Citrus Sinensis ID: 042944

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------
Protein Sequence
MGMREQVNLVMCRQKEVELTMCRREQAELAMCRRKQVELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYVYYRSATLDGFVS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEccccccccEEEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccEEEccccccccccccccccccccccccEEEcccccccccccHHHHHccccccEEEccccccccccccccccccccccEEEccccccccccHHccccccccEEEcccccccccccHHHHHccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEcHHHHcccccccEEEccccEEEEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEccccccccccccccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHccccccccccccccccccccEEEEEEcccccccccccHHHcccccccEEEEccccccccccccccccHHHccccccEEEEcccccccccccccHHHHccccccEEEEEccccccccccHHHHHHHHHccEEEcccccccccccHHHHHccccccEEEccccccccccHHHcccccccEEEEccccccccccHHHHcccHcccccccEEEEcccccccccccccccccccEEEEccccccccccHHHccccccEEEEEcccccccccccccccccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHHcccccccEEEEccccccccccHHHccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHcccccccEEEEccccccccccHHHccccEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHccccccEEEEcccccccccccccccccccHHHcccccccEEEcccccccccccHHHHHHHHHccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHcHHHHcc
Coil and Loop (DISEMBL)
MGMREQVNLVMCRQKEVELTMCRREQAELAMCRRKQVELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASStllsinrpslssmnsstsltlldlsscglsnsaYHWLFKISSNLLaldlnsnqlagpipdyafsNMTALQHLNLSLNQISAISKSFgnmcglktlhlfdnnltgqlpelflnlsgcsknSLEILKLGgnkltgslpditefsslqelhlfdnkldgsfpekfrkpsplvilnldgnqlwgslpdlsvfpfltrldvsdsrlngtvseglgrlsklEFLDLFGNSLEGMITESHVsnlsklkymdfSFNSLalnfsfgwlppfqlesigllhcklgphfpkwlqsqknyyfldisdteisdavpswfwdlspnlyylnLSHNHLEGTVLDLslnyagypgidlssndfegpvppvpgnvtslnlsnnkfsgpisslcsisgeyfsyldvsdnllsgelpdCLLRWQALAVLNLannnfsgnfltffvgeippslkkcnelkiidagdnkfsgtipawigdtlpKLAILSLrsnqfhgsiprnlcrlsKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYVYYRSatldgfvs
Flexible Loop (DISEMBL)
mgmreqvnlvmcrqkevelTMCRREQAELAMCRRKQVELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLlsinrpslssmNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTvseglgrlskLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYVYYRSATLDGFVS
Low Complexity Region (SEG)
MGMREQVNLVMCRQKEVELTMCRREQAELAMCRRKQVELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPslssmnsstsltlldlsscglsNSAYHWLFKIssnllaldlnsnqlAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDfsfnslalnfsfGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDlspnlyylnlshnhlEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQalavlnlannnFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYVYYRSATLDGFVS
Disordered region (IsUnstruct)
*******NLVMCRQKEVELTMCRREQAELAMCRRKQVELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSIN************LTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSN***************LNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYVYYRSATLDG***
Disordered Region (DISOPRED)
MGM**QVNLVMCRQKEVELTMCRREQAELAMCRRKQVELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYVYYRSATLDGFVS
Disordered Region (DISEMBL)
MGMREQVNLVMCRQKEVELTMCRREQAELAMCRRