~~~l~~~~~~~tvP~ifv~---g~~iGg~~~~~~~   84 (106)
                      +++|+.+. |+|.+++.+|...|++|+.+.++...  ...+   .+.+.+...++|.+..+   |..+.....+...
T Consensus         2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~---~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~y   74 (81)
T cd03048           2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKP---EFLKINPNGRIPAIVDHNGTPLTVFESGAILLY   74 (81)
T ss_pred             eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCH---HHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHH
Confidence            57898886 99999999999999999988887532  2222   33345666899999887   7777776666554

Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and

>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor

Probab=98.37  E-value=2.6e-06  Score=49.90  Aligned_cols=65  Identities=14%  Similarity=0.079  Sum_probs=49.1

Q ss_pred             CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHhHH
Q 042938           19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMSLH   85 (106)
Q Consensus        19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~~~   85 (106)
                      ++||+|.+++.+|...|++|+.+.++..... .....+ ..+...++|.+..+ |..+.+...+....
T Consensus        14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~-~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL   79 (84)
T cd03038          14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIP-PILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYL   79 (84)
T ss_pred             CcCChhHHHHHHHHhCCCCCeEEEecCCCcc-cccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHH
Confidence            6799999999999999999999888754221 222233 44666899999988 88888887776653

This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.2e-06  Score=62.54  Aligned_cols=65  Identities=25%  Similarity=0.337  Sum_probs=46.6

Q ss_pred             hCCCE-EEEEcCCCchHHHHHHHHhhcC----CC--ceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecch
Q 042938            9 NEKPV-VIFSKSECCICFSIQTLICGFG----AN--PTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGPN   79 (106)
Q Consensus         9 ~~~~v-~vf~~~~Cp~C~~~~~~L~~~~----v~--~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~~   79 (106)
                      ...|| |.|+.|||+.|......|+..-    -.  .-.+|+|.++.-.      .+++ ..++|+|  |++|++|-||-
T Consensus        42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vA------aqfg-iqsIPtV~af~dGqpVdgF~  114 (304)
T COG3118          42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVA------AQFG-VQSIPTVYAFKDGQPVDGFQ  114 (304)
T ss_pred             cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHH------HHhC-cCcCCeEEEeeCCcCccccC
Confidence            34455 5689999999999999997753    23  3456777766522      2335 4899987  79999998885


Q ss_pred             H
Q 042938           80 Q   80 (106)
Q Consensus        80 ~   80 (106)
                      -
T Consensus       115 G  115 (304)
T COG3118         115 G  115 (304)
T ss_pred             C
Confidence            3

>TIGR02182 GRXB Glutaredoxin, GrxB family

Probab=98.35  E-value=3.2e-06  Score=57.54  Aligned_cols=68  Identities=9%  Similarity=0.048  Sum_probs=53.1

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-ECCeEeecchHHHhHHH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IGQRLVGGPNQVMSLHV   86 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~~~~~~~~~   86 (106)
                      ++|+.+.||+|.+++-+|..+|++|+.++++..+.. .   . .+.+...++|++. .||..+.+...+.....
T Consensus         1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~---~-~~~np~g~vP~l~~~~g~~l~es~~I~~yL~   69 (209)
T TIGR02182         1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-T---P-IRMIGAKQVPILQKDDGRAMPESLDIVAYFD   69 (209)
T ss_pred             CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch-h---H-HHhcCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence            368899999999999999999999999887654321 1   2 2335567999997 78889999888877544

This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.

>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis

Probab=98.34  E-value=6.3e-06  Score=47.27  Aligned_cols=68  Identities=9%  Similarity=-0.050  Sum_probs=50.9

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHh
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMS   83 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~   83 (106)
                      ++|+.+.||+|.+++-+|...|++|+.++++.......  +.+.+.+...++|++..+ |..+.....+.+
T Consensus         2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~--~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~   70 (75)
T cd03044           2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKT--PEFLKKFPLGKVPAFEGADGFCLFESNAIAY   70 (75)
T ss_pred             eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCC--HHHHHhCCCCCCCEEEcCCCCEEeeHHHHHH
Confidence            47899999999999999999999999998886532211  234455777899999984 766665554444

EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot

>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]

Probab=98.34  E-value=2.3e-06  Score=60.86  Aligned_cols=68  Identities=18%  Similarity=0.374  Sum_probs=54.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++++|--.+||+|-+++.+|+-.+++|..++|+....  +   .+ +.+....||.+.+.|+.+-...-++++.
T Consensus        90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r--~---eI-k~SsykKVPil~~~Geqm~dSsvIIs~l  157 (370)
T KOG3029|consen   90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLR--Q---EI-KWSSYKKVPILLIRGEQMVDSSVIISLL  157 (370)
T ss_pred             eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhh--h---hc-cccccccccEEEeccceechhHHHHHHH
Confidence            6899999999999999999999999999999986432  1   11 2355689999999998777777666654

>PRK09381 trxA thioredoxin; Provisional

Probab=98.33  E-value=2.6e-06  Score=51.98  Aligned_cols=59  Identities=19%  Similarity=0.309  Sum_probs=38.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecc
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGP   78 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~   78 (106)
                      ++.|+.+|||+|..+...|++.    +  +.+-.+|++..+.      ...+++ ..++|++  |-+|+.++.+
T Consensus        25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~------~~~~~~-v~~~Pt~~~~~~G~~~~~~   91 (109)
T PRK09381         25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG------TAPKYG-IRGIPTLLLFKNGEVAATK   91 (109)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChh------HHHhCC-CCcCCEEEEEeCCeEEEEe
Confidence            5668999999999998777653    2  3344555554432      222334 4889987  4588876543

>PRK10387 glutaredoxin 2; Provisional

Probab=98.32  E-value=4.1e-06  Score=56.45  Aligned_cols=69  Identities=9%  Similarity=0.105  Sum_probs=52.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE-EECCeEeecchHHHhHHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV-FIGQRLVGGPNQVMSLHV   86 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i-fv~g~~iGg~~~~~~~~~   86 (106)
                      +++|+.+.||+|.+++-+|..+|++|+.++++..+...    .+ ..++..+||++ ..||..+.....+....+
T Consensus         1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~----~~-~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~   70 (210)
T PRK10387          1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT----PI-RMIGQKQVPILQKDDGSYMPESLDIVHYID   70 (210)
T ss_pred             CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh----HH-HhcCCcccceEEecCCeEecCHHHHHHHHH
Confidence            46899999999999999999999999999886543211    12 23555799999 567888888877766543

>PRK09481 sspA stringent starvation protein A; Provisional

Probab=98.31  E-value=8.5e-06  Score=55.31  Aligned_cols=70  Identities=11%  Similarity=0.144  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      ...+++|+.+.||+|.+++-+|.++|++|+.+.++......    .+.+.+...+||++..||..+-...-+..
T Consensus         8 ~~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~----~~~~~nP~g~VPvL~~~g~~l~ES~AIl~   77 (211)
T PRK09481          8 RSVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQ----DLIDLNPYQSVPTLVDRELTLYESRIIME   77 (211)
T ss_pred             CCeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCH----HHHHhCCCCCCCEEEECCEEeeCHHHHHH
Confidence            33588999999999999999999999999999988643222    23345666899999999887766665554

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.31  E-value=8.9e-06  Score=50.24  Aligned_cols=64  Identities=13%  Similarity=0.157  Sum_probs=41.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~~~~~~~   84 (106)
                      ++.|+.+||+.|+.+...|+++     ++.|-.+|++..    +   ...+++ ..++|++  |.+|+.++.......+
T Consensus        28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~----~---l~~~~~-i~~~Pt~~~f~~G~~v~~~~G~~~~   98 (113)
T cd02957          28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA----F---LVNYLD-IKVLPTLLVYKNGELIDNIVGFEEL   98 (113)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh----H---HHHhcC-CCcCCEEEEEECCEEEEEEecHHHh
Confidence            4569999999999999888664     234444555433    2   222334 4788876  7799877655444333

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.30  E-value=2.2e-06  Score=45.53  Aligned_cols=56  Identities=18%  Similarity=0.332  Sum_probs=39.7

Q ss_pred             EEEEEcCCCchHHHHHHHHh-----hcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC
Q 042938           13 VVIFSKSECCICFSIQTLIC-----GFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ   72 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~-----~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g   72 (106)
                      +++|+.++||+|.++...+.     ..++.+..++++.......   .... ....++|++++.+
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~P~~~~~~   61 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEK---ELKR-YGVGGVPTLVVFG   61 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhh---HHHh-CCCccccEEEEEe
Confidence            47899999999999999999     4456677777766554322   1222 3448899998765

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=98.29  E-value=3.1e-06  Score=50.89  Aligned_cols=64  Identities=16%  Similarity=0.196  Sum_probs=41.3

Q ss_pred             HHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcC-------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCe
Q 042938            3 MVTRMVNEKPVVIFSKSECCICFSIQTLICGFG-------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQR   73 (106)
Q Consensus         3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~-------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~   73 (106)
                      .++++++...++.|+.+|||+|.+....+++..       +.+-.+|.+..+.      ...+++ ..++|++++  +|+
T Consensus        10 ~f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~------~~~~~~-i~~~Pt~~~~~~g~   82 (101)
T cd02994          10 NWTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG------LSGRFF-VTALPTIYHAKDGV   82 (101)
T ss_pred             hHHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh------HHHHcC-CcccCEEEEeCCCC
Confidence            345666666788899999999999988886542       3334455544322      223334 488898754  554

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.5e-06  Score=56.46  Aligned_cols=59  Identities=22%  Similarity=0.268  Sum_probs=42.1

Q ss_pred             CCCE-EEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEe
Q 042938           10 EKPV-VIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLV   75 (106)
Q Consensus        10 ~~~v-~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~i   75 (106)
                      ..|| +-|+.+||..|+.+...|+++-      +.+-.+|+|.+.+.+.      . .+...+|++  |.||+.+
T Consensus        61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~------~-Y~I~avPtvlvfknGe~~  128 (150)
T KOG0910|consen   61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAE------D-YEISAVPTVLVFKNGEKV  128 (150)
T ss_pred             CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHh------h-cceeeeeEEEEEECCEEe
Confidence            4454 6699999999999999998764      3445677777765443      2 334788886  7799654

>PTZ00051 thioredoxin; Provisional

Probab=98.28  E-value=5.2e-06  Score=49.52  Aligned_cols=68  Identities=13%  Similarity=0.213  Sum_probs=42.9

Q ss_pred             HHHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938            3 MVTRMVNEKP--VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR   73 (106)
Q Consensus         3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~   73 (106)
                      .+.++++.++  ++.|+.+||++|+.+...|.+.     ++.+-.+|++...      ....+++. .++|++  +-+|+
T Consensus        10 ~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~------~~~~~~~v-~~~Pt~~~~~~g~   82 (98)
T PTZ00051         10 EFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELS------EVAEKENI-TSMPTFKVFKNGS   82 (98)
T ss_pred             HHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchH------HHHHHCCC-ceeeEEEEEeCCe
Confidence            4566666655  4569999999999998888664     3444444544321      23444444 788876  45776


Q ss_pred             Eeec
Q 042938           74 LVGG   77 (106)
Q Consensus        74 ~iGg   77 (106)
                      .++.
T Consensus        83 ~~~~   86 (98)
T PTZ00051         83 VVDT   86 (98)
T ss_pred             EEEE
Confidence            5543

>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]

Probab=98.27  E-value=3.7e-06  Score=52.81  Aligned_cols=49  Identities=18%  Similarity=0.437  Sum_probs=41.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG   60 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~   60 (106)
                      .|++|+.|.|.-|++++.+|++.|++|+.+|+... ++.+++.+.++..+
T Consensus         2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g   51 (117)
T COG1393           2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG   51 (117)
T ss_pred             eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence            48999999999999999999999999999998765 55556777666554

>PRK10026 arsenate reductase; Provisional

Probab=98.27  E-value=3.4e-06  Score=54.59  Aligned_cols=50  Identities=16%  Similarity=0.404  Sum_probs=42.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG   60 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~   60 (106)
                      ..|+||+.+.|.-|++++.+|++.|++|+++|+-.+ +..++++..++..+
T Consensus         2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~g   52 (141)
T PRK10026          2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADMG   52 (141)
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhCC
Confidence            468999999999999999999999999999998654 56666777776544

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=98.27  E-value=3.4e-06  Score=50.33  Aligned_cols=68  Identities=24%  Similarity=0.402  Sum_probs=42.1

Q ss_pred             HHhhhhC-C-C-EEEEEcCCCchHHHHHHHHhhc----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeE
Q 042938            4 VTRMVNE-K-P-VVIFSKSECCICFSIQTLICGF----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRL   74 (106)
Q Consensus         4 ~~~~~~~-~-~-v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~   74 (106)
                      +++.+.. . + ++.|+++||++|..++..|.+.    +-.+....||.+.. .   +...+++ ...+|++  |-+|+.
T Consensus         9 f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~---~l~~~~~-v~~~Pt~~~~~~g~~   83 (103)
T PF00085_consen    9 FEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-K---ELCKKYG-VKSVPTIIFFKNGKE   83 (103)
T ss_dssp             HHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-H---HHHHHTT-CSSSSEEEEEETTEE
T ss_pred             HHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-c---hhhhccC-CCCCCEEEEEECCcE
Confidence            4454544 3 3 5678999999999999888554    32444555554433 2   2334445 4889987  567765


Q ss_pred             ee
Q 042938           75 VG   76 (106)
Q Consensus        75 iG   76 (106)
                      +.
T Consensus        84 ~~   85 (103)
T PF00085_consen   84 VK   85 (103)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.25  E-value=3.7e-06  Score=50.45  Aligned_cols=57  Identities=18%  Similarity=0.393  Sum_probs=36.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG   76 (106)
                      +++|+.+||+.|..+.+.+++.    +  +.+..+|++..++      ...+++ ..++|.+  |-+|+.++
T Consensus        17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~------l~~~~~-v~~vPt~~i~~~g~~v~   81 (97)
T cd02949          17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQE------IAEAAG-IMGTPTVQFFKDKELVK   81 (97)
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHH------HHHHCC-CeeccEEEEEECCeEEE
Confidence            5678999999999999888662    2  4445555554332      223334 4788886  45776654

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=4.5e-06  Score=48.20  Aligned_cols=66  Identities=15%  Similarity=0.275  Sum_probs=46.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHH-----------hCCCCCccEEEECC-eEeecchH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQ-----------LGCQPTVPAVFIGQ-RLVGGPNQ   80 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~-----------~~~~~tvP~ifv~g-~~iGg~~~   80 (106)
                      -++|++..||.|..+...|+++++.|++++|..+-  +.+.++|.-           ..+...+|.+..++ +.|=| +|
T Consensus         4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm--~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-~D   80 (85)
T COG4545           4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESM--ANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-DD   80 (85)
T ss_pred             ceeeccccCcchHHHHHHHHHcCCCceeeehhhhh--hhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-ch
Confidence            38999999999999999999999999999987531  112222221           14457899998764 54444 44


Q ss_pred             H
Q 042938           81 V   81 (106)
Q Consensus        81 ~   81 (106)
                      +
T Consensus        81 l   81 (85)
T COG4545          81 L   81 (85)
T ss_pred             h
Confidence            4

>TIGR00014 arsC arsenate reductase (glutaredoxin)

Probab=98.24  E-value=3.7e-06  Score=52.42  Aligned_cols=48  Identities=23%  Similarity=0.422  Sum_probs=39.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG   60 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~   60 (106)
                      |++|+.++|+-|++++.+|++.|++|+.+|+-.. +...++.+.++..+
T Consensus         1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g   49 (114)
T TIGR00014         1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLG   49 (114)
T ss_pred             CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcC
Confidence            5799999999999999999999999999998654 55556776666543

composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.

>PRK10853 putative reductase; Provisional

Probab=98.23  E-value=3.9e-06  Score=52.72  Aligned_cols=48  Identities=10%  Similarity=0.187  Sum_probs=40.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG   60 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~   60 (106)
                      +++|+.++|.-|++++++|++.|++|+.+|+-.. ++.+++.+.+...|
T Consensus         2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g   50 (118)
T PRK10853          2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDELG   50 (118)
T ss_pred             EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHcC
Confidence            7899999999999999999999999999998654 56666777776544

>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase

Probab=98.23  E-value=1.9e-05  Score=45.16  Aligned_cols=71  Identities=7%  Similarity=0.037  Sum_probs=52.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +++|+.+.+|+|.+++-+|...|++|+.+.++...... ..+.+...+...++|.+..+|..+.....+...
T Consensus         1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~-~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Y   71 (76)
T cd03050           1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQ-LTPEFKKINPFGKVPAIVDGDFTLAESVAILRY   71 (76)
T ss_pred             CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCc-CCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence            36899999999999999999999999998887543211 112334456678999999888777666555443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC

>TIGR01616 nitro_assoc nitrogenase-associated protein

Probab=98.23  E-value=4.9e-06  Score=52.85  Aligned_cols=47  Identities=9%  Similarity=0.165  Sum_probs=38.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEccc-CCCchHHHHHHHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQ-IPNGPQIERALQQ   58 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~-~~~~~~~~~~l~~   58 (106)
                      .+++|+.++|.-|++++.+|++.|++|+.+|+-. .++.+++...++.
T Consensus         2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~   49 (126)
T TIGR01616         2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGN   49 (126)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHH
Confidence            4789999999999999999999999999999855 4555556666554

This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=6.9e-06  Score=50.69  Aligned_cols=60  Identities=20%  Similarity=0.386  Sum_probs=40.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCc-----eEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe----Eeecch
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANP-----TVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR----LVGGPN   79 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~-----~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~----~iGg~~   79 (106)
                      |+-|+.+||+.|+.+...+.++..+|     -.+|+|.      +++.....+. .++|++  +.+|+    .+|...
T Consensus        25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde------~~~~~~~~~V-~~~PTf~f~k~g~~~~~~vGa~~   95 (106)
T KOG0907|consen   25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE------LEEVAKEFNV-KAMPTFVFYKGGEEVDEVVGANK   95 (106)
T ss_pred             EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc------CHhHHHhcCc-eEeeEEEEEECCEEEEEEecCCH
Confidence            34489999999999999998875554     4567776      2234444454 788886  56774    445543

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=98.19  E-value=5.4e-06  Score=51.51  Aligned_cols=48  Identities=21%  Similarity=0.455  Sum_probs=39.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG   60 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~   60 (106)
                      |++|+.+.|+-|++++.+|++.+++|+.+|+-.. ++..++.+.++..+
T Consensus         1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~   49 (112)
T cd03034           1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLG   49 (112)
T ss_pred             CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence            5799999999999999999999999999998654 45556666665544

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.18  E-value=1e-05  Score=55.35  Aligned_cols=65  Identities=17%  Similarity=0.335  Sum_probs=41.5

Q ss_pred             hhhhCCCEEEEEc---CCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938            6 RMVNEKPVVIFSK---SECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus         6 ~~~~~~~v~vf~~---~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      .+-....+++|+.   +|||+|+.+..++++..     +++..+++|.+... +   ...+ .+..++|++.+  ||+.+
T Consensus        16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~-~---l~~~-~~V~~~Pt~~~f~~g~~~   90 (215)
T TIGR02187        16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDK-E---EAEK-YGVERVPTTIILEEGKDG   90 (215)
T ss_pred             hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccH-H---HHHH-cCCCccCEEEEEeCCeee
Confidence            3333445788988   99999999999997763     33446677654432 1   2223 33588998754  65444

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=98.16  E-value=1.5e-05  Score=48.31  Aligned_cols=64  Identities=20%  Similarity=0.277  Sum_probs=38.8

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----C---CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----G---ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ   72 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~---v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g   72 (106)
                      +.++++..+  ++.|+.+|||+|+.....|.+.    +   +.+..+|+| .   .+   ...+++ ..++|++  |-+|
T Consensus        10 ~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~---~~---~~~~~~-v~~~Pt~~~~~~g   81 (102)
T cd02948          10 WEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T---ID---TLKRYR-GKCEPTFLFYKNG   81 (102)
T ss_pred             HHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C---HH---HHHHcC-CCcCcEEEEEECC
Confidence            445555444  4669999999999988887553    2   223445555 1   12   233334 4788865  5678


Q ss_pred             eEe
Q 042938           73 RLV   75 (106)
Q Consensus        73 ~~i   75 (106)
                      +.+
T Consensus        82 ~~~   84 (102)
T cd02948          82 ELV   84 (102)
T ss_pred             EEE
Confidence            643

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.16  E-value=1.5e-05  Score=49.87  Aligned_cols=69  Identities=10%  Similarity=0.237  Sum_probs=41.0

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE-EE--CC
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV-FI--GQ   72 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i-fv--~g   72 (106)
                      ++.+...++  ++.|+.+||++|+.....+.+.      +..|..++++.+++...  +.+.. .+ ..+|++ |+  +|
T Consensus        12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~--~~~~~-~g-~~vPt~~f~~~~G   87 (117)
T cd02959          12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKD--EEFSP-DG-GYIPRILFLDPSG   87 (117)
T ss_pred             HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchh--hhccc-CC-CccceEEEECCCC
Confidence            344444444  4558999999999998877663      34577788887543221  22211 11 248886 44  56


Q ss_pred             eEee
Q 042938           73 RLVG   76 (106)
Q Consensus        73 ~~iG   76 (106)
                      +.++
T Consensus        88 k~~~   91 (117)
T cd02959          88 DVHP   91 (117)
T ss_pred             CCch
Confidence            5544

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR01068 thioredoxin thioredoxin

Probab=98.16  E-value=9.9e-06  Score=48.02  Aligned_cols=57  Identities=18%  Similarity=0.346  Sum_probs=36.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+||++|..+...|.+.    +  +.+-.+|.+..+.      ...+++. .++|++++  +|+.+.
T Consensus        18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~------~~~~~~v-~~~P~~~~~~~g~~~~   82 (101)
T TIGR01068        18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD------IAAKYGI-RSIPTLLLFKNGKEVD   82 (101)
T ss_pred             EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH------HHHHcCC-CcCCEEEEEeCCcEee
Confidence            5668999999999988777553    3  3444455544321      3334454 88998755  776543

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=98.16  E-value=1.2e-05  Score=50.24  Aligned_cols=66  Identities=18%  Similarity=0.420  Sum_probs=42.0

Q ss_pred             HHHhhhh---CCCE-EEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccE--EEE
Q 042938            3 MVTRMVN---EKPV-VIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPA--VFI   70 (106)
Q Consensus         3 ~~~~~~~---~~~v-~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~--ifv   70 (106)
                      .+.+.+.   ...| +-|+.+|||.|..+-++|.++.      +.+-.+|+|+.++..+      .++. ...|+  +|-
T Consensus         4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~------~y~I-~amPtfvffk   76 (114)
T cd02986           4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQ------YFDI-SYIPSTIFFF   76 (114)
T ss_pred             HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHH------hcCc-eeCcEEEEEE
Confidence            3445444   2333 3399999999999999997764      3455677776654332      2232 44555  578


Q ss_pred             CCeEe
Q 042938           71 GQRLV   75 (106)
Q Consensus        71 ~g~~i   75 (106)
                      +|+++
T Consensus        77 ngkh~   81 (114)
T cd02986          77 NGQHM   81 (114)
T ss_pred             CCcEE
Confidence            89876

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=98.13  E-value=9.3e-06  Score=50.07  Aligned_cols=57  Identities=18%  Similarity=0.336  Sum_probs=36.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG   76 (106)
                      ++.|+.+|||.|+.....+.+.       ++.+-.+|++..+.      ...+++ ..++|++  |.+|+.++
T Consensus        28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~------l~~~~~-V~~~Pt~~i~~~g~~~~   93 (111)
T cd02963          28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR------LARKLG-AHSVPAIVGIINGQVTF   93 (111)
T ss_pred             EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH------HHHHcC-CccCCEEEEEECCEEEE
Confidence            5669999999999887776443       34445555554322      223334 4889986  47887553

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.12  E-value=3.9e-05  Score=43.60  Aligned_cols=69  Identities=12%  Similarity=0.088  Sum_probs=51.4

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      .+|+.+..|+|.+++-+|...|++|+.++++...... ..+.+.+.+...++|.+..+|..+.....+..
T Consensus         2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~-~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~   70 (73)
T cd03047           2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGL-DTPEFLAMNPNGRVPVLEDGDFVLWESNAILR   70 (73)
T ss_pred             EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccc-cCHHHHhhCCCCCCCEEEECCEEEECHHHHHH
Confidence            6899999999999999999999999998887532211 11233345667899999999887776655543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.

>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=2.8e-05  Score=54.03  Aligned_cols=71  Identities=10%  Similarity=-0.010  Sum_probs=57.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      ..|.+|+.-.|||..|++-.|+.+|++|+++++|-..-.+.   +++....+..||++..||+.|+-.-.+.+.
T Consensus         8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~---ll~~np~hkKVPvL~Hn~k~i~ESliiveY   78 (231)
T KOG0406|consen    8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEW---LLEKNPVHKKVPVLEHNGKPICESLIIVEY   78 (231)
T ss_pred             CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHH---HHHhccccccCCEEEECCceehhhHHHHHH
Confidence            56999999999999999999999999999999887653333   343333678999999999998766555444

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=98.12  E-value=1.6e-05  Score=52.00  Aligned_cols=58  Identities=16%  Similarity=0.319  Sum_probs=37.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCC-----CCCccEE--EECCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGC-----QPTVPAV--FIGQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~-----~~tvP~i--fv~g~~iG   76 (106)
                      ++.|+.+|||.|+.....+.+.       ++.+-.+|+|..++.      .++++.     ..++|++  |.+|+.++
T Consensus        51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~l------a~~~~V~~~~~v~~~PT~ilf~~Gk~v~  122 (152)
T cd02962          51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNV------AEKFRVSTSPLSKQLPTIILFQGGKEVA  122 (152)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHH------HHHcCceecCCcCCCCEEEEEECCEEEE
Confidence            6779999999999998877554       244455666665432      222232     1237875  78897664

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.11  E-value=1.1e-05  Score=49.17  Aligned_cols=63  Identities=10%  Similarity=0.112  Sum_probs=39.6

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhcC------------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE-
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGFG------------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV-   68 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~------------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i-   68 (106)
                      +++.++.++  ++.|+.+||++|.+....+++..            +.+-.+|.|..+      +...+++ ..++|++ 
T Consensus        11 f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~------~l~~~~~-v~~~Ptl~   83 (108)
T cd02996          11 IDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES------DIADRYR-INKYPTLK   83 (108)
T ss_pred             HHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH------HHHHhCC-CCcCCEEE
Confidence            445565555  46799999999999988885431            333445555432      2333444 4889987 


Q ss_pred             -EECCe
Q 042938           69 -FIGQR   73 (106)
Q Consensus        69 -fv~g~   73 (106)
                       |-+|+
T Consensus        84 ~~~~g~   89 (108)
T cd02996          84 LFRNGM   89 (108)
T ss_pred             EEeCCc
Confidence             55665

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PRK10996 thioredoxin 2; Provisional

Probab=98.10  E-value=1.7e-05  Score=50.91  Aligned_cols=68  Identities=10%  Similarity=0.275  Sum_probs=41.0

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEe
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLV   75 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~i   75 (106)
                      ++++++..+  ++.|+.+||++|......|.+.    +-.+..+.+|.+...    +...+++ ..++|++  |-+|+.+
T Consensus        45 ~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~----~l~~~~~-V~~~Ptlii~~~G~~v  119 (139)
T PRK10996         45 LDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER----ELSARFR-IRSIPTIMIFKNGQVV  119 (139)
T ss_pred             HHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH----HHHHhcC-CCccCEEEEEECCEEE
Confidence            455555444  5679999999999988777553    323444444443321    2333444 4788886  4588755


Q ss_pred             e
Q 042938           76 G   76 (106)
Q Consensus        76 G   76 (106)
                      .
T Consensus       120 ~  120 (139)
T PRK10996        120 D  120 (139)
T ss_pred             E
Confidence            3

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=98.10  E-value=1.4e-05  Score=48.12  Aligned_cols=64  Identities=16%  Similarity=0.193  Sum_probs=39.8

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR   73 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~   73 (106)
                      +++.+...+  ++.|+.+||++|+.....+.+..      +.+-.+|++..+.      ...+++ ..++|++  |-+|+
T Consensus        11 f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~------~~~~~~-v~~~Pt~~~~~~g~   83 (101)
T cd03003          11 FDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM------LCRSQG-VNSYPSLYVFPSGM   83 (101)
T ss_pred             HHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH------HHHHcC-CCccCEEEEEcCCC
Confidence            445554444  56699999999999988886542      2334556654332      223334 3788987  55675


Q ss_pred             E
Q 042938           74 L   74 (106)
Q Consensus        74 ~   74 (106)
                      .
T Consensus        84 ~   84 (101)
T cd03003          84 N   84 (101)
T ss_pred             C
Confidence            3

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.08  E-value=2.6e-05  Score=48.74  Aligned_cols=29  Identities=14%  Similarity=0.355  Sum_probs=22.0

Q ss_pred             HHHhhhhCC-C--EEEEEcCCCchHHHHHHHH
Q 042938            3 MVTRMVNEK-P--VVIFSKSECCICFSIQTLI   31 (106)
Q Consensus         3 ~~~~~~~~~-~--v~vf~~~~Cp~C~~~~~~L   31 (106)
                      .+.++.+++ +  ++.|+.+|||+|++....+
T Consensus         5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~   36 (125)
T cd02951           5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDY   36 (125)
T ss_pred             HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHh
Confidence            456667766 3  5668999999999987655

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=98.07  E-value=1.6e-05  Score=53.11  Aligned_cols=78  Identities=17%  Similarity=0.249  Sum_probs=46.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee---cchHHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG---GPNQVM   82 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG---g~~~~~   82 (106)
                      |+-|+.+|||.|+.+...|.++.     +.|-.+|++..    .   ....++ ..++|++  |.+|+.++   |+++..
T Consensus        87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~----~---l~~~f~-v~~vPTlllyk~G~~v~~~vG~~~~~  158 (175)
T cd02987          87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT----G---ASDEFD-TDALPALLVYKGGELIGNFVRVTEDL  158 (175)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch----h---hHHhCC-CCCCCEEEEEECCEEEEEEechHHhc
Confidence            44589999999998888776653     33444555532    2   222334 4788975  67998764   444322


Q ss_pred             -hHHHhCCchHHHHhcC
Q 042938           83 -SLHVQNELGPLLVRAG   98 (106)
Q Consensus        83 -~~~~~g~L~~~L~~~g   98 (106)
                       .-.....|+..|.+.|
T Consensus       159 g~~f~~~~le~~L~~~g  175 (175)
T cd02987         159 GEDFDAEDLESFLVEYG  175 (175)
T ss_pred             CCCCCHHHHHHHHHhcC
Confidence             1223345666665544

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR00862 O-ClC intracellular chloride channel protein

Probab=98.05  E-value=6.6e-05  Score=52.39  Aligned_cols=64  Identities=14%  Similarity=0.108  Sum_probs=51.2

Q ss_pred             CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHH
Q 042938           19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHV   86 (106)
Q Consensus        19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~   86 (106)
                      ..||+|.+++-.|..+|++|+.+.+|.....+    .+.+.+...++|++..+|..+.....+.+...
T Consensus        17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~----~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~   80 (236)
T TIGR00862        17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPE----DLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE   80 (236)
T ss_pred             CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCH----HHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence            55999999999999999999999998764333    33345666899999999998888887766544

These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.

>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.04  E-value=5.9e-05  Score=43.19  Aligned_cols=69  Identities=9%  Similarity=0.197  Sum_probs=49.0

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHhH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMSL   84 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~~   84 (106)
                      .+|+.+.|+ |.+++-+|...|++|+.++++...... ..+.+.+.+...++|.+..+ |..+.....+...
T Consensus         2 ~Ly~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~~~~~-~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~y   71 (77)
T cd03057           2 KLYYSPGAC-SLAPHIALEELGLPFELVRVDLRTKTQ-KGADYLAINPKGQVPALVLDDGEVLTESAAILQY   71 (77)
T ss_pred             EEEeCCCCc-hHHHHHHHHHcCCCceEEEEecccCcc-CCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHH
Confidence            578888764 889999999999999998887643210 11233455777899999887 7777666655554

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.02  E-value=3.9e-05  Score=45.53  Aligned_cols=68  Identities=10%  Similarity=0.166  Sum_probs=41.1

Q ss_pred             HHHhhhhCC--C--EEEEEcCCCchHHHHHHHHhhcC----CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938            3 MVTRMVNEK--P--VVIFSKSECCICFSIQTLICGFG----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ   72 (106)
Q Consensus         3 ~~~~~~~~~--~--v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g   72 (106)
                      .+++++...  +  ++.|+.+||+.|+++...|.+..    ..+..+.+|.+...    +...+++. .++|++  |.+|
T Consensus         4 ~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~----~~~~~~~i-~~~Pt~~~~~~g   78 (97)
T cd02984           4 EFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELP----EISEKFEI-TAVPTFVFFRNG   78 (97)
T ss_pred             HHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCH----HHHHhcCC-ccccEEEEEECC
Confidence            344555444  3  46699999999999988886532    23444455543321    23334453 778875  5677


Q ss_pred             eEe
Q 042938           73 RLV   75 (106)
Q Consensus        73 ~~i   75 (106)
                      +.+
T Consensus        79 ~~~   81 (97)
T cd02984          79 TIV   81 (97)
T ss_pred             EEE
Confidence            654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.02  E-value=2.4e-05  Score=48.73  Aligned_cols=60  Identities=15%  Similarity=0.168  Sum_probs=39.9

Q ss_pred             CEEEEEcCC--CchHHHHHHHHhhcCCC------ceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecc
Q 042938           12 PVVIFSKSE--CCICFSIQTLICGFGAN------PTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGP   78 (106)
Q Consensus        12 ~v~vf~~~~--Cp~C~~~~~~L~~~~v~------~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~   78 (106)
                      .|+.|+.+|  ||.|..+..+|.+..-+      +-.+|+|..+   +   ...+++ ..++|++  |-+|+.++..
T Consensus        30 ~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~---~---la~~f~-V~sIPTli~fkdGk~v~~~   99 (111)
T cd02965          30 LVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ---A---LAARFG-VLRTPALLFFRDGRYVGVL   99 (111)
T ss_pred             EEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH---H---HHHHcC-CCcCCEEEEEECCEEEEEE
Confidence            367788886  99999999999775333      3345555543   2   222334 4888886  6799877654

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs

Probab=97.98  E-value=0.00011  Score=42.01  Aligned_cols=64  Identities=11%  Similarity=0.025  Sum_probs=48.3

Q ss_pred             cCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938           18 KSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus        18 ~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      ...||+|.+++-+|...|++|+.+.++......  .+.+.+.+....+|.+..+|..+.....+..
T Consensus         7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~--~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~   70 (73)
T cd03043           7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDT--RARILEFSPTGKVPVLVDGGIVVWDSLAICE   70 (73)
T ss_pred             CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccc--cHHHHhhCCCCcCCEEEECCEEEEcHHHHHH
Confidence            357999999999999999999998887643211  1234455767899999999988777766554

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=97.97  E-value=1.5e-05  Score=51.67  Aligned_cols=65  Identities=12%  Similarity=0.235  Sum_probs=39.5

Q ss_pred             HHHhhhh--CCC--EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EE
Q 042938            3 MVTRMVN--EKP--VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FI   70 (106)
Q Consensus         3 ~~~~~~~--~~~--v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv   70 (106)
                      .+.+.+.  ..+  |+-|+.+||+.|..+..+|.+..      +.+-.+|||..++..+      .++.....|.+  |-
T Consensus        13 e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~------~y~I~~~~t~~~ffk   86 (142)
T PLN00410         13 AVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNT------MYELYDPCTVMFFFR   86 (142)
T ss_pred             HHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHH------HcCccCCCcEEEEEE
Confidence            4555553  233  34499999999999999987764      2335677776654322      23432244555  44


Q ss_pred             CCe
Q 042938           71 GQR   73 (106)
Q Consensus        71 ~g~   73 (106)
                      +|+
T Consensus        87 ~g~   89 (142)
T PLN00410         87 NKH   89 (142)
T ss_pred             CCe
Confidence            665

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=97.97  E-value=4e-05  Score=46.48  Aligned_cols=53  Identities=17%  Similarity=0.285  Sum_probs=32.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCC---ceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGFGAN---PTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~---~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      ++.|+.+||++|++....|++..-.   ...+.||.+.....   ...+++ ..++|+++
T Consensus        22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~---l~~~~~-V~~~PT~~   77 (100)
T cd02999          22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPS---LLSRYG-VVGFPTIL   77 (100)
T ss_pred             EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHH---HHHhcC-CeecCEEE
Confidence            5669999999999999888665322   23334444312222   223334 47889764

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=97.95  E-value=0.00018  Score=40.78  Aligned_cols=70  Identities=13%  Similarity=0.154  Sum_probs=50.7

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .+|+.+. +.|.+++-+|...|++|+.+.++.......- +.+.+.+...++|.+..+|..+.....+....
T Consensus         2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~-~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL   71 (76)
T cd03046           2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAP-PEYLAINPLGKVPVLVDGDLVLTESAAIILYL   71 (76)
T ss_pred             EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCC-HHHHhcCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            5777775 7799999999999999999888753211111 13334566689999999998888877766643

cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=97.95  E-value=3.8e-05  Score=46.34  Aligned_cols=53  Identities=15%  Similarity=0.210  Sum_probs=33.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938           13 VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ   72 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g   72 (106)
                      ++.|+.+||+.|+++...+.+..      +.+-.+|.+..+      +...+++ ..++|++  |.+|
T Consensus        23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~------~~~~~~~-i~~~Pt~~~~~~g   83 (104)
T cd03004          23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYE------SLCQQAN-IRAYPTIRLYPGN   83 (104)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchH------HHHHHcC-CCcccEEEEEcCC
Confidence            56699999999999888775542      334445555432      2223334 4788886  4565

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PRK15113 glutathione S-transferase; Provisional

Probab=97.94  E-value=0.00014  Score=49.37  Aligned_cols=72  Identities=10%  Similarity=0.082  Sum_probs=52.7

Q ss_pred             CCEEEEEcC--CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938           11 KPVVIFSKS--ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus        11 ~~v~vf~~~--~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      ..+++|+.+  .||+|.+++-+|.+.|++|+.+.++..... .-.+.+.+.+....||++..||..+-...-+..
T Consensus         4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~-~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~   77 (214)
T PRK15113          4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGE-HLQPTYQGYSLTRRVPTLQHDDFELSESSAIAE   77 (214)
T ss_pred             CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCcc-ccCHHHHhcCCCCCCCEEEECCEEEecHHHHHH
Confidence            457899975  699999999999999999999888764221 011233455667899999999877665555444

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=97.93  E-value=3.7e-05  Score=45.91  Aligned_cols=67  Identities=13%  Similarity=0.181  Sum_probs=38.3

Q ss_pred             HHhhhhCCC-EEEEEcCCCchHHHHHHHHhhc----CC---CceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938            4 VTRMVNEKP-VVIFSKSECCICFSIQTLICGF----GA---NPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR   73 (106)
Q Consensus         4 ~~~~~~~~~-v~vf~~~~Cp~C~~~~~~L~~~----~v---~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~   73 (106)
                      +.+.+..++ ++.|+.+||++|+.....+.+.    .-   .+....+|.+... .   ..+.++ ..++|++  |-+|+
T Consensus        10 f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-~---~~~~~~-v~~~Pt~~~~~~g~   84 (102)
T cd03005          10 FDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-E---LCSEFQ-VRGYPTLLLFKDGE   84 (102)
T ss_pred             HHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-h---hHhhcC-CCcCCEEEEEeCCC
Confidence            444554445 4668999999999888777443    11   2334444433322 1   223334 4789985  45665


Q ss_pred             Ee
Q 042938           74 LV   75 (106)
Q Consensus        74 ~i   75 (106)
                      .+
T Consensus        85 ~~   86 (102)
T cd03005          85 KV   86 (102)
T ss_pred             ee
Confidence            43

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=97.92  E-value=8.3e-05  Score=45.00  Aligned_cols=52  Identities=15%  Similarity=0.196  Sum_probs=32.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      ++.|+.+||++|++....+.+.    +  +.+-.+|++.++. .   +...+++ ..++|+++
T Consensus        22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~-~---~~~~~~~-i~~~Pt~~   79 (109)
T cd03002          22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN-K---PLCGKYG-VQGFPTLK   79 (109)
T ss_pred             EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc-H---HHHHHcC-CCcCCEEE
Confidence            6779999999999988777554    2  2333445554322 1   2333444 47899874

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=97.92  E-value=0.00011  Score=43.59  Aligned_cols=58  Identities=19%  Similarity=0.197  Sum_probs=36.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE--ECCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGFG----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF--IGQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if--v~g~~i   75 (106)
                      ++.|+.+||+.|.+....+.+..    -.+....||.+... +   ...+++ ..++|+++  -+|+.+
T Consensus        16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~---l~~~~~-i~~~Pt~~~~~~g~~~   79 (96)
T cd02956          16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-Q---IAQQFG-VQALPTVYLFAAGQPV   79 (96)
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-H---HHHHcC-CCCCCEEEEEeCCEEe
Confidence            56689999999999988886542    22334444443331 1   223334 47899874  677654

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=97.90  E-value=5.1e-05  Score=46.22  Aligned_cols=21  Identities=24%  Similarity=0.512  Sum_probs=15.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHh
Q 042938           12 PVVIFSKSECCICFSIQTLIC   32 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~   32 (106)
                      .+++|+.++||+|+++.+.+.
T Consensus         8 ~v~~F~~~~C~~C~~~~~~~~   28 (112)
T PF13098_consen    8 IVVVFTDPWCPYCKKLEKELF   28 (112)
T ss_dssp             EEEEEE-TT-HHHHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHHH
Confidence            478899999999999876665

...

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=97.89  E-value=4.4e-05  Score=48.07  Aligned_cols=56  Identities=13%  Similarity=0.144  Sum_probs=32.6

Q ss_pred             EEEEEc-------CCCchHHHHHHHHhh----cC--CCceEEEcccCCCchH-HHHHHHHhCCCC-CccEEE
Q 042938           13 VVIFSK-------SECCICFSIQTLICG----FG--ANPTVYELDQIPNGPQ-IERALQQLGCQP-TVPAVF   69 (106)
Q Consensus        13 v~vf~~-------~~Cp~C~~~~~~L~~----~~--v~~~~v~vd~~~~~~~-~~~~l~~~~~~~-tvP~if   69 (106)
                      ++.|+.       +|||.|+.+...|++    ..  +.+-.+|++..+.-.. ..+....+.. . ++|++.
T Consensus        25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~   95 (119)
T cd02952          25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLL   95 (119)
T ss_pred             EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEE
Confidence            556888       899999988776644    33  4556667766431000 0122223333 5 889874

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PLN02473 glutathione S-transferase

Probab=97.89  E-value=0.00014  Score=49.20  Aligned_cols=69  Identities=13%  Similarity=0.026  Sum_probs=53.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC--CchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIP--NGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~--~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +.+|+.+.+|+|.+++-+|.++|++|+.+.++...  ....  +++. .+...++|++..||..|....-+...
T Consensus         3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~--~~~~-~nP~g~vP~L~~~g~~l~ES~aI~~Y   73 (214)
T PLN02473          3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKP--EHLL-RQPFGQVPAIEDGDLKLFESRAIARY   73 (214)
T ss_pred             eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCH--HHHh-hCCCCCCCeEEECCEEEEehHHHHHH
Confidence            57899999999999999999999999988776542  2222  3443 46668999999999888777766553

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=97.87  E-value=8.1e-05  Score=45.58  Aligned_cols=52  Identities=10%  Similarity=0.221  Sum_probs=31.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC-------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGFG-------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~-------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      ++.|+.+|||+|++....+.+..       +.+-.+|+|.  +...   ...+..+...+|+++
T Consensus        25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~--~~~~---~~~~~~~v~~~Pti~   83 (109)
T cd02993          25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG--EQRE---FAKEELQLKSFPTIL   83 (109)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc--cchh---hHHhhcCCCcCCEEE
Confidence            57799999999999988886542       3333444444  2122   222223457899873

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=97.86  E-value=8.1e-05  Score=50.43  Aligned_cols=76  Identities=17%  Similarity=0.222  Sum_probs=45.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee---cchHHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG---GPNQVM   82 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG---g~~~~~   82 (106)
                      |+-|+.+||+.|..+...|.++.     +.|-.++++..         ...++ ..++|++  |.||+.++   |+.++-
T Consensus       106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---------~~~~~-i~~lPTlliyk~G~~v~~ivG~~~~g  175 (192)
T cd02988         106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---------IPNYP-DKNLPTILVYRNGDIVKQFIGLLEFG  175 (192)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---------HhhCC-CCCCCEEEEEECCEEEEEEeCchhhC
Confidence            34499999999999988887653     33444555421         12233 4788886  67887553   343331


Q ss_pred             h-HHHhCCchHHHHhcC
Q 042938           83 S-LHVQNELGPLLVRAG   98 (106)
Q Consensus        83 ~-~~~~g~L~~~L~~~g   98 (106)
                      . -.....|+..|.+.|
T Consensus       176 g~~~~~~~lE~~L~~~g  192 (192)
T cd02988         176 GMNTTMEDLEWLLVQVG  192 (192)
T ss_pred             CCCCCHHHHHHHHHhcC
Confidence            1 112345666666554

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=97.86  E-value=4.3e-05  Score=46.29  Aligned_cols=30  Identities=17%  Similarity=0.242  Sum_probs=20.7

Q ss_pred             HHhhhhCCC-EEEEEcCCCchHHHHHHHHhh
Q 042938            4 VTRMVNEKP-VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus         4 ~~~~~~~~~-v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      +.+..+... ++.|+.+|||+|++....|++
T Consensus         9 ~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~   39 (104)
T cd03000           9 FKDVRKEDIWLVDFYAPWCGHCKKLEPVWNE   39 (104)
T ss_pred             hhhhccCCeEEEEEECCCCHHHHhhChHHHH
Confidence            334444334 456899999999988877754

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=97.83  E-value=0.00016  Score=46.55  Aligned_cols=67  Identities=12%  Similarity=0.202  Sum_probs=40.8

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-E--CC
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-I--GQ   72 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v--~g   72 (106)
                      +++.+...+  ++.|+.+||++|......|.++    +  +.+..+++|....    .+.+.+++ ...+|+++ +  +|
T Consensus        13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~----~~~~~~~~-V~~iPt~v~~~~~G   87 (142)
T cd02950          13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW----LPEIDRYR-VDGIPHFVFLDREG   87 (142)
T ss_pred             HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc----HHHHHHcC-CCCCCEEEEECCCC
Confidence            344555544  4569999999999998887654    2  3455566664321    12334445 47899864 4  46


Q ss_pred             eEe
Q 042938           73 RLV   75 (106)
Q Consensus        73 ~~i   75 (106)
                      +.+
T Consensus        88 ~~v   90 (142)
T cd02950          88 NEE   90 (142)
T ss_pred             CEE
Confidence            544

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.82  E-value=9.2e-05  Score=50.98  Aligned_cols=67  Identities=21%  Similarity=0.412  Sum_probs=45.8

Q ss_pred             HHHhhhhCCCEEEEEcCCCchHHHHHHHH----hhcCCCceEEEcccCC-----CchHHHHHHHHhCCCCCccEEEE
Q 042938            3 MVTRMVNEKPVVIFSKSECCICFSIQTLI----CGFGANPTVYELDQIP-----NGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus         3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~vd~~~-----~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      .++++.....+++|+++.||+|+....+|    +++|++...+++|...     +...-....+.++. .++|.+|+
T Consensus       114 ~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v-~~~Pal~L  189 (215)
T PF13728_consen  114 ALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV-KVTPALFL  189 (215)
T ss_pred             HHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC-CcCCEEEE
Confidence            45666677789999999999999887777    5568888888888531     11000122333454 79999975

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=97.80  E-value=0.00011  Score=46.23  Aligned_cols=66  Identities=8%  Similarity=0.124  Sum_probs=38.8

Q ss_pred             HHhhhhCC--CEEE-EEcCCCch--HH--HHH--------HHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE
Q 042938            4 VTRMVNEK--PVVI-FSKSECCI--CF--SIQ--------TLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV   68 (106)
Q Consensus         4 ~~~~~~~~--~v~v-f~~~~Cp~--C~--~~~--------~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i   68 (106)
                      +.+.+..+  .+++ |+.+||+.  |+  ...        +.|...++.+-.+|+|.+++      ..++++ ..++|++
T Consensus        19 F~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~------La~~~~-I~~iPTl   91 (120)
T cd03065          19 YKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK------VAKKLG-LDEEDSI   91 (120)
T ss_pred             HHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH------HHHHcC-CccccEE
Confidence            34445444  3444 56666755  98  333        33344567777788887643      222334 4888886


Q ss_pred             --EECCeEee
Q 042938           69 --FIGQRLVG   76 (106)
Q Consensus        69 --fv~g~~iG   76 (106)
                        |.||+.+.
T Consensus        92 ~lfk~G~~v~  101 (120)
T cd03065          92 YVFKDDEVIE  101 (120)
T ss_pred             EEEECCEEEE
Confidence              78998664

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=97.77  E-value=0.0001  Score=44.01  Aligned_cols=54  Identities=13%  Similarity=0.225  Sum_probs=33.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++.|+.+|||+|.+..+.+.+.    .  -.+....+|.+.....   ...+++. .++|.+++
T Consensus        22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~i-~~~P~~~~   81 (105)
T cd02998          22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD---LAKKYGV-SGFPTLKF   81 (105)
T ss_pred             EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh---hHHhCCC-CCcCEEEE
Confidence            6779999999999888777543    2  2344555554441122   3333444 88998753

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=97.76  E-value=6.8e-05  Score=46.69  Aligned_cols=60  Identities=5%  Similarity=-0.074  Sum_probs=36.9

Q ss_pred             hhCCC--EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938            8 VNEKP--VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR   73 (106)
Q Consensus         8 ~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~   73 (106)
                      ++.++  ++.|+.+||++|+.+...+++..      +.+-.+|+|.+++      ......+..++|++  |.+|+
T Consensus        26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~------l~~~~~~I~~~PTl~lf~~g~   95 (113)
T cd03006          26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQG------KCRKQKHFFYFPVIHLYYRSR   95 (113)
T ss_pred             ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChH------HHHHhcCCcccCEEEEEECCc
Confidence            34444  56699999999999998887653      2334455554432      22111233677875  67775

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PLN02378 glutathione S-transferase DHAR1

Probab=97.76  E-value=0.00025  Score=48.29  Aligned_cols=62  Identities=10%  Similarity=0.109  Sum_probs=47.5

Q ss_pred             CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      ..||+|.+++-+|.++|++|+.+.||......   ++ .+.+...+||++..||..+....-+...
T Consensus        18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~---~~-l~inP~G~VPvL~~~~~~l~ES~aI~~Y   79 (213)
T PLN02378         18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKPQ---WF-LDISPQGKVPVLKIDDKWVTDSDVIVGI   79 (213)
T ss_pred             CCCcchHHHHHHHHHcCCCCeEEEeCcccCCH---HH-HHhCCCCCCCEEEECCEEecCHHHHHHH
Confidence            45999999999999999999998887653322   23 3456668999999999877766655553

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.76  E-value=8.4e-05  Score=44.42  Aligned_cols=50  Identities=18%  Similarity=0.181  Sum_probs=31.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      ++.|+.+||++|++....+.+..      +.+-.+|.+..+      +..++++. .++|+++
T Consensus        22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~------~~~~~~~i-~~~P~~~   77 (103)
T cd03001          22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQ------SLAQQYGV-RGFPTIK   77 (103)
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchH------HHHHHCCC-CccCEEE
Confidence            66789999999999988775532      233344444322      23334444 7899873

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.76  E-value=8e-05  Score=44.54  Aligned_cols=68  Identities=12%  Similarity=0.230  Sum_probs=37.6

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCC-chHHHHHHHHhCCCCCccEE--EECC
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPN-GPQIERALQQLGCQPTVPAV--FIGQ   72 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~-~~~~~~~l~~~~~~~tvP~i--fv~g   72 (106)
                      +.++++..+  ++.|+.+|||+|++....+.+.    .  -.+....+|.+.+ ...   ...+++ ..++|++  |-+|
T Consensus        10 ~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~-i~~~Pt~~~~~~g   85 (104)
T cd02997          10 FRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA---LKEEYN-VKGFPTFKYFENG   85 (104)
T ss_pred             HHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH---HHHhCC-CccccEEEEEeCC
Confidence            344444443  5779999999999887666443    2  2233333343332 122   333334 4788886  4566


Q ss_pred             eEe
Q 042938           73 RLV   75 (106)
Q Consensus        73 ~~i   75 (106)
                      +.+
T Consensus        86 ~~~   88 (104)
T cd02997          86 KFV   88 (104)
T ss_pred             Cee
Confidence            543

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.76  E-value=7.6e-05  Score=43.75  Aligned_cols=61  Identities=16%  Similarity=0.237  Sum_probs=36.9

Q ss_pred             HHhhhhCC--CEEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938            4 VTRMVNEK--PVVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus         4 ~~~~~~~~--~v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      +.+++...  -+++|++++|++|..+...+.+.      +-.+....++.+.. .   ....+++ .+.+|+++
T Consensus         8 ~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~---~~~~~~~-i~~~Pt~~   76 (101)
T cd02961           8 FDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-N---DLCSEYG-VRGYPTIK   76 (101)
T ss_pred             HHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-H---HHHHhCC-CCCCCEEE
Confidence            44555555  36779999999999988877553      22344444443331 1   2333334 48899874

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>TIGR01262 maiA maleylacetoacetate isomerase

Probab=97.75  E-value=0.00013  Score=49.12  Aligned_cols=71  Identities=13%  Similarity=0.181  Sum_probs=52.1

Q ss_pred             EEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           15 IFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        15 vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +|+.+.||+|.+++-+|..+|++|+.+.++.........+.+...+...++|++..||..+.....+....
T Consensus         2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl   72 (210)
T TIGR01262         2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYL   72 (210)
T ss_pred             cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHH
Confidence            68888999999999999999999999888742210111123445566789999999998887777665533

Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=97.74  E-value=6e-05  Score=44.79  Aligned_cols=59  Identities=12%  Similarity=0.140  Sum_probs=34.9

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhcC--------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGFG--------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~--------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      +++.+...+  ++.|+.+||+.|++....+.+..        +.+..+|.+..+      +...+++ ...+|.++
T Consensus         6 ~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~-i~~~P~~~   74 (102)
T TIGR01126         6 FDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK------DLASRFG-VSGFPTIK   74 (102)
T ss_pred             HHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH------HHHHhCC-CCcCCEEE
Confidence            344444443  67799999999998877775532        223333443321      2333334 48899873

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.73  E-value=0.00021  Score=49.66  Aligned_cols=23  Identities=13%  Similarity=0.566  Sum_probs=20.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhc
Q 042938           12 PVVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      .|++|+-+.||||+++...+.++
T Consensus       110 ~I~vFtDp~CpyCkkl~~~l~~~  132 (232)
T PRK10877        110 VITVFTDITCGYCHKLHEQMKDY  132 (232)
T ss_pred             EEEEEECCCChHHHHHHHHHHHH
Confidence            48899999999999998888775

>TIGR02740 TraF-like TraF-like protein

Probab=97.72  E-value=0.00018  Score=51.19  Aligned_cols=66  Identities=26%  Similarity=0.397  Sum_probs=40.1

Q ss_pred             HHhhhhCCCEEEEEcCCCchHHHHHHHHhh----cCCCceEEEcccCCCc-----hHHHHHHHHhCCCCCccEEEE
Q 042938            4 VTRMVNEKPVVIFSKSECCICFSIQTLICG----FGANPTVYELDQIPNG-----PQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus         4 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~vd~~~~~-----~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++++....-++.|+.+|||+|+.....|.+    +++.+..+++|..+..     ..-......++ ..++|++|+
T Consensus       161 l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g-V~~vPtl~L  235 (271)
T TIGR02740       161 MKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLK-IRTVPAVFL  235 (271)
T ss_pred             HHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcC-CCcCCeEEE
Confidence            334444445777999999999988877754    4666666777764311     00011223334 488999853

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=97.72  E-value=0.00021  Score=48.09  Aligned_cols=35  Identities=26%  Similarity=0.547  Sum_probs=26.3

Q ss_pred             CEEEEEcCCCchHHHHHHHH----hhcCCCceEEEcccC
Q 042938           12 PVVIFSKSECCICFSIQTLI----CGFGANPTVYELDQI   46 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~vd~~   46 (106)
                      ++++|+.+|||+|++....|    +++++.+.-+.+|..
T Consensus        72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~  110 (181)
T PRK13728         72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ  110 (181)
T ss_pred             eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence            48999999999999875444    556776666777654

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=97.70  E-value=0.00048  Score=43.59  Aligned_cols=76  Identities=16%  Similarity=0.196  Sum_probs=42.0

Q ss_pred             HHHhhhhCCC-E-EEEEcCCCchHHHHHH-HHhh------cCCCceEEEcccC--CCchH-HHHHHHHhCCCCCccEEE-
Q 042938            3 MVTRMVNEKP-V-VIFSKSECCICFSIQT-LICG------FGANPTVYELDQI--PNGPQ-IERALQQLGCQPTVPAVF-   69 (106)
Q Consensus         3 ~~~~~~~~~~-v-~vf~~~~Cp~C~~~~~-~L~~------~~v~~~~v~vd~~--~~~~~-~~~~l~~~~~~~tvP~if-   69 (106)
                      .++++.++++ | +.|+.+||++|++..+ .+..      ++-.|..+.+|.+  ++... ..+.+....+...+|+++ 
T Consensus         7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vf   86 (124)
T cd02955           7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVF   86 (124)
T ss_pred             HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            3455666555 4 4488999999998854 3332      3445665555543  33222 222222233457788864 


Q ss_pred             E--CCeEeecc
Q 042938           70 I--GQRLVGGP   78 (106)
Q Consensus        70 v--~g~~iGg~   78 (106)
                      +  +|+.+-++
T Consensus        87 l~~~G~~~~~~   97 (124)
T cd02955          87 LTPDLKPFFGG   97 (124)
T ss_pred             ECCCCCEEeee
Confidence            4  57777433

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []

Probab=97.66  E-value=0.00013  Score=44.97  Aligned_cols=45  Identities=13%  Similarity=0.315  Sum_probs=33.2

Q ss_pred             EEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938           16 FSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG   60 (106)
Q Consensus        16 f~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~   60 (106)
                      |+.+.|.-|++++++|++.|++|+.+|+... .+..++.+.+...+
T Consensus         1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~   46 (110)
T PF03960_consen    1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG   46 (110)
T ss_dssp             EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred             CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence            7899999999999999999999999998775 44455777776665

This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....

>PLN02817 glutathione dehydrogenase (ascorbate)

Probab=97.65  E-value=0.00046  Score=48.90  Aligned_cols=62  Identities=11%  Similarity=0.150  Sum_probs=47.7

Q ss_pred             CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      -.||+|.+++-+|.++|++|+.+.|+......+   + ...+...++|++..+|..+.....+...
T Consensus        71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~---f-l~iNP~GkVPvL~~d~~~L~ES~aI~~Y  132 (265)
T PLN02817         71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEW---F-LKISPEGKVPVVKLDEKWVADSDVITQA  132 (265)
T ss_pred             CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHH---H-HhhCCCCCCCEEEECCEEEecHHHHHHH
Confidence            459999999999999999999988876543222   3 3456668999999999877766665553

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=97.61  E-value=1e-05  Score=51.60  Aligned_cols=63  Identities=8%  Similarity=0.212  Sum_probs=33.5

Q ss_pred             HHhhhhCCCEEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938            4 VTRMVNEKPVVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus         4 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++.+.+.-.+++++.+|||.|.+....|.+.     ++++.++..|.+++.  +..++.  ++.+++|++++
T Consensus        36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el--~~~~lt--~g~~~IP~~I~  103 (129)
T PF14595_consen   36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKEL--MDQYLT--NGGRSIPTFIF  103 (129)
T ss_dssp             HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHH--TTTTTT---SS--SSEEEE
T ss_pred             HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhH--HHHHHh--CCCeecCEEEE
Confidence            3444445579999999999999887777543     566666665554321  112332  45589999754

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=97.57  E-value=0.00039  Score=43.07  Aligned_cols=63  Identities=14%  Similarity=0.148  Sum_probs=35.2

Q ss_pred             HHhhhhCC--C-EEEEEcCCCchHHHHHHHHhhcCCC-------ceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938            4 VTRMVNEK--P-VVIFSKSECCICFSIQTLICGFGAN-------PTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus         4 ~~~~~~~~--~-v~vf~~~~Cp~C~~~~~~L~~~~v~-------~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      +++.+..+  + ++.|+.+|||.|......+.+..-.       +....+|-..+.  ..+..++++. ..+|+++
T Consensus        11 f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i-~~~Pt~~   83 (114)
T cd02992          11 FNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGV-TGYPTLR   83 (114)
T ss_pred             HHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCC-CCCCEEE
Confidence            44555443  2 5668999999999988887654321       222333322111  1123344454 7889874

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues

Probab=97.51  E-value=0.0011  Score=39.48  Aligned_cols=72  Identities=15%  Similarity=0.286  Sum_probs=40.4

Q ss_pred             EEEEcCC-CchHH------HHHHHHhh--------cCCCceEEEcccCCCchHHHHHHHHh-CCCCCccEEEECCeEee-
Q 042938           14 VIFSKSE-CCICF------SIQTLICG--------FGANPTVYELDQIPNGPQIERALQQL-GCQPTVPAVFIGQRLVG-   76 (106)
Q Consensus        14 ~vf~~~~-Cp~C~------~~~~~L~~--------~~v~~~~v~vd~~~~~~~~~~~l~~~-~~~~tvP~ifv~g~~iG-   76 (106)
                      +||+..- |+.|.      ..-.+|+.        ..+.++++||...++...-+++..+. .-..-.|.|.++|+.|| 
T Consensus         1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E   80 (93)
T PF07315_consen    1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE   80 (93)
T ss_dssp             EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred             CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence            4677754 87775      44455533        24567889998877765444555554 33356799999999998 


Q ss_pred             cchHHHhHH
Q 042938           77 GPNQVMSLH   85 (106)
Q Consensus        77 g~~~~~~~~   85 (106)
                      |+-.++..+
T Consensus        81 Gnp~LK~I~   89 (93)
T PF07315_consen   81 GNPQLKDIY   89 (93)
T ss_dssp             SS--HHHHH
T ss_pred             CCccHHHHH
Confidence            555555443

A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.

>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00025  Score=47.64  Aligned_cols=67  Identities=12%  Similarity=0.107  Sum_probs=50.5

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-ECCeEeecchHHHhHH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IGQRLVGGPNQVMSLH   85 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~~~~~~~~   85 (106)
                      -+|.-+.||||.+++-++--+|++++..-++.+++...++     +-|+..||.+. -+|++++..=|+....
T Consensus         2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~r-----miG~KqVPiL~Kedg~~m~ESlDIV~y~   69 (215)
T COG2999           2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIR-----MIGQKQVPILQKEDGRAMPESLDIVHYV   69 (215)
T ss_pred             ceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhh-----hhcccccceEEccccccchhhhHHHHHH
Confidence            3688899999999999999999999877666655543322     23458999987 5688888777766644

>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.0006  Score=46.07  Aligned_cols=69  Identities=10%  Similarity=0.110  Sum_probs=52.5

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC-CchHHHHHHHHhCCCCCccEEEECCe-EeecchHHHhHH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIP-NGPQIERALQQLGCQPTVPAVFIGQR-LVGGPNQVMSLH   85 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~-~~~~~~~~l~~~~~~~tvP~ifv~g~-~iGg~~~~~~~~   85 (106)
                      ++|+.+.+|+|.+++-.|.++|++|+.+.|+... ...   +.+...+....||++..+|- .+-...-+....
T Consensus         2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~---~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL   72 (211)
T COG0625           2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKP---PDFLALNPLGKVPALVDDDGEVLTESGAILEYL   72 (211)
T ss_pred             eeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCC---HHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHH
Confidence            6788888999999999999999999999888875 222   24445576789999998874 566555554443

>PTZ00062 glutaredoxin; Provisional

Probab=97.49  E-value=0.00053  Score=46.94  Aligned_cols=63  Identities=6%  Similarity=0.061  Sum_probs=40.9

Q ss_pred             HHHhhhh--CCC-EEEEEcCCCchHHHHHHHHhhcCCC---ceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeE
Q 042938            3 MVTRMVN--EKP-VVIFSKSECCICFSIQTLICGFGAN---PTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRL   74 (106)
Q Consensus         3 ~~~~~~~--~~~-v~vf~~~~Cp~C~~~~~~L~~~~v~---~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~   74 (106)
                      .+.++++  ... |+.|+.+|||.|+.+...|.++--+   +..+.|+.+            ++ ...+|.+  |-||+.
T Consensus         8 e~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~~-V~~vPtfv~~~~g~~   74 (204)
T PTZ00062          8 EKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA------------DA-NNEYGVFEFYQNSQL   74 (204)
T ss_pred             HHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc------------cC-cccceEEEEEECCEE
Confidence            4556666  344 5556799999999999998776432   444555543            12 3667764  578877


Q ss_pred             eecc
Q 042938           75 VGGP   78 (106)
Q Consensus        75 iGg~   78 (106)
                      |+.+
T Consensus        75 i~r~   78 (204)
T PTZ00062         75 INSL   78 (204)
T ss_pred             Eeee
Confidence            7644

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=97.47  E-value=0.00034  Score=48.52  Aligned_cols=58  Identities=16%  Similarity=0.228  Sum_probs=35.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCC----CceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGFGA----NPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v----~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~i   75 (106)
                      ++.|+.+|||+|++....+++..-    ......+|.+.. .   +...+++ ..++|++  |.+|+.+
T Consensus        56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-~---~l~~~~~-I~~~PTl~~f~~G~~v  119 (224)
T PTZ00443         56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-L---NLAKRFA-IKGYPTLLLFDKGKMY  119 (224)
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-H---HHHHHcC-CCcCCEEEEEECCEEE
Confidence            677999999999999988866421    222333333322 1   2333334 4788876  5688755

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=97.47  E-value=0.00074  Score=44.19  Aligned_cols=38  Identities=24%  Similarity=0.509  Sum_probs=28.2

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhh----cCCCceEEEcccC
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICG----FGANPTVYELDQI   46 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~vd~~   46 (106)
                      ....++.|+.+|||+|++....|.+    +++.+..+++|..
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~   91 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ   91 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence            3446889999999999988877754    4555556677653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=97.46  E-value=0.00065  Score=47.82  Aligned_cols=67  Identities=16%  Similarity=0.258  Sum_probs=45.6

Q ss_pred             HHHhhhhCCCEEEEEcCCCchHHHHHHHH----hhcCCCceEEEcccCC--CchH---HHHHHHHhCCCCCccEEEE
Q 042938            3 MVTRMVNEKPVVIFSKSECCICFSIQTLI----CGFGANPTVYELDQIP--NGPQ---IERALQQLGCQPTVPAVFI   70 (106)
Q Consensus         3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~vd~~~--~~~~---~~~~l~~~~~~~tvP~ifv   70 (106)
                      .++++.+...+++|.++.||||++...+|    +++|++..-+.+|...  ....   -.....+.+. ..+|.+|+
T Consensus       137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v-~~~PAl~L  212 (248)
T PRK13703        137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV-KYFPALML  212 (248)
T ss_pred             HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCC-cccceEEE
Confidence            46677788899999999999999887777    5568888778887632  2111   0011123344 78999885

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=97.45  E-value=0.00081  Score=47.55  Aligned_cols=67  Identities=16%  Similarity=0.268  Sum_probs=46.6

Q ss_pred             HHHhhhhCCCEEEEEcCCCchHHHHHHHH----hhcCCCceEEEcccCCC--chH---HHHHHHHhCCCCCccEEEE
Q 042938            3 MVTRMVNEKPVVIFSKSECCICFSIQTLI----CGFGANPTVYELDQIPN--GPQ---IERALQQLGCQPTVPAVFI   70 (106)
Q Consensus         3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~vd~~~~--~~~---~~~~l~~~~~~~tvP~ifv   70 (106)
                      .++++.+...+++|.++.||+|++...+|    +++|++...+.+|....  ...   -....++++ ...+|.+|+
T Consensus       144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~-v~~~Pal~L  219 (256)
T TIGR02739       144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLG-VKYFPALYL  219 (256)
T ss_pred             HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcC-CccCceEEE
Confidence            46677778889999999999999887777    56788888888886522  111   001122334 478999875

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=97.44  E-value=0.00039  Score=40.45  Aligned_cols=61  Identities=16%  Similarity=0.313  Sum_probs=36.5

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICG-------FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      +.++-++++  ++.|+.+||++|+...+.+-+       ..-.|..+.+|.+......  .+..    ..+|.+++
T Consensus        10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~----~~~P~~~~   79 (82)
T PF13899_consen   10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDR----QGYPTFFF   79 (82)
T ss_dssp             HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHH----CSSSEEEE
T ss_pred             HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCC----ccCCEEEE
Confidence            334444444  466899999999988766622       3445777777765443332  1222    33888864

...

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.44  E-value=0.0011  Score=44.54  Aligned_cols=23  Identities=17%  Similarity=0.504  Sum_probs=20.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhh
Q 042938           11 KPVVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ..|++|+-+.||||+++.+.+.+
T Consensus        79 ~~i~~f~D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          79 RVVYVFTDPDCPYCRKLEKELKP  101 (197)
T ss_pred             EEEEEEECCCCccHHHHHHHHhh
Confidence            45889999999999999988874

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=97.43  E-value=0.00026  Score=42.16  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=18.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+||++|+.....+.+.
T Consensus        22 ~v~f~~~~C~~C~~~~~~~~~~   43 (104)
T cd02995          22 LVEFYAPWCGHCKALAPIYEEL   43 (104)
T ss_pred             EEEEECCCCHHHHHHhhHHHHH
Confidence            5669999999999988877554

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PRK10357 putative glutathione S-transferase; Provisional

Probab=97.41  E-value=0.0011  Score=44.44  Aligned_cols=66  Identities=11%  Similarity=-0.024  Sum_probs=49.2

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHh
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMS   83 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~   83 (106)
                      .+|+.+.||++.+++-+|...|++|+.++++......+    +...+...++|++.. +|..+-....+..
T Consensus         2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~----~~~~nP~g~vP~L~~~~g~~l~eS~aI~~   68 (202)
T PRK10357          2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNG----VAQYNPLGKVPALVTEEGECWFDSPIIAE   68 (202)
T ss_pred             eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchh----hhhcCCccCCCeEEeCCCCeeecHHHHHH
Confidence            68999999999999999999999999988876433222    223466689999984 6666655555443

>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.38  E-value=0.0016  Score=37.68  Aligned_cols=69  Identities=13%  Similarity=0.028  Sum_probs=47.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      .++|+.+..+.|.+++-+|...|++|+.+.++..++..+....  ......++|++.+||..+....-+..
T Consensus         2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~--~~~~~g~vP~L~~~g~~l~ES~AI~~   70 (79)
T cd03077           2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLEKLKKD--GSLMFQQVPMVEIDGMKLVQTRAILN   70 (79)
T ss_pred             CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHHhhccc--cCCCCCCCCEEEECCEEEeeHHHHHH
Confidence            4688889999999999999999999998888752210110000  01124689999999987776655544

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the

>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria

Probab=97.26  E-value=0.00059  Score=46.66  Aligned_cols=67  Identities=22%  Similarity=0.383  Sum_probs=34.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCC--c--eEEEcc-----------cCCCchHHHHHHHHh-C-CCCCccEEEECC-eE
Q 042938           13 VVIFSKSECCICFSIQTLICGFGAN--P--TVYELD-----------QIPNGPQIERALQQL-G-CQPTVPAVFIGQ-RL   74 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~--~--~~v~vd-----------~~~~~~~~~~~l~~~-~-~~~tvP~ifv~g-~~   74 (106)
                      |.+||+.+|+.|.-+-++|.++.-.  .  -.+.||           ..+...+=|....+. + .....|+++||| ++
T Consensus         2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~   81 (202)
T PF06764_consen    2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH   81 (202)
T ss_dssp             EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred             eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence            6799999999999999888775321  1  111222           222222222333333 2 345789999999 46


Q ss_pred             eecch
Q 042938           75 VGGPN   79 (106)
Q Consensus        75 iGg~~   79 (106)
                      .+|++
T Consensus        82 ~~g~~   86 (202)
T PF06764_consen   82 RVGSD   86 (202)
T ss_dssp             EETT-
T ss_pred             eeccC
Confidence            67776

The function of this family is unknown.; PDB: 2AXO_A.

>PLN02395 glutathione S-transferase

Probab=97.26  E-value=0.0029  Score=42.71  Aligned_cols=69  Identities=10%  Similarity=0.049  Sum_probs=51.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC--chHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN--GPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~--~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +++|+.+.| .+.+++-+|.++|++|+.+.++....  ..+   .+.+.+...+||++..+|..+.....+....
T Consensus         3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~---~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL   73 (215)
T PLN02395          3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQP---EYLALQPFGVVPVIVDGDYKIFESRAIMRYY   73 (215)
T ss_pred             EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCH---HHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            688987775 48999999999999999988876422  122   3344576789999999988777777665543

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=97.24  E-value=0.0017  Score=37.62  Aligned_cols=34  Identities=15%  Similarity=0.328  Sum_probs=24.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccC
Q 042938           13 VVIFSKSECCICFSIQTLICGF------GANPTVYELDQI   46 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~   46 (106)
                      |.+|+.+.||+|..+.+.+.+.      ++.+..+.+...
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~   40 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLL   40 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccC
Confidence            5789999999999998888764      344555544433

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=97.22  E-value=0.0028  Score=37.35  Aligned_cols=47  Identities=11%  Similarity=0.094  Sum_probs=32.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhh----cC--CCceEEEcccCCCchHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICG----FG--ANPTVYELDQIPNGPQIERALQQL   59 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~----~~--v~~~~v~vd~~~~~~~~~~~l~~~   59 (106)
                      ++.|+.+|||.|.+..+.|.+    ++  -.++.+-|..+++..+.++.++..
T Consensus         5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~   57 (95)
T PF13905_consen    5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN   57 (95)
T ss_dssp             EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence            567999999999988777744    34  566666666666666677777655

...

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=97.21  E-value=0.0017  Score=43.46  Aligned_cols=32  Identities=9%  Similarity=0.151  Sum_probs=22.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc---CCCceEEEcc
Q 042938           13 VVIFSKSECCICFSIQTLICGF---GANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~---~v~~~~v~vd   44 (106)
                      ++.|+.+|||+|++....|.++   ++.+--++++
T Consensus        72 vv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~  106 (185)
T PRK15412         72 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYK  106 (185)
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence            5669999999999887777554   4444444443

>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.20  E-value=0.0014  Score=39.43  Aligned_cols=76  Identities=13%  Similarity=0.248  Sum_probs=49.5

Q ss_pred             hCCCEEEEEcCC-CchHH------HHHHHHhhc--------CCCceEEEcccCCCchHHHHHHHHh-CCCCCccEEEECC
Q 042938            9 NEKPVVIFSKSE-CCICF------SIQTLICGF--------GANPTVYELDQIPNGPQIERALQQL-GCQPTVPAVFIGQ   72 (106)
Q Consensus         9 ~~~~v~vf~~~~-Cp~C~------~~~~~L~~~--------~v~~~~v~vd~~~~~~~~~~~l~~~-~~~~tvP~ifv~g   72 (106)
                      +..++++|+... |..|.      ..-.+|+..        +..|+++||...+.....+++..+. ....-.|.|.++|
T Consensus         3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivved   82 (106)
T COG4837           3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVED   82 (106)
T ss_pred             ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcc
Confidence            455788998865 77775      445556432        3456788987666655545555554 3345679999999


Q ss_pred             eEee-cchHHHhH
Q 042938           73 RLVG-GPNQVMSL   84 (106)
Q Consensus        73 ~~iG-g~~~~~~~   84 (106)
                      +.|+ |.-.++..
T Consensus        83 eiVaeGnprlKdi   95 (106)
T COG4837          83 EIVAEGNPRLKDI   95 (106)
T ss_pred             eEeecCCchHHHH
Confidence            9997 55455443

>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]

Probab=97.20  E-value=0.0028  Score=43.48  Aligned_cols=63  Identities=11%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHH
Q 042938           20 ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHV   86 (106)
Q Consensus        20 ~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~   86 (106)
                      .||+|+++-..|...+++|....||.....++    +...+....+|.+-.||+.+-..+.+....+
T Consensus        20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~----f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Le   82 (221)
T KOG1422|consen   20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEW----FLDISPGGKPPVLKFDEKWVTDSDKIEEFLE   82 (221)
T ss_pred             CChhHHHHHHHHHHcCCCceEEEeecCCCcHH----HHhhCCCCCCCeEEeCCceeccHHHHHHHHH
Confidence            49999999999999999998877777655554    3344556899999999999999888766543

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=97.20  E-value=0.0018  Score=42.12  Aligned_cols=47  Identities=15%  Similarity=0.166  Sum_probs=29.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--------CCceEEEcccCCCchHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--------ANPTVYELDQIPNGPQIERALQQL   59 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--------v~~~~v~vd~~~~~~~~~~~l~~~   59 (106)
                      ++-|+.+|||.|++....|.+.    .        -.++.+-|+.+++.++++++++..
T Consensus        29 lL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~   87 (146)
T cd03008          29 LLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDM   87 (146)
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHC
Confidence            3458999999999998888652    1        135555555444434444455443

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi

Probab=97.18  E-value=0.004  Score=35.67  Aligned_cols=57  Identities=18%  Similarity=0.226  Sum_probs=43.7

Q ss_pred             CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHH
Q 042938           19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHV   86 (106)
Q Consensus        19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~   86 (106)
                      +.+|+|.++..+|+-.+++|+.+... ++..          +....+|.+..+|+.|++++.+++..+
T Consensus        14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~~----------sp~gkLP~l~~~~~~i~d~~~Ii~~L~   70 (73)
T cd03078          14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPWR----------SPTGKLPALLTSGTKISGPEKIIEYLR   70 (73)
T ss_pred             cCCHHHHHHHHHHHcCCCCEEEEecC-CCCC----------CCCCccCEEEECCEEecChHHHHHHHH
Confidence            44899999999999999999765332 2221          223579999999999999998877543

Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=97.13  E-value=0.0029  Score=39.81  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=16.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||.|......|.+
T Consensus        21 ll~F~atwC~~C~~~~p~l~~   41 (132)
T cd02964          21 GLYFSASWCPPCRAFTPKLVE   41 (132)
T ss_pred             EEEEECCCCchHHHHHHHHHH
Confidence            455889999999987766643

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=97.11  E-value=0.0017  Score=39.49  Aligned_cols=55  Identities=18%  Similarity=0.296  Sum_probs=33.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGFG----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      ++.|+.+|||+|.+....|.+..    -....+-+. +.+.++..+.+++++. ..+|.++
T Consensus        25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~-~~~p~~~   83 (114)
T cd02967          25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGL-EAFPYVL   83 (114)
T ss_pred             EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCC-CCCcEEe
Confidence            56689999999998877776542    223334332 2333445556655543 4577664

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional

Probab=97.08  E-value=0.0062  Score=41.27  Aligned_cols=56  Identities=11%  Similarity=0.132  Sum_probs=41.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      +++|+.+ +|+|.+++-+|.++|++|+.++++..... ...+.+.+.+....||++..
T Consensus         2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~iNP~gkVP~L~~   57 (215)
T PRK13972          2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGG-QFRPEFLRISPNNKIPAIVD   57 (215)
T ss_pred             eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccc-cCCHHHHhhCcCCCCCEEEe
Confidence            5688877 69999999999999999999888764321 11123345576789999987

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=97.05  E-value=0.0029  Score=39.27  Aligned_cols=22  Identities=14%  Similarity=0.271  Sum_probs=18.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+|||.|.+....|.++
T Consensus        29 vv~F~a~~C~~C~~~~~~l~~l   50 (127)
T cd03010          29 LLNVWASWCAPCREEHPVLMAL   50 (127)
T ss_pred             EEEEEcCcCHHHHHHHHHHHHH
Confidence            5678999999999888777655

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=97.05  E-value=0.0022  Score=48.88  Aligned_cols=56  Identities=16%  Similarity=0.291  Sum_probs=35.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC-------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938           13 VVIFSKSECCICFSIQTLICGFG-------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR   73 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~-------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~   73 (106)
                      ++.|+.+|||+|+.+...|++..       +.+-.+|+|.++.  +  .....++ ..++|++  |.+|.
T Consensus       375 LV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~--~~~~~~~-I~~~PTii~Fk~g~  439 (463)
T TIGR00424       375 LVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--E--FAKQELQ-LGSFPTILFFPKHS  439 (463)
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--H--HHHHHcC-CCccceEEEEECCC
Confidence            56699999999999988885542       4455566665432  1  1112234 3678886  56663

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=97.05  E-value=0.0044  Score=48.34  Aligned_cols=59  Identities=7%  Similarity=0.122  Sum_probs=34.4

Q ss_pred             EEEEEcCCCchHHHHHHH-H------hhc-CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-E--CCeE
Q 042938           13 VVIFSKSECCICFSIQTL-I------CGF-GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-I--GQRL   74 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~-L------~~~-~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v--~g~~   74 (106)
                      ++.|+.+||++|+...+. +      +++ ++.+-.+|++.++  ++.++.+++++. ..+|+++ +  ||+.
T Consensus       478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~--~~~~~l~~~~~v-~g~Pt~~~~~~~G~~  547 (571)
T PRK00293        478 MLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANN--AEDVALLKHYNV-LGLPTILFFDAQGQE  547 (571)
T ss_pred             EEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCC--hhhHHHHHHcCC-CCCCEEEEECCCCCC
Confidence            345999999999987654 2      122 2333445555433  233345555554 7889874 4  4554

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=97.04  E-value=0.0031  Score=41.66  Aligned_cols=22  Identities=14%  Similarity=0.170  Sum_probs=17.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+|||.|++....+.+.
T Consensus        67 ll~F~a~wC~~C~~~~p~l~~l   88 (173)
T TIGR00385        67 LLNVWASWCPPCRAEHPYLNEL   88 (173)
T ss_pred             EEEEECCcCHHHHHHHHHHHHH
Confidence            5668999999999887777554

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=96.96  E-value=0.0073  Score=37.71  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=16.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||.|++....|.+
T Consensus        22 ll~Fwa~wC~~C~~~~p~l~~   42 (131)
T cd03009          22 GLYFSASWCPPCRAFTPKLVE   42 (131)
T ss_pred             EEEEECCCChHHHHHhHHHHH
Confidence            455889999999987766643

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.0031  Score=42.49  Aligned_cols=68  Identities=10%  Similarity=0.205  Sum_probs=45.0

Q ss_pred             EEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           16 FSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        16 f~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      |+++.|.+  ++|-.|.-+|++|+++-|+-..+..+.-..+++.+...+||.+.+||..+-..--++...
T Consensus        11 YWrSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YL   78 (217)
T KOG0868|consen   11 YWRSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYL   78 (217)
T ss_pred             hhcccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHH
Confidence            56788876  556666666777776666554333332235566677789999999998877665555543

>PTZ00102 disulphide isomerase; Provisional

Probab=96.93  E-value=0.0029  Score=47.53  Aligned_cols=65  Identities=15%  Similarity=0.227  Sum_probs=37.2

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICG-------FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ   72 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g   72 (106)
                      +++++..++  ++.|+.+||++|+++...+.+       .+.++....||-..+.    +...+++ ..++|++  |-+|
T Consensus        42 f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~----~l~~~~~-i~~~Pt~~~~~~g  116 (477)
T PTZ00102         42 FDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM----ELAQEFG-VRGYPTIKFFNKG  116 (477)
T ss_pred             HHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH----HHHHhcC-CCcccEEEEEECC
Confidence            445555454  577999999999988765543       2223444444433322    1333334 3778886  4566


Q ss_pred             e
Q 042938           73 R   73 (106)
Q Consensus        73 ~   73 (106)
                      .
T Consensus       117 ~  117 (477)
T PTZ00102        117 N  117 (477)
T ss_pred             c
Confidence            4

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.93  E-value=0.0017  Score=38.69  Aligned_cols=53  Identities=15%  Similarity=0.201  Sum_probs=34.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCC-CCccEEEE
Q 042938           12 PVVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQ-PTVPAVFI   70 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~-~tvP~ifv   70 (106)
                      -+++|+.++|+.|..++..|.+..      +.+-.+|++..+.      .+..++.. .++|++.+
T Consensus        15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~------~~~~~~i~~~~~P~~~~   74 (103)
T cd02982          15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR------HLEYFGLKEEDLPVIAI   74 (103)
T ss_pred             EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH------HHHHcCCChhhCCEEEE
Confidence            466788999999999999886643      3444555555322      33334542 28999853

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait

Probab=96.92  E-value=0.0094  Score=34.42  Aligned_cols=56  Identities=14%  Similarity=0.223  Sum_probs=42.6

Q ss_pred             CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +..+.|.++..+|+..|++|+.++....+       .   .+....+|.+.+||+.|++..-+...
T Consensus        15 ~~~~~~~kv~~~L~elglpye~~~~~~~~-------~---~~P~GkVP~L~~dg~vI~eS~aIl~y   70 (74)
T cd03079          15 PDNASCLAVQTFLKMCNLPFNVRCRANAE-------F---MSPSGKVPFIRVGNQIVSEFGPIVQF   70 (74)
T ss_pred             CCCCCHHHHHHHHHHcCCCcEEEecCCcc-------c---cCCCCcccEEEECCEEEeCHHHHHHH
Confidence            56889999999999999999988542211       1   12235799999999999988877654

Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.

>PRK11752 putative S-transferase; Provisional

Probab=96.89  E-value=0.01  Score=41.83  Aligned_cols=73  Identities=10%  Similarity=0.150  Sum_probs=49.9

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC----eEeecc
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ----RLVGGP   78 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g----~~iGg~   78 (106)
                      ..+++.+|+.+ +|+|.+++-+|.++      |++|+.+.|+...... ..+.+.+.+...+||++..++    ..+...
T Consensus        41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~-~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES  118 (264)
T PRK11752         41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQ-FSSGFVEINPNSKIPALLDRSGNPPIRVFES  118 (264)
T ss_pred             CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccc-cCHHHHhhCCCCCCCEEEeCCCCCCeEEEcH
Confidence            45579999865 99999999999997      8889888776532210 112334456668999998753    455555


Q ss_pred             hHHHh
Q 042938           79 NQVMS   83 (106)
Q Consensus        79 ~~~~~   83 (106)
                      ..+..
T Consensus       119 ~AIl~  123 (264)
T PRK11752        119 GAILL  123 (264)
T ss_pred             HHHHH
Confidence            55544

>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione

Probab=96.83  E-value=0.026  Score=32.22  Aligned_cols=68  Identities=13%  Similarity=0.136  Sum_probs=46.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCC-CCccEEEEC-CeEeecchHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQ-PTVPAVFIG-QRLVGGPNQVMS   83 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~-~tvP~ifv~-g~~iGg~~~~~~   83 (106)
                      +.+|..++  .|..++-+|...|++|+.+.++.......- +.+.+.+.. ..+|.+..+ |..+-....+..
T Consensus         3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~-~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~   72 (76)
T PF02798_consen    3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKS-PEFLAINPMFGKVPALEDGDGFVLTESNAILR   72 (76)
T ss_dssp             EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGS-HHHHHHTTTSSSSSEEEETTTEEEESHHHHHH
T ss_pred             EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccc-hhhhhcccccceeeEEEECCCCEEEcHHHHHH
Confidence            45666666  889999999999999999888754332111 233444555 799999999 888777665544

The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=96.83  E-value=0.0042  Score=39.71  Aligned_cols=27  Identities=11%  Similarity=0.225  Sum_probs=18.5

Q ss_pred             HhhhhCCC--EEEEEcCCCchHHHHHHHH
Q 042938            5 TRMVNEKP--VVIFSKSECCICFSIQTLI   31 (106)
Q Consensus         5 ~~~~~~~~--v~vf~~~~Cp~C~~~~~~L   31 (106)
                      ..+-++++  +++|+++|||+|++..+..
T Consensus        17 ~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~   45 (130)
T cd02960          17 YKAKKSNKPLMVIHHLEDCPHSQALKKAF   45 (130)
T ss_pred             HHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence            34444444  4558999999999887643

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=96.80  E-value=0.014  Score=39.15  Aligned_cols=30  Identities=13%  Similarity=0.403  Sum_probs=20.0

Q ss_pred             EEEEEcCCCchHHHHHHHH----hhcCCCceEEE
Q 042938           13 VVIFSKSECCICFSIQTLI----CGFGANPTVYE   42 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~   42 (106)
                      ++.|+.+|||.|.+....+    ++.++.+..+.
T Consensus        78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is  111 (189)
T TIGR02661        78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS  111 (189)
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence            5568999999999776555    33455444443

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=96.78  E-value=0.0088  Score=44.48  Aligned_cols=67  Identities=16%  Similarity=0.213  Sum_probs=39.7

Q ss_pred             HHHhhhhCCC--EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EEC
Q 042938            3 MVTRMVNEKP--VVIFSKSECCICFSIQTLICG-------FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIG   71 (106)
Q Consensus         3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~   71 (106)
                      .+.++++.++  ++.|+.+||++|++....+.+       .+-.+....||.+.. .+   ...+++ ..++|++  |.+
T Consensus        10 ~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~---l~~~~~-i~~~Pt~~~~~~   84 (462)
T TIGR01130        10 NFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KD---LAQKYG-VSGYPTLKIFRN   84 (462)
T ss_pred             HHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HH---HHHhCC-CccccEEEEEeC
Confidence            3456666665  566999999999988766643       232234444444333 12   333334 4778886  556


Q ss_pred             CeE
Q 042938           72 QRL   74 (106)
Q Consensus        72 g~~   74 (106)
                      |+.
T Consensus        85 g~~   87 (462)
T TIGR01130        85 GED   87 (462)
T ss_pred             Ccc
Confidence            654

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PLN02309 5'-adenylylsulfate reductase

Probab=96.71  E-value=0.0068  Score=46.18  Aligned_cols=54  Identities=13%  Similarity=0.277  Sum_probs=33.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC-------CCceEEEcccCCCchHHHHHHH-HhCCCCCccEE--EECC
Q 042938           13 VVIFSKSECCICFSIQTLICGFG-------ANPTVYELDQIPNGPQIERALQ-QLGCQPTVPAV--FIGQ   72 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~-------v~~~~v~vd~~~~~~~~~~~l~-~~~~~~tvP~i--fv~g   72 (106)
                      ++.|+.||||+|+.+...+.++.       +.+-.+|+|.. . .+   ... .++ ..++|++  |.+|
T Consensus       369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~-~-~~---la~~~~~-I~~~PTil~f~~g  432 (457)
T PLN02309        369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD-Q-KE---FAKQELQ-LGSFPTILLFPKN  432 (457)
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc-c-hH---HHHhhCC-CceeeEEEEEeCC
Confidence            67799999999999888886542       33444455421 1 12   222 234 3788887  4455

>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=96.69  E-value=0.033  Score=32.34  Aligned_cols=70  Identities=11%  Similarity=-0.022  Sum_probs=45.0

Q ss_pred             EEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchH-HHHHHHHh----CCCCCccEEEECCeEeecchHHHhH
Q 042938           15 IFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQ-IERALQQL----GCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        15 vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~-~~~~l~~~----~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +|+-..-+.|.+++-+|...|++|+.+.++..+.... -.+.+...    ....++|++..||..+....-+...
T Consensus         3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~Y   77 (82)
T cd03075           3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRY   77 (82)
T ss_pred             EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHH
Confidence            4444455788999999999999999888875432100 01122111    1456999999998777666555443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.0063  Score=42.98  Aligned_cols=56  Identities=18%  Similarity=0.268  Sum_probs=39.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCC-----ceEEEcccCCCchHHHHHHHHhCCCCCccE--EEECCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGFGAN-----PTVYELDQIPNGPQIERALQQLGCQPTVPA--VFIGQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~-----~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~--ifv~g~~i   75 (106)
                      +|=|+.+||..|+++..++..+.-.     |-.+|||.-...+.      . .+....|+  +|.||.-|
T Consensus        25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa------~-~gV~amPTFiff~ng~ki   87 (288)
T KOG0908|consen   25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAA------T-NGVNAMPTFIFFRNGVKI   87 (288)
T ss_pred             EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhh------h-cCcccCceEEEEecCeEe
Confidence            4559999999999999999887544     45677776544322      1 34466676  48899654

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=96.60  E-value=0.052  Score=34.01  Aligned_cols=68  Identities=7%  Similarity=0.014  Sum_probs=42.1

Q ss_pred             HHhhhhCCC--EEEEEc--CCCc---hHHHHHHHHhhcC--CCceEEEcccCCCchHHHHHHHHhCCCC--CccEE--EE
Q 042938            4 VTRMVNEKP--VVIFSK--SECC---ICFSIQTLICGFG--ANPTVYELDQIPNGPQIERALQQLGCQP--TVPAV--FI   70 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~--~~Cp---~C~~~~~~L~~~~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~--tvP~i--fv   70 (106)
                      +.+.++.++  +|-|..  |||.   +|.++..-+....  +.+-.+|.+...+.++ .+...+++. .  .+|+|  |.
T Consensus        11 F~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~-~~L~~~y~I-~~~gyPTl~lF~   88 (116)
T cd03007          11 FYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLN-MELGERYKL-DKESYPVIYLFH   88 (116)
T ss_pred             HHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhh-HHHHHHhCC-CcCCCCEEEEEe
Confidence            456666666  466999  8898   8888876665443  5556667655333222 234344444 5  79986  67


Q ss_pred             CCe
Q 042938           71 GQR   73 (106)
Q Consensus        71 ~g~   73 (106)
                      +|.
T Consensus        89 ~g~   91 (116)
T cd03007          89 GGD   91 (116)
T ss_pred             CCC
Confidence            773

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=96.52  E-value=0.0074  Score=35.69  Aligned_cols=47  Identities=17%  Similarity=0.200  Sum_probs=28.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHh
Q 042938           12 PVVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQL   59 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~   59 (106)
                      -++.|+.+|||+|.+....|.+.       ++.+-.+++|.. ..+.+.+++.+.
T Consensus        22 ~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~-~~~~~~~~~~~~   75 (116)
T cd02966          22 VLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD-DPAAVKAFLKKY   75 (116)
T ss_pred             EEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC-CHHHHHHHHHHc
Confidence            36778999999999776666443       233444455443 244455555443

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.01  Score=45.58  Aligned_cols=66  Identities=17%  Similarity=0.209  Sum_probs=42.8

Q ss_pred             HHhhhhCCCE--EEEEcCCCchHHH-------HHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938            4 VTRMVNEKPV--VIFSKSECCICFS-------IQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ   72 (106)
Q Consensus         4 ~~~~~~~~~v--~vf~~~~Cp~C~~-------~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g   72 (106)
                      +.+.|..+..  +-|+.|||.+|.+       +.+.|.+.+-+...-.||...+.    +...+++ .+.+|++  |.||
T Consensus        35 f~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~----~~~~~y~-v~gyPTlkiFrnG  109 (493)
T KOG0190|consen   35 FKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES----DLASKYE-VRGYPTLKIFRNG  109 (493)
T ss_pred             HHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh----hhHhhhc-CCCCCeEEEEecC
Confidence            5566777764  5599999999985       44556666555556666665542    2333334 3778875  8888


Q ss_pred             eE
Q 042938           73 RL   74 (106)
Q Consensus        73 ~~   74 (106)
                      +.
T Consensus       110 ~~  111 (493)
T KOG0190|consen  110 RS  111 (493)
T ss_pred             Cc
Confidence            74

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=96.44  E-value=0.01  Score=36.49  Aligned_cols=29  Identities=21%  Similarity=0.305  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceE
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTV   40 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~   40 (106)
                      -++.|+.+|||+|......|.+..-.+..
T Consensus        23 ~vl~F~~~~C~~C~~~~~~l~~~~~~~~~   51 (123)
T cd03011          23 VLVYFWATWCPVCRFTSPTVNQLAADYPV   51 (123)
T ss_pred             EEEEEECCcChhhhhhChHHHHHHhhCCE
Confidence            46778999999999887777654333333

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK10542 glutathionine S-transferase; Provisional

Probab=96.41  E-value=0.018  Score=38.38  Aligned_cols=70  Identities=14%  Similarity=0.175  Sum_probs=45.4

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSL   84 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~   84 (106)
                      .+|+.++ +.+.+++-+|.++|++|+.+.|+.......-.+.+.+.+....+|++.+ ||..|-....+...
T Consensus         2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~Y   72 (201)
T PRK10542          2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQY   72 (201)
T ss_pred             ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHH
Confidence            4666543 3467888899999999998877754221000023445566789999986 66677666555553

>PTZ00102 disulphide isomerase; Provisional

Probab=96.41  E-value=0.0065  Score=45.68  Aligned_cols=22  Identities=9%  Similarity=0.262  Sum_probs=18.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+||++|+.....+.+.
T Consensus       379 lv~f~a~wC~~C~~~~p~~~~~  400 (477)
T PTZ00102        379 LLEIYAPWCGHCKNLEPVYNEL  400 (477)
T ss_pred             EEEEECCCCHHHHHHHHHHHHH
Confidence            5668999999999999888664

>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins

Probab=96.35  E-value=0.023  Score=36.02  Aligned_cols=58  Identities=22%  Similarity=0.358  Sum_probs=39.0

Q ss_pred             HHHHHHhhcCCCceEEEcccCCCc----hHHHHHHHHhCCCCCccEEEECCeEe--ecchHHHhH
Q 042938           26 SIQTLICGFGANPTVYELDQIPNG----PQIERALQQLGCQPTVPAVFIGQRLV--GGPNQVMSL   84 (106)
Q Consensus        26 ~~~~~L~~~~v~~~~v~vd~~~~~----~~~~~~l~~~~~~~tvP~ifv~g~~i--Gg~~~~~~~   84 (106)
                      .+...|.+.|++...+++.++|..    +.+.+.|...|. ..+|.++|||+.+  |.+-+..++
T Consensus        31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~-e~LPitlVdGeiv~~G~YPt~eEl   94 (123)
T PF06953_consen   31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGA-EALPITLVDGEIVKTGRYPTNEEL   94 (123)
T ss_dssp             HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-G-GG-SEEEETTEEEEESS---HHHH
T ss_pred             HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCc-ccCCEEEECCEEEEecCCCCHHHH
Confidence            445677888999999999999875    337777776665 8999999999865  666554444

ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=96.29  E-value=0.018  Score=35.76  Aligned_cols=55  Identities=15%  Similarity=0.222  Sum_probs=32.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C-CCceEEEccc-----CCCchHHHHHHHHhCCCCCccEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G-ANPTVYELDQ-----IPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~-v~~~~v~vd~-----~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      ++.|+.+|||+|.+....|.++    + -.+..+-|..     ..+.+.+++++++.+  .++|.+.
T Consensus        27 vl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~   91 (126)
T cd03012          27 LLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYG--ITYPVAN   91 (126)
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcC--CCCCEEE
Confidence            5668999999999876666443    2 2234444432     123445666666544  3577543

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PTZ00057 glutathione s-transferase; Provisional

Probab=96.28  E-value=0.047  Score=36.77  Aligned_cols=72  Identities=8%  Similarity=0.080  Sum_probs=51.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCch--HHHHHHH-HhCCCCCccEEEECCeEeecchHHHh
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGP--QIERALQ-QLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~--~~~~~l~-~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      .++++|+-+..+.|.+++-+|...|++|+.+.++.... .  +..+... ..+....+|++.+||..+....-+..
T Consensus         3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~-~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~   77 (205)
T PTZ00057          3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGD-AFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR   77 (205)
T ss_pred             CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccch-HHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence            34789998889999999999999999999987753221 1  1111111 23566799999999987776665544

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=96.27  E-value=0.013  Score=38.52  Aligned_cols=44  Identities=14%  Similarity=0.127  Sum_probs=32.1

Q ss_pred             EEEcCCCchHHHHH----HHHh---hcCCCceEEEcccCCCchHHHHHHHH
Q 042938           15 IFSKSECCICFSIQ----TLIC---GFGANPTVYELDQIPNGPQIERALQQ   58 (106)
Q Consensus        15 vf~~~~Cp~C~~~~----~~L~---~~~v~~~~v~vd~~~~~~~~~~~l~~   58 (106)
                      .|+..|||.|+...    ++++   +.+.+++++=|+.+.+.+++.+++..
T Consensus        39 yFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~   89 (157)
T KOG2501|consen   39 YFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLE   89 (157)
T ss_pred             EEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHh
Confidence            36779999999554    3333   34566999989988888777777764

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=96.15  E-value=0.044  Score=35.58  Aligned_cols=21  Identities=14%  Similarity=0.145  Sum_probs=16.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|......|.+
T Consensus        65 ~l~f~a~~C~~C~~~~~~l~~   85 (173)
T PRK03147         65 FLNFWGTWCKPCEKEMPYMNE   85 (173)
T ss_pred             EEEEECCcCHHHHHHHHHHHH
Confidence            567889999999976655533

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.11  E-value=0.024  Score=37.53  Aligned_cols=19  Identities=16%  Similarity=0.583  Sum_probs=16.8

Q ss_pred             EEEEEcCCCchHHHHHHHH
Q 042938           13 VVIFSKSECCICFSIQTLI   31 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L   31 (106)
                      +.+|.+++|+||.+.++-+
T Consensus        46 llmfes~~C~yC~~~KKd~   64 (182)
T COG2143          46 LLMFESNGCSYCERFKKDL   64 (182)
T ss_pred             EEEEcCCCChHHHHHHHhh
Confidence            7899999999999887665

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=96.01  E-value=0.068  Score=32.70  Aligned_cols=68  Identities=16%  Similarity=0.161  Sum_probs=36.9

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHH-HHHhhc------CCCceEEEcccC-CCchHHHHHHHHhCCCCCccEE-EE--
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQ-TLICGF------GANPTVYELDQI-PNGPQIERALQQLGCQPTVPAV-FI--   70 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~-~~L~~~------~v~~~~v~vd~~-~~~~~~~~~l~~~~~~~tvP~i-fv--   70 (106)
                      ++.+-++++  ++.+..++|++|+... .+|...      +-.|..+.+|.. +++.+   ....++ ...+|.+ |+  
T Consensus        10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~---~~~~~~-~~~~P~~~~i~~   85 (114)
T cd02958          10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQR---FLQSYK-VDKYPHIAIIDP   85 (114)
T ss_pred             HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHH---HHHHhC-ccCCCeEEEEeC
Confidence            344444444  3456889999999874 355433      223544444443 23333   434444 3789987 45  


Q ss_pred             -CCeEe
Q 042938           71 -GQRLV   75 (106)
Q Consensus        71 -~g~~i   75 (106)
                       +|+.+
T Consensus        86 ~~g~~l   91 (114)
T cd02958          86 RTGEVL   91 (114)
T ss_pred             ccCcEe
Confidence             45443

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=96.00  E-value=0.028  Score=36.33  Aligned_cols=77  Identities=17%  Similarity=0.232  Sum_probs=53.3

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecc---hHHHhHH
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGP---NQVMSLH   85 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~---~~~~~~~   85 (106)
                      ....+++|..|+|.=|..-.+.|+..|++...++.+....   +++-+.--....+.=+..|||.+|-|-   +++..+.
T Consensus        24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~a---lK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll  100 (149)
T COG3019          24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLA---LKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLL  100 (149)
T ss_pred             ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHH---HHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHH
Confidence            3557999999999999999999999999888776665332   222211111124667899999999886   4555554


Q ss_pred             HhC
Q 042938           86 VQN   88 (106)
Q Consensus        86 ~~g   88 (106)
                      +++
T Consensus       101 ~~~  103 (149)
T COG3019         101 AEK  103 (149)
T ss_pred             hCC
Confidence            443

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=95.91  E-value=0.045  Score=34.64  Aligned_cols=43  Identities=23%  Similarity=0.275  Sum_probs=25.9

Q ss_pred             EEEEEcC-CCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHH
Q 042938           13 VVIFSKS-ECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQ   58 (106)
Q Consensus        13 v~vf~~~-~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~   58 (106)
                      ++.|+.+ |||+|..-...|.++       ++.+..+..+.++.   +.+++.+
T Consensus        32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~---~~~~~~~   82 (146)
T PF08534_consen   32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP---VREFLKK   82 (146)
T ss_dssp             EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH---HHHHHHH
T ss_pred             EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH---HHHHHHh
Confidence            5668888 999999776555443       45554454444332   4455554

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PTZ00056 glutathione peroxidase; Provisional

Probab=95.89  E-value=0.034  Score=37.72  Aligned_cols=54  Identities=15%  Similarity=0.135  Sum_probs=30.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEccc----C-CCchHHHHHHHHhCCCCCccEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQ----I-PNGPQIERALQQLGCQPTVPAV   68 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~----~-~~~~~~~~~l~~~~~~~tvP~i   68 (106)
                      ++.|+.+|||+|.+-...|.++       |+.+--+.++.    . .+.+++++++++.+  .++|.+
T Consensus        43 lv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~--~~fpvl  108 (199)
T PTZ00056         43 MITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNK--IKYNFF  108 (199)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcC--CCceee
Confidence            4568999999998655445443       34333333332    1 23345667766544  356654

>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.071  Score=36.82  Aligned_cols=72  Identities=11%  Similarity=0.098  Sum_probs=54.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      ++.+|+.+.-|.|.++...+...|++|+.+.++.......-.+++ ..+...+||++.-+|-.+-....+...
T Consensus         2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl-~~nP~~kVP~l~d~~~~l~eS~AI~~Y   73 (226)
T KOG0867|consen    2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFL-KLNPLGKVPALEDGGLTLWESHAILRY   73 (226)
T ss_pred             CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHH-hcCcCCCCCeEecCCeEEeeHHHHHHH
Confidence            568999999999999999999999999988666542211122344 556668999999998877777665554

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=95.76  E-value=0.012  Score=41.44  Aligned_cols=21  Identities=19%  Similarity=0.358  Sum_probs=17.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHh
Q 042938           12 PVVIFSKSECCICFSIQTLIC   32 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~   32 (106)
                      .|++|+-+.||||+++...+.
T Consensus       120 ~I~vFtDp~CpyC~kl~~~l~  140 (251)
T PRK11657        120 IVYVFADPNCPYCKQFWQQAR  140 (251)
T ss_pred             EEEEEECCCChhHHHHHHHHH
Confidence            388999999999999866654

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=95.75  E-value=0.035  Score=35.75  Aligned_cols=55  Identities=13%  Similarity=0.058  Sum_probs=30.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEc--cc----C-CCchHHHHHHHHhCCCCCccEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYEL--DQ----I-PNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~v--d~----~-~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      ++.|+.+||| |.+-...|.++.     -.+..+-|  +.    . .+.+.++++++...+ .++|.+.
T Consensus        26 vl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~-~~fp~~~   92 (152)
T cd00340          26 LIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYG-VTFPMFA   92 (152)
T ss_pred             EEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcC-CCceeee
Confidence            4558999999 987666665431     22344433  32    1 223446667654222 4678653

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.051  Score=37.64  Aligned_cols=72  Identities=24%  Similarity=0.368  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCc--eEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee----cchHHHh
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANP--TVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG----GPNQVMS   83 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~--~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG----g~~~~~~   83 (106)
                      .-.|-||+-.+|..|-..-+.|++.|..-  +.++-...+.     .+++  .+.-++|.||+||+.+-    .++++.+
T Consensus        10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f-----~~~~--~~V~SvP~Vf~DGel~~~dpVdp~~ies   82 (265)
T COG5494          10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPF-----LAFE--KGVISVPSVFIDGELVYADPVDPEEIES   82 (265)
T ss_pred             heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChH-----HHhh--cceeecceEEEcCeEEEcCCCCHHHHHH
Confidence            34688999999999999999999999754  4444333222     1222  34589999999999763    3455555


Q ss_pred             HHHhCC
Q 042938           84 LHVQNE   89 (106)
Q Consensus        84 ~~~~g~   89 (106)
                      +. +|.
T Consensus        83 ~~-~G~   87 (265)
T COG5494          83 IL-SGQ   87 (265)
T ss_pred             HH-cCc
Confidence            43 453

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=95.55  E-value=0.062  Score=36.27  Aligned_cols=35  Identities=20%  Similarity=0.120  Sum_probs=26.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhc---CCCc------eEEEcccC
Q 042938           12 PVVIFSKSECCICFSIQTLICGF---GANP------TVYELDQI   46 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~---~v~~------~~v~vd~~   46 (106)
                      .++-|+.+|||.|+.-..+|.++   |+++      ..+++|..
T Consensus        62 ~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~  105 (184)
T TIGR01626        62 RVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA  105 (184)
T ss_pred             EEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence            46779999999999877777554   6776      66776654

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]

Probab=95.45  E-value=0.035  Score=39.48  Aligned_cols=52  Identities=8%  Similarity=0.224  Sum_probs=42.0

Q ss_pred             CchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938           21 CCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus        21 Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      .|||-++..+|...+++|+.++-...           ..+...++|-|-.||++|-+.+-+..
T Consensus        61 SPfClKvEt~lR~~~IpYE~~~~~~~-----------~rSr~G~lPFIELNGe~iaDS~~I~~  112 (281)
T KOG4244|consen   61 SPFCLKVETFLRAYDIPYEIVDCSLK-----------RRSRNGTLPFIELNGEHIADSDLIED  112 (281)
T ss_pred             ChHHHHHHHHHHHhCCCceeccccce-----------eeccCCCcceEEeCCeeccccHHHHH
Confidence            67999999999999999998754432           11345689999999999999986654

>PHA03075 glutaredoxin-like protein; Provisional

Probab=95.41  E-value=0.023  Score=35.59  Aligned_cols=32  Identities=19%  Similarity=0.486  Sum_probs=27.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEc
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYEL   43 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~v   43 (106)
                      .+++|++|.|+-|.-+.++|.++.-+|+.+-|
T Consensus         4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrV   35 (123)
T PHA03075          4 TLILFGKPLCSVCESISEALKELEDEYDILRV   35 (123)
T ss_pred             eEEEeCCcccHHHHHHHHHHHHhhccccEEEE
Confidence            47899999999999999999888877766433

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=95.34  E-value=0.082  Score=33.11  Aligned_cols=55  Identities=15%  Similarity=0.227  Sum_probs=31.3

Q ss_pred             EEEEEcCCCch-HHHHHHHHhhc-------C---CCceEEEcccC-CCchHHHHHHHHhCCCCCccEEE
Q 042938           13 VVIFSKSECCI-CFSIQTLICGF-------G---ANPTVYELDQI-PNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus        13 v~vf~~~~Cp~-C~~~~~~L~~~-------~---v~~~~v~vd~~-~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      +++|+.++||+ |.+....|.+.       +   +.+-.+.+|.. +....++++++.++  ..+|.+.
T Consensus        26 vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~--~~~~~l~   92 (142)
T cd02968          26 LVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFG--PGWIGLT   92 (142)
T ss_pred             EEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhC--CCcEEEE
Confidence            66789999998 98655555332       2   44444444443 23344666666554  3555443

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=95.32  E-value=0.087  Score=37.49  Aligned_cols=81  Identities=14%  Similarity=0.236  Sum_probs=48.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecchHHHhH-
Q 042938           13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGPNQVMSL-   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~~~~~~~-   84 (106)
                      |+-++.+++|.|..+-..|..+.     +.|-.+.....+....       +. ...+|+|  |.+|..++.+-.+..+ 
T Consensus       150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~-------f~-~~~LPtllvYk~G~l~~~~V~l~~~~  221 (265)
T PF02114_consen  150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCPASEN-------FP-DKNLPTLLVYKNGDLIGNFVGLTDLL  221 (265)
T ss_dssp             EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTT-------S--TTC-SEEEEEETTEEEEEECTGGGCT
T ss_pred             EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccCcccC-------Cc-ccCCCEEEEEECCEEEEeEEehHHhc
Confidence            45589999999998887776652     4444444443332111       12 2568886  5799877765443322 


Q ss_pred             ---HHhCCchHHHHhcCcee
Q 042938           85 ---HVQNELGPLLVRAGAIW  101 (106)
Q Consensus        85 ---~~~g~L~~~L~~~g~~~  101 (106)
                         .....|+.+|.+.|++.
T Consensus       222 g~df~~~dlE~~L~~~G~l~  241 (265)
T PF02114_consen  222 GDDFFTEDLEAFLIEYGVLP  241 (265)
T ss_dssp             -TT--HHHHHHHHHTTTSSS
T ss_pred             CCCCCHHHHHHHHHHcCCCC
Confidence               23347899999999863

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space

Probab=95.12  E-value=0.18  Score=28.87  Aligned_cols=54  Identities=19%  Similarity=0.171  Sum_probs=42.5

Q ss_pred             CCchHHHHHHHHhhcCCC---ceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhH
Q 042938           20 ECCICFSIQTLICGFGAN---PTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSL   84 (106)
Q Consensus        20 ~Cp~C~~~~~~L~~~~v~---~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~   84 (106)
                      -.|.|.++..+|+-.+.+   ++.+.... +..          +....+|.+.. +|+.+.|+.++.+.
T Consensus        13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~~----------Sptg~LP~L~~~~~~~vsg~~~Iv~y   70 (72)
T PF10568_consen   13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-PWL----------SPTGELPALIDSGGTWVSGFRNIVEY   70 (72)
T ss_pred             cCHHHHHHHHHHHhCCCCCceEEEEEcCC-CCc----------CCCCCCCEEEECCCcEEECHHHHHHh
Confidence            378999999999999998   66655443 221          33468999999 99999999998875

In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.11  E-value=0.062  Score=33.93  Aligned_cols=30  Identities=17%  Similarity=0.172  Sum_probs=20.1

Q ss_pred             CCCchHHHHHHHHhh----c--CCCceEEEcccCCC
Q 042938           19 SECCICFSIQTLICG----F--GANPTVYELDQIPN   48 (106)
Q Consensus        19 ~~Cp~C~~~~~~L~~----~--~v~~~~v~vd~~~~   48 (106)
                      ||||+|.+|...+.+    .  ++.+..++|...+.
T Consensus        43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~   78 (128)
T KOG3425|consen   43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPY   78 (128)
T ss_pred             cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCc
Confidence            889999999877744    2  34455566665543

>smart00594 UAS UAS domain

Probab=95.08  E-value=0.28  Score=30.49  Aligned_cols=62  Identities=13%  Similarity=0.165  Sum_probs=32.5

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHH-HHHhhcC------CCceEEEcccC-CCchHHHHHHHHhCCCCCccEEE
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQ-TLICGFG------ANPTVYELDQI-PNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~-~~L~~~~------v~~~~v~vd~~-~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      ++++.++.+  ++.+..++|++|.... .+|....      -.|-..-+|.. +++.   +....++ ..++|.+.
T Consensus        20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~---~l~~~~~-~~~~P~~~   91 (122)
T smart00594       20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQ---RVSQFYK-LDSFPYVA   91 (122)
T ss_pred             HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHH---HHHHhcC-cCCCCEEE
Confidence            344445433  4557889999998753 3443322      13444333332 2222   2333334 37889874

>PLN02412 probable glutathione peroxidase

Probab=95.06  E-value=0.15  Score=33.43  Aligned_cols=21  Identities=14%  Similarity=0.112  Sum_probs=14.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||.|.+-...|.+
T Consensus        33 lv~f~a~~C~~c~~e~~~l~~   53 (167)
T PLN02412         33 LIVNVASKCGLTDSNYKELNV   53 (167)
T ss_pred             EEEEeCCCCCChHHHHHHHHH
Confidence            345889999999964444433

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=95.02  E-value=0.063  Score=39.94  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=18.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+||++|......+.+.
T Consensus       368 lv~f~a~wC~~C~~~~p~~~~~  389 (462)
T TIGR01130       368 LVEFYAPWCGHCKNLAPIYEEL  389 (462)
T ss_pred             EEEEECCCCHhHHHHHHHHHHH
Confidence            5669999999999888777553

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00256 glutathione peroxidase; Provisional

Probab=94.99  E-value=0.11  Score=34.66  Aligned_cols=54  Identities=17%  Similarity=0.174  Sum_probs=28.8

Q ss_pred             EEEEcCCCchHHHHHHHHhh-------cCCCceEEEccc----C-CCchHHHHHHHHhCCCCCccEE
Q 042938           14 VIFSKSECCICFSIQTLICG-------FGANPTVYELDQ----I-PNGPQIERALQQLGCQPTVPAV   68 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~----~-~~~~~~~~~l~~~~~~~tvP~i   68 (106)
                      ++++.+|||+|.+-...|.+       .|+.+--+.++.    . .+..++.+++.+..+ .++|.+
T Consensus        46 v~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~-~~fpv~  111 (183)
T PTZ00256         46 VVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFN-VDFPLF  111 (183)
T ss_pred             EEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHHHHHHHHHhcC-CCCCCc
Confidence            45689999999975544443       244443444332    1 122445555543222 456765

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=94.93  E-value=0.051  Score=42.44  Aligned_cols=91  Identities=20%  Similarity=0.262  Sum_probs=53.4

Q ss_pred             HHHhhhhCCC---EEE-EEcCCCchHHHHHHHHhh-c-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-EC
Q 042938            3 MVTRMVNEKP---VVI-FSKSECCICFSIQTLICG-F-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IG   71 (106)
Q Consensus         3 ~~~~~~~~~~---v~v-f~~~~Cp~C~~~~~~L~~-~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~   71 (106)
                      ++++...+++   |++ |+.+||-.|+..++..-. -     -..+.....|-..+.+++.+.|++++. -.+|.++ .+
T Consensus       464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~-~G~P~~~ff~  542 (569)
T COG4232         464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGV-FGVPTYLFFG  542 (569)
T ss_pred             HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCC-CCCCEEEEEC
Confidence            4566665554   444 999999999988766532 1     112344444544455567789998886 7888874 43


Q ss_pred             --CeEeecchHHHhHHHhCCchHHHHhc
Q 042938           72 --QRLVGGPNQVMSLHVQNELGPLLVRA   97 (106)
Q Consensus        72 --g~~iGg~~~~~~~~~~g~L~~~L~~~   97 (106)
                        |+..-.   +-.....+.+.+.|+++
T Consensus       543 ~~g~e~~~---l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         543 PQGSEPEI---LTGFLTADAFLEHLERA  567 (569)
T ss_pred             CCCCcCcC---CcceecHHHHHHHHHHh
Confidence              332222   22233344566666554

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=94.89  E-value=0.12  Score=43.34  Aligned_cols=22  Identities=14%  Similarity=0.224  Sum_probs=17.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++-|+.+|||.|++....|.++
T Consensus       424 ll~FWAsWC~pC~~e~P~L~~l  445 (1057)
T PLN02919        424 ILDFWTYCCINCMHVLPDLEFL  445 (1057)
T ss_pred             EEEEECCcChhHHhHhHHHHHH
Confidence            4559999999999888777554

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=94.84  E-value=0.11  Score=33.37  Aligned_cols=19  Identities=21%  Similarity=0.216  Sum_probs=14.7

Q ss_pred             EEEEEcCCCchHHHHHHHH
Q 042938           13 VVIFSKSECCICFSIQTLI   31 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L   31 (106)
                      +++|+.+|||+|.+-..-|
T Consensus        26 vv~~~as~C~~c~~~~~~l   44 (153)
T TIGR02540        26 LVVNVASECGFTDQNYRAL   44 (153)
T ss_pred             EEEEeCCCCCchhhhHHHH
Confidence            5779999999998655444

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=94.61  E-value=0.16  Score=35.53  Aligned_cols=20  Identities=15%  Similarity=0.255  Sum_probs=15.0

Q ss_pred             EEEEEcCCCchHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLIC   32 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~   32 (106)
                      ++.|+.+|||.|..-...|.
T Consensus       103 vl~FwAswCp~c~~e~p~L~  122 (236)
T PLN02399        103 LIVNVASKCGLTSSNYSELS  122 (236)
T ss_pred             EEEEEcCCCcchHHHHHHHH
Confidence            56799999999986554443

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=94.60  E-value=0.1  Score=40.52  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=18.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+|||.|.+....|.++
T Consensus        60 vV~FWATWCppCk~emP~L~eL   81 (521)
T PRK14018         60 LIKFWASWCPLCLSELGETEKW   81 (521)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHH
Confidence            4559999999999988877654

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=94.44  E-value=0.049  Score=39.79  Aligned_cols=27  Identities=19%  Similarity=0.308  Sum_probs=23.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCce
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPT   39 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~   39 (106)
                      .+=|+.|||.+|++...+.++.|.+..
T Consensus        47 ~VdFYAPWC~HCKkLePiWdeVG~elk   73 (468)
T KOG4277|consen   47 FVDFYAPWCAHCKKLEPIWDEVGHELK   73 (468)
T ss_pred             EEEeechhhhhcccccchhHHhCcchh
Confidence            566899999999999999999887654

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=94.39  E-value=0.061  Score=41.41  Aligned_cols=26  Identities=15%  Similarity=0.272  Sum_probs=22.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCc
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANP   38 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~   38 (106)
                      .+-|+.|||+||++...++++++-.|
T Consensus       388 LvEfyAPWCgHCk~laP~~eeLAe~~  413 (493)
T KOG0190|consen  388 LVEFYAPWCGHCKALAPIYEELAEKY  413 (493)
T ss_pred             EEEEcCcccchhhhhhhHHHHHHHHh
Confidence            56699999999999999998886544

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=94.28  E-value=0.25  Score=32.25  Aligned_cols=21  Identities=24%  Similarity=0.350  Sum_probs=15.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.++||.|.+...-|.+
T Consensus        29 ll~f~~t~Cp~c~~~~~~l~~   49 (171)
T cd02969          29 VVMFICNHCPYVKAIEDRLNR   49 (171)
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            566889999999865544433

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.23  E-value=0.12  Score=38.77  Aligned_cols=69  Identities=12%  Similarity=0.212  Sum_probs=41.3

Q ss_pred             HHhhhhCCCEEEEEcCCCchHHHHHHHH---hhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeec
Q 042938            4 VTRMVNEKPVVIFSKSECCICFSIQTLI---CGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGG   77 (106)
Q Consensus         4 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L---~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg   77 (106)
                      ++.+-..-...-|.+-+|..|..+.+.|   .-++-..+-.-||-.    -.++.....+. .+||+||.||+..|.
T Consensus       111 ik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa----~Fq~Evear~I-MaVPtvflnGe~fg~  182 (520)
T COG3634         111 IKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGA----LFQDEVEARNI-MAVPTVFLNGEEFGQ  182 (520)
T ss_pred             HHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecch----hhHhHHHhccc-eecceEEEcchhhcc
Confidence            3343334445667776777776665555   445555555555542    23344444443 899999999998774

>cd05295 MDH_like Malate dehydrogenase-like

Probab=94.08  E-value=0.17  Score=38.70  Aligned_cols=68  Identities=15%  Similarity=0.276  Sum_probs=48.2

Q ss_pred             cCCCchHHHHHHHHhhcC---CCceEEEcccCCCchH--HHHHHHHhCC-CCCccEEE---E----CCeEeecchHHHhH
Q 042938           18 KSECCICFSIQTLICGFG---ANPTVYELDQIPNGPQ--IERALQQLGC-QPTVPAVF---I----GQRLVGGPNQVMSL   84 (106)
Q Consensus        18 ~~~Cp~C~~~~~~L~~~~---v~~~~v~vd~~~~~~~--~~~~l~~~~~-~~tvP~if---v----~g~~iGg~~~~~~~   84 (106)
                      +.+|||=.++.-+-+.+.   -.|....|-..|+..+  +++..+..+. +..-|.|.   +    .|..+||++|+.++
T Consensus         1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~   80 (452)
T cd05295           1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY   80 (452)
T ss_pred             CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence            468999999987777764   3488888888887644  3333333332 35779985   3    57899999998875


Q ss_pred             H
Q 042938           85 H   85 (106)
Q Consensus        85 ~   85 (106)
                      .
T Consensus        81 ~   81 (452)
T cd05295          81 A   81 (452)
T ss_pred             H
Confidence            4

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=93.94  E-value=0.048  Score=34.34  Aligned_cols=23  Identities=17%  Similarity=0.314  Sum_probs=18.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhh
Q 042938           11 KPVVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ..|++|+.+.||+|.+....+.+
T Consensus         7 ~~i~~f~D~~Cp~C~~~~~~l~~   29 (154)
T cd03023           7 VTIVEFFDYNCGYCKKLAPELEK   29 (154)
T ss_pred             EEEEEEECCCChhHHHhhHHHHH
Confidence            35788999999999988776655

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=93.79  E-value=0.2  Score=30.46  Aligned_cols=55  Identities=16%  Similarity=0.235  Sum_probs=29.0

Q ss_pred             EEEEEcC-CCchHHHHHHHHhhc----CC-CceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           13 VVIFSKS-ECCICFSIQTLICGF----GA-NPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        13 v~vf~~~-~Cp~C~~~~~~L~~~----~v-~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++.|+.+ +||+|.....-|.+.    .- .+..+-|..++. .++.+.++..+  ..+|.+.-
T Consensus        29 vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~-~~~~~~~~~~~--~~~~~~~D   89 (124)
T PF00578_consen   29 VLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP-EEIKQFLEEYG--LPFPVLSD   89 (124)
T ss_dssp             EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH-HHHHHHHHHHT--CSSEEEEE
T ss_pred             EEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc-cchhhhhhhhc--cccccccC
Confidence            4556666 999997665444332    11 233344443222 24555555544  46666654

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=93.57  E-value=0.18  Score=31.62  Aligned_cols=21  Identities=24%  Similarity=0.445  Sum_probs=14.4

Q ss_pred             EEEE-EcCCCchHHHHHHHHhh
Q 042938           13 VVIF-SKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf-~~~~Cp~C~~~~~~L~~   33 (106)
                      +++| ..+|||.|.+-...|.+
T Consensus        27 vl~f~~~~~Cp~C~~~~~~l~~   48 (149)
T cd02970          27 VVVFYRGFGCPFCREYLRALSK   48 (149)
T ss_pred             EEEEECCCCChhHHHHHHHHHH
Confidence            3444 47899999976655544

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.55  E-value=0.75  Score=31.64  Aligned_cols=69  Identities=9%  Similarity=-0.010  Sum_probs=52.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      ...+++-+....|.-+|.+|.-.|++|+...+...+. .   ..++.......+|++-|||..|...-.+...
T Consensus         3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w---~~~K~~~pfgqlP~l~vDg~~i~QS~AI~Ry   71 (206)
T KOG1695|consen    3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-W---EELKDKMPFGQLPVLEVDGKKLVQSRAILRY   71 (206)
T ss_pred             ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc-h---hhhcccCCCCCCCEEeECCEeeccHHHHHHH
Confidence            4566777888899999999999999999998887654 1   1233334567899999999988776665543

>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family

Probab=93.33  E-value=0.46  Score=32.50  Aligned_cols=50  Identities=14%  Similarity=0.228  Sum_probs=38.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL   59 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~   59 (106)
                      ...+.+|.+..||.|......+..-+-++..+-|++..+...++......
T Consensus       109 ~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~WA~~~  158 (200)
T TIGR03759       109 GGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQWANRH  158 (200)
T ss_pred             CCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHHHHHHc
Confidence            45689999999999998877777778888888888655555566665443

Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.

>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG

Probab=93.25  E-value=0.22  Score=30.36  Aligned_cols=69  Identities=13%  Similarity=0.258  Sum_probs=43.3

Q ss_pred             EEEcCCCchHHHHHHHHhhcCC--CceEEEcccCCCchHHHHHHHHhCC----CCCccEEEECCe-EeecchHHHhHHHh
Q 042938           15 IFSKSECCICFSIQTLICGFGA--NPTVYELDQIPNGPQIERALQQLGC----QPTVPAVFIGQR-LVGGPNQVMSLHVQ   87 (106)
Q Consensus        15 vf~~~~Cp~C~~~~~~L~~~~v--~~~~v~vd~~~~~~~~~~~l~~~~~----~~tvP~ifv~g~-~iGg~~~~~~~~~~   87 (106)
                      ||.-..||.|.....++.....  .++.+++...++.+    .+...+.    ..+.-.+.-+|+ ...|.+-+..+...
T Consensus         1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~   76 (114)
T PF04134_consen    1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQA----LLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR   76 (114)
T ss_pred             CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhh----HHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence            4667889999999999988864  56777774333221    1111111    123334444776 89999988777644

Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].

>TIGR03137 AhpC peroxiredoxin

Probab=93.21  E-value=0.24  Score=33.15  Aligned_cols=21  Identities=19%  Similarity=0.134  Sum_probs=13.3

Q ss_pred             CCEEE-EE-cCCCchHHHHHHHH
Q 042938           11 KPVVI-FS-KSECCICFSIQTLI   31 (106)
Q Consensus        11 ~~v~v-f~-~~~Cp~C~~~~~~L   31 (106)
                      +.++| |+ .+|||.|..-...|
T Consensus        32 k~vvl~F~p~~~cp~C~~el~~l   54 (187)
T TIGR03137        32 KWSVFFFYPADFTFVCPTELEDL   54 (187)
T ss_pred             CEEEEEEECCCcCCcCHHHHHHH
Confidence            34444 44 79999998644333

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=92.99  E-value=0.56  Score=29.10  Aligned_cols=53  Identities=17%  Similarity=0.104  Sum_probs=27.6

Q ss_pred             EEEEE-cCCCchHHHHHHHHhh-------cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938           13 VVIFS-KSECCICFSIQTLICG-------FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      +++|+ ..+||.|.....-|.+       .++.+-.+.+|   +...++.+.++.+. .++|.+.
T Consensus        26 ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d---~~~~~~~~~~~~~~-~~~~~l~   86 (140)
T cd02971          26 VLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD---SPFSHKAWAEKEGG-LNFPLLS   86 (140)
T ss_pred             EEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHhcccC-CCceEEE
Confidence            44445 6799999876544433       34444444433   22334455544432 5666543

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=92.94  E-value=0.053  Score=34.12  Aligned_cols=26  Identities=19%  Similarity=0.243  Sum_probs=15.6

Q ss_pred             CCCchHHHHHHHHhh----c--CCCceEEEcc
Q 042938           19 SECCICFSIQTLICG----F--GANPTVYELD   44 (106)
Q Consensus        19 ~~Cp~C~~~~~~L~~----~--~v~~~~v~vd   44 (106)
                      +|||.|.++...+.+    .  +..+.++.|.
T Consensus        36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG   67 (119)
T PF06110_consen   36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVG   67 (119)
T ss_dssp             BSSHHHHHHHHHHHHHHHH-STTEEEEEEE--
T ss_pred             cccHHHHHHHHHHHHHHHhCCCCceEEEEEcC
Confidence            789999999866643    2  2334455554

; PDB: 1V9W_A 1WOU_A.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=92.91  E-value=0.26  Score=32.70  Aligned_cols=72  Identities=14%  Similarity=0.237  Sum_probs=32.3

Q ss_pred             HHhhhhCCC-EEE-EEcCCCchHHHHH-HHHhh------cCCCceEEEcccCC--CchH-HHHHHHHhCCCCCccEE-EE
Q 042938            4 VTRMVNEKP-VVI-FSKSECCICFSIQ-TLICG------FGANPTVYELDQIP--NGPQ-IERALQQLGCQPTVPAV-FI   70 (106)
Q Consensus         4 ~~~~~~~~~-v~v-f~~~~Cp~C~~~~-~~L~~------~~v~~~~v~vd~~~--~~~~-~~~~l~~~~~~~tvP~i-fv   70 (106)
                      +..+-++++ |.| ++.++|.+|+.+. +.+.+      ++-.|..|-||.++  +.+. ...+....++....|.. |.
T Consensus        30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfl  109 (163)
T PF03190_consen   30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFL  109 (163)
T ss_dssp             HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE
T ss_pred             HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEE
Confidence            334444444 444 5779999999665 34433      34446666666543  3332 22233333455677774 43


Q ss_pred             --CCeEe
Q 042938           71 --GQRLV   75 (106)
Q Consensus        71 --~g~~i   75 (106)
                        +|+.+
T Consensus       110 tPdg~p~  116 (163)
T PF03190_consen  110 TPDGKPF  116 (163)
T ss_dssp             -TTS-EE
T ss_pred             CCCCCee
Confidence              45554

; PDB: 3IRA_A.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=92.87  E-value=0.087  Score=30.51  Aligned_cols=20  Identities=20%  Similarity=0.290  Sum_probs=16.3

Q ss_pred             EEcCCCchHHHHHHHHhhcC
Q 042938           16 FSKSECCICFSIQTLICGFG   35 (106)
Q Consensus        16 f~~~~Cp~C~~~~~~L~~~~   35 (106)
                      |+.+|||+|......|.+..
T Consensus        39 f~~~~C~~C~~~~~~l~~~~   58 (127)
T COG0526          39 FWAPWCPPCRAEAPLLEELA   58 (127)
T ss_pred             EEcCcCHHHHhhchhHHHHH
Confidence            36999999999988886653

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=92.82  E-value=0.11  Score=33.77  Aligned_cols=24  Identities=17%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhh
Q 042938           10 EKPVVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ...|+.|+...||+|.++...+..
T Consensus        16 ~~~i~~f~D~~Cp~C~~~~~~~~~   39 (178)
T cd03019          16 KPEVIEFFSYGCPHCYNFEPILEA   39 (178)
T ss_pred             CcEEEEEECCCCcchhhhhHHHHH
Confidence            345788999999999988766643

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=92.70  E-value=0.86  Score=28.29  Aligned_cols=51  Identities=18%  Similarity=0.202  Sum_probs=26.0

Q ss_pred             EEEEE-cCCCchHHHHHHHHh-------hcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE
Q 042938           13 VVIFS-KSECCICFSIQTLIC-------GFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV   68 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~-------~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i   68 (106)
                      ++.|+ ..+||.|......|.       +.++  ..+-|..+ ....+.++++..+  ..+|.+
T Consensus        27 ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~--~vv~is~d-~~~~~~~~~~~~~--~~~~~l   85 (140)
T cd03017          27 VLYFYPKDDTPGCTKEACDFRDLYEEFKALGA--VVIGVSPD-SVESHAKFAEKYG--LPFPLL   85 (140)
T ss_pred             EEEEeCCCCCCchHHHHHHHHHHHHHHHHCCC--EEEEEcCC-CHHHHHHHHHHhC--CCceEE
Confidence            34455 578999986544432       2344  34444432 2244555655543  356643

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]

Probab=92.06  E-value=0.14  Score=36.55  Aligned_cols=74  Identities=14%  Similarity=0.236  Sum_probs=58.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQ   87 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~   87 (106)
                      .++|--|..=.+.+++-.+.++|+.|+..+|+-... +.....+-+.+....||++.-+...|-..+.++...++
T Consensus        27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~g-eh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr  100 (325)
T KOG4420|consen   27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQG-EHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER  100 (325)
T ss_pred             ceeeecCcccccceeeeehhhcccccceeeccCccc-cccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence            788888999999999999999999999999986422 22223444556667899888888888999999887765

>COG5429 Uncharacterized secreted protein [Function unknown]

Probab=92.05  E-value=0.31  Score=34.25  Aligned_cols=23  Identities=17%  Similarity=0.473  Sum_probs=19.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC
Q 042938           13 VVIFSKSECCICFSIQTLICGFG   35 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~   35 (106)
                      |.+|++.+|..|--+-..|.++.
T Consensus        45 VELfTSQGCsSCPPAd~~l~k~a   67 (261)
T COG5429          45 VELFTSQGCSSCPPADANLAKLA   67 (261)
T ss_pred             EEEeecCCcCCCChHHHHHHHhc
Confidence            67899999999999888887764

>PRK13599 putative peroxiredoxin; Provisional

Probab=92.04  E-value=0.34  Score=33.31  Aligned_cols=32  Identities=9%  Similarity=0.018  Sum_probs=18.5

Q ss_pred             EEEEcCCCchHHHHHHH-------HhhcCCCceEEEccc
Q 042938           14 VIFSKSECCICFSIQTL-------ICGFGANPTVYELDQ   45 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~-------L~~~~v~~~~v~vd~   45 (106)
                      +.|..++||.|..-...       +.+.|+..--+.+|.
T Consensus        34 ~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~   72 (215)
T PRK13599         34 FSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ   72 (215)
T ss_pred             EEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            34677899999863333       334455544444444

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=91.69  E-value=0.19  Score=32.04  Aligned_cols=20  Identities=20%  Similarity=0.368  Sum_probs=15.2

Q ss_pred             CEEEEEcCCCchHHHHHHHH
Q 042938           12 PVVIFSKSECCICFSIQTLI   31 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L   31 (106)
                      .|++|....||+|.++-..+
T Consensus        15 ~v~~f~d~~Cp~C~~~~~~~   34 (162)
T PF13462_consen   15 TVTEFFDFQCPHCAKFHEEL   34 (162)
T ss_dssp             EEEEEE-TTSHHHHHHHHHH
T ss_pred             EEEEEECCCCHhHHHHHHHH
Confidence            47889999999999775444

...

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=91.30  E-value=0.44  Score=30.00  Aligned_cols=21  Identities=14%  Similarity=0.180  Sum_probs=13.8

Q ss_pred             EEEEE-cCCCchHHHHHHHHhh
Q 042938           13 VVIFS-KSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~   33 (106)
                      |++|+ .+|||.|.+....|.+
T Consensus        32 vl~f~~~~~c~~C~~~~~~l~~   53 (149)
T cd03018          32 VLVFFPLAFTPVCTKELCALRD   53 (149)
T ss_pred             EEEEeCCCCCccHHHHHHHHHH
Confidence            34454 7899999866554433

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=91.29  E-value=0.46  Score=32.20  Aligned_cols=31  Identities=6%  Similarity=-0.059  Sum_probs=19.3

Q ss_pred             EEEcCCCchHHHHHHHH-------hhcCCCceEEEccc
Q 042938           15 IFSKSECCICFSIQTLI-------CGFGANPTVYELDQ   45 (106)
Q Consensus        15 vf~~~~Cp~C~~~~~~L-------~~~~v~~~~v~vd~   45 (106)
                      .|..++||.|..-..-|       .+.|+.+--+.+|.
T Consensus        32 ~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~   69 (203)
T cd03016          32 SHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS   69 (203)
T ss_pred             EecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            36778999998644333       44566655555554

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=91.25  E-value=0.22  Score=36.39  Aligned_cols=33  Identities=9%  Similarity=0.264  Sum_probs=26.5

Q ss_pred             hHHHhhhhCCCEEE--EEcCCCchHHHHHHHHhhc
Q 042938            2 DMVTRMVNEKPVVI--FSKSECCICFSIQTLICGF   34 (106)
Q Consensus         2 ~~~~~~~~~~~v~v--f~~~~Cp~C~~~~~~L~~~   34 (106)
                      +.+..++..+.+++  |+.+|||+++..+.++.+.
T Consensus         4 ~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EA   38 (375)
T KOG0912|consen    4 ENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEA   38 (375)
T ss_pred             ccHHHhhccceEEeeeeehhhchHHHHHhHHHHHH
Confidence            34567777777654  8999999999999999765

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=91.24  E-value=0.62  Score=30.51  Aligned_cols=23  Identities=22%  Similarity=0.193  Sum_probs=14.6

Q ss_pred             CCEEE-EE-cCCCchHHHHHHHHhh
Q 042938           11 KPVVI-FS-KSECCICFSIQTLICG   33 (106)
Q Consensus        11 ~~v~v-f~-~~~Cp~C~~~~~~L~~   33 (106)
                      +.++| |+ .++||.|......|.+
T Consensus        30 k~vvl~F~~~~~c~~C~~~l~~l~~   54 (173)
T cd03015          30 KWVVLFFYPLDFTFVCPTEIIAFSD   54 (173)
T ss_pred             CEEEEEEECCCCCCcCHHHHHHHHH
Confidence            34444 44 6899999976555533

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=91.16  E-value=0.93  Score=28.87  Aligned_cols=54  Identities=11%  Similarity=-0.009  Sum_probs=25.9

Q ss_pred             CCCEE-EEEc-CCCchHHHHHHHH-------hhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE
Q 042938           10 EKPVV-IFSK-SECCICFSIQTLI-------CGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV   68 (106)
Q Consensus        10 ~~~v~-vf~~-~~Cp~C~~~~~~L-------~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i   68 (106)
                      .+.++ .|+. .+||.|......|       .+.++.+--+.+|   ....+++++++.+  .++|.+
T Consensus        30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d---~~~~~~~~~~~~~--~~~~~l   92 (154)
T PRK09437         30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD---KPEKLSRFAEKEL--LNFTLL   92 (154)
T ss_pred             CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC---CHHHHHHHHHHhC--CCCeEE
Confidence            34444 4443 4799997543333       3334444333333   2244555555443  356644

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.80  E-value=0.4  Score=35.55  Aligned_cols=58  Identities=12%  Similarity=0.086  Sum_probs=34.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcC----CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFG----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ   72 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g   72 (106)
                      ..-++.|..|||++|.+....+.+..    -....-.||.....    +...+ .+...+|++  |-.|
T Consensus        48 ~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~----~~~~~-y~i~gfPtl~~f~~~  111 (383)
T KOG0191|consen   48 SPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHK----DLCEK-YGIQGFPTLKVFRPG  111 (383)
T ss_pred             CceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhH----HHHHh-cCCccCcEEEEEcCC
Confidence            34588899999999998877766442    22334445543332    23333 334778887  4455

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=90.71  E-value=0.65  Score=29.52  Aligned_cols=24  Identities=29%  Similarity=0.483  Sum_probs=17.8

Q ss_pred             CCCCccEEEECCeEeecchHHHhH
Q 042938           61 CQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        61 ~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +...+|++||||+.+.|..++.++
T Consensus       133 ~i~~tPt~~inG~~~~~~~~~~~l  156 (162)
T PF13462_consen  133 GITGTPTFFINGKYVVGPYTIEEL  156 (162)
T ss_dssp             T-SSSSEEEETTCEEETTTSHHHH
T ss_pred             CCccccEEEECCEEeCCCCCHHHH
Confidence            348999999999999876554443

...

>PRK13190 putative peroxiredoxin; Provisional

Probab=90.51  E-value=0.61  Score=31.61  Aligned_cols=16  Identities=6%  Similarity=0.017  Sum_probs=11.6

Q ss_pred             EEcCCCchHHHHHHHH
Q 042938           16 FSKSECCICFSIQTLI   31 (106)
Q Consensus        16 f~~~~Cp~C~~~~~~L   31 (106)
                      |..++||.|..-...|
T Consensus        35 ~p~~~cp~C~~El~~l   50 (202)
T PRK13190         35 HPADFTPVCTTEFIAF   50 (202)
T ss_pred             EcCCCCCCCHHHHHHH
Confidence            6789999998544334

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=89.57  E-value=1.1  Score=29.34  Aligned_cols=25  Identities=16%  Similarity=0.207  Sum_probs=20.7

Q ss_pred             CCCCCccEEEECCeEeecchHHHhH
Q 042938           60 GCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        60 ~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      .+...+|++++||+.+-|.+.+..+
T Consensus       163 ~gi~gvPtfvv~g~~~~G~~~l~~~  187 (192)
T cd03022         163 RGVFGVPTFVVDGEMFWGQDRLDML  187 (192)
T ss_pred             cCCCcCCeEEECCeeecccccHHHH
Confidence            3458999999999999998877654

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=89.56  E-value=0.91  Score=35.35  Aligned_cols=52  Identities=13%  Similarity=0.218  Sum_probs=33.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           12 PVVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      .+.+|+.+.|++|..++++|++..     ++++.+|.+.+.+      ..++++ ...+|.+.+
T Consensus       369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~------~~~~~~-v~~~P~~~i  425 (555)
T TIGR03143       369 TLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPE------SETLPK-ITKLPTVAL  425 (555)
T ss_pred             EEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchh------hHhhcC-CCcCCEEEE
Confidence            356688899999999999998853     3444444433322      222334 356788765

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=89.30  E-value=0.78  Score=28.78  Aligned_cols=21  Identities=14%  Similarity=0.085  Sum_probs=13.9

Q ss_pred             EEEEEcCC-CchHHHHHHHHhh
Q 042938           13 VVIFSKSE-CCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~-Cp~C~~~~~~L~~   33 (106)
                      |+.|+.++ ||+|.+-...|.+
T Consensus        30 vl~f~~~~~c~~C~~e~~~l~~   51 (143)
T cd03014          30 VISVFPSIDTPVCATQTKRFNK   51 (143)
T ss_pred             EEEEEcCCCCCcCHHHHHHHHH
Confidence            44456666 7999876655543

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=89.11  E-value=1.9  Score=30.17  Aligned_cols=82  Identities=16%  Similarity=0.276  Sum_probs=52.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEE---EcccCCCchHHHHHHHHhCCCCCccE--EEECCeEeecchHHHh----
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVY---ELDQIPNGPQIERALQQLGCQPTVPA--VFIGQRLVGGPNQVMS----   83 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v---~vd~~~~~~~~~~~l~~~~~~~tvP~--ifv~g~~iGg~~~~~~----   83 (106)
                      +|..+.++-+-|...-..+.-+..+|..+   .+.....+..  ..+   +. ..+|+  |+-||+.||.|-.+.+    
T Consensus       163 ~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~gas--~~F---~~-n~lP~LliYkgGeLIgNFv~va~qlge  236 (273)
T KOG3171|consen  163 VVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTGAS--DRF---SL-NVLPTLLIYKGGELIGNFVSVAEQLGE  236 (273)
T ss_pred             EEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeeccccch--hhh---cc-cCCceEEEeeCCchhHHHHHHHHHHhh
Confidence            34466788888888887777776665433   3333222221  121   22 45666  5679999999976543    


Q ss_pred             HHHhCCchHHHHhcCce
Q 042938           84 LHVQNELGPLLVRAGAI  100 (106)
Q Consensus        84 ~~~~g~L~~~L~~~g~~  100 (106)
                      -+-.|+|...|++-|.+
T Consensus       237 dffa~dle~FL~e~gll  253 (273)
T KOG3171|consen  237 DFFAGDLESFLNEYGLL  253 (273)
T ss_pred             hhhhhhHHHHHHHcCCC
Confidence            44578899999988874

>PRK13189 peroxiredoxin; Provisional

Probab=88.85  E-value=1.1  Score=31.01  Aligned_cols=31  Identities=10%  Similarity=0.052  Sum_probs=18.1

Q ss_pred             EEEcCCCchHHHHHHH-------HhhcCCCceEEEccc
Q 042938           15 IFSKSECCICFSIQTL-------ICGFGANPTVYELDQ   45 (106)
Q Consensus        15 vf~~~~Cp~C~~~~~~-------L~~~~v~~~~v~vd~   45 (106)
                      .|..++||.|..-...       |.+.|+..--+.+|.
T Consensus        42 f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~   79 (222)
T PRK13189         42 SHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ   79 (222)
T ss_pred             EeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            3678999999853333       344455544444443

>PRK13191 putative peroxiredoxin; Provisional

Probab=88.74  E-value=1  Score=30.92  Aligned_cols=33  Identities=6%  Similarity=-0.085  Sum_probs=20.4

Q ss_pred             EEEcCCCchHHHHHHHH-------hhcCCCceEEEcccCC
Q 042938           15 IFSKSECCICFSIQTLI-------CGFGANPTVYELDQIP   47 (106)
Q Consensus        15 vf~~~~Cp~C~~~~~~L-------~~~~v~~~~v~vd~~~   47 (106)
                      .|..++||.|..-...|       .+.|+.+--+.+|...
T Consensus        40 f~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~   79 (215)
T PRK13191         40 SHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNI   79 (215)
T ss_pred             EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence            46789999998644444       3446655555555443

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=86.95  E-value=1.3  Score=27.65  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=19.7

Q ss_pred             CCCCccEEEECCeEeecchHHHhH
Q 042938           61 CQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        61 ~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +...+|+++++|+.+-|..+...+
T Consensus       126 gi~gtPt~~v~g~~~~G~~~~~~l  149 (154)
T cd03023         126 GITGTPAFIIGDTVIPGAVPADTL  149 (154)
T ss_pred             CCCcCCeEEECCEEecCCCCHHHH
Confidence            457899999999999998766554

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=86.50  E-value=1.5  Score=29.53  Aligned_cols=17  Identities=18%  Similarity=0.127  Sum_probs=11.5

Q ss_pred             CEEE-EE-cCCCchHHHHH
Q 042938           12 PVVI-FS-KSECCICFSIQ   28 (106)
Q Consensus        12 ~v~v-f~-~~~Cp~C~~~~   28 (106)
                      .+++ |+ .++||.|..-.
T Consensus        33 ~vvL~F~P~~~~p~C~~el   51 (187)
T PRK10382         33 WSVFFFYPADFTFVCPTEL   51 (187)
T ss_pred             eEEEEEECCCCCCcCHHHH
Confidence            4444 45 79999998643

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=86.25  E-value=3.9  Score=27.45  Aligned_cols=60  Identities=12%  Similarity=0.143  Sum_probs=31.4

Q ss_pred             EEEEEcCCCchHHHHH---HHHhhcC-CCceEEEc--cc----C-CCchHHHHHHHHhCCCCCccEE---EECCe
Q 042938           13 VVIFSKSECCICFSIQ---TLICGFG-ANPTVYEL--DQ----I-PNGPQIERALQQLGCQPTVPAV---FIGQR   73 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~---~~L~~~~-v~~~~v~v--d~----~-~~~~~~~~~l~~~~~~~tvP~i---fv~g~   73 (106)
                      +++|+.++|++|....   ++.++++ -.+..+-+  ++    . .+..+++++++...+ .++|.+   -++|.
T Consensus        29 LVvf~AS~C~~~~q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g-~~Fpv~~k~dvnG~  102 (183)
T PRK10606         29 LIVNVASKCGLTPQYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG-VTFPMFSKIEVNGE  102 (183)
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccC-CCceeEEEEccCCC
Confidence            5678999999997432   2223322 22444433  32    1 223446666542233 578865   26665

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=86.07  E-value=3.4  Score=25.41  Aligned_cols=72  Identities=21%  Similarity=0.287  Sum_probs=38.5

Q ss_pred             HHHhhhh---CCCEEEEEcCC-CchHHHHHHHHhhc----C--CCceEEEcccCCC-chHHHHHHHHhCCCCCccEE--E
Q 042938            3 MVTRMVN---EKPVVIFSKSE-CCICFSIQTLICGF----G--ANPTVYELDQIPN-GPQIERALQQLGCQPTVPAV--F   69 (106)
Q Consensus         3 ~~~~~~~---~~~v~vf~~~~-Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~-~~~~~~~l~~~~~~~tvP~i--f   69 (106)
                      .+.+++.   ..+++||=-++ ||-+..+.+-|++.    .  +++-++||-..-. ...+.+.   ++..-.-||+  +
T Consensus         9 ql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~---~~V~HeSPQ~ili   85 (105)
T PF11009_consen    9 QLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAED---FGVKHESPQVILI   85 (105)
T ss_dssp             HHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHH---HT----SSEEEEE
T ss_pred             HHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHH---hCCCcCCCcEEEE
Confidence            3445554   45677776555 99999888777543    2  7788888765422 2233333   3554566776  4


Q ss_pred             ECCeEeec
Q 042938           70 IGQRLVGG   77 (106)
Q Consensus        70 v~g~~iGg   77 (106)
                      -||+.+-.
T Consensus        86 ~~g~~v~~   93 (105)
T PF11009_consen   86 KNGKVVWH   93 (105)
T ss_dssp             ETTEEEEE
T ss_pred             ECCEEEEE
Confidence            68887643

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>COG3340 PepE Peptidase E [Amino acid transport and metabolism]

Probab=85.97  E-value=5.7  Score=27.67  Aligned_cols=73  Identities=15%  Similarity=0.288  Sum_probs=44.8

Q ss_pred             CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCchHHHHh--
Q 042938           19 SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVR--   96 (106)
Q Consensus        19 ~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L~~~L~~--   96 (106)
                      ++-+|-.+++..|.++|.....+++...+. +.+...|      ...=.|+|+|   |..-.+...-++-.|.+.|++  
T Consensus        46 ~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~-~~Ie~~l------~~~d~IyVgG---GNTF~LL~~lke~gld~iIr~~v  115 (224)
T COG3340          46 EDDFYVEKVRNALAKLGLEVSELHLSKPPL-AAIENKL------MKADIIYVGG---GNTFNLLQELKETGLDDIIRERV  115 (224)
T ss_pred             chHHHHHHHHHHHHHcCCeeeeeeccCCCH-HHHHHhh------hhccEEEECC---chHHHHHHHHHHhCcHHHHHHHH
Confidence            567899999999999999999888877554 3333333      2233566665   222244444444445555544  


Q ss_pred             -cCcee
Q 042938           97 -AGAIW  101 (106)
Q Consensus        97 -~g~~~  101 (106)
                       .|.++
T Consensus       116 k~G~~Y  121 (224)
T COG3340         116 KAGTPY  121 (224)
T ss_pred             HcCCce
Confidence             45544

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=85.97  E-value=1.7  Score=32.20  Aligned_cols=25  Identities=16%  Similarity=0.141  Sum_probs=19.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhc
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ...++.|+.|||++|++....+.+.
T Consensus       163 ~~~lv~f~aPwc~~ck~l~~~~~~~  187 (383)
T KOG0191|consen  163 ADWLVEFYAPWCGHCKKLAPEWEKL  187 (383)
T ss_pred             cceEEEEeccccHHhhhcChHHHHH
Confidence            3458889999999999886666554

>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria

Probab=85.37  E-value=1.5  Score=27.27  Aligned_cols=50  Identities=16%  Similarity=0.335  Sum_probs=28.9

Q ss_pred             CchHHHHHHHHhhcCCCceEEE---cccCCCchHHHHHHHHhCCCCCccEEEECC
Q 042938           21 CCICFSIQTLICGFGANPTVYE---LDQIPNGPQIERALQQLGCQPTVPAVFIGQ   72 (106)
Q Consensus        21 Cp~C~~~~~~L~~~~v~~~~v~---vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g   72 (106)
                      ||+|..+.-+|.....--..+|   |+-.-=...+.+.+.+  ...+.|+++.++
T Consensus        24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE--~~QslPvLVL~~   76 (112)
T PF11287_consen   24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGE--ANQSLPVLVLAD   76 (112)
T ss_pred             CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhCh--hccCCCEEEeCC
Confidence            9999999999988753222222   2221111223334322  246899988766

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.01  E-value=1.2  Score=31.16  Aligned_cols=72  Identities=8%  Similarity=0.147  Sum_probs=46.6

Q ss_pred             hHHHhhhhCCC----EEEEEcCCCchHHHHHHHHhhcC-------CCceEEEcccCCCchHHHHHH-HHhCCCCCccEE-
Q 042938            2 DMVTRMVNEKP----VVIFSKSECCICFSIQTLICGFG-------ANPTVYELDQIPNGPQIERAL-QQLGCQPTVPAV-   68 (106)
Q Consensus         2 ~~~~~~~~~~~----v~vf~~~~Cp~C~~~~~~L~~~~-------v~~~~v~vd~~~~~~~~~~~l-~~~~~~~tvP~i-   68 (106)
                      +...+....++    ++-|...|.|.|.+....+.++.       ..|-.+||..-++..+  ++- ...++.++.|++ 
T Consensus       133 q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~--kfris~s~~srQLPT~i  210 (265)
T KOG0914|consen  133 QLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAA--KFRISLSPGSRQLPTYI  210 (265)
T ss_pred             hhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHH--heeeccCcccccCCeEE
Confidence            34444454444    55678899999999988887764       4566799998877544  121 112456788875 


Q ss_pred             -EECCeEe
Q 042938           69 -FIGQRLV   75 (106)
Q Consensus        69 -fv~g~~i   75 (106)
                       |-+|+.+
T Consensus       211 lFq~gkE~  218 (265)
T KOG0914|consen  211 LFQKGKEV  218 (265)
T ss_pred             EEccchhh
Confidence             5566544

>KOG3414 consensus Component of the U4/U6

Probab=84.84  E-value=3.3  Score=26.53  Aligned_cols=66  Identities=14%  Similarity=0.325  Sum_probs=38.9

Q ss_pred             HHHhhhhCC--CEEE--EEcCCCchHHHHHHHHhhcCCC------ceEEEcccCCCchHHHHHHHHhCCCCCccE--EEE
Q 042938            3 MVTRMVNEK--PVVI--FSKSECCICFSIQTLICGFGAN------PTVYELDQIPNGPQIERALQQLGCQPTVPA--VFI   70 (106)
Q Consensus         3 ~~~~~~~~~--~v~v--f~~~~Cp~C~~~~~~L~~~~v~------~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~--ifv   70 (106)
                      .+.++|...  ++++  |+.++-|.|.+.-.+|.+....      .-.+|+|+-++..+      -+.- ...|.  .|.
T Consensus        13 ~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~------~~~l-~~p~tvmfFf   85 (142)
T KOG3414|consen   13 EVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVK------MYEL-YDPPTVMFFF   85 (142)
T ss_pred             HHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhh------hhcc-cCCceEEEEE
Confidence            355555433  3333  9999999999999999775322      23457775444332      2222 33343  477


Q ss_pred             CCeEe
Q 042938           71 GQRLV   75 (106)
Q Consensus        71 ~g~~i   75 (106)
                      +++++
T Consensus        86 n~kHm   90 (142)
T KOG3414|consen   86 NNKHM   90 (142)
T ss_pred             cCceE
Confidence            77665

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=84.73  E-value=6.8  Score=23.84  Aligned_cols=61  Identities=15%  Similarity=0.086  Sum_probs=36.4

Q ss_pred             HHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCcc-EEEEC
Q 042938            4 VTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVP-AVFIG   71 (106)
Q Consensus         4 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP-~ifv~   71 (106)
                      +.++-+...+.+++-+....-..+++++++.+++|..+.+|....      ....++ ...+| .+++|
T Consensus        47 l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~------~~~~~~-v~~~P~~~~ld  108 (127)
T cd03010          47 LMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGR------VGIDLG-VYGVPETFLID  108 (127)
T ss_pred             HHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcch------HHHhcC-CCCCCeEEEEC
Confidence            334434444666555544555677889999999887666664322      222234 46789 56675

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=84.72  E-value=4  Score=28.03  Aligned_cols=92  Identities=16%  Similarity=0.175  Sum_probs=50.8

Q ss_pred             HHhhhhCCCEEE-EEcCCCchH---HHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe---E
Q 042938            4 VTRMVNEKPVVI-FSKSECCIC---FSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR---L   74 (106)
Q Consensus         4 ~~~~~~~~~v~v-f~~~~Cp~C---~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~---~   74 (106)
                      +..-.++.+|++ |+.+.---|   .+=...|....++-..+-|+....+     +|...-....+|.|  |.||.   +
T Consensus        78 ~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~P-----Flv~kL~IkVLP~v~l~k~g~~~D~  152 (211)
T KOG1672|consen   78 FEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAP-----FLVTKLNIKVLPTVALFKNGKTVDY  152 (211)
T ss_pred             HHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCc-----eeeeeeeeeEeeeEEEEEcCEEEEE
Confidence            333334555544 899885555   4556677777766555544443221     22222223778876  78885   5


Q ss_pred             eecchHHHh--HHHhCCchHHHHhcCce
Q 042938           75 VGGPNQVMS--LHVQNELGPLLVRAGAI  100 (106)
Q Consensus        75 iGg~~~~~~--~~~~g~L~~~L~~~g~~  100 (106)
                      |.||+++=.  -.....|+..|...|++
T Consensus       153 iVGF~dLGnkDdF~te~LE~rL~~S~vi  180 (211)
T KOG1672|consen  153 VVGFTDLGNKDDFTTETLENRLAKSGVI  180 (211)
T ss_pred             EeeHhhcCCCCcCcHHHHHHHHhhccce
Confidence            667766521  12333566677666653

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=84.29  E-value=1.3  Score=30.08  Aligned_cols=20  Identities=20%  Similarity=0.313  Sum_probs=15.9

Q ss_pred             CCCCccEEEECCeEeecchH
Q 042938           61 CQPTVPAVFIGQRLVGGPNQ   80 (106)
Q Consensus        61 ~~~tvP~ifv~g~~iGg~~~   80 (106)
                      +...+|+++|||+++-+...
T Consensus       164 gI~gtPtfiInGky~v~~~~  183 (207)
T PRK10954        164 QLRGVPAMFVNGKYMVNNQG  183 (207)
T ss_pred             CCCCCCEEEECCEEEEcccc
Confidence            45899999999998766544

>PRK15000 peroxidase; Provisional

Probab=84.22  E-value=3.7  Score=27.82  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=12.9

Q ss_pred             CCCEEEEEc--CCCchHHHHHHHH
Q 042938           10 EKPVVIFSK--SECCICFSIQTLI   31 (106)
Q Consensus        10 ~~~v~vf~~--~~Cp~C~~~~~~L   31 (106)
                      .+.+++|.-  .+||.|..-..-|
T Consensus        34 gk~vvL~F~p~~~t~vC~~El~~l   57 (200)
T PRK15000         34 GKTTVLFFWPMDFTFVCPSELIAF   57 (200)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHH
Confidence            344555444  4799998644434

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=83.74  E-value=0.47  Score=37.29  Aligned_cols=59  Identities=15%  Similarity=0.157  Sum_probs=35.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCC----ceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGAN----PTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~----~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      .++=|..+||++|++....+++....    ...+-|...+.+++.-..+-+-.+.+.+|.++-
T Consensus        60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlry  122 (606)
T KOG1731|consen   60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRY  122 (606)
T ss_pred             HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeee
Confidence            46668889999999999888776432    223333333333332223333344588888843

>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function

Probab=83.57  E-value=4.1  Score=25.69  Aligned_cols=47  Identities=21%  Similarity=0.340  Sum_probs=29.0

Q ss_pred             CCCchHH-----------HHHHHHhhcCCCce--EEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEe
Q 042938           19 SECCICF-----------SIQTLICGFGANPT--VYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV   75 (106)
Q Consensus        19 ~~Cp~C~-----------~~~~~L~~~~v~~~--~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i   75 (106)
                      .+|+.|.           +++..|..+|+...  .+.++..+       ...+   .-+.|.|.+||+.|
T Consensus        13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~-------~~~~---~~~S~~I~inG~pi   72 (120)
T PF10865_consen   13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEE-------FARQ---PLESPTIRINGRPI   72 (120)
T ss_pred             CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHH-------Hhhc---ccCCCeeeECCEeh
Confidence            3799997           34455667787654  44444321       1111   15789999999976

>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]

Probab=83.48  E-value=4.7  Score=26.62  Aligned_cols=72  Identities=14%  Similarity=0.214  Sum_probs=51.1

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh---CC-------------------CCCccEE--E
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL---GC-------------------QPTVPAV--F   69 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~---~~-------------------~~tvP~i--f   69 (106)
                      ++=|++.-+.-+++..+|++.|++|+..-++.+-..+.+.++.+..   +.                   ..++|+|  -
T Consensus         8 IMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGVP   87 (162)
T COG0041           8 IMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGVP   87 (162)
T ss_pred             EecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEecc
Confidence            3345566788899999999999999998888887776666665432   11                   1455665  4


Q ss_pred             ECCeEeecchHHHhHH
Q 042938           70 IGQRLVGGPNQVMSLH   85 (106)
Q Consensus        70 v~g~~iGg~~~~~~~~   85 (106)
                      +..+.++|.|.+.+..
T Consensus        88 v~s~~L~GlDSL~SiV  103 (162)
T COG0041          88 VQSKALSGLDSLLSIV  103 (162)
T ss_pred             CccccccchHHHHHHh
Confidence            5667788888776543

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=83.46  E-value=3.4  Score=27.00  Aligned_cols=46  Identities=13%  Similarity=-0.058  Sum_probs=24.0

Q ss_pred             EEEEEcCC-CchHHHHHHHHhhcC---CCceEEEcccCCCchHHHHHHHHh
Q 042938           13 VVIFSKSE-CCICFSIQTLICGFG---ANPTVYELDQIPNGPQIERALQQL   59 (106)
Q Consensus        13 v~vf~~~~-Cp~C~~~~~~L~~~~---v~~~~v~vd~~~~~~~~~~~l~~~   59 (106)
                      |+.|+.+| ||.|.+-..-|.+..   -.+..+-|..++ ....++++...
T Consensus        48 vl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~-~~~~~~f~~~~   97 (167)
T PRK00522         48 VLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADL-PFAQKRFCGAE   97 (167)
T ss_pred             EEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCC-HHHHHHHHHhC
Confidence            55677777 999987655554321   134444444332 22344455443

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=83.22  E-value=3.4  Score=29.44  Aligned_cols=37  Identities=11%  Similarity=0.011  Sum_probs=20.6

Q ss_pred             hCCCEEEE--EcCCCchHHHHHH-------HHhhcCCCceEEEccc
Q 042938            9 NEKPVVIF--SKSECCICFSIQT-------LICGFGANPTVYELDQ   45 (106)
Q Consensus         9 ~~~~v~vf--~~~~Cp~C~~~~~-------~L~~~~v~~~~v~vd~   45 (106)
                      ....+++|  -.++||.|..-..       -+.+.|+..--+.+|.
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds  142 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS  142 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence            44455554  4689999986333       3344455544444443

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=82.63  E-value=0.37  Score=33.82  Aligned_cols=61  Identities=11%  Similarity=0.276  Sum_probs=41.2

Q ss_pred             hhhhCCCEEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE--ECCe
Q 042938            6 RMVNEKPVVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF--IGQR   73 (106)
Q Consensus         6 ~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if--v~g~   73 (106)
                      +++...-++.|..||||.|...+..|.+.       ++...++|+..++-..-      ++. ....|+|+  .||+
T Consensus        36 ~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsG------RF~-vtaLptIYHvkDGe  105 (248)
T KOG0913|consen   36 ELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSG------RFL-VTALPTIYHVKDGE  105 (248)
T ss_pred             hhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccce------eeE-EEecceEEEeeccc
Confidence            34444446778999999999999888664       56677888887775321      111 24578885  5664

>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []

Probab=81.41  E-value=1.4  Score=28.91  Aligned_cols=33  Identities=9%  Similarity=0.227  Sum_probs=22.4

Q ss_pred             CEEEEEcCCCchHHHHHHHH----hhc-CCCceEEEcc
Q 042938           12 PVVIFSKSECCICFSIQTLI----CGF-GANPTVYELD   44 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L----~~~-~v~~~~v~vd   44 (106)
                      +|++|+...||||-.+...|    ... +++++..-+.
T Consensus         1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~   38 (193)
T PF01323_consen    1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP   38 (193)
T ss_dssp             EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence            37899999999997665444    445 6665554443

The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=80.97  E-value=12  Score=23.99  Aligned_cols=51  Identities=18%  Similarity=0.089  Sum_probs=30.9

Q ss_pred             CchHHHHHHHHhh----cC---CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecc
Q 042938           21 CCICFSIQTLICG----FG---ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGP   78 (106)
Q Consensus        21 Cp~C~~~~~~L~~----~~---v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~   78 (106)
                      +|.+..+.-+|.+    ++   +.+-.+|+|.+++       +....+..++|++  |-||+.+|..
T Consensus        48 ~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~-------LA~~fgV~siPTLl~FkdGk~v~~i  107 (132)
T PRK11509         48 TPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEA-------IGDRFGVFRFPATLVFTGGNYRGVL  107 (132)
T ss_pred             CCccccHHHHHHHHHHHhcCCceEEEEEECCCCHH-------HHHHcCCccCCEEEEEECCEEEEEE
Confidence            7777766655544    33   3355566665543       2223445889986  7899888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
3fz9_A	112	Crystal Structure Of Poplar Glutaredoxin S12 In Com		2e-15
2e7p_A	116	Crystal Structure Of The Holo Form Of Glutaredoxin		5e-15
1z7p_A	117	Solution Structure Of Reduced Glutaredoxin C1 From		6e-15
3rhb_A	113	Crystal Structure Of The Apo Form Of Glutaredoxin C		3e-13
2fls_A	132	Crystal Structure Of Human Glutaredoxin 2 Complexed		4e-10
2ht9_A	146	The Structure Of Dimeric Human Glutaredoxin 2 Lengt		4e-10
2cq9_A	130	Solution Structure Of Rsgi Ruh-044, An N-Terminal D		4e-10
3h8q_A	114	Crystal Structure Of Glutaredoxin Domain Of Human T		5e-09
3d4m_A	109	Glutaredoxin 2 Oxidized Structure Length = 109		2e-07
3ctf_A	129	Crystal Structure Of Oxidized Grx2 Length = 129		3e-07
2x8c_A	598	Thioredoxin Glutathione Reductase From Schistosoma		3e-07
3h4k_A	598	Crystal Structure Of The Wild Type Thioredoxin Glut		3e-07
2v6o_A	596	Structure Of Schistosoma Mansoni Thioredoxin-Glutat		3e-07
3d5j_A	112	Structure Of Yeast Grx2-C30s Mutant With Glutathion		6e-07
1kte_A	105	Crystal Structure Of Thioltransferase At 2.2 Angstr		6e-06
3l4n_A	127	Crystal Structure Of Yeast Monothiol Glutaredoxin G		8e-05
3gx8_A	121	Structural And Biochemical Characterization Of Yeas		9e-05
2hze_A	114	Crystal Structures Of A Poxviral Glutaredoxin In Th		2e-04
1jhb_A	106	Human Glutaredoxin In Fully Reduced Form, Nmr, 20 S		3e-04
1b4q_A	105	Solution Structure Of Human Thioltransferase Comple		6e-04

>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex With Glutathione Length = 112

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/99 (40%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 2   DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG 60
           D V + V E PVV++SK+ C     +++L      +P V ELD++   GPQI++ L++L 
Sbjct: 9   DAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLT 68
Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGA 99
            Q TVP VFIG + +GG    + L+ + EL PLL  A A
Sbjct: 69  GQHTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANA 107

>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From Populus Tremula X Tremuloides Length = 116

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 58/99 (58%)
Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           +     + +  PVV+FSK+ C  C  ++ L+   GA+  V ELD++ +G Q++ AL    
Sbjct: 10  LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT 69
Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGA 99
            + TVP VFIG + +GG + V+  H +NEL PLL  A A
Sbjct: 70  GRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 108

>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus Tremula X Tremuloides Length = 117

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 58/99 (58%)
Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           +     + +  PVV+FSK+ C  C  ++ L+   GA+  V ELD++ +G Q++ AL    
Sbjct: 11  LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT 70
Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGA 99
            + TVP VFIG + +GG + V+  H +NEL PLL  A A
Sbjct: 71  GRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 109

>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From Arabidopsis Thaliana Length = 113

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Query: 2   DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG 60
           + + + V E  VVI+SK+ C  C  ++TL    G  P V ELDQ+ P GPQ+++ L++L 
Sbjct: 10  ESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLT 69
Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGA 99
            Q TVP VF+  + +GG    + L+ + +L  +L  A  
Sbjct: 70  GQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANG 108

>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With Glutathione Length = 132

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           ++ +   +++  VVIFSK+ C  C   + L      N  V ELD +  G Q + AL ++ 
Sbjct: 25  VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 84
Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
            + TVP +F+    +GG      LH + +L PL+
Sbjct: 85  GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 118

>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2 Length = 146

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           ++ +   +++  VVIFSK+ C  C   + L      N  V ELD +  G Q + AL ++ 
Sbjct: 39  VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 98
Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
            + TVP +F+    +GG      LH + +L PL+
Sbjct: 99  GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 132

>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain Of Glutaredoxin 2 From Human Cdna Length = 130

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           ++ +   +++  VVIFSK+ C  C   + L      N  V ELD +  G Q + AL ++ 
Sbjct: 17  VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 76
Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
            + TVP +F+    +GG      LH + +L PL+
Sbjct: 77  GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 110

>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human Thioredoxin Reductase 3 Length = 114

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 7   MVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVP 66
           ++    VVIFSKS C     ++ L    G    V ELDQ+ +G +++  L ++  Q TVP
Sbjct: 13  LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP 72
Query: 67  AVFIGQRLVGGPNQVMSLHVQNELGPLL 94
            +F+ +  VGG +Q    +    L  LL
Sbjct: 73  NIFVNKVHVGGCDQTFQAYQSGLLQKLL 100

>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure Length = 109

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 4   VTRMVNEKPVVIFSKSECCIC-FSIQTLICGFG---ANPTVYELDQIPNGPQIERALQQL 59
           V  ++ +K V + +K+ C  C  ++ TL        +   V ELD++ NG +I+ AL+++
Sbjct: 10  VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEI 69
Query: 60  GCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
             Q TVP V+I  + +GG + + +L    +L  +L
Sbjct: 70  SGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 104

>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2 Length = 129

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 4/95 (4%)
Query: 4   VTRMVNEKPVVIFSKSECCIC-FSIQTLICGFG---ANPTVYELDQIPNGPQIERALQQL 59
           V  ++ +K V + +K+ C  C  ++ TL        +   V ELD++ NG +I+ AL+++
Sbjct: 30  VKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEI 89
Query: 60  GCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
             Q TVP V+I  + +GG + + +L    +L  +L
Sbjct: 90  SGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 124

>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 6   RMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTV 65
           + V+   V++FSK+ C  C  ++ ++          ELDQ+ NG  I++ L       TV
Sbjct: 13  KTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETV 72
Query: 66  PAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
           P +F+  + +G    V+  +  +EL  ++
Sbjct: 73  PQMFVRGKFIGDSQTVLKYYSNDELAGIV 101

>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 6   RMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTV 65
           + V+   V++FSK+ C  C  ++ ++          ELDQ+ NG  I++ L       TV
Sbjct: 13  KTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETV 72
Query: 66  PAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
           P +F+  + +G    V+  +  +EL  ++
Sbjct: 73  PQMFVRGKFIGDSQTVLKYYSNDELAGIV 101

>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 6   RMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTV 65
           + V+   V++FSK+ C  C  ++ ++          ELDQ+ NG  I++ L       TV
Sbjct: 13  KTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETV 72
Query: 66  PAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
           P +F+  + +G    V+  +  +EL  ++
Sbjct: 73  PQMFVRGKFIGDSQTVLKYYSNDELAGIV 101

>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl Mixed Disulfide Length = 112

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 4   VTRMVNEKPVVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQ 57
           V  ++ +K V + +K+ C   +S  TL   F       +   V ELD++ NG +I+ AL+
Sbjct: 13  VKDLIGQKEVFVAAKTYCP--YSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALE 70
Query: 58  QLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
           ++  Q TVP V+I  + +GG + + +L    +L  +L
Sbjct: 71  EISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 107

>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom Resolution Length = 105

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 13  VVIFSKSECCICFSIQTLICGFGANPTVYELDQI---PNGPQIERALQQLGCQPTVPAVF 69
           VV+F K  C  C   Q L+        + E   I    +  +I+  LQQL    TVP VF
Sbjct: 14  VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF 73
Query: 70  IGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
           IG+  +GG   + S+H + EL   L + GA+
Sbjct: 74  IGKECIGGCTDLESMHKRGELLTRLQQVGAV 104

>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6 Length = 127

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 12 PVVIFSKSECCICFSIQTLICG---FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV 68
          P++IFSKS C      + L+     F  N  + ELD+  +G +++  ++ +  + TVP +
Sbjct: 15 PIIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNL 74
Query: 69 FIGQRLVGGPNQVMSLHVQNEL 90
           +     GG  ++  LH Q +L
Sbjct: 75 LVNGVSRGGNEEIKKLHTQGKL 96

>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast Monothiol Glutaredoxin Grx5 Length = 121

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/102 (21%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 4   VTRMVNEKPVVIFSKS-----ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQ 58
           +   +   PVV+F K      +C    +   L+   G +P  +    +   P++   +++
Sbjct: 9   IEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKE 68
Query: 59  LGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
               PT+P +++ +  +GG + + S+    EL  LL  A A+
Sbjct: 69  FSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQAL 110

>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The Oxidized And Reduced States Show Redox-Correlated Structural Changes Length = 114

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 6   RMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGP---QIERALQQLGCQ 62
           R+ N K V IF K  C  C +   ++  F      YE+  I       ++    +Q+   
Sbjct: 15  RLANNK-VTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG 73
Query: 63  PTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
            TVP +F G+  +GG + ++ +   + LG +L   G +
Sbjct: 74  KTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGVL 111

>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20 Structures Length = 106

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 13  VVIFSKSECCICFSIQTLICGFGANPTVYELDQIP---NGPQIERALQQLGCQPTVPAVF 69
           VV+F K  C  C   Q ++        + E   I    +  +I+  LQQL    TVP VF
Sbjct: 15  VVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVF 74
Query: 70  IGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
           IG+  +GG + ++SL    EL   L + GA+
Sbjct: 75  IGKDCIGGCSDLVSLQQSGELLTRLKQIGAL 105

>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With Glutathione Length = 105

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 2   DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIP---NGPQIERALQQ 58
           + V   +    VV+F K  C      Q ++        + E   I    +  +I+  LQQ
Sbjct: 3   EFVNSKIQPGKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQ 62
Query: 59  LGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
           L    TVP VFIG+  +GG + ++SL    EL   L + GA+
Sbjct: 63  LTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLTRLKQIGAL 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	2e-42
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	4e-42
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	2e-39
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	2e-39
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	4e-34
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	2e-33
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	4e-33
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	1e-26
1kte_A	105	Thioltransferase; redox-active center, electron tr	2e-26
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	4e-22
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	3e-18
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	3e-16
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	1e-13
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	8e-13
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	2e-11
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	4e-10
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	1e-04
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	4e-04
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	4e-04

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Length = 116

 Score =  133 bits (338), Expect = 2e-42
 Identities = 38/100 (38%), Positives = 58/100 (58%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           +     + +  PVV+FSK+ C  C  ++ L+   GA+  V ELD++ +G Q++ AL    
Sbjct: 10  LKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWT 69

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
            + TVP VFIG + +GG + V+  H +NEL PLL  A A 
Sbjct: 70  GRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAAT 109

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Length = 146

 Score =  134 bits (339), Expect = 4e-42
 Identities = 29/100 (29%), Positives = 49/100 (49%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           ++ +   +++  VVIFSK+ C  C   + L      N  V ELD +  G Q + AL ++ 
Sbjct: 39  VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 98

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
            + TVP +F+    +GG      LH + +L PL+ +    
Sbjct: 99  GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLK 138

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score =  127 bits (320), Expect = 2e-39
 Identities = 29/100 (29%), Positives = 49/100 (49%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG 60
           ++ +   +++  VVIFSK+ C  C   + L      N  V ELD +  G Q + AL ++ 
Sbjct: 17  VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 76

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
            + TVP +F+    +GG      LH + +L PL+ +    
Sbjct: 77  GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLK 116

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Length = 113

 Score =  126 bits (318), Expect = 2e-39
 Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 1/100 (1%)

Query: 2   DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG 60
           + + + V E  VVI+SK+ C  C  ++TL    G  P V ELDQ+ P GPQ+++ L++L 
Sbjct: 10  ESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLT 69

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
            Q TVP VF+  + +GG    + L+ + +L  +L  A   
Sbjct: 70  GQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANGK 109

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} Length = 127

 Score =  113 bits (284), Expect = 4e-34
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 4   VTRMVNEKPVVIFSKSECCICFSIQTLICG---FGANPTVYELDQIPNGPQIERALQQLG 60
            + +++  P++IFSKS C     ++ L+     F  N  + ELD+  +G +++  ++ + 
Sbjct: 7   YSLILDLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVT 66

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGA 99
            + TVP + +     GG  ++  LH Q +L   L     
Sbjct: 67  GRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQVWSD 105

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} Length = 114

 Score =  111 bits (279), Expect = 2e-33
 Identities = 30/99 (30%), Positives = 47/99 (47%)

Query: 2   DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC 61
             +  ++    VVIFSKS C     ++ L    G    V ELDQ+ +G +++  L ++  
Sbjct: 8   RHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITN 67

Query: 62  QPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
           Q TVP +F+ +  VGG +Q    +    L  LL    A 
Sbjct: 68  QKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQEDLAY 106

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* Length = 129

 Score =  110 bits (278), Expect = 4e-33
 Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 4/98 (4%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFS-IQTLICGFG---ANPTVYELDQIPNGPQIERAL 56
           +  V  ++ +K V + +K+ C  C + + TL        +   V ELD++ NG +I+ AL
Sbjct: 27  VAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDAL 86

Query: 57  QQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
           +++  Q TVP V+I  + +GG + + +L    +L  +L
Sbjct: 87  EEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 124

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Length = 118

 Score = 93.9 bits (234), Expect = 1e-26
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFG----ANPTVYELDQIPNGPQIERAL 56
           +  V  ++ E  + + SK+ C  C +    +        +   V +L+ +  G  I+ AL
Sbjct: 15  IKHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAAL 74

Query: 57  QQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGA 99
            ++  Q TVP ++I  + +GG + +  L    EL  LL    A
Sbjct: 75  YEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEPILA 117

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Length = 105

 Score = 93.4 bits (233), Expect = 2e-26
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 4   VTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVY---ELDQIPNGPQIERALQQLG 60
           V   +    VV+F K  C  C   Q L+        +    ++    +  +I+  LQQL 
Sbjct: 5   VNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLT 64

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
              TVP VFIG+  +GG   + S+H + EL   L + GA+
Sbjct: 65  GARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQVGAV 104

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Length = 114

 Score = 82.3 bits (204), Expect = 4e-22
 Identities = 21/102 (20%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 2   DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVY---ELDQIPNGPQIERALQQ 58
           + V + +    V IF K  C  C +   ++  F      Y   ++ +     ++    +Q
Sbjct: 10  EFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQ 69

Query: 59  LGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
           +    TVP +F G+  +GG + ++ +   + LG +L   G +
Sbjct: 70  ITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGVL 111

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria} Length = 362

 Score = 76.7 bits (188), Expect = 3e-18
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 1   MDMVTRMVNEKPVVIFSKSECCICFSIQTLICGFG----ANPTVYELDQIPNGPQIERAL 56
           +  V  ++ E  + + SK+ C    +    +        +   V +L+ +  G  I+ AL
Sbjct: 251 IKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAAL 310

Query: 57  QQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAIW 101
            ++  Q TVP ++I  + +GG + +  L    EL  LL    A  
Sbjct: 311 YEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEPILANL 355

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 71.6 bits (176), Expect = 3e-16
 Identities = 23/93 (24%), Positives = 45/93 (48%)

Query: 2   DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC 61
             + + V+   V++FSK+ C  C  ++ ++          ELDQ+ NG  I++ L     
Sbjct: 9   QWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSK 68

Query: 62  QPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
             TVP +F+  + +G    V+  +  +EL  ++
Sbjct: 69  IETVPQMFVRGKFIGDSQTVLKYYSNDELAGIV 101

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92

 Score = 60.3 bits (147), Expect = 1e-13
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 11  KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70
             V+I+++  C  C   + L+   GA     +       P++   +Q+   + T P +FI
Sbjct: 6   VDVIIYTRPGCPYCARAKALLARKGAEFNEIDAS---ATPELRAEMQERSGRNTFPQIFI 62

Query: 71  GQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
           G   VGG + + +L  + +L  LL     I
Sbjct: 63  GSVHVGGCDDLYALEDEGKLDSLLKTGKLI 92

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99

 Score = 58.0 bits (141), Expect = 8e-13
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70
            + I++ S C  C     L+   G     Y +D   +    E    +   + ++P +FI
Sbjct: 16 AKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDG--DNEAREAMAARANGKRSLPQIFI 73

Query: 71 GQRLVGGPNQVMSLHVQNELGPLL 94
            + +GG + + +L    +L PLL
Sbjct: 74 DDQHIGGCDDIYALDGAGKLDPLL 97

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} Length = 89

 Score = 54.5 bits (132), Expect = 2e-11
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI 70
          K ++++++  C  C   + L+   G   T  +          +  +Q+   + T P +FI
Sbjct: 6  KEIILYTRPNCPYCKRARDLLDKKGVKYTDIDAS----TSLRQEMVQRANGRNTFPQIFI 61

Query: 71 GQRLVGGPNQVMSLHVQNELGPLL 94
          G   VGG + + +L  + +L  LL
Sbjct: 62 GDYHVGGCDDLYALENKGKLDSLL 85

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82

 Score = 51.0 bits (123), Expect = 4e-10
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72
          V I++K  C  C   + L+   G +     +D           + +   + TVP +FI  
Sbjct: 3  VEIYTKETCPYCHRAKALLSSKGVSFQELPID---GNAAKREEMIKRSGRTTVPQIFIDA 59

Query: 73 RLVGGPNQVMSLHVQNELGPLL 94
          + +GG + + +L  +  L PLL
Sbjct: 60 QHIGGYDDLYALDARGGLDPLL 81

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A Length = 93

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 7/90 (7%)

Query: 11 KPVVIFSKSECCI------CFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPT 64
            + ++S S             +  ++ G      + ++ Q        R L     + T
Sbjct: 2  SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNP-KAT 60

Query: 65 VPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
           P +  G    G     +    Q+ L   L
Sbjct: 61 PPQIVNGNHYCGDYELFVEAVEQDTLQEFL 90

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* Length = 89

 Score = 35.3 bits (82), Expect = 4e-04
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQ----IERALQQLGCQPTVPAV 68
          V I++++ C  C   +              +D      +    + ++ + +    TVP +
Sbjct: 6  VKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQI 65

Query: 69 FIGQRLVGG 77
          FI    +GG
Sbjct: 66 FIDDEHIGG 74

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Length = 85

 Score = 35.3 bits (82), Expect = 4e-04
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVY---ELDQIPNGPQIERALQQLGCQP-TVPAV 68
           VIF +S C  C   + L          +    +D    G   E   Q+ G    TVP +
Sbjct: 3  TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI 62

Query: 69 FIGQRLVGGPNQVMSLHVQN 88
          F+ Q+ +GG     +   +N
Sbjct: 63 FVDQQHIGGYTDFAAWVKEN 82

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	100.0
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	99.98
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	99.97
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	99.97
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	99.97
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	99.97
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	99.97
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	99.97
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	99.96
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	99.96
1kte_A	105	Thioltransferase; redox-active center, electron tr	99.95
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	99.95
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	99.95
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	99.95
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	99.94
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	99.94
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	99.94
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	99.93
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	99.93
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	99.93
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	99.93
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	99.92
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.9
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	99.9
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	99.89
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.88
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	99.88
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.87
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	99.85
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.84
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	99.79
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.78
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	99.76
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.75
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	99.73
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	99.67
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.62
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.56
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.53
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.46
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	99.38
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	99.38
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	99.34
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	99.31
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.22
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.22
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.07
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.98
3rdw_A	121	Putative arsenate reductase; structural genomics,	98.97
3l78_A	120	Regulatory protein SPX; transcription, transcripti	98.95
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	98.93
3gkx_A	120	Putative ARSC family related protein; ARSC family	98.93
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.9
3fz4_A	120	Putative arsenate reductase; APC61768, structural	98.88
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	98.88
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.87
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.83
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.79
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	98.79
4hoj_A	210	REGF protein; GST, glutathione S-transferase, enzy	98.78
4g10_A	265	Glutathione S-transferase homolog; thioredoxin fol	98.73
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	98.71
3ir4_A	218	Glutaredoxin 2; glutathione, IDP00895, structural	98.7
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.69
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	98.69
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	98.68
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	98.68
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	98.67
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.66
2ahe_A	267	Chloride intracellular channel protein 4; glutathi	98.66
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	98.65
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.65
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	98.61
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	98.61
4hi7_A	228	GI20122; GST, glutathione S-transferase, enzyme fu	98.6
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	98.6
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.59
2r4v_A	247	XAP121, chloride intracellular channel protein 2;	98.59
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	98.58
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	98.58
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	98.58
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	98.57
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	98.56
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	98.56
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	98.55
1k0m_A	241	CLIC1, NCC27, chloride intracellular channel prote	98.55
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	98.54
3qav_A	243	RHO-class glutathione S-transferase; cytosol; 2.10	98.53
1yy7_A	213	SSPA, stringent starvation protein A; GST fold, tr	98.53
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	98.53
3lyk_A	216	Stringent starvation protein A homolog; structural	98.53
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.53
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.52
3vln_A	241	GSTO-1, glutathione S-transferase omega-1; GST fol	98.52
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	98.52
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.52
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	98.52
1oyj_A	231	Glutathione S-transferase; herbicide detoxificatio	98.52
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	98.52
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	98.51
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	98.51
1gwc_A	230	Glutathione S-transferase TSI-1; herbicide detoxif	98.51
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	98.51
2cz2_A	223	Maleylacetoacetate isomerase; structural genomics,	98.49
1mek_A	120	Protein disulfide isomerase; electron transport, r	98.49
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	98.49
2vo4_A	219	2,4-D inducible glutathione S-transferase; herbici	98.48
1yq1_A	208	Glutathione S-transferase; nematoda, structural ge	98.48
1axd_A	209	Glutathione S-transferase I; transferase, herbicid	98.47
3lyp_A	215	Stringent starvation protein A; structural genomic	98.47
4f03_A	253	Glutathione transferase; GST fold; 1.80A {Phaneroc	98.47
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	98.47
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	98.47
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	98.46
1v2a_A	210	Glutathione transferase GST1-6; glutathione S-tran	98.45
1e6b_A	221	Glutathione S-transferase; 1.65A {Arabidopsis thal	98.44
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.44
4glt_A	225	Glutathione S-transferase-like protein; structural	98.43
4iel_A	229	Glutathione S-transferase, N-terminal domain PROT;	98.43
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.43
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	98.42
1okt_A	211	Glutathione S-transferase; GST; 1.9A {Plasmodium f	98.42
1zl9_A	207	GST class-sigma, glutathione S-transferase 5; glut	98.42
1gnw_A	211	Glutathione S-transferase; herbicide detoxificatio	98.42
2imi_A	221	Epsilon-class glutathione S-transferase; HET: GSH;	98.42
1aw9_A	216	Glutathione S-transferase III; herbicide detoxific	98.42
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	98.41
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	98.41
2on5_A	206	Nagst-2, Na glutathione S-transferase 2; hookworm;	98.41
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.41
3ay8_A	216	Glutathione S-transferase; GST fold, GST binding,	98.41
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	98.4
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	98.4
3ic8_A	310	Uncharacterized GST-like proteinprotein; glutathio	98.4
2v6k_A	214	Maleylpyruvate isomerase; glutathione-S-transferas	98.39
3bby_A	215	Uncharacterized GST-like protein YFCF; NP_416804.1	98.39
4dej_A	231	Glutathione S-transferase related protein; transfe	98.39
2ws2_A	204	NU-class GST, glutathione S-transferase; parasite,	98.39
3lxz_A	229	Glutathione S-transferase family protein; structur	98.38
2on7_A	206	Nagst-1, Na glutathione S-transferase 1; hookworm;	98.38
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	98.38
3rbt_A	246	Glutathione transferase O1; glutathione S-transfer	98.38
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.37
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	98.37
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	98.36
3m3m_A	210	Glutathione S-transferase; PSI-II, structural geno	98.36
2l57_A	126	Uncharacterized protein; structural genomics, unkn	98.36
3f6d_A	219	Adgstd4-4, glutathione transferase GST1-4; HET: GT	98.36
3q18_A	239	GSTO-2, glutathione S-transferase omega-2; glutath	98.36
1pn9_A	209	GST class-delta, glutathione S-transferase 1-6; pr	98.36
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	98.35
2cvd_A	198	Glutathione-requiring prostaglandin D synthase; gl	98.35
1z9h_A	290	Membrane-associated prostaglandin E synthase-2; me	98.35
3fy7_A	250	Chloride intracellular channel protein 3; GST, glu	98.35
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	98.34
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.34
1tw9_A	206	Glutathione S-transferase 2; 1.71A {Heligmosomoide	98.34
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	98.34
3m8n_A	225	Possible glutathione S-transferase; PSI-II, struct	98.34
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.34
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.33
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	98.33
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.33
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.33
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	98.33
3vk9_A	216	Glutathione S-transferase delta; glutathione bindi	98.33
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	98.33
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	98.33
3ubk_A	242	Glutathione transferase; GSH binding; 1.95A {Lepto	98.32
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	98.32
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	98.3
1ljr_A	244	HGST T2-2, glutathione S-transferase; HET: GSH; 3.	98.3
2c3n_A	247	Glutathione S-transferase theta 1; glutathione tra	98.29
2kuc_A	130	Putative disulphide-isomerase; structural genomics	98.28
2a2r_A	210	Glutathione S-transferase P; detoxification, nitri	98.28
1k0d_A	260	URE2 protein; nitrate assimilation, structural gen	98.28
3ein_A	209	GST class-theta, glutathione S-transferase 1-1; de	98.28
1r5a_A	218	Glutathione transferase; glutathione S-transferase	98.28
3niv_A	222	Glutathione S-transferase; structural genomics, PS	98.26
3m0f_A	213	Uncharacterized protein GST_N; PSI-2, NYSGXRC, glu	98.25
2gsq_A	202	Squid GST, glutathione S-transferase; squid digest	98.25
2hnl_A	225	Glutathione S-transferase 1; prostaglandin synthas	98.25
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	97.56
4hz2_A	230	Glutathione S-transferase domain; glutathione,enzy	98.24
3ibh_A	233	GST-II, saccharomyces cerevisiae GTT2; glutathione	98.24
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.23
3r2q_A	202	Uncharacterized GST-like protein YIBF; transferase	98.23
3tou_A	226	Glutathione S-transferase protein; GSH binding sit	98.23
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.22
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	98.22
3n5o_A	235	Glutathione transferase; seattle structural genomi	98.21
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	98.21
3cbu_A	214	Probable GST-related protein; thioredoxin fold, GS	98.21
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	98.2
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	98.19
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	98.18
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	98.17
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.16
1k3y_A	221	GSTA1-1, glutathione S-transferase A1; S-hexyl glu	98.16
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	98.15
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	98.15
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	98.14
3gtu_B	224	Glutathione S-transferase; conjugation, detoxifica	98.14
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.13
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.13
1vf1_A	229	Glutathione S-transferase 3; detoxification; HET:	98.12
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	97.39
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	98.1
4id0_A	214	Glutathione S-transferase-like protein YIBF; GST,	98.1
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	98.1
1nhy_A	219	EF-1-gamma 1, elongation factor 1-gamma 1; protein	98.09
1m0u_A	249	GST2 gene product; flight muscle protein, sigma, t	98.08
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	98.08
2wb9_A	211	Glutathione transferase sigma class; thioredoxin f	98.07
1tu7_A	208	Glutathione S-transferase 2; HET: GSH; 1.50A {Onch	98.06
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.06
1b48_A	221	GST, mgsta4-4, protein (glutathione S-transferase)	98.04
3iso_A	218	Putative glutathione transferase; GST; HET: GSH; 1	98.03
4exj_A	238	Uncharacterized protein; transferase-like protein,	98.02
3ik7_A	222	Glutathione S-transferase A4; human GST A4-4, enzy	98.01
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.01
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.01
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.0
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	98.0
2qsi_A	137	Putative hydrogenase expression/formation protein;	97.99
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	97.98
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	97.98
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	97.98
2c4j_A	218	Glutathione S-transferase MU 2; glutathione transf	97.98
3gx0_A	215	GST-like protein YFCG; transferase, glutathione, g	97.97
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	97.96
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	97.96
2ycd_A	230	Glutathione S-transferase; SOIL bacteria, herbicid	97.96
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	97.95
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	97.95
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	97.95
4ikh_A	244	Glutathione S-transferase; enzyme function initiat	97.95
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	97.95
2yv7_A	260	CG10997-PA, LD46306P, CLIC; dmclic, chloride ION c	97.95
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	97.93
4hz4_A	217	Glutathione-S-transferase; enzyme function initiat	97.93
2fhe_A	216	GST, glutathione S-transferase; transferase-substr	97.93
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	97.92
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	97.9
4ecj_A	244	Glutathione S-transferase; transferase-like protei	97.9
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.89
1gsu_A	219	GST, CGSTM1-1, class-MU glutathione S-transferase;	97.88
1oe8_A	211	Glutathione S-transferase; schistosomiasis, detoxi	97.88
2yv9_A	291	Chloride intracellular channel EXC-4; chloride ION	97.87
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	97.86
1dug_A	234	Chimera of glutathione S-transferase-synthetic lin	97.85
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	97.85
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	97.84
2x64_A	207	Glutathione-S-transferase; detoxification enzyme;	97.83
3lsz_A	225	Glutathione S-transferase; xenobiotic, biodegradat	97.82
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.82
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	97.82
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.79
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	97.78
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	97.76
2pvq_A	201	Glutathione S-transferase; xenobiotics detoxificat	97.76
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	97.74
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	97.72
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.72
1n2a_A	201	Glutathione S-transferase; HET: GTS; 1.90A {Escher	97.72
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	97.71
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	97.65
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	97.65
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	97.63
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.63
3uar_A	227	Glutathione S-transferase; GSH binding site; HET:	97.63
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	97.63
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	97.62
1pmt_A	203	PMGST, GST B1-1, glutathione transferase; glutathi	97.62
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	97.61
1xg8_A	111	Hypothetical protein SA0798; structural genomics,	97.61
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	97.6
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	97.59
2lrt_A	152	Uncharacterized protein; structural genomics, thio	97.59
2dsa_A	203	Glutathione S-transferase; HET: GSH HPX; 2.10A {Bu	97.59
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	97.59
3ira_A	173	Conserved protein; methanosarcina mazei,structural	97.58
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	97.58
3c8e_A	288	YGHU, glutathione S-transferase homologue; glutath	97.56
3h1n_A	252	Probable glutathione S-transferase; APC84167, bord	97.53
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	97.51
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	97.5
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	97.49
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	97.49
4gf0_A	215	Glutathione S-transferase; GST, enzyme function in	97.48
1f2e_A	201	Glutathione S-transferase; GST complexed with glut	97.48
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	97.48
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	97.48
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	97.47
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	97.46
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	97.45
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	97.44
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	97.43
4evm_A	138	Thioredoxin family protein; structural genomics, n	97.43
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	97.4
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	97.4
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	97.39
3ppu_A	352	Glutathione-S-transferase; GST fold; HET: GSH; 2.3	97.39
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	97.39
1b8x_A	280	Protein (AML-1B); nuclear matrix targeting signal	97.31
3raz_A	151	Thioredoxin-related protein; structural genomics,	97.27
1bg5_A	254	MAB, fusion protein of alpha-Na,K-ATPase with glut	97.23
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	97.16
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	97.06
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	97.04
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	96.05
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	96.99
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	96.99
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	96.96
4gci_A	211	Glutathione S-transferase; GST, enzyme function in	96.96
3m1g_A	362	Putative glutathione S-transferase; ECM4-like subf	96.9
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	96.88
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	96.82
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	96.77
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	96.75
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	96.75
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	95.67
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	96.65
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	96.62
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	96.61
3ktb_A	106	Arsenical resistance operon trans-acting represso;	96.59
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	96.51
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	96.5
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	96.47
2fno_A	248	AGR_PAT_752P; thioredoxin fold, GST C-terminal dom	96.45
3kgk_A	110	Arsenical resistance operon trans-acting represso;	96.38
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	96.26
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	96.25
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	96.24
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	96.12
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	96.09
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	96.08
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	96.01
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	95.93
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	95.91
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	95.89
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	95.89
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	95.85
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	95.72
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	95.71
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	95.68
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	95.61
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	95.59
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	95.51
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	95.51
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	95.49
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	95.28
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	95.18
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	95.15
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	95.1
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	95.01
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	94.96
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	94.85
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	94.8
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	94.59
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	94.49
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	94.34
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	94.29
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	94.14
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	94.06
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	94.05
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	93.85
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	93.73
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	93.68
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	93.65
4g0i_A	328	Protein YQJG; glutathionyl-hydroquinone reductase,	93.52
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	93.36
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	93.15
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	93.14
3me7_A	170	Putative uncharacterized protein; electron transfe	93.12
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	93.03
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	92.97
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	92.96
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	92.96
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	92.8
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	92.7
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	92.66
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	92.6
4fqu_A	313	Putative glutathione transferase; glutathionyl-hyd	92.56
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	92.5
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	92.38
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	92.34
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	92.13
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	92.05
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	91.67
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	91.66
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	91.57
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	91.51
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	91.25
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	91.14
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	90.78
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	90.7
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	90.56
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	90.36
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	90.01
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	89.9
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	89.36
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	89.06
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	88.6
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	88.14
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	87.82
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	87.79
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	87.41
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	87.17
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	86.74
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	86.65
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	86.53
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	86.4
2ywx_A	157	Phosphoribosylaminoimidazole carboxylase catalyti;	85.13
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	84.75
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	84.36
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	84.28
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	84.08
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	83.99
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	83.9
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	83.34
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	82.51
3rg8_A	159	Phosphoribosylaminoimidazole carboxylase, PURE PR;	82.47
2imf_A	203	HCCA isomerase, 2-hydroxychromene-2-carboxylate is	82.03
3ors_A	163	N5-carboxyaminoimidazole ribonucleotide mutase; is	81.69
3kuu_A	174	Phosphoribosylaminoimidazole carboxylase catalyti	81.43
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	81.12
1fy2_A	229	Aspartyl dipeptidase; serine protease, catalytic t	80.98
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	80.76
3gl5_A	239	Putative DSBA oxidoreductase SCO1869; probable DSB	80.62
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	80.53
3fz5_A	202	Possible 2-hydroxychromene-2-carboxylate isomeras;	80.48
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	80.4

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-33  Score=176.72  Aligned_cols=104  Identities=22%  Similarity=0.302  Sum_probs=96.3

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhc---CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecc
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGF---GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGP   78 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~---~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~   78 (106)
                      +.+++++++++|+||++++||||.+++++|++.   +++|+++|||.+++..++++++.+.++.+|||+|||||++|||+
T Consensus         5 ~~~~~ii~~~~Vvvysk~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~G~~IGG~   84 (127)
T 3l4n_A            5 KEYSLILDLSPIIIFSKSTCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNGVSRGGN   84 (127)
T ss_dssp             HHHHHHHTSCSEEEEECTTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEECCCH
T ss_pred             HHHHHHHccCCEEEEEcCCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEECCEEEcCH
Confidence            468899999999999999999999999999985   79999999999988888888998887889999999999999999


Q ss_pred             hHHHhHHHhCCchHHHHhcCceeeccc
Q 042938           79 NQVMSLHVQNELGPLLVRAGAIWLWKK  105 (106)
Q Consensus        79 ~~~~~~~~~g~L~~~L~~~g~~~~~~~  105 (106)
                      |++.+++++|+|.++|+++|+.++..+
T Consensus        85 ddl~~l~~~G~L~~lL~~~g~~~~~~~  111 (127)
T 3l4n_A           85 EEIKKLHTQGKLLESLQVWSDGKFSVE  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHTCTTSCEEE
T ss_pred             HHHHHHHHCCCHHHHHHHhcCCcEEEE
Confidence            999999999999999999999776554

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=99.98  E-value=1.1e-32  Score=172.24  Aligned_cols=99  Identities=20%  Similarity=0.435  Sum_probs=90.0

Q ss_pred             hHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCC-CceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEe
Q 042938            2 DMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGA-NPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV   75 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v-~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i   75 (106)
                      +++++++++++|+||++     |.||||.+++++|+++++ +|.++|++.++   ++++++.++++++|||+|||||++|
T Consensus        11 e~i~~~i~~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~---~~r~~l~~~sg~~TvPqIFI~g~~I   87 (118)
T 2wul_A           11 EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDP---ELRQGIKDYSNWPTIPQVYLNGEFV   87 (118)
T ss_dssp             HHHHHHHHHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCH---HHHHHHHHHHTCCSSCEEEETTEEE
T ss_pred             HHHHHHHhcCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCH---HHHHHHHHhccCCCCCeEeECCEEE
Confidence            57899999999999998     469999999999999998 69999998765   4677888888889999999999999


Q ss_pred             ecchHHHhHHHhCCchHHHHhcCceeec
Q 042938           76 GGPNQVMSLHVQNELGPLLVRAGAIWLW  103 (106)
Q Consensus        76 Gg~~~~~~~~~~g~L~~~L~~~g~~~~~  103 (106)
                      ||+|++.+++++|+|.++|+++|...-+
T Consensus        88 GG~Ddl~~l~~~GeL~~lL~~~Gi~~a~  115 (118)
T 2wul_A           88 GGCDILLQMHQNGDLVEELKKLGIHSAL  115 (118)
T ss_dssp             ECHHHHHHHHHHTHHHHHHHHTTCCCTT
T ss_pred             CCHHHHHHHHHCCCHHHHHHHcCCcccc
Confidence            9999999999999999999999986543

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=99.97  E-value=6e-31  Score=165.21  Aligned_cols=97  Identities=23%  Similarity=0.479  Sum_probs=88.5

Q ss_pred             hHHHhhhhCCCEEEEEcC-----CCchHHHHHHHHhhcCCC---ceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCe
Q 042938            2 DMVTRMVNEKPVVIFSKS-----ECCICFSIQTLICGFGAN---PTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQR   73 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~-----~Cp~C~~~~~~L~~~~v~---~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~   73 (106)
                      +++++++++++|+||+++     +||||.+++++|+++|++   |+++||+.++   ++++++...++++|||+|||||+
T Consensus         7 ~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~---~~~~~l~~~sg~~tvP~vfI~g~   83 (121)
T 3gx8_A            7 KAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDP---ELREGIKEFSEWPTIPQLYVNKE   83 (121)
T ss_dssp             HHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCH---HHHHHHHHHHTCCSSCEEEETTE
T ss_pred             HHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCH---HHHHHHHHHhCCCCCCeEEECCE
Confidence            578899999999999996     999999999999999999   8889988653   46668887777899999999999


Q ss_pred             EeecchHHHhHHHhCCchHHHHhcCcee
Q 042938           74 LVGGPNQVMSLHVQNELGPLLVRAGAIW  101 (106)
Q Consensus        74 ~iGg~~~~~~~~~~g~L~~~L~~~g~~~  101 (106)
                      +|||+|++.+++++|+|.++|+++|++.
T Consensus        84 ~iGG~d~l~~l~~~G~L~~~L~~~g~~~  111 (121)
T 3gx8_A           84 FIGGCDVITSMARSGELADLLEEAQALV  111 (121)
T ss_dssp             EEESHHHHHHHHHHTHHHHHHHHTTCBC
T ss_pred             EEecHHHHHHHHHcCChHHHHHHcCCCC
Confidence            9999999999999999999999999964

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=99.97  E-value=2.1e-30  Score=160.81  Aligned_cols=95  Identities=31%  Similarity=0.494  Sum_probs=88.7

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHH
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~   81 (106)
                      +++++++++++|++|++++||+|.+++.+|+++|++|+.+|||..++..++++++.+.++.+++|+||+||++|||+|++
T Consensus         8 ~~~~~~i~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi~g~~igG~d~l   87 (114)
T 3h8q_A            8 RHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQT   87 (114)
T ss_dssp             HHHHHHHHHCSEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEETTEEEESHHHH
T ss_pred             HHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEECCEEEeCHHHH
Confidence            46889999999999999999999999999999999999999999888777878887777779999999999999999999


Q ss_pred             HhHHHhCCchHHHHh
Q 042938           82 MSLHVQNELGPLLVR   96 (106)
Q Consensus        82 ~~~~~~g~L~~~L~~   96 (106)
                      .+++++|+|.++|+.
T Consensus        88 ~~l~~~G~L~~~l~~  102 (114)
T 3h8q_A           88 FQAYQSGLLQKLLQE  102 (114)
T ss_dssp             HHHHHHTHHHHHHHS
T ss_pred             HHHHHCCCHHHHhcC
Confidence            999999999999984

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=99.97  E-value=6.9e-31  Score=162.69  Aligned_cols=95  Identities=16%  Similarity=0.386  Sum_probs=87.3

Q ss_pred             hHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938            2 DMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      +++++++++++|+||++     ++||+|.+++++|++.|++|+++||+.++   +.++.+...++.+++|+|||||++||
T Consensus         7 ~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~---~~~~~l~~~~g~~tvP~ifi~g~~iG   83 (111)
T 3zyw_A            7 LRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDE---EVRQGLKAYSSWPTYPQLYVSGELIG   83 (111)
T ss_dssp             HHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCH---HHHHHHHHHHTCCSSCEEEETTEEEE
T ss_pred             HHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCH---HHHHHHHHHHCCCCCCEEEECCEEEe
Confidence            47889999999999999     99999999999999999999999999864   45567777777899999999999999


Q ss_pred             cchHHHhHHHhCCchHHHHhcCc
Q 042938           77 GPNQVMSLHVQNELGPLLVRAGA   99 (106)
Q Consensus        77 g~~~~~~~~~~g~L~~~L~~~g~   99 (106)
                      |+|++.+++++|+|.++|++|+.
T Consensus        84 G~d~l~~l~~~G~L~~~L~~a~~  106 (111)
T 3zyw_A           84 GLDIIKELEASEELDTICPKAAE  106 (111)
T ss_dssp             CHHHHHHHHHTTCHHHHSCCCCC
T ss_pred             cHHHHHHHHHCCCHHHHHHhCcc
Confidence            99999999999999999998875

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=99.97  E-value=7.3e-31  Score=161.93  Aligned_cols=95  Identities=20%  Similarity=0.358  Sum_probs=86.7

Q ss_pred             hHHHhhhhCCCEEEEEcC-----CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938            2 DMVTRMVNEKPVVIFSKS-----ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~-----~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      +++++++++++|+||+++     +||||.+++++|+++|++|+++||+.++   +.++.+...++.+++|+|||||++||
T Consensus         9 ~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~---~~~~~l~~~~g~~tvP~ifi~g~~iG   85 (109)
T 3ipz_A            9 DTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENE---MLRQGLKEYSNWPTFPQLYIGGEFFG   85 (109)
T ss_dssp             HHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCH---HHHHHHHHHHTCSSSCEEEETTEEEE
T ss_pred             HHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCH---HHHHHHHHHHCCCCCCeEEECCEEEe
Confidence            468899999999999995     9999999999999999999999998764   35567777777899999999999999


Q ss_pred             cchHHHhHHHhCCchHHHHhcCc
Q 042938           77 GPNQVMSLHVQNELGPLLVRAGA   99 (106)
Q Consensus        77 g~~~~~~~~~~g~L~~~L~~~g~   99 (106)
                      |+|++.+++++|+|.++|++||+
T Consensus        86 G~d~l~~l~~~G~L~~~L~~a~~  108 (109)
T 3ipz_A           86 GCDITLEAFKTGELQEEVEKAMC  108 (109)
T ss_dssp             CHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCcHHHHHHHhhc
Confidence            99999999999999999999876

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=99.97  E-value=3e-30  Score=159.32  Aligned_cols=100  Identities=36%  Similarity=0.648  Sum_probs=86.9

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQ   80 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~   80 (106)
                      +++++++++++|++|++++||+|++++.+|++++++|+.+||+.+ ++..++++.+...++.+++|+||+||++|||+++
T Consensus        10 ~~~~~~i~~~~v~vy~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi~g~~igG~~~   89 (113)
T 3rhb_A           10 ESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTD   89 (113)
T ss_dssp             HHHHHHHHHSSEEEEECTTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEETTEEEESHHH
T ss_pred             HHHHHHHhcCCEEEEECCCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEECCEEEcCcHH
Confidence            467888999999999999999999999999999999999999985 3445677788887677999999999999999999


Q ss_pred             HHhHHHhCCchHHHHhcCcee
Q 042938           81 VMSLHVQNELGPLLVRAGAIW  101 (106)
Q Consensus        81 ~~~~~~~g~L~~~L~~~g~~~  101 (106)
                      +.+++++|+|.++|+++|+.+
T Consensus        90 ~~~~~~~g~L~~~l~~~~~~~  110 (113)
T 3rhb_A           90 TVKLNRKGDLELMLAEANGKN  110 (113)
T ss_dssp             HHHHHHHTHHHHHHTC-----
T ss_pred             HHHHHHcCCHHHHHHHHhhhh
Confidence            999999999999999999754

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=99.96  E-value=1.8e-29  Score=161.21  Aligned_cols=97  Identities=23%  Similarity=0.449  Sum_probs=88.4

Q ss_pred             hHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938            2 DMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      +++++++.+++|+||++     ++||+|.+++++|++++++|+++||+.++   +.++.+...++.+++|+|||||++||
T Consensus        26 ~~v~~~i~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~---~~~~~L~~~~G~~tvP~VfI~G~~iG  102 (135)
T 2wci_A           26 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNP---DIRAELPKYANWPTFPQLWVDGELVG  102 (135)
T ss_dssp             HHHHHHHHHCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCH---HHHHHHHHHHTCCSSCEEEETTEEEE
T ss_pred             HHHHHHhccCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCH---HHHHHHHHHHCCCCcCEEEECCEEEE
Confidence            56888999999999999     89999999999999999999999999764   35567777777799999999999999


Q ss_pred             cchHHHhHHHhCCchHHHHhcCcee
Q 042938           77 GPNQVMSLHVQNELGPLLVRAGAIW  101 (106)
Q Consensus        77 g~~~~~~~~~~g~L~~~L~~~g~~~  101 (106)
                      |+|++.+++++|+|.++|+++|+++
T Consensus       103 G~d~l~~l~~~G~L~~~L~~~g~~~  127 (135)
T 2wci_A          103 GCDIVIEMYQRGELQQLIKETAAKY  127 (135)
T ss_dssp             SHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHCChHHHHHHHcCCCC
Confidence            9999999999999999999999865

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=99.96  E-value=8.2e-29  Score=154.56  Aligned_cols=98  Identities=28%  Similarity=0.469  Sum_probs=89.8

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHH-HHHHhhcC---CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeec
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSI-QTLICGFG---ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGG   77 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~-~~~L~~~~---v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg   77 (106)
                      +.+++++++.+|++|++++||+|.++ +++|++.+   ++|..+||+.+++..+.++.+.+.++.+++|+||+||++|||
T Consensus        16 ~~~~~~i~~~~Vvvf~~~~Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~vfi~g~~igG   95 (118)
T 3c1r_A           16 KHVKDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGG   95 (118)
T ss_dssp             HHHHHHHHHSSEEEEECSSCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEES
T ss_pred             HHHHHHHccCcEEEEEcCCCcCHHHHHHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEEEECCEEEEc
Confidence            46788899999999999999999999 99999999   999999999988766666777776667999999999999999


Q ss_pred             chHHHhHHHhCCchHHHHhcCc
Q 042938           78 PNQVMSLHVQNELGPLLVRAGA   99 (106)
Q Consensus        78 ~~~~~~~~~~g~L~~~L~~~g~   99 (106)
                      ++++.+++++|+|.++|+++||
T Consensus        96 ~d~l~~l~~~g~L~~~L~~~g~  117 (118)
T 3c1r_A           96 NDDLQELRETGELEELLEPILA  117 (118)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCcHHHHHHHcCC
Confidence            9999999999999999999987

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=99.95  E-value=9.8e-28  Score=145.73  Aligned_cols=100  Identities=30%  Similarity=0.461  Sum_probs=90.5

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCC---ceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecc
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGAN---PTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGP   78 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~---~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~   78 (106)
                      +.+++++++++|++|++++||+|++++.+|++.+++   |..+||+.+++..+.++.+....+..++|++|++|+++||+
T Consensus         3 ~~~~~~i~~~~v~~f~~~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~~g~~i~g~   82 (105)
T 1kte_A            3 AFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGC   82 (105)
T ss_dssp             HHHHHHCCTTCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETTEEEESH
T ss_pred             hHHHhhcccCCEEEEEcCCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEECCEEEecc
Confidence            578899999999999999999999999999999999   99999999876555556666666679999999999999999


Q ss_pred             hHHHhHHHhCCchHHHHhcCcee
Q 042938           79 NQVMSLHVQNELGPLLVRAGAIW  101 (106)
Q Consensus        79 ~~~~~~~~~g~L~~~L~~~g~~~  101 (106)
                      +++..++++|+|.++|+++|+++
T Consensus        83 ~~~~~~~~~g~L~~~l~~~g~~~  105 (105)
T 1kte_A           83 TDLESMHKRGELLTRLQQVGAVK  105 (105)
T ss_dssp             HHHHHHHHHTHHHHHHHHHTCBC
T ss_pred             HHHHHHHHCCcHHHHHHHcCCCC
Confidence            99999999999999999999974

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=99.95  E-value=5.3e-28  Score=153.17  Aligned_cols=96  Identities=29%  Similarity=0.532  Sum_probs=87.6

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHH-HHHHhhcC---CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeec
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSI-QTLICGFG---ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGG   77 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~-~~~L~~~~---v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg   77 (106)
                      +.+++++.+.+|++|++++||+|.++ +.+|++++   ++|+++||+.+++..+.++.+...++.+++|+||+||++|||
T Consensus        28 ~~v~~~i~~~~Vvvy~~~~Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~vfi~g~~igG  107 (129)
T 3ctg_A           28 AHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGG  107 (129)
T ss_dssp             HHHHHHHHHSSEEEEECTTCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEES
T ss_pred             HHHHHHHcCCCEEEEECCCCCchHHHHHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhCCCCCCEEEECCEEEcC
Confidence            46788899999999999999999999 99999999   999999999988766666777777677999999999999999


Q ss_pred             chHHHhHHHhCCchHHHHhc
Q 042938           78 PNQVMSLHVQNELGPLLVRA   97 (106)
Q Consensus        78 ~~~~~~~~~~g~L~~~L~~~   97 (106)
                      +|++.+++++|+|.++|+++
T Consensus       108 ~d~l~~l~~~G~L~~~L~~a  127 (129)
T 3ctg_A          108 NSDLETLKKNGKLAEILKPV  127 (129)
T ss_dssp             HHHHHHHHHTTHHHHHTTTT
T ss_pred             HHHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999754

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=99.95  E-value=2.9e-27  Score=146.37  Aligned_cols=101  Identities=20%  Similarity=0.443  Sum_probs=91.6

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCC---ceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecc
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGAN---PTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGP   78 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~---~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~   78 (106)
                      +.+.+++++.+|++|++++||+|.+++.+|++.+++   |..+||+.+++..+.++.+.+..+.+++|++|+||+.+||+
T Consensus        10 ~~~~~~i~~~~vv~f~~~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~   89 (114)
T 2hze_A           10 EFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIFFGKTSIGGY   89 (114)
T ss_dssp             HHHHTTCCTTCEEEEECTTCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEETTEEEESH
T ss_pred             HHHHHHhccCCEEEEEeCCChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCEEEeCc
Confidence            467889999999999999999999999999999999   99999999876555656666666679999999999999999


Q ss_pred             hHHHhHHHhCCchHHHHhcCceee
Q 042938           79 NQVMSLHVQNELGPLLVRAGAIWL  102 (106)
Q Consensus        79 ~~~~~~~~~g~L~~~L~~~g~~~~  102 (106)
                      +++..+..+|+|.++|+++|++++
T Consensus        90 ~~~~~~~~~~~L~~~L~~~g~~~~  113 (114)
T 2hze_A           90 SDLLEIDNMDALGDILSSIGVLRT  113 (114)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTCBCC
T ss_pred             HHHHHHHHCChHHHHHHHcCCeee
Confidence            999999999999999999999875

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.95  E-value=1.5e-27  Score=146.83  Aligned_cols=94  Identities=22%  Similarity=0.417  Sum_probs=84.5

Q ss_pred             hHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938            2 DMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      +.+.++++.++|++|++     ++||+|.+++.+|++++++|..+||+.++   ++++.+...++.+++|+||+||++||
T Consensus         6 ~~~~~~i~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~---~~~~~l~~~~g~~~vP~ifi~g~~ig   82 (109)
T 1wik_A            6 SGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDE---EVRQGLKTFSNWPTYPQLYVRGDLVG   82 (109)
T ss_dssp             CCHHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCH---HHHHHHHHHHSCCSSCEEECSSSEEE
T ss_pred             HHHHHHhccCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCH---HHHHHHHHHhCCCCCCEEEECCEEEc
Confidence            45788999999999999     99999999999999999999999999764   34456666667799999999999999


Q ss_pred             cchHHHhHHHhCCchHHHHhcC
Q 042938           77 GPNQVMSLHVQNELGPLLVRAG   98 (106)
Q Consensus        77 g~~~~~~~~~~g~L~~~L~~~g   98 (106)
                      |++++..++++|+|.++|++++
T Consensus        83 G~d~l~~l~~~g~L~~~L~~a~  104 (109)
T 1wik_A           83 GLDIVKELKDNGELLPILKGES  104 (109)
T ss_dssp             CHHHHHHHHHHTCSHHHHHTCC
T ss_pred             CHHHHHHHHHCCCHHHHHhccc
Confidence            9999999999999999998765

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=99.94  E-value=4.2e-27  Score=143.74  Aligned_cols=92  Identities=23%  Similarity=0.433  Sum_probs=82.1

Q ss_pred             hHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938            2 DMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      +.+.+++++++|++|++     ++||+|.+++.+|++++++|..+||+.++.   .++.+...++.+++|+||+||++||
T Consensus         8 ~~~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~---~~~~l~~~~g~~~vP~v~i~g~~ig   84 (105)
T 2yan_A            8 ERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEE---VRQGLKAYSNWPTYPQLYVKGELVG   84 (105)
T ss_dssp             HHHHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHH---HHHHHHHHHTCCSSCEEEETTEEEE
T ss_pred             HHHHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHH---HHHHHHHHHCCCCCCeEEECCEEEe
Confidence            46778899999999999     999999999999999999999999998643   4446666666799999999999999


Q ss_pred             cchHHHhHHHhCCchHHHHh
Q 042938           77 GPNQVMSLHVQNELGPLLVR   96 (106)
Q Consensus        77 g~~~~~~~~~~g~L~~~L~~   96 (106)
                      |++++.+++++|+|.++|++
T Consensus        85 g~d~~~~l~~~g~L~~~l~~  104 (105)
T 2yan_A           85 GLDIVKELKENGELLPILRG  104 (105)
T ss_dssp             CHHHHHHHHHTTCHHHHHTT
T ss_pred             ChHHHHHHHHCCCHHHHhcc
Confidence            99999999999999999964

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=99.94  E-value=5.3e-27  Score=142.46  Aligned_cols=84  Identities=23%  Similarity=0.416  Sum_probs=75.7

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhC-CCCCccEEEECCeEeecchHHHhHHHh
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG-CQPTVPAVFIGQRLVGGPNQVMSLHVQ   87 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~-~~~tvP~ifv~g~~iGg~~~~~~~~~~   87 (106)
                      ..++|+||++++||+|.+++.+|++++++|+++||+.+++   .++.+...+ +..++|+||+||++|||++++.+++++
T Consensus        14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~---~~~~l~~~~~g~~~vP~ifi~g~~igG~d~l~~~~~~   90 (99)
T 3qmx_A           14 VSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNE---AREAMAARANGKRSLPQIFIDDQHIGGCDDIYALDGA   90 (99)
T ss_dssp             CCCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHH---HHHHHHHHTTTCCCSCEEEETTEEEESHHHHHHHHHT
T ss_pred             CCCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHH---HHHHHHHHhCCCCCCCEEEECCEEEeChHHHHHHHHc
Confidence            4678999999999999999999999999999999998754   344666665 789999999999999999999999999


Q ss_pred             CCchHHHH
Q 042938           88 NELGPLLV   95 (106)
Q Consensus        88 g~L~~~L~   95 (106)
                      |+|.++|+
T Consensus        91 g~L~~~L~   98 (99)
T 3qmx_A           91 GKLDPLLH   98 (99)
T ss_dssp             TCHHHHHT
T ss_pred             CCHHHHhc
Confidence            99999986

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=99.94  E-value=1.5e-26  Score=138.54  Aligned_cols=83  Identities=14%  Similarity=0.187  Sum_probs=74.0

Q ss_pred             CCCEEEEEcCCCchH------HHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC--CCCccEEEECCeEeecchHH
Q 042938           10 EKPVVIFSKSECCIC------FSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC--QPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C------~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~--~~tvP~ifv~g~~iGg~~~~   81 (106)
                      +.+|++|++++||+|      .+++++|++.|++|+++||+.+++   .++.+...++  ..++|+||+||++|||+|++
T Consensus         1 M~~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~---~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~l   77 (93)
T 1t1v_A            1 MSGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNA---LRDEMRTLAGNPKATPPQIVNGNHYCGDYELF   77 (93)
T ss_dssp             CCCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHH---HHHHHHHHTTCTTCCSCEEEETTEEEEEHHHH
T ss_pred             CCCEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHH---HHHHHHHHhCCCCCCCCEEEECCEEEeCHHHH
Confidence            368999999999999      899999999999999999997643   4456666666  57999999999999999999


Q ss_pred             HhHHHhCCchHHHH
Q 042938           82 MSLHVQNELGPLLV   95 (106)
Q Consensus        82 ~~~~~~g~L~~~L~   95 (106)
                      .+++++|+|.++|+
T Consensus        78 ~~l~~~g~L~~~l~   91 (93)
T 1t1v_A           78 VEAVEQDTLQEFLK   91 (93)
T ss_dssp             HHHHHTTCHHHHTT
T ss_pred             HHHHhcCCHHHHhC
Confidence            99999999999885

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=99.93  E-value=1.6e-25  Score=161.80  Aligned_cols=99  Identities=24%  Similarity=0.384  Sum_probs=87.1

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHHHH-HHhhcCCCceEE---EcccCCCchHHHHHHHHhCCCCCccEEEECCeEeec
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSIQT-LICGFGANPTVY---ELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGG   77 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~-~L~~~~v~~~~v---~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg   77 (106)
                      +++++++++++|+||++++||||.++++ +|++++++|+.+   ++|..++..+++++|.+.++.++||+|||||++|||
T Consensus       252 ~~V~~lI~~~~VvVYsk~~CPyC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~e~~~~L~~~tG~~TVPqVFI~Gk~IGG  331 (362)
T 2jad_A          252 KHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGG  331 (362)
T ss_dssp             HHHHHHHHTCSEEEEECTTCHHHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHHHHHHHHHHHHCCCSSCEEEETTEEEES
T ss_pred             HHHHHHhccCCEEEEEcCCCcchHHHHHHHHHHcCCCcceEEEEEeccccCCHHHHHHHHHHHCCCCcCEEEECCEEEEC
Confidence            4688999999999999999999999997 899999998544   556666666788888888778999999999999999


Q ss_pred             chHHHhHHHhCCchHHHHhcCce
Q 042938           78 PNQVMSLHVQNELGPLLVRAGAI  100 (106)
Q Consensus        78 ~~~~~~~~~~g~L~~~L~~~g~~  100 (106)
                      +|++.+++++|+|.++|+.+|+.
T Consensus       332 ~DdL~~L~~~GeL~~lL~~~~~~  354 (362)
T 2jad_A          332 NDDLQELRETGELEELLEPILAN  354 (362)
T ss_dssp             HHHHHHHHHSSHHHHHHHHHC--
T ss_pred             hHHHHHhhhCChHHHHHHhCchh
Confidence            99999999999999999999985

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=99.93  E-value=3.7e-25  Score=142.71  Aligned_cols=101  Identities=29%  Similarity=0.485  Sum_probs=88.4

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHH
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~   81 (106)
                      +.+.+++...+|++|+++|||+|.+++.+|++.+++|..+|||.+++..+.++.+....+..++|+||+||++|||++++
T Consensus        40 ~~~~~~i~~~~Vvvf~~~~Cp~C~~~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~ifi~G~~igG~d~l  119 (146)
T 2ht9_A           40 NQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDT  119 (146)
T ss_dssp             HHHHHHHHHCSEEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEEETTEEEESHHHH
T ss_pred             HHHHHHhcCCCEEEEECCCChhHHHHHHHHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEEECCEEEeCchHH
Confidence            45778888889999999999999999999999999999999998866555666666666679999999999999999999


Q ss_pred             HhHHHhCCchHHHHhcCceee
Q 042938           82 MSLHVQNELGPLLVRAGAIWL  102 (106)
Q Consensus        82 ~~~~~~g~L~~~L~~~g~~~~  102 (106)
                      ..++.+|+|.++|+.+|+..-
T Consensus       120 ~~l~~~g~L~~~L~~~g~~~~  140 (146)
T 2ht9_A          120 HRLHKEGKLLPLVHQCYLKKS  140 (146)
T ss_dssp             HHHHHTTCHHHHHHHTTC---
T ss_pred             HHHHHcChHHHHHHHcCcchh
Confidence            999999999999999998654

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.93  E-value=4.6e-25  Score=139.51  Aligned_cols=99  Identities=29%  Similarity=0.513  Sum_probs=88.2

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHH
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~   81 (106)
                      +.+.+++..++|++|++++||+|++++.+|++++++|..+|||.+++..+.++.+....+..++|+||+||++|||++++
T Consensus        18 ~~~~~~i~~~~vvvf~~~~Cp~C~~~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i~G~~igg~~~l   97 (130)
T 2cq9_A           18 NQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDT   97 (130)
T ss_dssp             HHHHHHHHHSSEEEEECSSCSHHHHHHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEETTEEEEEHHHH
T ss_pred             HHHHHHHcCCcEEEEEcCCChHHHHHHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEECCEEEcChHHH
Confidence            45677888889999999999999999999999999999999998865555555666666679999999999999999999


Q ss_pred             HhHHHhCCchHHHHhcCce
Q 042938           82 MSLHVQNELGPLLVRAGAI  100 (106)
Q Consensus        82 ~~~~~~g~L~~~L~~~g~~  100 (106)
                      ..++.+|+|.++|+++|+.
T Consensus        98 ~~~~~~~~L~~~L~~~g~~  116 (130)
T 2cq9_A           98 HRLHKEGKLLPLVHQCYLK  116 (130)
T ss_dssp             HHHHHHTSSHHHHHHHSSS
T ss_pred             HHHHHcCcHHHHHHHcCcH
Confidence            9999999999999999874

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.93  E-value=1.8e-25  Score=138.10  Aligned_cols=85  Identities=12%  Similarity=0.124  Sum_probs=74.8

Q ss_pred             CCCEEEEEcCCCchHH------HHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh--------CCCCCccEEEECCeEe
Q 042938           10 EKPVVIFSKSECCICF------SIQTLICGFGANPTVYELDQIPNGPQIERALQQL--------GCQPTVPAVFIGQRLV   75 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~------~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~--------~~~~tvP~ifv~g~~i   75 (106)
                      ..+|+||++++||+|.      +++.+|++++++|+++||+.+++   .++.+...        ++.+++|+|||||++|
T Consensus         7 ~m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~---~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~i   83 (111)
T 2ct6_A            7 GMVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEE---QRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYC   83 (111)
T ss_dssp             CCCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHH---HHHHHHHSCCTTTCCSSSSCCSCEEEETTEEE
T ss_pred             ccEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHH---HHHHHHHHhcccccccCCCCCCCEEEECCEEE
Confidence            3479999999999999      89999999999999999998643   34455555        2779999999999999


Q ss_pred             ecchHHHhHHHhCCchHHHHhc
Q 042938           76 GGPNQVMSLHVQNELGPLLVRA   97 (106)
Q Consensus        76 Gg~~~~~~~~~~g~L~~~L~~~   97 (106)
                      ||+|++.+++++|+|.++|+.+
T Consensus        84 GG~d~l~~l~~~g~L~~~L~~~  105 (111)
T 2ct6_A           84 GDYDSFFESKESNTVFSFLGLK  105 (111)
T ss_dssp             EEHHHHHHHHTTTCHHHHHTCC
T ss_pred             eCHHHHHHHHHcCCHHHHHcCC
Confidence            9999999999999999999764

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=99.92  E-value=1.1e-24  Score=136.32  Aligned_cols=81  Identities=9%  Similarity=0.067  Sum_probs=71.4

Q ss_pred             EEEEEcCCCchH------HHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhC--------CCCCccEEEECCeEeecc
Q 042938           13 VVIFSKSECCIC------FSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG--------CQPTVPAVFIGQRLVGGP   78 (106)
Q Consensus        13 v~vf~~~~Cp~C------~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~--------~~~tvP~ifv~g~~iGg~   78 (106)
                      |+||+++.||+|      .+++.+|+++|++|+++||+.+++.++   .+.+..        |.+++|+||+||++|||+
T Consensus         2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~---eM~~~~~~~~~~~~G~~tvPQIFi~~~~iGG~   78 (121)
T 1u6t_A            2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRK---WMRENVPENSRPATGYPLPPQIFNESQYRGDY   78 (121)
T ss_dssp             EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHH---HHHHHSCGGGSCSSSSCCSCEEEETTEEEEEH
T ss_pred             EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHH---HHHHhccccccccCCCcCCCEEEECCEEEech
Confidence            799999999999      799999999999999999998765443   444333        678999999999999999


Q ss_pred             hHHHhHHHhCCchHHHHh
Q 042938           79 NQVMSLHVQNELGPLLVR   96 (106)
Q Consensus        79 ~~~~~~~~~g~L~~~L~~   96 (106)
                      |++.++.++|+|.++|..
T Consensus        79 Dd~~~l~e~g~L~~lL~~   96 (121)
T 1u6t_A           79 DAFFEARENNAVYAFLGL   96 (121)
T ss_dssp             HHHHHHHHTTCHHHHHTC
T ss_pred             HHHHHhhhhChHHHHHcC
Confidence            999999999999999953

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=99.90  E-value=1.1e-23  Score=125.13  Aligned_cols=87  Identities=25%  Similarity=0.490  Sum_probs=75.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCC
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNE   89 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~   89 (106)
                      +.++++|++++||+|++++.+|++.+++|+.+||+.++.   ..+.+.+..+..++|++|+||+.+||++++.++.++|+
T Consensus         5 m~~v~ly~~~~C~~C~~~~~~L~~~~i~~~~~di~~~~~---~~~~l~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~~~   81 (92)
T 2khp_A            5 MVDVIIYTRPGCPYCARAKALLARKGAEFNEIDASATPE---LRAEMQERSGRNTFPQIFIGSVHVGGCDDLYALEDEGK   81 (92)
T ss_dssp             CCCEEEEECTTCHHHHHHHHHHHHTTCCCEEEESTTSHH---HHHHHHHHHTSSCCCEEEETTEEEESHHHHHHHHTTTC
T ss_pred             cccEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEcCHHHHHHHHHcCC
Confidence            457999999999999999999999999999999996533   33344444456899999999999999999999999999


Q ss_pred             chHHHHhcCce
Q 042938           90 LGPLLVRAGAI  100 (106)
Q Consensus        90 L~~~L~~~g~~  100 (106)
                      |+++|+ +|++
T Consensus        82 l~~~l~-~g~~   91 (92)
T 2khp_A           82 LDSLLK-TGKL   91 (92)
T ss_dssp             HHHHHH-HSSC
T ss_pred             HHHHHh-ccCc
Confidence            999999 8885

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=99.90  E-value=3.8e-24  Score=128.44  Aligned_cols=82  Identities=17%  Similarity=0.318  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh-CCCCCccEEEE-CCeEeecchHHHhHHHh
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL-GCQPTVPAVFI-GQRLVGGPNQVMSLHVQ   87 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~-~~~~tvP~ifv-~g~~iGg~~~~~~~~~~   87 (106)
                      +.+|+||++++||||.++|++|++.|++|+++||+.+++..+   .+.+. +|.+|||+||+ ||..++|++.       
T Consensus         3 ta~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~---~~~~~~~G~~tVP~I~i~Dg~~l~~~~~-------   72 (92)
T 2lqo_A            3 TAALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAE---FVGSVNGGNRTVPTVKFADGSTLTNPSA-------   72 (92)
T ss_dssp             SSCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHH---HHHHHSSSSSCSCEEEETTSCEEESCCH-------
T ss_pred             CCcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHH---HHHHHcCCCCEeCEEEEeCCEEEeCCCH-------
Confidence            568999999999999999999999999999999998776544   34444 57799999999 6788888752       


Q ss_pred             CCchHHHHhcCcee
Q 042938           88 NELGPLLVRAGAIW  101 (106)
Q Consensus        88 g~L~~~L~~~g~~~  101 (106)
                      .+|.+.|+++|.++
T Consensus        73 ~el~~~L~el~gL~   86 (92)
T 2lqo_A           73 DEVKAKLVKIAGLE   86 (92)
T ss_dssp             HHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHhcCCc
Confidence            25566777777654

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=99.89  E-value=1e-22  Score=118.08  Aligned_cols=81  Identities=25%  Similarity=0.467  Sum_probs=70.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCch
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELG   91 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L~   91 (106)
                      +|++|++++||+|.+++.+|++.+++|+.+|++.+++.   .+.+.+..+..++|++|+||+.+||++++.++.++|+|+
T Consensus         2 ~i~~y~~~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~---~~~~~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~g~l~   78 (82)
T 1fov_A            2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAK---REEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGLD   78 (82)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHH---HHHHHHHHSSCCSCEEEETTEEEESHHHHHHHHHTTCSH
T ss_pred             cEEEEECCCChhHHHHHHHHHHCCCCcEEEECCCCHHH---HHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHCCCHH
Confidence            68999999999999999999999999999999975443   234444445689999999999999999999999999999


Q ss_pred             HHHH
Q 042938           92 PLLV   95 (106)
Q Consensus        92 ~~L~   95 (106)
                      ++|+
T Consensus        79 ~~l~   82 (82)
T 1fov_A           79 PLLK   82 (82)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9874

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=99.88  E-value=1.3e-22  Score=119.94  Aligned_cols=82  Identities=23%  Similarity=0.449  Sum_probs=71.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhC-CCCCccEEEECCeEeecchHHHhHHHhC
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG-CQPTVPAVFIGQRLVGGPNQVMSLHVQN   88 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~-~~~tvP~ifv~g~~iGg~~~~~~~~~~g   88 (106)
                      +.+|++|++++||+|++++.+|++.+++|..+||+     .+..+.+.+.. +..++|++|+||+.+||++++.+++++|
T Consensus         5 m~~v~~y~~~~C~~C~~~~~~L~~~~i~~~~vdv~-----~~~~~~l~~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~g   79 (89)
T 2klx_A            5 MKEIILYTRPNCPYCKRARDLLDKKGVKYTDIDAS-----TSLRQEMVQRANGRNTFPQIFIGDYHVGGCDDLYALENKG   79 (89)
T ss_dssp             CCCEEEESCSCCTTTHHHHHHHHHHTCCEEEECSC-----HHHHHHHHHHHHSSCCSCEEEETTEECCSHHHHHHHHHHT
T ss_pred             cceEEEEECCCChhHHHHHHHHHHcCCCcEEEECC-----HHHHHHHHHHhCCCCCcCEEEECCEEEeChHHHHHHHHcC
Confidence            46799999999999999999999999999999998     22223444434 6699999999999999999999999999


Q ss_pred             CchHHHHh
Q 042938           89 ELGPLLVR   96 (106)
Q Consensus        89 ~L~~~L~~   96 (106)
                      +|.++|++
T Consensus        80 ~l~~~l~~   87 (89)
T 2klx_A           80 KLDSLLQD   87 (89)
T ss_dssp             THHHHHHH
T ss_pred             cHHHHHhh
Confidence            99999975

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=99.88  E-value=1e-22  Score=120.25  Aligned_cols=74  Identities=15%  Similarity=0.149  Sum_probs=62.9

Q ss_pred             CEEEEEcC----CCchHHHHHHHHhhcCCCceEEEcccCC--CchHHHHHHHHhCCCC-----CccEEEE-CCeEeecch
Q 042938           12 PVVIFSKS----ECCICFSIQTLICGFGANPTVYELDQIP--NGPQIERALQQLGCQP-----TVPAVFI-GQRLVGGPN   79 (106)
Q Consensus        12 ~v~vf~~~----~Cp~C~~~~~~L~~~~v~~~~v~vd~~~--~~~~~~~~l~~~~~~~-----tvP~ifv-~g~~iGg~~   79 (106)
                      +|+||+++    +||+|.+++.+|+++|++|+++||+..+  ..++.++.+.+.++.+     ++|+||+ ||++|||++
T Consensus         1 ~v~iY~~~~~~~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~d   80 (87)
T 1aba_A            1 MFKVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFD   80 (87)
T ss_dssp             CEEEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHH
T ss_pred             CEEEEEeCCCCCcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCHH
Confidence            48999999    9999999999999999999999998543  3334555666665667     9999999 999999999


Q ss_pred             HHHhHH
Q 042938           80 QVMSLH   85 (106)
Q Consensus        80 ~~~~~~   85 (106)
                      ++.+++
T Consensus        81 ~l~~~~   86 (87)
T 1aba_A           81 QLREYF   86 (87)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            998875

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.87  E-value=2.6e-21  Score=118.68  Aligned_cols=100  Identities=38%  Similarity=0.620  Sum_probs=85.7

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHH
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~   81 (106)
                      +.++++++.++|++|+.+|||+|++++.+|++.+.+|..++|+.+++..++...+....+..++|++|++|+.+||++.+
T Consensus        11 ~~~~~~~~~~~vv~f~a~~C~~C~~~~~~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~~~~g~~v~~~~~~   90 (116)
T 2e7p_A           11 KKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDTV   90 (116)
T ss_dssp             HHHHHHHTSSSEEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTEEEECHHHH
T ss_pred             HHHHHHHcCCCEEEEECCCChhHHHHHHHHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCEEECChHHH
Confidence            45677888889999999999999999999999999999999998877555444555444458999999999999999999


Q ss_pred             HhHHHhCCchHHHHhcCcee
Q 042938           82 MSLHVQNELGPLLVRAGAIW  101 (106)
Q Consensus        82 ~~~~~~g~L~~~L~~~g~~~  101 (106)
                      ..+...++|.++|+++|++.
T Consensus        91 ~~~~~~~~l~~~l~~~g~~~  110 (116)
T 2e7p_A           91 VEKHQRNELLPLLQDAAATA  110 (116)
T ss_dssp             HHHHHTTCHHHHHHHTTC--
T ss_pred             HHHHhCChHHHHHHHccccc
Confidence            99999999999999999864

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=99.85  E-value=5.7e-21  Score=112.10  Aligned_cols=76  Identities=16%  Similarity=0.235  Sum_probs=64.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCC-----CCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQ-----PTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~-----~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .+|++|++++||+|++++.+|++++++|++++||..++....+ .+.+.++.     .++|++|+||++|||++++.+++
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~-el~~~~g~~~~~~~~vP~i~i~g~~i~g~~~i~~~~   82 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFY-DEMNQSGKVIFPISTVPQIFIDDEHIGGFTELKANA   82 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHH-HHHHTTTCCSSCCCSSCEEEETTEEEESHHHHHHTH
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcCCCceEEEeecCCChhHHH-HHHHHhCCCCCCCCccCEEEECCEEEeChHHHHHHH
Confidence            4699999999999999999999999999999988765533333 35555666     89999999999999999999886


Q ss_pred             Hh
Q 042938           86 VQ   87 (106)
Q Consensus        86 ~~   87 (106)
                      ++
T Consensus        83 ~~   84 (89)
T 3msz_A           83 DK   84 (89)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.84  E-value=1.1e-20  Score=143.35  Aligned_cols=95  Identities=24%  Similarity=0.511  Sum_probs=88.2

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHH
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~   81 (106)
                      +++++++++++|++|++++||+|.+++++|++.+++|+++||+.+++..++++++...++.+++|+||+||+++||++++
T Consensus         9 ~~v~~~i~~~~v~vy~~~~Cp~C~~~k~~L~~~~i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v~i~g~~igG~~~l   88 (598)
T 2x8g_A            9 QWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTV   88 (598)
T ss_dssp             HHHHHHHHHCSEEEEECTTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEEEETTEEEECHHHH
T ss_pred             HHHHHHhccCCEEEEECCCChhHHHHHHHHHHCCCCcEEEEcccCcchHHHHHHHHHHhCCceeCEEEECCEEEEeeehh
Confidence            57889999999999999999999999999999999999999999877777778888777789999999999999999999


Q ss_pred             HhHHHhCCchHHHHh
Q 042938           82 MSLHVQNELGPLLVR   96 (106)
Q Consensus        82 ~~~~~~g~L~~~L~~   96 (106)
                      .+++..|+|++.+.+
T Consensus        89 ~~~~~~g~L~~~l~~  103 (598)
T 2x8g_A           89 LKYYSNDELAGIVNE  103 (598)
T ss_dssp             HHHHHTTCHHHHHHC
T ss_pred             hhhhhcCcchhhccc
Confidence            999999999999865

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=99.79  E-value=2e-19  Score=109.14  Aligned_cols=72  Identities=14%  Similarity=0.360  Sum_probs=61.2

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC--CchHHHHHHHHhCCCCCccEEEECC-eEeecchH
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIP--NGPQIERALQQLGCQPTVPAVFIGQ-RLVGGPNQ   80 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~--~~~~~~~~l~~~~~~~tvP~ifv~g-~~iGg~~~   80 (106)
                      ..++|++|++++||+|.+++.+|++++++|+.+||+..+  +..++.+.+...++..++|++|++| +++||+++
T Consensus        20 ~~~~v~ly~~~~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~igg~~~   94 (103)
T 3nzn_A           20 DRGKVIMYGLSTCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIVGFKE   94 (103)
T ss_dssp             CCSCEEEEECSSCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEESCCH
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEEcCCH
Confidence            467899999999999999999999999999999999743  2234555556667779999999999 99999985

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.78  E-value=3.1e-19  Score=103.91  Aligned_cols=74  Identities=24%  Similarity=0.329  Sum_probs=60.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHhh-----cCCCceEEEcccCCCchHHHHHHHHhCC--CCCccEEEECCeEeecchHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICG-----FGANPTVYELDQIPNGPQIERALQQLGC--QPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~-----~~v~~~~v~vd~~~~~~~~~~~l~~~~~--~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +|++|+++|||+|.+++.+|++     .+++|..+|++.++...+   .+.+..+  ..++|++|+||+.+||++++.++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~---~l~~~~~~~~~~vP~i~~~g~~i~~~~~l~~~   78 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKE---DLQQKAGKPVETVPQIFVDQQHIGGYTDFAAW   78 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSH---HHHHHTCCCSCCSCEEEETTEEEESSHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHH---HHHHHhCCCCceeCeEEECCEEEECHHHHHHH
Confidence            5899999999999999999998     688999999987654332   2333344  58999999999999999999888


Q ss_pred             HHhC
Q 042938           85 HVQN   88 (106)
Q Consensus        85 ~~~g   88 (106)
                      .+++
T Consensus        79 ~~~~   82 (85)
T 1ego_A           79 VKEN   82 (85)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7654

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=99.76  E-value=2.5e-18  Score=101.71  Aligned_cols=71  Identities=20%  Similarity=0.315  Sum_probs=58.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCc--hHHHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNG--PQIERALQQLGCQPTVPAVFIGQRLVGGPNQ   80 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~--~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~   80 (106)
                      +.+|++|+.++||+|++++.+|++++++|+.+||+..+..  .++.+.+.+.++..++|++++||+.+||++.
T Consensus        11 M~~v~ly~~~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~G~~~   83 (92)
T 3ic4_A           11 MAEVLMYGLSTCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYNE   83 (92)
T ss_dssp             CSSSEEEECTTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEESCCH
T ss_pred             CceEEEEECCCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEeCCCH
Confidence            4579999999999999999999999999999999965432  2233455444556899999999999999963

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.75  E-value=5.2e-18  Score=115.93  Aligned_cols=74  Identities=23%  Similarity=0.412  Sum_probs=63.6

Q ss_pred             hhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938            8 VNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus         8 ~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +.+.+|++|++++||+|.+++.+|++++++|+++||+.++..    +.+.+.++.+++|+||+||++|||++++.++.
T Consensus       167 i~~~~i~ly~~~~Cp~C~~a~~~L~~~~i~~~~~~i~~~~~~----~~l~~~~g~~~vP~~~~~g~~i~g~~~i~~~l  240 (241)
T 1nm3_A          167 QVQESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDATI----VSVRAVSGRTTVPQVFIGGKHIGGSDDLEKYF  240 (241)
T ss_dssp             CCCCCEEEEECSSCHHHHHHHHHHHHHTCCCEEEETTTTCCH----HHHHHHTCCSSSCEEEETTEEEESHHHHHHC-
T ss_pred             cccceEEEEECCCChHHHHHHHHHHHcCCceEEEECCCchHH----HHHHHHhCCCCcCEEEECCEEEECHHHHHHHh
Confidence            346789999999999999999999999999999999987653    34455567799999999999999999998753

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=99.73  E-value=3.7e-18  Score=98.64  Aligned_cols=77  Identities=18%  Similarity=0.362  Sum_probs=60.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCch
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELG   91 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L~   91 (106)
                      +|++|+.++||+|++++.+|++.+++|..+|++.+++.   .+.+.+. +..++|++|+||+.+||++.       .+|.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~---~~~~~~~-g~~~vP~~~~~g~~~~g~~~-------~~l~   70 (81)
T 1h75_A            2 RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEA---AEALRAQ-GFRQLPVVIAGDLSWSGFRP-------DMIN   70 (81)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHH---HHHHHHT-TCCSSCEEEETTEEEESCCH-------HHHG
T ss_pred             EEEEEcCCCChhHHHHHHHHHHCCCCeEEEECCCCHHH---HHHHHHh-CCCccCEEEECCEEEecCCH-------HHHH
Confidence            68999999999999999999999999999999876542   3344444 45899999999999999862       2455


Q ss_pred             HHHHhcCc
Q 042938           92 PLLVRAGA   99 (106)
Q Consensus        92 ~~L~~~g~   99 (106)
                      ++|+++++
T Consensus        71 ~~l~~~~~   78 (81)
T 1h75_A           71 RLHPAPHA   78 (81)
T ss_dssp             GGSCCC--
T ss_pred             HHHhcccc
Confidence            55555443

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=99.67  E-value=2.1e-16  Score=89.64  Aligned_cols=64  Identities=11%  Similarity=0.166  Sum_probs=54.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecch
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPN   79 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~   79 (106)
                      ++++|+.++||+|.+++.+|++.+++|..+|++.+++   ..+.++. .+..++|++++||+.+||++
T Consensus         2 ~i~~y~~~~C~~C~~~~~~l~~~~i~~~~~di~~~~~---~~~~~~~-~~~~~vP~l~~~g~~~~g~~   65 (75)
T 1r7h_A            2 SITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDE---ARDYVMA-LGYVQAPVVEVDGEHWSGFR   65 (75)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHH---HHHHHHH-TTCBCCCEEEETTEEEESCC
T ss_pred             eEEEEeCCCChHHHHHHHHHHHcCCCcEEEECCCCHH---HHHHHHH-cCCCccCEEEECCeEEcCCC
Confidence            5899999999999999999999999999999997643   3334444 45589999999999999986

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.62  E-value=3.7e-16  Score=90.34  Aligned_cols=70  Identities=19%  Similarity=0.220  Sum_probs=54.2

Q ss_pred             CCEEEEEcCCCchHHHHHH----HHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCe--EeecchHHHhH
Q 042938           11 KPVVIFSKSECCICFSIQT----LICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQR--LVGGPNQVMSL   84 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~----~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~--~iGg~~~~~~~   84 (106)
                      .++++|+++|||+|++++.    ++++.++++..++|+.+++..+   ...+++ ..++|++++||+  ++|+..+..++
T Consensus         2 ~~~~~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~g-v~~vPt~~i~g~~~~~G~~~~~~~l   77 (80)
T 2k8s_A            2 ASKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIA---EAEKAG-VKSVPALVIDGAAFHINFGAGIDDL   77 (80)
T ss_dssp             CEEEEEEECSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHH---HHHHHT-CCEEEEEEETTEEEEEEEEEEHHHH
T ss_pred             cceEEEeCCCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHH---HHHHcC-CCcCCEEEECCEEEEeccCcCHHHh
Confidence            4689999999999999999    6666788899999987533333   333444 589999999999  78887666554

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.56  E-value=4.6e-15  Score=89.51  Aligned_cols=65  Identities=11%  Similarity=0.158  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHh--hcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeE--eecchH
Q 042938           10 EKPVVIFSKSECCICFSIQTLIC--GFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRL--VGGPNQ   80 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~--~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~--iGg~~~   80 (106)
                      ...|++|+++|||+|.+++.+|+  ..+++|..+||+. ++..+   . ....+ .++|++|+||+.  +||++.
T Consensus        16 ~~~v~~f~~~~C~~C~~~~~~L~~l~~~i~~~~vdi~~-~~~~e---l-~~~~g-~~vP~l~~~g~~~~~~g~~~   84 (100)
T 1wjk_A           16 LPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITL-PENST---W-YERYK-FDIPVFHLNGQFLMMHRVNT   84 (100)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTS-STTHH---H-HHHSS-SSCSEEEESSSEEEESSCCH
T ss_pred             CCEEEEEeCCCCcchHHHHHHHHHhhhCCeEEEEECCC-cchHH---H-HHHHC-CCCCEEEECCEEEEecCCCH
Confidence            34589999999999999999999  5578899999983 23222   2 33355 899999999988  788763

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.53  E-value=2.4e-14  Score=84.63  Aligned_cols=59  Identities=15%  Similarity=0.212  Sum_probs=48.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCC-ceEEEcccCCCchHHHHHHHHhCCCCCccEEE-ECCeEeecc
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGAN-PTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IGQRLVGGP   78 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~-~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~   78 (106)
                      +|++|+++|||+|..++.+|++.+.+ |..+|||.+++      ...+++. + +|+++ +||+.++|.
T Consensus         2 ~vv~f~a~~C~~C~~~~~~L~~~~~~~~~~vdid~~~~------l~~~~g~-~-vPtl~~~~G~~v~g~   62 (87)
T 1ttz_A            2 ALTLYQRDDCHLCDQAVEALAQARAGAFFSVFIDDDAA------LESAYGL-R-VPVLRDPMGRELDWP   62 (87)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHTTCCCEEEEECTTCHH------HHHHHTT-T-CSEEECTTCCEEESC
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHhheEEEECCCCHH------HHHHhCC-C-cCeEEEECCEEEeCC
Confidence            68999999999999999999999997 78889987653      2223343 4 99999 899999653

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.46  E-value=1.2e-13  Score=84.64  Aligned_cols=62  Identities=11%  Similarity=0.159  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhh----cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEe--ecch
Q 042938           10 EKPVVIFSKSECCICFSIQTLICG----FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLV--GGPN   79 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~i--Gg~~   79 (106)
                      +..|++|+++|||+|.+++.+|++    ++++|..+|||.+++      ...+++.  ++|++  |+||+.+  |+++
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~d~~------l~~~ygv--~VP~l~~~~dG~~v~~g~~~   98 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKSWFELEVINIDGNEH------LTRLYND--RVPVLFAVNEDKELCHYFLD   98 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHSCCCCEEEETTTCHH------HHHHSTT--SCSEEEETTTTEEEECSSCC
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhcCCeEEEEECCCCHH------HHHHhCC--CCceEEEEECCEEEEecCCC
Confidence            456999999999999999999998    799999999997653      2223343  49999  9999987  5553

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=99.38  E-value=1.8e-13  Score=95.61  Aligned_cols=70  Identities=14%  Similarity=0.183  Sum_probs=48.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhc----CC---CceEEEcc----cCCCch----HHHHHHHHhCCCCCc--cEEEECCe
Q 042938           11 KPVVIFSKSECCICFSIQTLICGF----GA---NPTVYELD----QIPNGP----QIERALQQLGCQPTV--PAVFIGQR   73 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~----~v---~~~~v~vd----~~~~~~----~~~~~l~~~~~~~tv--P~ifv~g~   73 (106)
                      ..|++|++++||||.+++.+|+++    ++   .|+..++|    .++...    .-++.+.+..+.++|  |+|||||+
T Consensus        44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~~~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI~Ing~  123 (270)
T 2axo_A           44 GVVELFTSQGCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAILNGR  123 (270)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEETTT
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHhhccCCeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEEEECCE
Confidence            358999999999999999999998    55   34321222    222221    122335555556888  99999999


Q ss_pred             -EeecchH
Q 042938           74 -LVGGPNQ   80 (106)
Q Consensus        74 -~iGg~~~   80 (106)
                       ++||+|.
T Consensus       124 ~~v~G~d~  131 (270)
T 2axo_A          124 DHVKGADV  131 (270)
T ss_dssp             EEEETTCH
T ss_pred             EeecCCCH
Confidence             7999974

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=99.38  E-value=1.4e-12  Score=80.38  Aligned_cols=69  Identities=13%  Similarity=0.172  Sum_probs=56.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC------------------------------
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG------------------------------   60 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~------------------------------   60 (106)
                      .|+||+.++||+|++++++|++.|++|+++|++.+ ++.+++++.++..|                              
T Consensus         1 ~i~iY~~~~C~~C~kak~~L~~~gi~~~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~~~~~~~   80 (114)
T 1rw1_A            1 TYVLYGIKACDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDEAKAIE   80 (114)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCCHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCceEEEeecCCCCCHHHHHHHHHhCChHHhccCCcHhHHhcCccccccCCHHHHHH
Confidence            37899999999999999999999999999999864 45555666665544                              


Q ss_pred             ------CCCCccEEEECCeEeecchH
Q 042938           61 ------CQPTVPAVFIGQRLVGGPNQ   80 (106)
Q Consensus        61 ------~~~tvP~ifv~g~~iGg~~~   80 (106)
                            .-...|.|..||+.+-||+.
T Consensus        81 ~l~~~p~likrPiv~~~~~~~vGf~~  106 (114)
T 1rw1_A           81 LMLAQPSMIKRPVLELGGRTLVGFKP  106 (114)
T ss_dssp             HHHHCGGGBCSCEEECSSCEEESCCH
T ss_pred             HHHhChhheeCcEEEECCEEEEeCCH
Confidence                  02478999999999989874

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=99.34  E-value=3.7e-12  Score=79.13  Aligned_cols=69  Identities=14%  Similarity=0.189  Sum_probs=57.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC---------------C--------------
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG---------------C--------------   61 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~---------------~--------------   61 (106)
                      .|++|+.++||+|++++.+|++.|++|+++|++.+ ++.+++++.++..+               +              
T Consensus         6 ~i~iY~~~~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~~~~~~~   85 (120)
T 2kok_A            6 SVTIYGIKNCDTMKKARIWLEDHGIDYTFHDYKKEGLDAETLDRFLKTVPWEQLLNRAGTTFRKLPEDVRSNVDAASARE   85 (120)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHTCCEEEEEHHHHCCCHHHHHHHHHHSCGGGTBCSSSHHHHHSCHHHHHSCCHHHHHH
T ss_pred             EEEEEECCCChHHHHHHHHHHHcCCcEEEEeeeCCCCCHHHHHHHHHHcChHhhccCCchhhHhcCchhhccCCHHHHHH
Confidence            59999999999999999999999999999999864 44555666666544               0              


Q ss_pred             -------CCCccEEEECCeEeecchH
Q 042938           62 -------QPTVPAVFIGQRLVGGPNQ   80 (106)
Q Consensus        62 -------~~tvP~ifv~g~~iGg~~~   80 (106)
                             -...|.|..+++.+-||+.
T Consensus        86 ~l~~~p~likrPiv~~~~~~~vGf~~  111 (120)
T 2kok_A           86 LMLAQPSMVKRPVLERDGKLMVGFKP  111 (120)
T ss_dssp             HHHHCGGGBCSSEEEETTEEEECCCH
T ss_pred             HHHhCcccEECCEEEECCEEEEeCCH
Confidence                   2478999999999999874

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=99.31  E-value=1.2e-11  Score=78.00  Aligned_cols=69  Identities=16%  Similarity=0.174  Sum_probs=55.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC-chHHHHHHHHhCC-----------------------------
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN-GPQIERALQQLGC-----------------------------   61 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~-~~~~~~~l~~~~~-----------------------------   61 (106)
                      .|++|+.++||+|.+++.+|++.|++|+.+||+.++. ..++++.+...+.                             
T Consensus         2 mi~lY~~~~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~el~~~l~~~~~~~~~l~n~~~~~~k~l~~~~~~ls~~~~~   81 (132)
T 1z3e_A            2 MVTLYTSPSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESMPLQDLY   81 (132)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHTCSSCGGGTBCTTSHHHHHHCCCGGGSBHHHHH
T ss_pred             eEEEEeCCCChHHHHHHHHHHHcCCceEEEEccCCCccHHHHHHHHHHcCCCHHHhhcCCchHHHhcCcccccCCHHHHH
Confidence            4899999999999999999999999999999998654 4456665543221                             


Q ss_pred             --------CCCccEEEECCeEeecchH
Q 042938           62 --------QPTVPAVFIGQRLVGGPNQ   80 (106)
Q Consensus        62 --------~~tvP~ifv~g~~iGg~~~   80 (106)
                              -...|.|..||+.+-||+.
T Consensus        82 ~~l~~~p~likrPiv~~~~~~~vGf~~  108 (132)
T 1z3e_A           82 RLINEHPGLLRRPIIIDEKRLQVGYNE  108 (132)
T ss_dssp             HHHHHCGGGBCSCEEECSSCEEESCCT
T ss_pred             HHHHhCccceeCCEEEECCEEEEcCCH
Confidence                    1378999999999888873

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.22  E-value=2.4e-11  Score=85.85  Aligned_cols=79  Identities=13%  Similarity=0.086  Sum_probs=60.9

Q ss_pred             HHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC---chHHHHHHHHhCCCCCccEEEECCeEeecch
Q 042938            3 MVTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN---GPQIERALQQLGCQPTVPAVFIGQRLVGGPN   79 (106)
Q Consensus         3 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~---~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~   79 (106)
                      .+.+.++...++.|+.+|||+|+++++++++..-++..+|+|..+.   ..+   ..++ .+.+++|++|+||+.+.|..
T Consensus       191 ~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l~~Vd~d~~d~~~~~~~---la~~-~gI~~vPT~~i~G~~~~G~~  266 (291)
T 3kp9_A          191 GLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQ---ECTE-AGITSYPTWIINGRTYTGVR  266 (291)
T ss_dssp             HHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGSCEEESCSSCSSSCCCH---HHHT-TTCCSTTEEEETTEEEESCC
T ss_pred             HHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHcCEEEEeecCchhhHHH---HHHH-cCCcccCeEEECCEEecCCC
Confidence            3556777888999999999999999999999876677888885432   233   3333 44599999999999999987


Q ss_pred             HHHhHH
Q 042938           80 QVMSLH   85 (106)
Q Consensus        80 ~~~~~~   85 (106)
                      +..++.
T Consensus       267 ~~~~L~  272 (291)
T 3kp9_A          267 SLEALA  272 (291)
T ss_dssp             CHHHHH
T ss_pred             CHHHHH
Confidence            665543

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.22  E-value=2.3e-11  Score=73.88  Aligned_cols=75  Identities=15%  Similarity=0.129  Sum_probs=55.3

Q ss_pred             hhhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC---chHHHHHHHHhCCCCCccEEEECCeEeecchHHH
Q 042938            6 RMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN---GPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVM   82 (106)
Q Consensus         6 ~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~---~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~   82 (106)
                      +......|+.|+.+|||+|+++...|.+..-.+..++++.+..   ..+   ...+++ ..++|+++++|+.+.|..+..
T Consensus         9 ~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~~v~~~~~~~~~~~~~---l~~~~~-V~~~PT~~i~G~~~~G~~~~~   84 (106)
T 3kp8_A            9 AHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQ---ECTEAG-ITSYPTWIINGRTYTGVRSLE   84 (106)
T ss_dssp             HHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSCEEESCTTCTTSCCCH---HHHHTT-CCSSSEEEETTEEEESCCCHH
T ss_pred             HhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCCEEEEecccccchhHH---HHHHcC-CeEeCEEEECCEEecCCCCHH
Confidence            3344556899999999999999999999887777888885432   222   333334 589999999999887776544


Q ss_pred             hH
Q 042938           83 SL   84 (106)
Q Consensus        83 ~~   84 (106)
                      .+
T Consensus        85 ~l   86 (106)
T 3kp8_A           85 AL   86 (106)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.07  E-value=1.7e-10  Score=65.96  Aligned_cols=61  Identities=16%  Similarity=0.231  Sum_probs=45.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCe--Eeec
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQR--LVGG   77 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~--~iGg   77 (106)
                      +..+++|+.+|||+|.++...|++.      ++.+..+|++.+++..      .+++ ..++|++++||+  +.|.
T Consensus         2 m~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~------~~~~-v~~~Pt~~~~G~~~~~G~   70 (85)
T 1nho_A            2 VVNIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKA------IEYG-LMAVPAIAINGVVRFVGA   70 (85)
T ss_dssp             CCCEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGG------GGTC-SSCSSEEEETTTEEEECS
T ss_pred             eEEEEEEECCCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHH------HhCC-ceeeCEEEECCEEEEccC
Confidence            3478999999999999999888663      4677777777654322      2234 488999999998  5564

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.98  E-value=4.3e-10  Score=64.18  Aligned_cols=57  Identities=12%  Similarity=0.236  Sum_probs=42.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeE
Q 042938           11 KPVVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRL   74 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~   74 (106)
                      ..+++|+.+|||+|.++...|++.      ++.+..+|++.+++..+      + .+..++|+++++|+.
T Consensus         4 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~------~-~~v~~~Pt~~~~G~~   66 (85)
T 1fo5_A            4 VKIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAM------E-YGIMAVPTIVINGDV   66 (85)
T ss_dssp             EEEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTT------S-TTTCCSSEEEETTEE
T ss_pred             eEEEEEeCCCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHH------H-CCCcccCEEEECCEE
Confidence            357889999999999998888663      45666777776654322      2 234789999999984

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=98.97  E-value=9.2e-10  Score=68.50  Aligned_cols=51  Identities=27%  Similarity=0.379  Sum_probs=41.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC-chHHHHHHHHhC
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN-GPQIERALQQLG   60 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~-~~~~~~~l~~~~   60 (106)
                      +..|+||+.++||+|++++++|++.|++|+++|+..++. .+++.+.+...+
T Consensus         4 M~~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g   55 (121)
T 3rdw_A            4 MKDVTIYHNPRCSKSRETLALVEQQGITPQVVLYLETPPSVDKLKELLQQLG   55 (121)
T ss_dssp             --CCEEECCTTCHHHHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHHHHHTT
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHHHHhcC
Confidence            456999999999999999999999999999999988654 445666665544

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=98.95  E-value=1.9e-09  Score=66.91  Aligned_cols=46  Identities=13%  Similarity=0.232  Sum_probs=39.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC-CchHHHHHHHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIP-NGPQIERALQQ   58 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~-~~~~~~~~l~~   58 (106)
                      |+||+.++||+|++++.+|++.|++|+.+|+..++ ..+++++.+..
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~l~~   48 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNRHDVVFQEHNIMTSPLSRDELLKILSY   48 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCcHHHHHHHHhh
Confidence            78999999999999999999999999999998764 44556666654

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=98.93  E-value=1.6e-09  Score=69.10  Aligned_cols=49  Identities=12%  Similarity=0.257  Sum_probs=40.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC-CchHHHHHHHHh
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIP-NGPQIERALQQL   59 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~-~~~~~~~~l~~~   59 (106)
                      ..|+||+.++||+|++++++|++.|++|+++|+..++ ..+++.+.+...
T Consensus         2 ~~itiY~~p~C~~crkak~~L~~~gi~~~~idi~~~~~~~~eL~~~~~~~   51 (141)
T 1s3c_A            2 SNITIYHNPASGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIADM   51 (141)
T ss_dssp             -CCEEECCTTCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHcCCCEEEEECCCCCccHHHHHHHhccc
Confidence            4689999999999999999999999999999998764 445566555543

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=98.93  E-value=2.8e-09  Score=66.20  Aligned_cols=49  Identities=8%  Similarity=0.085  Sum_probs=41.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC-chHHHHHHHHhC
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN-GPQIERALQQLG   60 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~-~~~~~~~l~~~~   60 (106)
                      .|+||+.++||+|++++++|++.|++|+++|+..++. .+++.+.+...+
T Consensus         5 ~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g   54 (120)
T 3gkx_A            5 KTLFLQYPACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWIPLSG   54 (120)
T ss_dssp             CCEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHHHHHHT
T ss_pred             EEEEEECCCChHHHHHHHHHHHcCCceEEEecccCcCCHHHHHHHHHHcC
Confidence            5899999999999999999999999999999987654 455777766555

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.90  E-value=2.7e-09  Score=80.02  Aligned_cols=75  Identities=12%  Similarity=0.179  Sum_probs=50.7

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecc----h
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGP----N   79 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~----~   79 (106)
                      ....|++|+++|||+|..+..+|+++.     +.+..+|++..+      +...+++ ..++|++++||+.++.-    +
T Consensus       117 ~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~------~~~~~~~-i~svPt~~i~g~~~~~G~~~~~  189 (521)
T 1hyu_A          117 GDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQ------NEITERN-VMGVPAVFVNGKEFGQGRMTLT  189 (521)
T ss_dssp             SCEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCH------HHHHHTT-CCSSSEEEETTEEEEESCCCHH
T ss_pred             CCcceEEEECCCCcCcHHHHHHHHHHHhHcCceEEEEEechhhH------HHHHHhC-CCccCEEEECCEEEecCCCCHH
Confidence            334589999999999999999887653     444555555332      2333334 58999999999887632    4


Q ss_pred             HHHhHHHhCCc
Q 042938           80 QVMSLHVQNEL   90 (106)
Q Consensus        80 ~~~~~~~~g~L   90 (106)
                      ++.+...++.+
T Consensus       190 ~l~~~l~~~~~  200 (521)
T 1hyu_A          190 EIVAKVDTGAE  200 (521)
T ss_dssp             HHHHHHCCSSC
T ss_pred             HHHHHHhhccc
Confidence            55555555544

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=98.88  E-value=4.9e-09  Score=65.10  Aligned_cols=49  Identities=12%  Similarity=0.291  Sum_probs=41.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC-chHHHHHHHHhC
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN-GPQIERALQQLG   60 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~-~~~~~~~l~~~~   60 (106)
                      -|+||+.++||+|++++++|++.|++|+++|+..++. .+++.+.+...+
T Consensus         4 Mi~iY~~~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g   53 (120)
T 3fz4_A            4 MLTFYEYPKCSTCRRAKAELDDLAWDYDAIDIKKNPPAASLIRNWLENSG   53 (120)
T ss_dssp             SEEEEECSSCHHHHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHHHHHSC
T ss_pred             eEEEEeCCCChHHHHHHHHHHHcCCceEEEEeccCchhHHHHHHHHHHcC
Confidence            5899999999999999999999999999999987644 455766666544

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=98.88  E-value=2.1e-08  Score=60.73  Aligned_cols=72  Identities=14%  Similarity=0.257  Sum_probs=48.6

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhh----cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE--ECCeEe
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICG----FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF--IGQRLV   75 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if--v~g~~i   75 (106)
                      +.+.+..++  ++.|+.+|||+|++....|.+    .+..+..++++...+.....+...+++. .++|+++  .+|+.+
T Consensus        22 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i-~~~Pt~~~~~~G~~~  100 (118)
T 1zma_A           22 AQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGI-PTVPGFVHITDGQIN  100 (118)
T ss_dssp             HHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTC-CSSCEEEEEETTEEE
T ss_pred             HHHHHhCCCeEEEEEECCCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCC-CCCCeEEEEECCEEE
Confidence            444454433  577999999999998777754    4667788888765544444445455554 8899974  478765


Q ss_pred             e
Q 042938           76 G   76 (106)
Q Consensus        76 G   76 (106)
                      .
T Consensus       101 ~  101 (118)
T 1zma_A          101 V  101 (118)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.87  E-value=2.6e-09  Score=64.93  Aligned_cols=67  Identities=15%  Similarity=0.344  Sum_probs=45.1

Q ss_pred             HHHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCe
Q 042938            3 MVTRMVNEKP--VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQR   73 (106)
Q Consensus         3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~   73 (106)
                      .++++++.++  ++.|+.+|||+|.++...|.+.     ++.+..+|++.++   +   ...+++ ...+|++++  +|+
T Consensus        22 ~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~---~---l~~~~~-v~~~Pt~~~~~~G~   94 (114)
T 2oe3_A           22 EFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESP---D---IAKECE-VTAMPTFVLGKDGQ   94 (114)
T ss_dssp             HHHHHHHHCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCH---H---HHHHTT-CCSBSEEEEEETTE
T ss_pred             HHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH---H---HHHHCC-CCcccEEEEEeCCe
Confidence            4566666555  5679999999999998888665     4555566665432   1   333334 478999866  887


Q ss_pred             Eee
Q 042938           74 LVG   76 (106)
Q Consensus        74 ~iG   76 (106)
                      .++
T Consensus        95 ~~~   97 (114)
T 2oe3_A           95 LIG   97 (114)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.83  E-value=9.3e-09  Score=70.36  Aligned_cols=55  Identities=20%  Similarity=0.240  Sum_probs=40.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeE
Q 042938           13 VVIFSKSECCICFSIQTLICGF----------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRL   74 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~   74 (106)
                      +++|+++|||+|.++...|+++          ++.+..+|++.+++      ...+++ ..++|++++||+.
T Consensus       142 vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~------~~~~~~-V~~vPt~~i~G~~  206 (243)
T 2hls_A          142 IETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPD------IADKYG-VMSVPSIAINGYL  206 (243)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHH------HHHHTT-CCSSSEEEETTEE
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHH------HHHHcC-CeeeCeEEECCEE
Confidence            5779999999999999998662          45566666665432      223334 4899999999974

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.79  E-value=2.2e-08  Score=60.20  Aligned_cols=57  Identities=21%  Similarity=0.497  Sum_probs=40.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|.++...|.+..     +.+..+|++..+   +   ...+++ ..++|++++  +|+.++
T Consensus        23 vv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~---~---l~~~~~-v~~~Pt~~~~~~G~~v~   86 (110)
T 2l6c_A           23 IVFFHKNLCPHCKNMEKVLDKFGARAPQVAISSVDSEARP---E---LMKELG-FERVPTLVFIRDGKVAK   86 (110)
T ss_dssp             EEEEECSSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCH---H---HHHHTT-CCSSCEEEEEESSSEEE
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCH---H---HHHHcC-CcccCEEEEEECCEEEE
Confidence            57799999999999999887753     445556665432   1   223334 488999887  998776

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=98.79  E-value=5.2e-09  Score=64.87  Aligned_cols=49  Identities=29%  Similarity=0.471  Sum_probs=41.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG   60 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~   60 (106)
                      .|++|+.++||+|++++++|++.|++|+++|+..+ +..+++.+.+...+
T Consensus         5 ~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~t~~eL~~~l~~~g   54 (119)
T 3f0i_A            5 SVVIYHNPKCSKSRETLALLENQGIAPQVIKYLETSPSVEELKRLYQQLG   54 (119)
T ss_dssp             CCEEECCTTCHHHHHHHHHHHHTTCCCEEECHHHHCCCHHHHHHHHHHHT
T ss_pred             EEEEEECCCChHHHHHHHHHHHcCCceEEEEeccCcCcHHHHHHHHHHcC
Confidence            58999999999999999999999999999999775 44555777776655

>4hoj_A REGF protein; GST, glutathione S-transferase, enzyme function initiative, structural genomics, transferase; HET: GSH; 1.40A {Neisseria gonorrhoeae}

Probab=98.78  E-value=5.7e-08  Score=64.29  Aligned_cols=70  Identities=11%  Similarity=0.166  Sum_probs=56.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      -+++|+.+.||+|.+++-+|..+|++|+.+.||.....+    .+...+...+||++..||..+.....+....
T Consensus         3 Mm~LY~~~~sP~~~rvr~~L~e~gi~~e~~~v~~~~~~~----~~~~~nP~g~vPvL~~~~~~l~ES~aI~~yL   72 (210)
T 4hoj_A            3 MMTLYSGITCPFSHRCRFVLYEKGMDFEIKDIDIYNKPE----DLAVMNPYNQVPVLVERDLVLHESNIINEYI   72 (210)
T ss_dssp             -CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCH----HHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             eEEEecCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCCH----HHHHHCCCCCCcEEEECCEEEeccHHHHHHH
Confidence            478999999999999999999999999999998654433    3344566789999999999988877666543

>4g10_A Glutathione S-transferase homolog; thioredoxin fold; HET: MSE GSH; 1.20A {Sphingomonas paucimobilis}

Probab=98.73  E-value=6.6e-08  Score=66.66  Aligned_cols=74  Identities=12%  Similarity=0.191  Sum_probs=58.0

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhH
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSL   84 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~   84 (106)
                      ....+++|+.+.||+|.+++-+|.++|++|+.+.||......+  ..+.+.+...+||++.+ ||..|.....+...
T Consensus         3 ~p~~~~LY~~~~sP~~~rv~i~L~e~gi~ye~~~vd~~~~~pe--~~~~~~nP~g~VPvL~~d~g~~l~ES~aI~~Y   77 (265)
T 4g10_A            3 EPQELTIYHIPGCPFSERVEIMLELKGLRMKDVEIDISKPRPD--WLLAKTGGTTALPLLDVENGESLKESMVILRY   77 (265)
T ss_dssp             CCCCCEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCCH--HHHHHHTSCCCSCEEECTTSCEEECHHHHHHH
T ss_pred             CCCceEEEecCCChHHHHHHHHHHHhCCCCEEEEeCCCCCCcH--HHHHhcCCCCccceEEECCCeEEeccHHHHHH
Confidence            3557999999999999999999999999999999886543333  23445577789999976 77888777666554

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=98.71  E-value=8.6e-09  Score=66.90  Aligned_cols=66  Identities=12%  Similarity=0.170  Sum_probs=47.2

Q ss_pred             HHHhhhh--CC-CE-EEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EE
Q 042938            3 MVTRMVN--EK-PV-VIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FI   70 (106)
Q Consensus         3 ~~~~~~~--~~-~v-~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv   70 (106)
                      .+++.+.  .. +| +-|+.+||+.|+.+..+|+++.      +.+-.+|||+.++.+.      . .+..++|++  |.
T Consensus        31 ~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~------~-y~V~siPT~~fFk  103 (160)
T 2av4_A           31 AVDQAIVNEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDFNT------M-YELYDPVSVMFFY  103 (160)
T ss_dssp             HHHHHHHHCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTT------T-TTCCSSEEEEEEE
T ss_pred             HHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHH------H-cCCCCCCEEEEEE
Confidence            3455442  33 34 4499999999999999997652      5567889998887544      2 334889997  78


Q ss_pred             CCeEe
Q 042938           71 GQRLV   75 (106)
Q Consensus        71 ~g~~i   75 (106)
                      +|+.+
T Consensus       104 ~G~~v  108 (160)
T 2av4_A          104 RNKHM  108 (160)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            99887

>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A

Probab=98.70  E-value=6.4e-08  Score=64.28  Aligned_cols=71  Identities=10%  Similarity=0.130  Sum_probs=58.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-ECCeEeecchHHHhHHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IGQRLVGGPNQVMSLHV   86 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~~~~~~~~~   86 (106)
                      +.+++|+.+.||+|.+++.+|...|++|+.++++..+.. .   . ...+...++|++. .||..+.+...+.....
T Consensus         2 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~-~---~-~~~~p~~~vP~l~~~~g~~l~eS~aI~~yL~   73 (218)
T 3ir4_A            2 NAMKLYIYDHCPFCVKARMIFGLKNIPVELNVLQNDDEA-T---P-TRMIGQKMVPILQKDDSRYLPESMDIVHYVD   73 (218)
T ss_dssp             CCCEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCCH-H---H-HHHHSSSCSCEEECTTSCEEECHHHHHHHHH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCceEEEECCCcchh-h---h-hhcCCCceeeeEEEeCCeEeeCHHHHHHHHH
Confidence            568999999999999999999999999999999876542 2   2 2335568999999 88999999888776543

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.69  E-value=3.8e-08  Score=57.92  Aligned_cols=57  Identities=19%  Similarity=0.263  Sum_probs=38.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|++....+.+.     ++.+..+|++..+   +   ....++ ..++|++++  +|+.++
T Consensus        24 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~---~~~~~~-v~~~Pt~~~~~~g~~~~   87 (105)
T 3m9j_A           24 VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQ---D---VASESE-VKSMPTFQFFKKGQKVG   87 (105)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCH---H---HHHHTT-CCBSSEEEEEETTEEEE
T ss_pred             EEEEECCCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhH---H---HHHHcC-CCcCcEEEEEECCeEEE
Confidence            5669999999999999888764     4444455554432   2   333334 488999866  887664

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=98.69  E-value=5.4e-08  Score=58.13  Aligned_cols=67  Identities=15%  Similarity=0.188  Sum_probs=40.6

Q ss_pred             HHHhhhhC----CC-EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938            3 MVTRMVNE----KP-VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus         3 ~~~~~~~~----~~-v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      .+.+++..    .+ ++.|+.+|||+|++....|.+.       ++.+..+|++..+   +   ....++ ..++|++++
T Consensus        10 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~---~~~~~~-v~~~Pt~~~   82 (112)
T 3d6i_A           10 QFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENS---E---ISELFE-ISAVPYFII   82 (112)
T ss_dssp             HHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCH---H---HHHHTT-CCSSSEEEE
T ss_pred             HHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCH---H---HHHHcC-CCcccEEEE
Confidence            34555543    33 5669999999999998888643       3444555555432   2   333334 488999865


Q ss_pred             --CCeEee
Q 042938           71 --GQRLVG   76 (106)
Q Consensus        71 --~g~~iG   76 (106)
                        +|+.++
T Consensus        83 ~~~G~~~~   90 (112)
T 3d6i_A           83 IHKGTILK   90 (112)
T ss_dssp             EETTEEEE
T ss_pred             EECCEEEE
Confidence              898654

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=98.68  E-value=8.4e-08  Score=55.95  Aligned_cols=66  Identities=18%  Similarity=0.293  Sum_probs=42.7

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeE
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRL   74 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~   74 (106)
                      +++.+..++  ++.|+.+|||+|.+....|.+.     ++.+..+|++.++   +   ....++ ..++|++++  +|+.
T Consensus         9 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~---~~~~~~-v~~~Pt~~~~~~g~~   81 (104)
T 2e0q_A            9 FDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENP---D---IAARYG-VMSLPTVIFFKDGEP   81 (104)
T ss_dssp             HHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCH---H---HHHHTT-CCSSCEEEEEETTEE
T ss_pred             HHHHHhcCCcEEEEEECCCChhHHHHhHHHHHHHHHcCCceEEEEECCCCH---H---HHHhCC-ccccCEEEEEECCeE
Confidence            445555444  5668999999999998887653     3445555555432   2   333334 478999887  8876


Q ss_pred             ee
Q 042938           75 VG   76 (106)
Q Consensus        75 iG   76 (106)
                      +.
T Consensus        82 ~~   83 (104)
T 2e0q_A           82 VD   83 (104)
T ss_dssp             EE
T ss_pred             hh
Confidence            54

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=98.68  E-value=3.3e-08  Score=61.00  Aligned_cols=67  Identities=15%  Similarity=0.271  Sum_probs=44.3

Q ss_pred             HHHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCe
Q 042938            3 MVTRMVNEKP--VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQR   73 (106)
Q Consensus         3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~   73 (106)
                      .+.+++...+  ++.|+.+|||+|.++...|.+.     ++.+..+|++..+   +   ....++ ..++|++++  +|+
T Consensus        29 ~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~---~---l~~~~~-v~~~Pt~~i~~~G~  101 (125)
T 1r26_A           29 QFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNS---E---IVSKCR-VLQLPTFIIARSGK  101 (125)
T ss_dssp             HHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCH---H---HHHHTT-CCSSSEEEEEETTE
T ss_pred             HHHHHHccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCH---H---HHHHcC-CCcccEEEEEeCCe
Confidence            3455555443  5679999999999998888663     4555666665432   1   233334 488999877  897


Q ss_pred             Eee
Q 042938           74 LVG   76 (106)
Q Consensus        74 ~iG   76 (106)
                      .+.
T Consensus       102 ~~~  104 (125)
T 1r26_A          102 MLG  104 (125)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=98.67  E-value=1e-07  Score=57.08  Aligned_cols=67  Identities=19%  Similarity=0.307  Sum_probs=44.1

Q ss_pred             HHHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCe
Q 042938            3 MVTRMVNEKP--VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQR   73 (106)
Q Consensus         3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~   73 (106)
                      .+++++..++  ++.|+.+|||+|++....|.+.     ++.+..+|++..+   +   ...+++ ..++|++++  +|+
T Consensus        16 ~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~---~---l~~~~~-v~~~Pt~~~~~~G~   88 (109)
T 3f3q_A           16 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELG---D---VAQKNE-VSAMPTLLLFKNGK   88 (109)
T ss_dssp             HHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCH---H---HHHHTT-CCSSSEEEEEETTE
T ss_pred             HHHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCH---H---HHHHcC-CCccCEEEEEECCE
Confidence            4566666555  4559999999999999888664     3445555655432   2   223334 488999865  887


Q ss_pred             Eee
Q 042938           74 LVG   76 (106)
Q Consensus        74 ~iG   76 (106)
                      .+.
T Consensus        89 ~~~   91 (109)
T 3f3q_A           89 EVA   91 (109)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            655

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.66  E-value=2.6e-08  Score=59.82  Aligned_cols=56  Identities=18%  Similarity=0.356  Sum_probs=37.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      ++.|+.+|||+|.+....|.+.     ++.+..+|++..+   +   ....++ ...+|++++  +|+.+
T Consensus        32 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~---~---~~~~~~-v~~~Pt~~~~~~g~~~   94 (118)
T 2vm1_A           32 IIDFTASWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELK---D---VAEAYN-VEAMPTFLFIKDGEKV   94 (118)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSH---H---HHHHTT-CCSBSEEEEEETTEEE
T ss_pred             EEEEECCCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCH---H---HHHHcC-CCcCcEEEEEeCCeEE
Confidence            5669999999999998888654     3445555555432   2   333344 488999866  88764

>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase superfamily, CLIC4, NCC27, chloride ION channel, metal transport; 1.80A {Homo sapiens} PDB: 2d2z_A

Probab=98.66  E-value=2.1e-07  Score=64.30  Aligned_cols=76  Identities=16%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             hhhhCCCEEEE--------EcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeec
Q 042938            6 RMVNEKPVVIF--------SKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGG   77 (106)
Q Consensus         6 ~~~~~~~v~vf--------~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg   77 (106)
                      +--++..+++|        +.+.||+|.+++-+|...|++|+.+.++......+    +...+...+||++..||..+..
T Consensus        12 ~~~~~~~i~ly~~~~~~~~~~~~~p~~~rv~~~L~~~gi~ye~~~v~~~~~~~~----~~~~nP~gkVPvL~~~g~~l~E   87 (267)
T 2ahe_A           12 EEDKEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKRKPAD----LQNLAPGTHPPFITFNSEVKTD   87 (267)
T ss_dssp             ----CCCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTSCCHH----HHHHSTTCCSCEEEETTEEECC
T ss_pred             ccccCCCEEEEEecCCCccCCCCCchHHHHHHHHHHcCCCCEEEEeCcccChHH----HHHhCCCCCCCEEEECCEEecC
Confidence            33456689999        78899999999999999999999998886433222    3334666799999999999988


Q ss_pred             chHHHhHH
Q 042938           78 PNQVMSLH   85 (106)
Q Consensus        78 ~~~~~~~~   85 (106)
                      ...+....
T Consensus        88 S~aI~~YL   95 (267)
T 2ahe_A           88 VNKIEEFL   95 (267)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87776654

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=98.65  E-value=6.8e-08  Score=57.34  Aligned_cols=66  Identities=15%  Similarity=0.405  Sum_probs=41.9

Q ss_pred             HHhhh-hCC-C-EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CC
Q 042938            4 VTRMV-NEK-P-VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQ   72 (106)
Q Consensus         4 ~~~~~-~~~-~-v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g   72 (106)
                      +.+.+ ... + ++.|+.+|||+|+++...|.+.    +  +.+..+|++..+   +   ...+++ ..++|++++  +|
T Consensus        14 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~---l~~~~~-v~~~Pt~~~~~~g   86 (111)
T 3gnj_A           14 FEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEK---T---LFQRFS-LKGVPQILYFKDG   86 (111)
T ss_dssp             HHHHHTTSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCH---H---HHHHTT-CCSSCEEEEEETT
T ss_pred             HHHHHHhcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCceEEEEEECCcCh---h---HHHhcC-CCcCCEEEEEECC
Confidence            44555 333 3 5679999999999998888654    2  445555655432   2   233334 488998755  88


Q ss_pred             eEee
Q 042938           73 RLVG   76 (106)
Q Consensus        73 ~~iG   76 (106)
                      +.++
T Consensus        87 ~~~~   90 (111)
T 3gnj_A           87 EYKG   90 (111)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7653

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.65  E-value=4.3e-08  Score=59.44  Aligned_cols=67  Identities=15%  Similarity=0.173  Sum_probs=41.9

Q ss_pred             HHHhhhh--CC-C-EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--C
Q 042938            3 MVTRMVN--EK-P-VVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--G   71 (106)
Q Consensus         3 ~~~~~~~--~~-~-v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~   71 (106)
                      .+++++.  .. . ++.|+.+|||+|++....|.+..     +.+..+|+|..+   +   ...+++ ...+|++++  +
T Consensus        21 ~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~---~---l~~~~~-v~~~Pt~~~~~~   93 (116)
T 3qfa_C           21 AFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQ---D---VASECE-VKSMPTFQFFKK   93 (116)
T ss_dssp             HHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTH---H---HHHHTT-CCSSSEEEEESS
T ss_pred             HHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH---H---HHHHcC-CccccEEEEEeC
Confidence            3445554  33 3 45589999999999998887753     334445554332   2   333334 488999866  7


Q ss_pred             CeEee
Q 042938           72 QRLVG   76 (106)
Q Consensus        72 g~~iG   76 (106)
                      |+.+.
T Consensus        94 G~~~~   98 (116)
T 3qfa_C           94 GQKVG   98 (116)
T ss_dssp             SSEEE
T ss_pred             CeEEE
Confidence            76543

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=98.61  E-value=1.7e-07  Score=56.08  Aligned_cols=66  Identities=12%  Similarity=0.197  Sum_probs=43.5

Q ss_pred             HHHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCe
Q 042938            3 MVTRMVNEKP--VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQR   73 (106)
Q Consensus         3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~   73 (106)
                      .++++++.++  ++.|+.+|||+|.++...|.+.     ++.+..+|++..+   +   ...+++ ...+|++++  +|+
T Consensus        18 ~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~---~---~~~~~~-v~~~Pt~~~~~~G~   90 (112)
T 1syr_A           18 EFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVS---E---VTEKEN-ITSMPTFKVYKNGS   90 (112)
T ss_dssp             HHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTH---H---HHHHTT-CCSSSEEEEEETTE
T ss_pred             HHHHHHccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCH---H---HHHHcC-CCcccEEEEEECCc
Confidence            3555665554  4569999999999999888663     4555556665432   1   333334 488998866  887


Q ss_pred             Ee
Q 042938           74 LV   75 (106)
Q Consensus        74 ~i   75 (106)
                      .+
T Consensus        91 ~~   92 (112)
T 1syr_A           91 SV   92 (112)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=98.61  E-value=2.1e-07  Score=54.44  Aligned_cols=67  Identities=18%  Similarity=0.270  Sum_probs=42.8

Q ss_pred             HHHhhhh---CCC-EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--C
Q 042938            3 MVTRMVN---EKP-VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--G   71 (106)
Q Consensus         3 ~~~~~~~---~~~-v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~   71 (106)
                      .+++.+.   ..+ ++.|+.+|||+|.+....|.+.     ++.+..+|++..+   +   ....++ ..++|++++  +
T Consensus         9 ~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~---~---~~~~~~-v~~~Pt~~~~~~   81 (104)
T 2vim_A            9 DLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNE---E---AAAKYS-VTAMPTFVFIKD   81 (104)
T ss_dssp             HHHHHHHTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCH---H---HHHHTT-CCSSSEEEEEET
T ss_pred             HHHHHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCH---H---HHHHcC-CccccEEEEEeC
Confidence            3455554   333 4559999999999998888664     4555566665432   2   223334 478999866  8


Q ss_pred             CeEee
Q 042938           72 QRLVG   76 (106)
Q Consensus        72 g~~iG   76 (106)
                      |+.+.
T Consensus        82 g~~~~   86 (104)
T 2vim_A           82 GKEVD   86 (104)
T ss_dssp             TEEEE
T ss_pred             CcEEE
Confidence            87653

>4hi7_A GI20122; GST, glutathione S-transferase, enzyme function initiative, structural genomics, unknown function; HET: GSH; 1.25A {Drosophila mojavensis}

Probab=98.60  E-value=3.4e-07  Score=61.22  Aligned_cols=74  Identities=11%  Similarity=0.106  Sum_probs=56.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .+.++|+.+.||+|.+++-+|...|++|+.+.||.......-.+++ +.+...+||++..||..+.....+....
T Consensus         2 ~kpiLY~~~~Sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~-~~nP~g~vP~L~d~~~~l~eS~aI~~YL   75 (228)
T 4hi7_A            2 VKPILYGIDASPPVRAVKLTLAALQLPYDYKIVNLMNKEQHSEEYL-KKNPQHTVPLLEDGDANIADSHAIMAYL   75 (228)
T ss_dssp             -CCEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHH-HHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CceEEEECCCChHHHHHHHHHHHhCCCCEEEEecCCCcccCCHHHH-HhCCCCceeeEEECCEEEechHHHHHHH
Confidence            4568999999999999999999999999998887643321111333 4566679999999999998887776643

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=98.60  E-value=9.2e-08  Score=56.71  Aligned_cols=64  Identities=11%  Similarity=0.189  Sum_probs=38.7

Q ss_pred             HhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE--ECCeEe
Q 042938            5 TRMVNEKP--VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF--IGQRLV   75 (106)
Q Consensus         5 ~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if--v~g~~i   75 (106)
                      ++.++.++  ++.|+.+|||+|++....|.+.     ++.+..+|++.+++..      .+++ ..++|+++  -+|+.+
T Consensus        12 ~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~------~~~~-v~~~Pt~~~~~~G~~~   84 (105)
T 4euy_A           12 ATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIA------GRYA-VFTGPTVLLFYNGKEI   84 (105)
T ss_dssp             SSSTTCSSEEEEEEEESSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC----------------CCCCEEEEEETTEEE
T ss_pred             HHHHhcCCCEEEEEeCCCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHH------HhcC-CCCCCEEEEEeCCeEE
Confidence            34454444  4558999999999999888664     3445556666654322      2224 47889864  488776

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.59  E-value=1.5e-07  Score=59.63  Aligned_cols=57  Identities=14%  Similarity=0.278  Sum_probs=39.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|++....|.++     ++.+..+|++..+   +   ...+++ ...+|++++  +|+.+.
T Consensus        36 vv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~---~---l~~~~~-v~~~Pt~~~~~~G~~~~   99 (153)
T 2wz9_A           36 VVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVP---E---VSEKYE-ISSVPTFLFFKNSQKID   99 (153)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSH---H---HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCH---H---HHHHcC-CCCCCEEEEEECCEEEE
Confidence            5679999999999998888665     4556666666532   1   333334 488999876  997643

>2r4v_A XAP121, chloride intracellular channel protein 2; chloride intracellular channels, CLIC2, pore-forming protein ryanodine receptor, chloride channel; HET: GSH; 1.85A {Homo sapiens} PDB: 2r5g_A 2per_A*

Probab=98.59  E-value=2.5e-07  Score=62.92  Aligned_cols=72  Identities=15%  Similarity=0.228  Sum_probs=53.7

Q ss_pred             CCCEEEE--------EcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHH
Q 042938           10 EKPVVIF--------SKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus        10 ~~~v~vf--------~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~   81 (106)
                      +..+++|        +.+.||+|.+++-+|...|++|+.+.++......    .+...+...+||++..||..+.....+
T Consensus        11 ~~~i~ly~~~~~~~~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~----~~~~~nP~g~vP~L~~~g~~l~ES~aI   86 (247)
T 2r4v_A           11 DPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMTRKPE----ELKDLAPGTNPPFLVYNKELKTDFIKI   86 (247)
T ss_dssp             CCCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECCC--------------CCSSSCEEEETTEEECCHHHH
T ss_pred             CCCEEEEEecCcccccCCCChhHHHHHHHHHHcCCCcEEEEcCcccchH----HHHHhCCCCCCCEEEECCEeccCHHHH
Confidence            4569999        8899999999999999999999999887642212    233345567999999999999888777


Q ss_pred             HhHH
Q 042938           82 MSLH   85 (106)
Q Consensus        82 ~~~~   85 (106)
                      ....
T Consensus        87 ~~YL   90 (247)
T 2r4v_A           87 EEFL   90 (247)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6644

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=98.58  E-value=5.2e-08  Score=59.04  Aligned_cols=57  Identities=16%  Similarity=0.293  Sum_probs=38.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|.+....|.+.     ++.+..+|++.++   +   ...+++ ..++|++++  +|+.++
T Consensus        38 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~---~---~~~~~~-v~~~Pt~~~~~~G~~~~  101 (122)
T 2vlu_A           38 VIDFTASWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELK---P---IAEQFS-VEAMPTFLFMKEGDVKD  101 (122)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCH---H---HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCH---H---HHHHcC-CCcccEEEEEeCCEEEE
Confidence            5679999999999998888663     3445555555432   2   333334 488999876  887653

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=98.58  E-value=1.6e-07  Score=55.22  Aligned_cols=66  Identities=17%  Similarity=0.309  Sum_probs=41.6

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCe
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQR   73 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~   73 (106)
                      +.++++.++  ++.|+.+|||+|.+....|.+.    +  +.+..+|++.++   +   ....++ ..++|++++  +|+
T Consensus        11 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~---~~~~~~-v~~~Pt~~~~~~g~   83 (109)
T 2yzu_A           11 FDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENP---K---TAMRYR-VMSIPTVILFKDGQ   83 (109)
T ss_dssp             HHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCH---H---HHHHTT-CCSSSEEEEEETTE
T ss_pred             HHHHhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCH---h---HHHhCC-CCcCCEEEEEeCCc
Confidence            345555443  5668999999999998877654    2  334444554432   2   333334 488999877  887


Q ss_pred             Eee
Q 042938           74 LVG   76 (106)
Q Consensus        74 ~iG   76 (106)
                      .+.
T Consensus        84 ~~~   86 (109)
T 2yzu_A           84 PVE   86 (109)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            643

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=98.58  E-value=2.5e-07  Score=54.77  Aligned_cols=57  Identities=16%  Similarity=0.195  Sum_probs=38.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE--ECCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF--IGQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if--v~g~~iG   76 (106)
                      ++.|+.+|||+|+++...|.+.     ++.+..+|++.++   +   ...+++ ..++|+++  .+|+.++
T Consensus        25 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~---~~~~~~-v~~~Pt~~~~~~G~~~~   88 (107)
T 1gh2_A           25 VVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQ---G---TAATNN-ISATPTFQFFRNKVRID   88 (107)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSH---H---HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEECCCChhhHHHHHHHHHHHHHCCCcEEEEEECccCH---H---HHHhcC-CCcccEEEEEECCeEEE
Confidence            5679999999999999888664     4555666666432   2   223334 48899874  4887554

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=98.57  E-value=2.9e-07  Score=54.13  Aligned_cols=65  Identities=20%  Similarity=0.403  Sum_probs=41.1

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCe
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQR   73 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~   73 (106)
                      +.+++..++  ++.|+.+|||+|++....|.+.    +  +.+..+|++.++   +   ...+++ ..++|++++  +|+
T Consensus        10 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~---~---~~~~~~-v~~~Pt~~~~~~G~   82 (105)
T 1nsw_A           10 FQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP---E---TTSQFG-IMSIPTLILFKGGR   82 (105)
T ss_dssp             HHHHHSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCH---H---HHHHTT-CCSSSEEEEEETTE
T ss_pred             HHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCH---H---HHHHcC-CccccEEEEEeCCe
Confidence            445554443  5678999999999998877653    2  344445554432   2   233334 488999877  887


Q ss_pred             Ee
Q 042938           74 LV   75 (106)
Q Consensus        74 ~i   75 (106)
                      .+
T Consensus        83 ~~   84 (105)
T 1nsw_A           83 PV   84 (105)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=98.56  E-value=4.5e-07  Score=53.96  Aligned_cols=56  Identities=20%  Similarity=0.371  Sum_probs=36.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      ++.|+.+|||+|.+....|.+.    +  +.+..+|++.++   +   ...+++ ...+|++++  +|+.+
T Consensus        27 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~---~---~~~~~~-v~~~Pt~~~~~~G~~~   90 (112)
T 1t00_A           27 LVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENP---G---TAAKYG-VMSIPTLNVYQGGEVA   90 (112)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---H---HHHHTT-CCSSSEEEEEETTEEE
T ss_pred             EEEEECCCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCH---H---HHHhCC-CCcccEEEEEeCCEEE
Confidence            6779999999999988777553    2  334445554432   2   233334 478999866  88764

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=98.56  E-value=1.1e-07  Score=55.99  Aligned_cols=66  Identities=14%  Similarity=0.227  Sum_probs=41.3

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR   73 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~   73 (106)
                      +++++..++  ++.|+.+|||+|.+....|.+.    +  +.+..+|++..+   +   ....++ ..++|++  |.+|+
T Consensus        14 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~---~~~~~~-i~~~Pt~~~~~~g~   86 (109)
T 3tco_A           14 FDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQ---K---IADKYS-VLNIPTTLIFVNGQ   86 (109)
T ss_dssp             HHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCH---H---HHHHTT-CCSSSEEEEEETTE
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCH---H---HHHhcC-cccCCEEEEEcCCc
Confidence            455555454  5669999999999998888654    3  334445554332   2   233334 4889995  45887


Q ss_pred             Eee
Q 042938           74 LVG   76 (106)
Q Consensus        74 ~iG   76 (106)
                      .+.
T Consensus        87 ~~~   89 (109)
T 3tco_A           87 LVD   89 (109)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=98.55  E-value=1.3e-07  Score=58.28  Aligned_cols=79  Identities=13%  Similarity=0.141  Sum_probs=51.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecchHHHh--
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGPNQVMS--   83 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~~~~~~--   83 (106)
                      ++-|+.+||+.|+.+...|+++     ++.|-.+|+|...         .+ .+..++|++  |-||+.+..+.-...  
T Consensus        27 vv~F~a~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~~---------~~-~~v~~~PT~~~fk~G~~v~~~~G~~~~g   96 (118)
T 3evi_A           27 IIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKAIVNSCI---------QH-YHDNCLPTIFVYKNGQIEAKFIGIIECG   96 (118)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGTS---------TT-CCGGGCSEEEEEETTEEEEEEESTTTTT
T ss_pred             EEEEeCCCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHhH---------HH-CCCCCCCEEEEEECCEEEEEEeChhhhC
Confidence            4458999999999999888764     3556667777641         11 234788886  679976543322211  


Q ss_pred             --HHHhCCchHHHHhcCcee
Q 042938           84 --LHVQNELGPLLVRAGAIW  101 (106)
Q Consensus        84 --~~~~g~L~~~L~~~g~~~  101 (106)
                        -....+|+.+|.+.|++.
T Consensus        97 g~~~~~~~le~~L~~~g~i~  116 (118)
T 3evi_A           97 GINLKLEELEWKLAEVGAIQ  116 (118)
T ss_dssp             CSSCCHHHHHHHHHTTTSCC
T ss_pred             CCCCCHHHHHHHHHHcCCcC
Confidence              112346788899888863

>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1; glutathione-S-tranferase superfamily, chloride ION channel, metal transport; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A 3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A

Probab=98.55  E-value=7.6e-07  Score=60.34  Aligned_cols=72  Identities=17%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             CCCEEEEEcC--------CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHH
Q 042938           10 EKPVVIFSKS--------ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus        10 ~~~v~vf~~~--------~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~   81 (106)
                      +.++++|.++        .||+|.+++-+|...|++|+.+.++......+   + ...+...+||++..||..+.....+
T Consensus         5 ~~~~~Ly~~~~~~g~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~---~-~~~nP~g~VPvL~~~g~~l~eS~aI   80 (241)
T 1k0m_A            5 QPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTET---V-QKLCPGGELPFLLYGTEVHTDTNKI   80 (241)
T ss_dssp             -CCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTSCCHH---H-HHHCTTCCSSEEEETTEEEECHHHH
T ss_pred             CCceEEEeecCCCCCCCCCCHHHHHHHHHHHHcCCccEEEEcCCcccHHH---H-HHhCCCCCCCEEEECCEEecCHHHH
Confidence            5579999887        89999999999999999999998886533232   3 3346668999999999988888777


Q ss_pred             HhHH
Q 042938           82 MSLH   85 (106)
Q Consensus        82 ~~~~   85 (106)
                      ....
T Consensus        81 ~~yL   84 (241)
T 1k0m_A           81 EEFL   84 (241)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6644

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=98.54  E-value=2.7e-07  Score=55.54  Aligned_cols=57  Identities=21%  Similarity=0.325  Sum_probs=38.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|++....|.+.    ++.+..+|++..+   +   ...+++ ..++|++++  +|+.++
T Consensus        37 vv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~vd~~~~~---~---~~~~~~-v~~~Pt~~~~~~G~~~~   99 (117)
T 2xc2_A           37 VVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVDKLE---E---TARKYN-ISAMPTFIAIKNGEKVG   99 (117)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHTTSSSEEEEEETTTSH---H---HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEECCCCHhHHHHhHHHHHHHHHcCcEEEEEECCccH---H---HHHHcC-CCccceEEEEeCCcEEE
Confidence            5679999999999999888765    3344444554322   1   333334 488999876  887654

>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A*

Probab=98.53  E-value=6.9e-07  Score=60.37  Aligned_cols=78  Identities=10%  Similarity=0.101  Sum_probs=58.2

Q ss_pred             hhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938            7 MVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus         7 ~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +..+.++++|+.+.||+|.+++-+|...|++|+.+.|+.......- +.+...+...++|++..||..+.....+....
T Consensus        21 Ms~~~~~~Ly~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~-~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~YL   98 (243)
T 3qav_A           21 MATTSKPFVYWGSGSPPCWKVLLVLQEKKIDYDEKIISFSKKEHKS-EEILELNPRGQVPTFTDGDVVVNESTAICMYL   98 (243)
T ss_dssp             ----CCCEEEECTTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGS-HHHHHHCTTCCSCEEEETTEEECSHHHHHHHH
T ss_pred             ccccCccEEEeCCCCcchHHHHHHHHHcCCCceEEEecCcccccCC-HHHHhhCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            3445689999999999999999999999999999988754321111 23344566689999999999888887776543

>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET: CIT; 2.02A {Yersinia pestis}

Probab=98.53  E-value=1.1e-06  Score=58.15  Aligned_cols=72  Identities=13%  Similarity=0.139  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ...+++|+.+.||+|.+++-+|...|++|+.+.++.....++    +.+.+...++|++..||..+.+...+....
T Consensus         8 ~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~----~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   79 (213)
T 1yy7_A            8 RSVMTLFSGPTDIFSHQVRIVLAEKGVSVEIEQVEADNLPQD----LIDLNPYRTVPTLVDRELTLYESRIIMEYL   79 (213)
T ss_dssp             SSSEEEEECTTCHHHHHHHHHHHHHTCCEEEEECCTTSCCHH----HHHHCTTCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CCceEEEcCCCChhHHHHHHHHHHcCCCCeEEeCCcccCcHH----HHHHCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            456899999999999999999999999999999886433222    233465679999999999998887776654

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=98.53  E-value=1.3e-07  Score=55.60  Aligned_cols=66  Identities=17%  Similarity=0.291  Sum_probs=41.1

Q ss_pred             HHhhhhCCC-EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeE
Q 042938            4 VTRMVNEKP-VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRL   74 (106)
Q Consensus         4 ~~~~~~~~~-v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~   74 (106)
                      +.+.++..+ ++.|+.+|||+|.+....+.+.    +  +.+..+|++.++   +   ....++ ...+|++++  +|+.
T Consensus        13 ~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~---~~~~~~-v~~~Pt~~~~~~G~~   85 (106)
T 3die_A           13 FDSKVESGVQLVDFWATACGPCKMIAPVLEELAADYEGKADILKLDVDENP---S---TAAKYE-VMSIPTLIVFKDGQP   85 (106)
T ss_dssp             HHHHSCSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---H---HHHHTT-CCSBSEEEEEETTEE
T ss_pred             HHHHhcCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCH---H---HHHhCC-CcccCEEEEEeCCeE
Confidence            344443333 5668999999999998888654    3  344445554432   1   233334 488999865  8876


Q ss_pred             ee
Q 042938           75 VG   76 (106)
Q Consensus        75 iG   76 (106)
                      ++
T Consensus        86 ~~   87 (106)
T 3die_A           86 VD   87 (106)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae}

Probab=98.53  E-value=1.1e-06  Score=58.27  Aligned_cols=70  Identities=17%  Similarity=0.200  Sum_probs=57.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .+++|+.+.||+|.+++-+|...|++|+.+.++.....++    +...+...++|++..||..+.+...+....
T Consensus         6 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~----~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   75 (216)
T 3lyk_A            6 VMTLFSNKDDIYCHQVKIVLAEKGVLYENAEVDLQALPED----LMELNPYGTVPTLVDRDLVLFNSRIIMEYL   75 (216)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHH----HHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             eEEEEeCCCChhHHHHHHHHHHcCCCcEEEeCCcccCcHH----HHhhCCCCCcCeEEECCeEecCHHHHHHHH
Confidence            4899999999999999999999999999999887643333    334466689999999999998888776643

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.53  E-value=4.3e-07  Score=55.24  Aligned_cols=66  Identities=15%  Similarity=0.246  Sum_probs=43.1

Q ss_pred             HHHhhhhCCC--EEEEEcCCCchHHHHHHHHhhcC-------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--C
Q 042938            3 MVTRMVNEKP--VVIFSKSECCICFSIQTLICGFG-------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--G   71 (106)
Q Consensus         3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~-------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~   71 (106)
                      .++++++..+  ++.|+.+|||+|..+...|.+..       +.+..+|+|..+   +   ....++. .++|++++  +
T Consensus        25 ~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~---~---~~~~~~v-~~~Pt~~~~~~   97 (121)
T 2j23_A           25 QFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQS---Q---IAQEVGI-RAMPTFVFFKN   97 (121)
T ss_dssp             HHHHHHSSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCH---H---HHHHHTC-CSSSEEEEEET
T ss_pred             HHHHHHcCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCH---H---HHHHcCC-CcccEEEEEEC
Confidence            4556665443  56789999999999998887642       444555555432   2   3333454 78998765  8


Q ss_pred             CeEe
Q 042938           72 QRLV   75 (106)
Q Consensus        72 g~~i   75 (106)
                      |+.+
T Consensus        98 G~~~  101 (121)
T 2j23_A           98 GQKI  101 (121)
T ss_dssp             TEEE
T ss_pred             CeEE
Confidence            8764

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.52  E-value=4.8e-07  Score=50.46  Aligned_cols=55  Identities=11%  Similarity=0.262  Sum_probs=37.8

Q ss_pred             EEEEcCCCchHHHHHHHHhh----cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938           14 VIFSKSECCICFSIQTLICG----FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      +.|+.+|||+|+.+...|++    ++..+..+.+|   + .+   ...+++ ..++|+++++|+.+.
T Consensus         4 v~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~---~-~~---~~~~~~-v~~~Pt~~~~G~~~~   62 (77)
T 1ilo_A            4 IQIYGTGCANCQMLEKNAREAVKELGIDAEFEKIK---E-MD---QILEAG-LTALPGLAVDGELKI   62 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---S-HH---HHHHHT-CSSSSCEEETTEEEE
T ss_pred             EEEEcCCChhHHHHHHHHHHHHHHcCCceEEEEec---C-HH---HHHHCC-CCcCCEEEECCEEEE
Confidence            34555799999998877654    45567777777   1 22   333345 489999999998653

>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*

Probab=98.52  E-value=6.5e-07  Score=60.22  Aligned_cols=72  Identities=11%  Similarity=-0.009  Sum_probs=58.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLH   85 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~   85 (106)
                      +..+++|+.+.||+|.+++-+|...|++|+.+.++.....++   + ...+...++|++.. ||..+.....+....
T Consensus        21 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~---~-~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL   93 (241)
T 3vln_A           21 EGSIRIYSMRFSPFAERTRLVLKAKGIRHEVININLKNKPEW---F-FKKNPFGLVPVLENSQGQLIYESAITCEYL   93 (241)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHHHHTCCEEEEEBCTTSCCTT---H-HHHCTTCCSCEEECTTCCEEESHHHHHHHH
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHHcCCCCeEEecCcccCCHH---H-HHhCCCCCCCEEEECCCcEEEcHHHHHHHH
Confidence            457999999999999999999999999999999886543332   2 23466689999999 898888887776643

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=98.52  E-value=2.8e-07  Score=55.42  Aligned_cols=66  Identities=17%  Similarity=0.207  Sum_probs=40.9

Q ss_pred             HHhhhhC--CC-E-EEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938            4 VTRMVNE--KP-V-VIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ   72 (106)
Q Consensus         4 ~~~~~~~--~~-v-~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g   72 (106)
                      +++.+..  ++ | +-|+.+||++|+.+...+.+.     ++.+-.+|+|..+   +   ...+++ ..++|++  |.+|
T Consensus        11 f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~---~---l~~~~~-V~~~PT~~~~~~G   83 (105)
T 3zzx_A           11 FTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECE---D---IAQDNQ-IACMPTFLFMKNG   83 (105)
T ss_dssp             HHHHHHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCH---H---HHHHTT-CCBSSEEEEEETT
T ss_pred             HHHHHHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCCeEEEEEecccCH---H---HHHHcC-CCeecEEEEEECC
Confidence            4455532  33 3 339999999999999888665     2334455555432   2   233334 4889986  5688


Q ss_pred             eEee
Q 042938           73 RLVG   76 (106)
Q Consensus        73 ~~iG   76 (106)
                      +.++
T Consensus        84 ~~v~   87 (105)
T 3zzx_A           84 QKLD   87 (105)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7543

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.52  E-value=3.7e-07  Score=54.25  Aligned_cols=57  Identities=18%  Similarity=0.252  Sum_probs=37.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|.+....|.+.      ++.+..+|++..+   +   ....++. .++|++++  +|+.+.
T Consensus        28 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~---~---~~~~~~v-~~~Pt~~~~~~G~~~~   92 (112)
T 1ep7_A           28 VVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA---A---VAEAAGI-TAMPTFHVYKDGVKAD   92 (112)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTH---H---HHHHHTC-CBSSEEEEEETTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchH---H---HHHHcCC-CcccEEEEEECCeEEE
Confidence            5679999999999998888654      2444444554322   2   3333454 78999866  887643

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=98.52  E-value=3.8e-07  Score=56.61  Aligned_cols=66  Identities=15%  Similarity=0.184  Sum_probs=41.2

Q ss_pred             HHHhhhhCC----CEEEEEcCCCchHHHHHHHHhhcCCCc--eEEEcccCCCchHHHHHHHHhCCCCCccEEEE----CC
Q 042938            3 MVTRMVNEK----PVVIFSKSECCICFSIQTLICGFGANP--TVYELDQIPNGPQIERALQQLGCQPTVPAVFI----GQ   72 (106)
Q Consensus         3 ~~~~~~~~~----~v~vf~~~~Cp~C~~~~~~L~~~~v~~--~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv----~g   72 (106)
                      .+++++...    -++.|+.+|||+|+++...|.+..-.|  ..+.||.+.. .+   ...+++ ..++|++++    +|
T Consensus        30 ~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~-~~---l~~~~~-v~~~Pt~~~~~~~~g  104 (133)
T 3cxg_A           30 SLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYYYVTLVDIDVDIH-PK---LNDQHN-IKALPTFEFYFNLNN  104 (133)
T ss_dssp             HHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTEECEEEEEETTTC-HH---HHHHTT-CCSSSEEEEEEEETT
T ss_pred             HHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCEEEEEEeccch-HH---HHHhcC-CCCCCEEEEEEecCC
Confidence            345556543    256799999999999999998765332  3333333322 12   223334 488999864    88


Q ss_pred             e
Q 042938           73 R   73 (106)
Q Consensus        73 ~   73 (106)
                      +
T Consensus       105 ~  105 (133)
T 3cxg_A          105 E  105 (133)
T ss_dssp             E
T ss_pred             C
Confidence            7

>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH; 1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5

Probab=98.52  E-value=1.2e-06  Score=58.70  Aligned_cols=73  Identities=12%  Similarity=0.029  Sum_probs=58.1

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCC-CCccEEEECCeEeecchHHHhHH
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQ-PTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~-~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .+.++++|+.+.||+|.+++-+|...|++|+.+.++......+   + ...+.. .++|++..||..+.....+....
T Consensus         3 ~~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~---~-~~~nP~~g~vP~L~~~g~~l~eS~aI~~yL   76 (231)
T 1oyj_A            3 EEKELVLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDL---L-LRSNPVHRKIPVLLHAGRPVSESLVILQYL   76 (231)
T ss_dssp             CSCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHH---H-HHHSTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCCceEEEeCCCChHHHHHHHHHHHCCCCCeEEecCcccCCHH---H-HhhCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            3568999999999999999999999999999998886432222   3 334554 68999999999998887776644

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=98.52  E-value=4.5e-07  Score=53.54  Aligned_cols=56  Identities=18%  Similarity=0.332  Sum_probs=38.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      ++.|+.+|||+|++....|.+.    +  +.+..+|++.+++      ...+++ ...+|++++  +|+.+
T Consensus        24 ~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~-v~~~Pt~~~~~~G~~~   87 (108)
T 2trx_A           24 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG------TAPKYG-IRGIPTLLLFKNGEVA   87 (108)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT------HHHHTT-CCSSSEEEEEETTEEE
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH------HHHHcC-CcccCEEEEEeCCEEE
Confidence            5679999999999998887653    2  3444556655443      222334 478999877  88764

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=98.51  E-value=4.5e-07  Score=54.29  Aligned_cols=66  Identities=12%  Similarity=0.182  Sum_probs=43.0

Q ss_pred             HHhhhhCCC-EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeE
Q 042938            4 VTRMVNEKP-VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRL   74 (106)
Q Consensus         4 ~~~~~~~~~-v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~   74 (106)
                      +.+.+...+ ++.|+.+|||+|.+....|.+.      ++.+..+|+|.+++      ...+++ ..++|++++  +|+.
T Consensus        11 ~~~~~~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~------l~~~~~-v~~~Pt~~~~~~G~~   83 (112)
T 2voc_A           11 FSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQE------TAGKYG-VMSIPTLLVLKDGEV   83 (112)
T ss_dssp             HHHHHSSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCS------HHHHTT-CCSBSEEEEEETTEE
T ss_pred             HHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH------HHHHcC-CCcccEEEEEeCCEE
Confidence            444443333 4568999999999888777552      35566667766543      222334 478999877  9976


Q ss_pred             ee
Q 042938           75 VG   76 (106)
Q Consensus        75 iG   76 (106)
                      ++
T Consensus        84 ~~   85 (112)
T 2voc_A           84 VE   85 (112)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=98.51  E-value=4.7e-07  Score=53.10  Aligned_cols=59  Identities=17%  Similarity=0.206  Sum_probs=36.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|.+....|.+.    +-.+..+.++.+... +   ...+++ ..++|++++  +|+.+.
T Consensus        24 vv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~-~---~~~~~~-v~~~Pt~~~~~~G~~~~   88 (106)
T 1xwb_A           24 VLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECE-D---IAMEYN-ISSMPTFVFLKNGVKVE   88 (106)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCH-H---HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEECCcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchH-H---HHHHcC-CCcccEEEEEcCCcEEE
Confidence            5668999999999988877653    223333344433321 2   233334 478999866  887654

>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant, TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP: a.45.1.1 c.47.1.5

Probab=98.51  E-value=1.4e-06  Score=58.08  Aligned_cols=72  Identities=7%  Similarity=-0.022  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCC-CCccEEEECCeEeecchHHHhHH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQ-PTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~-~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ..++++|+.+.||+|.+++-+|...|++|+.+.++......+   + .+.+.. .++|++..||..+.+...+....
T Consensus         4 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~---~-~~~nP~~g~vP~L~~~g~~l~eS~aI~~yL   76 (230)
T 1gwc_A            4 GDDLKLLGAWPSPFVTRVKLALALKGLSYEDVEEDLYKKSEL---L-LKSNPVHKKIPVLIHNGAPVCESMIILQYI   76 (230)
T ss_dssp             CCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHH---H-HHHSTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHcCCCCeEEecccccCCHH---H-HhhCCCCCccCEEEECCEEeecHHHHHHHH
Confidence            467999999999999999999999999999998876433232   3 334543 68999999999888887776644

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=98.51  E-value=3.5e-07  Score=53.78  Aligned_cols=57  Identities=14%  Similarity=0.288  Sum_probs=38.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|.+....|.+.      ++.+..+|++.+++      ...+++ ..++|++++  +|+.++
T Consensus        24 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~-v~~~Pt~~~~~~G~~~~   88 (107)
T 2i4a_A           24 LVDFWAEWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPE------TPNAYQ-VRSIPTLMLVRDGKVID   88 (107)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCH------HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEECCCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHH------HHHhcC-CCccCEEEEEeCCEEEE
Confidence            5668999999999998887653      24455556655432      223334 488999877  998654

>2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1, NPPSFA, national project protein structural and functional analyses; HET: GSH; 1.40A {Mus musculus} PDB: 2cz3_A 1fw1_A*

Probab=98.49  E-value=1.1e-06  Score=58.57  Aligned_cols=76  Identities=16%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCc-hHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNG-PQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~-~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +.++++|+.+.||+|.+++-+|...|++|+.+.++..... ....+.+...+...+||++..||..+.....+....
T Consensus        10 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~e~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   86 (223)
T 2cz2_A           10 AGKPILYSYFRSSCSWRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLNPMKQVPALKIDGITIVQSLAIMEYL   86 (223)
T ss_dssp             -CCCEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSSGGGCGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             cCceEEEecCCCChHHHHHHHHHhcCCCCeEEEeecccCchhhcCHHHhccCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            4578999999999999999999999999999988864310 000123334466689999999999998887776644

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=98.49  E-value=3.3e-07  Score=54.73  Aligned_cols=65  Identities=12%  Similarity=0.133  Sum_probs=41.9

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc---------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF---------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--   70 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~---------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--   70 (106)
                      +.+++..++  ++.|+.+|||+|.+....+.+.         ++.+..+|++..++..      .+++ ..++|++++  
T Consensus        17 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~------~~~~-v~~~Pt~~~~~   89 (120)
T 1mek_A           17 FAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLA------QQYG-VRGYPTIKFFR   89 (120)
T ss_dssp             HHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSH------HHHT-CCSSSEEEEEE
T ss_pred             HHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHH------HHCC-CCcccEEEEEe
Confidence            445555554  5679999999999888777542         3455666666554322      2234 378999876  


Q ss_pred             CCeEe
Q 042938           71 GQRLV   75 (106)
Q Consensus        71 ~g~~i   75 (106)
                      +|+.+
T Consensus        90 ~g~~~   94 (120)
T 1mek_A           90 NGDTA   94 (120)
T ss_dssp             SSCSS
T ss_pred             CCCcC
Confidence            77643

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=98.49  E-value=2.6e-07  Score=56.70  Aligned_cols=57  Identities=16%  Similarity=0.277  Sum_probs=37.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|.+....|.+.     ++.+..+|+|..+   +   ...+++ ..++|++++  +|+.+.
T Consensus        42 vv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~---~---l~~~~~-v~~~Pt~~~~~~G~~~~  105 (124)
T 1xfl_A           42 VVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELK---S---VASDWA-IQAMPTFMFLKEGKILD  105 (124)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSH---H---HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCH---H---HHHHcC-CCccCEEEEEECCEEEE
Confidence            4669999999999998888664     3444445554322   2   333334 488999876  887653

>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A {Glycine max} PDB: 3fhs_A*

Probab=98.48  E-value=2.1e-06  Score=56.87  Aligned_cols=71  Identities=11%  Similarity=0.082  Sum_probs=56.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCC-CCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQ-PTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~-~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .++++|+.+.||+|.+++-+|...|++|+.+.++......+   + ...+.. .++|++..||..+.+...+....
T Consensus         3 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~---~-~~~nP~~g~vP~L~~~g~~l~eS~aI~~yL   74 (219)
T 2vo4_A            3 DEVVLLDFWPSPFGMRVRIALAEKGIKYEYKEEDLRNKSPL---L-LQMNPVHKKIPVLIHNGKPICESLIAVQYI   74 (219)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCTTSCCHH---H-HHHCTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CceEEEeccCCchHHHHHHHHHHcCCCceEEecCcccCCHH---H-HHhCCCCCcCCEEEECCEeeehHHHHHHHH
Confidence            37999999999999999999999999999998886433232   3 234553 68999999999998887776654

>1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI, protein structure initiative; 3.00A {Caenorhabditis elegans}

Probab=98.48  E-value=1.3e-06  Score=57.31  Aligned_cols=71  Identities=7%  Similarity=-0.100  Sum_probs=56.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .++++|+.+.||+|.+++-+|...|++|+.+.++......   ++ ...+...++|++..||..+.+...+....
T Consensus         2 ~~~~Ly~~~~s~~~~~vr~~L~~~gi~~e~~~v~~~~~~~---~~-~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   72 (208)
T 1yq1_A            2 PSYKLTYFFFRGLGEPIRLLFHLAGVQFEEVRMNPDQTWL---DI-KDSTPMKQLPVLNIDGFELPQSGAILRYL   72 (208)
T ss_dssp             CCEEEEEESSSTTTHHHHHHHHHHTCCCEEEEECTTTCCH---HH-HHTSTTSCSCEEEESSCEECCHHHHHHHH
T ss_pred             CceEEEEeCCCCchHHHHHHHHHcCCCeEEEEecccchhh---hh-hccCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            5689999999999999999999999999999888422222   23 34466679999999998888887766643

>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*

Probab=98.47  E-value=8e-07  Score=58.25  Aligned_cols=73  Identities=10%  Similarity=0.022  Sum_probs=57.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++++|+.+.||+|.+++-+|...|++|+.+.++...... ..+.+.+.+...++|++..||..+.+...+....
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~-~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   74 (209)
T 1axd_A            2 PMKLYGAVMSWNLTRCATALEEAGSDYEIVPINFATAEH-KSPEHLVRNPFGQVPALQDGDLYLFESRAICKYA   74 (209)
T ss_dssp             CEEEESCTTCTTHHHHHHHHHHHTCCEEEECCCTTTTGG-GSHHHHTTCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             ceEEEeCCCCchHHHHHHHHHhcCCCCEEEeccccccCc-CChHHHHhCcCCCCCeEEECCEEEecHHHHHHHH
Confidence            578999999999999999999999999999887643211 1123334566689999999999999888776643

>3lyp_A Stringent starvation protein A; structural genomics, GST-superfamily, SSPA, stringent starva protein A homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB: 3mdk_A

Probab=98.47  E-value=9.1e-07  Score=58.52  Aligned_cols=71  Identities=10%  Similarity=0.153  Sum_probs=54.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .++++|+.+.||+|.+++-+|...|++|+.+.++......    .+...+...++|++..||..+.+...+....
T Consensus         7 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~----~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   77 (215)
T 3lyp_A            7 NRLACYSDPADHYSHRVRIVLAEKGVSAEIISVEAGRQPP----KLIEVNPYGSLPTLVDRDLALWESTVVMEYL   77 (215)
T ss_dssp             -CCEEEECTTCHHHHHHHHHHHHHTCCCEEEECC---CCH----HHHHHCTTCCSSEEECC-CEEESHHHHHHHH
T ss_pred             CCeEEEeCCCCchHHHHHHHHHHCCCCcEEEecCcccccH----HHHHHCCCCCcCeEEECCEEeecHHHHHHHH
Confidence            3899999999999999999999999999999888653323    2334466689999999999888887776644

>4f03_A Glutathione transferase; GST fold; 1.80A {Phanerochaete chrysosporium} PDB: 4g19_A*

Probab=98.47  E-value=2.6e-07  Score=62.20  Aligned_cols=71  Identities=13%  Similarity=0.153  Sum_probs=51.9

Q ss_pred             CCEEEE---------EcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh-----------CCCCCccEEEE
Q 042938           11 KPVVIF---------SKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL-----------GCQPTVPAVFI   70 (106)
Q Consensus        11 ~~v~vf---------~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~-----------~~~~tvP~ifv   70 (106)
                      .+|++|         +.++||||.+++-+|..+|++|+.+.|+..+-.    ..+...           +...+||++..
T Consensus         3 ~pi~lYd~~~~~~~~~~~~SP~~~kvr~~L~~kgi~y~~~~v~~~~~~----~~~~~~g~~~~~~~~~~~P~~~VPvL~~   78 (253)
T 4f03_A            3 QPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEYPDIA----GVVQKLGGKPTEKTPDGRDHYTLPVIYD   78 (253)
T ss_dssp             CCEEEEECCCCGGGTTCCCCHHHHHHHHHHHHHTCCEEEEECCGGGHH----HHHHHHTCCCSEECTTCCEECCSCEEEE
T ss_pred             CCeEEeecCCCCCCCCCCcChhHHHHHHHHHHcCCCCEEEEEccccch----hhhhhcCCCCchhhHhhCCCCccCeEEe
Confidence            478998         467899999999999999999999988753321    122221           23358999987


Q ss_pred             --CCeEeecchHHHhHH
Q 042938           71 --GQRLVGGPNQVMSLH   85 (106)
Q Consensus        71 --~g~~iGg~~~~~~~~   85 (106)
                        ||..|.....+.+..
T Consensus        79 ~d~g~~l~ES~aI~~YL   95 (253)
T 4f03_A           79 PNTKKVVEDSAAIAKYL   95 (253)
T ss_dssp             TTTTEEEESHHHHHHHH
T ss_pred             CCCCEEEecHHHHHHHH
Confidence              568888777766643

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=98.47  E-value=7.9e-07  Score=53.85  Aligned_cols=56  Identities=18%  Similarity=0.222  Sum_probs=37.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      ++.|+.+|||+|.+....|.+.    +  +.+..+|++.++   +   ...+++ ..++|++++  +|+.+
T Consensus        35 lv~f~a~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~---~---l~~~~~-v~~~Pt~~~~~~G~~~   98 (119)
T 1w4v_A           35 VVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHT---D---LAIEYE-VSAVPTVLAMKNGDVV   98 (119)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTH---H---HHHHTT-CCSSSEEEEEETTEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCH---H---HHHHcC-CCcccEEEEEeCCcEE
Confidence            5779999999999998877553    2  344445554432   1   333334 488999877  89764

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=98.47  E-value=4.9e-07  Score=57.66  Aligned_cols=65  Identities=15%  Similarity=0.226  Sum_probs=42.3

Q ss_pred             HHhhhhCC-C-EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCe
Q 042938            4 VTRMVNEK-P-VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQR   73 (106)
Q Consensus         4 ~~~~~~~~-~-v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~   73 (106)
                      +.+.+... + ++.|+.+|||+|.+....|++.      ++.+-.+|++.+++      ...+++ ..++|++++  +|+
T Consensus        57 f~~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~------l~~~~~-i~~~Pt~~~~~~G~  129 (155)
T 2ppt_A           57 LARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPA------VAGRHR-IQGIPAFILFHKGR  129 (155)
T ss_dssp             HHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTH------HHHHTT-CCSSSEEEEEETTE
T ss_pred             HHHHHhCCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHH------HHHHcC-CCcCCEEEEEeCCe
Confidence            44454333 3 5779999999999998888653      35555666665432      223334 488999866  887


Q ss_pred             Ee
Q 042938           74 LV   75 (106)
Q Consensus        74 ~i   75 (106)
                      .+
T Consensus       130 ~~  131 (155)
T 2ppt_A          130 EL  131 (155)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=98.46  E-value=5.8e-07  Score=53.45  Aligned_cols=57  Identities=25%  Similarity=0.378  Sum_probs=38.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|.+....|.+.    +  +.+..+|++.++   +   ...+++ ..++|++++  +|+.++
T Consensus        29 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~---~---~~~~~~-v~~~Pt~~~~~~G~~~~   93 (115)
T 1thx_A           29 LVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNP---T---TVKKYK-VEGVPALRLVKGEQILD   93 (115)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCH---H---HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEECCCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCH---H---HHHHcC-CCceeEEEEEcCCEEEE
Confidence            5779999999999998877553    2  445555555432   2   333334 488999877  887654

>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5

Probab=98.45  E-value=1.4e-06  Score=57.41  Aligned_cols=71  Identities=15%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +++|+.+.||+|.+++-+|...|++|+.+.++.... ... +.+.+.+...++|++..||..+.+...+....
T Consensus         1 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~-~~~-~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   71 (210)
T 1v2a_A            1 MDYYYSLISPPCQSAILLAKKLGITLNLKKTNVHDP-VER-DALTKLNPQHTIPTLVDNGHVVWESYAIVLYL   71 (210)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCH-HHH-HHHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CeEEeCCCCccHHHHHHHHHHcCCCcEEEECCcccc-hhh-HHHHHhCCCCCcCeEEECCEEEEcHHHHHHHH
Confidence            478999999999999999999999999998876432 222 33445566689999999999998887776643

>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5

Probab=98.44  E-value=1.8e-06  Score=57.27  Aligned_cols=75  Identities=11%  Similarity=0.153  Sum_probs=56.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +.++++|+.+.||+|.+++-+|...|++|+.+.++.......- +.+...+...++|++..||..+.+...+....
T Consensus         6 ~~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~-~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   80 (221)
T 1e6b_A            6 EEKLKLYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFD-SDFKKINPMGTVPALVDGDVVINDSFAIIMYL   80 (221)
T ss_dssp             --CCEEEECTTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGC-HHHHHHCTTCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CCCeEEEecCCCCchHHHHHHHHHcCCCCEEEEecCCcccccC-HHHHhhCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            4568999999999999999999999999999988864321111 22334566689999999999998887776644

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.44  E-value=5.1e-07  Score=60.57  Aligned_cols=31  Identities=13%  Similarity=0.531  Sum_probs=24.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc---CCCceEEEc
Q 042938           13 VVIFSKSECCICFSIQTLICGF---GANPTVYEL   43 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~---~v~~~~v~v   43 (106)
                      |++|+.++||||++....|.++   ++++..+.+
T Consensus        90 vv~F~d~~Cp~C~~~~~~l~~l~~~~v~v~~~~~  123 (216)
T 1eej_A           90 ITVFTDITCGYCHKLHEQMADYNALGITVRYLAF  123 (216)
T ss_dssp             EEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence            7889999999999988777654   566655554

>4glt_A Glutathione S-transferase-like protein; structural genomics, function initiative, EFI; HET: GSH; 2.20A {Methylobacillus flagellatus}

Probab=98.43  E-value=4.3e-07  Score=60.87  Aligned_cols=70  Identities=1%  Similarity=-0.018  Sum_probs=55.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~   85 (106)
                      .+.+|+.+.||||.+++-+|.++|++|+.+.|+......+    +.+.+...+||++.. ||..|.....+.+..
T Consensus        22 ~MKLy~~~~SP~~~rVr~~L~e~gi~~e~~~v~~~~~~~~----~~~~nP~gkVPvL~~~dG~~l~ES~aI~~YL   92 (225)
T 4glt_A           22 SMKLLYSNTSPYARKVRVVAAEKRIDVDMVLVVLADPECP----VADHNPLGKIPVLILPDGESLYDSRVIVEYL   92 (225)
T ss_dssp             CCEEEECSSCHHHHHHHHHHHHHTCCCEEEECCTTCSSSC----GGGTCTTCCSCEEECTTSCEECSHHHHHHHH
T ss_pred             CceEecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCHH----HHHhCCCCCCCEEEeCCCCEEeehHHHHHHH
Confidence            3579999999999999999999999999999886543222    334466678999987 678888877776654

>4iel_A Glutathione S-transferase, N-terminal domain PROT; GST, glutathione S-transferase, enzyme function initiative, structural genomics; HET: GSH; 1.60A {Burkholderia ambifaria}

Probab=98.43  E-value=9.7e-07  Score=59.06  Aligned_cols=78  Identities=10%  Similarity=-0.035  Sum_probs=56.2

Q ss_pred             hhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938            7 MVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus         7 ~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++-+..+++|+.+.||+|.+++-+|...|++|+.+.++...... ..+.+...+...++|++..||..+.+...+....
T Consensus        18 ~~m~~m~~Ly~~~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~-~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   95 (229)
T 4iel_A           18 LYFQSMLHILGKIPSINVRKVLWLCTELNLPFEQEDWGAGFRTT-NDPAYLALNPNGLVPVIKDDGFVLWESNTIIRYL   95 (229)
T ss_dssp             ----CCEEEESCTTCHHHHHHHHHHHHHTCCEEEECCC--------CHHHHTTCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             ecccceEEEecCCCCcchHHHHHHHHHCCCCcEEEEecCCcCCc-CCHHHHhcCCCCCCCEEEECCEEEEeHHHHHHHH
Confidence            44455689999999999999999999999999999887532111 1123445566689999999999998888776643

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.43  E-value=3.2e-07  Score=54.55  Aligned_cols=57  Identities=19%  Similarity=0.354  Sum_probs=36.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|.+....|.+.     ++.+..+|++..+   +   ....++. ..+|++++  +|+.+.
T Consensus        30 vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~---~---~~~~~~v-~~~Pt~~~~~~G~~~~   93 (113)
T 1ti3_A           30 VVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELK---A---VAEEWNV-EAMPTFIFLKDGKLVD   93 (113)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCH---H---HHHHHHC-SSTTEEEEEETTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccH---H---HHHhCCC-CcccEEEEEeCCEEEE
Confidence            4568999999999998877654     3444455555432   2   2223343 78898866  887643

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=98.42  E-value=2.7e-06  Score=51.52  Aligned_cols=58  Identities=17%  Similarity=0.218  Sum_probs=38.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|++....|.+.     ++.+..+|++  ++..+   ...+++. .++|++++  +|+.++
T Consensus        41 vv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~--~~~~~---~~~~~~v-~~~Pt~~~~~~G~~~~  105 (124)
T 1faa_A           41 VLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCN--QENKT---LAKELGI-RVVPTFKILKENSVVG  105 (124)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECS--STTHH---HHHHHCC-SSSSEEEEEETTEEEE
T ss_pred             EEEEECCcCHhHHHHhHHHHHHHHHCCCCEEEEEecC--cchHH---HHHHcCC-CeeeEEEEEeCCcEEE
Confidence            5679999999999998888664     3444444544  22233   3333454 88999766  887653

>1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP: a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A* 2aaw_A* 3fr6_A 3fr3_A*

Probab=98.42  E-value=2.6e-06  Score=56.11  Aligned_cols=74  Identities=11%  Similarity=0.052  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHH----hCCCCCccEEEECCeEeecchHHHhHH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQ----LGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~----~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +.++++|+.+.||+|.+++-+|...|++|+.+.++...+  ...+++..    .+...++|++..||..+.....+....
T Consensus         2 m~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~--~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   79 (211)
T 1okt_A            2 GDNIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGVNGD--AFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIVRYL   79 (211)
T ss_dssp             CCCEEEEEESSSTTTHHHHHHHHHHTCCCEEEEETSSSC--HHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CCccEEEEECCCchhHHHHHHHHHcCCCceeeeccCCHH--HHHHHhhccccccCCCCCCCEEEECCEEeehHHHHHHHH
Confidence            356899999999999999999999999999998864222  22233331    566689999999999888887776643

>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans}

Probab=98.42  E-value=3.1e-06  Score=55.55  Aligned_cols=71  Identities=7%  Similarity=-0.063  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh--CCCCCccEEEECCeEeecchHHHhHH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL--GCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~--~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +.++++|+.+.||+|.+++-+|...|++|+.+.++.. . .   ..+...  +...++|++..||..+.+...+....
T Consensus         1 M~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~-~---~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   73 (207)
T 1zl9_A            1 MVSYKLTYFNGRGAGEVSRQIFAYAGQQYEDNRVTQE-Q-W---PALKETCAAPFGQLPFLEVDGKKLAQSHAIARFL   73 (207)
T ss_dssp             CCCEEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTT-T-H---HHHHHTTCSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CCceEEEEcCCCchHHHHHHHHHHcCCCceEEEecHH-H-H---HHHhhccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            3568999999999999999999999999999998852 2 1   233445  55679999999999998887776644

>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A*

Probab=98.42  E-value=8.5e-07  Score=58.20  Aligned_cols=73  Identities=7%  Similarity=0.005  Sum_probs=55.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++++|+.+.||+|.+++-+|...|++|+.+.++....... .+.+.+.+...++|++..||..+.+...+....
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~-~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   74 (211)
T 1gnw_A            2 GIKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEHK-KEPFLSRNPFGQVPAFEDGDLKLFESRAITQYI   74 (211)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGG-STTGGGTCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             eeEEEeCCCCcchHHHHHHHHhcCCCcEEEEecccccccc-CHHHHHhCCCCCCCEEEECCEEEeCHHHHHHHH
Confidence            5899999999999999999999999999988875321100 012223455679999999999998887776643

>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles gambiae} PDB: 2il3_A* 2imk_A*

Probab=98.42  E-value=1.2e-06  Score=58.13  Aligned_cols=74  Identities=11%  Similarity=0.174  Sum_probs=57.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .++++|+.+.||+|.+++-+|...|++|+.+.++....... .+.+.+.+...++|++..||..+.+...+....
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~-~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   75 (221)
T 2imi_A            2 SNLVLYTLHLSPPCRAVELTAKALGLELEQKTINLLTGDHL-KPEFVKLNPQHTIPVLDDNGTIITESHAIMIYL   75 (221)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHHTCCEEEEECCGGGTGGG-SHHHHTTCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CceEEeeCCCCccHHHHHHHHHHcCCCceEEEccccccccC-CHHHHhhCcCCCCCEEEECCEEEeeHHHHHHHH
Confidence            46899999999999999999999999999998875422111 123334566689999999999998888776643

>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea mays} SCOP: a.45.1.1 c.47.1.5

Probab=98.42  E-value=7.7e-07  Score=58.68  Aligned_cols=71  Identities=11%  Similarity=0.130  Sum_probs=55.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC--chHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN--GPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~--~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++++|+.+.||+|.+++-+|...|++|+.+.++....  ...  ++ .+.+...++|++..||..+.+...+....
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~--~~-~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   74 (216)
T 1aw9_A            2 PLKLYGMPLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQP--DF-LALNPFGQIPALVDGDEVLFESRAINRYI   74 (216)
T ss_dssp             CEEEESCTTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCC--SG-GGTCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             ceEEEecCCCccHHHHHHHHHHcCCccEEEecCccccccCCH--HH-HHhCCCCCcCEEEECCEEeeCHHHHHHHH
Confidence            5889999999999999999999999999988875321  111  12 23455679999999999999888776644

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=98.41  E-value=2.9e-07  Score=55.91  Aligned_cols=51  Identities=20%  Similarity=0.367  Sum_probs=34.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++.|+.+|||+|.+....|.+.     ++.+..+|++..+   +   ...+++ ..++|++++
T Consensus        27 lv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~---~---~~~~~~-i~~~Pt~~~   82 (118)
T 2f51_A           27 LVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNG---N---AADAYG-VSSIPALFF   82 (118)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCH---H---HHHHTT-CCSSSEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCH---H---HHHhcC-CCCCCEEEE
Confidence            5679999999999998888663     4556666666542   1   233334 478999754

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=98.41  E-value=2.6e-07  Score=56.73  Aligned_cols=57  Identities=14%  Similarity=0.261  Sum_probs=38.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|++....|.+.      ++.+..+|++..+      +...+++ ..++|++++  +|+.+.
T Consensus        46 lv~F~a~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~------~l~~~~~-v~~~Pt~~~~~~G~~~~  110 (128)
T 3ul3_B           46 VLYFFAKWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNE------SLARKFS-VKSLPTIILLKNKTMLA  110 (128)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCH------HHHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCH------HHHHHcC-CCCcCEEEEEECCEEEE
Confidence            4569999999999998888654      2344455655443      2333344 488999866  887665

>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus}

Probab=98.41  E-value=1.9e-06  Score=56.38  Aligned_cols=71  Identities=6%  Similarity=-0.098  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +.++++|+.+.||+|.+++-+|...|++|+.+.++.. ...    .+...+...++|++..||..+.+...+....
T Consensus         1 m~~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~-~~~----~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   71 (206)
T 2on5_A            1 MVHYKLTYFAGRGLAEPIRQIFALAGQKYEDVRYTFQ-EWP----KHKDEMPFGQIPVLEEDGKQLAQSFAIARYL   71 (206)
T ss_dssp             CCCEEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTT-TGG----GGGGGSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCceEEEecCCCcchHHHHHHHHHcCCCceEEEecHH-HHH----HhccCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            3578999999999999999999999999999988853 222    2234466679999999999998887776643

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.41  E-value=1.4e-06  Score=55.99  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=22.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C-CCceEEEc
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G-ANPTVYEL   43 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~-v~~~~v~v   43 (106)
                      |++|+.++||+|.+....|.++    + +.+..+.+
T Consensus        26 i~~f~d~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~   61 (175)
T 3gyk_A           26 VVEFFDYNCPYCRRAMAEVQGLVDADPNVRLVYREW   61 (175)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            6779999999999887766543    3 35555554

>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori}

Probab=98.41  E-value=1.6e-06  Score=57.30  Aligned_cols=74  Identities=8%  Similarity=0.041  Sum_probs=56.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .++++|+.+.||+|.+++-+|...|++|+.+.++..... ...+.+...+...++|++..||..+.+...+....
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   75 (216)
T 3ay8_A            2 SSLKLYHFPVSGPSRGALLAARAIGIPIQIEIVNLFKKE-QLQESFLKLNPQHCVPTLDDNNFVLWESRAIACYL   75 (216)
T ss_dssp             CCCEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCGG-GCCHHHHHHSSSCCSSEEEETTEEEECHHHHHHHH
T ss_pred             CceEEecCCCCccHHHHHHHHHHcCCCceEEEecccccc-ccCHHHHhhCCCCCCCeEEECCEEEEcHHHHHHHH
Confidence            468999999999999999999999999999988854311 00012334466679999999999998887776643

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.40  E-value=5e-07  Score=55.03  Aligned_cols=64  Identities=13%  Similarity=0.224  Sum_probs=42.7

Q ss_pred             HHhhhhCCCEEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeE
Q 042938            4 VTRMVNEKPVVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRL   74 (106)
Q Consensus         4 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~   74 (106)
                      +.++++..-++.|+.+|||+|++....|.+.       ++.+..+|++.++   +   ...+++ ...+|++++  +|+.
T Consensus        17 f~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~---~---~~~~~~-v~~~Pt~~~~~~G~~   89 (126)
T 1x5e_A           17 WRELLEGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQP---G---LSGRFI-INALPTIYHCKDGEF   89 (126)
T ss_dssp             HHHHTSSEEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCH---H---HHHHTT-CCSSSEEEEEETTEE
T ss_pred             HHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCH---H---HHHHcC-CcccCEEEEEeCCeE
Confidence            4555655556789999999999998887653       4555566665432   1   233334 478999865  8873

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=98.40  E-value=9e-07  Score=55.17  Aligned_cols=57  Identities=21%  Similarity=0.332  Sum_probs=38.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|.++...|.+.    +  +.+..+|++..+   +   ...+++. .++|++++  +|+.+.
T Consensus        28 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~---l~~~~~v-~~~Pt~~~~~~G~~~~   92 (140)
T 3hz4_A           28 VVMFYSPACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNP---W---TAEKYGV-QGTPTFKFFCHGRPVW   92 (140)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCH---H---HHHHHTC-CEESEEEEEETTEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCH---h---HHHHCCC-CcCCEEEEEeCCcEEE
Confidence            5679999999999998888654    2  444555555432   2   3333454 88999876  887654

>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}

Probab=98.40  E-value=2.4e-06  Score=59.78  Aligned_cols=72  Identities=11%  Similarity=0.084  Sum_probs=57.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ..+++|+.+.||+|.+++-+|..+|++|+.+.++......+   ++...+...++|.+..||..+.....+....
T Consensus         2 ~~~~Ly~~~~sp~~~kvr~~L~~~gi~ye~~~v~~~~~~~~---~~~~n~P~g~vPvL~~~g~~l~eS~aI~~yL   73 (310)
T 3ic8_A            2 SELILHHYPTSLFAEKARLMLGFKGVNWRSVTIPSIMPKPD---LTALTGGYRKTPVLQIGADIYCDTALMARRL   73 (310)
T ss_dssp             CCEEEEECTTCGGGHHHHHHHHHHTCEEEEEECCSSSCCHH---HHHHHSSCCCSCEEEETTEEECSHHHHHHHH
T ss_pred             CeEEEEecCCCcHHHHHHHHHHhcCCCcEEEEcCCCCCcHH---HHHhcCCCCceeEEEECCEEEcCHHHHHHHH
Confidence            46899999999999999999999999999999887433333   3332226789999999999888887766543

>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid, bacterial, biodegradation, fumaryl pyruvate; HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A*

Probab=98.39  E-value=2e-06  Score=56.62  Aligned_cols=73  Identities=11%  Similarity=0.080  Sum_probs=56.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++++|+.+.||+|.+++-+|...|++|+.+.++....... .+.+...+...++|++..||..+.+...+....
T Consensus         2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~-~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   74 (214)
T 2v6k_A            2 KMKLYNFWRSGTSHRLRIALNLKGVPYEYLAVHLGKEEHL-KDAFKALNPQQLVPALDTGAQVLIQSPAIIEWL   74 (214)
T ss_dssp             CCEEEECSSCHHHHHHHHHHHHHTCCCEEEECCTTTTGGG-SHHHHHHCTTCCSCEEECSSCEEECHHHHHHHH
T ss_pred             eeEEEecCCCCcHHHHHHHHHHCCCCceEEecCCCccccc-CHHHHhcCCCCcCCEEEECCEEEecHHHHHHHH
Confidence            5789999999999999999999999999998886432111 123334466689999988888888887776643

>3bby_A Uncharacterized GST-like protein YFCF; NP_416804.1, glutathione S-transferase, N-terminal domain, S genomics; 1.85A {Escherichia coli}

Probab=98.39  E-value=1.7e-06  Score=57.13  Aligned_cols=75  Identities=12%  Similarity=0.118  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC--CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           10 EKPVVIFSKS--ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        10 ~~~v~vf~~~--~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +.++++|+.+  .||+|.+++-+|...|++|+.+.++...... ..+.+...+...++|++..||..+.....+....
T Consensus         4 ~~~~~Ly~~~~~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   80 (215)
T 3bby_A            4 KPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGEH-LQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYL   80 (215)
T ss_dssp             CCCEEEEEETTSCCHHHHHHHHHHHHHTCCCEEEEEC-------------------CCCEEEETTEEEESHHHHHHHH
T ss_pred             CCCEEEEecCCCCCcHHHHHHHHHHHcCCCCEEEEecCccccc-cCHHHHhhCCCCCCCEEEeCCeEeecHHHHHHHH
Confidence            4578999987  8999999999999999999998887542111 1112233455578999999999898887776643

>4dej_A Glutathione S-transferase related protein; transferase-like protein, transcription regulation; 2.90A {Idiomarina loihiensis}

Probab=98.39  E-value=2.8e-06  Score=57.19  Aligned_cols=71  Identities=10%  Similarity=0.122  Sum_probs=58.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCC-CCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQ-PTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~-~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ..+++|+.+.||+|.+++-+|...|++|+.+.++......+    +...+.. .++|++..||..+.....+....
T Consensus        11 ~~~~Ly~~~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~----~~~~nP~~g~vPvL~~~g~~l~eS~aI~~YL   82 (231)
T 4dej_A           11 SVMTLYSGKDDLKSHQVRLVLAEKGVGVEITYVTDESTPED----LLQLNPYPEAKPTLVDRELVLYNAQIIMEYL   82 (231)
T ss_dssp             SSCEEEECSSCHHHHHHHHHHHHHTCBCEEEECCSSCCCHH----HHHHCCSSSCCSEEEETTEEEESHHHHHHHH
T ss_pred             ceEEEEcCCCChHHHHHHHHHHHcCCCcEEEEcCcccCCHH----HHHhCCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            34899999999999999999999999999999987643333    3345666 78999999999998887776644

>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus}

Probab=98.39  E-value=2.5e-06  Score=55.80  Aligned_cols=70  Identities=7%  Similarity=-0.061  Sum_probs=56.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .++++|+.+.||+|.+++-+|...|++|+.+.++.. ...    .+...+...++|++..||..+.+...+....
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~----~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   71 (204)
T 2ws2_A            2 VHYKLTYFNGRGAAEIIRQVFVLAGQDYEDVRLTHE-EWP----KHKASMPFGQLPVLEVDGKQLPQSVAIVRYL   71 (204)
T ss_dssp             CCEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECTT-TGG----GTGGGSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CccEEEEeCCCchHHHHHHHHHHcCCCceEEEecHh-hHH----HhhhcCCCCCCCEEEECCEEeecHHHHHHHH
Confidence            568999999999999999999999999999988853 222    2234466679999999999998888776643

>3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A*

Probab=98.38  E-value=3.2e-06  Score=56.29  Aligned_cols=69  Identities=6%  Similarity=0.013  Sum_probs=55.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .+++|+.+.||+|.+++-+|...|++|+.+.++..  ...   .+...+...++|++..+|..+.+...+....
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~---~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL   70 (229)
T 3lxz_A            2 SLKLYGFSVSNYYNMVKLALLEKGLTFEEVTFYGG--QAP---QALEVSPRGKVPVLETEHGFLSETSVILDYI   70 (229)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCCC--SCH---HHHTTSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             eEEEEeCCCCchHHHHHHHHHHcCCCCEEEecCCC--CCH---HHHhhCCCCCcCeEEeCCceeecHHHHHHHH
Confidence            37899999999999999999999999999999542  222   3344566689999999998888887776644

>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus}

Probab=98.38  E-value=3.1e-06  Score=55.36  Aligned_cols=70  Identities=7%  Similarity=-0.104  Sum_probs=56.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .++++|+.+.||+|.+++-+|...|++|+.+.++..    .. ..+...+...++|++..||..+.+...+....
T Consensus         2 ~~~~Ly~~~~s~~~~~vr~~L~~~gi~~e~~~v~~~----~~-~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   71 (206)
T 2on7_A            2 VHYKLTYFAIRGAGECARQIFALADQEFEDVRLDKE----QF-AKVKPDLPFGQVPVLEVDGKQLAQSLAICRYL   71 (206)
T ss_dssp             CCEEEEEESSSTTTHHHHHHHHHHTCCCEEEEECHH----HH-HHHGGGSSSSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CceEEEEcCCCcchHHHHHHHHHcCCCeeEEEecHH----HH-HHhCcCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            468999999999999999999999999999988841    11 23344566689999999999998887776643

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=98.38  E-value=1.1e-06  Score=52.78  Aligned_cols=57  Identities=14%  Similarity=0.299  Sum_probs=38.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|.+....|.+.      ++.+..+|++.++   +   ...+++ ..++|++++  +|+.+.
T Consensus        34 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~---~~~~~~-i~~~Pt~~~~~~g~~~~   98 (121)
T 2i1u_A           34 LVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNP---E---TARNFQ-VVSIPTLILFKDGQPVK   98 (121)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---H---HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCH---H---HHHhcC-CCcCCEEEEEECCEEEE
Confidence            6779999999999998887653      2444555555432   2   333334 478999876  887643

>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori}

Probab=98.38  E-value=2.9e-06  Score=57.42  Aligned_cols=72  Identities=8%  Similarity=0.059  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCe---EeecchHHHhHH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQR---LVGGPNQVMSLH   85 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~---~iGg~~~~~~~~   85 (106)
                      ...+++|+.+.||+|.+++-+|...|++|+.+.++.....++    +...+...++|++.. ||.   .+.....+....
T Consensus        24 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~----~~~~nP~g~vP~L~~~~g~~~~~l~eS~aI~~yL   99 (246)
T 3rbt_A           24 TDKLRLYHVDMNPYGHRVLLVLEAKRIKYEVYRLDPLRLPEW----FRAKNPRLKIPVLEIPTDQGDRFLFESVVICDYL   99 (246)
T ss_dssp             CSSEEEEECTTCHHHHHHHHHHHHTTBCEEEEECCSSSCCHH----HHHHCTTCBSCEEEECCTTSCEEECCHHHHHHHH
T ss_pred             CCceEEEecCCCccHHHHHHHHHHcCCCceEEEeCcccCCHH----HHHhCCCCCCCEEEecCCCCceeeeCHHHHHHHH
Confidence            356899999999999999999999999999999887653332    334466689999999 888   888877766543

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.37  E-value=4.4e-07  Score=60.78  Aligned_cols=32  Identities=16%  Similarity=0.425  Sum_probs=24.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc---CCCceEEEcc
Q 042938           13 VVIFSKSECCICFSIQTLICGF---GANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~---~v~~~~v~vd   44 (106)
                      |++|+.++||||++....|.++   ++++.++.+.
T Consensus        90 vv~F~d~~Cp~C~~~~~~l~~~~~~~v~v~~~~~p  124 (211)
T 1t3b_A           90 VTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFP  124 (211)
T ss_dssp             EEEEECTTCHHHHHHHTTHHHHHHTTEEEEEEECC
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHhCCcEEEEEECC
Confidence            7789999999999988777654   5666555443

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.37  E-value=4.8e-07  Score=55.92  Aligned_cols=65  Identities=14%  Similarity=0.195  Sum_probs=40.2

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CC
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQ   72 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g   72 (106)
                      +.+++..++  ++.|+.+|||+|++....|.+.       +..+..+.||.+.. .+   ...+++ ...+|++++  +|
T Consensus        27 ~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~~---~~~~~~-v~~~Pt~~~~~~G  101 (140)
T 2dj1_A           27 FDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA-SM---LASKFD-VSGYPTIKILKKG  101 (140)
T ss_dssp             HHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTC-HH---HHHHTT-CCSSSEEEEEETT
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCccc-HH---HHHHCC-CCccCeEEEEECC
Confidence            455555554  5668999999999887777542       22244444444333 12   333344 478999876  88


Q ss_pred             e
Q 042938           73 R   73 (106)
Q Consensus        73 ~   73 (106)
                      +
T Consensus       102 ~  102 (140)
T 2dj1_A          102 Q  102 (140)
T ss_dssp             E
T ss_pred             c
Confidence            7

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=98.36  E-value=2.8e-06  Score=50.44  Aligned_cols=57  Identities=14%  Similarity=0.117  Sum_probs=37.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      ++.|+.+|||+|++....|.+.     ++.+..+|++  +...+   ...+++. .++|++++  +|+.+
T Consensus        28 lv~f~a~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~--~~~~~---~~~~~~v-~~~Pt~~~~~~G~~~   91 (111)
T 2pu9_C           28 VLDMFTQWCGPSKAMAPKYEKLAEEYLDVIFLKLDCN--QENKT---LAKELGI-RVVPTFKILKENSVV   91 (111)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECS--STTHH---HHHHHCC-SBSSEEEEESSSSEE
T ss_pred             EEEEECCcCHhHHHHCHHHHHHHHHCCCeEEEEEecC--cchHH---HHHHcCC-CeeeEEEEEeCCcEE
Confidence            5669999999999998888664     3444455554  22223   3333454 88999766  77654

>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens}

Probab=98.36  E-value=4.3e-06  Score=54.90  Aligned_cols=76  Identities=11%  Similarity=0.181  Sum_probs=57.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHHHh
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLHVQ   87 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~~~   87 (106)
                      ..+++|+.+.||+|.+++-+|...|++|+.+.++.......- +.+...+...++|++.+ ||..+.+...+.....+
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~-~~~~~~~P~g~vP~L~~d~g~~l~eS~aI~~yL~~   78 (210)
T 3m3m_A            2 SLYKVYGDYRSGNCYKIKLMLNLLGLPYEWQAVDILGGDTQT-EAFLAKNPNGKIPVLELEDGTCLWESNAILNFLAD   78 (210)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCCEEEEECCTTTTTTSS-HHHHTTCTTCCSCEEEETTSCEEECHHHHHHHHHT
T ss_pred             CeEEEeCCCCCCcHHHHHHHHHHcCCCCEEEEecCCCccccC-HHHHhhCCCCCCCEEEecCCEEEecHHHHHHHHhc
Confidence            458999999999999999999999999999988763211111 23344566689999995 88888888777665443

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=98.36  E-value=2.4e-06  Score=51.96  Aligned_cols=58  Identities=16%  Similarity=0.238  Sum_probs=37.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE---CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI---GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv---~g~~i   75 (106)
                      ++.|+.+|||+|.+....|.+.      ++.+..+|++.+.+    .+....++ ...+|++++   +|+.+
T Consensus        30 lv~f~a~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~----~~~~~~~~-v~~~Pt~~~~~~~G~~~   96 (126)
T 2l57_A           30 IIMFKTDTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKN----IDLAYKYD-ANIVPTTVFLDKEGNKF   96 (126)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHH----HHHHHHTT-CCSSSEEEEECTTCCEE
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCch----HHHHHHcC-CcceeEEEEECCCCCEE
Confidence            5668999999999988877553      34444555222211    12333344 488999877   78754

>3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A {Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A*

Probab=98.36  E-value=2.2e-06  Score=56.63  Aligned_cols=72  Identities=8%  Similarity=0.104  Sum_probs=55.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~   85 (106)
                      +++|+.+.||+|.+++-+|...|++|+.+.++....... .+.+...+...++|++.. ||..+.....+....
T Consensus         1 m~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~-~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL   73 (219)
T 3f6d_A            1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHM-KPEFLKLNPQHCIPTLVDEDGFVLWESRAIQIYL   73 (219)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGG-SHHHHHHCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             CEEEeCCCCCchHHHHHHHHHcCCCceEEEccCcccccC-CHHHHhhCCCCccCeEEeCCCCEEEcHHHHHHHH
Confidence            478999999999999999999999999998876432111 123344566689999999 898888887776543

>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase, dehydroascorbate reductase, reductase; 1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A*

Probab=98.36  E-value=1.6e-06  Score=58.26  Aligned_cols=72  Identities=10%  Similarity=0.016  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLH   85 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~   85 (106)
                      ...+++|+.+.||+|.+++-+|...|++|+.+.++......+    +...+...++|++.. ||..+.....+....
T Consensus        21 ~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~----~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   93 (239)
T 3q18_A           21 EGLIRIYSMRFCPYSHRTRLVLKAKDIRHEVVNINLRNKPEW----YYTKHPFGHIPVLETSQSQLIYESVIACEYL   93 (239)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHHHTTCCEEEEEBCSSSCCGG----GGGTSTTCCSCEEECTTCCEECSHHHHHHHH
T ss_pred             CCeEEEEeCCCChHHHHHHHHHHHcCCCcEEEecCcccCCHH----HHhcCCCCCCCEEEeCCCceeecHHHHHHHH
Confidence            446999999999999999999999999999999886543332    233466689999999 888888877776643

>1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP: a.45.1.1 c.47.1.5

Probab=98.36  E-value=2.7e-06  Score=55.96  Aligned_cols=72  Identities=10%  Similarity=0.115  Sum_probs=54.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +++|+.+.||+|.+++-+|...|++|+.+.++...... ..+.+.+.+...++|++..||..+.+...+....
T Consensus         1 ~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~-~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   72 (209)
T 1pn9_A            1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTDLMKGEH-MKPEFLKLNPQHCIPTLVDNGFALWESRAIQIYL   72 (209)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGG-GSHHHHHHCTTCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CeEEeCCCCccHHHHHHHHHHcCCCcEEEEecccCCCc-CCHHHHhhCCCCCCCEEEECCEEEEeHHHHHHHH
Confidence            47899999999999999999999999998887532111 1022334466679999999999998887776643

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=98.35  E-value=4.7e-07  Score=56.08  Aligned_cols=57  Identities=16%  Similarity=0.178  Sum_probs=38.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|++....|.+.     ++.+..+|+|..+      +....++ ...+|++++  +|+.+.
T Consensus        50 vv~f~a~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~------~~~~~~~-v~~~Pt~~~~~~G~~~~  113 (139)
T 3d22_A           50 LANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELS------DFSASWE-IKATPTFFFLRDGQQVD  113 (139)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSH------HHHHHTT-CCEESEEEEEETTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccH------HHHHHcC-CCcccEEEEEcCCeEEE
Confidence            5668999999999998888664     3555566665432      2333344 488998654  786543

>2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*

Probab=98.35  E-value=5.1e-06  Score=54.14  Aligned_cols=70  Identities=4%  Similarity=-0.114  Sum_probs=56.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHV   86 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~   86 (106)
                      ++++|+.+.||+|.+++-+|...|++|+.+.++.. . .   ..+...+...++|++..||..+.+...+.....
T Consensus         2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~-~---~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   71 (198)
T 2cvd_A            2 NYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQA-D-W---PEIKSTLPFGKIPILEVDGLTLHQSLAIARYLT   71 (198)
T ss_dssp             CEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGG-G-H---HHHHTTSTTSCSCEEEETTEEEECHHHHHHHHH
T ss_pred             CcEEEEcCCCchHHHHHHHHHHcCCCceEEEeCHH-H-H---HHhccCCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            57899999999999999999999999999988752 1 1   233445666799999999999988887766543

>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated protein, indomethacin, isomerase; HET: IMN; 2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pbj_A*

Probab=98.35  E-value=1.9e-06  Score=59.80  Aligned_cols=72  Identities=10%  Similarity=0.260  Sum_probs=54.7

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC--C--eEeecchHHHhH
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG--Q--RLVGGPNQVMSL   84 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~--g--~~iGg~~~~~~~   84 (106)
                      .+..+++|+.+.||+|.+++.+|..+|++|+.++|+.... .+    + +.++..+||++.++  |  ..+.....+...
T Consensus        11 ~~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~-~~----~-~~~p~~~vP~l~~~~~g~~~~l~eS~aI~~y   84 (290)
T 1z9h_A           11 SRLQLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLR-AE----I-KFSSYRKVPILVAQEGESSQQLNDSSVIISA   84 (290)
T ss_dssp             --CEEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTC-GG----G-TTCSCCSSCEEEEEETTEEEEECSHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCCeEEEECChhhH-HH----H-HHcCCCCCCEEEECCCCCeEEecCHHHHHHH
Confidence            3456899999999999999999999999999999974322 12    2 24667899999884  3  578887777664


Q ss_pred             HH
Q 042938           85 HV   86 (106)
Q Consensus        85 ~~   86 (106)
                      ..
T Consensus        85 L~   86 (290)
T 1z9h_A           85 LK   86 (290)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC, chloride channel, ION transport, ionic channel, nucleus, transport, gated channel; 1.95A {Homo sapiens} PDB: 3kjy_A

Probab=98.35  E-value=1.9e-06  Score=58.64  Aligned_cols=72  Identities=15%  Similarity=0.220  Sum_probs=49.5

Q ss_pred             CCCEEEEEc--------CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHH
Q 042938           10 EKPVVIFSK--------SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus        10 ~~~v~vf~~--------~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~   81 (106)
                      ...|.+|.+        +.||+|.+++-+|...|++|+.+.|+.....+    .+...+...+||++..||..+.....+
T Consensus        23 ~~~i~l~~ka~~~~~s~~~sP~~~rv~~~L~~~gi~ye~~~v~~~~~~~----~~~~~nP~g~VPvL~~dg~~l~ES~aI   98 (250)
T 3fy7_A           23 ETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTRRSPD----VLKDFAPGSQLPILLYDSDAKTDTLQI   98 (250)
T ss_dssp             --CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEEC------------------CCSCEEEETTEEECCHHHH
T ss_pred             CCCceEEEEeCCCCCCCCCChHHHHHHHHHHHcCCccEEEECCCccChH----HHHhhCCCCCCCEEEECCEEecCHHHH
Confidence            457999987        56999999999999999999999888653222    223345567999999999998888777


Q ss_pred             HhHH
Q 042938           82 MSLH   85 (106)
Q Consensus        82 ~~~~   85 (106)
                      ....
T Consensus        99 ~~YL  102 (250)
T 3fy7_A           99 EDFL  102 (250)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6644

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=98.34  E-value=6.8e-07  Score=55.11  Aligned_cols=56  Identities=16%  Similarity=0.265  Sum_probs=38.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      ++.|+.+|||+|.+....|.+.      ++.+..+|++.+++..      .+++ ...+|++++  +|+.+
T Consensus        44 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~------~~~~-v~~~Pt~~~~~~G~~~  107 (128)
T 2o8v_B           44 LVDFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA------PKYG-IRGIPTLLLFKNGEVA  107 (128)
T ss_dssp             EEEEECSSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTTS------GGGT-CCSSSEEEEEETTEEE
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHHH------HHcC-CCccCEEEEEeCCEEE
Confidence            5679999999999988777553      2445566666655422      2234 478999877  89764

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.34  E-value=5e-07  Score=60.42  Aligned_cols=53  Identities=19%  Similarity=0.336  Sum_probs=38.2

Q ss_pred             EEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCe
Q 042938           14 VIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQR   73 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~   73 (106)
                      +.|+.+|||+|.++...+.+.     ++.+..+|++.+++      ...+++ ..++|+++++|+
T Consensus       141 v~F~a~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~------l~~~~~-v~~~Pt~~~~G~  198 (229)
T 2ywm_A          141 WVFVTTSCGYCPSAAVMAWDFALANDYITSKVIDASENQD------LAEQFQ-VVGVPKIVINKG  198 (229)
T ss_dssp             EEEECTTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHH------HHHHTT-CCSSSEEEEGGG
T ss_pred             EEEECCCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHH------HHHHcC-CcccCEEEECCE
Confidence            459999999999999888664     45556667665432      223334 488999999886

>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} SCOP: a.45.1.1 c.47.1.5

Probab=98.34  E-value=3.3e-06  Score=55.20  Aligned_cols=70  Identities=7%  Similarity=-0.100  Sum_probs=56.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .++++|+.+.||+|.+++-+|...|++|+.+.++..    .. ..+.+.+...++|++..||..+.+...+....
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~----~~-~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   71 (206)
T 1tw9_A            2 VHYKLTYFNGRGAGECARQVFALADQKYEDVRLTQE----TF-VPLKATFPFGQVPVLEVDGQQLAQSQAICRYL   71 (206)
T ss_dssp             CCEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECHH----HH-GGGGGGSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CceEEEEcCCCccHHHHHHHHHHcCCCceEEEeCHH----HH-HHHcccCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            468999999999999999999999999999988742    11 12334466679999999999998888776643

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=98.34  E-value=5.1e-06  Score=48.78  Aligned_cols=58  Identities=16%  Similarity=0.297  Sum_probs=36.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      ++.|+.+|||+|.+....|.+.    +-.+..+.+|.+.+. +   ...+++. .++|++++  +|+.+
T Consensus        23 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~-~---~~~~~~v-~~~Pt~~~~~~G~~~   86 (107)
T 1dby_A           23 LVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP-N---VASEYGI-RSIPTIMVFKGGKKC   86 (107)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-H---HHHHHTC-CSSCEEEEESSSSEE
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCH-H---HHHHCCC-CcCCEEEEEeCCEEE
Confidence            5678999999999998887653    323444444433332 2   2333454 78999877  77653

>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris}

Probab=98.34  E-value=4.1e-06  Score=55.75  Aligned_cols=74  Identities=11%  Similarity=0.105  Sum_probs=57.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC--CchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHHHh
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIP--NGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLHVQ   87 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~--~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~~~   87 (106)
                      ..+++|+.+.||+|.+++-+|...|++|+.+.++...  ....   .+...+...++|++.+ ||..+.....+.....+
T Consensus         2 ~~~~Ly~~~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~---~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~~   78 (225)
T 3m8n_A            2 SLYKLYSMQRSGNSYKVRLALALLDAPYRAVEVDILRGESRTP---DFLAKNPSGQVPLLETAPGRYLAESNAILWYLAV   78 (225)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCGGGTTTSSH---HHHTTCTTCCSSEEECSTTCEEECHHHHHHHHHT
T ss_pred             CceEEecCCCCCCHHHHHHHHHHcCCCeEEEEeCCCCCccCCH---HHHHhCCCCCCCEEEeCCCCEEEcHHHHHHHHHc
Confidence            4589999999999999999999999999999887532  2122   3344566689999996 77888888777665543

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.34  E-value=3.1e-07  Score=57.21  Aligned_cols=79  Identities=15%  Similarity=0.142  Sum_probs=46.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE--ECCeEe---ecchHHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF--IGQRLV---GGPNQVM   82 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if--v~g~~i---Gg~~~~~   82 (106)
                      ++.|+.+||++|+.+...|.++.     +.+-.+|++..+  .       + .+..++|+++  .+|+.+   -|+.++-
T Consensus        34 vv~f~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~--~-------~-~~i~~~Pt~~~~~~G~~v~~~~G~~~~~  103 (135)
T 2dbc_A           34 VIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI--E-------H-YHDNCLPTIFVYKNGQIEGKFIGIIECG  103 (135)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC--S-------S-CCSSCCSEEEEESSSSCSEEEESTTTTT
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc--c-------c-CCCCCCCEEEEEECCEEEEEEEeEEeeC
Confidence            56699999999999998886642     333444554432  1       2 2347889864  477543   3333211


Q ss_pred             h-HHHhCCchHHHHhcCcee
Q 042938           83 S-LHVQNELGPLLVRAGAIW  101 (106)
Q Consensus        83 ~-~~~~g~L~~~L~~~g~~~  101 (106)
                      . -....+|..+|++.|++.
T Consensus       104 ~~~~~~~~l~~~l~~~~~i~  123 (135)
T 2dbc_A          104 GINLKLEELEWKLSEVGAIQ  123 (135)
T ss_dssp             CTTCCHHHHHHHHHHHTSSC
T ss_pred             CCcCCHHHHHHHHHHcCCcc
Confidence            0 001235778888888753

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.33  E-value=2.9e-06  Score=51.99  Aligned_cols=74  Identities=16%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             hHHHhhhhC-CCE-EEEEcCCCchHHHHHHHHhhc----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938            2 DMVTRMVNE-KPV-VIFSKSECCICFSIQTLICGF----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR   73 (106)
Q Consensus         2 ~~~~~~~~~-~~v-~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~   73 (106)
                      +.+.++++. .++ +.|.++|||.|+.+...|++.    ++++-.+|||...+...  +....++.....|++  |-||+
T Consensus        15 e~f~~ii~~~~~vvi~khatwCgpc~~~~~~~e~~~~~~~v~~~~vdVde~r~~Sn--~IA~~~~V~h~sPq~il~k~G~   92 (112)
T 3iv4_A           15 DQFEQVIEENKYVFVLKHSETCPISANAYDQFNKFLYERDMDGYYLIVQQERDLSD--YIAKKTNVKHESPQAFYFVNGE   92 (112)
T ss_dssp             HHHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHHHHH--HHHHHHTCCCCSSEEEEEETTE
T ss_pred             HHHHHHHhcCCCEEEEEECCcCHhHHHHHHHHHHHhccCCceEEEEEeecCchhhH--HHHHHhCCccCCCeEEEEECCE
Confidence            345666654 344 556789999999998888665    68888999987543211  122233542258886  57998


Q ss_pred             Eeec
Q 042938           74 LVGG   77 (106)
Q Consensus        74 ~iGg   77 (106)
                      .+..
T Consensus        93 ~v~~   96 (112)
T 3iv4_A           93 MVWN   96 (112)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=98.33  E-value=3.4e-06  Score=61.90  Aligned_cols=77  Identities=13%  Similarity=0.219  Sum_probs=58.1

Q ss_pred             hhhCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC---eEeecchHHHh
Q 042938            7 MVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ---RLVGGPNQVMS   83 (106)
Q Consensus         7 ~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g---~~iGg~~~~~~   83 (106)
                      -..+.++++|+.+.||+|.+++-+|...|++|+.+.++..+...+   .+.+.+...+||++..+|   ..+.....+..
T Consensus        21 ~m~~~~~~Ly~~~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~---~~~~~nP~g~vP~L~~~~~~g~~l~eS~aI~~   97 (471)
T 4ags_A           21 HMAARALKLYVSATCPFCHRVEIVAREKQVSYDRVAVGLREEMPQ---WYKQINPRETVPTLEVGNADKRFMFESMLIAQ   97 (471)
T ss_dssp             ----CCEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCCGGGCCH---HHHHHCTTCCSCEEEECSSSCEEEESHHHHHH
T ss_pred             ccCCCceEEECCCCCchHHHHHHHHHHcCCCCEEEEeCCCCCccH---HHHhhCCCCccCeEEECCcCeEEEecHHHHHH
Confidence            344568999999999999999999999999999999886432222   233446668999999987   88888877766


Q ss_pred             HHH
Q 042938           84 LHV   86 (106)
Q Consensus        84 ~~~   86 (106)
                      ...
T Consensus        98 yL~  100 (471)
T 4ags_A           98 YLD  100 (471)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.33  E-value=7.2e-06  Score=50.75  Aligned_cols=72  Identities=8%  Similarity=0.190  Sum_probs=44.8

Q ss_pred             HHhhhhCCCEEEEEcCCCchHHHHHHHHhhc----CCCceEEEcccCCCc---hHHHHHHHHhCCCCCccEEE--ECCeE
Q 042938            4 VTRMVNEKPVVIFSKSECCICFSIQTLICGF----GANPTVYELDQIPNG---PQIERALQQLGCQPTVPAVF--IGQRL   74 (106)
Q Consensus         4 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~~~---~~~~~~l~~~~~~~tvP~if--v~g~~   74 (106)
                      +.+.+...-++.|+.+|||+|++....|.+.    ++.+..+|++...+.   .+..+...+++. .++|+++  -+|+.
T Consensus        26 ~~~~~~~~vlv~F~a~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v-~~~Pt~~~~~~G~~  104 (135)
T 3emx_A           26 FRQLLQGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGV-EGTPTLVFYKEGRI  104 (135)
T ss_dssp             HHHHHTSSEEEEEEETTCHHHHHHHHHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTC-CSSSEEEEEETTEE
T ss_pred             HHHHhCCcEEEEEECCcCHhhhHhChhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCC-ceeCeEEEEcCCEE
Confidence            4455555235668999999999998888654    455666777544321   122334444454 7899864  47765


Q ss_pred             ee
Q 042938           75 VG   76 (106)
Q Consensus        75 iG   76 (106)
                      +.
T Consensus       105 v~  106 (135)
T 3emx_A          105 VD  106 (135)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.33  E-value=1.4e-06  Score=54.06  Aligned_cols=56  Identities=18%  Similarity=0.299  Sum_probs=37.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      ++.|+.+|||+|......|.+.    +  +.+-.+|++.++   +   ....++ ..++|++++  +|+.+
T Consensus        54 vv~f~~~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~---l~~~~~-v~~~Pt~~~~~~G~~~  117 (140)
T 1v98_A           54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHP---G---LAARYG-VRSVPTLVLFRRGAPV  117 (140)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCH---H---HHHHTT-CCSSSEEEEEETTEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCH---H---HHHHCC-CCccCEEEEEeCCcEE
Confidence            6779999999999998888653    2  334445554332   2   233334 488999876  88764

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=98.33  E-value=1.5e-06  Score=55.11  Aligned_cols=66  Identities=18%  Similarity=0.345  Sum_probs=37.2

Q ss_pred             CCCE-EEEE-cCCCchHHHHHHHH---hh----cCCCceEEEcccCCCc-------hHHHHHHHHhCCCCCccEEEE---
Q 042938           10 EKPV-VIFS-KSECCICFSIQTLI---CG----FGANPTVYELDQIPNG-------PQIERALQQLGCQPTVPAVFI---   70 (106)
Q Consensus        10 ~~~v-~vf~-~~~Cp~C~~~~~~L---~~----~~v~~~~v~vd~~~~~-------~~~~~~l~~~~~~~tvP~ifv---   70 (106)
                      ..++ +.|+ .+|||+|++....|   .+    .+..+..+.+|.+...       ....+....++ ...+|++++   
T Consensus        47 gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~-v~~~Pt~~~~d~  125 (154)
T 2ju5_A           47 HKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYK-VTGFPELVFIDA  125 (154)
T ss_dssp             CCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTT-CCSSSEEEEECT
T ss_pred             CCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcC-CCCCCEEEEEcC
Confidence            3444 4477 89999999988766   22    2233444444433321       11223334444 478999764   


Q ss_pred             CCeEee
Q 042938           71 GQRLVG   76 (106)
Q Consensus        71 ~g~~iG   76 (106)
                      +|+.+.
T Consensus       126 ~G~~~~  131 (154)
T 2ju5_A          126 EGKQLA  131 (154)
T ss_dssp             TCCEEE
T ss_pred             CCCEEE
Confidence            676655

>3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori}

Probab=98.33  E-value=2.9e-06  Score=56.30  Aligned_cols=72  Identities=11%  Similarity=0.084  Sum_probs=55.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +.+|+.+.||+|.+++-+|..+|++|+.+.||.......- +.+.+.+...+||++..||..+.....+....
T Consensus         3 mkLY~~~~S~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~-~~~~~~nP~g~vP~L~d~g~~l~eS~aI~~YL   74 (216)
T 3vk9_A            3 IDLYYVPGSAPCRAVLLTAKALNLNLNLKLVDLHHGEQLK-PEYLKLNPQHTVPTLVDDGLSIWESRAIITYL   74 (216)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGS-HHHHHHCTTCCSCEEEETTEEECCHHHHHHHH
T ss_pred             EEEEeCCCChhHHHHHHHHHHcCCCCEEEEeCCCCCccCC-HHHHHhCCCCccceEecCCceeechHHHHHHH
Confidence            6899999999999999999999999999888754321111 23344566679999999999988887776643

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=98.33  E-value=3.6e-06  Score=51.61  Aligned_cols=59  Identities=12%  Similarity=0.213  Sum_probs=38.0

Q ss_pred             EEEEEcCCCchHHHHHHHHh--hc------CCCceEEEcccCCCchHHHHHHHHhCCC---CCccEEEE---CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLIC--GF------GANPTVYELDQIPNGPQIERALQQLGCQ---PTVPAVFI---GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~--~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~---~tvP~ifv---~g~~i   75 (106)
                      ++.|+.+|||+|++....|.  +.      ++.+..+|++..+...+   .... .+.   .++|++++   +|+.+
T Consensus        33 lv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~---l~~~-~~v~~~~~~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           33 LLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLE---LSQA-YGDPIQDGIPAVVVVNSDGKVR  105 (133)
T ss_dssp             EEEEECTTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHH---HHHH-TTCGGGGCSSEEEEECTTSCEE
T ss_pred             EEEEcCCCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHH---HHHH-hCCccCCccceEEEECCCCCEE
Confidence            56699999999999998887  32      34555566643233333   2233 345   78998754   67765

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=98.33  E-value=6.1e-06  Score=48.11  Aligned_cols=58  Identities=21%  Similarity=0.265  Sum_probs=36.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      ++.|+.+|||+|......|.+.    +-.+..+.++.+... +   ...+++ ..++|++++  +|+.+
T Consensus        22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---~~~~~~-v~~~Pt~~~~~~g~~~   85 (105)
T 1fb6_A           22 MVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP-G---IATQYN-IRSIPTVLFFKNGERK   85 (105)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-H---HHHHTT-CCSSSEEEEEETTEEE
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchH-H---HHHhCC-CCcccEEEEEeCCeEE
Confidence            5779999999999998887553    323444444443331 2   233334 478999876  88754

>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans serovar lai} PDB: 3ubl_A*

Probab=98.32  E-value=3.4e-06  Score=56.88  Aligned_cols=70  Identities=6%  Similarity=0.049  Sum_probs=55.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ..+++|+.+.||+|.+++-+|...|++|+.+.++... ..    .+...+...++|++..+|..+.....+....
T Consensus         2 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~----~~~~~nP~g~vPvL~~~~~~l~eS~aI~~YL   71 (242)
T 3ubk_A            2 VMIKLHGASISNYVNKVKLGILEKGLEYEQIRIAPSQ-EE----DFLKISPMGKIPVLEMDGKFIFESGAILEFL   71 (242)
T ss_dssp             CCEEEESCTTCHHHHHHHHHHHHHTCCEEEECCCCCC-CH----HHHTTSTTCCSCEEEETTEEECCHHHHHHHH
T ss_pred             CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEecCCcc-CH----HHHhcCCCCCcCeEEECCceEecHHHHHHHH
Confidence            4589999999999999999999999999999985432 22    3344566679999999998887777666543

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=98.32  E-value=1.8e-06  Score=50.97  Aligned_cols=68  Identities=13%  Similarity=0.228  Sum_probs=41.5

Q ss_pred             HHhhhhCCC-EEEEEcCCCchHHHHHHHHhhcCC-------CceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCe
Q 042938            4 VTRMVNEKP-VVIFSKSECCICFSIQTLICGFGA-------NPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQR   73 (106)
Q Consensus         4 ~~~~~~~~~-v~vf~~~~Cp~C~~~~~~L~~~~v-------~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~   73 (106)
                      +.+.+...+ ++.|+.+|||+|++....+.+..-       .+..+.+|.+... +   ...+++ ..++|++++  +|+
T Consensus        15 ~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-~---l~~~~~-v~~~Pt~~~~~~g~   89 (111)
T 3uvt_A           15 FDDTIAEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER-N---ICSKYS-VRGYPTLLLFRGGK   89 (111)
T ss_dssp             HHHHHHSSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCH-H---HHHHTT-CCSSSEEEEEETTE
T ss_pred             HHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccH-h---HHHhcC-CCcccEEEEEeCCc
Confidence            445554444 566999999999999988866532       2334444443331 2   333344 478998765  886


Q ss_pred             Eee
Q 042938           74 LVG   76 (106)
Q Consensus        74 ~iG   76 (106)
                      .+.
T Consensus        90 ~~~   92 (111)
T 3uvt_A           90 KVS   92 (111)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=98.30  E-value=2.5e-06  Score=53.36  Aligned_cols=68  Identities=9%  Similarity=0.285  Sum_probs=41.0

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      +.+++...+  ++.|+.+||++|++....|.+.    +-.+..+.||.+... +   ....++ ..++|++++  +|+.+
T Consensus        48 ~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~-~---l~~~~~-v~~~Pt~~~~~~G~~~  122 (148)
T 3p2a_A           48 LDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEP-A---LSTRFR-IRSIPTIMLYRNGKMI  122 (148)
T ss_dssp             HHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-H---HHHHTT-CCSSSEEEEEETTEEE
T ss_pred             HHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCH-H---HHHHCC-CCccCEEEEEECCeEE
Confidence            444444443  5669999999999998887653    223444444443332 2   333344 488998754  88765


Q ss_pred             e
Q 042938           76 G   76 (106)
Q Consensus        76 G   76 (106)
                      .
T Consensus       123 ~  123 (148)
T 3p2a_A          123 D  123 (148)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*

Probab=98.30  E-value=5.3e-06  Score=56.00  Aligned_cols=73  Identities=8%  Similarity=0.084  Sum_probs=56.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .+++|+.+.||+|.+++-+|...|++|+.+.++...... ..+.+.+.+...++|++..||..+.+...+....
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~-~~~~~~~~nP~g~vP~L~d~g~~l~eS~aI~~YL   74 (244)
T 1ljr_A            2 GLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQH-KSKEFLQINSLGKLPTLKDGDFILTESSAILIYL   74 (244)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTTCCCEEEECCTTTTGG-GSHHHHTTCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             eEEEEecCCCcchHHHHHHHHHcCCCCeEEEeccccccc-CCHHHHHhCCCCcCcEEEECCEEEEchHHHHHHH
Confidence            368999999999999999999999999999888643211 1123344566679999999999998887776643

>2c3n_A Glutathione S-transferase theta 1; glutathione transferase, polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A

Probab=98.29  E-value=5.5e-06  Score=56.15  Aligned_cols=74  Identities=12%  Similarity=0.035  Sum_probs=56.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ..+++|+.+.||+|.+++-+|...|++|+.+.++.......- +.+...+...+||++..||..+.....+....
T Consensus         8 ~~~~ly~~~~sp~~rkv~~~L~e~gi~ye~~~v~~~~~~~~~-~~~~~~nP~gkVPvL~d~g~~l~ES~aI~~YL   81 (247)
T 2c3n_A            8 MGLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLS-DAFAQVNPLKKVPALKDGDFTLTESVAILLYL   81 (247)
T ss_dssp             -CEEEEECTTSHHHHHHHHHHHHTTCCCEEEECCGGGTGGGS-HHHHHHCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             cceEEeecCCChhHHHHHHHHHHcCCCceEEEeccccCCcCC-HHHHhhCCCCcCcEEEECCEEEEcHHHHHHHH
Confidence            469999999999999999999999999999988754321111 12334466689999999999888887766543

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=98.28  E-value=2.2e-06  Score=52.27  Aligned_cols=60  Identities=13%  Similarity=0.204  Sum_probs=37.0

Q ss_pred             EEEEEcCCCchHHHHHHHH---hh----cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE---CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLI---CG----FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI---GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L---~~----~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv---~g~~i   75 (106)
                      ++.|+.+|||+|.+....+   ..    .+..+..+.||.+.+...  +....++ ...+|++++   +|+.+
T Consensus        31 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~--~~~~~~~-v~~~Pt~~~~d~~G~~~  100 (130)
T 2kuc_A           31 FVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGV--ELRKKYG-VHAYPTLLFINSSGEVV  100 (130)
T ss_dssp             EEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHH--HHHHHTT-CCSSCEEEEECTTSCEE
T ss_pred             EEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchH--HHHHHcC-CCCCCEEEEECCCCcEE
Confidence            5668999999999988776   22    223355555655432221  2333444 488999865   67654

>2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier, S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A* 14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A* 3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A* 17gs_A* 3gus_A* 10gs_A* 1aqv_A* ...

Probab=98.28  E-value=2.8e-06  Score=55.92  Aligned_cols=72  Identities=13%  Similarity=0.068  Sum_probs=55.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .++++|+.+.||+|.+++-+|...|++|+.+.++..+. .  .+.+...+...++|++..||..+.....+....
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~-~--~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   73 (210)
T 2a2r_A            2 PPYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETW-Q--EGSLKASCLYGQLPKFQDGDLTLYQSNTILRHL   73 (210)
T ss_dssp             CSEEEEECSSSGGGHHHHHHHHHTTCCEEEEECCHHHH-H--HSHHHHHSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CceEEEEeCCcchHHHHHHHHHHcCCCceEEEecHHhh-c--hhhccCCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            46899999999999999999999999999998875311 0  112333455678999999999888887766643

>1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene regulation; HET: GSH; 2.20A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A* 1k0a_A* 1g6w_A 1g6y_A 1hqo_A

Probab=98.28  E-value=5.7e-06  Score=56.39  Aligned_cols=74  Identities=12%  Similarity=0.111  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE---CCeEeecchHHHhH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI---GQRLVGGPNQVMSL   84 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv---~g~~iGg~~~~~~~   84 (106)
                      +..+++|+.+.||+|.+++-+|...|++|+.+.++.......- +.+.+.+...+||++..   ||..+.....+...
T Consensus        17 m~~~~Ly~~~~~p~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~-~~~~~~nP~g~vP~L~~~~~~g~~l~ES~aI~~Y   93 (260)
T 1k0d_A           17 LEGYTLFSHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRA-PEFVSVNPNARVPALIDHGMDNLSIWESGAILLH   93 (260)
T ss_dssp             SSSEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGS-HHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHH
T ss_pred             CCcEEEEcCCCCccHHHHHHHHHHCCCCceEEEecCccccccC-HHHHhhCCCCCcCEEEecCCCCeEEECHHHHHHH
Confidence            4569999999999999999999999999999888764321111 23344566679999998   78888887776654

>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A*

Probab=98.28  E-value=3.1e-06  Score=55.51  Aligned_cols=72  Identities=11%  Similarity=0.084  Sum_probs=56.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +++|+.+.||+|.+++-+|...|++|+.+.++...... ..+.+...+...++|++..||..+.....+....
T Consensus         2 ~~Ly~~~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~-~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   73 (209)
T 3ein_A            2 VDFYYLPGSSPCRSVIMTAKAVGVELNKKLLNLQAGEH-LKPEFLKINPQHTIPTLVDNGFALWESRAIQVYL   73 (209)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCGGGTGG-GSHHHHTTCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             eEEecCCCCccHHHHHHHHHHcCCCcEEEEcccccCCc-CCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            57899999999999999999999999998887643211 1123445566679999999999998887776543

>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5

Probab=98.28  E-value=6e-06  Score=54.61  Aligned_cols=73  Identities=14%  Similarity=0.144  Sum_probs=56.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .+++|+.+.||+|.+++-+|...|++|+.+.++...... ..+.+...+...++|++..||..+.....+....
T Consensus         2 ~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~-~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   74 (218)
T 1r5a_A            2 TTVLYYLPASPPCRSVLLLAKMIGVELDLKVLNIMEGEQ-LKPDFVELNPQHCIPTMDDHGLVLWESRVILSYL   74 (218)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGG-GSHHHHTTCTTCCSSEEEETTEEEECHHHHHHHH
T ss_pred             eEEEEeCCCChhHHHHHHHHHHcCCCCeEEecCcccccc-cCHHHHhhCCCCCcCEEEECCEEEEcHHHHHHHH
Confidence            478999999999999999999999999999888643211 1123344566679999999999888887766643

>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.30A {Legionella pneumophila subsp}

Probab=98.26  E-value=3.2e-06  Score=56.03  Aligned_cols=73  Identities=14%  Similarity=0.240  Sum_probs=48.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC-chHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN-GPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~-~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +++|+.+.||+|.+++-+|...|++|+.+.++.... .....+.+...+...++|++..||..+.....+....
T Consensus         3 ~~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   76 (222)
T 3niv_A            3 LILYDYFRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLDINGQILSQSMAIIDYL   76 (222)
T ss_dssp             -CEEECTTCHHHHHHHHHHHHTTCCCCEEECCC-------------------CCSEEEETTEEEECHHHHHHHH
T ss_pred             EEEEcCCCCcHHHHHHHHHHHcCCCcEEEEeccccccccccCHHHHhcCCCCCcCEEEECCEEeecHHHHHHHH
Confidence            679999999999999999999999999998886441 1111122334455579999999999998887776644

>3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione, structural genomics, protein structure initiative; HET: GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A*

Probab=98.25  E-value=3.6e-06  Score=55.40  Aligned_cols=69  Identities=6%  Similarity=0.062  Sum_probs=55.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-ECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~~~~~~~~   85 (106)
                      +.+|+.+.||+|.+++-+|...|++|+.+.++.....+    .+...+...++|++. .||..+.....+....
T Consensus         3 ~~Ly~~~~sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~----~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   72 (213)
T 3m0f_A            3 LKLIGMLDSPYVRRVAISLKSLGLPFEHHSLSVFSTFE----QFKAINPVVKAPTLVCEGGEVLMDSSLIIDYL   72 (213)
T ss_dssp             CEEESCTTSHHHHHHHHHHHHHTCCCEEECCCTTTTHH----HHHHHCTTCCSSEEECTTCCEEESHHHHHHHH
T ss_pred             EEEecCCCCCcHHHHHHHHHHCCCCcEEEEecCCCCcH----HHHhcCCCCCcCeEEeCCCcEEEcHHHHHHHH
Confidence            68999999999999999999999999999888654322    334456667999998 6888888877766543

>2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A*

Probab=98.25  E-value=7.5e-06  Score=53.48  Aligned_cols=69  Identities=7%  Similarity=-0.055  Sum_probs=55.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++++|+.+.||+|.+++-+|...|++|+.+.++.. ..    ..+...+...++|++..||..+.+...+....
T Consensus         2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~----~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   70 (202)
T 2gsq_A            2 KYTLHYFPLMGRAELCRFVLAAHGEEFTDRVVEMA-DW----PNLKATMYSNAMPVLDIDGTKMSQSMCIARHL   70 (202)
T ss_dssp             CEEEEECSSSGGGHHHHHHHHHTTCCCEEEECCTT-TH----HHHGGGSGGGSSCEEEETTEEECCHHHHHHHH
T ss_pred             CcEEEEcCCCchhHHHHHHHHHcCCCeeEEEeCHH-HH----HhhcccCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            57899999999999999999999999999998852 21    12334555579999999999888887776644

>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus}

Probab=98.25  E-value=1e-05  Score=54.02  Aligned_cols=71  Identities=10%  Similarity=-0.005  Sum_probs=56.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +.++++|+.+.||+|.+++-+|...|++|+.+.++..    .. +.+...+...++|++..||..+.+...+....
T Consensus        25 m~~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~----~~-~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~YL   95 (225)
T 2hnl_A           25 MEKYTLTYFNGRGRAEVIRLLFALANVSYEDNRITRD----EW-KYLKPRTPFGHVPMLNVSGNVLGESHAIELLL   95 (225)
T ss_dssp             CCCEEEEEESSSGGGHHHHHHHHHHTCCCEEEEECHH----HH-HHHGGGSSSSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHCCCCeeEEEeChh----hh-HHhccCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            3468999999999999999999999999999988741    11 23344566679999999999888887776644

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=97.56  E-value=1.3e-07  Score=55.32  Aligned_cols=57  Identities=23%  Similarity=0.406  Sum_probs=37.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           13 VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      ++.|+.+|||+|.+....+.+..      +.+..+|++.+++      ....++ ...+|++++  +|+.+.
T Consensus        23 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~-v~~~Pt~~~~~~g~~~~   87 (106)
T 2yj7_A           23 LVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPN------TAAQYG-IRSIPTLLLFKNGQVVD   87 (106)
Confidence            67789999999999988886643      3334455554332      222223 377899876  787553

>4hz2_A Glutathione S-transferase domain; glutathione,enzyme function initiative; HET: GSH; 1.50A {Xanthobacter autotrophicus}

Probab=98.24  E-value=5.3e-06  Score=55.54  Aligned_cols=75  Identities=13%  Similarity=0.174  Sum_probs=57.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-ECCeEeecchHHHhHHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IGQRLVGGPNQVMSLHV   86 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~~~~~~~~~   86 (106)
                      ..+++|+.+.||+|.+++-+|...|++|+.+.++.......- +.+...+...+||++. .||..+.....+.....
T Consensus        21 ~m~~Ly~~~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~-~~~~~~~P~g~vPvL~~~~g~~l~eS~aI~~yL~   96 (230)
T 4hz2_A           21 QSMRIYGMNGSGNCWKAAQILSLTGHDFEWVETSSGAAGTRS-ADFLALNAIGKVPVVVLDDGTALRESNAILLHFA   96 (230)
T ss_dssp             -CCEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSSTTTTTS-HHHHHHCTTCCSCEEECTTSCEEECHHHHHHHHH
T ss_pred             hhheeeCCCCCccHHHHHHHHHHcCCCceEEEecCCCCccCC-HHHHhhCCCCCCCEEEecCCEEeeCHHHHHHHHh
Confidence            347899999999999999999999999999988764221111 2333446668999999 88888888877766544

>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A*

Probab=98.24  E-value=3.7e-06  Score=55.88  Aligned_cols=74  Identities=7%  Similarity=0.048  Sum_probs=55.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCC--CceEEEcccCCCchHHHHHHHHhCCCCCccEEE-ECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGA--NPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v--~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~~~~~~~~   85 (106)
                      .++++|+.+.||+|.+++-+|...|+  +|+.+.++.......- +.+...+...++|++. .||..+.....+....
T Consensus        17 ~~~~Ly~~~~sp~~~~v~~~L~~~gi~~~~~~~~v~~~~~~~~~-~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   93 (233)
T 3ibh_A           17 QKMIIYDTPAGPYPARVRIALAEKNMLSSVQFVRINLWKGEHKK-PEFLAKNYSGTVPVLELDDGTLIAECTAITEYI   93 (233)
T ss_dssp             --CEEEECTTCHHHHHHHHHHHHTTCGGGCEEEECCGGGTGGGS-HHHHHHCTTCCSCEEECTTCCEEESHHHHHHHH
T ss_pred             cceEEecCCCCCccHHHHHHHHhcCCCCCceEEEeccccccccC-hHHhccCCCCccceEEecCCeEEecHHHHHHHH
Confidence            46899999999999999999999999  9999988754321111 2333456668999999 6888888877766543

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.23  E-value=1.2e-06  Score=60.40  Aligned_cols=80  Identities=13%  Similarity=0.172  Sum_probs=49.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecchHHHhH-
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGPNQVMSL-   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~~~~~~~-   84 (106)
                      |+.|+.+|||+|..+...|.++     ++.|-.+|++. +.      ....++ ...+|++  |.+|+.++.+...... 
T Consensus       137 vV~Fya~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-~~------l~~~~~-I~~~PTll~~~~G~~v~~~vG~~~~~  208 (245)
T 1a0r_P          137 VVHIYEDGIKGCDALNSSLICLAAEYPMVKFCKIKASN-TG------AGDRFS-SDVLPTLLVYKGGELLSNFISVTEQL  208 (245)
T ss_dssp             EEEEECTTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-HC------CTTSSC-TTTCSEEEEEETTEEEEEETTGGGGS
T ss_pred             EEEEECCCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-HH------HHHHCC-CCCCCEEEEEECCEEEEEEeCCcccc
Confidence            5669999999999999888664     34555666654 11      111223 4778886  4588766433222211 


Q ss_pred             ---HHhCCchHHHHhcCce
Q 042938           85 ---HVQNELGPLLVRAGAI  100 (106)
Q Consensus        85 ---~~~g~L~~~L~~~g~~  100 (106)
                         .....|..+|.+.|++
T Consensus       209 g~~~~~e~Le~~L~~~g~l  227 (245)
T 1a0r_P          209 AEEFFTGDVESFLNEYGLL  227 (245)
T ss_dssp             CTTCCHHHHHHHHHTTTCS
T ss_pred             cccccHHHHHHHHHHcCCC
Confidence               0112488889988886

>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione; HET: GSH; 1.05A {Escherichia coli}

Probab=98.23  E-value=1.8e-06  Score=56.22  Aligned_cols=70  Identities=7%  Similarity=-0.062  Sum_probs=54.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-ECCeEeecchHHHhHHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IGQRLVGGPNQVMSLHV   86 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~~~~~~~~~   86 (106)
                      +++|+.+.||+|.+++-+|...|++|+.+.++......+   + ...+...++|++. .||..+.....+.....
T Consensus         1 m~Ly~~~~sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~---~-~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~   71 (202)
T 3r2q_A            1 MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNG---V-AQFNPLGKVPVLVTEEGECWFDSPIIAEYIE   71 (202)
T ss_dssp             CEEEECSSCHHHHHHHHHHHHTTCCCEEEECCTTSSSCS---C-TTTCTTCCSCEEECTTSCEECSHHHHHHHHH
T ss_pred             CEEEeCCCCcHHHHHHHHHHHcCCCCeEEEecCCCCcHH---H-HHhCCCCCcCeEEecCCcEEecHHHHHHHHH
Confidence            478999999999999999999999999998876422222   2 2335567999999 68888888877766543

>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*

Probab=98.23  E-value=2.6e-06  Score=56.88  Aligned_cols=70  Identities=7%  Similarity=0.033  Sum_probs=55.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLHV   86 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~~   86 (106)
                      +++|+.+.||+|.+++-+|...|++|+.+.++......+    +...+...++|++.+ ||..+.+...+.....
T Consensus         3 ~~Ly~~~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~----~~~~nP~g~vPvL~~~~g~~l~eS~aI~~yL~   73 (226)
T 3tou_A            3 MKLIGSHASPYTRKVRVVLAEKKIDYQFVLEDVWNADTQ----IHQFNPLGKVPCLVMDDGGALFDSRVIAEYAD   73 (226)
T ss_dssp             CEEEECSSCHHHHHHHHHHHHTTCCCEEEECCTTSTTCC----GGGTCTTCCSCEEECTTSCEECSHHHHHHHHH
T ss_pred             EEEecCCCCchHHHHHHHHHHcCCCcEEEecCccCCcHH----HHHhCCCCCCCEEEeCCCCEeccHHHHHHHHH
Confidence            689999999999999999999999999998876443222    223466689999996 7888888777766543

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.22  E-value=1.2e-07  Score=57.85  Aligned_cols=58  Identities=16%  Similarity=0.316  Sum_probs=38.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938           12 PVVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      -++.|+.+|||+|.+....|.+.     ++.+..+|++..++      ...+++. .++|++++  +|+.+.
T Consensus        39 ~vv~f~~~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~------~~~~~~v-~~~Pt~~~~~~g~~~~  103 (130)
T 1wmj_A           39 VIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKE------VAEKYNV-EAMPTFLFIKDGAEAD  103 (130)
T ss_dssp             CBEECCSSSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGG------GHHHHTC-CSSCCCCBCTTTTCCB
T ss_pred             EEEEEECCCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHH------HHHHcCC-CccceEEEEeCCeEEE
Confidence            36778999999999887777553     46666666665432      2223353 78998876  776543

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.22  E-value=3.4e-06  Score=51.42  Aligned_cols=56  Identities=13%  Similarity=0.118  Sum_probs=35.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF----------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      ++.|+.+|||+|++....|.+.          ++.+..+|++.+++      ...+++. ..+|++++  +|+.+
T Consensus        29 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~------l~~~~~v-~~~Pt~~~~~~g~~~   96 (133)
T 1x5d_A           29 MVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQV------LASRYGI-RGFPTIKIFQKGESP   96 (133)
T ss_dssp             EEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCH------HHHHHTC-CSSSEEEEEETTEEE
T ss_pred             EEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHH------HHHhCCC-CeeCeEEEEeCCCce
Confidence            5679999999999887766442          24444555554332      2233354 78999855  77644

>3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A*

Probab=98.21  E-value=6.8e-06  Score=54.89  Aligned_cols=74  Identities=8%  Similarity=0.033  Sum_probs=56.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC-----------eEeecch
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ-----------RLVGGPN   79 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g-----------~~iGg~~   79 (106)
                      .++++|+.+.||+|.+++-+|...|++|+.+.++...... ..+.+...+...+||++..+|           ..+....
T Consensus         8 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~-~~~~~~~~nP~g~vP~L~~~~g~~~~~~~~~~~~l~eS~   86 (235)
T 3n5o_A            8 PNFELYGYFRSSCSGRLRIAFHLKSIPYTRHPVNLLKGEQ-HSDTYKSLNPTNTVPLLVVSNINNTVSPSSASFSIGQSL   86 (235)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGG-GSHHHHHHCTTCCSCEEEEESSCCSSSTTCSEEEECSHH
T ss_pred             CCeEEEecCCCcHHHHHHHHHHHcCCccEEEecccccccc-cCHHHHhcCCCCCCCEEEeCCCccccccccCceeehhHH
Confidence            4699999999999999999999999999999887532211 112334456668999999988           8888777


Q ss_pred             HHHhHH
Q 042938           80 QVMSLH   85 (106)
Q Consensus        80 ~~~~~~   85 (106)
                      .+....
T Consensus        87 aI~~yL   92 (235)
T 3n5o_A           87 AALEYL   92 (235)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.21  E-value=2.5e-06  Score=51.99  Aligned_cols=51  Identities=18%  Similarity=0.162  Sum_probs=33.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++.|+.+|||+|++....|.+.    +  +.+..+|++..+   +   ...+++. ..+|++++
T Consensus        39 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~---l~~~~~v-~~~Pt~~~   95 (130)
T 2dml_A           39 LVEFYAPWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQ---S---LGGQYGV-QGFPTIKI   95 (130)
T ss_dssp             EEEEECTTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCH---H---HHHHHTC-CSSSEEEE
T ss_pred             EEEEECCCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCH---H---HHHHcCC-CccCEEEE
Confidence            6779999999999888777553    2  344445555432   2   3333454 88999866

>3cbu_A Probable GST-related protein; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics; 2.05A {Ralstonia eutropha}

Probab=98.21  E-value=7.9e-06  Score=53.68  Aligned_cols=67  Identities=4%  Similarity=-0.145  Sum_probs=53.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .+++|+.+.||+|.+++-+|...|++|+.+.++......+   +    +...++|++..+|..+.+...+....
T Consensus         2 m~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~---~----~P~g~vP~L~~~~~~l~eS~aI~~yL   68 (214)
T 3cbu_A            2 MLKLCGFAASNYYNKVKLALLEKNVPFEEVLAWIGETDTT---A----TPAGKVPYMITESGSLCESEVINEYL   68 (214)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHHTCCEEEEECCTTSSCTT---T----STTCCSCEEEETTEEECSHHHHHHHH
T ss_pred             eEEEecCCCCcHhHHHHHHHHhCCCCCEEEecCcccCCcc---c----CCCCCCCEEEECCeeeecHHHHHHHH
Confidence            3789999999999999999999999999998885222222   2    44578999999998888877766643

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=1.2e-06  Score=54.30  Aligned_cols=58  Identities=12%  Similarity=0.176  Sum_probs=36.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C-CCceEEEcccCCCchHHHHHHHHhCCCC------CccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G-ANPTVYELDQIPNGPQIERALQQLGCQP------TVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~-v~~~~v~vd~~~~~~~~~~~l~~~~~~~------tvP~ifv--~g~~i   75 (106)
                      ++.|+.+|||+|+++...|.+.    . -.+..+.||.+... +   ...+++. .      .+|++++  +|+.+
T Consensus        30 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~-~---~~~~~~v-~~~~~~~~~Pt~~~~~~G~~~  100 (137)
T 2dj0_A           30 IVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYT-D---VSTRYKV-STSPLTKQLPTLILFQGGKEA  100 (137)
T ss_dssp             EEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCH-H---HHHHTTC-CCCSSSSCSSEEEEESSSSEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCH-H---HHHHccC-cccCCcCCCCEEEEEECCEEE
Confidence            7889999999999888777553    2 13444444443332 2   3333443 4      8999754  77654

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=98.19  E-value=4e-06  Score=52.66  Aligned_cols=56  Identities=13%  Similarity=0.206  Sum_probs=38.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~i   75 (106)
                      ++.|+.+|||+|+.....|.+.      ++.+-.+|+|.+++..+      +++ ..++|++  |.+|+.+
T Consensus        27 lv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~------~~~-i~~~Pt~~~~~~G~~v   90 (142)
T 1qgv_A           27 VIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNK------MYE-LYDPCTVMFFFRNKHI   90 (142)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTT------SSC-SCSSCEEEEEETTEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHHHH------HcC-CCCCCEEEEEECCcEE
Confidence            4569999999999998888653      24455677776654222      223 4789997  5688766

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=98.18  E-value=3.3e-06  Score=52.18  Aligned_cols=51  Identities=16%  Similarity=0.378  Sum_probs=33.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++.|+.+|||+|.+....|.+.    +  +.+..+|++.++   +   ....++ ...+|++++
T Consensus        55 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~---~~~~~~-v~~~Pt~~~  111 (141)
T 3hxs_A           55 IVDFYADWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEP---E---LARDFG-IQSIPTIWF  111 (141)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---H---HHHHTT-CCSSSEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCH---H---HHHHcC-CCCcCEEEE
Confidence            5669999999999988887654    3  334445554432   2   333344 488999865

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=98.17  E-value=1.1e-06  Score=55.67  Aligned_cols=56  Identities=18%  Similarity=0.348  Sum_probs=36.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~i   75 (106)
                      ++.|+.+|||+|+.....|.+..      +.+-.+|+|..++      ....++ ..++|++  |.+|+.+
T Consensus        27 lv~F~a~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~------l~~~~~-v~~~Pt~~~~~~G~~v   90 (149)
T 3gix_A           27 VLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAV------YTQYFD-ISYIPSTVFFFNGQHM   90 (149)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCH------HHHHTT-CCSSSEEEEEETTEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHH------HHHHcC-CCccCeEEEEECCeEE
Confidence            44599999999999998887653      2333455554432      223334 4788886  4577666

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.16  E-value=3.2e-06  Score=56.99  Aligned_cols=80  Identities=13%  Similarity=0.137  Sum_probs=49.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecchHHHhH-
Q 042938           13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGPNQVMSL-   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~~~~~~~-   84 (106)
                      ++.|+.+|||+|..+...|.++.     +.|-.+|++ ++.      .... .+..++|++  |.+|+.++.+.-.... 
T Consensus       124 vV~F~a~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~~------l~~~-~~i~~~PTl~~~~~G~~v~~~~G~~~~~  195 (217)
T 2trc_P          124 VVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NTG------AGDR-FSSDVLPTLLVYKGGELISNFISVAEQF  195 (217)
T ss_dssp             EEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HHT------CSTT-SCGGGCSEEEEEETTEEEEEETTGGGGS
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cHH------HHHH-CCCCCCCEEEEEECCEEEEEEeCCcccC
Confidence            56699999999999999987753     445556665 211      1112 234788975  5588776533322221 


Q ss_pred             ---HHhCCchHHHHhcCce
Q 042938           85 ---HVQNELGPLLVRAGAI  100 (106)
Q Consensus        85 ---~~~g~L~~~L~~~g~~  100 (106)
                         ....+|..+|.+.|++
T Consensus       196 g~~~~~~~Le~~L~~~g~l  214 (217)
T 2trc_P          196 AEDFFAADVESFLNEYGLL  214 (217)
T ss_dssp             CSSCCHHHHHHHHHTTTCS
T ss_pred             cccCCHHHHHHHHHHcCCC
Confidence               0013588888888876

>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ...

Probab=98.16  E-value=2.3e-05  Score=51.91  Aligned_cols=71  Identities=11%  Similarity=0.011  Sum_probs=55.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh--CCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL--GCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~--~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ..+++|+.+.||+|.+++-+|...|++|+.+.++..   .+..+ +...  +...++|++..||..+.....+....
T Consensus         2 ~~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~---~~~~~-~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~yL   74 (221)
T 1k3y_A            2 EKPKLHYFNARGRMESTRWLLAAAGVEFEEKFIKSA---EDLDK-LRNDGYLMFQQVPMVEIDGMKLVQTRAILNYI   74 (221)
T ss_dssp             CCCEEEEESSSTTTHHHHHHHHHHTCCCEEEEECSH---HHHHH-HHHTTCCTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCcEEEEeCCCchhHHHHHHHHHcCCCceEEEeCch---hHHHH-HhhhcCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            467899999999999999999999999999988732   22222 3333  55578999999999888887776643

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=98.15  E-value=1.9e-05  Score=48.62  Aligned_cols=60  Identities=10%  Similarity=0.109  Sum_probs=36.2

Q ss_pred             EEEEEcCCCchHHHHHHHH-------hhc-CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE---CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLI-------CGF-GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI---GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L-------~~~-~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv---~g~~i   75 (106)
                      ++.|+.+|||+|.+....+       +.+ ++.+..+|++...  ....+....++ ..++|++++   +|+.+
T Consensus        35 lv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~--~~~~~l~~~~~-v~~~Pt~~~~d~~G~~v  105 (134)
T 2fwh_A           35 MLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTAND--AQDVALLKHLN-VLGLPTILFFDGQGQEH  105 (134)
T ss_dssp             EEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCC--HHHHHHHHHTT-CCSSSEEEEECTTSCBC
T ss_pred             EEEEECCCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCc--chHHHHHHHcC-CCCCCEEEEECCCCCEe
Confidence            5668999999999876544       222 3444455555432  22334444445 488999753   57654

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=98.15  E-value=3.7e-06  Score=50.68  Aligned_cols=51  Identities=22%  Similarity=0.255  Sum_probs=34.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++.|+.+|||+|.++...|.+.      ++.+..+|++..+   +   ...+++ ..++|++++
T Consensus        25 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~---~---~~~~~~-v~~~Pt~~~   81 (122)
T 3aps_A           25 VVDFYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYP---Q---TCQKAG-IKAYPSVKL   81 (122)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCH---H---HHHHTT-CCSSSEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCH---H---HHHHcC-CCccceEEE
Confidence            6779999999999998888653      3455555665432   1   333334 488999854

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=98.14  E-value=1.5e-05  Score=58.43  Aligned_cols=73  Identities=15%  Similarity=0.095  Sum_probs=57.7

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHH
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLH   85 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~   85 (106)
                      .+.++++|+.+.||+|.+++-+|...|++|+.+.++.....++   + ...+...++|++.+ ||..+.....+....
T Consensus       249 ~~~~~~L~~~~~sp~~~rv~~~L~~~gi~y~~~~v~~~~~~~~---~-~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL  322 (471)
T 4ags_A          249 ANGGHVLYSNLFCPFVDRARLASELRKFQMHIVEVPLHPQPEW---Y-KYINPRDTVPALFTPSGEAVHESQLIVQYI  322 (471)
T ss_dssp             GTTSCEEEECTTCHHHHHHHHHHHHTTCCCEEEECCCSSCCTT---H-HHHCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             CCCcEEEEecCCCchHHHHHHHHHHCCCCcEEEEecCCcCcHH---H-HHhCCCCCcCeEEeCCCcEeecHHHHHHHH
Confidence            4567999999999999999999999999999999886543333   2 23355579999986 888888877776654

>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5

Probab=98.14  E-value=3.8e-05  Score=50.98  Aligned_cols=73  Identities=14%  Similarity=0.033  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC----chHHHHHHHHh----CCCCCccEEEECCeEeecchHH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN----GPQIERALQQL----GCQPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~----~~~~~~~l~~~----~~~~tvP~ifv~g~~iGg~~~~   81 (106)
                      ..++++|+-+.||+|.+++-+|...|++|+.+.++....    ..+   .+...    +...++|++..||..+.....+
T Consensus         3 ~~~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~---~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI   79 (224)
T 3gtu_B            3 ESSMVLGYWDIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQ---WLDVKFKLDLDFPNLPYLLDGKNKITQSNAI   79 (224)
T ss_dssp             CCCEEEEEESSSGGGHHHHHHHHHTTCCEEEEEECCCCSSSCCCHH---HHHHHTTSCCSSCCSSEEEETTEEEESHHHH
T ss_pred             CCCcEEEEeCCCcchHHHHHHHHHcCCCceEEEeecCCcccccHHH---HHhhhhhcCCCCCCCCEEEECCEEeecHHHH
Confidence            457899999999999999999999999999988875431    222   33322    3456899998888888887776


Q ss_pred             HhHH
Q 042938           82 MSLH   85 (106)
Q Consensus        82 ~~~~   85 (106)
                      ....
T Consensus        80 ~~yL   83 (224)
T 3gtu_B           80 LRYI   83 (224)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.13  E-value=1.5e-05  Score=48.16  Aligned_cols=32  Identities=13%  Similarity=0.026  Sum_probs=22.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcc
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd   44 (106)
                      ++.|+.+|||+|.+....|.+.     ++.+-.++++
T Consensus        29 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~   65 (136)
T 1zzo_A           29 VLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGL   65 (136)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECS
T ss_pred             EEEEEcCCChhHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence            5668999999999887777554     3444445554

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.13  E-value=6.8e-06  Score=52.61  Aligned_cols=66  Identities=12%  Similarity=0.158  Sum_probs=40.4

Q ss_pred             HHhhhhC-CCE-EEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-E--C
Q 042938            4 VTRMVNE-KPV-VIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-I--G   71 (106)
Q Consensus         4 ~~~~~~~-~~v-~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v--~   71 (106)
                      ++.+... .+| +.|+.+||++|+.....+.+.       +..|..+++|.++...     ...+++ ..+|+++ +  +
T Consensus        37 l~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~-----~~~~~v-~~~PT~~f~~~~  110 (151)
T 3ph9_A           37 LFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDK-----NLSPDG-QYVPRIMFVDPS  110 (151)
T ss_dssp             HHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCG-----GGCTTC-CCSSEEEEECTT
T ss_pred             HHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhh-----HhhcCC-CCCCEEEEECCC
Confidence            3344333 344 558999999999988877542       3468888987432211     112243 7899975 3  5


Q ss_pred             CeEe
Q 042938           72 QRLV   75 (106)
Q Consensus        72 g~~i   75 (106)
                      |+.+
T Consensus       111 G~~v  114 (151)
T 3ph9_A          111 LTVR  114 (151)
T ss_dssp             SCBC
T ss_pred             CCEE
Confidence            6543

>1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A

Probab=98.12  E-value=3.3e-05  Score=51.55  Aligned_cols=71  Identities=20%  Similarity=0.083  Sum_probs=55.5

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh--CCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL--GCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~--~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ..+++|+.+.||+|.+++-+|...|++|+.+.++..   .+..+ +...  +...++|++..||..+.....+....
T Consensus         3 ~~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~---~~~~~-~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL   75 (229)
T 1vf1_A            3 AKPVLYYFNGRGKMESIRWLLAAAGVEFEEVFLETR---EQYEK-LLQSGILMFQQVPMVEIDGMKLVQTRAILNYI   75 (229)
T ss_dssp             CCCEEEECSSCTTTHHHHHHHHHTTCCCEEEECCSH---HHHHH-HHHHTCSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCeEEEEeCCCchhHHHHHHHHHcCCCCeeEecCcH---HHHHH-HHHhcCCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            468999999999999999999999999999988732   22222 3333  55578999999999888887776643

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=97.39  E-value=3.8e-07  Score=55.81  Aligned_cols=59  Identities=19%  Similarity=0.293  Sum_probs=33.2

Q ss_pred             EEEEEcCCCchHHHHHHHH---hhc----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE----CCeE
Q 042938           13 VVIFSKSECCICFSIQTLI---CGF----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI----GQRL   74 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L---~~~----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv----~g~~   74 (106)
                      ++.|+.+|||+|++....+   .+.    +-.+..+.||.+.+...  +....++ ..++|++++    +|+.
T Consensus        23 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~--~~~~~~~-v~~~Pt~~~~d~~~G~~   92 (130)
T 2lst_A           23 MVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQ--ELARRYR-VPGTPTFVFLVPKAGAW   92 (130)
Confidence            5668999999999988766   332    22233333333211111  1222334 478999765    4765

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=98.10  E-value=3.9e-06  Score=51.18  Aligned_cols=62  Identities=10%  Similarity=0.109  Sum_probs=36.7

Q ss_pred             HHhhhh-CCC--EEEEEcCCCchHHHHHHHHhhcC---------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938            4 VTRMVN-EKP--VVIFSKSECCICFSIQTLICGFG---------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus         4 ~~~~~~-~~~--v~vf~~~~Cp~C~~~~~~L~~~~---------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      +.+.+. ..+  ++.|+.+||++|++....+.+..         -.+....||.+.. .+   ...+++ ..++|++++
T Consensus        25 f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~-~~---l~~~~~-v~~~Pt~~~   98 (127)
T 3h79_A           25 FDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKY-PD---VIERMR-VSGFPTMRY   98 (127)
T ss_dssp             HHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTC-HH---HHHHTT-CCSSSEEEE
T ss_pred             HHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcccc-Hh---HHHhcC-CccCCEEEE
Confidence            445452 233  56699999999999998887751         2233434443332 12   333344 488998743

>4id0_A Glutathione S-transferase-like protein YIBF; GST, enzyme function initiative, structural genomics; HET: GSF; 1.10A {Pseudomonas fluorescens} PDB: 4ibp_A*

Probab=98.10  E-value=1.6e-06  Score=57.06  Aligned_cols=74  Identities=12%  Similarity=0.068  Sum_probs=52.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-ECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~~~~~~~~   85 (106)
                      .+++|+.+.||+|.+++-+|...|++|+.+.++.........+.+...+...++|++. .||..+.....+....
T Consensus         2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   76 (214)
T 4id0_A            2 SLTLFHNPASPYVRKVMVLLHETGQLNRVALQASQLSPVAPDAALNQDNPLGKIPALRLDNGQVLYDSRVILDYL   76 (214)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHHTCGGGEEEEECCCCSSSCCSSCCTTCTTCCSSEEECTTSCEECSHHHHHHHH
T ss_pred             ceEEecCCCCChHHHHHHHHHHcCCCcceEEeecccCccCCcHHHHhcCCCcCCCeEEecCCcEeecHHHHHHHH
Confidence            3789999999999999999999999988776654321100001222335567999999 7888888877766544

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=98.10  E-value=5e-07  Score=58.74  Aligned_cols=51  Identities=12%  Similarity=0.075  Sum_probs=33.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhC--CCCCccEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLG--CQPTVPAVF   69 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~--~~~tvP~if   69 (106)
                      ++.|+.+|||+|+.....|.+.     ++.+..+++|.++      +...++.  +..++|+++
T Consensus        58 vv~F~A~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~------~~~~~~~~~~v~~iPt~i  115 (167)
T 1z6n_A           58 LLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRAE------DDLRQRLALERIAIPLVL  115 (167)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHH------HHTTTTTTCSSCCSSEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCH------HHHHHHHHcCCCCcCeEE
Confidence            6779999999999999888765     2344555555432      1222222  358999853

>1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5

Probab=98.09  E-value=1.2e-05  Score=53.09  Aligned_cols=68  Identities=9%  Similarity=-0.031  Sum_probs=53.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~   85 (106)
                      .++++|+ +.||+|.+++-+|...|++|+.+.++  ....    .+.+.+...++|++.. ||..+.+...+....
T Consensus         2 ~~~~Ly~-~~~~~~~~v~~~l~~~gi~~e~~~~~--~~~~----~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   70 (219)
T 1nhy_A            2 SQGTLYA-NFRIRTWVPRGLVKALKLDVKVVTPD--AAAE----QFARDFPLKKVPAFVGPKGYKLTEAMAINYYL   70 (219)
T ss_dssp             TTCEEEC-CSSHHHHHHHHHHHHHTCCCEEECGG--GCHH----HHHHHCTTCCSSEEECGGGCEEESHHHHHHHH
T ss_pred             CceEEec-CCCCChHHHHHHHHHcCCCceeeccc--CCCH----HHHHHCCCCCCCeEEcCCCCEEecHHHHHHHH
Confidence            4678999 77999999999999999999999887  1212    2334466678999998 888888877766543

>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET: GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1 c.47.1.5

Probab=98.08  E-value=2.3e-05  Score=53.42  Aligned_cols=71  Identities=8%  Similarity=-0.008  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +.++.+|+.+.||+|.+++-+|...|++|+.+.++.. ..   . .+...+...+||++..||..+.....+....
T Consensus        47 m~~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~-~~---~-e~~~~nP~gkVPvL~~~g~~l~ES~aI~~YL  117 (249)
T 1m0u_A           47 KHSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRD-EW---P-ALKPTMPMGQMPVLEVDGKRVHQSISMARFL  117 (249)
T ss_dssp             CCCEEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTT-TH---H-HHGGGSGGGCSCEEEETTEEEECHHHHHHHH
T ss_pred             CCCeEEEEcCCcccHHHHHHHHHHcCCCcEEEEeCHH-HH---H-HHhhcCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            4568999999999999999999999999999998842 21   1 2334455578999999999888887766543

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=98.08  E-value=6.6e-06  Score=50.84  Aligned_cols=55  Identities=11%  Similarity=0.234  Sum_probs=35.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE---CCeE
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI---GQRL   74 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv---~g~~   74 (106)
                      ++.|+.+|||+|.+....|.+.    +  +.+..+|++..+   +   ...+++ ..++|++++   +|+.
T Consensus        42 lv~f~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~---~---l~~~~~-v~~~Pt~~~~~~~G~~  105 (136)
T 2l5l_A           42 IVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQ---E---LAGAFG-IRSIPSILFIPMEGKP  105 (136)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---H---HHHHTT-CCSSCEEEEECSSSCC
T ss_pred             EEEEECCcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCH---H---HHHHcC-CCCCCEEEEECCCCcE
Confidence            6779999999999998888653    2  444455555432   1   333334 488999754   6754

>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A*

Probab=98.07  E-value=2.1e-05  Score=51.56  Aligned_cols=71  Identities=11%  Similarity=0.006  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC-----eEeecchHHHhH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ-----RLVGGPNQVMSL   84 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g-----~~iGg~~~~~~~   84 (106)
                      +..+++|+.+.||+|.+++-+|...|++|+.+.++.. ..   . .+...+...++|++..+|     ..+.+...+...
T Consensus         3 m~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~---~-~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~~y   77 (211)
T 2wb9_A            3 KQHFKLWYFQFRGRAEPIRLLLTCAGVKFEDYQFTMD-QW---P-TIKPTLPGGRVPLLDVTGPDGKLRRYQESMAIARL   77 (211)
T ss_dssp             CCEEEEEEESSCGGGHHHHHHHHHTTCCCEEEEECTT-TH---H-HHGGGSGGGCSCEEEEECTTSCEEEEESHHHHHHH
T ss_pred             CCceEEEEeCCCCchHHHHHHHHHcCCCceEEEechh-hH---H-HhCcCCCCCCCCEEEECCCCccceeecCHHHHHHH
Confidence            3468999999999999999999999999999998842 21   2 233455567899999888     888887776654


Q ss_pred             H
Q 042938           85 H   85 (106)
Q Consensus        85 ~   85 (106)
                      .
T Consensus        78 L   78 (211)
T 2wb9_A           78 L   78 (211)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus} SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A*

Probab=98.06  E-value=1.9e-05  Score=51.80  Aligned_cols=69  Identities=6%  Similarity=-0.040  Sum_probs=54.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++++|+.+.||+|.+++-+|...|++|+.+.++..+. .+   + ...+...++|++..||..+.+...+....
T Consensus         2 ~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~-~~---~-~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   70 (208)
T 1tu7_A            2 SYKLTYFSIRGLAEPIRLFLVDQDIKFIDDRIAKDDF-SS---I-KSQFQFGQLPCLYDGDQQIVQSGAILRHL   70 (208)
T ss_dssp             CEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGGGS-TT---T-GGGSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CcEEEEcCCCcchHHHHHHHHHcCCCceEEEEcHHHH-HH---h-ccCCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            5789999999999999999999999999988875321 11   2 23455578999999999888887766643

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.06  E-value=7e-05  Score=46.47  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=23.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC----CCceEEEcc
Q 042938           13 VVIFSKSECCICFSIQTLICGFG----ANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~v~vd   44 (106)
                      ++.|+.+|||+|.+....|.+..    +.+-.++++
T Consensus        46 ll~f~~~~C~~C~~~~~~l~~l~~~~~v~~v~v~~~   81 (156)
T 1kng_A           46 LVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYK   81 (156)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHTTCTTSEEEEEEES
T ss_pred             EEEEEcccCHhHHHHHHHHHHHHhcCCeEEEEEECC
Confidence            66789999999999888887653    444444444

>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A

Probab=98.04  E-value=1.8e-05  Score=52.56  Aligned_cols=71  Identities=18%  Similarity=0.079  Sum_probs=54.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh--CCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL--GCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~--~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ..+++|+.+.||+|.+++-+|...|++|+.+.++..   .+..+ +...  +...++|++..||..+.....+....
T Consensus         2 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~---~~~~~-~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL   74 (221)
T 1b48_A            2 AKPKLYYFNGRGRMESIRWLLAAAGVEFEEEFLETR---EQYEK-MQKDGHLLFGQVPLVEIDGMMLTQTRAILSYL   74 (221)
T ss_dssp             CCCEEEBCSSCTTTHHHHHHHHHHTCCCCCCBCCCH---HHHHH-HHTTTCSSSSCSCEEEETTEEECCHHHHHHHH
T ss_pred             CceEEEEeCCCcchHHHHHHHHHcCCCceEEEeCch---HhHHH-HHhcCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            468899999999999999999999999998887631   22222 3333  55578999999999888887766543

>3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis}

Probab=98.03  E-value=1.6e-05  Score=52.56  Aligned_cols=73  Identities=10%  Similarity=-0.088  Sum_probs=52.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +++|+.+.||+|.+++-+|...|++|+.+.++.....+.........+...++|++..||..+.+...+....
T Consensus         3 ~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~d~~~~l~eS~aI~~yL   75 (218)
T 3iso_A            3 PVLGYWKIRGLAQPIRLLLEYVGDSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYKDGNFSLTQSLAILRYI   75 (218)
T ss_dssp             CEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEEETTEEEESHHHHHHHH
T ss_pred             cEEEEeCCCcchHHHHHHHHHcCCCceeeccCCCCHHHHHhhchhcCCCCCCCCeEEECCEEEecHHHHHHHH
Confidence            6788889999999999999999999999999722221211111111134468999998888888877766543

>4exj_A Uncharacterized protein; transferase-like protein, transcription regulation, transfer structural genomics; 1.64A {Lodderomyces elongisporus nrrl yb-4239}

Probab=98.02  E-value=3.8e-05  Score=51.53  Aligned_cols=70  Identities=13%  Similarity=0.001  Sum_probs=51.7

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLH   85 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~   85 (106)
                      ++|+.+ ||+|.+++-+|...|++|+.+.++....... .+.+.+.+...++|++.. ||..+.....+....
T Consensus         5 lLy~~~-s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~-~~~~~~~~P~g~vPvL~~~dg~~l~eS~aI~~yL   75 (238)
T 4exj_A            5 ILYTGP-TGNGRKPLVLGKLLNAPIKVHMFHWPTKDIQ-EDWYLKLNPAGIVPTLVDDKGTPITESNNILLYI   75 (238)
T ss_dssp             EEEECS-STTTHHHHHHHHHTTCSEEEEECC-CCSGGG-SHHHHHHCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             eEeeCC-CCchHHHHHHHHHcCCCceEEEecccCCccC-CHHHHhhCCCCCCCEEEeCCCcEEeeHHHHHHHH
Confidence            389988 9999999999999999999998886432111 123334466689999988 468888877766543

>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A*

Probab=98.01  E-value=3.4e-05  Score=51.03  Aligned_cols=71  Identities=14%  Similarity=0.014  Sum_probs=53.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhC--CCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG--CQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~--~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .++++|+.+.||+|.+++-+|...|++|+.+.++..   ++.. .+...+  ...++|++..||..+.....+....
T Consensus         3 ~~~~Ly~~~~s~~~~~v~~~L~~~gi~ye~~~v~~~---~~~~-~~~p~~~~p~g~vP~L~~~g~~l~eS~aI~~yL   75 (222)
T 3ik7_A            3 ARPKLHYPNGRGRMESVRWVLAAAGVEFDEEFLETK---EQLY-KLQDGNHLLFQQVPMVEIDGMKLVQTRSILHYI   75 (222)
T ss_dssp             CSCEEEECSSCTTTHHHHHHHHHTTCCCEEEECCSH---HHHH-HHHHTTCSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCcEEEEeCCCcchHHHHHHHHHcCCCeeEEeeCcH---HHHH-HhhhcCCCCCCCCCEEEECCEEeehHHHHHHHH
Confidence            368999999999999999999999999999988752   2211 122211  1368999999999998887776543

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.01  E-value=1.4e-05  Score=53.47  Aligned_cols=56  Identities=18%  Similarity=0.331  Sum_probs=38.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      ++.|+.+|||+|+.....|.++    +  +.+..+|++..++..+      +++ ..++|++++  +|+.+
T Consensus        34 vv~F~a~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~------~~~-v~~~Pt~~~~~~G~~~   97 (222)
T 3dxb_A           34 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAP------KYG-IRGIPTLLLFKNGEVA   97 (222)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTGG------GGT-CCSBSEEEEEETTEEE
T ss_pred             EEEEECCcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHHH------HcC-CCcCCEEEEEECCeEE
Confidence            4559999999999998887554    3  4455667766554322      234 478999766  88654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.01  E-value=5.3e-06  Score=57.11  Aligned_cols=65  Identities=14%  Similarity=0.332  Sum_probs=41.1

Q ss_pred             HHhhhhC---CC-EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--C
Q 042938            4 VTRMVNE---KP-VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--G   71 (106)
Q Consensus         4 ~~~~~~~---~~-v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~   71 (106)
                      +++.+..   .+ ++.|+.+|||+|+.....|.+.    +  +.+-.+|++.++      +....++ ..++|++++  +
T Consensus        17 f~~~~~~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~------~~~~~~~-v~~~Pt~~~~~~   89 (287)
T 3qou_A           17 LQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQ------MIAAQFG-LRAIPTVYLFQN   89 (287)
T ss_dssp             HHHHHTTTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCH------HHHHTTT-CCSSSEEEEEET
T ss_pred             HHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCH------HHHHHcC-CCCCCeEEEEEC
Confidence            4455542   33 5669999999999888777653    2  445556665432      2333344 489999754  8


Q ss_pred             CeEe
Q 042938           72 QRLV   75 (106)
Q Consensus        72 g~~i   75 (106)
                      |+.+
T Consensus        90 G~~~   93 (287)
T 3qou_A           90 GQPV   93 (287)
T ss_dssp             TEEE
T ss_pred             CEEE
Confidence            8654

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.00  E-value=5.9e-06  Score=52.48  Aligned_cols=68  Identities=16%  Similarity=0.138  Sum_probs=42.4

Q ss_pred             HHhhhh-CCCE-EEEEcCC--CchHHHHHHHHhhcC-------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EE
Q 042938            4 VTRMVN-EKPV-VIFSKSE--CCICFSIQTLICGFG-------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FI   70 (106)
Q Consensus         4 ~~~~~~-~~~v-~vf~~~~--Cp~C~~~~~~L~~~~-------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv   70 (106)
                      +.+.+. ..++ +.|+.+|  |+.|+.+..+|+++.       +.+-.+|+|.++      +...+++ .+++|++  |-
T Consensus        27 F~~~v~~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~------~lA~~yg-V~sIPTlilFk   99 (140)
T 2qgv_A           27 LDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSE------AIGDRFG-AFRFPATLVFT   99 (140)
T ss_dssp             HHHHHHTCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHH------HHHHHHT-CCSSSEEEEEE
T ss_pred             HHHHHhCCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCH------HHHHHcC-CccCCEEEEEE
Confidence            344443 3344 4567777  999999999997753       334445555433      2333345 4889985  78


Q ss_pred             CCeEeecc
Q 042938           71 GQRLVGGP   78 (106)
Q Consensus        71 ~g~~iGg~   78 (106)
                      ||+.++-.
T Consensus       100 ~G~~v~~~  107 (140)
T 2qgv_A          100 GGNYRGVL  107 (140)
T ss_dssp             TTEEEEEE
T ss_pred             CCEEEEEE
Confidence            99877643

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=98.00  E-value=1.7e-05  Score=47.57  Aligned_cols=48  Identities=8%  Similarity=0.077  Sum_probs=33.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-----------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF-----------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-----------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++.|+.+|||+|++....|.+.           ++.+..+|++..+-        .+  +..++|++++
T Consensus        29 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~--------~~--~v~~~Pt~~~   87 (121)
T 2djj_A           29 LIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDV--------PD--EIQGFPTIKL   87 (121)
T ss_dssp             EEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSCC--------SS--CCSSSSEEEE
T ss_pred             EEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccccc--------cc--ccCcCCeEEE
Confidence            6779999999999998887653           24455566665441        11  4578999864

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=97.99  E-value=8.3e-06  Score=51.61  Aligned_cols=58  Identities=10%  Similarity=0.153  Sum_probs=39.5

Q ss_pred             EEEEEcCCC--chHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeec
Q 042938           13 VVIFSKSEC--CICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGG   77 (106)
Q Consensus        13 v~vf~~~~C--p~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg   77 (106)
                      ++.|+.+||  +.|+.+..+|+++.      +.+-.+|+|.+++      ...+++ .+++|++  |-||+.++-
T Consensus        37 lVdF~A~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~------la~~yg-V~siPTlilFkdG~~v~~  104 (137)
T 2qsi_A           37 VLFFRGDAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERG------LMARFG-VAVCPSLAVVQPERTLGV  104 (137)
T ss_dssp             EEEECCCTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHH------HHHHHT-CCSSSEEEEEECCEEEEE
T ss_pred             EEEEeCCccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHH------HHHHcC-CccCCEEEEEECCEEEEE
Confidence            455888999  99999999997753      3344566665432      333335 4889986  789987653

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=97.98  E-value=8.7e-06  Score=49.59  Aligned_cols=61  Identities=16%  Similarity=0.229  Sum_probs=37.3

Q ss_pred             EEEEEcC-------CCchHHHHHHHHhhc------CCCceEEEccc-----CCCchHHHHHHHHhCCCCCccEEEE--CC
Q 042938           13 VVIFSKS-------ECCICFSIQTLICGF------GANPTVYELDQ-----IPNGPQIERALQQLGCQPTVPAVFI--GQ   72 (106)
Q Consensus        13 v~vf~~~-------~Cp~C~~~~~~L~~~------~v~~~~v~vd~-----~~~~~~~~~~l~~~~~~~tvP~ifv--~g   72 (106)
                      ++.|+.+       |||+|.+....|.+.      ++.+..+|++.     ++. .+   ...+++. .++|++++  ++
T Consensus        28 ~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~-~~---~~~~~~i-~~~Pt~~~~~~~  102 (123)
T 1wou_A           28 FAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPN-ND---FRKNLKV-TAVPTLLKYGTP  102 (123)
T ss_dssp             EEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTT-CH---HHHHHCC-CSSSEEEETTSS
T ss_pred             EEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchh-HH---HHHHCCC-CeeCEEEEEcCC
Confidence            5669999       999999999888663      34445556631     222 22   2233454 88999865  33


Q ss_pred             eEeecc
Q 042938           73 RLVGGP   78 (106)
Q Consensus        73 ~~iGg~   78 (106)
                      ..+.|.
T Consensus       103 ~~~~g~  108 (123)
T 1wou_A          103 QKLVES  108 (123)
T ss_dssp             CEEEGG
T ss_pred             ceEecc
Confidence            444444

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=97.98  E-value=4.4e-05  Score=46.78  Aligned_cols=33  Identities=15%  Similarity=0.338  Sum_probs=22.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEccc
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQ   45 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~   45 (106)
                      ++.|+.+|||+|.+....|.+.    +  +.+-.++++.
T Consensus        33 lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~   71 (148)
T 2b5x_A           33 LIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPR   71 (148)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCC
T ss_pred             EEEEEcCCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCC
Confidence            6678999999999887776543    3  4444455543

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=97.98  E-value=8.1e-05  Score=45.00  Aligned_cols=22  Identities=18%  Similarity=0.294  Sum_probs=17.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+|||+|.+....|.+.
T Consensus        28 lv~f~~~~C~~C~~~~~~l~~~   49 (136)
T 1lu4_A           28 VLWFWTPWCPFCNAEAPSLSQV   49 (136)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEECCcChhHHHHHHHHHHH
Confidence            5668999999999887766543

>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ...

Probab=97.98  E-value=7.7e-05  Score=49.18  Aligned_cols=71  Identities=11%  Similarity=0.017  Sum_probs=53.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC---chHHHHHHHHhC----CCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN---GPQIERALQQLG----CQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~---~~~~~~~l~~~~----~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +++|+.+.||+|.+++-+|...|++|+.+.++....   ...  +.+...+    ...++|++..||..+.....+....
T Consensus         3 ~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~--~~~~~~~~~g~P~g~vP~L~d~~~~l~eS~aI~~yL   80 (218)
T 2c4j_A            3 MTLGYWNIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRS--QWLNEKFKLGLDFPNLPYLIDGTHKITQSNAILRYI   80 (218)
T ss_dssp             EEEEEESSSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCH--HHHTTTTSSCCSSCCSSEEEETTEEEESHHHHHHHH
T ss_pred             cEEEEeCCCchhHHHHHHHHHcCCCceEEEeecCcccccchh--HHhhhccccCCCCCCCCEEEECCeEeeeHHHHHHHH
Confidence            788999999999999999999999999988876432   111  2433222    3468999998888888887766643

>3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli}

Probab=97.97  E-value=4.4e-05  Score=50.12  Aligned_cols=70  Identities=7%  Similarity=0.054  Sum_probs=53.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC---C----eEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG---Q----RLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~---g----~~iGg~~~~~~~   84 (106)
                      +++|+.+ ||+|.+++-+|...|++|+.+.++....... .+.+...+...++|++..+   |    ..+.....+...
T Consensus         2 ~~Ly~~~-s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~-~~~~~~~~P~g~vP~L~~~~~~~dG~~~~l~eS~aI~~y   78 (215)
T 3gx0_A            2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQF-RPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLY   78 (215)
T ss_dssp             EEEEECS-SHHHHHHHHHHHHHTCCEEEEECCTTTTGGG-SHHHHTTCTTSCSCEEEESSCTTCCSCEEEESHHHHHHH
T ss_pred             eEEEeCC-CCChHHHHHHHHHcCCCcEEEecCCCCCCCC-ChHHHHhCCCCCCCEEEeCCCCCCCCceEEEcHHHHHHH
Confidence            6789888 9999999999999999999998886542211 1234455666789999998   4    788887776654

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=97.96  E-value=7.7e-06  Score=50.35  Aligned_cols=60  Identities=13%  Similarity=0.205  Sum_probs=38.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHh-hcC-------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee
Q 042938           12 PVVIFSKSECCICFSIQTLIC-GFG-------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG   76 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~-~~~-------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG   76 (106)
                      -++.|+.+|||+|+++...+. ...       +++..+||+.++....     ....+..++|++  |-+|+.++
T Consensus        21 ~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~l-----a~~~~V~g~PT~i~f~~G~ev~   90 (116)
T 3dml_A           21 RLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGL-----ELARPVTFTPTFVLMAGDVESG   90 (116)
T ss_dssp             EEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTC-----BCSSCCCSSSEEEEEETTEEEE
T ss_pred             EEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhH-----HHHCCCCCCCEEEEEECCEEEe
Confidence            378899999999999876553 333       4566778887632111     111234678886  56897665

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=97.96  E-value=1.5e-05  Score=52.82  Aligned_cols=54  Identities=19%  Similarity=0.294  Sum_probs=36.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCe
Q 042938           13 VVIFSKSECCICFSIQTLICGF----------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQR   73 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~   73 (106)
                      ++.|+.+|||+|++....+.+.          ++.+..+|++.+++      ...+++ ..++|++++  +|+
T Consensus       138 ~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~------l~~~~~-v~~~Pt~~~~~~G~  203 (226)
T 1a8l_A          138 ILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE------WADQYN-VMAVPKIVIQVNGE  203 (226)
T ss_dssp             EEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH------HHHHTT-CCSSCEEEEEETTE
T ss_pred             EEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHH------HHHhCC-CcccCeEEEEeCCc
Confidence            6779999999999998888663          35555666664321      223334 488999866  554

>2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification; HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A

Probab=97.96  E-value=1.1e-05  Score=53.96  Aligned_cols=70  Identities=10%  Similarity=0.060  Sum_probs=54.5

Q ss_pred             CEEEEEcCCC-----chHHHHHHHHhhcCCCceEEEcccCC-CchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSEC-----CICFSIQTLICGFGANPTVYELDQIP-NGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~C-----p~C~~~~~~L~~~~v~~~~v~vd~~~-~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++++|+.+.|     |+|.+++-+|...|++|+.+.++... ...    .+...+...++|++..||..+.+...+....
T Consensus        18 ~~~Ly~~~~s~~~~~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~----~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   93 (230)
T 2ycd_A           18 TITVFERSPDGGRGLARDMPVRWALEEVGQPYHVRRLSFEAMKEA----SHLAYQPFGQIPSYEQGDLILFESGAIVMHI   93 (230)
T ss_dssp             EEEEESSCTTTTSSCSTHHHHHHHHHHHTCCCEEEEECHHHHTST----TGGGTCTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             eEEEecCCCccccCCCccHHHHHHHHHcCCCceEEEeCccccCCH----HHHhcCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            4899999999     99999999999999999998887421 111    1223355679999999999998887776654

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=97.95  E-value=0.00014  Score=45.70  Aligned_cols=22  Identities=18%  Similarity=0.430  Sum_probs=17.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+|||+|.+....|.++
T Consensus        41 lv~F~~~~C~~C~~~~~~l~~l   62 (165)
T 3ha9_A           41 ILWFMAAWCPSCVYMADLLDRL   62 (165)
T ss_dssp             EEEEECTTCTTHHHHHHHHHHH
T ss_pred             EEEEECCCCcchhhhHHHHHHH
Confidence            5668999999999877666543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=97.95  E-value=2.5e-05  Score=52.06  Aligned_cols=65  Identities=11%  Similarity=0.116  Sum_probs=41.5

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-------C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE--E
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF-------G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF--I   70 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-------~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if--v   70 (106)
                      +++++..++  ++.|+.+||++|++....|.+.       +  +.+..+|++..+   +   ...+++ ..++|+++  -
T Consensus        25 ~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~---~---l~~~~~-v~~~Pt~~~~~   97 (241)
T 3idv_A           25 FDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSAS---V---LASRFD-VSGYPTIKILK   97 (241)
T ss_dssp             HHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCH---H---HHHHTT-CCSSSEEEEEE
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCH---H---HHHhcC-CCcCCEEEEEc
Confidence            455665555  5669999999999988777554       2  455555555432   2   333344 48899974  4


Q ss_pred             CCeEe
Q 042938           71 GQRLV   75 (106)
Q Consensus        71 ~g~~i   75 (106)
                      +|+.+
T Consensus        98 ~g~~~  102 (241)
T 3idv_A           98 KGQAV  102 (241)
T ss_dssp             TTEEE
T ss_pred             CCCcc
Confidence            77654

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=97.95  E-value=6.7e-05  Score=46.99  Aligned_cols=47  Identities=15%  Similarity=0.135  Sum_probs=29.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C-CCceEEEcccCCCchHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G-ANPTVYELDQIPNGPQIERALQQL   59 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~-v~~~~v~vd~~~~~~~~~~~l~~~   59 (106)
                      ++.|+.+|||+|......|.+.    + ..+..+-|+.+++...+++++.+.
T Consensus        38 lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~   89 (165)
T 3or5_A           38 IVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQ   89 (165)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHH
T ss_pred             EEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHc
Confidence            5668999999999887777553    2 124455554444444555555444

>4ikh_A Glutathione S-transferase; enzyme function initiative, EFI, structural genomics; HET: GSH; 2.10A {Pseudomonas protegens}

Probab=97.95  E-value=3.2e-05  Score=51.87  Aligned_cols=72  Identities=7%  Similarity=0.083  Sum_probs=53.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE----CC--eEeecchHHHhH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI----GQ--RLVGGPNQVMSL   84 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv----~g--~~iGg~~~~~~~   84 (106)
                      ..+++|+.+ ||+|.+++-+|...|++|+.+.++....... .+.+.+.+...++|++..    ||  ..+.....+...
T Consensus        21 ~~~~Ly~~~-~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~-~~~~~~~nP~g~vP~L~~~dg~dG~~~~l~eS~aI~~y   98 (244)
T 4ikh_A           21 EWIQLYSLP-TPNGVKVSIMLEEIGLPYEAHRVSFETQDQM-TPEFLSVSPNNKIPAILDPHGPGDQPLALFESGAILIY   98 (244)
T ss_dssp             TSEEEEECS-SHHHHHHHHHHHHHTCCEEEEECCTTTTTTS-SHHHHTTCTTSCSCEEEETTCGGGCCEEEESHHHHHHH
T ss_pred             CeeEEEeCC-CCChHHHHHHHHHcCCCceEEEecCCCCCcC-ChHHHhcCCCCCCCEEEecCCCCCCceeEEcHHHHHHH
Confidence            469999999 9999999999999999999988875432111 123445566678999998    35  677777766554

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=97.95  E-value=8e-05  Score=46.37  Aligned_cols=21  Identities=19%  Similarity=0.285  Sum_probs=16.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|......|.+
T Consensus        33 ll~F~a~~C~~C~~~~~~l~~   53 (152)
T 2lrn_A           33 LVDFWFAGCSWCRKETPYLLK   53 (152)
T ss_dssp             EEEEECTTCTTHHHHHHHHHH
T ss_pred             EEEEECCCChhHHHHHHHHHH
Confidence            566899999999987766644

>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold, metal transport; 1.70A {Drosophila melanogaster}

Probab=97.95  E-value=2.9e-05  Score=53.36  Aligned_cols=72  Identities=10%  Similarity=0.016  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC---------CCchHHHHHHHH----hhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938           10 EKPVVIFSKS---------ECCICFSIQTLI----CGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus        10 ~~~v~vf~~~---------~Cp~C~~~~~~L----~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      +..+++|+..         .||+|.+++.+|    ...|++|+.+.++......    .+.+.+...+||++..||..+.
T Consensus        20 ~~~i~Ly~~~~s~~~~~~~~cP~~~rv~~~L~ll~~~~gi~ye~~~v~~~~~~~----~~~~~nP~gkVPvL~d~g~~l~   95 (260)
T 2yv7_A           20 VPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQKPPP----DFRTNFEATHPPILIDNGLAIL   95 (260)
T ss_dssp             CCEEEEEEEBCTTTSSSBCCCHHHHHHHHHHHHHHHTTSSEEEEEEECTTSCC---------CCTTCCSCEEEETTEEEC
T ss_pred             CccEEEEEeccCCCCCccCcChHHHHHHHHHHhHHHhcCCCceEEEeccccCCH----HHHhhCCCCCCCEEEECCEEEe
Confidence            4568999542         589999999999    8899999998887643222    2333466689999999999888


Q ss_pred             cchHHHhHH
Q 042938           77 GPNQVMSLH   85 (106)
Q Consensus        77 g~~~~~~~~   85 (106)
                      ....+....
T Consensus        96 ES~aI~~YL  104 (260)
T 2yv7_A           96 ENEKIERHI  104 (260)
T ss_dssp             SHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            777666644

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=97.93  E-value=1.7e-05  Score=52.54  Aligned_cols=55  Identities=16%  Similarity=0.231  Sum_probs=35.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeE
Q 042938           13 VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRL   74 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~   74 (106)
                      ++.|+.+|||+|.+....+.+.    +  +.+-.+|++..+   +   ....++ ..++|++++  +|+.
T Consensus       118 lv~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~---~---l~~~~~-v~~~Pt~~~~~~G~~  180 (210)
T 3apq_A          118 FVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDR---M---LCRMKG-VNSYPSLFIFRSGMA  180 (210)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCH---H---HHHHTT-CCSSSEEEEECTTSC
T ss_pred             EEEEeCCCChhHHHHHHHHHHHHHHhcCceEEEEEECCccH---H---HHHHcC-CCcCCeEEEEECCCc
Confidence            5679999999999998888653    2  334445554432   2   333334 488999865  7754

>4hz4_A Glutathione-S-transferase; enzyme function initiative; 1.62A {Actinobacillus pleuropneumoniae}

Probab=97.93  E-value=4.9e-05  Score=50.12  Aligned_cols=71  Identities=13%  Similarity=0.169  Sum_probs=54.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC---chHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN---GPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~---~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ..+++|+.+.+ +|.+++-+|...|++|+.+.++....   ...   .+...+...++|++..||..+.....+....
T Consensus         2 ~~~~Ly~~~~~-~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~---~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   75 (217)
T 4hz4_A            2 VMITLHYLKQS-CSHRIVWLLEALGLDYELKIYDRLEGTGFAPE---ELKAQHPLGKAPVLQDGDLVLAEGNAIIQHL   75 (217)
T ss_dssp             -CEEEEEESSS-TTHHHHHHHHHHTCCCEEEEECCCTTTCCCCH---HHHTTSTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             ceEEEeecCCC-cHHHHHHHHHHcCCCceEEEEecCcccccCCH---HHHhcCCCCCCCEEEECCEeeecHHHHHHHH
Confidence            35789988865 69999999999999999998876532   122   3345566689999999999998887776543

>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET: GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5 PDB: 2wrt_A 1fhe_A*

Probab=97.93  E-value=3.8e-05  Score=50.69  Aligned_cols=71  Identities=11%  Similarity=0.072  Sum_probs=52.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHH--HhC-CCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQ--QLG-CQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~--~~~-~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++++|+-+.||+|.+++-+|...|++|+.+.++.. ...+  ....  ..+ ...++|++..||..+.....+....
T Consensus         1 ~~~L~y~~~~~~~~~v~~~L~~~gi~ye~~~v~~~-~~~~--~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~YL   74 (216)
T 2fhe_A            1 PAKLGYWKIRGLQQPVRLLLEYLGEKYEEQIYERD-DGEK--WFSKKFELGLDLPNLPYYIDDKCKLTQSLAILRYI   74 (216)
T ss_dssp             CEEEEEESSSTTTHHHHHHHHHTTCCEEEEEECTT-CHHH--HHHHTTTSCCSSCCSSEEECSSCEEESHHHHHHHH
T ss_pred             CcEEEEcCCCchhHHHHHHHHHcCCCceEEeeCCC-chhh--hhccccccCCCCCCCCEEEECCEEEEeHHHHHHHH
Confidence            46788889999999999999999999999988864 2222  1111  123 4568999998888888887766543

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.92  E-value=1.2e-05  Score=49.11  Aligned_cols=51  Identities=10%  Similarity=0.161  Sum_probs=33.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc--------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF--------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~--------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++.|+.+|||+|++....|.+.        ++.+..+|++..+....      + .+...+|++++
T Consensus        29 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~------~-~~v~~~Pt~~~   87 (133)
T 2dj3_A           29 LIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDITND------Q-YKVEGFPTIYF   87 (133)
T ss_dssp             EEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCS------S-CCCSSSSEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHh------h-cCCCcCCEEEE
Confidence            5669999999999998888653        23444455555443221      2 23478999855

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=97.90  E-value=1.2e-05  Score=51.63  Aligned_cols=58  Identities=16%  Similarity=0.319  Sum_probs=39.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhh------cCCCceEEEcccCCC-chHHHHHHHHhCCCCCccEEE-E--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICG------FGANPTVYELDQIPN-GPQIERALQQLGCQPTVPAVF-I--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~------~~v~~~~v~vd~~~~-~~~~~~~l~~~~~~~tvP~if-v--~g~~i   75 (106)
                      ++.|+.+|||+|+.....|.+      .++.+..++++..++ ...   .+ ... ..++|+++ +  +|+.+
T Consensus        50 lv~F~a~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~---~~-~~~-~~~~Pt~~~~d~~G~~~  117 (164)
T 1sen_A           50 MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDE---DF-SPD-GGYIPRILFLDPSGKVH  117 (164)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSCSCG---GG-CTT-CSCSSEEEEECTTSCBC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchHHHH---Hh-ccc-CCcCCeEEEECCCCCEE
Confidence            466899999999999998876      357888899887654 221   11 111 15689873 4  57643

>4ecj_A Glutathione S-transferase; transferase-like protein, transcription regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa} PDB: 4eci_A*

Probab=97.90  E-value=4.3e-05  Score=51.60  Aligned_cols=73  Identities=8%  Similarity=0.044  Sum_probs=53.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-C--eEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-Q--RLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g--~~iGg~~~~~~~~   85 (106)
                      ..+++|+.+ ||+|.+++-+|...|++|+.+.|+....... .+.+...+...+||++..+ |  ..+.+...+....
T Consensus         2 ~m~~Ly~~~-sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~-~~~~~~~nP~g~vPvL~~~dg~~~~l~eS~aI~~YL   77 (244)
T 4ecj_A            2 VMIDLYTAA-TPNGHKVSIALEEMGLPYRVHALSFDKKEQK-APEFLRINPNGRIPAIVDRDNDDFAVFESGAILIYL   77 (244)
T ss_dssp             CCEEEEECS-SHHHHHHHHHHHHHTCCEEEEECCGGGTGGG-SHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHHH
T ss_pred             cEEEEecCC-CcCHHHHHHHHHHcCCCceEEEecCCCCCcC-CHHHHhcCCCCCCCEEEECCCCeEEEecHHHHHHHH
Confidence            357899887 9999999999999999999998876432111 1234455666899999986 4  4777777666543

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.89  E-value=4.4e-05  Score=48.53  Aligned_cols=31  Identities=16%  Similarity=0.367  Sum_probs=24.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcC-CCceEEE
Q 042938           12 PVVIFSKSECCICFSIQTLICGFG-ANPTVYE   42 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~-v~~~~v~   42 (106)
                      .|++|+-+.||||+++...|.+++ +++.++.
T Consensus        17 ~vv~f~D~~Cp~C~~~~~~l~~l~~v~v~~~~   48 (147)
T 3gv1_A           17 KVAVFSDPDCPFCKRLEHEFEKMTDVTVYSFM   48 (147)
T ss_dssp             EEEEEECTTCHHHHHHHHHHTTCCSEEEEEEE
T ss_pred             EEEEEECCCChhHHHHHHHHhhcCceEEEEEE
Confidence            378899999999999999998875 3344433

>1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A*

Probab=97.88  E-value=0.00012  Score=48.46  Aligned_cols=71  Identities=14%  Similarity=0.094  Sum_probs=53.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC---chHHHHHHHHh---C-CCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN---GPQIERALQQL---G-CQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~---~~~~~~~l~~~---~-~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +++|+-+.||+|.+++-+|...|++|+.+.++....   ...  +.+...   + ...++|++..||..+.....+....
T Consensus         2 ~~L~~~~~~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~--~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~yL   79 (219)
T 1gsu_A            2 VTLGYWDIRGLAHAIRLLLEYTETPYQERRYKAGPAPDFDPS--DWTNEKEKLGLDFPNLPYLIDGDVKLTQSNAILRYI   79 (219)
T ss_dssp             EEEEEESSSGGGHHHHHHHHHTTCCEEEEEECCCSTTSCCTH--HHHTTGGGSCCSSCCSSEEEETTEEEESHHHHHHHH
T ss_pred             cEEEEeCCCchhHHHHHHHHHcCCCceEEEeccCcccccchh--hHhhhcccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            578898999999999999999999999988876431   111  233222   2 4568999998998888887776644

>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5 PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A* 2cai_A* 1u3i_A*

Probab=97.88  E-value=4.6e-05  Score=49.90  Aligned_cols=70  Identities=13%  Similarity=0.029  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeE-----eecchHHHhH
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRL-----VGGPNQVMSL   84 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~-----iGg~~~~~~~   84 (106)
                      +..+++|+.+.||+|.+++-+|...|++|+.+.++.. +..    .+...+...++|++..+|..     +.+...+...
T Consensus         3 m~~~~Ly~~~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~----~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~~y   77 (211)
T 1oe8_A            3 GDHIKVIYFNGRGRAESIRMTLVAAGVNYEDERISFQ-DWP----KIKPTIPGGRLPAVKITDNHGHVKWMVESLAIARY   77 (211)
T ss_dssp             -CEEEEEESCTTSTTHHHHHHHHHTTCCCEEEECCTT-THH----HHGGGSTTSCSCEEEEECTTCCEEEEESHHHHHHH
T ss_pred             CCceEEEEeCCCChHHHHHHHHHHcCCCceEEEechH-hHH----HhcccCCCCCCCEEEECCccccceeeccHHHHHHH
Confidence            3468999999999999999999999999999988763 222    23334556799999887643     6666665553

>2yv9_A Chloride intracellular channel EXC-4; chloride ION channel, CLIC, GST fold, metal transport; 1.60A {Caenorhabditis elegans}

Probab=97.87  E-value=3.6e-05  Score=53.66  Aligned_cols=72  Identities=7%  Similarity=-0.032  Sum_probs=53.9

Q ss_pred             hCCCEEEEEcC---------CCchHHHHHHHH----hhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCe
Q 042938            9 NEKPVVIFSKS---------ECCICFSIQTLI----CGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQR   73 (106)
Q Consensus         9 ~~~~v~vf~~~---------~Cp~C~~~~~~L----~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~   73 (106)
                      ++..+++|+.+         .||+|.+++.+|    ...|++|+.+.|+....     . +.+.+...+||++..  ||.
T Consensus        16 ~~~~i~Ly~~~~~~~~~~~~~cP~~~rv~~~L~lL~e~kgi~ye~~~vd~~~~-----p-fl~~nP~GkVPvL~d~~~g~   89 (291)
T 2yv9_A           16 SKPLLELYVKASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNVNSE-----A-FKKNFLGAQPPIMIEEEKEL   89 (291)
T ss_dssp             GSCEEEEEEEBCSSCTTSBCCCHHHHHHHHHHHHHHHTTSCEEEEEEECTTCH-----H-HHHHHTTCCSCEEEEGGGTE
T ss_pred             CCCCEEEEEecCCCCcCccCcChHHHHHHHHHHHHHHhcCceeEEEEeCCCCh-----h-HHhcCCCCCCCEEEEcCCCe
Confidence            34568999764         499999999988    78899999998886421     1 333455579999998  898


Q ss_pred             EeecchHHHhHHH
Q 042938           74 LVGGPNQVMSLHV   86 (106)
Q Consensus        74 ~iGg~~~~~~~~~   86 (106)
                      .+.....+.....
T Consensus        90 ~l~ES~aI~~YL~  102 (291)
T 2yv9_A           90 TYTDNREIEGRIF  102 (291)
T ss_dssp             EECSHHHHHHHHH
T ss_pred             EEeCHHHHHHHHH
Confidence            8887777666543

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=97.86  E-value=7.4e-05  Score=45.82  Aligned_cols=62  Identities=10%  Similarity=0.302  Sum_probs=36.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhC--------------------CCCCc
Q 042938           13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLG--------------------CQPTV   65 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~--------------------~~~tv   65 (106)
                      ++.|+.+|||+|......|.+.       ++.+-.+++|.  +...+++++...+                    +...+
T Consensus        35 ll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~  112 (148)
T 3hcz_A           35 ILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIER--KDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYDIYAT  112 (148)
T ss_dssp             EEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCS--SSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHCCCSS
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecC--CHHHHHHHHHHcCCCCceEEeccccchhHHHhcCcCCC
Confidence            4568999999998776666443       34444455553  3334444433322                    23678


Q ss_pred             cEEEE---CCeEee
Q 042938           66 PAVFI---GQRLVG   76 (106)
Q Consensus        66 P~ifv---~g~~iG   76 (106)
                      |.+++   +|+.+.
T Consensus       113 P~~~lid~~G~i~~  126 (148)
T 3hcz_A          113 PVLYVLDKNKVIIA  126 (148)
T ss_dssp             CEEEEECTTCBEEE
T ss_pred             CEEEEECCCCcEEE
Confidence            99765   676554

>1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal fibrinogen gamma...; gamma chain integrin fragment; HET: GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1 c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A* 1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A* 3cru_A* 3d0z_A*

Probab=97.85  E-value=4.8e-05  Score=51.01  Aligned_cols=71  Identities=10%  Similarity=0.029  Sum_probs=52.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHH--hC-CCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQ--LG-CQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~--~~-~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++++|+-+.||+|.+++-+|...|++|+.+.++.. ...+  .....  .+ ...++|++..||..|.....+....
T Consensus         1 ~~~L~y~~~s~~~~~vr~~L~~~gi~ye~~~v~~~-~~~~--~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~YL   74 (234)
T 1dug_A            1 SPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERD-EGDK--WRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYI   74 (234)
T ss_dssp             CCEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTT-CHHH--HHHHTTSSCCSSCCSSEEECSSCEEESHHHHHHHH
T ss_pred             CcEEEEcCCCCchHHHHHHHHHcCCCceEEEeCCC-chhh--HhhhccccCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            45788889999999999999999999999988764 2122  11111  23 4568999998888888877766543

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=97.85  E-value=1.9e-05  Score=52.35  Aligned_cols=55  Identities=16%  Similarity=0.384  Sum_probs=36.2

Q ss_pred             EEEEEcC-CCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CC
Q 042938           13 VVIFSKS-ECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQ   72 (106)
Q Consensus        13 v~vf~~~-~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g   72 (106)
                      ++.|+.+ |||+|++++..|++.     ++.+..+|++.. +..   +...+++. .++|++++  +|
T Consensus        26 lv~f~~~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~~-~~~---~~~~~~~v-~~~Pt~~~~~~g   88 (226)
T 1a8l_A           26 LIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTP-EGK---ELAKRYRI-DRAPATTITQDG   88 (226)
T ss_dssp             EEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSH-HHH---HHHHHTTC-CSSSEEEEEETT
T ss_pred             EEEEecCCCCchhHHHHHHHHHHHhhCCceEEEEEeCCCc-ccH---HHHHHcCC-CcCceEEEEcCC
Confidence            4678999 999999999999774     244455555531 012   23444454 79999876  66

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=97.84  E-value=4.8e-05  Score=47.30  Aligned_cols=35  Identities=20%  Similarity=0.244  Sum_probs=25.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----CCCceEEEcccCC
Q 042938           13 VVIFSKSECCICFSIQTLICGF----GANPTVYELDQIP   47 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~   47 (106)
                      ++.|+.+|||+|......|.+.    ++.+-.+++|...
T Consensus        34 ll~f~~~~C~~C~~~~~~l~~l~~~~~v~~v~v~~d~~~   72 (154)
T 3ia1_A           34 VIVFWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRD   72 (154)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHCCCEEEEECCTTC
T ss_pred             EEEEEcccChhHHHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence            5678999999999877666443    6777777775333

>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A {Xylella fastidiosa}

Probab=97.83  E-value=0.00018  Score=46.90  Aligned_cols=70  Identities=13%  Similarity=0.152  Sum_probs=53.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .+++|+.+. ++|.+++-+|...|++|+.+.++.......   .+...+...++|++..||..+.+...+....
T Consensus         2 ~~~Ly~~~~-s~~~~v~~~L~~~gi~~e~~~v~~~~~~~~---~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   71 (207)
T 2x64_A            2 HMKLYIMPG-ACSLADHILLRWSGSSFDLQFLDHQSMKAP---EYLALNPSGAVPALQVGDWVLTQNAAILNYI   71 (207)
T ss_dssp             CEEEEECTT-STTHHHHHHHHHHTCCEEEEECCTTTTSSH---HHHTTCTTCCSCEEEETTEEECCHHHHHHHH
T ss_pred             eEEEEcCCC-CcHHHHHHHHHHcCCCcceEEecccccCCh---hHHhcCCCCcCCeEeECCEEEeeHHHHHHHH
Confidence            578898875 569999999999999999998886531112   3334566679999999999888887776644

>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}

Probab=97.82  E-value=6.8e-05  Score=49.62  Aligned_cols=72  Identities=8%  Similarity=-0.032  Sum_probs=54.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-----C-Cch----HHHHHHHHhCCCCCccEEEECCeEeecchHHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQI-----P-NGP----QIERALQQLGCQPTVPAVFIGQRLVGGPNQVM   82 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-----~-~~~----~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~   82 (106)
                      +++|+.+.| +|.+++-+|...|++|+.+.++..     . ..+    ...+.+.+.+...++|++..||..+.....+.
T Consensus         3 ~~Ly~~~~s-~~~~v~~~L~~~gi~ye~~~v~~~~~~~d~~~~e~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~   81 (225)
T 3lsz_A            3 LKIYGVYRS-RASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEEEGLILTESLAIT   81 (225)
T ss_dssp             CEEESCSSS-TTHHHHHHHHHHTCCCEEECCBCGGGSSCTTSTTCCSBTTCHHHHTTCTTCCSCEEEETTEEEESHHHHH
T ss_pred             EEEEeCCCC-chHHHHHHHHHcCCCcEEEEeecccccccccccccccccCCHHHHhhCcCCCCCeEEECCEEEEcHHHHH
Confidence            689999999 999999999999999999888642     0 000    01123445566689999999999998887776


Q ss_pred             hHH
Q 042938           83 SLH   85 (106)
Q Consensus        83 ~~~   85 (106)
                      ...
T Consensus        82 ~yL   84 (225)
T 3lsz_A           82 LHI   84 (225)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.82  E-value=9.6e-05  Score=47.32  Aligned_cols=33  Identities=15%  Similarity=0.256  Sum_probs=23.4

Q ss_pred             CEEEEEcCCCchHHHHHH----HHhhc----CCCceEEEcc
Q 042938           12 PVVIFSKSECCICFSIQT----LICGF----GANPTVYELD   44 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~----~L~~~----~v~~~~v~vd   44 (106)
                      .|++|+..+||||.+...    +++++    .+.+..+.+.
T Consensus        30 ~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~   70 (175)
T 1z6m_A           30 KMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   70 (175)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCC
Confidence            377899999999998874    55554    3566665553

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=97.82  E-value=0.00014  Score=44.74  Aligned_cols=21  Identities=10%  Similarity=0.355  Sum_probs=16.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|.+....|.+
T Consensus        35 ll~F~a~wC~~C~~~~~~l~~   55 (142)
T 3eur_A           35 LLFINNPGCHACAEMIEGLKA   55 (142)
T ss_dssp             EEEECCSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHhh
Confidence            456899999999887766655

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.79  E-value=8.6e-05  Score=48.39  Aligned_cols=32  Identities=16%  Similarity=0.297  Sum_probs=23.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcc
Q 042938           13 VVIFSKSECCICFSIQTLICGF------GANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd   44 (106)
                      |+.|+.++||+|.+....|.++      ++.+..++++
T Consensus        29 vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           29 VLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             EEEEECCCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            7789999999999988777554      2445556665

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=97.78  E-value=2.1e-05  Score=48.00  Aligned_cols=56  Identities=18%  Similarity=0.339  Sum_probs=38.4

Q ss_pred             EEEEEcCCCc--------------hHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--
Q 042938           13 VVIFSKSECC--------------ICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--   70 (106)
Q Consensus        13 v~vf~~~~Cp--------------~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--   70 (106)
                      ++.|+.+|||              +|+++...+.+..      +.+..+|+|.+++..      .+++ ..++|++++  
T Consensus        25 lv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~------~~~~-v~~~Pt~~~~~   97 (123)
T 1oaz_A           25 LVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA------PKYG-IRGIPTLLLFK   97 (123)
T ss_dssp             EEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTG------GGGT-CCBSSEEEEEE
T ss_pred             EEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHH------HHcC-CCccCEEEEEE
Confidence            5669999999              9999999887753      334456666654422      2234 478999866  


Q ss_pred             CCeEe
Q 042938           71 GQRLV   75 (106)
Q Consensus        71 ~g~~i   75 (106)
                      +|+.+
T Consensus        98 ~G~~~  102 (123)
T 1oaz_A           98 NGEVA  102 (123)
T ss_dssp             SSSEE
T ss_pred             CCEEE
Confidence            88654

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=97.76  E-value=0.00014  Score=44.49  Aligned_cols=66  Identities=12%  Similarity=0.084  Sum_probs=38.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhh----c-CC-CceEEEcccCCCchHHHH---------------------HHHHhCCCCCc
Q 042938           13 VVIFSKSECCICFSIQTLICG----F-GA-NPTVYELDQIPNGPQIER---------------------ALQQLGCQPTV   65 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~----~-~v-~~~~v~vd~~~~~~~~~~---------------------~l~~~~~~~tv   65 (106)
                      ++.|+.+|||+|......|.+    + +- .+..+-|+.+.+...+++                     ....++ ...+
T Consensus        37 ll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-v~~~  115 (148)
T 3fkf_A           37 LLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA-ILTL  115 (148)
T ss_dssp             EEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT-CCSS
T ss_pred             EEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC-CCCc
Confidence            566899999999988766644    3 22 244444444333322222                     223334 4789


Q ss_pred             cEEEE---CCeEeecch
Q 042938           66 PAVFI---GQRLVGGPN   79 (106)
Q Consensus        66 P~ifv---~g~~iGg~~   79 (106)
                      |.+++   +|+.++...
T Consensus       116 P~~~lid~~G~i~~~~~  132 (148)
T 3fkf_A          116 PTNILLSPTGKILARDI  132 (148)
T ss_dssp             SEEEEECTTSBEEEESC
T ss_pred             CEEEEECCCCeEEEecC
Confidence            99654   677776554

>2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET: GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A*

Probab=97.76  E-value=5.6e-05  Score=49.22  Aligned_cols=73  Identities=8%  Similarity=0.068  Sum_probs=52.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-ECCeEeecchHHHhHHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IGQRLVGGPNQVMSLHV   86 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~~~~~~~~~   86 (106)
                      +++|+.+.|| |.+++-+|...|++|+.+.++.........+.+.+.+...++|++. .||..+.....+.....
T Consensus         1 ~~Ly~~~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~   74 (201)
T 2pvq_A            1 MKLYYKVGAA-SLAPHIILSEAGLPYELEAVDLKAKKTADGGDYFAVNPRGAVPALEVKPGTVITQNAAILQYIG   74 (201)
T ss_dssp             CEEEECTTST-THHHHHHHHHHTCCCEEEECBTTTTBCTTSCBGGGTCTTCCSCEEEEETTEEEESHHHHHHHHH
T ss_pred             CeeeeCCCcc-HHHHHHHHHhcCCCceEEEecccccCCCCCHHHHhhCcCCCCCEEEeCCCCEEehHHHHHHHHH
Confidence            3689999997 9999999999999999998875432100001122345567999998 68888888877766543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=97.74  E-value=5e-05  Score=50.57  Aligned_cols=66  Identities=12%  Similarity=0.100  Sum_probs=40.3

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-------C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE--E
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF-------G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF--I   70 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-------~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if--v   70 (106)
                      +.+++...+  ++.|+.+||++|+.....+.+.       +  +.+-.+|++..+   +   ...+++ ..++|+++  -
T Consensus       140 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~---~---l~~~~~-v~~~Pt~~~~~  212 (241)
T 3idv_A          140 FDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAET---D---LAKRFD-VSGYPTLKIFR  212 (241)
T ss_dssp             HHHHHHHCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCH---H---HHHHTT-CCSSSEEEEEE
T ss_pred             HHHhhccCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCH---H---HHHHcC-CcccCEEEEEE
Confidence            344554444  5569999999998766555432       2  556666666432   2   333334 47899874  4


Q ss_pred             CCeEee
Q 042938           71 GQRLVG   76 (106)
Q Consensus        71 ~g~~iG   76 (106)
                      +|+.+.
T Consensus       213 ~g~~~~  218 (241)
T 3idv_A          213 KGRPYD  218 (241)
T ss_dssp             TTEEEE
T ss_pred             CCeEEE
Confidence            887654

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=97.72  E-value=5.5e-05  Score=51.46  Aligned_cols=31  Identities=13%  Similarity=0.106  Sum_probs=23.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhh----cCCCceEEEc
Q 042938           13 VVIFSKSECCICFSIQTLICG----FGANPTVYEL   43 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~v   43 (106)
                      |++|+.++||||++....+.+    -++++.++.+
T Consensus       101 v~~F~D~~Cp~C~~~~~~l~~~~~~g~v~v~~~~~  135 (241)
T 1v58_A          101 VYVFADPFCPYCKQFWQQARPWVDSGKVQLRTLLV  135 (241)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             EEEEECCCChhHHHHHHHHHHHHhCCcEEEEEEEC
Confidence            788999999999998665543    2466666665

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.72  E-value=0.00017  Score=46.85  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=19.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhc
Q 042938           12 PVVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      .|+.|+.++||+|.+....|.++
T Consensus        28 ~i~~f~d~~Cp~C~~~~~~l~~l   50 (192)
T 3h93_A           28 EVVELFWYGCPHCYAFEPTIVPW   50 (192)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCChhHHHhhHHHHHH
Confidence            37889999999999888777543

>1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 PDB: 1a0f_A*

Probab=97.72  E-value=4.6e-05  Score=49.60  Aligned_cols=72  Identities=15%  Similarity=0.237  Sum_probs=51.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~   85 (106)
                      +.+|+.+.|+ |.+++-+|...|++|+.+.++.........+.+.+.+...++|++.+ ||..+.....+....
T Consensus         1 ~~Ly~~~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   73 (201)
T 1n2a_A            1 MKLFYKPGAC-SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYL   73 (201)
T ss_dssp             CEEEECTTST-THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             CeeecCCCcc-hHHHHHHHHHcCCCCeeEEEeCCCccccCCHHHHhhCcCCCCCeEEecCCcEEecHHHHHHHH
Confidence            3688989996 99999999999999998888754221000012223455679999986 778888877776654

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=97.71  E-value=0.00037  Score=43.06  Aligned_cols=33  Identities=12%  Similarity=0.176  Sum_probs=22.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEccc
Q 042938           13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQ   45 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~   45 (106)
                      ++.|+.+|||+|.+....|.+.       ++.+..++++.
T Consensus        30 lv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~   69 (151)
T 2f9s_A           30 FLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGE   69 (151)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCC
Confidence            5668999999999777666443       45555555554

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=97.65  E-value=0.00015  Score=44.81  Aligned_cols=64  Identities=9%  Similarity=0.107  Sum_probs=35.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhh----cCC-CceEEEcccCCCchHHHHH------------------HHHhCCCCCccEEE
Q 042938           13 VVIFSKSECCICFSIQTLICG----FGA-NPTVYELDQIPNGPQIERA------------------LQQLGCQPTVPAVF   69 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~----~~v-~~~~v~vd~~~~~~~~~~~------------------l~~~~~~~tvP~if   69 (106)
                      ++.|+.+|||+|.+....|.+    ++- .+..+-|+.++....+.++                  +.+..+...+|+++
T Consensus        34 lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~  113 (152)
T 2lja_A           34 YIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFI  113 (152)
T ss_dssp             EEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEE
T ss_pred             EEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEEE
Confidence            566899999999876655543    321 2444444433333222222                  22223347889876


Q ss_pred             E---CCeEee
Q 042938           70 I---GQRLVG   76 (106)
Q Consensus        70 v---~g~~iG   76 (106)
                      +   +|+.+.
T Consensus       114 lid~~G~i~~  123 (152)
T 2lja_A          114 LLDRDGKIIS  123 (152)
T ss_dssp             EECTTSCEEE
T ss_pred             EECCCCeEEE
Confidence            5   677665

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=97.65  E-value=4.9e-05  Score=47.68  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=17.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+|||+|......|.++
T Consensus        42 lv~F~a~~C~~C~~~~~~l~~l   63 (164)
T 2h30_A           42 LIKFWASWCPLCLSELGQAEKW   63 (164)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHH
Confidence            5678999999999887776543

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=97.63  E-value=0.00044  Score=43.56  Aligned_cols=33  Identities=9%  Similarity=0.155  Sum_probs=24.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc---CCCceEEEccc
Q 042938           13 VVIFSKSECCICFSIQTLICGF---GANPTVYELDQ   45 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~---~v~~~~v~vd~   45 (106)
                      ++.|+.+|||+|.+....|.++   ++.+-.++++.
T Consensus        55 ll~F~a~~C~~C~~~~~~l~~l~~~~v~vv~v~~~~   90 (168)
T 2b1k_A           55 LLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKD   90 (168)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence            5668999999999887766443   66666666543

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.63  E-value=0.00032  Score=45.35  Aligned_cols=22  Identities=18%  Similarity=0.246  Sum_probs=17.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHhh
Q 042938           12 PVVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      .|++|+..+||+|......|.+
T Consensus        28 ~i~~f~d~~Cp~C~~~~~~l~~   49 (193)
T 2rem_A           28 EVVEIFGYTCPHCAHFDSKLQA   49 (193)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEEECCCChhHhhhhHHHHH
Confidence            4788999999999977666543

>3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A {Methylococcus capsulatus} PDB: 3uap_A*

Probab=97.63  E-value=0.00012  Score=48.81  Aligned_cols=69  Identities=10%  Similarity=0.168  Sum_probs=52.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCc----hHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNG----PQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~----~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~   85 (106)
                      .+++|+.+.++ |.+++-+|...|++|+.+.++.....    ++   + ...+...++|++.. ||..+.....+....
T Consensus         2 ~~~Ly~~~~s~-~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~---~-~~~nP~g~vP~L~~~dg~~l~eS~aI~~YL   75 (227)
T 3uar_A            2 VMKLYYFPGAC-SLAPHIVLREAGLDFELENVDLGTKKTGSGAD---F-LQVNPKGYVPALQLDDGQVLTEDQVILQYL   75 (227)
T ss_dssp             CEEEEECTTST-THHHHHHHHHHTCCEEEEEEETTTTEETTCCB---H-HHHCTTCCSCEEECTTCCEEECHHHHHHHH
T ss_pred             eEEEecCCCcc-hHHHHHHHHHcCCCceEEEeccCcCcccCCHH---H-HHhCCCCCCCeEEECCCCEEecHHHHHHHH
Confidence            37889988864 99999999999999999888765422    22   2 33466689999998 577888877776543

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=97.63  E-value=0.00024  Score=43.40  Aligned_cols=64  Identities=14%  Similarity=0.227  Sum_probs=37.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhh----------cCCCceEEEcccCCCchHHHHHHHH-------------------hCCCC
Q 042938           13 VVIFSKSECCICFSIQTLICG----------FGANPTVYELDQIPNGPQIERALQQ-------------------LGCQP   63 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~----------~~v~~~~v~vd~~~~~~~~~~~l~~-------------------~~~~~   63 (106)
                      ++.|+.+|||+|.+....|.+          .++.+-.+++|.  +...+++++..                   ..+..
T Consensus        31 ll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~  108 (142)
T 3ewl_A           31 MLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDE--NREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIR  108 (142)
T ss_dssp             EEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSS--CHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSCCC
T ss_pred             EEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecC--CHHHHHHHHHHcCCCcceeeCCccchhhHHHcCCC
Confidence            455899999999986544433          344454555553  33334444332                   22347


Q ss_pred             CccEEE-E--CCeEeecc
Q 042938           64 TVPAVF-I--GQRLVGGP   78 (106)
Q Consensus        64 tvP~if-v--~g~~iGg~   78 (106)
                      .+|.+| +  +|+.+.+.
T Consensus       109 ~~P~~~lid~~G~i~~~~  126 (142)
T 3ewl_A          109 ATPTIYLLDGRKRVILKD  126 (142)
T ss_dssp             SSSEEEEECTTCBEEECS
T ss_pred             CCCeEEEECCCCCEEecC
Confidence            889865 4  57777643

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.62  E-value=0.00034  Score=43.21  Aligned_cols=21  Identities=24%  Similarity=0.270  Sum_probs=16.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|.+....|.+
T Consensus        32 lv~f~~~~C~~C~~~~~~l~~   52 (153)
T 2l5o_A           32 LINFWFPSCPGCVSEMPKIIK   52 (153)
T ss_dssp             EEEEECTTCTTHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            567889999999987766644

>1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating, A putative oxidoreduct; HET: GSH; 2.50A {Proteus mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A*

Probab=97.62  E-value=7.3e-05  Score=48.71  Aligned_cols=73  Identities=8%  Similarity=0.173  Sum_probs=51.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-ECCeEeecchHHHhHHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IGQRLVGGPNQVMSLHV   86 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~~~~~~~~~   86 (106)
                      +++|+.+.|| |.+++-+|...|++|+.+.++.......-.+.+...+...++|++. .||..+.....+.....
T Consensus         1 ~~Ly~~~~s~-~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~   74 (203)
T 1pmt_A            1 MKLYYTPGSC-SLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLA   74 (203)
T ss_dssp             CEEEECTTST-THHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHH
T ss_pred             CeeeccCCcc-hHHHHHHHHHcCCCceEEEeccccccccCCHHHHhcCCCCCCCeEEecCCcEEeeHHHHHHHHH
Confidence            3688999996 9999999999999999888875432100001122345567999998 67888888877766543

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=97.61  E-value=0.00045  Score=44.77  Aligned_cols=32  Identities=16%  Similarity=0.181  Sum_probs=20.7

Q ss_pred             CEEEEEcCCCchHHHH----HHHHhhcCCC--ceEEEc
Q 042938           12 PVVIFSKSECCICFSI----QTLICGFGAN--PTVYEL   43 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~----~~~L~~~~v~--~~~v~v   43 (106)
                      .|++|+.++||+|.+.    .++.++.+..  +..+.+
T Consensus        25 ~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   62 (195)
T 2znm_A           25 EVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHV   62 (195)
T ss_dssp             EEEEEECTTSCCTTSSCHHHHHHHHHSCTTEEEEEEEC
T ss_pred             EEEEEECCCChhHHHHhHHHHHHHHHCCCceEEEEecc
Confidence            3788999999999754    4444555443  444444

>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17

Probab=97.61  E-value=0.0003  Score=42.22  Aligned_cols=76  Identities=13%  Similarity=0.238  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCC-CchHH------HHHHHHhh--------cCCCceEEEcccCCCc--hHHHHHHHHh-CCCCCccEEEEC
Q 042938           10 EKPVVIFSKSE-CCICF------SIQTLICG--------FGANPTVYELDQIPNG--PQIERALQQL-GCQPTVPAVFIG   71 (106)
Q Consensus        10 ~~~v~vf~~~~-Cp~C~------~~~~~L~~--------~~v~~~~v~vd~~~~~--~~~~~~l~~~-~~~~tvP~ifv~   71 (106)
                      +-.|+||+..- |+.|.      ..-.+|+.        ..+.|+++||...++.  ..-+++..+. .-..-.|.|.+|
T Consensus         7 ~v~i~VYGAe~iCASCVnaPSSkeTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYPlV~in   86 (111)
T 1xg8_A            7 SNAVVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITMN   86 (111)
T ss_dssp             CEEEEEEECSSCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEEET
T ss_pred             EEEEEEEcccccchhccCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhccccceEEEEC
Confidence            44689999865 88885      44555543        2456788999776554  4334444444 333567999999


Q ss_pred             CeEee-cchHHHhHH
Q 042938           72 QRLVG-GPNQVMSLH   85 (106)
Q Consensus        72 g~~iG-g~~~~~~~~   85 (106)
                      |+.|| |+-.++..+
T Consensus        87 deiVaEGnp~LK~I~  101 (111)
T 1xg8_A           87 DEYVADGYIQTKQIT  101 (111)
T ss_dssp             TEEEEESSCCHHHHH
T ss_pred             CEEeecCCccHHHHH
Confidence            99998 555555544

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=97.60  E-value=0.00024  Score=43.59  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=17.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|......|.+
T Consensus        32 ll~F~a~wC~~C~~~~~~l~~   52 (144)
T 1o73_A           32 FLYFSASWCPPCRGFTPVLAE   52 (144)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEECcCCHHHHHHHHHHHH
Confidence            566899999999988777654

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=97.59  E-value=0.00017  Score=48.62  Aligned_cols=52  Identities=17%  Similarity=0.257  Sum_probs=33.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc---------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF---------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~---------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      ++.|+.+|||+|++....+.+.         ++.+..+|++.+.. .   +...+++ ..++|+++
T Consensus        34 lv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~-~---~l~~~~~-v~~~Pt~~   94 (244)
T 3q6o_A           34 AVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN-S---AVCRDFN-IPGFPTVR   94 (244)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTT-H---HHHHHTT-CCSSSEEE
T ss_pred             EEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhh-H---HHHHHcC-CCccCEEE
Confidence            5669999999999998887553         23344455543332 2   2333344 48899974

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=97.59  E-value=0.00028  Score=44.10  Aligned_cols=21  Identities=5%  Similarity=0.047  Sum_probs=16.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|......|.+
T Consensus        39 ll~F~a~wC~~C~~~~~~l~~   59 (152)
T 2lrt_A           39 LIDFTVYNNAMSAAHNLALRE   59 (152)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEEcCCChhhHHHHHHHHH
Confidence            566889999999976655543

>2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia xenovorans} PDB: 2gdr_A*

Probab=97.59  E-value=8e-05  Score=48.53  Aligned_cols=72  Identities=11%  Similarity=0.179  Sum_probs=50.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~   85 (106)
                      +++|+.+.|| |.+++-+|...|++|+.+.++.......-.+.+.+.+...++|++.+ ||..+.....+....
T Consensus         1 ~~Ly~~~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL   73 (203)
T 2dsa_A            1 MKLYYSPGAC-SLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYV   73 (203)
T ss_dssp             CEEEECTTST-THHHHHHHHHHTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             CeeeecCCcc-hHHHHHHHHHcCCCCeEEEEeCCCCcccCCHHHHHhCCCCCCCEEEecCCcEEecHHHHHHHH
Confidence            3688888886 99999999999999999888754221000011223455679999986 778888877766643

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=97.59  E-value=0.0006  Score=43.61  Aligned_cols=46  Identities=9%  Similarity=-0.003  Sum_probs=27.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-------CC------CceEEEcccCCCchHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGF-------GA------NPTVYELDQIPNGPQIERALQQL   59 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-------~v------~~~~v~vd~~~~~~~~~~~l~~~   59 (106)
                      ++.|+.+|||+|......|.++       ++      .+-.+++|.. +...+++++..+
T Consensus        63 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~-~~~~~~~~~~~~  121 (183)
T 3lwa_A           63 ILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDY-SRDIAQDFVTDN  121 (183)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCC-CHHHHHHHHHHT
T ss_pred             EEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCC-CHHHHHHHHHHc
Confidence            5568999999999776666443       45      4444454431 444566666554

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=97.58  E-value=0.00017  Score=47.14  Aligned_cols=73  Identities=15%  Similarity=0.179  Sum_probs=37.8

Q ss_pred             HHhhhhCC-CE-EEEEcCCCchHHHHHH-HH------hhcCCCceEEEcccC--CCchH-HHHHHHHhCCCCCccEE-EE
Q 042938            4 VTRMVNEK-PV-VIFSKSECCICFSIQT-LI------CGFGANPTVYELDQI--PNGPQ-IERALQQLGCQPTVPAV-FI   70 (106)
Q Consensus         4 ~~~~~~~~-~v-~vf~~~~Cp~C~~~~~-~L------~~~~v~~~~v~vd~~--~~~~~-~~~~l~~~~~~~tvP~i-fv   70 (106)
                      +..+...+ +| +-|+.+||++|+.... .+      +.++-.|..+.||.+  ++... ....++...+..++|++ |+
T Consensus        32 ~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l  111 (173)
T 3ira_A           32 FEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIM  111 (173)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEEE
T ss_pred             HHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceeeE
Confidence            44444444 44 4489999999998654 22      222223444444443  33222 11122222355789986 44


Q ss_pred             --CCeEee
Q 042938           71 --GQRLVG   76 (106)
Q Consensus        71 --~g~~iG   76 (106)
                        +|+.+.
T Consensus       112 ~~dG~~v~  119 (173)
T 3ira_A          112 TPGKKPFF  119 (173)
T ss_dssp             CTTSCEEE
T ss_pred             CCCCCcee
Confidence              577653

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=97.58  E-value=0.00014  Score=47.73  Aligned_cols=63  Identities=11%  Similarity=0.317  Sum_probs=39.2

Q ss_pred             HHhhhhCCC----EEEEEc-------CCCchHHHHHHHHhhcC-----------CCceEEEcccCCCchHHHHHHHHhCC
Q 042938            4 VTRMVNEKP----VVIFSK-------SECCICFSIQTLICGFG-----------ANPTVYELDQIPNGPQIERALQQLGC   61 (106)
Q Consensus         4 ~~~~~~~~~----v~vf~~-------~~Cp~C~~~~~~L~~~~-----------v~~~~v~vd~~~~~~~~~~~l~~~~~   61 (106)
                      +++.+...+    |+.|+.       +||+.|+.+...|++..           +.+-.+|+|..++      ...+++ 
T Consensus        28 F~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~------la~~~~-  100 (178)
T 3ga4_A           28 YPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQ------LVKDLK-  100 (178)
T ss_dssp             HHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHH------HHHHTT-
T ss_pred             HHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHH------HHHHcC-
Confidence            445554322    666787       49999999998886542           3455566665432      333334 


Q ss_pred             CCCccEE--EECCe
Q 042938           62 QPTVPAV--FIGQR   73 (106)
Q Consensus        62 ~~tvP~i--fv~g~   73 (106)
                      ..++|++  |-+|.
T Consensus       101 I~siPtl~~F~~g~  114 (178)
T 3ga4_A          101 LQNVPHLVVYPPAE  114 (178)
T ss_dssp             CCSSCEEEEECCCC
T ss_pred             CCCCCEEEEEcCCC
Confidence            5999997  44663

>3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli}

Probab=97.56  E-value=0.00035  Score=48.38  Aligned_cols=73  Identities=10%  Similarity=0.099  Sum_probs=52.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC----eEeecchH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ----RLVGGPNQ   80 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g----~~iGg~~~   80 (106)
                      .++++|+. .||+|.+++-+|...      |++|+.+.|+...... ..+.+...+...+||++..+|    ..+.....
T Consensus        43 ~~~~Ly~~-~sp~~~rvr~~L~e~~~~g~kgi~ye~~~v~~~~~e~-~~~~~~~~nP~gkVPvL~~~~g~~~~~l~ES~a  120 (288)
T 3c8e_A           43 HPLQLYSL-GTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQ-FSSGFVEVNPNSKIPALRDHTHNPPIRVFESGS  120 (288)
T ss_dssp             SSEEEEEC-SSHHHHHHHHHHHHHHHTTCGGGCEEEEECCGGGTGG-GBHHHHHHCTTCCSCEEEETTSSSCEEEESHHH
T ss_pred             CceEEecC-CCCChHHHHHHHHHhhhcccCCCCcEEEEeccccccc-cCHHHHHhCCCCCCCEEEeCCCCCceEEeCHHH
Confidence            35889986 499999999999998      9999998887532110 001233456668999999875    77777776


Q ss_pred             HHhHH
Q 042938           81 VMSLH   85 (106)
Q Consensus        81 ~~~~~   85 (106)
                      +....
T Consensus       121 I~~YL  125 (288)
T 3c8e_A          121 ILLYL  125 (288)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50}

Probab=97.53  E-value=0.00024  Score=48.14  Aligned_cols=72  Identities=1%  Similarity=-0.159  Sum_probs=55.6

Q ss_pred             CCEEEEEcC-CCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHH--HhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKS-ECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQ--QLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~-~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~--~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ..+++|+.+ .++.|.+++-+|...|++|+.+.|+....  ...++++  ..+.. .||++..||..+.....+....
T Consensus        20 m~~~L~y~~g~~~~a~~vr~~L~~~gi~ye~~~v~~~~~--~~~~~~~~k~~nP~-kVPvL~d~g~~l~ES~AI~~YL   94 (252)
T 3h1n_A           20 MAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGED--MLDDMRRRRDTPPF-APPYLVADGMTIAQTANILLFL   94 (252)
T ss_dssp             GCEEEECCSSSCTTHHHHHHHHHHHTCCEEEGGGSTTCC--HHHHHTSCCSSCCS-SSCEEEETTEEEESHHHHHHHH
T ss_pred             CceEEEeCCCCCcchHHHHHHHHhCCCCceEEeecCchh--hHHHHhhccCCCCC-CCCEEEECCEEeecHHHHHHHH
Confidence            358999999 59999999999999999999998883222  2234543  45666 9999999998888776665543

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=97.51  E-value=9.4e-05  Score=45.57  Aligned_cols=21  Identities=19%  Similarity=0.181  Sum_probs=16.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|.+....|.+
T Consensus        32 ll~F~a~wC~~C~~~~~~l~~   52 (144)
T 1i5g_A           32 FFYFSASWCPPSRAFTPQLID   52 (144)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHH
Confidence            566899999999988776644

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=97.50  E-value=0.00071  Score=47.30  Aligned_cols=66  Identities=11%  Similarity=0.161  Sum_probs=41.0

Q ss_pred             HHHhhhh-CCC--EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--C
Q 042938            3 MVTRMVN-EKP--VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--G   71 (106)
Q Consensus         3 ~~~~~~~-~~~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~   71 (106)
                      .+.+++. ..+  ++.|+.+||++|++....+.+.    +  +.+..+++|.... .   +...+++ ...+|++++  +
T Consensus        26 ~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~-~---~l~~~~~-I~~~Pt~~~~~~  100 (298)
T 3ed3_A           26 SFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKN-K---ALCAKYD-VNGFPTLMVFRP  100 (298)
T ss_dssp             HHHHHHTSSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTT-H---HHHHHTT-CCBSSEEEEEEC
T ss_pred             HHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccC-H---HHHHhCC-CCccceEEEEEC
Confidence            3455563 333  5669999999999998888654    2  3455566664333 2   2333444 488999754  6


Q ss_pred             Ce
Q 042938           72 QR   73 (106)
Q Consensus        72 g~   73 (106)
                      |+
T Consensus       101 g~  102 (298)
T 3ed3_A          101 PK  102 (298)
T ss_dssp             CC
T ss_pred             Cc
Confidence            64

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=97.49  E-value=0.00037  Score=51.56  Aligned_cols=63  Identities=8%  Similarity=0.098  Sum_probs=40.8

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE--ECC
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF--IGQ   72 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if--v~g   72 (106)
                      +.+.+..++  ++.|+.+||++|++....+.+.       ++.+-.+|.+.++      +...+++ ...+|+++  .+|
T Consensus        24 f~~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~------~l~~~~~-v~~~Pt~~~~~~g   96 (504)
T 2b5e_A           24 FNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ------DLCMEHN-IPGFPSLKIFKNS   96 (504)
T ss_dssp             HHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH------HHHHHTT-CCSSSEEEEEETT
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCH------HHHHhcC-CCcCCEEEEEeCC
Confidence            455565554  5679999999999998888653       2445555555432      2333444 48899874  477


Q ss_pred             e
Q 042938           73 R   73 (106)
Q Consensus        73 ~   73 (106)
                      +
T Consensus        97 ~   97 (504)
T 2b5e_A           97 D   97 (504)
T ss_dssp             C
T ss_pred             c
Confidence            6

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=97.49  E-value=0.00054  Score=49.22  Aligned_cols=65  Identities=12%  Similarity=0.138  Sum_probs=39.7

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhcC------------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGFG------------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~------------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      +.+++..++  ++.|+.+||++|++....+.+..            +.+-.+|.+..   .   +...+++ ...+|+++
T Consensus        15 f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~---~---~l~~~~~-v~~~Pt~~   87 (382)
T 2r2j_A           15 IDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQH---S---DIAQRYR-ISKYPTLK   87 (382)
T ss_dssp             HHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTC---H---HHHHHTT-CCEESEEE
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCcc---H---HHHHhcC-CCcCCEEE
Confidence            445555554  45699999999999988775531            33444444433   1   2333334 48899975


Q ss_pred             --ECCeEe
Q 042938           70 --IGQRLV   75 (106)
Q Consensus        70 --v~g~~i   75 (106)
                        .+|+.+
T Consensus        88 ~f~~G~~~   95 (382)
T 2r2j_A           88 LFRNGMMM   95 (382)
T ss_dssp             EEETTEEE
T ss_pred             EEeCCcEe
Confidence              488654

>4gf0_A Glutathione S-transferase; GST, enzyme function initiative, EFI, structural genomics; HET: GSH; 1.75A {Sulfitobacter}

Probab=97.48  E-value=0.00058  Score=44.84  Aligned_cols=72  Identities=8%  Similarity=0.088  Sum_probs=51.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHhH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMSL   84 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~~   84 (106)
                      .-+++|+.++ +.+.+++-+|.+.|++|+.+.||.......- +.+.+.+...+||++.++ |..+.....+...
T Consensus         2 ~m~kLY~~p~-s~s~~vr~~L~e~gl~ye~~~v~~~~~~~~~-~~~l~~nP~g~vP~L~~d~g~~l~ES~aI~~Y   74 (215)
T 4gf0_A            2 VMLTLYFTPG-TISVAVAIAIEEAALPYQPVRVDFATAEQTK-PDYLAINPKGRVPALRLEDDTILTETGALLDY   74 (215)
T ss_dssp             CSEEEEECTT-STHHHHHHHHHHTTCCEEEEECCGGGTGGGS-HHHHTTCTTCCSCEEECTTSCEEECHHHHHHH
T ss_pred             CcEEEEeCCC-CcHHHHHHHHHHhCCCCEEEEECCCCCccCC-HHHHHhCCCCCcceEEecCCcEEechHHHHHH
Confidence            4578898874 6788999999999999999988754321111 233345666799999876 6777776666554

>1f2e_A Glutathione S-transferase; GST complexed with glutathione, thioredoxin superfamily fold transferase; HET: GSH; 2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1 c.47.1.5

Probab=97.48  E-value=0.00053  Score=44.48  Aligned_cols=67  Identities=13%  Similarity=0.129  Sum_probs=50.0

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC----chHHHHHHHHhCCCCCccEEE-ECCeEeecchHHHhHH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPN----GPQIERALQQLGCQPTVPAVF-IGQRLVGGPNQVMSLH   85 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~----~~~~~~~l~~~~~~~tvP~if-v~g~~iGg~~~~~~~~   85 (106)
                      ++|+.+ +|+|.+++-+|...|++|+.+.++....    ..+   ++ ..+...++|++. .||..+.....+....
T Consensus         2 ~Ly~~~-~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~---~~-~~~P~g~vP~L~~~~g~~l~eS~aI~~yL   73 (201)
T 1f2e_A            2 KLFISP-GACSLAPHIALRETGADFEAVKVDLAVRKTEAGED---FL-TVNPSGKVPALTLDSGETLTENPAILLYI   73 (201)
T ss_dssp             EEEECT-TSTTHHHHHHHHHHTCCCEEEEEETTTTEETTSCB---HH-HHCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             eeeecC-CccHHHHHHHHHHcCCCceEEEeecCCCCCCCChH---HH-ccCcCCCCceEEecCCcEeeHHHHHHHHH
Confidence            678876 6899999999999999999988875432    122   22 335567999998 5788888877776644

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=97.48  E-value=0.00058  Score=42.10  Aligned_cols=22  Identities=18%  Similarity=0.151  Sum_probs=16.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+|||+|......|.++
T Consensus        32 ll~f~~~~C~~C~~~~~~l~~l   53 (152)
T 3gl3_A           32 YLDFWASWCGPCRQSFPWMNQM   53 (152)
T ss_dssp             EEEEECTTCTHHHHHHHHHHHH
T ss_pred             EEEEECCcCHHHHHHHHHHHHH
Confidence            4558999999999877666443

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=97.48  E-value=0.00018  Score=44.46  Aligned_cols=21  Identities=19%  Similarity=0.162  Sum_probs=16.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|......|.+
T Consensus        32 ll~F~a~wC~~C~~~~p~l~~   52 (146)
T 1o8x_A           32 FFYFSASWCPPARGFTPQLIE   52 (146)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEEccCCHHHHHHHHHHHH
Confidence            566899999999987766644

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=97.47  E-value=7.6e-05  Score=47.00  Aligned_cols=65  Identities=15%  Similarity=0.200  Sum_probs=29.8

Q ss_pred             HHhhhhCC-C-EEEEEcCC--CchHHHHHHHHhhc-----CCC--ceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--
Q 042938            4 VTRMVNEK-P-VVIFSKSE--CCICFSIQTLICGF-----GAN--PTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--   70 (106)
Q Consensus         4 ~~~~~~~~-~-v~vf~~~~--Cp~C~~~~~~L~~~-----~v~--~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--   70 (106)
                      +.+.+..+ . +++|+.+|  ||.|+.....|.++     ++.  +-.+|+|..+      +...+++ ..++|++++  
T Consensus        27 f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~------~la~~~~-V~~iPT~~~fk   99 (142)
T 2es7_A           27 VDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSE------AIGDRFN-VRRFPATLVFT   99 (142)
T ss_dssp             -------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHHH------HHHHTTT-CCSSSEEEEES
T ss_pred             HHHHHHhCCCEEEEEECCCCCCccHHHHHHHHHHHHHHhcccceeEEEEECCCCH------HHHHhcC-CCcCCeEEEEe
Confidence            34445433 2 55566665  99999888887653     345  4455555422      2323334 589999754  


Q ss_pred             CCeEe
Q 042938           71 GQRLV   75 (106)
Q Consensus        71 ~g~~i   75 (106)
                      +|+.+
T Consensus       100 ~G~~v  104 (142)
T 2es7_A          100 DGKLR  104 (142)
T ss_dssp             CC---
T ss_pred             CCEEE
Confidence            78644

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=97.46  E-value=0.00035  Score=43.49  Aligned_cols=21  Identities=19%  Similarity=0.055  Sum_probs=16.0

Q ss_pred             EEEEEcCCCchHHH-HHHHHhh
Q 042938           13 VVIFSKSECCICFS-IQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~-~~~~L~~   33 (106)
                      ++.|+.+|||+|.. +...|.+
T Consensus        34 lv~F~a~~C~~C~~e~~~~l~~   55 (160)
T 3lor_A           34 VVEVFQMLCPGCVNHGVPQAQK   55 (160)
T ss_dssp             EEEEECTTCHHHHHTHHHHHHH
T ss_pred             EEEEEcCCCcchhhhhhHHHHH
Confidence            45589999999998 5666644

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=97.45  E-value=0.00071  Score=43.35  Aligned_cols=32  Identities=13%  Similarity=0.062  Sum_probs=21.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc---CCCceEEEcc
Q 042938           13 VVIFSKSECCICFSIQTLICGF---GANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~---~v~~~~v~vd   44 (106)
                      ++.|+.+|||+|......|.++   ++.+-.++++
T Consensus        62 ll~F~a~~C~~C~~~~~~l~~l~~~~v~vv~vs~~   96 (176)
T 3kh7_A           62 LVNVWGTWCPSCRVEHPELTRLAEQGVVIYGINYK   96 (176)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred             EEEEECCcCHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5668999999999877666443   5555455543

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=97.44  E-value=0.0011  Score=41.09  Aligned_cols=21  Identities=19%  Similarity=0.058  Sum_probs=16.0

Q ss_pred             EEEEEcCCCchHHH-HHHHHhh
Q 042938           13 VVIFSKSECCICFS-IQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~-~~~~L~~   33 (106)
                      ++.|+.+|||+|.. +...|.+
T Consensus        32 lv~f~a~wC~~C~~~~~~~l~~   53 (158)
T 3eyt_A           32 VIEAFQMLCPGCVMHGIPLAQK   53 (158)
T ss_dssp             EEEEECTTCHHHHHTHHHHHHH
T ss_pred             EEEEECCcCcchhhhhhHHHHH
Confidence            45589999999998 4666644

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=0.0024  Score=39.36  Aligned_cols=21  Identities=10%  Similarity=-0.181  Sum_probs=15.9

Q ss_pred             EEEEEcCCCch--HHHHHHHHhh
Q 042938           13 VVIFSKSECCI--CFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~--C~~~~~~L~~   33 (106)
                      ++.|+.+|||+  |......|.+
T Consensus        37 ll~F~a~~C~~v~C~~~~~~l~~   59 (150)
T 3fw2_A           37 LINFWASWNDSISQKQSNSELRE   59 (150)
T ss_dssp             EEEEECTTCCCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCchHHHHHHHHHHH
Confidence            45589999999  9977665533

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=97.43  E-value=0.00098  Score=39.77  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=21.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----CCCceEEEc
Q 042938           13 VVIFSKSECCICFSIQTLICGF----GANPTVYEL   43 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~v   43 (106)
                      ++.|+.+|||+|......|.+.    +-.+..+-|
T Consensus        26 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~v~i   60 (138)
T 4evm_A           26 YLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTV   60 (138)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHTCTTTEEEEEE
T ss_pred             EEEEEcCcCHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            4568999999999887666443    334555544

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=97.40  E-value=0.00033  Score=44.57  Aligned_cols=35  Identities=11%  Similarity=0.151  Sum_probs=21.7

Q ss_pred             EEEEEcCCCchHHHH-------HHHHhhc--CCCceEEEcccCC
Q 042938           13 VVIFSKSECCICFSI-------QTLICGF--GANPTVYELDQIP   47 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~-------~~~L~~~--~v~~~~v~vd~~~   47 (106)
                      ++.|+.+|||+|++.       ..+-+.+  ++.+-.+|+|..+
T Consensus        51 lv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~   94 (172)
T 3f9u_A           51 MLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKT   94 (172)
T ss_dssp             EEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCC
T ss_pred             EEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCccc
Confidence            344999999999986       2222222  3555556666554

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=97.40  E-value=0.00059  Score=43.34  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=17.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+|||+|.+....|.++
T Consensus        52 ll~F~a~wC~~C~~~~p~l~~l   73 (165)
T 3s9f_A           52 FFYFSASWCPPCRGFTPQLVEF   73 (165)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEECCcChhHHHHHHHHHHH
Confidence            4558999999999877766443

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=97.39  E-value=0.00033  Score=51.43  Aligned_cols=65  Identities=9%  Similarity=0.069  Sum_probs=42.1

Q ss_pred             HHhhhhCC---C--EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EE
Q 042938            4 VTRMVNEK---P--VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FI   70 (106)
Q Consensus         4 ~~~~~~~~---~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv   70 (106)
                      +.+.+..+   +  ++.|+.+||++|++....+.+.    +  +.+-.+|.+..+   +   ...+++ ..++|++  |.
T Consensus        11 f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~---~---l~~~~~-v~~~Ptl~~~~   83 (481)
T 3f8u_A           11 FESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANT---N---TCNKYG-VSGYPTLKIFR   83 (481)
T ss_dssp             HHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCH---H---HHHHTT-CCEESEEEEEE
T ss_pred             HHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCH---H---HHHhcC-CCCCCEEEEEe
Confidence            45556554   3  5669999999999998888654    2  555566666532   1   233334 4889987  55


Q ss_pred             CCeEe
Q 042938           71 GQRLV   75 (106)
Q Consensus        71 ~g~~i   75 (106)
                      +|+.+
T Consensus        84 ~g~~~   88 (481)
T 3f8u_A           84 DGEEA   88 (481)
T ss_dssp             TTEEE
T ss_pred             CCcee
Confidence            88644

>3ppu_A Glutathione-S-transferase; GST fold; HET: GSH; 2.30A {Phanerochaete chrysosporium}

Probab=97.39  E-value=0.0015  Score=46.93  Aligned_cols=77  Identities=10%  Similarity=0.127  Sum_probs=50.1

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcCCCc--eEEEcccC----------------------CCchHHHHHHHHhCCCC-
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFGANP--TVYELDQI----------------------PNGPQIERALQQLGCQP-   63 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~--~~v~vd~~----------------------~~~~~~~~~l~~~~~~~-   63 (106)
                      ...+..+|+...||||++++-++..+|++.  ....++..                      ...+...+.+.+.+... 
T Consensus        74 e~gry~Ly~s~~CP~a~Rv~i~l~lKGL~~~I~v~~v~~~~~~~gW~f~~~~~~~g~~~d~~~~~e~~~~~y~~~nP~g~  153 (352)
T 3ppu_A           74 EKGRYHLYVSYACPWATRTLIVRKLKGLEDFIGVTVVSPRMGSNGWPFANVDPFPAADSDPLNNAQHVKDLYLKVKPDYD  153 (352)
T ss_dssp             CTTSEEEEECSSCHHHHHHHHHHHHTTCTTTSEEEECCSCCBTTBSBCTTTSCCTTCCCCTTTCCSBHHHHHHHHCTTCC
T ss_pred             CCCcEEEEEeCCCchHHHHHHHHHHcCCCceeEEEEecCCCCCCCceeccccccCCCCcCcccccccchHHHHHhCCCCC
Confidence            345799999999999999999999999863  22222211                      01112233444444334 


Q ss_pred             ---CccEEEE---CCeEeecchHHHhHH
Q 042938           64 ---TVPAVFI---GQRLVGGPNQVMSLH   85 (106)
Q Consensus        64 ---tvP~ifv---~g~~iGg~~~~~~~~   85 (106)
                         +||++..   ++..+.....+....
T Consensus       154 gr~kVPvL~d~~~g~~vl~ES~aI~~YL  181 (352)
T 3ppu_A          154 GRFTVPVLWDKHTGTIVNNESSEIIRMF  181 (352)
T ss_dssp             SCCCSCEEEETTTTEEEECCHHHHHHHH
T ss_pred             CCeeeeEEEEeCCCCEEEecHHHHHHHH
Confidence               9999998   445677777666654

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=97.39  E-value=0.001  Score=40.99  Aligned_cols=22  Identities=18%  Similarity=0.221  Sum_probs=17.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+|||+|......|.+.
T Consensus        32 ll~f~~~~C~~C~~~~~~l~~~   53 (154)
T 3kcm_A           32 IVNFWATWCPPCREEIPSMMRL   53 (154)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHH
Confidence            5568999999999877666543

>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5

Probab=97.31  E-value=0.00014  Score=50.50  Aligned_cols=72  Identities=8%  Similarity=0.004  Sum_probs=50.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhC-CCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLG-CQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~-~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +.+|+-+.||+|.+++-+|...|++|+.+.++.....+...... ..+ ....||++..||..+.....+....
T Consensus         2 ~~Lyy~~~s~~~~~vr~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~ln~P~gkVPvL~d~g~~l~ES~aI~~YL   74 (280)
T 1b8x_A            2 PILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKF-ELGLEFPNLPYYIDGDVKLTQSMAIIRYI   74 (280)
T ss_dssp             CCCEEESSSTTTHHHHHHHHHTTCCCCCEEECSSTTTTTTSSTT-TTCCSSCCSSBEECSSCEECSHHHHHHHH
T ss_pred             cEEEEeCCCchHHHHHHHHHHcCCCcEEEEeCCCChhhhhhhhh-ccCCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            46788889999999999999999999988887431111100011 123 3468999998888888777666543

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=97.27  E-value=0.00085  Score=41.53  Aligned_cols=22  Identities=14%  Similarity=0.226  Sum_probs=17.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+|||+|......|.+.
T Consensus        28 lv~F~a~wC~~C~~~~~~l~~l   49 (151)
T 3raz_A           28 IVNLWATWCGPCRKEMPAMSKW   49 (151)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEEcCcCHHHHHHHHHHHHH
Confidence            4558999999999887777553

>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5

Probab=97.23  E-value=7.9e-05  Score=50.61  Aligned_cols=71  Identities=8%  Similarity=-0.018  Sum_probs=51.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHH--hC-CCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQ--LG-CQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~--~~-~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++++|+.+.||+|.+++-+|...|++|+.+.++.....+.   ....  .+ ...+||++..||..+.....+....
T Consensus         2 ~~~Ly~~~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~---~~~~~~~~~P~g~VPvL~d~~~~l~eS~aI~~yL   75 (254)
T 1bg5_A            2 SPILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKW---RNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYI   75 (254)
T ss_dssp             CCBCCSCSCSTTTHHHHHHHHHTTCCCBCCCCCGGGTHHH---HHHTTTTCCSSCCSSBCCCSSCCCBSHHHHHHHH
T ss_pred             CcEEEEeCCcchhHHHHHHHHHcCCCceEEeeCCCCHHHH---hhcccccCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            3678888999999999999999999999887775311111   2121  23 4568999987777777776666544

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=97.16  E-value=0.0013  Score=39.92  Aligned_cols=33  Identities=18%  Similarity=0.197  Sum_probs=22.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEccc
Q 042938           13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQ   45 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~   45 (106)
                      ++.|+.+|||+|......|.+.       ++.+-.+++|.
T Consensus        38 ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~   77 (145)
T 3erw_A           38 ILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVN   77 (145)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGG
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccC
Confidence            5668999999999887777553       33444455554

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=97.06  E-value=0.0013  Score=47.01  Aligned_cols=65  Identities=8%  Similarity=0.119  Sum_probs=37.4

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHH------HHHh-------hcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQ------TLIC-------GFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV   68 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~------~~L~-------~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i   68 (106)
                      +.+.++.++  ++.|+.|||++|...+      ..++       ..++.+-.+|++..+   +   ...+++. .++|++
T Consensus        23 f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~---~---l~~~~~V-~~~PTl   95 (367)
T 3us3_A           23 YKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDA---A---VAKKLGL-TEEDSI   95 (367)
T ss_dssp             HHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTH---H---HHHHHTC-CSTTEE
T ss_pred             HHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccH---H---HHHHcCC-CcCceE
Confidence            455565555  4559999999984443      1222       223555566666532   2   3334454 788986


Q ss_pred             --EECCeEe
Q 042938           69 --FIGQRLV   75 (106)
Q Consensus        69 --fv~g~~i   75 (106)
                        |.+|+.+
T Consensus        96 ~~f~~G~~~  104 (367)
T 3us3_A           96 YVFKEDEVI  104 (367)
T ss_dssp             EEEETTEEE
T ss_pred             EEEECCcEE
Confidence              5688654

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=97.04  E-value=0.0024  Score=39.76  Aligned_cols=21  Identities=24%  Similarity=0.203  Sum_probs=16.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|......|.+
T Consensus        45 ll~F~~~~C~~C~~~~~~l~~   65 (158)
T 3hdc_A           45 LVNFWASWCPYCRDEMPSMDR   65 (158)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEECCcCHHHHHHHHHHHH
Confidence            566899999999987666644

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=96.05  E-value=0.00011  Score=46.03  Aligned_cols=21  Identities=24%  Similarity=0.426  Sum_probs=17.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|......|.+
T Consensus        37 ll~f~a~~C~~C~~~~~~l~~   57 (159)
T 2ls5_A           37 MLQFTASWCGVCRKEMPFIEK   57 (159)
Confidence            566889999999987776665

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=96.99  E-value=0.0039  Score=39.75  Aligned_cols=48  Identities=10%  Similarity=0.116  Sum_probs=28.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCC
Q 042938           13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGC   61 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~   61 (106)
                      ++.|+.+|||+|......|.+.       ++.+-.+++|.. ....+++++.+++.
T Consensus        64 ll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~  118 (186)
T 1jfu_A           64 LVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTR-DPEKPKTFLKEANL  118 (186)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCS-CTTHHHHHHHHTTC
T ss_pred             EEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCC-CHHHHHHHHHHcCC
Confidence            5668999999999776666443       344444555543 12345556665543

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=96.99  E-value=0.0023  Score=39.14  Aligned_cols=44  Identities=2%  Similarity=-0.086  Sum_probs=26.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCC-----CceEEEcccCCCchHHHHHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGA-----NPTVYELDQIPNGPQIERAL   56 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v-----~~~~v~vd~~~~~~~~~~~l   56 (106)
                      ++.|+.+|||+|......|.+..-     .+..+-|+.+++...+++++
T Consensus        36 ll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~   84 (143)
T 4fo5_A           36 LLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETV   84 (143)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHH
T ss_pred             EEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHH
Confidence            456899999999988776655321     24444444444433333333

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=96.96  E-value=0.0021  Score=48.05  Aligned_cols=51  Identities=18%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC--------------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGFG--------------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~--------------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++.|+.+|||+|++....+.+..              +.+-.+|++..+      +...+++ ...+|++++
T Consensus        46 lV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~------~la~~y~-V~~~PTlil  110 (470)
T 3qcp_A           46 IVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV------DLCRKYD-INFVPRLFF  110 (470)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH------HHHHHTT-CCSSCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH------HHHHHcC-CCccCeEEE
Confidence            56699999999999988886542              334445555432      2333444 488999753

>4gci_A Glutathione S-transferase; GST, enzyme function initiative, structural genomics; HET: GSH; 1.50A {Yersinia pestis} PDB: 4g9h_A*

Probab=96.96  E-value=0.0016  Score=42.75  Aligned_cols=72  Identities=13%  Similarity=0.210  Sum_probs=46.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC-eEeecchHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ-RLVGGPNQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g-~~iGg~~~~~~~   84 (106)
                      -+.+|+.|+ +.+.+++-+|.++|++|+.+.||......+....+.+.+...+||++..+| ..+.....+...
T Consensus         3 mmkLY~~p~-s~s~rvri~L~e~gl~~e~~~vd~~~~~~~~~~~~~~~nP~g~vP~L~~d~~~~l~eS~aI~~Y   75 (211)
T 4gci_A            3 MMKLFYKPG-ACSLSPHIVLREAGLDFSIERVDLVTKKTETGADYLSINPKGQVPALVLDDGSLLTEGVAIVQY   75 (211)
T ss_dssp             CEEEEECTT-STTHHHHHHHHHTTCCEEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEECHHHHHHH
T ss_pred             eEEEEeCCC-CcHHHHHHHHHHhCCCCeEEEecCCCCcccCCHHHHHhCCCCCCCccccCCCCEEecCHHHHHH
Confidence            466888775 336789999999999999887764322111001223346567899998776 556666555443

>3m1g_A Putative glutathione S-transferase; ECM4-like subfamily, GST_C family, structural genomics, PSI- protein structure initiative; 2.10A {Corynebacterium glutamicum}

Probab=96.90  E-value=0.0016  Score=47.12  Aligned_cols=35  Identities=11%  Similarity=0.086  Sum_probs=29.3

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcc
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELD   44 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd   44 (106)
                      ...++.+|+...||+|.+++-+|..+|++ +.+.|+
T Consensus        58 e~gr~~LY~~~~cP~a~Rv~I~L~lkGL~-e~i~vd   92 (362)
T 3m1g_A           58 EAGRYRLVAARACPWAHRTVITRRLLGLE-NVISLG   92 (362)
T ss_dssp             CTTSEEEEECTTCHHHHHHHHHHHHHTCT-TTSEEE
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHHhCCC-ceEEEe
Confidence            35679999999999999999999999998 544443

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=96.88  E-value=0.0014  Score=48.07  Aligned_cols=50  Identities=10%  Similarity=0.137  Sum_probs=32.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC--------CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGFG--------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~--------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++.|+.+||++|++....|.++.        +.+-.+|++.++-.       .. -+..++|++++
T Consensus       374 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~~~~-------~~-~~v~~~Pt~~~  431 (481)
T 3f8u_A          374 LIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATANDVP-------SP-YEVRGFPTIYF  431 (481)
T ss_dssp             EEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSSCCC-------TT-CCCCSSSEEEE
T ss_pred             EEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCchhhH-------hh-CCCcccCEEEE
Confidence            56699999999999998886652        22334455544211       12 23478999865

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=96.82  E-value=0.0015  Score=46.10  Aligned_cols=51  Identities=18%  Similarity=0.259  Sum_probs=32.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCC------CceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGFGA------NPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v------~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++.|+.+||++|++....+.++.-      .+....+|......      .. .+..++|++++
T Consensus       271 lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~~------~~-~~v~~~Pt~~~  327 (361)
T 3uem_A          271 FVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEV------EA-VKVHSFPTLKF  327 (361)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCBC------SS-CCCCSSSEEEE
T ss_pred             EEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccch------hh-cCCcccCeEEE
Confidence            677999999999999988866521      24444455443321      12 23478999753

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=96.77  E-value=0.011  Score=36.60  Aligned_cols=20  Identities=15%  Similarity=0.295  Sum_probs=14.9

Q ss_pred             EEEEEcCCCch-HHHHHHHHh
Q 042938           13 VVIFSKSECCI-CFSIQTLIC   32 (106)
Q Consensus        13 v~vf~~~~Cp~-C~~~~~~L~   32 (106)
                      ++.|+.+|||. |......|.
T Consensus        27 ll~f~~~~C~~~C~~~~~~l~   47 (164)
T 2ggt_A           27 LIYFGFTHCPDVCPEELEKMI   47 (164)
T ss_dssp             EEEEECTTCSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCchhHHHHHHHH
Confidence            55688999997 987655553

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=96.75  E-value=0.0045  Score=48.09  Aligned_cols=51  Identities=18%  Similarity=0.106  Sum_probs=32.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      ++.|+.+||++|++....+.+.      ++.+-.+|++..+   +   ...+++ ..++|++++
T Consensus       679 ~v~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~---~---~~~~~~-v~~~Pt~~~  735 (780)
T 3apo_A          679 VVDFYAPWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYP---Q---TCQKAG-IKAYPSVKL  735 (780)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCH---H---HHHHTT-CCSSSEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCH---H---HHHhcC-CCcCCEEEE
Confidence            5668999999999988777553      2344455554432   1   223334 488999754

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=96.75  E-value=0.0018  Score=50.37  Aligned_cols=63  Identities=13%  Similarity=0.024  Sum_probs=37.9

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE--ECCe
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF--IGQR   73 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if--v~g~   73 (106)
                      +.+.+..++  ++.|+.+||++|+++...+.+.      .+.+-.+|++.+++...      +++ ...+|+++  .+|+
T Consensus       126 f~~~i~~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~------~~~-v~~~Pt~~~~~~g~  198 (780)
T 3apo_A          126 FDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCR------MKG-VNSYPSLFIFRSGM  198 (780)
T ss_dssp             HHHHHTSSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC---------------CEEEEECTTS
T ss_pred             HHhhhcCCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHH------HcC-CceeeeEEEEeCCc
Confidence            455565544  5679999999999999888653      25566677776654332      223 36788874  4665

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=95.67  E-value=0.00029  Score=42.96  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=17.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+|||+|......|.+.
T Consensus        30 ll~F~a~wC~~C~~~~~~l~~~   51 (143)
T 2lus_A           30 GFYFSAHWCPPCRGFTPILADM   51 (143)
Confidence            5668999999999887777553

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=96.65  E-value=0.0088  Score=38.06  Aligned_cols=80  Identities=11%  Similarity=0.054  Sum_probs=43.1

Q ss_pred             EEEEcCCCchHHHHHHH-H------hhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE-EEC---Ce---Eeecch
Q 042938           14 VIFSKSECCICFSIQTL-I------CGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV-FIG---QR---LVGGPN   79 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~-L------~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i-fv~---g~---~iGg~~   79 (106)
                      +.|+.+||++|++..+. |      +.++-.|..+.+|.+.  .+-+.++..++. ..+|.+ |++   |+   .+||. 
T Consensus        47 vd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~~d~~~--~~~~~l~~~y~v-~~~P~~~fld~~~G~~l~~~~g~-  122 (153)
T 2dlx_A           47 INIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDS--EEGQRYIQFYKL-GDFPYVSILDPRTGQKLVEWHQL-  122 (153)
T ss_dssp             EEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSS--HHHHHHHHHHTC-CSSSEEEEECTTTCCCCEEESSC-
T ss_pred             EEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEEEecCC--HhHHHHHHHcCC-CCCCEEEEEeCCCCcEeeecCCC-
Confidence            44788999999977432 2      2222256656555533  222344555554 788987 554   42   35553 


Q ss_pred             HHHhHHHhCCchHHHHhcCc
Q 042938           80 QVMSLHVQNELGPLLVRAGA   99 (106)
Q Consensus        80 ~~~~~~~~g~L~~~L~~~g~   99 (106)
                      +..++.+  .|.+.+++.+.
T Consensus       123 ~~~~fl~--~L~~~l~~~~~  140 (153)
T 2dlx_A          123 DVSSFLD--QVTGFLGEHGQ  140 (153)
T ss_dssp             CHHHHHH--HHHHHHHHTCS
T ss_pred             CHHHHHH--HHHHHHHhcCC
Confidence            3333322  45566665554

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=96.62  E-value=0.0036  Score=42.38  Aligned_cols=67  Identities=24%  Similarity=0.327  Sum_probs=40.6

Q ss_pred             HHhhhhC--CC-EEEEEcCC--CchHHHHHHHHhhcC-----------CCceEEEcccCCCchHHHHHHHHhCCCCCccE
Q 042938            4 VTRMVNE--KP-VVIFSKSE--CCICFSIQTLICGFG-----------ANPTVYELDQIPNGPQIERALQQLGCQPTVPA   67 (106)
Q Consensus         4 ~~~~~~~--~~-v~vf~~~~--Cp~C~~~~~~L~~~~-----------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~   67 (106)
                      +++++..  .+ ++.|+.+|  |++|..++.++.+..           +.+..+|.+.+   .+   ....++. ..+|+
T Consensus        17 l~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~---~~---~~~~~gv-~~~Pt   89 (243)
T 2hls_A           17 LRETLAEMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESD---SD---KFSEFKV-ERVPT   89 (243)
T ss_dssp             HHHHHTTCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTT---HH---HHHHTTC-CSSSE
T ss_pred             HHHHHHhCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcC---HH---HHHhcCC-CcCCE
Confidence            4444443  34 45678888  999999998887642           44444554432   22   3344454 68999


Q ss_pred             EEE-CC--eEeec
Q 042938           68 VFI-GQ--RLVGG   77 (106)
Q Consensus        68 ifv-~g--~~iGg   77 (106)
                      +.+ +|  ++.|.
T Consensus        90 ~~i~~g~~~~~G~  102 (243)
T 2hls_A           90 VAFLGGEVRWTGI  102 (243)
T ss_dssp             EEETTTTEEEESC
T ss_pred             EEEECCceeEcCC
Confidence            866 44  45553

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=96.61  E-value=0.0037  Score=44.19  Aligned_cols=62  Identities=10%  Similarity=0.110  Sum_probs=35.4

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHH-------H----hh---cCCCceEEEcccCCCchHHHHHHHHhCCCCCccE
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTL-------I----CG---FGANPTVYELDQIPNGPQIERALQQLGCQPTVPA   67 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~-------L----~~---~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~   67 (106)
                      +.+.+..++  ++.|+.|||+ |++....       +    +.   .++.+-.+|++..+      +...+++. .++|+
T Consensus        21 f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~------~l~~~~~v-~~~Pt   92 (350)
T 1sji_A           21 FKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEA------KLAKKLGF-DEEGS   92 (350)
T ss_dssp             HHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTH------HHHHHHTC-CSTTE
T ss_pred             HHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCH------HHHHhcCC-Cccce
Confidence            455665555  4569999999 8533222       2    22   24555556665542      23334454 78898


Q ss_pred             E--EECCe
Q 042938           68 V--FIGQR   73 (106)
Q Consensus        68 i--fv~g~   73 (106)
                      +  |.+|+
T Consensus        93 ~~~~~~g~  100 (350)
T 1sji_A           93 LYVLKGDR  100 (350)
T ss_dssp             EEEEETTE
T ss_pred             EEEEECCc
Confidence            7  45886

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=96.59  E-value=0.031  Score=33.63  Aligned_cols=65  Identities=22%  Similarity=0.377  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCCCch---H-----------HHHHHHHhhcCCCceEEEcccCCCc----hHHHHHHHHhCCCCCccEEEEC
Q 042938           10 EKPVVIFSKSECCI---C-----------FSIQTLICGFGANPTVYELDQIPNG----PQIERALQQLGCQPTVPAVFIG   71 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~---C-----------~~~~~~L~~~~v~~~~v~vd~~~~~----~~~~~~l~~~~~~~tvP~ifv~   71 (106)
                      +++|.||--.-|..   |           .....+|++.|++.+.+++.++|..    +.+.+.|...|. ..+|.++||
T Consensus         4 M~~i~ifepamCCstGvCG~~vd~eL~~~~~~~~~lk~~Gi~V~RyNL~~~P~~F~~N~~V~~~L~~~G~-~~LP~~~VD   82 (106)
T 3ktb_A            4 MKKIEIFDPAMCCPTGLCGTNINPELMRIAVVIESLKKQGIIVTRHNLRDEPQVYVSNKTVNDFLQKHGA-DALPITLVD   82 (106)
T ss_dssp             CCCEEEEECSCSSTTSCSSSCCCHHHHHHHHHHHHHHHTTCCCEEEETTTCTTHHHHSHHHHHHHHTTCG-GGCSEEEET
T ss_pred             CceEEEechhhccCCCCcCCCCCHHHHHHHHHHHHHHHCCCEEEEEccccChHHHhcCHHHHHHHHHcCc-ccCCEEEEC
Confidence            57889997655433   2           2446777888999999999999874    337777776664 899999999


Q ss_pred             CeEe
Q 042938           72 QRLV   75 (106)
Q Consensus        72 g~~i   75 (106)
                      |+.+
T Consensus        83 Gevv   86 (106)
T 3ktb_A           83 GEIA   86 (106)
T ss_dssp             TEEE
T ss_pred             CEEE
Confidence            9865

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=96.51  E-value=0.0079  Score=45.28  Aligned_cols=52  Identities=17%  Similarity=0.175  Sum_probs=32.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc---------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF---------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~---------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      ++.|+.+||++|++....+.+.         ++.+-.+|++.+.. .   +...+++ ...+|+++
T Consensus        34 lV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~-~---~l~~~~~-V~~~PTl~   94 (519)
T 3t58_A           34 AVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETN-S---AVCREFN-IAGFPTVR   94 (519)
T ss_dssp             EEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGG-H---HHHHHTT-CCSBSEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCcccc-H---HHHHHcC-CcccCEEE
Confidence            5669999999999998888553         23344455543222 2   2333445 48899974

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=96.50  E-value=0.0074  Score=38.70  Aligned_cols=33  Identities=15%  Similarity=0.306  Sum_probs=22.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEccc
Q 042938           13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQ   45 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~   45 (106)
                      ++.|+.+|||+|......|.++       ++.+-.+++|.
T Consensus        50 lv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~   89 (196)
T 2ywi_A           50 VIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSND   89 (196)
T ss_dssp             EEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSC
T ss_pred             EEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCc
Confidence            6678999999998766555432       45555666653

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=96.47  E-value=0.0055  Score=39.13  Aligned_cols=46  Identities=17%  Similarity=0.195  Sum_probs=27.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhh----cCC-CceEE--Eccc-----CCCchHHHHHHHH
Q 042938           13 VVIFSKSECCICFSIQTLICG----FGA-NPTVY--ELDQ-----IPNGPQIERALQQ   58 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~----~~v-~~~~v--~vd~-----~~~~~~~~~~l~~   58 (106)
                      ++.|+.+|||.|......|.+    ++- .+..+  .+|.     ..+.+++++++++
T Consensus        42 lv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~   99 (180)
T 3kij_A           42 LVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARK   99 (180)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred             EEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHH
Confidence            455899999999976655543    322 24444  4443     1244557777776

>2fno_A AGR_PAT_752P; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics, JCSG; 2.00A {Agrobacterium tumefaciens} SCOP: a.45.1.1 c.47.1.5

Probab=96.45  E-value=0.006  Score=41.22  Aligned_cols=70  Identities=10%  Similarity=-0.007  Sum_probs=50.1

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHH-----HhCCCCCccEE--EECCeEeecchHH
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQ-----QLGCQPTVPAV--FIGQRLVGGPNQV   81 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~-----~~~~~~tvP~i--fv~g~~iGg~~~~   81 (106)
                      ++..+.+|+.+.++.|.+++-+|...|++|+.+.++..      .....     +.+....||++  ..||..+....-+
T Consensus        16 ~~~~~~Ly~~~~~~~~~~vrl~L~e~gi~ye~~~~~~~------~~~~~~~~~~~~nP~gkVPvL~~~d~g~~l~ES~AI   89 (248)
T 2fno_A           16 GMNTFDLYYWPVPFRGQLIRGILAHCGCSWDEHDVDAI------EGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMPAI   89 (248)
T ss_dssp             SCBSEEEECCSSSSTTHHHHHHHHHTTCCEECCCHHHH------HHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHHHH
T ss_pred             CCCceEEEecCCCCchHHHHHHHHHcCCCcEeeccchH------HHHHhccccccCCCCCCCCEEEeccCCEEEecHHHH
Confidence            45578999999778899999999999999998766521      11111     13556789999  5577777776655


Q ss_pred             HhH
Q 042938           82 MSL   84 (106)
Q Consensus        82 ~~~   84 (106)
                      ...
T Consensus        90 ~~Y   92 (248)
T 2fno_A           90 AIY   92 (248)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=96.38  E-value=0.035  Score=33.63  Aligned_cols=69  Identities=16%  Similarity=0.294  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCCch---H-----------HHHHHHHhhcCCCceEEEcccCCCc----hHHHHHHHHhCCCCCccEEEEC
Q 042938           10 EKPVVIFSKSECCI---C-----------FSIQTLICGFGANPTVYELDQIPNG----PQIERALQQLGCQPTVPAVFIG   71 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~---C-----------~~~~~~L~~~~v~~~~v~vd~~~~~----~~~~~~l~~~~~~~tvP~ifv~   71 (106)
                      +++|.||--.-|..   |           .....+|++.|++.+.+++.++|..    ..+.+.|...|. ..+|.++||
T Consensus         1 M~~i~ifepamCCstGvCG~~vd~~L~~~~~~~~~lk~~Gi~V~RyNL~~~P~aF~~N~~V~~~L~~~G~-~~LP~~~VD   79 (110)
T 3kgk_A            1 MKTLMVFDPAMAASTGVCGTDVDQALVDFSTDVQWLKQSGVQIERFNLAQQPMSFVQNEKVKAFIEASGA-EGLPLLLLD   79 (110)
T ss_dssp             CCCEEEEECC-------------CHHHHHHHHHHHHHHHTCCEEEEETTTCTTHHHHSHHHHHHHHHHCG-GGCCEEEET
T ss_pred             CCceEEecchhccccCCcCCCCCHHHHHHHHHHHHHHHCCCeEEEEccccChHHHhcCHHHHHHHHHcCc-ccCCEEEEC
Confidence            45788887655421   1           1445777888999999999999874    337778877775 899999999


Q ss_pred             CeEe--ecch
Q 042938           72 QRLV--GGPN   79 (106)
Q Consensus        72 g~~i--Gg~~   79 (106)
                      |+.+  |.+-
T Consensus        80 Gevv~~G~yP   89 (110)
T 3kgk_A           80 GETVMAGRYP   89 (110)
T ss_dssp             TEEEEESSCC
T ss_pred             CEEEEeccCC
Confidence            9864  4443

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=96.26  E-value=0.01  Score=36.93  Aligned_cols=45  Identities=16%  Similarity=0.134  Sum_probs=26.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEccc-----CCCchHHHHHHH
Q 042938           13 VVIFSKSECCICFSIQTLICG-------FGANPTVYELDQ-----IPNGPQIERALQ   57 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~-----~~~~~~~~~~l~   57 (106)
                      ++.|+.+|||.|......|.+       .++.+-.+++|.     ......++++++
T Consensus        36 ll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~   92 (170)
T 2p5q_A           36 LIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVC   92 (170)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHH
T ss_pred             EEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Confidence            566889999999876555543       244454555553     123344566665

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=96.25  E-value=0.0099  Score=38.14  Aligned_cols=47  Identities=15%  Similarity=0.077  Sum_probs=27.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEccc----CC-CchHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICG-------FGANPTVYELDQ----IP-NGPQIERALQQL   59 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~----~~-~~~~~~~~l~~~   59 (106)
                      ++.|+.+|||.|......|.+       .++.+--+.+|.    .+ +.+.++++++++
T Consensus        53 lv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~~~~  111 (185)
T 2gs3_A           53 IVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGY  111 (185)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHT
T ss_pred             EEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHHHHc
Confidence            566899999999866555533       244454555553    11 234455565543

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=96.24  E-value=0.013  Score=36.50  Aligned_cols=22  Identities=14%  Similarity=0.250  Sum_probs=16.6

Q ss_pred             EEEEEcCCCch-HHHHHHHHhhc
Q 042938           13 VVIFSKSECCI-CFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~-C~~~~~~L~~~   34 (106)
                      ++.|+.+|||. |......|.+.
T Consensus        39 ll~f~~~~C~~~C~~~~~~l~~~   61 (172)
T 2k6v_A           39 LLFFGFTRCPDVCPTTLLALKRA   61 (172)
T ss_dssp             EEEEECTTCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcchhHHHHHHHHHH
Confidence            56689999996 99877666543

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=96.12  E-value=0.011  Score=37.69  Aligned_cols=32  Identities=16%  Similarity=0.137  Sum_probs=21.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEcc
Q 042938           13 VVIFSKSECCICFSIQTLICG-------FGANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd   44 (106)
                      ++.|+.+|||.|......|.+       .++.+-.+++|
T Consensus        51 ll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   89 (183)
T 2obi_A           51 IVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCN   89 (183)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence            566899999999866555533       34555555555

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=96.09  E-value=0.016  Score=37.26  Aligned_cols=32  Identities=9%  Similarity=0.034  Sum_probs=21.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEcc
Q 042938           13 VVIFSKSECCICFSIQTLICG-------FGANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd   44 (106)
                      ++.|+.+|||.|......|.+       .++.+-.+++|
T Consensus        52 ll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   90 (190)
T 2vup_A           52 LIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCN   90 (190)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             EEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcC
Confidence            566899999999766555433       35666666666

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=96.08  E-value=0.013  Score=38.75  Aligned_cols=55  Identities=13%  Similarity=-0.050  Sum_probs=31.5

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEccc----CC-CchHHHHHHHH-----hCCCCCccEE
Q 042938           13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQ----IP-NGPQIERALQQ-----LGCQPTVPAV   68 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~----~~-~~~~~~~~l~~-----~~~~~tvP~i   68 (106)
                      ++.|+.+|||.|......|.++       ++.+--+++|.    .+ ..++++++++.     ..+ .++|.+
T Consensus        51 lv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~~~i~~f~~~~~~~~~~~-~~fp~l  122 (208)
T 2f8a_A           51 LIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFE-PNFMLF  122 (208)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHHHHHHTSSCTTCC-CSSEEB
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCHHHHHHHHHhcccccccc-cceEEE
Confidence            5668999999998755555432       34444455552    22 23456667651     222 467765

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=96.01  E-value=0.013  Score=43.34  Aligned_cols=52  Identities=10%  Similarity=0.171  Sum_probs=32.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc---------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCe
Q 042938           13 VVIFSKSECCICFSIQTLICGF---------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQR   73 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~---------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~   73 (106)
                      ++.|+.+||++|++....+.++         ++.+-.+|.+.++..        .++ ..++|++++  +|+
T Consensus       380 lv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~--------~~~-v~~~Pt~~~~~~G~  442 (504)
T 2b5e_A          380 LVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR--------GVV-IEGYPTIVLYPGGK  442 (504)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS--------SCC-CSSSSEEEEECCTT
T ss_pred             EEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc--------cCC-ceecCeEEEEeCCc
Confidence            4668999999999988877553         233334455444321        123 478998753  663

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=95.93  E-value=0.019  Score=35.71  Aligned_cols=32  Identities=6%  Similarity=0.063  Sum_probs=21.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEcc
Q 042938           13 VVIFSKSECCICFSIQTLICG-------FGANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd   44 (106)
                      ++.|+.+|||.|......|.+       .++.+-.+.+|
T Consensus        35 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d   73 (169)
T 2v1m_A           35 LIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCN   73 (169)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             EEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECC
Confidence            566889999999866555533       34555555555

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=95.91  E-value=0.02  Score=36.58  Aligned_cols=46  Identities=17%  Similarity=0.149  Sum_probs=27.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEccc----C-CCchHHHHHHHH
Q 042938           13 VVIFSKSECCICFSIQTLICG-------FGANPTVYELDQ----I-PNGPQIERALQQ   58 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~----~-~~~~~~~~~l~~   58 (106)
                      ++.|+.+|||.|.+....|.+       .++.+-.+++|.    . .+.+.+++++++
T Consensus        53 lv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~  110 (181)
T 2p31_A           53 LVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARR  110 (181)
T ss_dssp             EEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHH
T ss_pred             EEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHh
Confidence            566899999999976655543       234444555553    1 133456666665

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=95.89  E-value=0.019  Score=37.81  Aligned_cols=47  Identities=11%  Similarity=0.178  Sum_probs=22.3

Q ss_pred             CCCchHHHHHHHHhhc------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           19 SECCICFSIQTLICGF------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        19 ~~Cp~C~~~~~~L~~~------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      +||++|..+...+.+.      .-.....-||-+.+ .+   ...+++ ...+|++.+
T Consensus        35 ~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~-~~---l~~~~~-v~~~Ptl~~   87 (229)
T 2ywm_A           35 ESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTH-KE---ETEKYG-VDRVPTIVI   87 (229)
T ss_dssp             GGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTC-HH---HHHHTT-CCBSSEEEE
T ss_pred             cccHHHHHHHHHHHHHHhccCCCCceEEEEecCccc-HH---HHHHcC-CCcCcEEEE
Confidence            3444455555555544      32333333443332 22   333344 478998754

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=95.89  E-value=0.026  Score=34.88  Aligned_cols=22  Identities=14%  Similarity=0.176  Sum_probs=17.0

Q ss_pred             EEEEE-cCCCchHHHHHHHHhhc
Q 042938           13 VVIFS-KSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+ .+|||.|......|.+.
T Consensus        40 vl~F~~a~~C~~C~~~~~~l~~~   62 (160)
T 1xvw_A           40 LLVFFPLAFTGICQGELDQLRDH   62 (160)
T ss_dssp             EEEECSCTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCchHHHHHHHHHH
Confidence            45576 99999999887777654

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=95.85  E-value=0.0079  Score=36.75  Aligned_cols=51  Identities=14%  Similarity=0.110  Sum_probs=31.0

Q ss_pred             CCEEE-EEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCC--ccEEE
Q 042938           11 KPVVI-FSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPT--VPAVF   69 (106)
Q Consensus        11 ~~v~v-f~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~t--vP~if   69 (106)
                      .++++ |+.+ |+.|+.....|++..      +.|-.+|+|..+.      .+..++. ++  +|++.
T Consensus        24 ~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~------~a~~~gi-~~~~iPtl~   83 (133)
T 2djk_A           24 IPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGA------HAGNLNL-KTDKFPAFA   83 (133)
T ss_dssp             SCEEEEECSC-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGG------GTTTTTC-CSSSSSEEE
T ss_pred             CCEEEEEecC-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHH------HHHHcCC-CcccCCEEE
Confidence            45544 5666 999998888886642      4455666665443      2223343 56  99863

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=95.72  E-value=0.02  Score=37.79  Aligned_cols=21  Identities=19%  Similarity=0.395  Sum_probs=15.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|......|.+
T Consensus        63 ll~F~a~~C~~C~~~~~~l~~   83 (218)
T 3u5r_E           63 LVAFISNRCPFVVLIREALAK   83 (218)
T ss_dssp             EEEECCSSCHHHHTTHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            566899999999866655533

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=95.71  E-value=0.019  Score=35.11  Aligned_cols=33  Identities=21%  Similarity=0.513  Sum_probs=28.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcc
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELD   44 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd   44 (106)
                      .+++|++|.|+-|.-+.++|..+.-+|+.+-|+
T Consensus         4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVN   36 (124)
T 2g2q_A            4 VLIIFGKPYCSICENVSDAVEELKSEYDILHVD   36 (124)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHTTTTTEEEEEEE
T ss_pred             eEEEeCCCccHHHHHHHHHHHHhhccccEEEEE
Confidence            478999999999999999999998888876544

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=95.68  E-value=0.052  Score=34.50  Aligned_cols=20  Identities=15%  Similarity=0.180  Sum_probs=15.2

Q ss_pred             EEEEEcCCCchHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLIC   32 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~   32 (106)
                      ++.|+.+|||+|......|.
T Consensus        37 lv~F~a~~C~~C~~~~~~l~   56 (188)
T 2cvb_A           37 AVVFMCNHCPYVKGSIGELV   56 (188)
T ss_dssp             EEEEECSSCHHHHTTHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHH
Confidence            56689999999986555543

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=95.61  E-value=0.023  Score=50.15  Aligned_cols=73  Identities=5%  Similarity=-0.092  Sum_probs=53.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .++|+-+.+|+|.+++-+|...|++|+.+.++.......-.+.+...+....||++..||..+.....+....
T Consensus         2 mkLyY~~~s~~a~kVrl~L~e~Gl~ye~~~vd~~~~e~~~~~e~l~iNP~GkVPvLvDdg~vL~ES~AIl~YL   74 (2695)
T 4akg_A            2 PILGYWKIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYI   74 (2695)
T ss_dssp             CEEEEESSSGGGHHHHHHHHHTTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEESSSCEEESHHHHHHHH
T ss_pred             cEEEEcCCChhHHHHHHHHHHcCCCcEEEEeCCCcccccCCHhHHhhCCCCCCCEEEECCEEEECHHHHHHHH
Confidence            4688889999999999999999999999988864321111122222355679999988888887776665543

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=95.59  E-value=0.028  Score=35.31  Aligned_cols=31  Identities=10%  Similarity=0.075  Sum_probs=20.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEcc
Q 042938           13 VVIFSKSECCICFSIQTLICG-------FGANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd   44 (106)
                      ++.|+.+|||.|. ....|.+       .++.+-.+++|
T Consensus        36 ll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d   73 (171)
T 3cmi_A           36 LIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCN   73 (171)
T ss_dssp             EEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred             EEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECc
Confidence            5668999999999 5555533       24555555554

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=95.51  E-value=0.0048  Score=39.75  Aligned_cols=32  Identities=9%  Similarity=0.027  Sum_probs=21.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhh-------cCCCceEEEcc
Q 042938           13 VVIFSKSECCICFSIQTLICG-------FGANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd   44 (106)
                      ++.|+.+|||+|......|.+       .++.+-.+.+|
T Consensus        50 lv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d   88 (187)
T 3dwv_A           50 LIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSN   88 (187)
T ss_dssp             EEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBC
T ss_pred             EEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECc
Confidence            455899999999865544433       34555555555

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=95.51  E-value=0.055  Score=33.60  Aligned_cols=19  Identities=16%  Similarity=0.314  Sum_probs=14.5

Q ss_pred             EEEEEcCCCch-HHHHHHHH
Q 042938           13 VVIFSKSECCI-CFSIQTLI   31 (106)
Q Consensus        13 v~vf~~~~Cp~-C~~~~~~L   31 (106)
                      ++.|+.+|||. |......|
T Consensus        30 ll~F~~~~C~~~C~~~~~~l   49 (171)
T 2rli_A           30 LMYFGFTHCPDICPDELEKL   49 (171)
T ss_dssp             EEEEECTTCSSSHHHHHHHH
T ss_pred             EEEEEcCCCCchhHHHHHHH
Confidence            56689999998 98765554

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=95.49  E-value=0.062  Score=33.42  Aligned_cols=21  Identities=14%  Similarity=0.032  Sum_probs=16.2

Q ss_pred             EEEEE-cCCCchHHHHHHHHhh
Q 042938           13 VVIFS-KSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+ .+|||.|......|.+
T Consensus        33 vl~F~~a~~C~~C~~~~~~l~~   54 (161)
T 3drn_A           33 VLYFYPKDDTPGSTREASAFRD   54 (161)
T ss_dssp             EEEECSCTTCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCchHHHHHHHHH
Confidence            55577 9999999987766654

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=95.28  E-value=0.037  Score=39.70  Aligned_cols=21  Identities=19%  Similarity=0.385  Sum_probs=16.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|.+....|.+
T Consensus        86 Ll~F~atwC~~C~~~~p~L~~  106 (352)
T 2hyx_A           86 LIDFWAYSCINCQRAIPHVVG  106 (352)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEECCCChhHHHHHHHHHH
Confidence            556899999999987766644

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=95.18  E-value=0.0099  Score=41.45  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=18.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHh
Q 042938           12 PVVIFSKSECCICFSIQTLIC   32 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~   32 (106)
                      .|++|+-+.||||+++...+.
T Consensus       150 ~I~vFtDp~CPYCkkl~~~l~  170 (273)
T 3tdg_A          150 ILYIVSDPMCPHCQKELTKLR  170 (273)
T ss_dssp             EEEEEECTTCHHHHHHHHTHH
T ss_pred             EEEEEECcCChhHHHHHHHHH
Confidence            489999999999999876665

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=95.15  E-value=0.069  Score=33.05  Aligned_cols=44  Identities=11%  Similarity=-0.079  Sum_probs=24.7

Q ss_pred             EEEEEc-CCCchHHHHHHHHhh-------cCCCceEEEcccCCCchHHHHHHHHh
Q 042938           13 VVIFSK-SECCICFSIQTLICG-------FGANPTVYELDQIPNGPQIERALQQL   59 (106)
Q Consensus        13 v~vf~~-~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~~~~~~~~~~~l~~~   59 (106)
                      ++.|+. +|||.|......|.+       .++.+--+.+|   ....++++++.+
T Consensus        39 vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d---~~~~~~~~~~~~   90 (163)
T 3gkn_A           39 VIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRD---SVKSHDNFCAKQ   90 (163)
T ss_dssp             EEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESS---CHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHHh
Confidence            455665 899999865554433       34555445554   233344555443

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=95.10  E-value=0.094  Score=32.78  Aligned_cols=58  Identities=9%  Similarity=-0.073  Sum_probs=30.1

Q ss_pred             hCCCEE-EEE-cCCCchHH-HHHHHH-------hhcCCC-ceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938            9 NEKPVV-IFS-KSECCICF-SIQTLI-------CGFGAN-PTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus         9 ~~~~v~-vf~-~~~Cp~C~-~~~~~L-------~~~~v~-~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      +.++++ .|+ .+|||.|. .-...|       .+.|+. +--+.+|.   ...+++++++.+...++|.+.
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~---~~~~~~~~~~~~~~~~~~~l~  102 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVND---PFVMKAWAKSYPENKHVKFLA  102 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSC---HHHHHHHHHTCTTCSSEEEEE
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC---HHHHHHHHHhcCCCCCeEEEE
Confidence            334444 455 68999999 333222       335676 65555542   234555555544211466443

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=95.01  E-value=0.021  Score=37.59  Aligned_cols=35  Identities=20%  Similarity=0.433  Sum_probs=26.8

Q ss_pred             CEEEEEcCCCchHHHHHHHH---hhc------CCCceEEEcccC
Q 042938           12 PVVIFSKSECCICFSIQTLI---CGF------GANPTVYELDQI   46 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L---~~~------~v~~~~v~vd~~   46 (106)
                      .|+-|+..|||+|.++...|   .++      ++.+..++++..
T Consensus       116 ~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          116 QVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             SEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             EEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            46779999999999999776   443      466777888764

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=94.96  E-value=0.016  Score=37.69  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=19.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhc
Q 042938           12 PVVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      .|+.|+..+||+|.++...+.++
T Consensus        27 ~vv~f~d~~Cp~C~~~~~~l~~~   49 (193)
T 3hz8_A           27 EVLEFFGYFCPHCAHLEPVLSKH   49 (193)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCChhHHHHHHHHHHH
Confidence            37779999999999988777554

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=94.85  E-value=0.1  Score=33.11  Aligned_cols=52  Identities=6%  Similarity=0.007  Sum_probs=29.7

Q ss_pred             EEEcCCCchHHHH-HHHH-------hhcCCC-ceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938           15 IFSKSECCICFSI-QTLI-------CGFGAN-PTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus        15 vf~~~~Cp~C~~~-~~~L-------~~~~v~-~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      .|..+|||.|..- ...|       .+.|+. +--+.+|.   ...++.++++.+....+|.+.
T Consensus        50 ~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~---~~~~~~~~~~~~~~~~fp~l~  110 (171)
T 2pwj_A           50 GLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAIND---PYTVNAWAEKIQAKDAIEFYG  110 (171)
T ss_dssp             ECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSC---HHHHHHHHHHTTCTTTSEEEE
T ss_pred             EecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCC---HHHHHHHHHHhCCCCceEEEE
Confidence            3678999999864 4333       334666 55555543   234555665554312577543

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=94.80  E-value=0.1  Score=35.45  Aligned_cols=66  Identities=8%  Similarity=-0.019  Sum_probs=36.0

Q ss_pred             HHhhhhCCC--EEEEEc--CCCchHHHHHHHHhhc----CCCceEEEccc--CCCchHHHHHHHHhCCCC--CccEE--E
Q 042938            4 VTRMVNEKP--VVIFSK--SECCICFSIQTLICGF----GANPTVYELDQ--IPNGPQIERALQQLGCQP--TVPAV--F   69 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~--~~Cp~C~~~~~~L~~~----~v~~~~v~vd~--~~~~~~~~~~l~~~~~~~--tvP~i--f   69 (106)
                      +.+.+...+  ++.|+.  |||+.......+-..+    ++.+-.+|+|.  .....+   ...+++. .  ++|++  |
T Consensus        15 F~~~i~~~~~vlV~FyA~~pWCgl~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~---l~~~~~V-~~~~~PTl~~f   90 (240)
T 2qc7_A           15 FYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNME---LSEKYKL-DKESYPVFYLF   90 (240)
T ss_dssp             HHHHGGGCSEEEEEECCSSCCSHHHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHH---HHHHTTC-CGGGCSEEEEE
T ss_pred             HHHHHcCCCCEEEEEeCCCCCCcchHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHH---HHHHcCC-CCCCCCEEEEE
Confidence            445555544  455888  9999444444444444    24455556554  222233   3334444 6  89987  4


Q ss_pred             ECCe
Q 042938           70 IGQR   73 (106)
Q Consensus        70 v~g~   73 (106)
                      .+|+
T Consensus        91 ~~G~   94 (240)
T 2qc7_A           91 RDGD   94 (240)
T ss_dssp             ETTC
T ss_pred             eCCC
Confidence            5776

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=94.59  E-value=0.19  Score=31.83  Aligned_cols=58  Identities=10%  Similarity=-0.066  Sum_probs=30.6

Q ss_pred             hCCCEEE-EE-cCCCchHHH-HHHHH-------hhcCC-CceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938            9 NEKPVVI-FS-KSECCICFS-IQTLI-------CGFGA-NPTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus         9 ~~~~v~v-f~-~~~Cp~C~~-~~~~L-------~~~~v-~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      +..++++ |. .+|||.|.. -...|       .+.|+ .+--+.+|   +...+++++++.+....+|.+.
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d---~~~~~~~~~~~~~~~~~fp~l~   98 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVN---DSFVMDAWGKAHGADDKVQMLA   98 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESS---CHHHHHHHHHHTTCTTTSEEEE
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCC---CHHHHHHHHHhcCCCcceEEEE
Confidence            4444544 43 799999997 33333       33466 44444444   2334555665554311366543

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=94.49  E-value=0.17  Score=32.77  Aligned_cols=21  Identities=19%  Similarity=0.248  Sum_probs=15.6

Q ss_pred             EEEEEcCCCch-HHHHHHHHhh
Q 042938           13 VVIFSKSECCI-CFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~-C~~~~~~L~~   33 (106)
                      ++.|+.+|||. |......|.+
T Consensus        45 lv~F~at~C~~vC~~~~~~l~~   66 (200)
T 2b7k_A           45 IIYFGFSNCPDICPDELDKLGL   66 (200)
T ss_dssp             EEEEECTTCCSHHHHHHHHHHH
T ss_pred             EEEEECCCCcchhHHHHHHHHH
Confidence            56689999997 9876655544

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=94.34  E-value=0.093  Score=33.72  Aligned_cols=32  Identities=22%  Similarity=0.228  Sum_probs=21.0

Q ss_pred             EEEEE-cCCCchHHHHHHHHhhc-------CCCceEEEcc
Q 042938           13 VVIFS-KSECCICFSIQTLICGF-------GANPTVYELD   44 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd   44 (106)
                      ++.|+ .+|||.|......|.+.       ++.+-.+.+|
T Consensus        49 vl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d   88 (195)
T 2bmx_A           49 VVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSID   88 (195)
T ss_dssp             EEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESS
T ss_pred             EEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence            55577 89999998776666443       4444445554

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=94.29  E-value=0.088  Score=32.74  Aligned_cols=16  Identities=25%  Similarity=0.532  Sum_probs=12.1

Q ss_pred             EEEEEcCCCc-hHHHHH
Q 042938           13 VVIFSKSECC-ICFSIQ   28 (106)
Q Consensus        13 v~vf~~~~Cp-~C~~~~   28 (106)
                      ++.|+.+||| .|....
T Consensus        37 ll~f~~~~C~~~C~~~~   53 (174)
T 1xzo_A           37 LADFIFTNCETICPPMT   53 (174)
T ss_dssp             EEEEECSCCSSCCCSHH
T ss_pred             EEEEEcCCCcchhHHHH
Confidence            5668999999 995433

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=94.14  E-value=0.17  Score=32.77  Aligned_cols=59  Identities=12%  Similarity=0.010  Sum_probs=31.5

Q ss_pred             hhCCCEEE--EEcCCCchHHH-HHHHH-------hhcCCC-ceEEEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938            8 VNEKPVVI--FSKSECCICFS-IQTLI-------CGFGAN-PTVYELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus         8 ~~~~~v~v--f~~~~Cp~C~~-~~~~L-------~~~~v~-~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      .+..++++  |..+|||.|.. -...|       .+.|+. +--+.+|.   ...+++++++.+....+|.+.
T Consensus        54 ~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~---~~~~~~f~~~~~~~~~fp~l~  123 (184)
T 3uma_A           54 FKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVND---LHVMGAWATHSGGMGKIHFLS  123 (184)
T ss_dssp             HTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSC---HHHHHHHHHHHTCTTTSEEEE
T ss_pred             hCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCC---HHHHHHHHHHhCCCCceEEEE
Confidence            33444433  45899999987 23333       334566 55555543   234555666555311366554

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=94.06  E-value=0.087  Score=34.01  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=25.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHH-------hhc--CCCceEEEccc
Q 042938           11 KPVVIFSKSECCICFSIQTLI-------CGF--GANPTVYELDQ   45 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L-------~~~--~v~~~~v~vd~   45 (106)
                      ..|+.|+..+||+|.++...+       +.+  ++.+..+++..
T Consensus        16 ~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   59 (189)
T 3l9v_A           16 PAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVSL   59 (189)
T ss_dssp             CSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECSS
T ss_pred             CEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEechh
Confidence            458889999999999887653       222  46777777765

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=94.05  E-value=0.18  Score=33.45  Aligned_cols=36  Identities=17%  Similarity=0.187  Sum_probs=20.1

Q ss_pred             hCCCEEE-EE-cCCCchHH-HHHHHH-------hhcCC-CceEEEcc
Q 042938            9 NEKPVVI-FS-KSECCICF-SIQTLI-------CGFGA-NPTVYELD   44 (106)
Q Consensus         9 ~~~~v~v-f~-~~~Cp~C~-~~~~~L-------~~~~v-~~~~v~vd   44 (106)
                      +.+++++ |+ .+|||.|. .-...|       .+.|+ .+--+.+|
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d   78 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVN   78 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcC
Confidence            3344444 55 89999999 333333       33466 45445444

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=93.85  E-value=0.016  Score=37.49  Aligned_cols=32  Identities=19%  Similarity=0.173  Sum_probs=20.4

Q ss_pred             EEEEE-cCCCchHHHHHHHHhh-------cCCCceEEEcc
Q 042938           13 VVIFS-KSECCICFSIQTLICG-------FGANPTVYELD   44 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd   44 (106)
                      ++.|+ .+|||.|......|.+       .++.+-.+++|
T Consensus        37 vl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d   76 (198)
T 1zof_A           37 ILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSID   76 (198)
T ss_dssp             EEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESS
T ss_pred             EEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence            45577 8999999866555543       34555555555

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=93.73  E-value=0.046  Score=34.07  Aligned_cols=32  Identities=13%  Similarity=0.028  Sum_probs=20.8

Q ss_pred             EEEEEcCC-CchHHHHHHHHhh-----cCCCceEEEcc
Q 042938           13 VVIFSKSE-CCICFSIQTLICG-----FGANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~-Cp~C~~~~~~L~~-----~~v~~~~v~vd   44 (106)
                      ++.|+.+| ||.|......|.+     .++.+-.+.+|
T Consensus        48 vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~vv~is~d   85 (167)
T 2jsy_A           48 IISVIPSIDTGVCDAQTRRFNEEAAKLGDVNVYTISAD   85 (167)
T ss_dssp             EEEECSCSTTSHHHHTHHHHHHHHHHHSSCEEEEEECS
T ss_pred             EEEEecCCCCCchHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            55578888 9999876655543     24555555555

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=93.68  E-value=0.059  Score=34.81  Aligned_cols=36  Identities=14%  Similarity=0.233  Sum_probs=26.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHH----hhcCCCceEEEcccC
Q 042938           11 KPVVIFSKSECCICFSIQTLI----CGFGANPTVYELDQI   46 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~vd~~   46 (106)
                      ..|+.|+..+||||.++...+    +++++.+..+.+.-.
T Consensus        24 ~~vvef~d~~Cp~C~~~~~~~~~~~~~~~v~~~~~p~~~~   63 (185)
T 3feu_A           24 APVTEVFALSCGHCRNMENFLPVISQEAGTDIGKMHITFN   63 (185)
T ss_dssp             CSEEEEECTTCHHHHHHGGGHHHHHHHHTSCCEEEECCSS
T ss_pred             CEEEEEECCCChhHHHhhHHHHHHHHHhCCeEEEEeccCC
Confidence            357889999999999876554    334677777777543

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=93.65  E-value=0.064  Score=34.18  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=21.1

Q ss_pred             EEEEE-cCCCchHHHHHHHHhh-------cCCCceEEEccc
Q 042938           13 VVIFS-KSECCICFSIQTLICG-------FGANPTVYELDQ   45 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~   45 (106)
                      ++.|+ .+|||.|......|.+       .++.+-.+.+|.
T Consensus        35 vl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~   75 (187)
T 1we0_A           35 IVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDT   75 (187)
T ss_dssp             EEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             EEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            55577 8999999866555533       245555555553

>4g0i_A Protein YQJG; glutathionyl-hydroquinone reductase, oxidoreductase; HET: MES; 2.05A {Escherichia coli} PDB: 3r3e_A* 4g0k_A* 4g0l_A*

Probab=93.52  E-value=1.1  Score=31.88  Aligned_cols=28  Identities=7%  Similarity=0.036  Sum_probs=25.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCC
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGAN   37 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~   37 (106)
                      ..+.-+|++..||+|+++.-++.-+|++
T Consensus        52 ~gry~Ly~s~~CPwAhR~~I~~~lkGLe   79 (328)
T 4g0i_A           52 KDRYHLYVSLACPWAHRTLIMRKLKGLE   79 (328)
T ss_dssp             TTSEEEEECSSCHHHHHHHHHHHHTTCT
T ss_pred             CCcEEEEEeCCCcHHHHHHHHHHHhCCC
Confidence            4568899999999999999999999975

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=93.15  E-value=0.48  Score=29.42  Aligned_cols=47  Identities=9%  Similarity=-0.002  Sum_probs=25.6

Q ss_pred             EEEEE-cCCCchHHHHHHHHhhcC--CCceEEEcccCCCchHHHHHHHHhC
Q 042938           13 VVIFS-KSECCICFSIQTLICGFG--ANPTVYELDQIPNGPQIERALQQLG   60 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~~~--v~~~~v~vd~~~~~~~~~~~l~~~~   60 (106)
                      ++.|+ .+|||.|..-...|.+.-  -.+..+-|..+ ....+++++++++
T Consensus        50 vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~vv~is~d-~~~~~~~~~~~~~   99 (166)
T 3p7x_A           50 LISVVPSIDTGVCDQQTRKFNSDASKEEGIVLTISAD-LPFAQKRWCASAG   99 (166)
T ss_dssp             EEEECSCTTSHHHHHHHHHHHHHSCTTTSEEEEEESS-CHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCccHHHHHHHHHHhhcCCCEEEEEECC-CHHHHHHHHHHcC
Confidence            44455 679999987666664432  22444444432 2334555555554

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=93.14  E-value=0.81  Score=28.75  Aligned_cols=49  Identities=14%  Similarity=0.198  Sum_probs=24.8

Q ss_pred             CCEE-EEEcCCCc-hHHHHH-------HHHhhcCCCceEE--EcccCCC-chHHHHHHHHh
Q 042938           11 KPVV-IFSKSECC-ICFSIQ-------TLICGFGANPTVY--ELDQIPN-GPQIERALQQL   59 (106)
Q Consensus        11 ~~v~-vf~~~~Cp-~C~~~~-------~~L~~~~v~~~~v--~vd~~~~-~~~~~~~l~~~   59 (106)
                      +.++ .|+-++|| .|....       +.+.+.+..+..+  .+|...+ .+.++++++.+
T Consensus        33 k~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y~~~~   93 (170)
T 4hde_A           33 KVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAFIQKF   93 (170)
T ss_dssp             SCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTT
T ss_pred             CEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCcccccHHHHHHHHHHc
Confidence            3444 47789998 686433       3334445555554  4443222 23355555443

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=93.12  E-value=0.33  Score=30.47  Aligned_cols=48  Identities=19%  Similarity=0.234  Sum_probs=26.8

Q ss_pred             EEEEEcCCCc-hHHHHHHHHhhc-------CCCceEE--EcccCCCchHHHHHHHHhC
Q 042938           13 VVIFSKSECC-ICFSIQTLICGF-------GANPTVY--ELDQIPNGPQIERALQQLG   60 (106)
Q Consensus        13 v~vf~~~~Cp-~C~~~~~~L~~~-------~v~~~~v--~vd~~~~~~~~~~~l~~~~   60 (106)
                      ++.|+.+||| .|......|.+.       +..+..+  .+|..+..+.+++++++++
T Consensus        32 ll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~   89 (170)
T 3me7_A           32 ILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYG   89 (170)
T ss_dssp             EEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTT
T ss_pred             EEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcC
Confidence            5668899998 598766555432       2345544  4443223334555555543

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=93.03  E-value=0.064  Score=34.78  Aligned_cols=32  Identities=16%  Similarity=0.220  Sum_probs=20.8

Q ss_pred             EEEEE-cCCCchHHHHHHHHhhc-------CCCceEEEcc
Q 042938           13 VVIFS-KSECCICFSIQTLICGF-------GANPTVYELD   44 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd   44 (106)
                      ++.|+ .+|||.|......|.++       ++.+--+.+|
T Consensus        40 vl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D   79 (202)
T 1uul_A           40 VLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMD   79 (202)
T ss_dssp             EEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESS
T ss_pred             EEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            55577 89999999766665443       4444445554

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=92.97  E-value=0.54  Score=30.00  Aligned_cols=61  Identities=8%  Similarity=0.022  Sum_probs=31.0

Q ss_pred             hhhhCCCEEE--EEcCCCchHHH--HHHH------HhhcCCCceE-EEcccCCCchHHHHHHHHhCCCCCccEEE
Q 042938            6 RMVNEKPVVI--FSKSECCICFS--IQTL------ICGFGANPTV-YELDQIPNGPQIERALQQLGCQPTVPAVF   69 (106)
Q Consensus         6 ~~~~~~~v~v--f~~~~Cp~C~~--~~~~------L~~~~v~~~~-v~vd~~~~~~~~~~~l~~~~~~~tvP~if   69 (106)
                      ++.+..++++  |..+|||.|..  +..+      +.+.|+.+-- +..|.   ....++++++.+....+|.+.
T Consensus        39 d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~---~~~~~~f~~~~~~~~~fp~l~  110 (173)
T 3mng_A           39 ELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVND---AFVTGEWGRAHKAEGKVRLLA  110 (173)
T ss_dssp             HHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSC---HHHHHHHHHHTTCTTTCEEEE
T ss_pred             HHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCC---HHHHHHHHHHhCCCCceEEEE
Confidence            3334444544  34899999993  3332      2334565542 44443   233445655554311477543

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=92.96  E-value=0.41  Score=29.82  Aligned_cols=54  Identities=13%  Similarity=0.036  Sum_probs=28.2

Q ss_pred             EEEEE-cCCCchHHHHHHHHhhcCC---CceEEEcccCCCchHHHHHHHHhCCCCCccEE
Q 042938           13 VVIFS-KSECCICFSIQTLICGFGA---NPTVYELDQIPNGPQIERALQQLGCQPTVPAV   68 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~~~v---~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i   68 (106)
                      ++.|+ .+|||.|......|.+..-   .+..+-|..++ .+.+++++++++. ..+|.+
T Consensus        51 vl~f~~~~~C~~C~~~~~~l~~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~-~~~~~l  108 (171)
T 2yzh_A           51 VIITVPSLDTPVCETETKKFNEIMAGMEGVDVTVVSMDL-PFAQKRFCESFNI-QNVTVA  108 (171)
T ss_dssp             EEEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSC-HHHHHHHHHHTTC-CSSEEE
T ss_pred             EEEEECCCCCCchHHHHHHHHHHHHHcCCceEEEEeCCC-HHHHHHHHHHcCC-CCeEEe
Confidence            33455 6899999877766655432   23444343322 2335555555432 145543

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=92.96  E-value=0.061  Score=35.60  Aligned_cols=32  Identities=13%  Similarity=0.136  Sum_probs=20.4

Q ss_pred             EEEEEc-CCCchHHHHHHHHhhc-------CCCceEEEcc
Q 042938           13 VVIFSK-SECCICFSIQTLICGF-------GANPTVYELD   44 (106)
Q Consensus        13 v~vf~~-~~Cp~C~~~~~~L~~~-------~v~~~~v~vd   44 (106)
                      ++.|+. +|||.|......|.++       ++.+-.+.+|
T Consensus        73 ll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D  112 (222)
T 3ztl_A           73 VLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTD  112 (222)
T ss_dssp             EEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESS
T ss_pred             EEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence            455774 9999999776666443       4444445554

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=92.80  E-value=0.28  Score=31.12  Aligned_cols=20  Identities=15%  Similarity=-0.059  Sum_probs=13.3

Q ss_pred             EEEEE-cCCCchHHHHHHHHh
Q 042938           13 VVIFS-KSECCICFSIQTLIC   32 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~   32 (106)
                      |++|+ .+|||.|......|.
T Consensus        55 vl~f~~~~~c~~C~~el~~l~   75 (179)
T 3ixr_A           55 VLYFYPKDNTPGSSTEGLEFN   75 (179)
T ss_dssp             EEEECSCTTSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCchHHHHHHHH
Confidence            44455 789999986554443

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=92.70  E-value=0.22  Score=33.00  Aligned_cols=13  Identities=8%  Similarity=0.227  Sum_probs=11.2

Q ss_pred             EEEEEcCCCchHH
Q 042938           13 VVIFSKSECCICF   25 (106)
Q Consensus        13 v~vf~~~~Cp~C~   25 (106)
                      ++.|+.+|||+|.
T Consensus        60 ll~FwAt~C~~c~   72 (215)
T 2i3y_A           60 LFVNVATYCGLTA   72 (215)
T ss_dssp             EEEEECSSSGGGG
T ss_pred             EEEEeCCCCCChH
Confidence            4668999999997

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=92.66  E-value=0.56  Score=32.76  Aligned_cols=54  Identities=15%  Similarity=0.110  Sum_probs=31.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC----CCceEEEcccCC-CchHHHHHHHHhCCC-CCccEEE
Q 042938           13 VVIFSKSECCICFSIQTLICGFG----ANPTVYELDQIP-NGPQIERALQQLGCQ-PTVPAVF   69 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~v~vd~~~-~~~~~~~~l~~~~~~-~tvP~if   69 (106)
                      +++|+.++|+.|.+....|.+..    -.+..+-+|.+. +..   ..+..++.. ..+|++.
T Consensus       139 ~v~F~~~~~~~~~~~~~~~~~~A~~~~~~i~f~~vd~~~~~~~---~~~~~fgi~~~~~P~~~  198 (361)
T 3uem_A          139 ILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQ---RILEFFGLKKEECPAVR  198 (361)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHHHGGGTTTCEEEEECTTSGGGH---HHHHHTTCCTTTCSEEE
T ss_pred             EEEEEeCCchhHHHHHHHHHHHHHHccCceEEEEecCChHHHH---HHHHHcCCCccCCccEE
Confidence            57799999999998888776542    223344444432 122   244444542 2389874

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=92.60  E-value=0.56  Score=31.94  Aligned_cols=62  Identities=11%  Similarity=0.067  Sum_probs=32.2

Q ss_pred             HHhhhhCCC--EEEEE--cCCCchHHHHHHHHhhc-----CCCceEEEccc--CCCchHHHHHHHHhCCCC--CccEEE
Q 042938            4 VTRMVNEKP--VVIFS--KSECCICFSIQTLICGF-----GANPTVYELDQ--IPNGPQIERALQQLGCQP--TVPAVF   69 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~--~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~--~~~~~~~~~~l~~~~~~~--tvP~if   69 (106)
                      +.+.+...+  ++.|+  .|||+.-.....+-.++     .+.+-.+|++.  .++..+   ...+++. .  ++|+++
T Consensus        26 F~~vi~~~~~vlV~Fy~~ApWCgl~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~---la~~~~V-~~~~~PTl~  100 (248)
T 2c0g_A           26 FEKTVERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKA---LGDRYKV-DDKNFPSIF  100 (248)
T ss_dssp             HHHHHTTSSEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHH---HHHHTTC-CTTSCCEEE
T ss_pred             HHHHHhcCCCEEEEEECCCCCCccHHHHHHHHHHHhccCCCeEEEEEECCcccccccHH---HHHHhCC-CcCCCCeEE
Confidence            445555544  45588  89998333223333332     34556667665  122233   3334444 6  899874

>4fqu_A Putative glutathione transferase; glutathionyl-hydroquinone reductases, oxidoredu; 3.00A {Sphingobium chlorophenolicum}

Probab=92.56  E-value=0.69  Score=32.68  Aligned_cols=28  Identities=7%  Similarity=0.082  Sum_probs=24.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCC
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGAN   37 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~   37 (106)
                      ..+.-+|++..||+|+++.-++.-+|++
T Consensus        42 ~gRy~Ly~s~~CPwAhR~~I~r~lKGLe   69 (313)
T 4fqu_A           42 PGRYHLYAGFACPWAHRVLIMRALKGLE   69 (313)
T ss_dssp             TTTEEEEECSSCHHHHHHHHHHHHTTCT
T ss_pred             CCcEEEEEecCCcHHHHHHHHHHHcCCC
Confidence            4578999999999999999999999964

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=92.50  E-value=0.15  Score=33.90  Aligned_cols=16  Identities=6%  Similarity=0.033  Sum_probs=11.1

Q ss_pred             EEcCCCchHHHHHHHH
Q 042938           16 FSKSECCICFSIQTLI   31 (106)
Q Consensus        16 f~~~~Cp~C~~~~~~L   31 (106)
                      |..++||.|..-...|
T Consensus        39 ~~a~~cp~C~~el~~l   54 (224)
T 1prx_A           39 HPRDFTPVCTTELGRA   54 (224)
T ss_dssp             ESCSSCHHHHHHHHHH
T ss_pred             ECCCCCCCcHHHHHHH
Confidence            3578999998554444

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=92.38  E-value=0.19  Score=33.04  Aligned_cols=21  Identities=14%  Similarity=0.102  Sum_probs=15.5

Q ss_pred             EEEEE-cCCCchHHHHHHHHhh
Q 042938           13 VVIFS-KSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~   33 (106)
                      |+.|+ .+|||.|......|.+
T Consensus        56 vl~F~pa~~C~~C~~~~~~l~~   77 (213)
T 2i81_A           56 LLYFYPLDFTFVCPSEIIALDK   77 (213)
T ss_dssp             EEEECSCTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCCCHHHHHHHHH
Confidence            45577 8999999877666544

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=92.34  E-value=0.044  Score=36.28  Aligned_cols=32  Identities=13%  Similarity=0.183  Sum_probs=20.3

Q ss_pred             EEEEE-cCCCchHHHHHHHHhh-------cCCCceEEEcc
Q 042938           13 VVIFS-KSECCICFSIQTLICG-------FGANPTVYELD   44 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd   44 (106)
                      ++.|+ .+|||+|......|.+       .++.+--+.+|
T Consensus        60 ll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D   99 (220)
T 1zye_A           60 VLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVD   99 (220)
T ss_dssp             EEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESS
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence            45577 8999999866555533       34555455554

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=92.13  E-value=0.35  Score=30.86  Aligned_cols=22  Identities=9%  Similarity=-0.094  Sum_probs=13.8

Q ss_pred             CEEE-EE-cCCCchHHHHHHHHhh
Q 042938           12 PVVI-FS-KSECCICFSIQTLICG   33 (106)
Q Consensus        12 ~v~v-f~-~~~Cp~C~~~~~~L~~   33 (106)
                      .++| |+ .+|||.|..-...|.+
T Consensus        32 ~vvl~F~~~~~Cp~C~~e~~~l~~   55 (186)
T 1n8j_A           32 WSVFFFYPADFTFVSPTELGDVAD   55 (186)
T ss_dssp             EEEEEECSCTTCSHHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCccHHHHHHHHH
Confidence            4444 55 4899999865554433

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=92.05  E-value=0.44  Score=29.27  Aligned_cols=20  Identities=15%  Similarity=0.007  Sum_probs=13.6

Q ss_pred             EEEE-E-cCCCchHHHHHHHHh
Q 042938           13 VVIF-S-KSECCICFSIQTLIC   32 (106)
Q Consensus        13 v~vf-~-~~~Cp~C~~~~~~L~   32 (106)
                      +++| + .+|||.|......|.
T Consensus        38 vvl~f~~~~~c~~C~~~~~~l~   59 (159)
T 2a4v_A           38 VVFFVYPRASTPGSTRQASGFR   59 (159)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCCCHHHHHHHHH
Confidence            5554 3 799999986655443

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=91.67  E-value=0.75  Score=28.40  Aligned_cols=46  Identities=15%  Similarity=-0.010  Sum_probs=24.1

Q ss_pred             EEEE-cCCCchHHHHHHHHhhcCC---CceEEEcccCCCchHHHHHHHHhC
Q 042938           14 VIFS-KSECCICFSIQTLICGFGA---NPTVYELDQIPNGPQIERALQQLG   60 (106)
Q Consensus        14 ~vf~-~~~Cp~C~~~~~~L~~~~v---~~~~v~vd~~~~~~~~~~~l~~~~   60 (106)
                      +.|+ .+|||.|......|.+..-   .+..+-|..++ ...+++++++++
T Consensus        47 l~F~~~~~c~~C~~~~~~l~~~~~~~~~v~vv~is~d~-~~~~~~~~~~~~   96 (163)
T 1psq_A           47 LSVVPSIDTGICSTQTRRFNEELAGLDNTVVLTVSMDL-PFAQKRWCGAEG   96 (163)
T ss_dssp             EEECSCTTSHHHHHHHHHHHHHTTTCTTEEEEEEESSC-HHHHHHHHHHHT
T ss_pred             EEEECCCCCCccHHHHHHHHHHHHHcCCcEEEEEECCC-HHHHHHHHHhcC
Confidence            3455 4899999877666655432   23344333322 233444555443

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=91.66  E-value=0.39  Score=31.53  Aligned_cols=14  Identities=7%  Similarity=-0.156  Sum_probs=11.3

Q ss_pred             EEEEEcCCCchHHH
Q 042938           13 VVIFSKSECCICFS   26 (106)
Q Consensus        13 v~vf~~~~Cp~C~~   26 (106)
                      ++.|+.+|||.|..
T Consensus        42 ll~F~At~C~~c~e   55 (207)
T 2r37_A           42 LFVNVASYGGLTGQ   55 (207)
T ss_dssp             EEEEECSSSTTTTH
T ss_pred             EEEEeCCCCCChHH
Confidence            46689999999943

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=91.57  E-value=0.13  Score=32.29  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=16.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      |+.|+.-.||||.+....+.+
T Consensus        25 vvEf~dy~Cp~C~~~~~~~~~   45 (184)
T 4dvc_A           25 VSEFFSFYCPHCNTFEPIIAQ   45 (184)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEECCCCHhHHHHhHHHHH
Confidence            677999999999987665533

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=91.51  E-value=0.29  Score=31.72  Aligned_cols=35  Identities=20%  Similarity=0.386  Sum_probs=25.5

Q ss_pred             CCEEEEEcCCCchHHHHHHH-------Hhhc--CCCceEEEccc
Q 042938           11 KPVVIFSKSECCICFSIQTL-------ICGF--GANPTVYELDQ   45 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~-------L~~~--~v~~~~v~vd~   45 (106)
                      ..|+.|+..+||+|.++...       .+++  ++.+..+.+.-
T Consensus        23 ~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~~   66 (191)
T 3l9s_A           23 PQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEF   66 (191)
T ss_dssp             SCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECSS
T ss_pred             CeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEeccc
Confidence            46888999999999988654       3444  46777776654

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=91.25  E-value=0.11  Score=34.25  Aligned_cols=21  Identities=14%  Similarity=0.126  Sum_probs=15.1

Q ss_pred             EEEEE-cCCCchHHHHHHHHhh
Q 042938           13 VVIFS-KSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~   33 (106)
                      |+.|+ .+|||.|......|.+
T Consensus        52 vl~F~pat~C~~C~~e~~~l~~   73 (211)
T 2pn8_A           52 VFFFYPLDFTFVCPTEIIAFGD   73 (211)
T ss_dssp             EEEECSCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCCHHHHHHHHH
Confidence            45567 8999999866655544

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=91.14  E-value=0.14  Score=32.59  Aligned_cols=20  Identities=20%  Similarity=0.560  Sum_probs=16.8

Q ss_pred             CEEEEEcCCCchHHHHHHHH
Q 042938           12 PVVIFSKSECCICFSIQTLI   31 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L   31 (106)
                      .|++|+...||||.++...+
T Consensus        14 ~i~~f~D~~Cp~C~~~~~~l   33 (186)
T 3bci_A           14 LVVVYGDYKCPYCKELDEKV   33 (186)
T ss_dssp             EEEEEECTTCHHHHHHHHHH
T ss_pred             EEEEEECCCChhHHHHHHHH
Confidence            58889999999999886654

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=90.78  E-value=0.16  Score=31.85  Aligned_cols=15  Identities=33%  Similarity=0.512  Sum_probs=12.8

Q ss_pred             CCCCccEEEECCeEe
Q 042938           61 CQPTVPAVFIGQRLV   75 (106)
Q Consensus        61 ~~~tvP~ifv~g~~i   75 (106)
                      +...+|++||||+++
T Consensus       147 gv~gTPtfiINGky~  161 (184)
T 4dvc_A          147 GLTGVPAVVVNNRYL  161 (184)
T ss_dssp             TCCSSSEEEETTTEE
T ss_pred             CCCcCCEEEECCEEe
Confidence            358999999999875

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=90.70  E-value=0.12  Score=34.39  Aligned_cols=21  Identities=10%  Similarity=0.112  Sum_probs=15.2

Q ss_pred             EEEEE-cCCCchHHHHHHHHhh
Q 042938           13 VVIFS-KSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~   33 (106)
                      |+.|+ .+|||.|......|.+
T Consensus        60 vl~F~patwCp~C~~e~p~l~~   81 (221)
T 2c0d_A           60 CLLFYPLNYTFVCPTEIIEFNK   81 (221)
T ss_dssp             EEEECCCCTTTCCHHHHHHHHH
T ss_pred             EEEEEcCCCCCchHHHHHHHHH
Confidence            45577 8999999876655544

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=90.56  E-value=0.35  Score=32.49  Aligned_cols=33  Identities=15%  Similarity=0.039  Sum_probs=19.2

Q ss_pred             CEEEEE--cCCCchHHHHHHHHhh-------cCCCceEEEcc
Q 042938           12 PVVIFS--KSECCICFSIQTLICG-------FGANPTVYELD   44 (106)
Q Consensus        12 ~v~vf~--~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd   44 (106)
                      .+++|.  .++||.|..-...|.+       .|+.+--+.+|
T Consensus        31 ~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D   72 (233)
T 2v2g_A           31 WGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCD   72 (233)
T ss_dssp             EEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESS
T ss_pred             eEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence            455554  6899999865544433       35544444444

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=90.36  E-value=0.19  Score=34.27  Aligned_cols=30  Identities=10%  Similarity=0.130  Sum_probs=19.8

Q ss_pred             EEcCCCchHHHHHHHHhh-------cCCCceEEEccc
Q 042938           16 FSKSECCICFSIQTLICG-------FGANPTVYELDQ   45 (106)
Q Consensus        16 f~~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd~   45 (106)
                      |..++||.|..-...|.+       .|+.+--+.+|.
T Consensus        41 fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds   77 (249)
T 3a2v_A           41 HPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDS   77 (249)
T ss_dssp             CSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSC
T ss_pred             EcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCC
Confidence            578999999866655543       355555555554

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=90.01  E-value=0.21  Score=33.10  Aligned_cols=20  Identities=10%  Similarity=0.258  Sum_probs=13.6

Q ss_pred             EEEE--EcCCCchHHHHHHHHh
Q 042938           13 VVIF--SKSECCICFSIQTLIC   32 (106)
Q Consensus        13 v~vf--~~~~Cp~C~~~~~~L~   32 (106)
                      +++|  ..++||.|..-...|.
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~   55 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELG   55 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCCCHHHHHHHH
Confidence            5554  5789999986554443

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=89.90  E-value=0.2  Score=33.68  Aligned_cols=20  Identities=15%  Similarity=0.190  Sum_probs=13.5

Q ss_pred             EEEEEc-CCCchHHHHHHHHh
Q 042938           13 VVIFSK-SECCICFSIQTLIC   32 (106)
Q Consensus        13 v~vf~~-~~Cp~C~~~~~~L~   32 (106)
                      ++.|+. +|||.|......|.
T Consensus        81 vL~F~~~~~cp~C~~el~~l~  101 (240)
T 3qpm_A           81 VFFFYPLDFTFVCPTEIIAFS  101 (240)
T ss_dssp             EEEECSCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCchHHHHHHHH
Confidence            445666 99999986554443

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=89.36  E-value=0.9  Score=29.28  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             CCCCccEEEECCeEeecchHHHhHH
Q 042938           61 CQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        61 ~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      +...+|+++|||+.+.|.+.+..+.
T Consensus       164 Gv~G~Ptfvi~g~~~~G~~~~~~l~  188 (203)
T 2imf_A          164 KVFGVPTMFLGDEMWWGNDRLFMLE  188 (203)
T ss_dssp             TCCSSSEEEETTEEEESGGGHHHHH
T ss_pred             CCCcCCEEEECCEEEECCCCHHHHH
Confidence            4489999999999999998776553

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=89.06  E-value=0.19  Score=32.46  Aligned_cols=31  Identities=10%  Similarity=0.189  Sum_probs=20.9

Q ss_pred             EEEEEcCCCchHHHH----HHHHhhc---CCCceEEEc
Q 042938           13 VVIFSKSECCICFSI----QTLICGF---GANPTVYEL   43 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~----~~~L~~~---~v~~~~v~v   43 (106)
                      |++|+-..||||.++    ...+++.   .+.+..++.
T Consensus        18 iv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~   55 (182)
T 3gn3_A           18 FEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQ   55 (182)
T ss_dssp             EEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEEC
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEc
Confidence            677999999999976    3455554   245555543

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=88.60  E-value=0.56  Score=29.70  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=17.4

Q ss_pred             CCCCCccEEEECCeEeecchHH
Q 042938           60 GCQPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus        60 ~~~~tvP~ifv~g~~iGg~~~~   81 (106)
                      .+...+|+++|||+.+.|..+.
T Consensus       145 ~gv~GtPt~vvnG~~~~G~~~~  166 (186)
T 3bci_A          145 NHIKTTPTAFINGEKVEDPYDY  166 (186)
T ss_dssp             TTCCSSSEEEETTEECSCTTCH
T ss_pred             cCCCCCCeEEECCEEcCCCCCH
Confidence            3458999999999998876443

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=88.14  E-value=0.46  Score=29.44  Aligned_cols=21  Identities=24%  Similarity=0.230  Sum_probs=9.7

Q ss_pred             CCEE-EEE-cCCCchHHHHHHHH
Q 042938           11 KPVV-IFS-KSECCICFSIQTLI   31 (106)
Q Consensus        11 ~~v~-vf~-~~~Cp~C~~~~~~L   31 (106)
                      ..++ .|+ .+|||.|..-..-|
T Consensus        31 k~vvl~f~~~~~c~~C~~e~~~l   53 (157)
T 4g2e_A           31 KVVVLAFYPAAFTQVCTKEMCTF   53 (157)
T ss_dssp             SCEEEEECSCTTCCC------CC
T ss_pred             CeEEEEecCCCCCCccccchhhc
Confidence            3444 455 78999998654444

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=87.82  E-value=0.41  Score=31.47  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=17.8

Q ss_pred             CCCCccEEEECCeEeecchHHHhH
Q 042938           61 CQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        61 ~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +...+|+++|||+.+-|..+...+
T Consensus       165 GV~GtPtfvvng~~~~G~~~~e~l  188 (205)
T 3gmf_A          165 NVSGTPSFMIDGILLAGTHDWASL  188 (205)
T ss_dssp             CCCSSSEEEETTEECTTCCSHHHH
T ss_pred             CCccCCEEEECCEEEeCCCCHHHH
Confidence            348899999999998876544433

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=87.79  E-value=0.35  Score=31.29  Aligned_cols=24  Identities=13%  Similarity=0.386  Sum_probs=18.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhh
Q 042938           10 EKPVVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ...|++|+-..||||.....++.+
T Consensus         7 ~~~I~~f~D~~CP~C~~~~~~~~~   30 (216)
T 2in3_A            7 KPVLWYIADPMCSWCWGFAPVIEN   30 (216)
T ss_dssp             CCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             ceeEEEEECCCCchhhcchHHHHH
Confidence            346889999999999977665544

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=87.41  E-value=0.081  Score=33.38  Aligned_cols=22  Identities=18%  Similarity=0.458  Sum_probs=13.3

Q ss_pred             HhhhhC-CCEEE-EE-cCCCchHHH
Q 042938            5 TRMVNE-KPVVI-FS-KSECCICFS   26 (106)
Q Consensus         5 ~~~~~~-~~v~v-f~-~~~Cp~C~~   26 (106)
                      ++.... .++++ |+ .+|||.|..
T Consensus        27 sd~~~~Gk~vvl~f~~~~~cp~C~~   51 (164)
T 4gqc_A           27 YEVLKRGRPAVLIFFPAAFSPVCTK   51 (164)
T ss_dssp             HHHHHTSSCEEEEECSCTTCCEECS
T ss_pred             HHHhcCCCEEEEEEeCCCCCCCccc
Confidence            344433 34544 44 799999973

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=87.17  E-value=0.9  Score=29.55  Aligned_cols=21  Identities=5%  Similarity=0.321  Sum_probs=16.5

Q ss_pred             CCCCccEEEECCeEeecchHH
Q 042938           61 CQPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus        61 ~~~tvP~ifv~g~~iGg~~~~   81 (106)
                      +...+|+++|||+++-|..+.
T Consensus       160 gV~gtPtfvvnG~~~~G~~~~  180 (202)
T 3gha_A          160 NIQATPTIYVNDKVIKNFADY  180 (202)
T ss_dssp             TCCSSCEEEETTEECSCTTCH
T ss_pred             CCCcCCEEEECCEEecCCCCH
Confidence            347899999999998775443

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=86.74  E-value=0.37  Score=31.45  Aligned_cols=33  Identities=21%  Similarity=0.282  Sum_probs=22.8

Q ss_pred             EEEEEcCCCchHHHHHHH----Hh-hc----CCCceEEEccc
Q 042938           13 VVIFSKSECCICFSIQTL----IC-GF----GANPTVYELDQ   45 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~----L~-~~----~v~~~~v~vd~   45 (106)
                      |+.|+...||+|.++...    |. .+    .+.+..+++.-
T Consensus        33 vvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p~   74 (202)
T 3gha_A           33 VVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMF   74 (202)
T ss_dssp             EEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECCC
T ss_pred             EEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecCc
Confidence            678999999999987433    33 33    45677666654

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=86.65  E-value=0.2  Score=34.13  Aligned_cols=20  Identities=15%  Similarity=0.130  Sum_probs=13.3

Q ss_pred             EEEEE-cCCCchHHHHHHHHh
Q 042938           13 VVIFS-KSECCICFSIQTLIC   32 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~   32 (106)
                      |++|+ .+|||.|..-...|.
T Consensus        95 vL~F~~a~~cp~C~~el~~l~  115 (254)
T 3tjj_A           95 VFFFYPLDFTFVCPTEIIAFG  115 (254)
T ss_dssp             EEEECSCTTCSSCCHHHHHHH
T ss_pred             EEEEECCCCCCchHHHHHHHH
Confidence            44565 789999976554443

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=86.53  E-value=0.3  Score=31.15  Aligned_cols=32  Identities=13%  Similarity=0.042  Sum_probs=20.3

Q ss_pred             EEEEE-cCCCchHHHHHHHHhh-------cCCCceEEEcc
Q 042938           13 VVIFS-KSECCICFSIQTLICG-------FGANPTVYELD   44 (106)
Q Consensus        13 v~vf~-~~~Cp~C~~~~~~L~~-------~~v~~~~v~vd   44 (106)
                      |+.|+ .+|||.|......|.+       .++.+-.+.+|
T Consensus        35 vl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d   74 (192)
T 2h01_A           35 LLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVD   74 (192)
T ss_dssp             EEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESS
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence            45577 8999999866655543       34554445554

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=86.40  E-value=0.4  Score=30.36  Aligned_cols=33  Identities=12%  Similarity=0.319  Sum_probs=21.0

Q ss_pred             EEEEEcCCCchHHHHHHHH-h----hcC--CCceEEEccc
Q 042938           13 VVIFSKSECCICFSIQTLI-C----GFG--ANPTVYELDQ   45 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L-~----~~~--v~~~~v~vd~   45 (106)
                      ++.|+...||||..+...+ .    +++  +.+..+.+..
T Consensus        21 ~ief~d~~CP~C~~~~~~l~~~l~~~~~~~v~~~~~~l~~   60 (195)
T 3c7m_A           21 LIKVFSYACPFCYKYDKAVTGPVSEKVKDIVAFTPFHLET   60 (195)
T ss_dssp             EEEEECTTCHHHHHHHHHTHHHHHHHTTTTCEEEEEECTT
T ss_pred             EEEEEeCcCcchhhCcHHHHHHHHHhCCCceEEEEEecCc
Confidence            4557779999998776655 3    333  4455555443

>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}

Probab=85.13  E-value=2.5  Score=27.00  Aligned_cols=69  Identities=16%  Similarity=0.166  Sum_probs=49.9

Q ss_pred             EcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh-------------------CCCCCccEE--EECCeEe
Q 042938           17 SKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL-------------------GCQPTVPAV--FIGQRLV   75 (106)
Q Consensus        17 ~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~-------------------~~~~tvP~i--fv~g~~i   75 (106)
                      +.+.=|.+.++...|+++|++|+..-+..+-..+.+.++.+..                   .+..+.|+|  -+ +...
T Consensus         8 s~SD~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpgvva~~t~~PVIgVP~-~~~l   86 (157)
T 2ywx_A            8 SESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPGVVASLTTKPVIAVPV-DAKL   86 (157)
T ss_dssp             SGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHHHHHTTCSSCEEEEEE-CSSG
T ss_pred             cHHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHHHHHhccCCCEEEecC-CCcc
Confidence            4566789999999999999998877777777766776665522                   122566665  34 5577


Q ss_pred             ecchHHHhHHH
Q 042938           76 GGPNQVMSLHV   86 (106)
Q Consensus        76 Gg~~~~~~~~~   86 (106)
                      +|.|.+.++..
T Consensus        87 ~G~daLlS~vq   97 (157)
T 2ywx_A           87 DGLDALLSSVQ   97 (157)
T ss_dssp             GGHHHHHHHHS
T ss_pred             CcHHHHHHHhc
Confidence            88888877765

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=84.75  E-value=1.9  Score=28.35  Aligned_cols=66  Identities=8%  Similarity=0.085  Sum_probs=46.5

Q ss_pred             chHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCchHHHHhc
Q 042938           22 CICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRA   97 (106)
Q Consensus        22 p~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L~~~L~~~   97 (106)
                      .+-..+++.|+++|++...+++.. .+.++..+.+..      .-.||+.|   |.+..+.+..++..|.+.|+++
T Consensus        44 ~~~~s~~~a~~~lG~~v~~~~i~~-~~~~~~~~~l~~------ad~I~l~G---G~~~~l~~~L~~~gl~~~l~~~  109 (206)
T 3l4e_A           44 FYVEAGKKALESLGLLVEELDIAT-ESLGEITTKLRK------NDFIYVTG---GNTFFLLQELKRTGADKLILEE  109 (206)
T ss_dssp             HHHHHHHHHHHHTTCEEEECCTTT-SCHHHHHHHHHH------SSEEEECC---SCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCeEEEEEecC-CChHHHHHHHHh------CCEEEECC---CCHHHHHHHHHHCChHHHHHHH
Confidence            478899999999999777666655 233333344432      33688888   7788888877777788888774

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=84.36  E-value=0.46  Score=29.86  Aligned_cols=32  Identities=16%  Similarity=0.069  Sum_probs=20.5

Q ss_pred             EEEEEcCC-CchHHHHHHHHhh----cCCCceEEEcc
Q 042938           13 VVIFSKSE-CCICFSIQTLICG----FGANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~-Cp~C~~~~~~L~~----~~v~~~~v~vd   44 (106)
                      ++.|+.+| ||.|......|.+    .++.+-.+++|
T Consensus        48 vl~F~~t~~C~~C~~~~~~l~~l~~~~~v~vv~Is~D   84 (175)
T 1xvq_A           48 LLNIFPSVDTPVCATSVRTFDERAAASGATVLCVSKD   84 (175)
T ss_dssp             EEEECSCCCSSCCCHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHhhcCCEEEEEECC
Confidence            45577787 9999866655543    35555555554

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=84.28  E-value=0.61  Score=31.09  Aligned_cols=17  Identities=12%  Similarity=0.462  Sum_probs=14.6

Q ss_pred             EEEEEcCCCchHHHHHH
Q 042938           13 VVIFSKSECCICFSIQT   29 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~   29 (106)
                      |+.|+...||||.++..
T Consensus        43 Ivef~Dy~CP~C~~~~~   59 (226)
T 3f4s_A           43 MIEYASLTCYHCSLFHR   59 (226)
T ss_dssp             EEEEECTTCHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHH
Confidence            67799999999998764

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=84.08  E-value=2.2  Score=27.53  Aligned_cols=24  Identities=8%  Similarity=0.033  Sum_probs=19.8

Q ss_pred             CCCCccEEEECCeEeecchHHHhH
Q 042938           61 CQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        61 ~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +...+|+++|||+.+-|.+.+..+
T Consensus       170 Gv~GvPtfvv~g~~~~G~~~~~~l  193 (202)
T 3fz5_A          170 GIFGSPFFLVDDEPFWGWDRMEMM  193 (202)
T ss_dssp             TCCSSSEEEETTEEEESGGGHHHH
T ss_pred             CCCcCCEEEECCEEEecCCCHHHH
Confidence            458899999999999998876543

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=83.99  E-value=1.2  Score=29.17  Aligned_cols=31  Identities=19%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             EEEEEcCCCchHHHHH----HHHh-hc----CCCceEEEc
Q 042938           13 VVIFSKSECCICFSIQ----TLIC-GF----GANPTVYEL   43 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~----~~L~-~~----~v~~~~v~v   43 (106)
                      |+.|+-..||||.++.    ..|. ++    .+.+.+.++
T Consensus        19 ivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~   58 (205)
T 3gmf_A           19 LVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNF   58 (205)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeC
Confidence            6779999999999765    4555 33    244555554

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=83.90  E-value=4.5  Score=27.04  Aligned_cols=25  Identities=8%  Similarity=-0.208  Sum_probs=14.6

Q ss_pred             CCCEE-EEEcCC-CchHH-----HHHHHHhhc
Q 042938           10 EKPVV-IFSKSE-CCICF-----SIQTLICGF   34 (106)
Q Consensus        10 ~~~v~-vf~~~~-Cp~C~-----~~~~~L~~~   34 (106)
                      ..+++ .|+.++ ||.|.     .-..-|.+.
T Consensus        48 Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~   79 (224)
T 3keb_A           48 HTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS   79 (224)
T ss_dssp             TCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT
T ss_pred             CCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH
Confidence            34444 455555 99998     554555443

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=83.34  E-value=1.7  Score=28.06  Aligned_cols=23  Identities=30%  Similarity=0.312  Sum_probs=15.0

Q ss_pred             HHhhhhCCCEEE--EEcCCCchHHH
Q 042938            4 VTRMVNEKPVVI--FSKSECCICFS   26 (106)
Q Consensus         4 ~~~~~~~~~v~v--f~~~~Cp~C~~   26 (106)
                      +.++++.+++++  |-..+||.|..
T Consensus        41 Lsd~~~Gk~vVL~fyP~~~tp~Ct~   65 (176)
T 4f82_A           41 VRDQVAGKRVVIFGLPGAFTPTCSA   65 (176)
T ss_dssp             HHHHHTTCEEEEEEESCTTCHHHHH
T ss_pred             HHHHhCCCeEEEEEEcCCCCCCCCH
Confidence            344445555654  56788999976

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=82.51  E-value=0.51  Score=29.31  Aligned_cols=21  Identities=14%  Similarity=0.203  Sum_probs=13.2

Q ss_pred             CCEEE-EE-cCCCchHHHHHHHH
Q 042938           11 KPVVI-FS-KSECCICFSIQTLI   31 (106)
Q Consensus        11 ~~v~v-f~-~~~Cp~C~~~~~~L   31 (106)
                      +++++ |+ .+|||.|..-...|
T Consensus        44 k~vvl~f~~~~~c~~C~~e~~~l   66 (165)
T 1q98_A           44 KRKVLNIFPSIDTGVCATSVRKF   66 (165)
T ss_dssp             SEEEEEECSCSCSSCCCHHHHHH
T ss_pred             CeEEEEEECCCCCCccHHHHHHH
Confidence            34444 55 68999997554444

>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*

Probab=82.47  E-value=1.9  Score=27.62  Aligned_cols=73  Identities=14%  Similarity=0.098  Sum_probs=48.9

Q ss_pred             EEEE--EcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC-----------------------CCCccE
Q 042938           13 VVIF--SKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC-----------------------QPTVPA   67 (106)
Q Consensus        13 v~vf--~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~-----------------------~~tvP~   67 (106)
                      |.|.  +.+.=|.+.++...|+++|++|+..-+..+-..+.+.++.+....                       ..+.|+
T Consensus         5 V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~t~~PV   84 (159)
T 3rg8_A            5 VIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFVKGAT   84 (159)
T ss_dssp             EEEEESSGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHHSSSCE
T ss_pred             EEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhccCCCE
Confidence            4444  345678999999999999999987766777666666666654311                       145666


Q ss_pred             EE--ECCeEeecchHHHhHHH
Q 042938           68 VF--IGQRLVGGPNQVMSLHV   86 (106)
Q Consensus        68 if--v~g~~iGg~~~~~~~~~   86 (106)
                      |=  +.+...+|.| +.++..
T Consensus        85 IgVP~~~~~l~G~d-LlS~vq  104 (159)
T 3rg8_A           85 IACPPPSDSFAGAD-IYSSLR  104 (159)
T ss_dssp             EECCCCCCGGGGTH-HHHHHC
T ss_pred             EEeeCCCCCCCCcc-HHHHHh
Confidence            53  3455667777 766543

>2imf_A HCCA isomerase, 2-hydroxychromene-2-carboxylate isomerase; glutathione, KGST, kappa GST, transferase; HET: GSH TOM CXS; 1.30A {Pseudomonas putida} PDB: 2ime_A* 2imd_A*

Probab=82.03  E-value=0.86  Score=29.38  Aligned_cols=32  Identities=6%  Similarity=0.043  Sum_probs=23.0

Q ss_pred             CEEEEEcCCCchHHHHHHHH----hhcCCCceEEEc
Q 042938           12 PVVIFSKSECCICFSIQTLI----CGFGANPTVYEL   43 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~v~v   43 (106)
                      +|.+|+-..||||-.+...|    .+.++++....+
T Consensus         2 ~I~~~~D~~CP~cy~~~~~l~~~~~~~~~~v~~~p~   37 (203)
T 2imf_A            2 IVDFYFDFLSPFSYLANQRLSKLAQDYGLTIRYNAI   37 (203)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHHCCEEEEEEC
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence            47899999999998776555    445766555543

>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}

Probab=81.69  E-value=3.9  Score=26.25  Aligned_cols=75  Identities=12%  Similarity=0.076  Sum_probs=50.5

Q ss_pred             CCEEEEE--cCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC----------------------CCCcc
Q 042938           11 KPVVIFS--KSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC----------------------QPTVP   66 (106)
Q Consensus        11 ~~v~vf~--~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~----------------------~~tvP   66 (106)
                      .+|.|..  .+.=|.+.++...|+++|++|+..-+..+-..+.+.++.+....                      ..+.|
T Consensus         4 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~P   83 (163)
T 3ors_A            4 MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLP   83 (163)
T ss_dssp             CCEEEEESCGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSSC
T ss_pred             CeEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCCC
Confidence            3455554  45578999999999999999987777777776777777654321                      14566


Q ss_pred             EE--EECCeEeecchHHHhHH
Q 042938           67 AV--FIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        67 ~i--fv~g~~iGg~~~~~~~~   85 (106)
                      +|  -+.....+|.|.+.++.
T Consensus        84 VIgVP~~~~~l~G~dsLlS~v  104 (163)
T 3ors_A           84 VIGVPIETKSLKGIDSLLSIV  104 (163)
T ss_dssp             EEEEEECCTTTTTHHHHHHHH
T ss_pred             EEEeeCCCCCCCCHHHHHHHh
Confidence            65  23444567777776654

>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*

Probab=81.43  E-value=3.8  Score=26.56  Aligned_cols=75  Identities=12%  Similarity=0.107  Sum_probs=52.4

Q ss_pred             CEEEEE--cCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC----------------------CCCccE
Q 042938           12 PVVIFS--KSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC----------------------QPTVPA   67 (106)
Q Consensus        12 ~v~vf~--~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~----------------------~~tvP~   67 (106)
                      +|.|..  .+.=|.+.++...|+++|++|+..-+..+-..+.+.++.+....                      ..+.|+
T Consensus        14 ~V~IimGS~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PV   93 (174)
T 3kuu_A           14 KIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKTLVPV   93 (174)
T ss_dssp             CEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTCSSCE
T ss_pred             cEEEEECcHHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhccCCCE
Confidence            355554  35578999999999999999987767777776777777654311                      156777


Q ss_pred             E--EECCeEeecchHHHhHHH
Q 042938           68 V--FIGQRLVGGPNQVMSLHV   86 (106)
Q Consensus        68 i--fv~g~~iGg~~~~~~~~~   86 (106)
                      |  -+.+...+|.|.+.++..
T Consensus        94 IgVP~~~~~l~G~dsLlS~vq  114 (174)
T 3kuu_A           94 LGVPVQSAALSGVDSLYSIVQ  114 (174)
T ss_dssp             EEEEECCTTTTTHHHHHHHHT
T ss_pred             EEeeCCCCCCCCHHHHHHhhh
Confidence            5  355556778888777654

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=81.12  E-value=2.2  Score=27.35  Aligned_cols=19  Identities=21%  Similarity=0.155  Sum_probs=14.3

Q ss_pred             CCCCCccEEEECCeEe-ecc
Q 042938           60 GCQPTVPAVFIGQRLV-GGP   78 (106)
Q Consensus        60 ~~~~tvP~ifv~g~~i-Gg~   78 (106)
                      .+...+|+++|||+++ ||.
T Consensus       150 ~gv~gtPt~vvng~~~~~~~  169 (193)
T 3hz8_A          150 FQIDGVPTVIVGGKYKVEFA  169 (193)
T ss_dssp             TTCCSSSEEEETTTEEECCS
T ss_pred             hCCCcCCEEEECCEEEecCC
Confidence            3458999999999864 543

>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A

Probab=80.98  E-value=9.7  Score=25.20  Aligned_cols=79  Identities=13%  Similarity=0.223  Sum_probs=52.5

Q ss_pred             HHhhhhCCCEEEEEcCCC------chHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeec
Q 042938            4 VTRMVNEKPVVIFSKSEC------CICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGG   77 (106)
Q Consensus         4 ~~~~~~~~~v~vf~~~~C------p~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg   77 (106)
                      +++.+...+-++|.-..+      .+...+.+.|+++|++  .+.+...++..   +.+..      .-.||+.|   |.
T Consensus        24 l~~~~~~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~--~~~v~~~~d~~---~~l~~------ad~I~lpG---G~   89 (229)
T 1fy2_A           24 IANQLNGRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVN--VTGIHRVADPL---AAIEK------AEIIIVGG---GN   89 (229)
T ss_dssp             HHHHHTTCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCE--EEETTSSSCHH---HHHHH------CSEEEECC---SC
T ss_pred             HHHHhcCCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCE--EEEEeccccHH---HHHhc------CCEEEECC---Cc
Confidence            555665555556655555      6888899999999964  34443323321   23322      23788888   88


Q ss_pred             chHHHhHHHhCCchHHHHh
Q 042938           78 PNQVMSLHVQNELGPLLVR   96 (106)
Q Consensus        78 ~~~~~~~~~~g~L~~~L~~   96 (106)
                      +..+.+..+.-.|.+.|++
T Consensus        90 ~~~~~~~l~~~gl~~~l~~  108 (229)
T 1fy2_A           90 TFQLLKESRERGLLAPMAD  108 (229)
T ss_dssp             HHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHCChHHHHHH
Confidence            8888888888888888875

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=80.76  E-value=1.8  Score=27.62  Aligned_cols=15  Identities=13%  Similarity=0.286  Sum_probs=12.6

Q ss_pred             CCCCccEEEECCeEe
Q 042938           61 CQPTVPAVFIGQRLV   75 (106)
Q Consensus        61 ~~~tvP~ifv~g~~i   75 (106)
                      +...+|.++|||+++
T Consensus       149 gv~GtPtfvvng~~~  163 (185)
T 3feu_A          149 GISSVPTFVVNGKYN  163 (185)
T ss_dssp             TCCSSSEEEETTTEE
T ss_pred             CCCccCEEEECCEEE
Confidence            348899999999974

>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}

Probab=80.62  E-value=2.1  Score=28.60  Aligned_cols=70  Identities=13%  Similarity=0.098  Sum_probs=37.3

Q ss_pred             HHHHHHHhhcCCCceEE--Eccc-CCCchHHHHHHHH--hCCCCCccEEEECCe-EeecchHHHhHHHhCCchHHHHh
Q 042938           25 FSIQTLICGFGANPTVY--ELDQ-IPNGPQIERALQQ--LGCQPTVPAVFIGQR-LVGGPNQVMSLHVQNELGPLLVR   96 (106)
Q Consensus        25 ~~~~~~L~~~~v~~~~v--~vd~-~~~~~~~~~~l~~--~~~~~tvP~ifv~g~-~iGg~~~~~~~~~~g~L~~~L~~   96 (106)
                      ..+..++.+.|++-..+  .++. ......+++....  ..+...+|.++|||+ .+.|..+...+.+  .|++.+++
T Consensus       139 ~~L~~~a~~~Gld~~~~~~~l~s~~~~~~~v~~~~~~a~~~Gv~GvPtfvv~g~~~v~Ga~~~e~~~~--~i~~~~~~  214 (239)
T 3gl5_A          139 ERLVELAVGAGLDAEEVRAVLADPAAYADEVRADEREAAQLGATGVPFFVLDRAYGVSGAQPAEVFTQ--ALTQAWGE  214 (239)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHCTTTTHHHHHHHHHHHHHTTCCSSSEEEETTTEEEESSCCHHHHHH--HHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHcCcHhHHHHHHHHHHHHHHCCCCeeCeEEECCcEeecCCCCHHHHHH--HHHHHHhh
Confidence            34566667777764322  1223 2222233332221  234589999999997 5777765544432  34455544

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=80.53  E-value=1  Score=29.09  Aligned_cols=31  Identities=10%  Similarity=0.174  Sum_probs=21.7

Q ss_pred             CEEEEEcCCCchHHHHHHHH----hhcC--CCceEEE
Q 042938           12 PVVIFSKSECCICFSIQTLI----CGFG--ANPTVYE   42 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L----~~~~--v~~~~v~   42 (106)
                      +|.+|+-..||||-.+...|    .+++  +++..+-
T Consensus         4 ~I~~~~D~~CP~cy~~~~~l~~l~~~~~~~v~v~~~p   40 (208)
T 3kzq_A            4 KLYYVHDPMCSWCWGYKPTIEKLKQQLPGVIQFEYVV   40 (208)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHSCTTSEEEEEE
T ss_pred             EEEEEECCCCchhhhhhHHHHHHHHhCCCCceEEEEe
Confidence            68899999999998776544    4443  5544443

>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}

Probab=80.48  E-value=2.4  Score=27.32  Aligned_cols=33  Identities=12%  Similarity=0.127  Sum_probs=24.2

Q ss_pred             CCCEEEEEcCCCchHHHHH----HHHhhcCCCceEEE
Q 042938           10 EKPVVIFSKSECCICFSIQ----TLICGFGANPTVYE   42 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~----~~L~~~~v~~~~v~   42 (106)
                      +.+|.+|+-.-||||--..    +++...+++.+..-
T Consensus         4 ~~~I~~~~D~~cPwcyi~~~~l~~~~~~~~~~v~~~p   40 (202)
T 3fz5_A            4 MNPIEFWFDFSSGYAFFAAQRIEALAAELGRTVLWRP   40 (202)
T ss_dssp             CSCEEEEECTTCHHHHHHHTTHHHHHHHHTCCEEEEE
T ss_pred             CceeEEEEeCCCHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence            5689999999999997554    44455677765543

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=80.40  E-value=0.67  Score=29.82  Aligned_cols=17  Identities=18%  Similarity=0.206  Sum_probs=13.9

Q ss_pred             CCCCccEEEECCeEeec
Q 042938           61 CQPTVPAVFIGQRLVGG   77 (106)
Q Consensus        61 ~~~tvP~ifv~g~~iGg   77 (106)
                      +...+|++||||+.+.|
T Consensus       151 GV~gtPtf~ing~~~~~  167 (182)
T 3gn3_A          151 GIHVSPTFMINGLVQPG  167 (182)
T ss_dssp             TCCSSSEEEETTEECTT
T ss_pred             CCCccCEEEECCEEccC
Confidence            34899999999998743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d1ktea_	105	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	1e-17
d1wika_	109	c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (M	7e-14
d1fova_	82	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	5e-12
d1egoa_	85	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	4e-08
d1nm3a1	74	c.47.1.1 (A:166-239) C-terminal, Grx domain of Hyb	2e-07
d1h75a_	76	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Esch	1e-06
d1r7ha_	74	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Cory	2e-06
d1t1va_	93	c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [Tax	3e-04

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 69.3 bits (169), Expect = 1e-17
 Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 3/100 (3%)

Query: 4   VTRMVNEKPVVIFSKSECCICFSIQTLICGFGANPTVYEL---DQIPNGPQIERALQQLG 60
           V   +    VV+F K  C  C   Q L+        + E        +  +I+  LQQL 
Sbjct: 5   VNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLT 64

Query: 61  CQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGAI 100
              TVP VFIG+  +GG   + S+H + EL   L + GA+
Sbjct: 65  GARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQVGAV 104

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (145), Expect = 7e-14
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 4   VTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQ 58
           +  + N+  V++F K     ++C     I  ++   G     ++   I    ++ + L+ 
Sbjct: 8   LKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFD---ILEDEEVRQGLKT 64

Query: 59  LGCQPTVPAVFIGQRLVGGPNQVMSLHVQNELGPLLVRAGA 99
               PT P +++   LVGG + V  L    EL P+L     
Sbjct: 65  FSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKGESG 105

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

 Score = 54.6 bits (131), Expect = 5e-12
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 3/82 (3%)

Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72
          V I++K  C  C   + L+   G +     +D           + +   + TVP +FI  
Sbjct: 3  VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAA---KREEMIKRSGRTTVPQIFIDA 59

Query: 73 RLVGGPNQVMSLHVQNELGPLL 94
          + +GG + + +L  +  L PLL
Sbjct: 60 QHIGGYDDLYALDARGGLDPLL 81

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

 Score = 44.6 bits (105), Expect = 4e-08
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL----GCQPTVPAV 68
           VIF +S C  C   + L          ++   +    +                TVP +
Sbjct: 3  TVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQI 62

Query: 69 FIGQRLVGGPNQVMSLHVQN 88
          F+ Q+ +GG     +   +N
Sbjct: 63 FVDQQHIGGYTDFAAWVKEN 82

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 43.0 bits (101), Expect = 2e-07
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF 69
          ++ + IF+K  C  C   + L+   G +     L           +++ +  + TVP VF
Sbjct: 4  QESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDAT----IVSVRAVSGRTTVPQVF 59

Query: 70 IGQRLVGGPNQVM 82
          IG + +GG + + 
Sbjct: 60 IGGKHIGGSDDLE 72

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

 Score = 40.8 bits (95), Expect = 1e-06
 Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 6/75 (8%)

Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72
          + I+++++C  C + +  +   G +  +  +D++P          +      +P V  G 
Sbjct: 3  ITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEA----AEALRAQGFRQLPVVIAGD 58

Query: 73 RLVGG--PNQVMSLH 85
              G  P+ +  LH
Sbjct: 59 LSWSGFRPDMINRLH 73

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

 Score = 40.4 bits (94), Expect = 2e-06
 Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 4/65 (6%)

Query: 13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ 72
          + +++K  C  C + +  +   G      ++           AL         P V +  
Sbjct: 3  ITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALG----YVQAPVVEVDG 58

Query: 73 RLVGG 77
              G
Sbjct: 59 EHWSG 63

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.5 bits (79), Expect = 3e-04
 Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 7/90 (7%)

Query: 11 KPVVIFSKSECCI------CFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPT 64
            + ++S S             +  ++ G      + ++ Q        R L     + T
Sbjct: 2  SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNP-KAT 60

Query: 65 VPAVFIGQRLVGGPNQVMSLHVQNELGPLL 94
           P +  G    G     +    Q+ L   L
Sbjct: 61 PPQIVNGNHYCGDYELFVEAVEQDTLQEFL 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	100.0
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	99.97
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.97
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	99.93
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	99.88
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.88
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	99.87
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	99.85
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.52
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.45
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	99.27
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	99.23
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	99.13
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	99.1
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.07
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	99.0
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	99.0
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	99.0
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	99.0
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	98.97
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	98.94
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.93
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	98.92
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	98.88
d1axda2	80	Class phi GST {Maize (Zea mays), type I [TaxId: 45	98.86
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	98.82
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	98.79
d1fw1a2	83	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	98.77
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.77
d1gnwa2	84	Class phi GST {Mouse-ear cress (Arabidopsis thalia	98.74
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.74
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	98.74
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.73
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.72
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	98.67
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	98.65
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.63
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	98.62
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	98.61
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	98.55
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	98.53
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.47
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	98.43
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	98.39
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.39
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	98.35
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	98.29
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	98.24
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	98.18
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.15
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	98.15
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	98.13
d2cvda2	74	Class sigma GST {Human (Homo sapiens) [TaxId: 9606	98.12
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	98.1
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.09
d2a2ra2	77	Class pi GST {Human (Homo sapiens) [TaxId: 9606]}	98.08
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	98.03
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	97.93
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	97.89
d1j9ba_	138	Arsenate reductase ArsC {Escherichia coli [TaxId:	97.82
d1okta2	85	Pf GST {Malarial parasite (Plasmodium falciparum)	97.78
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	97.76
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	97.74
d1n2aa2	80	Class beta GST {Escherichia coli [TaxId: 562]}	97.68
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	97.67
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	97.65
d1gula2	77	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	97.64
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	97.6
d1f2ea2	80	Class beta GST {Sphingomonas paucimobilis [TaxId:	97.58
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	97.57
d1b48a2	78	Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax	97.57
d1xg8a_	111	Hypothetical protein SA0798 {Staphylococcus aureus	97.49
d1pmta2	80	Class beta GST {Proteus mirabilis [TaxId: 584]}	97.44
d2gsqa2	75	Class sigma GST {Squid (Ommastrephes sloani pacifi	97.44
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.44
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	97.43
d1m0ua2	76	Class sigma GST {Fruit fly (Drosophila melanogaste	97.43
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	97.39
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	97.31
d1tu7a2	77	Class pi GST {Onchocerca volvulus [TaxId: 6282]}	97.25
d2c4ja2	84	Class mu GST {Human (Homo sapiens) [TaxId: 9606]}	97.08
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	97.04
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.03
d1k3ya2	79	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	97.01
d1duga2	80	Class alpha GST {Schistosoma japonicum [TaxId: 618	96.92
d1fhea2	80	Class alpha GST {Fasciola hepatica [TaxId: 6192]}	96.89
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	96.85
d1tw9a2	77	Class sigma GST {Heligmosomoides polygyrus [TaxId:	96.84
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	96.78
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	96.76
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	96.71
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	96.69
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	96.57
d1nhya2	75	GST-like domain of elongation factor 1-gamma {Bake	96.54
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.48
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	96.23
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	96.15
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	96.02
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	95.44
d2fnoa2	87	Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobac	95.43
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	95.09
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	94.76
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	93.0
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	92.55
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	92.4
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	92.2
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	89.99
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	88.41
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	88.16
d1oe8a2	81	Class alpha GST {Blood fluke (Schistosoma haematob	88.0
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	87.36
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	85.32
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	85.03
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	84.08
d1u11a_	159	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	83.68
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	83.1
d1xmpa_	155	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	81.55
d1o4va_	169	N5-CAIR mutase (phosphoribosylaminoimidazole carbo	81.43
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	80.03

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.1e-33  Score=172.40  Aligned_cols=100  Identities=30%  Similarity=0.461  Sum_probs=91.8

Q ss_pred             hHHHhhhhCCCEEEEEcCCCchHHHHHHHHhhcCCC---ceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecc
Q 042938            2 DMVTRMVNEKPVVIFSKSECCICFSIQTLICGFGAN---PTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGP   78 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~---~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~   78 (106)
                      .+|++.+++++|+||++++||||.+++++|++++++   +.+.++|...+...+++++.+.++.+|+|+|||||++|||+
T Consensus         3 ~~v~~~i~~~~Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi~g~~IGG~   82 (105)
T d1ktea_           3 AFVNSKIQPGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGC   82 (105)
T ss_dssp             HHHHHHCCTTCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETTEEEESH
T ss_pred             hHHHHHhccCCEEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEEECCEEEecH
Confidence            368899999999999999999999999999999987   45677888888777888888888889999999999999999


Q ss_pred             hHHHhHHHhCCchHHHHhcCcee
Q 042938           79 NQVMSLHVQNELGPLLVRAGAIW  101 (106)
Q Consensus        79 ~~~~~~~~~g~L~~~L~~~g~~~  101 (106)
                      +++.+++++|+|.++|+++||+.
T Consensus        83 ~el~~l~~~G~L~~~L~~~Ga~~  105 (105)
T d1ktea_          83 TDLESMHKRGELLTRLQQVGAVK  105 (105)
T ss_dssp             HHHHHHHHHTHHHHHHHHHTCBC
T ss_pred             HHHHHHHHCCCHHHHHHHcCCCC
Confidence            99999999999999999999974

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.1e-32  Score=166.94  Aligned_cols=96  Identities=22%  Similarity=0.399  Sum_probs=87.9

Q ss_pred             hHHHhhhhCCCEEEEEc-----CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938            2 DMVTRMVNEKPVVIFSK-----SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus         2 ~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      .++++++++++|+||++     |.||||.+++++|++++++|.++|++.+++   +++.+...++++|||+|||+|++||
T Consensus         6 ~~i~~~i~~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~---~~~~l~~~t~~~TvPqIFi~g~~IG   82 (109)
T d1wika_           6 SGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEE---VRQGLKTFSNWPTYPQLYVRGDLVG   82 (109)
T ss_dssp             CCHHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHH---HHHHHHHHHSCCSSCEEECSSSEEE
T ss_pred             HHHHHHHhcCCEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEecccHH---HHHHHHHhcCCCCCCeEEECCEEEc
Confidence            36889999999999998     779999999999999999999999997765   4457777788899999999999999


Q ss_pred             cchHHHhHHHhCCchHHHHhcCce
Q 042938           77 GPNQVMSLHVQNELGPLLVRAGAI  100 (106)
Q Consensus        77 g~~~~~~~~~~g~L~~~L~~~g~~  100 (106)
                      |+|++++++++|+|.++|+++|+.
T Consensus        83 G~ddl~~l~~~G~L~~lL~~~~~~  106 (109)
T d1wika_          83 GLDIVKELKDNGELLPILKGESGP  106 (109)
T ss_dssp             CHHHHHHHHHHTCSHHHHHTCCSC
T ss_pred             CHHHHHHHHHCCCHHHHHHhcCCC
Confidence            999999999999999999999874

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=99.97  E-value=1.5e-30  Score=151.84  Aligned_cols=82  Identities=24%  Similarity=0.459  Sum_probs=74.4

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHHHhCCc
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLHVQNEL   90 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~~~g~L   90 (106)
                      +.|+||++++||||.+++.+|++.|++|+++||+.+++..+   .+.+.++.+|+|+||+||++|||++++.+++++|+|
T Consensus         1 a~I~iys~~~Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~---~~~~~~g~~tvP~i~i~~~~IGG~~el~~l~~~g~L   77 (82)
T d1fova_           1 ANVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKRE---EMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGGL   77 (82)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHH---HHHHHHSSCCSCEEEETTEEEESHHHHHHHHHTTCS
T ss_pred             CcEEEEeCCCCHhHHHHHHHHHHcCCCeEEEeccchHHHHH---HHHHHhCCCCCCeEEECCEEEecHHHHHHHHHcCCH
Confidence            36999999999999999999999999999999998876543   555566779999999999999999999999999999


Q ss_pred             hHHHH
Q 042938           91 GPLLV   95 (106)
Q Consensus        91 ~~~L~   95 (106)
                      +++|+
T Consensus        78 ~~lLk   82 (82)
T d1fova_          78 DPLLK   82 (82)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99985

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.93  E-value=1.4e-25  Score=128.20  Aligned_cols=70  Identities=24%  Similarity=0.451  Sum_probs=61.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      +.+|+|||+++||||.+|+++|++.|++|.+++++.++..+.    +.+.++.+|+|+||+||++|||++|+.+
T Consensus         4 ~~~I~iYs~~~C~~C~~ak~lL~~~~i~~~~~~v~~~~~~~~----~~~~~~~~tvP~i~i~g~~IGG~~el~~   73 (74)
T d1nm3a1           4 QESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDATIVS----VRAVSGRTTVPQVFIGGKHIGGSDDLEK   73 (74)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHTCCCEEEETTTTCCHHH----HHHHTCCSSSCEEEETTEEEESHHHHHH
T ss_pred             cCcEEEEECCCCHHHHHHHHHHHHcCCCeEEEEccCcHHHHH----HHHHhCCccCCEEEECCEEEEChHHHhh
Confidence            457999999999999999999999999999999998876543    3345777999999999999999999865

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.3e-24  Score=129.14  Aligned_cols=85  Identities=15%  Similarity=0.162  Sum_probs=73.6

Q ss_pred             CCCEEEEEcCCC------chHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC--CCCccEEEECCeEeecchHH
Q 042938           10 EKPVVIFSKSEC------CICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC--QPTVPAVFIGQRLVGGPNQV   81 (106)
Q Consensus        10 ~~~v~vf~~~~C------p~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~--~~tvP~ifv~g~~iGg~~~~   81 (106)
                      +.+|.||+++.|      ++|.+++.+|++++++|+++||+.+++..+   .+...++  .+++|+||+||++|||+|++
T Consensus         1 m~~i~vy~ts~~~~~~~~~~~~r~~~lL~~~~I~y~~iDi~~d~~~~~---~~~~~~g~~~~t~Pqifv~~~~iGg~del   77 (93)
T d1t1va_           1 MSGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRD---EMRTLAGNPKATPPQIVNGNHYCGDYELF   77 (93)
T ss_dssp             CCCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHH---HHHHHTTCTTCCSCEEEETTEEEEEHHHH
T ss_pred             CCCEEEEEccCcCChhhHHHHHHHHHHHHHCCCceEEEEecCchhHHH---HHHHhccCCCceeEEEEECCEEEecHHHH
Confidence            467999999999      599999999999999999999998765444   4444433  46999999999999999999


Q ss_pred             HhHHHhCCchHHHHhc
Q 042938           82 MSLHVQNELGPLLVRA   97 (106)
Q Consensus        82 ~~~~~~g~L~~~L~~~   97 (106)
                      .+++++|+|.++|+.|
T Consensus        78 ~~~~e~g~L~~~lk~a   93 (93)
T d1t1va_          78 VEAVEQDTLQEFLKLA   93 (93)
T ss_dssp             HHHHHTTCHHHHTTCC
T ss_pred             HHHHHCCCHHHHhccC
Confidence            9999999999999754

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=99.88  E-value=3.8e-23  Score=117.83  Aligned_cols=64  Identities=14%  Similarity=0.260  Sum_probs=56.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecch
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPN   79 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~   79 (106)
                      +|+||++++||+|.+++++|++.|++|++++|+.+++..+   .+...+ .+++|+||+||++||||+
T Consensus         2 ~v~iYt~~~C~~C~~ak~~L~~~~i~~~~~~i~~~~~~~~---~~~~~g-~~tvP~i~i~g~~igGf~   65 (74)
T d1r7ha_           2 SITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEARD---YVMALG-YVQAPVVEVDGEHWSGFR   65 (74)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHH---HHHHTT-CBCCCEEEETTEEEESCC
T ss_pred             EEEEEeCCCChhHHHHHHHHHHcCCceEEEEccCCHHHHH---HHHHhC-CCCcCEEEECCEEEeCCC
Confidence            5899999999999999999999999999999998765443   555544 589999999999999995

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.3e-23  Score=122.89  Aligned_cols=73  Identities=23%  Similarity=0.342  Sum_probs=58.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhC--CCCCccEEEECCeEeecchHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLG--CQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~--~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +|+|||+++||||.+++++|++++     ++|.+++++.++...+   .+.+..  ..+|+|+||+||++|||++++.++
T Consensus         2 kvviysk~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~tvPqIfi~g~~IGG~~el~~~   78 (85)
T d1egoa_           2 QTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKE---DLQQKAGKPVETVPQIFVDQQHIGGYTDFAAW   78 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSH---HHHHHTCCCSCCSCEEEETTEEEESSHHHHHH
T ss_pred             EEEEEeCCCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHH---HHHHHhcCCCCCCCEEEECCEEEECHHHHHHH
Confidence            689999999999999999999965     5677777877766554   333332  237999999999999999999988


Q ss_pred             HHh
Q 042938           85 HVQ   87 (106)
Q Consensus        85 ~~~   87 (106)
                      .++
T Consensus        79 ~~~   81 (85)
T d1egoa_          79 VKE   81 (85)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=1.2e-22  Score=116.38  Aligned_cols=69  Identities=19%  Similarity=0.423  Sum_probs=58.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecc--hHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGP--NQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~--~~~~~~   84 (106)
                      +|+||++++||+|.+++++|++.|++|+++||+.+++..+   .+... +.+++|+|++||++||||  |.+.+|
T Consensus         2 ki~iYs~~~C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~---~~~~~-g~~tvP~i~i~~~~i~Gf~~d~i~~L   72 (76)
T d1h75a_           2 RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAE---ALRAQ-GFRQLPVVIAGDLSWSGFRPDMINRL   72 (76)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHH---HHHHT-TCCSSCEEEETTEEEESCCHHHHGGG
T ss_pred             EEEEEeCCCCccHHHHHHHHHhcCceeEEEeecCCHHHHH---HHHhc-CCCCCCEEEECCEEEECCCHHHHHHH
Confidence            5999999999999999999999999999999998765433   45444 469999999999999998  444433

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.85  E-value=2.1e-21  Score=113.90  Aligned_cols=73  Identities=18%  Similarity=0.240  Sum_probs=58.2

Q ss_pred             EEEEEcCC----CchHHHHHHHHhhcCCCceEEEcccCCCc---hHHHHHHHHh----CCCCCccEEEE-CCeEeecchH
Q 042938           13 VVIFSKSE----CCICFSIQTLICGFGANPTVYELDQIPNG---PQIERALQQL----GCQPTVPAVFI-GQRLVGGPNQ   80 (106)
Q Consensus        13 v~vf~~~~----Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~---~~~~~~l~~~----~~~~tvP~ifv-~g~~iGg~~~   80 (106)
                      +.||+.+.    ||||.+|+++|++.|++|+.++++.....   ...++.++..    ++.+||||||+ ||++|||+++
T Consensus         2 ~~Iy~~~~~~~~C~~C~~AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~de   81 (87)
T d1abaa_           2 FKVYGYDSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFDQ   81 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHHH
T ss_pred             EEEEEeCCCCCCChhHHHHHHHHHHcCCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEecCCcEEECHHH
Confidence            57898765    99999999999999999999999876442   2233444433    45689999999 5999999999


Q ss_pred             HHhHH
Q 042938           81 VMSLH   85 (106)
Q Consensus        81 ~~~~~   85 (106)
                      +.+++
T Consensus        82 l~e~~   86 (87)
T d1abaa_          82 LREYF   86 (87)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98764

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=9.9e-15  Score=86.88  Aligned_cols=76  Identities=13%  Similarity=0.212  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEe--ecchHHHhHHHh
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV--GGPNQVMSLHVQ   87 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i--Gg~~~~~~~~~~   87 (106)
                      +..|++|+++|||+|..++.+|++.+.+|...+++.+.+...   .|.+..+. .+|+|++||+.+  |.+|+       
T Consensus        16 ~p~i~lft~~~C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~---~l~~~y~~-~VPvl~idg~~~~~g~~d~-------   84 (100)
T d1wjka_          16 LPVLTLFTKAPCPLCDEAKEVLQPYKDRFILQEVDITLPENS---TWYERYKF-DIPVFHLNGQFLMMHRVNT-------   84 (100)
T ss_dssp             CCEEEEEECSSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTH---HHHHHSSS-SCSEEEESSSEEEESSCCH-------
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHhhhhcceEEEecccccCH---HHHHHhcc-cCCceeecCceEEeCCCCH-------
Confidence            446899999999999999999999999988777666555443   33344443 499999999653  44542       


Q ss_pred             CCchHHHHh
Q 042938           88 NELGPLLVR   96 (106)
Q Consensus        88 g~L~~~L~~   96 (106)
                      .+|++.|++
T Consensus        85 ~~L~~~L~~   93 (100)
T d1wjka_          85 SKLEKQLRK   93 (100)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHHH
Confidence            255555655

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.45  E-value=7.9e-14  Score=82.17  Aligned_cols=60  Identities=17%  Similarity=0.263  Sum_probs=43.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEee
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVG   76 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iG   76 (106)
                      ...+++|+++|||+|+.+..+|+++.     +.+..+|++.+++      ...+++ ..++|++|+||+.++
T Consensus        16 ~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~------l~~~~~-I~~vPt~~~ng~~~~   80 (96)
T d1hyua4          16 DFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQN------EITERN-VMGVPAVFVNGKEFG   80 (96)
T ss_dssp             CEEEEEEECTTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHH------HHHHTT-CCSSSEEEETTEEEE
T ss_pred             CeEEEEEECCCCcchHHHHHHHHHHHHhCCceEEEEEecccchH------HHhhcc-cccccEEEECCEEEE
Confidence            34578899999999999999997653     4455566655432      333444 489999999998775

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=99.27  E-value=3.5e-12  Score=72.05  Aligned_cols=57  Identities=11%  Similarity=0.112  Sum_probs=43.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhh-cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeec
Q 042938           13 VVIFSKSECCICFSIQTLICG-FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGG   77 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~-~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg   77 (106)
                      +++||+++|+.|..++.+|.+ .+++++++||+.+++      ...+++  ..||++.++|...-+
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~~~~~~~~~vdI~~d~~------l~~~y~--~~IPVl~~~~~~~l~   59 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQARAGAFFSVFIDDDAA------LESAYG--LRVPVLRDPMGRELD   59 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCCEEEEECTTCHH------HHHHHT--TTCSEEECTTCCEEE
T ss_pred             EEEECCCCccHHHHHHHHHHhccCCcEEEEEccCCHH------HHHHhC--CeeeEEEECCeeEEc
Confidence            799999999999999998755 579999999997642      333334  459999997744333

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=3.6e-11  Score=67.63  Aligned_cols=67  Identities=10%  Similarity=0.107  Sum_probs=54.4

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLH   85 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~   85 (106)
                      .+|+.+.||||.+++.+|..+|++|+.+.++.+.. +    .+.+.++..+||++.. ||+.+....++.+..
T Consensus         2 kLY~~~~cP~~~rvr~~l~~kgi~~e~~~~~~~~~-~----~~~~~~p~~~VP~L~~~dg~~i~eS~~I~~yL   69 (75)
T d1g7oa2           2 KLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDA-E----TPTRMVGQKQVPILQKDDSRYMPESMDIVHYV   69 (75)
T ss_dssp             EEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTTT-H----HHHHHHSSSCCCEEEETTTEEEECHHHHHHHH
T ss_pred             EEEccCCCCchHHHHHHHHHhCCCcccccccccch-H----HHHHhCCCCceEEEEEcCCCEEecHHHHHHHH
Confidence            48999999999999999999999999988865432 2    2334466789999987 679999998887754

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.13  E-value=4.8e-10  Score=64.19  Aligned_cols=73  Identities=12%  Similarity=0.041  Sum_probs=59.4

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCC-CCCccEEEECCeEeecchHHHhHH
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGC-QPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~-~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .+..+++|+...||+|.+++-.|..+|++|+.+.++......+   + .+.+. ..+||++..||..+.....+.+..
T Consensus         2 ~~~~l~Ly~~~~Sp~~~rvr~~L~~kgi~~e~~~v~~~~~~~~---~-~~~nP~~g~vP~L~~~g~~l~eS~~I~~YL   75 (84)
T d1oyja2           2 EEKELVLLDFWVSPFGQRCRIAMAEKGLEFEYREEDLGNKSDL---L-LRSNPVHRKIPVLLHAGRPVSESLVILQYL   75 (84)
T ss_dssp             CSCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHH---H-HHHSTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCCceEEEcCCCChHHHHHHHHHHHcCCCcEEEEEccCcCCHH---H-HhhCCCcCcccEEEECCceEEcHHHHHHHH
Confidence            3568999999999999999999999999999999987554333   3 33343 478999999999998888777654

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=99.10  E-value=7.1e-10  Score=62.93  Aligned_cols=71  Identities=8%  Similarity=0.020  Sum_probs=58.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .+.+|+...||||.+++-+|..+|++|+.+.++......+   +++.......+|.+..||..|.....+.+..
T Consensus         3 ~mkLy~~~~sp~~~rvr~~l~~kgi~~e~~~v~~~~~~~~---~~~~~~~~~~~p~l~~dg~~i~eS~~I~~YL   73 (83)
T d1gwca2           3 DLKLLGAWPSPFVTRVKLALALKGLSYEDVEEDLYKKSEL---LLKSNPVHKKIPVLIHNGAPVCESMIILQYI   73 (83)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTSCCHH---HHHHSTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             eEEEEecCCChHHHHHHHHHHHCCCCeEEEEEeccchhHH---HHHHHhccCCCceeecCCceEcCHHHHHHHH
Confidence            5789999999999999999999999999999987544433   4444444467899999999999988877753

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.07  E-value=3.8e-11  Score=68.72  Aligned_cols=60  Identities=18%  Similarity=0.270  Sum_probs=42.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCe--Eeecc
Q 042938           12 PVVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQR--LVGGP   78 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~--~iGg~   78 (106)
                      .|.+|+++|||+|++++..+++.    +  +.+..+|+|.+++..      .+ .+..++|+++++|+  ++|..
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~------~~-~~V~~~Pt~~~~~~~~~~G~~   71 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREKA------IE-YGLMAVPAIAINGVVRFVGAP   71 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGGG------GG-TCSSCSSEEEETTTEEEECSS
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccccccccccccccchhhH------Hh-cCceEeCEEEECCcEEEEcCC
Confidence            68899999999999999888654    3  445556665544322      22 34589999999984  56654

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.7e-09  Score=61.23  Aligned_cols=70  Identities=17%  Similarity=0.239  Sum_probs=56.1

Q ss_pred             CEEEEEc--------CCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938           12 PVVIFSK--------SECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus        12 ~v~vf~~--------~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      .+.+|.+        ..||||++++-+|..+|++|+.+.|+.....+    .+...+....+|++..||..+.....+.+
T Consensus         2 ~i~l~~ka~~dg~~~~~cPf~~rv~~~L~~kgi~~~~~~v~~~~~~~----~~~~~nP~~~vPvL~~~~~~i~eS~~I~~   77 (86)
T d1k0ma2           2 QVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTE----TVQKLCPGGELPFLLYGTEVHTDTNKIEE   77 (86)
T ss_dssp             CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTSCCH----HHHHHCTTCCSSEEEETTEEEECHHHHHH
T ss_pred             cEEEEEecCCCcCcCCCCHhHHHHHHHHHHHCCCcEEEEeecccccH----HHHHHhccCceeEEEEcccccccHHHHHH
Confidence            4677844        35999999999999999999999998754333    34455777899999999999999887776


Q ss_pred             HH
Q 042938           84 LH   85 (106)
Q Consensus        84 ~~   85 (106)
                      ..
T Consensus        78 YL   79 (86)
T d1k0ma2          78 FL   79 (86)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=1.2e-09  Score=64.21  Aligned_cols=73  Identities=12%  Similarity=0.061  Sum_probs=58.5

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHhHH
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMSLH   85 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~~~   85 (106)
                      .+..+.+|+.+.||||.+++-+|..+|++|+.++|+.....+    .+.+.+...+||++..+ |..|.+...+.+..
T Consensus        16 ~~~~~~Ly~~~~sP~~~rv~~~l~~kgi~~e~~~v~~~~~~~----~~~~~nP~g~VPvL~~~dg~~i~eS~aI~~YL   89 (98)
T d1eema2          16 PEGSIRIYSMRFCPFAERTRLVLKAKGIRHEVININLKNKPE----WFFKKNPFGLVPVLENSQGQLIYESAITCEYL   89 (98)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHHHHTTCCEEEEEBCTTSCCG----GGGGTCTTCCSCEEEETTCCEEESHHHHHHHH
T ss_pred             CCCcEEEEcCCCChHHHHHHHHHHHhCCCCEEEEecccCCcH----HHHhhhccccceeEEeCCCCEEcCHHHHHHHH
Confidence            345699999999999999999999999999999987654333    33445767899999885 68888887776654

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.00  E-value=2.5e-09  Score=60.44  Aligned_cols=73  Identities=10%  Similarity=0.165  Sum_probs=58.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++.+|..+.||+|.+++-+|..+|++|+.+.|+....... .+.+.+.+...++|++..||..+.+...+....
T Consensus         1 ~m~Ly~~~~sp~~~kv~~~L~~~gi~~~~~~i~~~~~~~~-~~~~~~~~p~~~vPvL~~~~~~l~eS~aI~~yL   73 (80)
T d1e6ba2           1 KLKLYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQF-DSDFKKINPMGTVPALVDGDVVINDSFAIIMYL   73 (80)
T ss_dssp             CCEEEECTTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGG-CHHHHHHCTTCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEeccccccc-cHHHhhcCccccCCEEEECCEEEECHHHHHHHH
Confidence            4689999999999999999999999999999886543221 123345577789999999999998888776653

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=99.00  E-value=6e-10  Score=66.95  Aligned_cols=68  Identities=10%  Similarity=0.271  Sum_probs=54.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC----CeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG----QRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~----g~~iGg~~~~~~~~   85 (106)
                      ++++|+.+.||||.+++.+|..+|++|+.++++......     + ..++..++|+++.+    |+.++....+.+..
T Consensus         2 ~i~LY~~~~sP~~~kvr~~L~~k~l~~~~~~v~~~~~~~-----~-~~~~~~~vP~l~~~~~~~g~~i~eS~~Ii~YL   73 (113)
T d1z9ha2           2 QLTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAE-----I-KFSSYRKVPILVAQEGESSQQLNDSSVIISAL   73 (113)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTCGG-----G-TTCSCCSSCEEEEEETTEEEEECSHHHHHHHH
T ss_pred             EEEEEcCCCChHHHHHHHHHHHcCCeeEEeccCcccchh-----h-ccCccccccccccccCCCceEeecHHHHHHHH
Confidence            589999999999999999999999999999997654322     1 23566899998743    47899998887644

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=98.97  E-value=2.7e-09  Score=60.68  Aligned_cols=70  Identities=16%  Similarity=0.113  Sum_probs=57.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +.+|+.+.||+|++++-+|..+|++|+.+.|+..... . .+.+.+.+...+||++..||..+.....+.+.
T Consensus         1 m~LY~~~~Sp~~~~v~~~l~~~gi~~e~~~v~~~~~~-~-~~~~~~~nP~g~VP~L~~~g~~l~eS~aI~~Y   70 (83)
T d1v2aa2           1 MDYYYSLISPPCQSAILLAKKLGITLNLKKTNVHDPV-E-RDALTKLNPQHTIPTLVDNGHVVWESYAIVLY   70 (83)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHTCCCEEEECCTTCHH-H-HHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEECCCCChHHHHHHHHHHHhCCCceEEEEeCCCCc-c-hHHHHHHhhccCCCEEEEccceeEcHHHHHHH
Confidence            3689999999999999999999999999998864322 2 23455667778999999999999888777664

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.94  E-value=2.7e-09  Score=63.87  Aligned_cols=73  Identities=14%  Similarity=0.251  Sum_probs=53.4

Q ss_pred             hHHHhhhhCCC--EEEEEcCCCchHHHHHHHHhh----cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938            2 DMVTRMVNEKP--VVIFSKSECCICFSIQTLICG----FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR   73 (106)
Q Consensus         2 ~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~   73 (106)
                      +.++++++.++  ++.|+++|||+|+++.+.|.+    .+.....++++..++....++...+++. .++|++  |-+|+
T Consensus        17 ~~~~~~i~~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V-~~~PTli~~~~gk   95 (115)
T d1zmaa1          17 VRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGI-PTVPGFVHITDGQ   95 (115)
T ss_dssp             HHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTC-CSSCEEEEEETTE
T ss_pred             HHHHHHHhcCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhhhhhheeeccccccccccccccccc-ccccEEEEEECCE
Confidence            45667776654  566888999999999888754    4666778888877666666666666665 889997  45776


Q ss_pred             Ee
Q 042938           74 LV   75 (106)
Q Consensus        74 ~i   75 (106)
                      .+
T Consensus        96 ~~   97 (115)
T d1zmaa1          96 IN   97 (115)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.93  E-value=6.3e-10  Score=66.79  Aligned_cols=67  Identities=10%  Similarity=0.192  Sum_probs=45.0

Q ss_pred             hHHHhhhhCCCE--EEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECC
Q 042938            2 DMVTRMVNEKPV--VIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQ   72 (106)
Q Consensus         2 ~~~~~~~~~~~v--~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g   72 (106)
                      +.++++++.+++  +.|+.+||+.|+.++..|+++     ++.+-.+|+|..++      ...+++ ..++|++  |.+|
T Consensus        17 ~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~------l~~~~~-V~~~Pt~~~~~~G   89 (113)
T d1r26a_          17 EQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSE------IVSKCR-VLQLPTFIIARSG   89 (113)
T ss_dssp             HHHHHHHHSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH------HHHHTT-CCSSSEEEEEETT
T ss_pred             HHHHHHHcCCCeEEEEEECCCCccchhhceeccccccccccccccccccccchh------hHHHcc-ccCCCEEEEEECC
Confidence            456677777653  338999999999999888764     45555666665432      222334 4888886  6788


Q ss_pred             eEe
Q 042938           73 RLV   75 (106)
Q Consensus        73 ~~i   75 (106)
                      +.+
T Consensus        90 ~~v   92 (113)
T d1r26a_          90 KML   92 (113)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=6.3e-09  Score=60.26  Aligned_cols=73  Identities=12%  Similarity=0.129  Sum_probs=57.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE---CCeEeecchHHHhH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI---GQRLVGGPNQVMSL   84 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv---~g~~iGg~~~~~~~   84 (106)
                      ..+++|+.+.||+|.+++-+|+++|++|+.+.++....... .+.+.+.+...++|++..   ||..+.....+...
T Consensus         4 ~~~tLY~~~~sp~~~kV~~~L~e~gi~ye~~~v~~~~~~~~-~~~~~~~np~g~vP~L~d~~~~~~~l~ES~aI~~Y   79 (92)
T d1k0da2           4 EGYTLFSHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHR-APEFVSVNPNARVPALIDHGMDNLSIWESGAILLH   79 (92)
T ss_dssp             SSEEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGG-SHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHH
T ss_pred             CceEEeeCCCCccHHHHHHHHHHcCCCCEEEEeeccCCccc-CHHHHHHhhccccceeEEecccceEEcCHHHHHHH
Confidence            46899999999999999999999999999999987544221 124445676789999986   78888777666554

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=98.88  E-value=1.4e-09  Score=61.74  Aligned_cols=74  Identities=11%  Similarity=0.157  Sum_probs=57.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      .++.+|+.+.||+|.+++-+|.++|++|+.+.+|....... .+.+.+.+...++|++..||..+.....+.+..
T Consensus         1 Apm~Ly~~~~sp~~~~v~~~l~e~gi~~e~~~v~~~~~~~~-~~~~~~~nP~g~vP~L~~~~~~l~eS~aI~~YL   74 (81)
T d1aw9a2           1 APLKLYGMPLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHK-QPDFLALNPFGQIPALVDGDEVLFESRAINRYI   74 (81)
T ss_dssp             CCEEEESCTTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSC-CCSGGGTCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCEEEEeCCCChhHHHHHHHHHhcCCCCEEEEecCCCcchh-hHHHHHHhhcCeeEEEEECCcEEECHHHHHHHH
Confidence            36899999999999999999999999999998875422111 012334566689999999999998887776643

>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

Probab=98.86  E-value=8.6e-09  Score=58.21  Aligned_cols=73  Identities=10%  Similarity=0.031  Sum_probs=58.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      .++.+|+.+.||+|.+++-+|.++|++|+.+.|+.......- +.+.+.+...++|++..||..+.....+...
T Consensus         1 ap~~Ly~~~~S~~~~kv~~~L~e~gi~~e~~~v~~~~~~~~~-~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~Y   73 (80)
T d1axda2           1 APMKLYGAVMSWNLTRCATALEEAGSDYEIVPINFATAEHKS-PEHLVRNPFGQVPALQDGDLYLFESRAICKY   73 (80)
T ss_dssp             CCEEEESCTTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGS-HHHHTTCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCCEEEEecCCccchhh-HHHHHhhccccCCEEEECCEEEECHHHHHHH
Confidence            368999999999999999999999999999988865432222 2344567678999999999888877766654

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.82  E-value=6.3e-10  Score=63.19  Aligned_cols=60  Identities=17%  Similarity=0.386  Sum_probs=39.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhc----CCC--ceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC--eEeecc
Q 042938           12 PVVIFSKSECCICFSIQTLICGF----GAN--PTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ--RLVGGP   78 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~----~v~--~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g--~~iGg~   78 (106)
                      .|++|+++|||+|+.+...+++.    +-.  +..+|.|..++..+      +++ ..++|++++++  +++|..
T Consensus         5 ~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~la~------~~~-V~~~Pt~~i~~~g~~~G~~   72 (85)
T d1fo5a_           5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAM------EYG-IMAVPTIVINGDVEFIGAP   72 (85)
T ss_dssp             EEEEEECCCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCTTT------STT-TCCSSEEEETTEEECCSSS
T ss_pred             EEEEEECCCCcChHhhhhhccccccccccccccccccccccccccc------cCC-ceEeeEEEEECCcEEECCC
Confidence            46779999999999998888653    322  34455555544322      234 48999998876  556653

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=2.4e-08  Score=56.00  Aligned_cols=71  Identities=8%  Similarity=0.119  Sum_probs=57.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +.+|+.+.||+|++++-+|.++|++|+.+.|+....... .+.+...+....+|++..||..+.....+...
T Consensus         3 m~LY~~~~sp~~r~v~~~l~e~gi~~e~~~v~~~~~~~~-~~~~~~~np~g~vP~L~d~~~~l~ES~aI~~y   73 (79)
T d1ljra2           3 LELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHK-SKEFLQINSLGKLPTLKDGDFILTESSAILIY   73 (79)
T ss_dssp             CEEEECTTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGG-SHHHHTTCTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             EEEeeCCCChHHHHHHHHHHHhCCCCEEEeeeccccccC-CHHHHHhhhhcceeEEEeCCcEEEcHHHHHHH
Confidence            689999999999999999999999999999886543221 13445567778999999999988887776654

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=4.4e-08  Score=55.52  Aligned_cols=73  Identities=14%  Similarity=0.223  Sum_probs=56.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCC-chHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPN-GPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~-~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      -++|+-+.||+|.+++-+|.++|++|+.+.|+.... +....+.+.+.+...+||++..||..+.....+....
T Consensus         2 piLY~~~~S~~s~rvr~~L~ekgi~~e~~~v~l~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~i~eS~aI~~yL   75 (83)
T d1fw1a2           2 PILYSYFRSSCSWRVRIALALKGIDYKTVPINLIKDGGQQFSKDFQALNPMKQVPTLKIDGITIHQSLAIIEYL   75 (83)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCSSTTSCGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CEEEcCCCChHHHHHHHHHHHhCCCCEEEeccccccccccCCHHHHHhccCCccCEEEECCEEEecHHHHHHHH
Confidence            368999999999999999999999999998875432 2222123445566789999999999998887776654

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.77  E-value=5.4e-09  Score=61.46  Aligned_cols=56  Identities=18%  Similarity=0.248  Sum_probs=35.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc----------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEe
Q 042938           13 VVIFSKSECCICFSIQTLICGF----------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLV   75 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~----------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~i   75 (106)
                      |++|+++|||+|++++..+.+.          .+.+..+|++..++      ...+++ ..++|++++  +|+.+
T Consensus        19 i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~------l~~~~~-V~~vPTi~i~~~G~~~   86 (107)
T d1a8la2          19 ILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE------WADQYN-VMAVPKIVIQVNGEDR   86 (107)
T ss_dssp             EEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH------HHHHTT-CCSSCEEEEEETTEEE
T ss_pred             EEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccc------cccccc-cccceEEEEEeCCeEE
Confidence            4459999999999999888654          13334455554332      223334 488998754  66543

>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.74  E-value=1.7e-08  Score=57.44  Aligned_cols=71  Identities=7%  Similarity=0.006  Sum_probs=55.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +.+|+.+.||+|.+++-+|.++|++|+.+.|+...... ..+.+.+.+...++|++..||..+.....+.+.
T Consensus         2 ~kLY~~~~s~~~~~v~~~l~e~gl~~e~~~v~~~~~~~-~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~Y   72 (84)
T d1gnwa2           2 IKVFGHPASIATRRVLIALHEKNLDFELVHVELKDGEH-KKEPFLSRNPFGQVPAFEDGDLKLFESRAITQY   72 (84)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGG-GSTTGGGTCTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEEeCCCChHHHHHHHHHHHcCCCcEeecccCCcccc-cHHHHHHHhhcCcceEEEECCcEEecHHHHHHH
Confidence            67999999999999999999999999998887532211 112334556668999999999988887766654

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.74  E-value=2.8e-08  Score=59.22  Aligned_cols=68  Identities=15%  Similarity=0.244  Sum_probs=41.1

Q ss_pred             HHhhhhCCCEE--EEEcCCCchHHHHHHHHhhcCC---CceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee
Q 042938            4 VTRMVNEKPVV--IFSKSECCICFSIQTLICGFGA---NPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG   76 (106)
Q Consensus         4 ~~~~~~~~~v~--vf~~~~Cp~C~~~~~~L~~~~v---~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG   76 (106)
                      +.+..+.++++  .|+.+||++|+.+...|++..-   ....+.||.+... +   ...+++ ..++|++  |.+|+.++
T Consensus        21 ~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~-~---l~~~~~-V~~~Pt~~~~~~G~~v~   95 (114)
T d1xfla_          21 LQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELK-S---VASDWA-IQAMPTFMFLKEGKILD   95 (114)
T ss_dssp             HHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSH-H---HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             HHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccccceeEEEeeece-e---eccccc-eeeeEEEEEEECCEEEE
Confidence            44445555543  3999999999999988876521   1233344443332 2   333444 4889986  67887653

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=98.74  E-value=5.2e-08  Score=55.46  Aligned_cols=71  Identities=14%  Similarity=0.157  Sum_probs=57.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +++|+.+.||+|.+++-+|+++|++|+.+.||...... ..+.+.+.+...++|.+..||..+.....+...
T Consensus         2 ~iLY~~~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~-~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~Y   72 (85)
T d1r5aa2           2 TVLYYLPASPPCRSVLLLAKMIGVELDLKVLNIMEGEQ-LKPDFVELNPQHCIPTMDDHGLVLWESRVILSY   72 (85)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTCCEEEEECCTTTTGG-GSHHHHTTCTTCCSSEEEETTEEEECHHHHHHH
T ss_pred             EEEEcCCCCHhHHHHHHHHHHcCCCCEEEEecCCCccc-CCHHHHHHHhcCCCCEEEEcccceecHHHHHHH
Confidence            68999999999999999999999999999988654321 123445667778999999999988887776654

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.73  E-value=1.3e-08  Score=59.66  Aligned_cols=67  Identities=12%  Similarity=0.204  Sum_probs=44.1

Q ss_pred             HHHhhhhCCCE--EEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938            3 MVTRMVNEKPV--VIFSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR   73 (106)
Q Consensus         3 ~~~~~~~~~~v--~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~   73 (106)
                      .++++++.++.  +.|+++||++|..+...++++     +..+-.+|+|..+   +   ...+++ ..++|++  |.+|+
T Consensus        10 ~f~~~i~~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~---~---~~~~~~-V~~~Pt~i~~k~G~   82 (103)
T d1syra_          10 EFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVS---E---VTEKEN-ITSMPTFKVYKNGS   82 (103)
T ss_dssp             HHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTH---H---HHHHTT-CCSSSEEEEEETTE
T ss_pred             HHHHHHhCCCcEEEEEeCCcccCcccccccchhhhhcccceEEEeeccccCc---c---eeeeee-eecceEEEEEECCE
Confidence            45667776663  339999999999999888665     3334455555443   2   333344 4889985  67997


Q ss_pred             Eee
Q 042938           74 LVG   76 (106)
Q Consensus        74 ~iG   76 (106)
                      .++
T Consensus        83 ~v~   85 (103)
T d1syra_          83 SVD   85 (103)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.72  E-value=8.5e-09  Score=61.45  Aligned_cols=83  Identities=13%  Similarity=0.241  Sum_probs=47.9

Q ss_pred             HHHhhhhCCCEE--EEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938            3 MVTRMVNEKPVV--IFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR   73 (106)
Q Consensus         3 ~~~~~~~~~~v~--vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~   73 (106)
                      .++++....+.+  .|+.+|||+|+.+...|++..     +.+-.+|+|..+   +   ...+++ ..++|++  |.+|+
T Consensus        18 ~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~---~---l~~~~~-I~~~Pt~~~~k~G~   90 (113)
T d1ti3a_          18 HFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELK---A---VAEEWN-VEAMPTFIFLKDGK   90 (113)
T ss_dssp             HHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCH---H---HHHHHH-CSSTTEEEEEETTE
T ss_pred             HHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCCceEEeeeeeccc---c---ccccCe-ecccceEEEEECCE
Confidence            355556665533  399999999999998887642     333444554432   2   223334 3678876  67897


Q ss_pred             EeecchHHHhHHHhCCchHHHHh
Q 042938           74 LVGGPNQVMSLHVQNELGPLLVR   96 (106)
Q Consensus        74 ~iGg~~~~~~~~~~g~L~~~L~~   96 (106)
                      .++.+.-.    ...+|.++|++
T Consensus        91 ~v~~~~G~----~~~~l~~~i~k  109 (113)
T d1ti3a_          91 LVDKTVGA----DKDGLPTLVAK  109 (113)
T ss_dssp             EEEEEECC----CTTHHHHHHHH
T ss_pred             EEEEEcCC----CHHHHHHHHHH
Confidence            55322210    12356666654

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=98.67  E-value=1e-07  Score=54.11  Aligned_cols=71  Identities=7%  Similarity=0.128  Sum_probs=54.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +.+|+.+.||+|.+++-+|.++|++|+.+.|+...... ..+.+.+.+...+||++..||..+-....+.+.
T Consensus         1 mkLY~~~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~-~~~~~~~~nP~g~vP~L~d~~~~l~ES~aI~~y   71 (84)
T d1jlva2           1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTNLMAGEH-MKPEFLKINPQHCIPTLVDNGFALWESRAICTY   71 (84)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHTTCCCEEEECCGGGTGG-GSHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEcCCCCHHHHHHHHHHHHcCCCCEEEEecCCCCcc-CCHHHHHHhccccCCEEEECCEEEEcHHHHHHH
Confidence            46899999999999999999999999999887543211 112334567778999999999888777766554

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.6e-08  Score=59.86  Aligned_cols=58  Identities=16%  Similarity=0.260  Sum_probs=38.5

Q ss_pred             EEE-EEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeec
Q 042938           13 VVI-FSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGG   77 (106)
Q Consensus        13 v~v-f~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg   77 (106)
                      ++| |+.+||+.|+++.+.|+++     ++.|-.+|+|..++      ...+++ ..++|++  |-+|+.++.
T Consensus        24 vvv~F~a~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~------l~~~~~-v~~~Pt~~~~~~G~~v~~   89 (107)
T d1gh2a_          24 AVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG------TAATNN-ISATPTFQFFRNKVRIDQ   89 (107)
T ss_dssp             EEEEEECSSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH------HHHHTT-CCSSSEEEEEETTEEEEE
T ss_pred             EEEEEECCCCCCccccchhhhccccccccccccccccccchh------hhhhcC-ceeceEEEEEECCEEEEE
Confidence            444 9999999999999888654     34455566665432      223334 4788885  779976543

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.63  E-value=9.4e-08  Score=56.75  Aligned_cols=83  Identities=17%  Similarity=0.241  Sum_probs=48.1

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR   73 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~   73 (106)
                      +.+...+++  ++.|+.+||++|+.+...++++    +  +.+-.+|+|..+   +   ...+++. .++|++  |.+|+
T Consensus        17 l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~---~---l~~~~~v-~~~Pt~~~~~~G~   89 (112)
T d1ep7a_          17 LAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVA---A---VAEAAGI-TAMPTFHVYKDGV   89 (112)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTH---H---HHHHHTC-CBSSEEEEEETTE
T ss_pred             HHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccceEEEEEeeccccc---c---ccccccc-cCCCEEEEEECCE
Confidence            344444433  4558999999999999888654    2  445555655433   2   3334454 788885  66887


Q ss_pred             EeecchHHHhHHHhCCchHHHHhc
Q 042938           74 LVGGPNQVMSLHVQNELGPLLVRA   97 (106)
Q Consensus        74 ~iGg~~~~~~~~~~g~L~~~L~~~   97 (106)
                      .+..+.-.    ...+|.++|++.
T Consensus        90 ~v~~~~G~----~~~~l~~~i~k~  109 (112)
T d1ep7a_          90 KADDLVGA----SQDKLKALVAKH  109 (112)
T ss_dssp             EEEEEESC----CHHHHHHHHHHH
T ss_pred             EEEEEeCc----CHHHHHHHHHHH
Confidence            65432211    112466666553

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=98.62  E-value=2.7e-08  Score=58.56  Aligned_cols=63  Identities=25%  Similarity=0.422  Sum_probs=39.6

Q ss_pred             hhhCC-CE-EEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--CCeEee
Q 042938            7 MVNEK-PV-VIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--GQRLVG   76 (106)
Q Consensus         7 ~~~~~-~v-~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~g~~iG   76 (106)
                      +++.. ++ +.|+.+|||+|+++.+.|++.    +  +.+-.+|+|..++      ...+++ ..++|++++  +|+.++
T Consensus        16 v~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~------l~~~~~-I~~~Pt~~~~~~g~~v~   88 (108)
T d1thxa_          16 VLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT------TVKKYK-VEGVPALRLVKGEQILD   88 (108)
T ss_dssp             TTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH------HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             HHhCCCcEEEEEECCCCCCccccchHHHHHHHhcCCcceeceecccccHH------HHHHhc-ccCCCEEEEEECCEEEE
Confidence            33433 44 458999999999999888654    3  3344555554332      223334 488998754  887554

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.3e-08  Score=58.74  Aligned_cols=67  Identities=19%  Similarity=0.309  Sum_probs=42.0

Q ss_pred             HHHhhhhC---CCEEE-EEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EEC
Q 042938            3 MVTRMVNE---KPVVI-FSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIG   71 (106)
Q Consensus         3 ~~~~~~~~---~~v~v-f~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~   71 (106)
                      .+++.++.   ..+++ |+.+||++|+.+...|.+.     ++.+-.+|+|..++      ...+++ ..++|++  |-|
T Consensus        10 ~f~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~------~~~~~~-V~~~Pt~~~~~~   82 (105)
T d2ifqa1          10 AFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD------VASECE-VKCMPTFQFFKK   82 (105)
T ss_dssp             HHHHHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH------HHHHTT-CCBSSEEEEEET
T ss_pred             HHHHHHHhCCCCEEEEEEEcCCccchhhhhhhhhhhccccccceeeecccccCHh------HHHHcC-ceEEEEEEEEEC
Confidence            35555543   23444 9999999999999888665     23334455554332      233334 4889986  678


Q ss_pred             CeEee
Q 042938           72 QRLVG   76 (106)
Q Consensus        72 g~~iG   76 (106)
                      |+.++
T Consensus        83 G~~v~   87 (105)
T d2ifqa1          83 GQKVG   87 (105)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            97654

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=7.8e-08  Score=59.38  Aligned_cols=66  Identities=12%  Similarity=0.223  Sum_probs=45.8

Q ss_pred             HHHhhhhCC--C-E-EEEEcCCCchHHHHHHHHhhcC------CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EE
Q 042938            3 MVTRMVNEK--P-V-VIFSKSECCICFSIQTLICGFG------ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FI   70 (106)
Q Consensus         3 ~~~~~~~~~--~-v-~vf~~~~Cp~C~~~~~~L~~~~------v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv   70 (106)
                      .+.+++...  + | +.|+.+||+.|.++.+.|.++.      +.+-.+|+|..++..+      .++ ..++|++  |.
T Consensus        12 ~~dq~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~la~------~~~-I~~~PT~~~f~   84 (137)
T d1qgva_          12 QVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNK------MYE-LYDPCTVMFFF   84 (137)
T ss_dssp             HHHHHHHTCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTTTT------SSC-SCSSCEEEEEE
T ss_pred             HHHHHHHhCCCCEEEEEEECCCCccchhcChHHHHHHHHhhccceEEEeeccccchhhh------hcC-eeeEEEEEEEe
Confidence            356666533  3 3 3399999999999999997652      4566778887775433      223 4788886  78


Q ss_pred             CCeEe
Q 042938           71 GQRLV   75 (106)
Q Consensus        71 ~g~~i   75 (106)
                      +|+.+
T Consensus        85 ~g~~i   89 (137)
T d1qgva_          85 RNKHI   89 (137)
T ss_dssp             TTEEE
T ss_pred             CCcEE
Confidence            99876

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=98.53  E-value=1.7e-07  Score=54.70  Aligned_cols=66  Identities=20%  Similarity=0.376  Sum_probs=43.1

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc----C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCe
Q 042938            4 VTRMVNEKP--VVIFSKSECCICFSIQTLICGF----G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQR   73 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~   73 (106)
                      ++++++.++  ++.|+.+||++|..+...+.+.    +  +.+-.+|++..++      ...+++ ..++|++  |.+|+
T Consensus        10 f~~~i~~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~------~~~~~~-V~~~Pt~~~~~~G~   82 (105)
T d1nw2a_          10 FQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE------TTSQFG-IMSIPTLILFKGGE   82 (105)
T ss_dssp             HHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH------HHHHTT-CCBSSEEEEEETTE
T ss_pred             HHHHHhCCCcEEEEEECCCCCCcccccchhhhhhhhcCCceEEEEEECCCCcc------cHHHCC-cceeeEEEEEECCE
Confidence            556666554  4559999999999998888664    2  4455566655432      222334 4788886  67897


Q ss_pred             Eee
Q 042938           74 LVG   76 (106)
Q Consensus        74 ~iG   76 (106)
                      .++
T Consensus        83 ~~~   85 (105)
T d1nw2a_          83 PVK   85 (105)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.47  E-value=2.2e-07  Score=54.36  Aligned_cols=58  Identities=21%  Similarity=0.382  Sum_probs=36.9

Q ss_pred             CEE-EEEcCCCchHHHHHHHHhhc----CCC--ceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee
Q 042938           12 PVV-IFSKSECCICFSIQTLICGF----GAN--PTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG   76 (106)
Q Consensus        12 ~v~-vf~~~~Cp~C~~~~~~L~~~----~v~--~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG   76 (106)
                      +++ .|+.+||++|.+....+.+.    +-.  +..+|+|..+   +   ...+++. .++|++  |.+|+.++
T Consensus        21 pvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~---~---l~~~~~V-~~~Pt~~~~~~G~~v~   87 (107)
T d1dbya_          21 PVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESP---N---VASEYGI-RSIPTIMVFKGGKKCE   87 (107)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH---H---HHHHHTC-CSSCEEEEESSSSEEE
T ss_pred             cEEEEEECCCCCCccccChHHHHHHHhhcccceEEEEecccch---h---HHHHhcc-cceEEEEEEECCeEEE
Confidence            455 49999999999998887554    333  3445555432   2   2233454 788886  56786554

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=98.43  E-value=5.5e-07  Score=53.75  Aligned_cols=47  Identities=13%  Similarity=0.224  Sum_probs=39.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCC-CchHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIP-NGPQIERALQQL   59 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~-~~~~~~~~l~~~   59 (106)
                      |++|+.++|.-|+++.++|++.|++|+.+|+-.++ +..++.+.+...
T Consensus         2 i~ly~~~~C~~~rka~~~L~~~~i~~~~~d~~~~p~s~~eL~~ll~~~   49 (114)
T d1z3ea1           2 VTLYTSPSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRMT   49 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHTC
T ss_pred             EEEEcCCCCHHHHHHHHHHHHCCCCeEEEeeeccCCCHHHHHHHHHHh
Confidence            68999999999999999999999999999987754 555677666543

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=6.5e-07  Score=52.30  Aligned_cols=63  Identities=17%  Similarity=0.329  Sum_probs=39.0

Q ss_pred             hhhCCC-E-EEEEcCCCchHHHHHHHHhhc----CCCc--eEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee
Q 042938            7 MVNEKP-V-VIFSKSECCICFSIQTLICGF----GANP--TVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG   76 (106)
Q Consensus         7 ~~~~~~-v-~vf~~~~Cp~C~~~~~~L~~~----~v~~--~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG   76 (106)
                      +++..+ + +.|+.+||++|+.....+.+.    +-.+  ..+|+|.++.      ...+++ ..++|++  |.+|+.++
T Consensus        16 v~~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~------l~~~~~-v~~~PT~~~~~~G~~v~   88 (108)
T d2trxa_          16 VLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG------TAPKYG-IRGIPTLLLFKNGEVAA   88 (108)
T ss_dssp             TTTCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT------HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             HHhCCCcEEEEEECCCCCCccccCcHHHHHHHHhhcceeeeeccccchhh------HHHHhC-CCcEEEEEEEECCEEEE
Confidence            344444 4 449999999999888777543    3344  4456665443      222334 4788886  56887543

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=98.39  E-value=2.5e-06  Score=49.38  Aligned_cols=61  Identities=25%  Similarity=0.300  Sum_probs=38.5

Q ss_pred             CCE-EEEEcCCCchHHHHHHHHhhc----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee
Q 042938           11 KPV-VIFSKSECCICFSIQTLICGF----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG   76 (106)
Q Consensus        11 ~~v-~vf~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG   76 (106)
                      .++ +.|+.+|||+|.++...+.+.    +-....+.++.+... +   ...+++ ..++|++  |.+|+.++
T Consensus        18 ~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~-~---l~~~~~-V~~~Pt~~~~~~G~~v~   85 (104)
T d1fb6a_          18 VPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAP-G---IATQYN-IRSIPTVLFFKNGERKE   85 (104)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCH-H---HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             CcEEEEEEcCccCCccccCchhHHHHHhhcCccceeEEecccch-h---hhhhcc-eeeeeEEEEEEcCeEEE
Confidence            345 449999999999999888665    333444445444332 2   223334 4888886  67887554

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=98.35  E-value=2.7e-06  Score=50.21  Aligned_cols=68  Identities=21%  Similarity=0.304  Sum_probs=41.0

Q ss_pred             HHhhhhC---CCEEE-EEcCCCchHHHHHHHHhhcC---CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeE
Q 042938            4 VTRMVNE---KPVVI-FSKSECCICFSIQTLICGFG---ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRL   74 (106)
Q Consensus         4 ~~~~~~~---~~v~v-f~~~~Cp~C~~~~~~L~~~~---v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~   74 (106)
                      +.+.+..   .+++| |+.+||++|+.+...|+++.   .....+.+|.+.+..+   ...+++. .++|++  |-+|+.
T Consensus        16 f~~~l~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~---l~~~~~V-~~~Pt~~~~k~G~~   91 (112)
T d1f9ma_          16 FWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKT---LAKELGI-RVVPTFKILKENSV   91 (112)
T ss_dssp             HHHHHHTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHH---HHHHHCC-SSSSEEEEEETTEE
T ss_pred             HHHHHHHcCCCEEEEEEEcCCCcchHHHHHHHhhhccccccceeecccccccchh---hHhheee-ccCCEEEEEECCEE
Confidence            4455533   34444 89999999999998887642   1233444444333333   3334454 788886  568876


Q ss_pred             e
Q 042938           75 V   75 (106)
Q Consensus        75 i   75 (106)
                      +
T Consensus        92 v   92 (112)
T d1f9ma_          92 V   92 (112)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.29  E-value=1.5e-06  Score=48.44  Aligned_cols=55  Identities=16%  Similarity=0.390  Sum_probs=41.0

Q ss_pred             CEEEEEcCCCchHHHH----HHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEe
Q 042938           12 PVVIFSKSECCICFSI----QTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLV   75 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~----~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~i   75 (106)
                      +|.|| .++|+.|.++    ++.+.++|++.+...++   +..+   .. +++. .++|.+.|||+.+
T Consensus         3 ~IkVl-g~gC~~C~~~~~~v~~a~~e~gi~a~v~kv~---d~~e---i~-~ygV-mstPalvIdg~vv   61 (77)
T d1iloa_           3 KIQIY-GTGCANCQMLEKNAREAVKELGIDAEFEKIK---EMDQ---IL-EAGL-TALPGLAVDGELK   61 (77)
T ss_dssp             EEEEE-CSSSSTTHHHHHHHHHHHHHTTCCEEEEEEC---SHHH---HH-HHTC-SSSSCEEETTEEE
T ss_pred             EEEEe-CCCCccHHHHHHHHHHHHHHcCCceEEEEeC---CHHH---HH-HcCC-cCCCEEEECCEEE
Confidence            57788 5899999854    56678899998887775   3333   33 3464 9999999999754

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=1.3e-06  Score=52.02  Aligned_cols=64  Identities=9%  Similarity=0.127  Sum_probs=40.7

Q ss_pred             HHHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE--C
Q 042938            3 MVTRMVNEKP--VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI--G   71 (106)
Q Consensus         3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv--~   71 (106)
                      .+.++++.++  ++.|+.+||++|+++...+++.       ++.+-.+|++..+   +   ...+++ ..++|++++  +
T Consensus        19 ~f~~~i~~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~---~---l~~~~~-v~~~Pti~~f~~   91 (119)
T d2b5ea4          19 SFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ---D---LCMEHN-IPGFPSLKIFKN   91 (119)
T ss_dssp             THHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH---H---HHHHTT-CCSSSEEEEEET
T ss_pred             HHHHHHhcCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccchH---H---HHHHhc-cccCCeEEEEEC
Confidence            3566676665  5669999999999988877553       2334445555332   2   333444 488999854  7


Q ss_pred             Ce
Q 042938           72 QR   73 (106)
Q Consensus        72 g~   73 (106)
                      |+
T Consensus        92 g~   93 (119)
T d2b5ea4          92 SD   93 (119)
T ss_dssp             TC
T ss_pred             CE
Confidence            74

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.18  E-value=1.7e-06  Score=51.46  Aligned_cols=48  Identities=10%  Similarity=0.097  Sum_probs=38.9

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEccc-CCCchHHHHHHHHhC
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQ-IPNGPQIERALQQLG   60 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~-~~~~~~~~~~l~~~~   60 (106)
                      +++|+.|.|.-|++++++|++.|++|+.+|+-. .....++.+.+...+
T Consensus         2 ~~iY~~p~Cs~srka~~~L~~~~i~~~~idy~k~pls~~eL~~ll~~~g   50 (114)
T d1rw1a_           2 YVLYGIKACDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHG   50 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHC
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCeEEEEccccCCCHHHHHHHHHhcc
Confidence            789999999999999999999999999998755 344455666655543

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=2.1e-06  Score=53.45  Aligned_cols=22  Identities=14%  Similarity=0.668  Sum_probs=18.1

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      |++|+-+.||||+++...+.++
T Consensus        30 Iv~FsD~~CpyC~~~~~~l~~~   51 (156)
T d1eeja1          30 ITVFTDITCGYCHKLHEQMADY   51 (156)
T ss_dssp             EEEEECTTCHHHHHHHTTHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHh
Confidence            6789999999999997666544

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.15  E-value=1.7e-05  Score=46.26  Aligned_cols=56  Identities=16%  Similarity=0.206  Sum_probs=35.8

Q ss_pred             EEcCCCchHHHHHHHHhhc----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEee
Q 042938           16 FSKSECCICFSIQTLICGF----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVG   76 (106)
Q Consensus        16 f~~~~Cp~C~~~~~~L~~~----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iG   76 (106)
                      |+.+||++|++....+.++    +-....+.|+.++.. +   ...+++. .++|++  |-+|+.+.
T Consensus        32 f~a~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~-~---l~~~~~V-~~~Pt~~~~~~G~~v~   93 (111)
T d1xwaa_          32 FFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECE-D---IAMEYNI-SSMPTFVFLKNGVKVE   93 (111)
T ss_dssp             EECTTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCH-H---HHHHTTC-CSSSEEEEEETTEEEE
T ss_pred             EECCcccCccccchhHHHHhhhcccceEEEEEEeecCc-c---hhhcCCC-ccccEEEEEECCEEEE
Confidence            9999999999999888665    222344445444332 2   3334454 788886  56886543

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5e-07  Score=54.18  Aligned_cols=77  Identities=13%  Similarity=0.158  Sum_probs=42.4

Q ss_pred             hHHHhhhhCC---CE-EEEEc-------CCCchHHHHHHHHhhc----C--CCceEEEcccCCCch-HHHHHHHHhCCCC
Q 042938            2 DMVTRMVNEK---PV-VIFSK-------SECCICFSIQTLICGF----G--ANPTVYELDQIPNGP-QIERALQQLGCQP   63 (106)
Q Consensus         2 ~~~~~~~~~~---~v-~vf~~-------~~Cp~C~~~~~~L~~~----~--v~~~~v~vd~~~~~~-~~~~~l~~~~~~~   63 (106)
                      +.+.+++..+   .| +.|+.       ||||+|+++...+.++    +  +.+-.+|++..+... .......+++ ..
T Consensus        10 ~e~~~~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~-V~   88 (119)
T d1woua_          10 EEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLK-VT   88 (119)
T ss_dssp             HHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHC-CC
T ss_pred             HHHHHHHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCC-eE
Confidence            3455555543   34 44555       5999999999998664    2  334456665422100 0111333445 48


Q ss_pred             CccEEE--ECCeEeecch
Q 042938           64 TVPAVF--IGQRLVGGPN   79 (106)
Q Consensus        64 tvP~if--v~g~~iGg~~   79 (106)
                      ++|+++  -+|+.+.+.+
T Consensus        89 ~iPT~i~~~~g~~l~~~~  106 (119)
T d1woua_          89 AVPTLLKYGTPQKLVESE  106 (119)
T ss_dssp             SSSEEEETTSSCEEEGGG
T ss_pred             EEEEEEEEECCeEEeeee
Confidence            899964  3566665543

>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.1e-05  Score=43.09  Aligned_cols=69  Identities=4%  Similarity=-0.123  Sum_probs=54.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhHH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSLH   85 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~~   85 (106)
                      ++.+|+-+.++.|..++-+|...|++|+.+.++....     ......+...++|.+..||..+.....+....
T Consensus         2 ~~kL~yf~~~~~~~~vRl~L~~~gi~~e~~~~~~~~~-----~~~~~~~p~g~vP~L~~~g~~l~qS~AI~~yL   70 (74)
T d2cvda2           2 NYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADW-----PEIKSTLPFGKIPILEVDGLTLHQSLAIARYL   70 (74)
T ss_dssp             CEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGGGH-----HHHHTTSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCCEecccccccc-----hhhcccCCCCCcCEEEECCEEEEcHHHHHHHH
Confidence            5678888999999999999999999999988875421     12333455678999999999888877666543

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.3e-06  Score=50.68  Aligned_cols=64  Identities=16%  Similarity=0.212  Sum_probs=39.7

Q ss_pred             HHHhhhhCCC--EEEEEcCCCchHHHHHHHHhhc-------C--CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--E
Q 042938            3 MVTRMVNEKP--VVIFSKSECCICFSIQTLICGF-------G--ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--F   69 (106)
Q Consensus         3 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-------~--v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--f   69 (106)
                      .++++++.++  ++.|+.+||++|+++...+.+.       +  +.+-.+|++..+...+      +++. ..+|++  |
T Consensus        16 ~f~~~l~~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~------~~~i-~~~Pt~~~~   88 (120)
T d1meka_          16 NFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQ------QYGV-RGYPTIKFF   88 (120)
T ss_dssp             THHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHH------HHTC-CSSSEEEEE
T ss_pred             HHHHHHhcCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccchhHHH------HhCC-ccCCeEEEE
Confidence            3556666555  4558999999999887666442       1  3445566666554322      2343 778986  4


Q ss_pred             ECCe
Q 042938           70 IGQR   73 (106)
Q Consensus        70 v~g~   73 (106)
                      .+|+
T Consensus        89 ~~G~   92 (120)
T d1meka_          89 RNGD   92 (120)
T ss_dssp             ESSC
T ss_pred             ECCe
Confidence            5764

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=2.1e-06  Score=56.35  Aligned_cols=81  Identities=12%  Similarity=0.176  Sum_probs=52.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecchHHHhH-
Q 042938           13 VVIFSKSECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGPNQVMSL-   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~~~~~~~-   84 (106)
                      |+-|+.+|||.|..+...|..+.     +.|-.++.+..+...       .++ ...+|++  |.||+.++.+-.+..+ 
T Consensus       124 vvhfy~~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~~~~-------~~~-i~~lPtl~~yk~G~~v~~~vg~~~~~  195 (217)
T d2trcp_         124 VVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGD-------RFS-SDVLPTLLVYKGGELISNFISVAEQF  195 (217)
T ss_dssp             EEEEECTTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHTCST-------TSC-GGGCSEEEEEETTEEEEEETTGGGGS
T ss_pred             EEEEEcCCCCChhhhhhhHHHHhhhcccceEEEEccccchhHH-------hCC-CCCCCeEEEEECCEEEEEEECccccc
Confidence            34499999999999999998764     334455555433221       122 3678876  7899887744333222 


Q ss_pred             ---HHhCCchHHHHhcCcee
Q 042938           85 ---HVQNELGPLLVRAGAIW  101 (106)
Q Consensus        85 ---~~~g~L~~~L~~~g~~~  101 (106)
                         .....|+.+|.+.|++.
T Consensus       196 g~~~~~~~lE~~L~~~g~l~  215 (217)
T d2trcp_         196 AEDFFAADVESFLNEYGLLP  215 (217)
T ss_dssp             CSSCCHHHHHHHHHTTTCSC
T ss_pred             cccCCHHHHHHHHHHcCCCC
Confidence               12235888899999863

>d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1e-05  Score=44.51  Aligned_cols=70  Identities=11%  Similarity=0.058  Sum_probs=53.9

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +.++|+-+.++.|..++-+|...|++|+.+.++..+....   .....+....+|++..||..|.....+...
T Consensus         2 ~~~L~yf~~~g~~~~vr~~L~~~gi~ye~~~v~~~~~~~~---~~~~~~p~g~vP~L~~~g~~i~eS~aI~~y   71 (77)
T d2a2ra2           2 PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETWQEG---SLKASCLYGQLPKFQDGDLTLYQSNTILRH   71 (77)
T ss_dssp             SEEEEECSSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHS---HHHHHSTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             CEEEEEcCCchhHHHHHHHHHHcCCCcEEEEecccccccc---cccccCCCCCCCEEEECCEeeecHHHHHHH
Confidence            5778888889999999999999999999998876432211   222234456899999999999888776654

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.03  E-value=4.8e-06  Score=51.49  Aligned_cols=22  Identities=18%  Similarity=0.549  Sum_probs=18.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      |++|+-+.||||+++.+.+..+
T Consensus        30 I~~FsD~~CPyC~~~~~~l~~l   51 (150)
T d1t3ba1          30 VTVFMDITCHYCHLLHQQLKEY   51 (150)
T ss_dssp             EEEEECTTCHHHHHHHTTHHHH
T ss_pred             EEEEECCCCHHHHHHhHHHHHH
Confidence            7889999999999987755443

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=4.7e-05  Score=44.48  Aligned_cols=60  Identities=18%  Similarity=0.295  Sum_probs=34.5

Q ss_pred             CCEE-EEEcCCCchHHHHHHHHhh------cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE-EC
Q 042938           11 KPVV-IFSKSECCICFSIQTLICG------FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF-IG   71 (106)
Q Consensus        11 ~~v~-vf~~~~Cp~C~~~~~~L~~------~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if-v~   71 (106)
                      .+|+ .|+.+|||+|+.....+..      ..-.+..+.++...+.....+...+++. ..+|+++ ++
T Consensus        23 K~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-~~~Pt~~~~~   90 (117)
T d2fwha1          23 KPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNV-LGLPTILFFD   90 (117)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTC-CSSSEEEEEC
T ss_pred             CeEEEEEecccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhheh-hhceEEEEEe
Confidence            3554 4899999999998765421      2223444444433333333345555554 7888874 43

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.89  E-value=9e-07  Score=53.09  Aligned_cols=58  Identities=16%  Similarity=0.058  Sum_probs=29.2

Q ss_pred             EEcCCCchHHHHHHHHhhc-----CCCceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecc
Q 042938           16 FSKSECCICFSIQTLICGF-----GANPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGP   78 (106)
Q Consensus        16 f~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~   78 (106)
                      |+.+|||.|+.+...|.++     +..+....||.+.    -.+...+++ ..++|++  |.+|+.++.+
T Consensus        37 f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~----~~~l~~~~~-V~~~Pt~~~~~~G~~v~~~  101 (119)
T d2es7a1          37 SDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ----SEAIGDRFN-VRRFPATLVFTDGKLRGAL  101 (119)
T ss_dssp             CCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHH----HHHHHHTTT-CCSSSEEEEESCC----CE
T ss_pred             ecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCC----CHHHHHhcC-cCcceEEEEEEcCeEEEEe
Confidence            5678999999999888775     3344444444321    112333334 4889986  5688766543

>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Arsenate reductase ArsC
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=2e-05  Score=48.26  Aligned_cols=49  Identities=16%  Similarity=0.378  Sum_probs=39.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccC-CCchHHHHHHHHhC
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQI-PNGPQIERALQQLG   60 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~-~~~~~~~~~l~~~~   60 (106)
                      .|+||..|.|.-|+++.++|++.|++|+.+|+-.. .+..++.+.+...+
T Consensus         1 ni~iY~~p~Cs~srkal~~L~~~~i~~~~idy~k~pls~~eL~~ll~~lg   50 (138)
T d1j9ba_           1 NITIYHNPACGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIADMG   50 (138)
T ss_dssp             CCEEECCTTCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHHHHHT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCCeEEEeeccCCCCHHHHHHHHHHcc
Confidence            37899999999999999999999999999987665 44455666665544

>d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Pf GST
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.78  E-value=0.00037  Score=38.59  Aligned_cols=74  Identities=11%  Similarity=0.078  Sum_probs=55.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHH--hCCCCCccEEEECCeEeecchHHHhH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQ--LGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~--~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      .++++|+-+.-+.|..++-+|...|++|+.+.++..+....-.+....  .+....+|.+..||..+.....+...
T Consensus         3 ~~i~L~Y~~~~gr~e~irl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~p~g~lP~l~~~g~~l~eS~AI~~y   78 (85)
T d1okta2           3 DNIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIVRY   78 (85)
T ss_dssp             CCEEEEEESSSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHHHHH
T ss_pred             CCeEEEEcCCchhhHHHHHHHHHcCCCceEEEEcccccchhhhhhhhhcccccCCCCCeeecCCCEEecHHHHHHH
Confidence            468887777788999999999999999999988876554332222222  23456899999999988887766554

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=9.6e-06  Score=49.25  Aligned_cols=54  Identities=15%  Similarity=0.281  Sum_probs=36.3

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHhCCCCCccEEE--ECCe
Q 042938           13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQLGCQPTVPAVF--IGQR   73 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~if--v~g~   73 (106)
                      ++.|+.+||++|+++...+.+.       +..+...++|...+...      .++ ..++|+++  -+|+
T Consensus        34 lV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~~~------~~~-v~~~Ptl~~f~~g~   96 (140)
T d2b5ea1          34 LVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR------GVV-IEGYPTIVLYPGGK   96 (140)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS------SCC-CSSSSEEEEECCTT
T ss_pred             EEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeeccchhcc------ccc-cccCCeEEEEECCE
Confidence            5679999999999998887654       34566667776544221      223 47899874  3664

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.74  E-value=1.8e-06  Score=54.12  Aligned_cols=35  Identities=6%  Similarity=-0.014  Sum_probs=26.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhc-----CCCceEEEcccC
Q 042938           12 PVVIFSKSECCICFSIQTLICGF-----GANPTVYELDQI   46 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~v~vd~~   46 (106)
                      .+++|+.+|||+|.+....|.++     ++.+..+++|.+
T Consensus        57 ~~l~~~~tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~   96 (166)
T d1z6na1          57 RLLVAGEMWCPDCQINLAALDFAQRLQPNIELAIISKGRA   96 (166)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHH
T ss_pred             EEEEEEeCcCccHHHHHHHHHHHHHHCCCCcEEEEECccC
Confidence            47889999999999999888665     244555666543

>d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=3.5e-05  Score=42.65  Aligned_cols=71  Identities=15%  Similarity=0.233  Sum_probs=48.0

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLH   85 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~   85 (106)
                      -+|+.+..+ +.+++-+|.++|++|+.+.++.........+.+.+.+....+|++.. ||..+.....+....
T Consensus         2 kLY~~p~s~-s~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~ES~aI~~yL   73 (80)
T d1n2aa2           2 KLFYKPGAC-SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYL   73 (80)
T ss_dssp             EEEECTTST-THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             EEEeCCCcc-HHHHHHHHHHhCCCCEEEEEcCCCCcccCCHHHHHHhcccceeeEEecCCCEEcCHHHHHHHH
Confidence            357777665 78999999999999998877653321111112334566689999986 567777777666543

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=2e-06  Score=52.44  Aligned_cols=59  Identities=19%  Similarity=0.055  Sum_probs=36.8

Q ss_pred             EEcCCCchHHHHHHHHhhcCC-----CceEEEcccCCCchHHHHHHHHhCCCCCccEE--EECCeEeecch
Q 042938           16 FSKSECCICFSIQTLICGFGA-----NPTVYELDQIPNGPQIERALQQLGCQPTVPAV--FIGQRLVGGPN   79 (106)
Q Consensus        16 f~~~~Cp~C~~~~~~L~~~~v-----~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i--fv~g~~iGg~~   79 (106)
                      |+.+|||+|.++..+|.++.-     .+....||.+.+    .+....++ ..++|++  |-||+.++.+.
T Consensus        43 f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~----~~la~~~~-V~~~PT~~~~~~G~~v~~~~  108 (132)
T d2hfda1          43 SDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS----EAIGDRFG-VFRFPATLVFTGGNYRGVLN  108 (132)
T ss_dssp             SCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHH----HHHHHHHT-CCSCCEEEEEETTEEEEEEC
T ss_pred             eeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCC----HHHHHhhc-cCcceeEEEEEcCcEeeeec
Confidence            578999999999888877532     233333443211    12333445 4888976  56998877553

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.65  E-value=2e-05  Score=46.86  Aligned_cols=68  Identities=12%  Similarity=0.093  Sum_probs=37.6

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHH-----HHHHHHhhcCCC--ceEEEcccCCCchHHHHHHHHhCCC-CCccEEE--EC
Q 042938            4 VTRMVNEKP--VVIFSKSECCICF-----SIQTLICGFGAN--PTVYELDQIPNGPQIERALQQLGCQ-PTVPAVF--IG   71 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~-----~~~~~L~~~~v~--~~~v~vd~~~~~~~~~~~l~~~~~~-~tvP~if--v~   71 (106)
                      +.+.+...+  ++.|+.|||++|+     ++.+-+.+.+-.  +-.+|++...+... ++...+++.. .++|+++  .+
T Consensus        12 Fd~~v~~~~~~lV~Fya~wC~~ck~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n-~~l~~~~~i~~~~~PTi~~f~~   90 (122)
T d2c0ga2          12 FEKTVERFPYSVVKFDIASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELEN-KALGDRYKVDDKNFPSIFLFKG   90 (122)
T ss_dssp             HHHHHTTSSEEEEEEEESSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTT-HHHHHHTTCCTTSCCEEEEESS
T ss_pred             HHHHHhcCCcEEEEEECCCCCcccCHHHHHHHHHHHHhCCCeEEEeccccccccccC-HHHHHHhhcccCCCCcEEEEeC
Confidence            567777766  4669999999996     222333333333  44566655433221 1233344332 5799984  45


Q ss_pred             C
Q 042938           72 Q   72 (106)
Q Consensus        72 g   72 (106)
                      |
T Consensus        91 g   91 (122)
T d2c0ga2          91 N   91 (122)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=97.64  E-value=0.00012  Score=40.05  Aligned_cols=70  Identities=10%  Similarity=-0.084  Sum_probs=49.2

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      ..+|+-+..+.|..++-+|...|++|+.+.++..+....  ..........++|++..||..+.....+...
T Consensus         2 pkL~yf~~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~--~~~~~~~p~g~lPvL~~~g~~l~eS~AI~~y   71 (77)
T d1gula2           2 PKLHYPNGRGRMESVRWVLAAAGVEFDEEFLETKEQLYK--LQDGNHLLFQQVPMVEIDGMKLVQTRSILHY   71 (77)
T ss_dssp             CEEEEESSCTTTHHHHHHHHHTTCCCEEEEECSHHHHHH--HHHTTCSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEEcCCcchHHHHHHHHHHcCCCceEEeeccccccch--hhhcccCCCCCCCEEEECCEeeecHHHHHHH
Confidence            356666777999999999999999999887764322111  1111123346899999999988877766554

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=3.9e-05  Score=46.05  Aligned_cols=44  Identities=20%  Similarity=0.328  Sum_probs=28.8

Q ss_pred             HHhhhhC-CCE-EEEEcCCCchHHHHHHHHhh------cCCCceEEEcccCC
Q 042938            4 VTRMVNE-KPV-VIFSKSECCICFSIQTLICG------FGANPTVYELDQIP   47 (106)
Q Consensus         4 ~~~~~~~-~~v-~vf~~~~Cp~C~~~~~~L~~------~~v~~~~v~vd~~~   47 (106)
                      +..+.++ .+| +.|+.+|||+|++....+.+      .+..|..+.+|...
T Consensus        18 l~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~   69 (135)
T d1sena_          18 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEE   69 (135)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGG
T ss_pred             HHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCc
Confidence            3333433 344 55999999999999887633      23567777776543

>d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Sphingomonas paucimobilis [TaxId: 13689]

Probab=97.58  E-value=9e-05  Score=40.96  Aligned_cols=71  Identities=11%  Similarity=0.175  Sum_probs=47.7

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE-CCeEeecchHHHhHH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI-GQRLVGGPNQVMSLH   85 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv-~g~~iGg~~~~~~~~   85 (106)
                      .+|+.+.-+ +.+++-+|.+.|++|+.+.++.........+.+.+.+...+||++.. ||..+.....+....
T Consensus         2 kLY~~p~s~-s~~v~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~d~g~~l~ES~aI~~yL   73 (80)
T d1f2ea2           2 KLFISPGAC-SLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYI   73 (80)
T ss_dssp             EEEECTTST-THHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             EEecCCCch-HHHHHHHHHHcCCCCEEEEEecCCCcccCCHHHHHHhhccccceEEECCCeEEecHHHHHHHH
Confidence            356665532 57899999999999999888754332211123344466689999986 578888777666543

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.57  E-value=0.00016  Score=43.22  Aligned_cols=51  Identities=12%  Similarity=0.188  Sum_probs=30.5

Q ss_pred             CCCE-EEEEcCCCchHHHHHHHHhhcC---CCceEEEcccCCCchHHHHHHHHhC
Q 042938           10 EKPV-VIFSKSECCICFSIQTLICGFG---ANPTVYELDQIPNGPQIERALQQLG   60 (106)
Q Consensus        10 ~~~v-~vf~~~~Cp~C~~~~~~L~~~~---v~~~~v~vd~~~~~~~~~~~l~~~~   60 (106)
                      .+++ +.|+.+|||+|.+....|.+..   -....+-|..+++...+++++.+++
T Consensus        24 Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~   78 (134)
T d1lu4a_          24 GKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYN   78 (134)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHT
T ss_pred             CCEEEEEEeecccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhc
Confidence            3444 4488999999998877775542   2233444444444455666665553

>d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

Probab=97.57  E-value=4e-05  Score=42.23  Aligned_cols=72  Identities=14%  Similarity=-0.004  Sum_probs=50.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      .+..+|+-+..+.|..++-+|...|++|+.+.++.......  ...........+|++..||..+.....+...
T Consensus         2 ~K~kL~yf~~~~~~~~vR~~L~~~gi~ye~~~~~~~~~~~~--~~~~~~~p~g~lPvL~~~g~~l~eS~AI~rY   73 (78)
T d1b48a2           2 AKPKLYYFNGRGRMESIRWLLAAAGVEFEEEFLETREQYEK--MQKDGHLLFGQVPLVEIDGMMLTQTRAILSY   73 (78)
T ss_dssp             CCCEEEBCSSCTTTHHHHHHHHHHTCCCCCCBCCCHHHHHH--HHTTTCSSSSCSCEEEETTEEECCHHHHHHH
T ss_pred             CCcEEEEcCCchHHHHHHHHHHHcCCCcEEEEEcchhhhcc--hhhcccccCCCCCEEEeCCeEEECHHHHHHH
Confidence            45678887888999999999999999999877764321111  1111113345799999999988877666554

>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: YuzD-like
domain: Hypothetical protein SA0798
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.49  E-value=0.00025  Score=41.14  Aligned_cols=77  Identities=13%  Similarity=0.238  Sum_probs=47.9

Q ss_pred             hCCCEEEEEcCC-CchHH------HHHHHHhh--------cCCCceEEEcccCCCc--hHHHHHHHHh-CCCCCccEEEE
Q 042938            9 NEKPVVIFSKSE-CCICF------SIQTLICG--------FGANPTVYELDQIPNG--PQIERALQQL-GCQPTVPAVFI   70 (106)
Q Consensus         9 ~~~~v~vf~~~~-Cp~C~------~~~~~L~~--------~~v~~~~v~vd~~~~~--~~~~~~l~~~-~~~~tvP~ifv   70 (106)
                      ++..|+||+..- |+.|.      ..-.+|+.        ..+.|+++||...++.  .+-+++..+. .-..-.|.|.+
T Consensus         6 ~~v~i~VYGA~~iCASCV~aPSSkeTyEWLqaal~RKyp~~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede~FYPlV~i   85 (111)
T d1xg8a_           6 QSNAVVVYGADVICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITM   85 (111)
T ss_dssp             SCEEEEEEECSSCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEEE
T ss_pred             ceeEEEEEcccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCcccccHHHHHHHHHHhhccceeeEEEE
Confidence            455689999855 88885      44455533        2455778888766542  2333344444 33456799999


Q ss_pred             CCeEee-cchHHHhHH
Q 042938           71 GQRLVG-GPNQVMSLH   85 (106)
Q Consensus        71 ~g~~iG-g~~~~~~~~   85 (106)
                      +|+.|| |+-.++..+
T Consensus        86 ~~eiVaEGnp~LK~I~  101 (111)
T d1xg8a_          86 NDEYVADGYIQTKQIT  101 (111)
T ss_dssp             TTEEEEESSCCHHHHH
T ss_pred             CCEEeecCCccHHHHH
Confidence            999998 555555544

>d1pmta2 c.47.1.5 (A:1-80) Class beta GST {Proteus mirabilis [TaxId: 584]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Proteus mirabilis [TaxId: 584]

Probab=97.44  E-value=0.00011  Score=40.62  Aligned_cols=71  Identities=7%  Similarity=0.141  Sum_probs=47.7

Q ss_pred             EEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHhHH
Q 042938           14 VIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMSLH   85 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~~~   85 (106)
                      -+|+.++ +.+.+++-+|.++|++|+.+.|+.......-.+.+.+.+...+||++.++ |..+-....+....
T Consensus         2 kLY~~p~-s~s~~vr~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~ES~aI~~yL   73 (80)
T d1pmta2           2 KLYYTPG-SCSLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYL   73 (80)
T ss_dssp             EEEECTT-STTHHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             EEEeCCC-ChHHHHHHHHHHhCCCCEEEEEecCCCcccCCHHHHHhcccccCCceecCCCcEEeCHHHHHHHH
Confidence            3677665 34789999999999999988887643221111123445667899999864 67776666655543

>d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]

Probab=97.44  E-value=0.00076  Score=36.59  Aligned_cols=68  Identities=9%  Similarity=-0.017  Sum_probs=52.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +.+++.-+.-+.|..+|-+|...|++|+.+.++.... .    .........++|.+..||..|.....+...
T Consensus         2 ~~~L~yf~~~g~~~~iRl~L~~~gi~ye~~~~~~~~~-~----~~~~~~p~g~lPvL~~~g~~i~eS~aI~~y   69 (75)
T d2gsqa2           2 KYTLHYFPLMGRAELCRFVLAAHGEEFTDRVVEMADW-P----NLKATMYSNAMPVLDIDGTKMSQSMCIARH   69 (75)
T ss_dssp             CEEEEECSSSGGGHHHHHHHHHTTCCCEEEECCTTTH-H----HHGGGSGGGSSCEEEETTEEECCHHHHHHH
T ss_pred             CEEEEecCCchhHHHHHHHHHHcCCCchhhccccccc-h----hhhhccccCCcCEEEECCeeeecHHHHHHH
Confidence            5677777877899999999999999999988875432 1    223334456899999999988887766554

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.44  E-value=0.00043  Score=42.41  Aligned_cols=22  Identities=14%  Similarity=0.153  Sum_probs=17.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHhh
Q 042938           12 PVVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      .|+.|+...||||.+....+..
T Consensus        27 ~I~ef~d~~Cp~C~~~~~~~~~   48 (172)
T d1z6ma1          27 KMIEFINVRCPYCRKWFEESEE   48 (172)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCHhHHHHHHHHhh
Confidence            3677999999999988766644

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=97.43  E-value=0.00022  Score=41.30  Aligned_cols=22  Identities=14%  Similarity=0.270  Sum_probs=19.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      ++.|+.+||++|+++...++++
T Consensus        24 lV~fya~wC~~Ck~~~p~~~~l   45 (116)
T d2djja1          24 LIEFYAPWCGHCKALAPKYEEL   45 (116)
T ss_dssp             EEEEECSSCTTHHHHHHHHHHH
T ss_pred             EEEEEecccccccccchHHHHH
Confidence            6789999999999999988765

>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.43  E-value=0.00077  Score=36.73  Aligned_cols=69  Identities=10%  Similarity=0.029  Sum_probs=52.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +...+|+-+....|..+|-+|...|++|+.+.++.... .    .........++|.+.+||..+.....+...
T Consensus         2 ~s~kL~Yf~~~g~~e~iRl~L~~~gi~yed~~~~~~~~-~----~~~~~~p~g~lP~l~~~g~~l~qS~aI~~Y   70 (76)
T d1m0ua2           2 HSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRVTRDEW-P----ALKPTMPMGQMPVLEVDGKRVHQSISMARF   70 (76)
T ss_dssp             CCEEEEEESSSGGGHHHHHHHHHHTCCCEEEEECTTTH-H----HHGGGSGGGCSCEEEETTEEEECHHHHHHH
T ss_pred             ccEEEEecCCchHHHHHHHHHHHcCCCCEEecCChhhh-h----hhhccCcCCCCcEEEECCcccccHHHHHHH
Confidence            45677777777889999999999999999888875432 1    223334556899999999998887766554

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.39  E-value=0.00016  Score=42.98  Aligned_cols=25  Identities=20%  Similarity=0.345  Sum_probs=18.5

Q ss_pred             CCCE-EEEEcCCCchHHHHHHHHhhc
Q 042938           10 EKPV-VIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        10 ~~~v-~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      .+++ +.|+.+|||+|.+....|.++
T Consensus        25 Gk~vll~fwa~wC~~C~~~~p~l~~l   50 (134)
T d1zzoa1          25 GKPAVLWFWAPWCPTCQGEAPVVGQV   50 (134)
T ss_dssp             TSCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEEecccccCcccccchhhHHH
Confidence            3444 458999999999887777554

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.0005  Score=40.92  Aligned_cols=36  Identities=14%  Similarity=0.194  Sum_probs=23.7

Q ss_pred             hCCCEEE-EEcCCCchHHHHHHHHhhc---CCCceEEEcc
Q 042938            9 NEKPVVI-FSKSECCICFSIQTLICGF---GANPTVYELD   44 (106)
Q Consensus         9 ~~~~v~v-f~~~~Cp~C~~~~~~L~~~---~v~~~~v~vd   44 (106)
                      +.++++| |+.+|||+|.+....|+++   ++.+..++++
T Consensus        19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~~~~vi~i~~~   58 (136)
T d1z5ye1          19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMNYK   58 (136)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred             CCCEEEEEEEcCcCCCcCccccchhhhhhhhhhhcccccc
Confidence            3445555 8999999999888777664   4444334333

>d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

Probab=97.25  E-value=0.0019  Score=35.12  Aligned_cols=67  Identities=6%  Similarity=-0.033  Sum_probs=50.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      ..+++-+....|..++-+|...|++|+.+.++......    . ...+....+|++..||..+.....+...
T Consensus         3 ~kL~Yf~~~g~~e~iRl~L~~~gi~~e~~~~~~~~~~~----~-~~~~p~g~lPvL~~~~~~l~qS~AI~~Y   69 (77)
T d1tu7a2           3 YKLTYFSIRGLAEPIRLFLVDQDIKFIDDRIAKDDFSS----I-KSQFQFGQLPCLYDGDQQIVQSGAILRH   69 (77)
T ss_dssp             EEEEEESSSGGGHHHHHHHHHTTCCCEEEEECGGGSTT----T-GGGSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             eEEEecCCcHHHHHHHHHHHHcCCCceeeecccccchh----h-cccCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            45666677889999999999999999988876543211    1 2235557999999999999888776654

>d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0016  Score=35.79  Aligned_cols=73  Identities=12%  Similarity=0.044  Sum_probs=51.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCch----HH-HHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGP----QI-ERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~----~~-~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      |+++++-+.-..+..++-+|...|++|+.+.++..+...    +. .+.....+....+|.+..+|..|.....+...
T Consensus         1 P~~L~Y~~~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lP~L~~~g~~l~eS~AIl~Y   78 (84)
T d2c4ja2           1 PMTLGYWNIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAILRY   78 (84)
T ss_dssp             CEEEEEESSSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHHHHH
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCCceEEEEccccccccchHHHhhhhhhccCCCCCCCEEEECCEEEecHHHHHHH
Confidence            567766677789999999999999999988887653321    10 11111223456899999999988877666554

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00064  Score=41.55  Aligned_cols=79  Identities=11%  Similarity=0.145  Sum_probs=43.2

Q ss_pred             EEEEcCCCchHHHHHH-HHhh------cCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE-EEC---CeE---eecch
Q 042938           14 VIFSKSECCICFSIQT-LICG------FGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV-FIG---QRL---VGGPN   79 (106)
Q Consensus        14 ~vf~~~~Cp~C~~~~~-~L~~------~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i-fv~---g~~---iGg~~   79 (106)
                      +.|+.+||++|++..+ +|..      .+-.|..+.++.+..  +-+++.+.++. .++|++ |++   |+.   .|+.+
T Consensus        47 V~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~fV~~~v~~~~~--e~~~~~~~y~v-~~~Pti~~idp~~ge~v~~~~~~~  123 (147)
T d2dlxa1          47 INIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQVYHDSE--EGQRYIQFYKL-GDFPYVSILDPRTGQKLVEWHQLD  123 (147)
T ss_dssp             EEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEEEESSSH--HHHHHHHHHTC-CSSSEEEEECTTTCCCCEEESSCC
T ss_pred             EEEecCCCCchHHHHHhccCCHHHHHHHhhheeEeeecccch--hhhhhhhheec-CceeEEEEEeCCCCeEecccCCCC
Confidence            4467899999987744 3322      223455555555332  23345555554 789976 564   543   34443


Q ss_pred             HHHhHHHhCCchHHHHhcC
Q 042938           80 QVMSLHVQNELGPLLVRAG   98 (106)
Q Consensus        80 ~~~~~~~~g~L~~~L~~~g   98 (106)
                       ..++.  ..|++.|.+.+
T Consensus       124 -~~~fl--~~L~~fl~~~~  139 (147)
T d2dlxa1         124 -VSSFL--DQVTGFLGEHG  139 (147)
T ss_dssp             -HHHHH--HHHHHHHHHTC
T ss_pred             -HHHHH--HHHHHHHhhCC
Confidence             33332  24666666554

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.03  E-value=0.0011  Score=38.99  Aligned_cols=65  Identities=6%  Similarity=0.097  Sum_probs=37.1

Q ss_pred             HHhhhhCCC--EEEEEcCCCchHH------HHHHHHh-------hcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEE
Q 042938            4 VTRMVNEKP--VVIFSKSECCICF------SIQTLIC-------GFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAV   68 (106)
Q Consensus         4 ~~~~~~~~~--v~vf~~~~Cp~C~------~~~~~L~-------~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~i   68 (106)
                      ++++++.++  ++.|+.|||++|.      .+...+.       ..++.+-.+|.+.+++      ...+++ ..++|++
T Consensus        21 f~~~l~~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~------l~~~~~-I~~yPTi   93 (124)
T d1a8ya1          21 YKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAA------VAKKLG-LTEEDSI   93 (124)
T ss_dssp             HHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHH------HHHTTT-CCSTTCE
T ss_pred             HHHHHHhCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccc------hhhccc-cccCCcE
Confidence            456666665  6779999999753      3333333       2345555566554432      223333 3667775


Q ss_pred             --EECCeEe
Q 042938           69 --FIGQRLV   75 (106)
Q Consensus        69 --fv~g~~i   75 (106)
                        |.+|+.+
T Consensus        94 ~~f~~g~~~  102 (124)
T d1a8ya1          94 YVFKEDEVI  102 (124)
T ss_dssp             EEEESSSEE
T ss_pred             EEeccCccE
Confidence              6788655

>d1k3ya2 c.47.1.5 (A:2-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=97.01  E-value=0.0017  Score=35.44  Aligned_cols=71  Identities=10%  Similarity=-0.071  Sum_probs=48.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      +..+|+-+.=+.|..++-+|...|++|+.+.++..+...+  ......+...++|++..||..+.....+.+.
T Consensus         3 k~kL~Yf~~~grae~irl~L~~~gv~yed~~~~~~~~~~~--~~~~~~~p~g~lPvl~~~g~~l~qS~AI~~Y   73 (79)
T d1k3ya2           3 KPKLHYFNARGRMESTRWLLAAAGVEFEEKFIKSAEDLDK--LRNDGYLMFQQVPMVEIDGMKLVQTRAILNY   73 (79)
T ss_dssp             CCEEEEESSSTTTHHHHHHHHHHTCCCEEEEECSHHHHHH--HHHTTCCTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CcEEEEcCCcHHHHHHHHHHHHcCCCceEEEecchhhhhh--hcccccCCCCCCCEEEECCeEEEcHHHHHHH
Confidence            3445555666899999999999999999887764322111  1112223346899999999988877666554

>d1duga2 c.47.1.5 (A:1-80) Class alpha GST {Schistosoma japonicum [TaxId: 6182]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Schistosoma japonicum [TaxId: 6182]

Probab=96.92  E-value=0.0025  Score=34.79  Aligned_cols=72  Identities=8%  Similarity=0.007  Sum_probs=49.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      |+..|.. .=..+..+|-+|...|++|+.+.++..+....-.+..........+|.+..||..+.....+...
T Consensus         2 P~L~Y~~-~rgrae~vRl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~p~~~lP~l~d~g~~l~qS~AI~ry   73 (80)
T d1duga2           2 PILGYWK-IKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRY   73 (80)
T ss_dssp             CEEEEES-SSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHHHH
T ss_pred             CEEEEcC-CchhhHHHHHHHHHcCCCceEEEEecccccccchhhhhccCCCcccceeccCCeeehhHHHHHHH
Confidence            5666664 44778999999999999999988877543222111111112346899999999888777666554

>d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica [TaxId: 6192]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Fasciola hepatica [TaxId: 6192]

Probab=96.89  E-value=0.0019  Score=35.22  Aligned_cols=72  Identities=7%  Similarity=-0.041  Sum_probs=46.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHh
Q 042938           12 PVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMS   83 (106)
Q Consensus        12 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~   83 (106)
                      |+.+++-+.=..|..+|-+|...|++|+.+.++.........+..........+|.+..||..+....-+..
T Consensus         1 p~~L~Y~~~rgrae~iRl~L~~~gv~ye~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~g~~l~qS~AI~~   72 (80)
T d1fhea2           1 PAKLGYWKLRGLAQPVRLFLEYLGEEYEEHLYGRDDREKWMSEKFNMGLDLPNLPYYIDDKCKLTQSVAIMR   72 (80)
T ss_dssp             CCEEEEESSCTTTHHHHHHHHHTTCCCEEEEECSTTSHHHHTTTTTSCCSSCCSSEEECSSCEEESTTHHHH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHcCCCCEEEEeccccchhcchhhhhccCCCcceeeeecCCeEEeCHHHHHH
Confidence            455533343357999999999999999999888754322111111112335689999888877766554444

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.85  E-value=0.00081  Score=40.69  Aligned_cols=39  Identities=21%  Similarity=0.141  Sum_probs=23.9

Q ss_pred             CCCEEE-EEcCCCchHHHHHHHHhh----cC--CCceEEEcccCCC
Q 042938           10 EKPVVI-FSKSECCICFSIQTLICG----FG--ANPTVYELDQIPN   48 (106)
Q Consensus        10 ~~~v~v-f~~~~Cp~C~~~~~~L~~----~~--v~~~~v~vd~~~~   48 (106)
                      .+.|+| |+.+|||.|++....|.+    ++  ..++.+-|..+.+
T Consensus        28 GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~   73 (144)
T d1i5ga_          28 GKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDES   73 (144)
T ss_dssp             TSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSS
T ss_pred             CCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEecccc
Confidence            334444 899999999977766643    32  3455555544433

>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Heligmosomoides polygyrus [TaxId: 6339]

Probab=96.84  E-value=0.0098  Score=32.10  Aligned_cols=69  Identities=7%  Similarity=-0.117  Sum_probs=49.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchHHHhH
Q 042938           11 KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQVMSL   84 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~~~~~   84 (106)
                      .+..+++-+.=..|..+|-+|...|++|+.+.++.....     .........++|.+.+||..+.....+...
T Consensus         2 ~~~kL~Yf~~~gr~e~vR~~L~~~gi~ye~~~~~~~~~~-----~~~~~~p~g~lPvL~~~g~~i~qS~AI~~y   70 (77)
T d1tw9a2           2 VHYKLTYFNGRGAGECARQVFALADQKYEDVRLTQETFV-----PLKATFPFGQVPVLEVDGQQLAQSQAICRY   70 (77)
T ss_dssp             CCEEEEEESSSGGGHHHHHHHHHTTCCCEEEEECHHHHG-----GGGGGSTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             CCeEEEECCCchHHHHHHHHHHHcCCCceeeecccccch-----hhhhhcccCCCCEEEECCEEEEcHHHHHHH
Confidence            345555556667899999999999999999887643211     122234457899999999998887766553

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=96.78  E-value=0.0032  Score=37.57  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=19.3

Q ss_pred             CCEEE-EEcCCCchHHHHHHHHhhcC
Q 042938           11 KPVVI-FSKSECCICFSIQTLICGFG   35 (106)
Q Consensus        11 ~~v~v-f~~~~Cp~C~~~~~~L~~~~   35 (106)
                      +.++| |+.+|||+|++....+.++.
T Consensus        32 K~vll~fwa~wC~~C~~~~p~l~~l~   57 (144)
T d1knga_          32 KVSLVNVWASWCVPCHDEAPLLTELG   57 (144)
T ss_dssp             SCEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred             CEEEEEeeccccccccccCchhhhhh
Confidence            34444 89999999998888887664

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.76  E-value=0.0021  Score=38.05  Aligned_cols=45  Identities=9%  Similarity=0.135  Sum_probs=26.7

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc-------CCCceEEEcccCCCchHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLICGF-------GANPTVYELDQIPNGPQIERALQQL   59 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~v~vd~~~~~~~~~~~l~~~   59 (106)
                      ++.|+.+|||+|.+....|.+.       ++.+-.+.++  ++..++++++.++
T Consensus        29 li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~--~~~~~~~~~~~~~   80 (137)
T d1st9a_          29 FLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVG--ESKIAVHNFMKSY   80 (137)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEES--CCHHHHHHHHHHT
T ss_pred             EEEEeeccccceeeccccccccccccccccccccccccc--chhhhHHHHHHHc
Confidence            5667899999998776666543       3333334443  3434455555543

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=96.71  E-value=0.0012  Score=39.70  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=15.8

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||.|.+....|.+
T Consensus        32 vl~FwatwC~~C~~~~p~l~~   52 (144)
T d1o73a_          32 FLYFSASWCPPCRGFTPVLAE   52 (144)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEeChhhCccchhhhHHHHH
Confidence            345889999999877766633

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.69  E-value=0.0013  Score=43.05  Aligned_cols=67  Identities=15%  Similarity=0.272  Sum_probs=39.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCC--Cce--EEEcc---------c--CCCchHHHHHHHHhCCC--CCccEEEECCe-E
Q 042938           13 VVIFSKSECCICFSIQTLICGFGA--NPT--VYELD---------Q--IPNGPQIERALQQLGCQ--PTVPAVFIGQR-L   74 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v--~~~--~v~vd---------~--~~~~~~~~~~l~~~~~~--~tvP~ifv~g~-~   74 (106)
                      |.+||+.+|+.|..+-.+|.++.-  ++.  -+-+|         .  .+...+-++......+.  ...|++++||+ .
T Consensus         9 VElFTSqgCssCPpAd~~L~~L~~~~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~vvnG~~~   88 (225)
T d2axoa1           9 VELFTSQGCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAILNGRDH   88 (225)
T ss_dssp             EEEEECTTCTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEETTTEE
T ss_pred             EEEeeCCCCCCCHHHHHHHHHhhCCCCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeEEEeCccc
Confidence            678999999999999999977621  111  12222         1  11112222334444332  34699999995 4


Q ss_pred             eecch
Q 042938           75 VGGPN   79 (106)
Q Consensus        75 iGg~~   79 (106)
                      ..|++
T Consensus        89 ~~gs~   93 (225)
T d2axoa1          89 VKGAD   93 (225)
T ss_dssp             EETTC
T ss_pred             ccccC
Confidence            45543

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=96.57  E-value=0.0036  Score=37.31  Aligned_cols=25  Identities=24%  Similarity=0.470  Sum_probs=17.3

Q ss_pred             hCCCEE-EEEcCCCchHHHHHHHHhh
Q 042938            9 NEKPVV-IFSKSECCICFSIQTLICG   33 (106)
Q Consensus         9 ~~~~v~-vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ..+.++ .|+.+|||+|.+....|.+
T Consensus        28 ~~k~vvl~f~a~~C~~C~~~~p~l~~   53 (143)
T d2b5xa1          28 GEKPTLIHFWSISCHLCKEAMPQVNE   53 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEcCCCcchhhhhhhhhh
Confidence            344443 3899999999977666543

>d1nhya2 c.47.1.5 (A:1-75) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: GST-like domain of elongation factor 1-gamma
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.0041  Score=33.68  Aligned_cols=67  Identities=9%  Similarity=-0.018  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEEC-CeEeecchHHHh
Q 042938           10 EKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIG-QRLVGGPNQVMS   83 (106)
Q Consensus        10 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~-g~~iGg~~~~~~   83 (106)
                      +...++|+.+. +.+..++.++.+.+++++.++.+..   .   +.+.+.+...+||++..+ |..+-...-+..
T Consensus         1 Ms~~tLY~~~~-~rs~~~~~~l~~~~~d~~~~~~~~~---~---~~~~~~nP~gkVP~L~~~~g~~l~ES~aI~~   68 (75)
T d1nhya2           1 MSQGTLYANFR-IRTWVPRGLVKALKLDVKVVTPDAA---A---EQFARDFPLKKVPAFVGPKGYKLTEAMAINY   68 (75)
T ss_dssp             CTTCEEECCSS-HHHHHHHHHHHHHTCCCEEECGGGC---H---HHHHHHCTTCCSSEEECGGGCEEESHHHHHH
T ss_pred             CCCeEEecCCC-chHHHHHHHHHhcCccccccCcccC---C---HHHHHhCcCCCCCeEEeCCeeEecCHHHHHH
Confidence            35678999876 4578889999999999987654432   1   233455767899999864 677776655544

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.48  E-value=0.00092  Score=39.68  Aligned_cols=54  Identities=15%  Similarity=0.338  Sum_probs=33.3

Q ss_pred             CEEEEEc-CCCchHHHHHHHHhhcC-----CCceEEEcccCCCchHHHHHHHHhCCCCCccEEEE
Q 042938           12 PVVIFSK-SECCICFSIQTLICGFG-----ANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFI   70 (106)
Q Consensus        12 ~v~vf~~-~~Cp~C~~~~~~L~~~~-----v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv   70 (106)
                      .+++|+. +.|++|..++++|++..     +.+++.+.+..+    -.+..+.++. ...|++.+
T Consensus        25 ~l~~~~~~~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e----~~~~~~~~~v-er~Ps~~i   84 (119)
T d1a8la1          25 KLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPE----GKELAKRYRI-DRAPATTI   84 (119)
T ss_dssp             EEEEEECSSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHH----HHHHHHHTTC-CSSSEEEE
T ss_pred             EEEEEecCCCchhHHHHHHHHHHHHhhCCCeEEEEeccCcch----hhhHHHhhcc-ccCceEEE
Confidence            4567765 67999999999998763     334444444321    1233444454 67887654

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=96.23  E-value=0.003  Score=37.47  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=15.0

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|.+....|.+
T Consensus        27 vl~F~a~wC~~C~~~~~~l~~   47 (143)
T d2fy6a1          27 LIKFWASWCPLCLSELGQTEK   47 (143)
T ss_dssp             EEEEECTTCHHHHTTHHHHHH
T ss_pred             EEEEECCCCccccccCcchhh
Confidence            456899999999965444433

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=96.15  E-value=0.0033  Score=39.53  Aligned_cols=22  Identities=14%  Similarity=0.202  Sum_probs=16.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhc
Q 042938           13 VVIFSKSECCICFSIQTLICGF   34 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~   34 (106)
                      |+.|+.+|||+|++....|.++
T Consensus        36 vl~FwatwCp~C~~~~p~l~~l   57 (187)
T d2cvba1          36 AVVFMCNHCPYVKGSIGELVAL   57 (187)
T ss_dssp             EEEEECSSCHHHHTTHHHHHHH
T ss_pred             EEEEeCCCCccchhhhhhhhhh
Confidence            5669999999998766555443

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.02  E-value=0.0054  Score=36.34  Aligned_cols=20  Identities=20%  Similarity=0.184  Sum_probs=15.0

Q ss_pred             EEEEEcCCCchHHHHHHHHh
Q 042938           13 VVIFSKSECCICFSIQTLIC   32 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~   32 (106)
                      ++.|+.+|||.|.+....|.
T Consensus        30 ll~Fwa~wC~~C~~~~~~l~   49 (144)
T d1o8xa_          30 FFYFSASWCPPARGFTPQLI   49 (144)
T ss_dssp             EEEEECTTCHHHHHHHHHHH
T ss_pred             EEEeccccccccccccchhH
Confidence            34589999999987765553

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.006  Score=37.59  Aligned_cols=31  Identities=13%  Similarity=0.106  Sum_probs=21.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhh----cCCCceEEEc
Q 042938           13 VVIFSKSECCICFSIQTLICG----FGANPTVYEL   43 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~v~v   43 (106)
                      |++|+-+.||||++....+..    ..+.+..+++
T Consensus        40 v~vF~D~~CP~C~~~~~~l~~l~~~~~v~v~~~~~   74 (169)
T d1v58a1          40 VYVFADPFCPYCKQFWQQARPWVDSGKVQLRTLLV   74 (169)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             EEEEECCCCcchHHHHHHHHHHHhccceeEEEEec
Confidence            677999999999977655544    3455555544

>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Hypothetical protein AGR pAT 752p/Atu5508
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.43  E-value=0.0025  Score=35.43  Aligned_cols=72  Identities=10%  Similarity=-0.032  Sum_probs=48.2

Q ss_pred             hCCCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC--eEeecchHH
Q 042938            9 NEKPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ--RLVGGPNQV   81 (106)
Q Consensus         9 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g--~~iGg~~~~   81 (106)
                      .++.+++|+-+....+..++-+|...|++|+.+.++........ +..........+|.+.+++  ..+....-+
T Consensus         4 ~M~~~~L~Y~~~~g~~e~vRl~L~~~g~~ye~~~~~~~~~~~~~-~~~~~~~p~~~~P~l~~~~g~~~l~qS~AI   77 (87)
T d2fnoa2           4 GMNTFDLYYWPVPFRGQLIRGILAHCGCSWDEHDVDAIEGLMDC-GAEKQPVAFMGPPVLIDRERNFAISQMPAI   77 (87)
T ss_dssp             SCBSEEEECCSSSSTTHHHHHHHHHTTCCEECCCHHHHHHHHHS-CGGGSSSCCSSSCEEEETTTTEEEESHHHH
T ss_pred             CCCCeEEEECCCCcchHHHHHHHHHHhCcceeeccchhHHHHHh-hcccccCCCCCCCEEEecCCCeeeehHHHH
Confidence            35679999999888999999999999999998776642211110 1112224457899998854  345554443

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.09  E-value=0.13  Score=29.46  Aligned_cols=70  Identities=6%  Similarity=-0.022  Sum_probs=38.8

Q ss_pred             HHHhhhhCCC--EEEEEcCCC-----chHHHHHHHHhhcCCCc-eEEEcccCCCchHHHHHHHHhC-CCCCccEE--EEC
Q 042938            3 MVTRMVNEKP--VVIFSKSEC-----CICFSIQTLICGFGANP-TVYELDQIPNGPQIERALQQLG-CQPTVPAV--FIG   71 (106)
Q Consensus         3 ~~~~~~~~~~--v~vf~~~~C-----p~C~~~~~~L~~~~v~~-~~v~vd~~~~~~~~~~~l~~~~-~~~tvP~i--fv~   71 (106)
                      .+.+++..++  +|.|+.+||     |.|.++.+.+.+..-.. ..+++........ .+...+++ ...++|+|  |.+
T Consensus        13 nFd~~i~~~~~~lV~F~~~wc~~~~~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n-~~l~~~~~~~I~~yPTi~~f~~   91 (122)
T d1g7ea_          13 TFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLN-MELSEKYKLDKESYPVFYLFRD   91 (122)
T ss_dssp             HHHHHGGGSSEEEEEEECSSCCTTTTHHHHHHHHHGGGCSSEEEEEEESCCTTSCHH-HHHHHHHTCSSSSCEEEEEEES
T ss_pred             hHHHHHhhCCeEEEEEecCCcCcccCHHHHHHHHHHHHHHHHhhhccceeecccccc-HHHHHhhcccccCCCeEEEEec
Confidence            4567777766  466866665     66667777776653322 3455554333222 12222333 23578886  677


Q ss_pred             Ce
Q 042938           72 QR   73 (106)
Q Consensus        72 g~   73 (106)
                      |.
T Consensus        92 G~   93 (122)
T d1g7ea_          92 GD   93 (122)
T ss_dssp             SC
T ss_pred             Cc
Confidence            74

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=94.76  E-value=0.053  Score=32.99  Aligned_cols=21  Identities=14%  Similarity=0.148  Sum_probs=15.4

Q ss_pred             EEEEEcCCCchHHHHHHHHhh
Q 042938           13 VVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ++.|+.+|||+|......|.+
T Consensus        60 ll~F~a~wC~~C~~~~~~l~~   80 (176)
T d1jfua_          60 LVNLWATWCVPCRKEMPALDE   80 (176)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEeccCcccchHHHHHhhhh
Confidence            455789999999766655544

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.00  E-value=0.27  Score=29.28  Aligned_cols=24  Identities=13%  Similarity=0.200  Sum_probs=15.1

Q ss_pred             HHhhhhCCC-EEEEE--cCCCchHHHH
Q 042938            4 VTRMVNEKP-VVIFS--KSECCICFSI   27 (106)
Q Consensus         4 ~~~~~~~~~-v~vf~--~~~Cp~C~~~   27 (106)
                      ++++...++ |++|.  .+|||.|..-
T Consensus        26 l~~~~~k~~~vvlff~p~~~cp~C~~~   52 (156)
T d2a4va1          26 LKKITENNRVVVFFVYPRASTPGSTRQ   52 (156)
T ss_dssp             HHHHHHHCSEEEEEECSSSSSHHHHHH
T ss_pred             eHHHcCCccEEEEEecccccCcchhhh
Confidence            344454555 45454  7899999853

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.012  Score=37.20  Aligned_cols=54  Identities=15%  Similarity=0.132  Sum_probs=32.1

Q ss_pred             HHHHHHHhhcCCCceEEEcccCCCc--hHHHHH--HHHhCCCCCccEEEECCeEeecc
Q 042938           25 FSIQTLICGFGANPTVYELDQIPNG--PQIERA--LQQLGCQPTVPAVFIGQRLVGGP   78 (106)
Q Consensus        25 ~~~~~~L~~~~v~~~~v~vd~~~~~--~~~~~~--l~~~~~~~tvP~ifv~g~~iGg~   78 (106)
                      ..+++++.+.|++-..++-..++..  ..+++.  +.+..+..++|+++|||+++-+.
T Consensus         7 ~~i~~~~~~~Gld~~~f~~~~~s~~~~~~v~~~~~~a~~~gi~GtPtfiVnGky~v~~   64 (195)
T d1un2a_           7 SDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLNP   64 (195)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEECG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCCEEEECCeeeecc
Confidence            3578888999988655433222211  112211  12224458999999999987654

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=92.40  E-value=0.041  Score=33.09  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=17.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHhh
Q 042938           11 KPVVIFSKSECCICFSIQTLICG   33 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L~~   33 (106)
                      ..|+.|+...||+|.+....+..
T Consensus        20 ~~Ivef~d~~Cp~C~~~~~~~~~   42 (181)
T d1beda_          20 PVVSEFFSFYCPHCNTFEPIIAQ   42 (181)
T ss_dssp             CEEEEEECTTCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCccchhhhhhhhh
Confidence            35788999999999877655533

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=92.20  E-value=0.048  Score=32.75  Aligned_cols=20  Identities=25%  Similarity=0.302  Sum_probs=15.3

Q ss_pred             CCCCccEEEECCeEeecchH
Q 042938           61 CQPTVPAVFIGQRLVGGPNQ   80 (106)
Q Consensus        61 ~~~tvP~ifv~g~~iGg~~~   80 (106)
                      +..++|+++|||+++.+...
T Consensus       144 gi~gTPt~~InGk~~v~~~~  163 (181)
T d1beda_         144 GLTGVPAVVVNNRYLVQGQS  163 (181)
T ss_dssp             TCCSSSEEEETTTEEECGGG
T ss_pred             CCccccEEEECCEEeeCCCC
Confidence            34899999999997755443

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=89.99  E-value=0.068  Score=31.25  Aligned_cols=75  Identities=16%  Similarity=0.122  Sum_probs=47.3

Q ss_pred             hHHHhhhhC-CCEEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECCeEeecchH
Q 042938            2 DMVTRMVNE-KPVVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQRLVGGPNQ   80 (106)
Q Consensus         2 ~~~~~~~~~-~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g~~iGg~~~   80 (106)
                      +.++++-++ +.|+++|...=..+.....+|.+.+++|..++........    .-.-.++.+.. -+|||++.++++.+
T Consensus        28 e~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~~i~yd~i~~~~~~~~~----~~~~~~~Kp~a-d~yIDDKai~~~~~  102 (122)
T d2obba1          28 ETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANKDYPEEER----DHQGFSRKLKA-DLFIDDRNVGGIPD  102 (122)
T ss_dssp             HHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEESSSSTTC-------CCSCCSSCCC-SEEECTTSTTCCCC
T ss_pred             HHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHcCCCceehhccCccCcc----ccceecCCccc-cEEEeCCcccCCCC
Confidence            456676655 5688888777667788899999999999876544322111    10001222333 48999999886543


Q ss_pred             H
Q 042938           81 V   81 (106)
Q Consensus        81 ~   81 (106)
                      .
T Consensus       103 w  103 (122)
T d2obba1         103 W  103 (122)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.41  E-value=0.35  Score=28.44  Aligned_cols=30  Identities=10%  Similarity=0.154  Sum_probs=18.6

Q ss_pred             HhhhhC-CCEEEE-E-cCCCchHHHHHHHHhhc
Q 042938            5 TRMVNE-KPVVIF-S-KSECCICFSIQTLICGF   34 (106)
Q Consensus         5 ~~~~~~-~~v~vf-~-~~~Cp~C~~~~~~L~~~   34 (106)
                      .+.... .+++++ + .+|||.|..-...|.+.
T Consensus        24 sd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~   56 (160)
T d2cx4a1          24 YEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDK   56 (160)
T ss_dssp             HHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHT
T ss_pred             HHHhhCCCEEEEEecccccCCchhhhhhhhhcc
Confidence            344433 345554 3 68999998766666554

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=88.16  E-value=0.12  Score=31.14  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=16.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHH
Q 042938           11 KPVVIFSKSECCICFSIQTLI   31 (106)
Q Consensus        11 ~~v~vf~~~~Cp~C~~~~~~L   31 (106)
                      ..|+-|..-.||||.+....|
T Consensus        20 ~~VvEffdy~Cp~C~~~~~~l   40 (188)
T d1fvka_          20 PQVLEFFSFFCPHCYQFEEVL   40 (188)
T ss_dssp             CSEEEEECTTCHHHHHHHHTT
T ss_pred             CEEEEEECCCChhhHHHHHHH
Confidence            457889999999999877554

>d1oe8a2 c.47.1.5 (A:4-84) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Blood fluke (Schistosoma haematobium) [TaxId: 6185]

Probab=88.00  E-value=0.69  Score=24.35  Aligned_cols=55  Identities=16%  Similarity=0.057  Sum_probs=36.6

Q ss_pred             EEEEEcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHhCCCCCccEEEECC
Q 042938           13 VVIFSKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQLGCQPTVPAVFIGQ   72 (106)
Q Consensus        13 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~~~~~tvP~ifv~g   72 (106)
                      +.+++-+.=..|..+|-+|...|++|+.+.++..+. .    ..+........|...+.+
T Consensus         3 ~kL~Y~~~rgr~e~iR~lL~~~gv~ye~~~~~~~~~-~----~~k~~~~~~~lP~~~~p~   57 (81)
T d1oe8a2           3 IKVIYFNGRGRAESIRMTLVAAGVNYEDERISFQDW-P----KIKPTIPGGRLPAVKITD   57 (81)
T ss_dssp             EEEEESCTTSTTHHHHHHHHHTTCCCEEEECCTTTH-H----HHGGGSTTSCSCEEEEEC
T ss_pred             EEEEeCCCchHHHHHHHHHHHcCCCceeEeccchhh-H----HhhhcccccCCCcccCCc
Confidence            556666666799999999999999999888765431 1    112222234567766643

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.36  E-value=0.3  Score=28.61  Aligned_cols=27  Identities=15%  Similarity=0.122  Sum_probs=16.0

Q ss_pred             hhhCCCEEEE--EcCCCchHHHHHHHHhh
Q 042938            7 MVNEKPVVIF--SKSECCICFSIQTLICG   33 (106)
Q Consensus         7 ~~~~~~v~vf--~~~~Cp~C~~~~~~L~~   33 (106)
                      ......++++  ..++||.|..-...|.+
T Consensus        26 ~~g~~~vvl~~~~~~~cp~C~~e~~~l~~   54 (153)
T d1xvwa1          26 YRGAKNVLLVFFPLAFTGICQGELDQLRD   54 (153)
T ss_dssp             GTTTCEEEEEECSCTTSSHHHHHHHHHHH
T ss_pred             HcCCCcEEEEecccccccchhhhhhhhhh
Confidence            3333445554  36889999865555533

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=85.32  E-value=0.72  Score=27.53  Aligned_cols=32  Identities=16%  Similarity=0.293  Sum_probs=15.3

Q ss_pred             EEEEEcCCCc-hHHH-------HHHHHhhcCCCceEEEcc
Q 042938           13 VVIFSKSECC-ICFS-------IQTLICGFGANPTVYELD   44 (106)
Q Consensus        13 v~vf~~~~Cp-~C~~-------~~~~L~~~~v~~~~v~vd   44 (106)
                      |+.|+-++|| .|..       +...|.+.+..+..+-|.
T Consensus        35 vl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~is   74 (172)
T d1xzoa1          35 LADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFS   74 (172)
T ss_dssp             EEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEEEecccccccccccchhhhhhhhhhccccccccccccc
Confidence            3446666665 4542       223334445555554443

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.03  E-value=0.86  Score=28.83  Aligned_cols=25  Identities=12%  Similarity=0.244  Sum_probs=16.5

Q ss_pred             HHhhhhCCCEEEEE--cCCCchHHHHH
Q 042938            4 VTRMVNEKPVVIFS--KSECCICFSIQ   28 (106)
Q Consensus         4 ~~~~~~~~~v~vf~--~~~Cp~C~~~~   28 (106)
                      +.+......+++|.  ..+||.|..-.
T Consensus        21 Lsd~~g~k~vVLfFyP~dftpvC~~El   47 (220)
T d1prxa_          21 FHDFLGDSWGILFSHPRDFTPVCTTEL   47 (220)
T ss_dssp             HHHHHTTSEEEEEEESCSSCHHHHHHH
T ss_pred             eHHHcCCCeEEEEEECCCCCCcchhhH
Confidence            34455555677766  67899997543

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=84.08  E-value=0.58  Score=30.13  Aligned_cols=34  Identities=21%  Similarity=0.197  Sum_probs=19.6

Q ss_pred             CCEEEEE--cCCCchHHHHHH-------HHhhcCCCceEEEcc
Q 042938           11 KPVVIFS--KSECCICFSIQT-------LICGFGANPTVYELD   44 (106)
Q Consensus        11 ~~v~vf~--~~~Cp~C~~~~~-------~L~~~~v~~~~v~vd   44 (106)
                      ..+++|+  .++||.|..-..       -|.+.|+..--+.+|
T Consensus        30 k~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~D   72 (237)
T d2zcta1          30 KWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVD   72 (237)
T ss_dssp             CEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESS
T ss_pred             CEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCC
Confidence            3466655  689999975433       334456554444444

>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Acetobacter aceti [TaxId: 435]

Probab=83.68  E-value=1.3  Score=26.77  Aligned_cols=48  Identities=8%  Similarity=-0.002  Sum_probs=37.3

Q ss_pred             CEEEEE--cCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh
Q 042938           12 PVVIFS--KSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL   59 (106)
Q Consensus        12 ~v~vf~--~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~   59 (106)
                      +|.|..  ++.=|.++++...|+++|++|+..-+..+-....+.++++..
T Consensus         4 ~V~IimGS~SD~~v~~~a~~~L~~~gI~~e~~v~SAHR~p~~l~~~~~~~   53 (159)
T d1u11a_           4 VVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTA   53 (159)
T ss_dssp             SEEEEESSGGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHT
T ss_pred             eEEEEeCCHhhHHHHHHHHHHHHHhCCceEEEEehHhhChHHHHHHHHHH
Confidence            454443  355788999999999999999988777787777788887654

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.10  E-value=0.24  Score=29.73  Aligned_cols=22  Identities=18%  Similarity=0.143  Sum_probs=14.2

Q ss_pred             CEEEEE--cCCCchHHHHHHHHhh
Q 042938           12 PVVIFS--KSECCICFSIQTLICG   33 (106)
Q Consensus        12 ~v~vf~--~~~Cp~C~~~~~~L~~   33 (106)
                      .+++|.  .++||.|..-..-|.+
T Consensus        46 ~vvl~f~p~~~~p~C~~~~~~~~~   69 (169)
T d2bmxa1          46 WRVVFFWPKDFTFVCPTEIAAFSK   69 (169)
T ss_dssp             EEEEEECSCTTSCCCHHHHHHHHH
T ss_pred             eEEEEEecCCCCcccccccccccc
Confidence            455543  7899999865555533

>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Bacillus anthracis [TaxId: 1392]

Probab=81.55  E-value=1.7  Score=26.17  Aligned_cols=43  Identities=5%  Similarity=-0.165  Sum_probs=34.7

Q ss_pred             EcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh
Q 042938           17 SKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL   59 (106)
Q Consensus        17 ~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~   59 (106)
                      +++.=|.-.++...|+++|++|+..-+..+-...++.++++..
T Consensus        10 S~SD~~~~~~a~~~L~~~gi~~~~~v~SAHrtp~rl~~~~~~~   52 (155)
T d1xmpa_          10 STSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETA   52 (155)
T ss_dssp             SGGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHT
T ss_pred             cHhhHHHHHHHHHHHHHcCCcEEEEEechhcChHHHHHHHHHH
Confidence            3455678889999999999999887777777777788887764

>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
domain: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
species: Thermotoga maritima [TaxId: 2336]

Probab=81.43  E-value=1.5  Score=26.82  Aligned_cols=43  Identities=9%  Similarity=0.067  Sum_probs=35.5

Q ss_pred             EcCCCchHHHHHHHHhhcCCCceEEEcccCCCchHHHHHHHHh
Q 042938           17 SKSECCICFSIQTLICGFGANPTVYELDQIPNGPQIERALQQL   59 (106)
Q Consensus        17 ~~~~Cp~C~~~~~~L~~~~v~~~~v~vd~~~~~~~~~~~l~~~   59 (106)
                      +.+.=|.+.++...|+++|++|+..-...+-...++.+++...
T Consensus         9 s~SD~~~~~~a~~~L~~~gi~~~~~v~saHr~p~rl~~~~~~~   51 (169)
T d1o4va_           9 SDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNA   51 (169)
T ss_dssp             CGGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHT
T ss_pred             cHhhHHHHHHHHHHHHHcCCcEEEEEeeeecCHHHHHHHHHHH
Confidence            4566789999999999999999987777777777777777665

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=80.03  E-value=0.2  Score=30.36  Aligned_cols=20  Identities=10%  Similarity=0.132  Sum_probs=11.7

Q ss_pred             CEEE-EE-cCCCchHHHHHHHH
Q 042938           12 PVVI-FS-KSECCICFSIQTLI   31 (106)
Q Consensus        12 ~v~v-f~-~~~Cp~C~~~~~~L   31 (106)
                      .+++ |+ ..|||.|..-..-|
T Consensus        33 ~vvl~F~p~~~~p~C~~e~~~~   54 (166)
T d1we0a1          33 WSIVVFYPADFSFVCPTELEDV   54 (166)
T ss_dssp             EEEEEECSCTTCSSCTHHHHHH
T ss_pred             eEEEEEecccCCcHHHHHHHHH
Confidence            3444 44 45899997544333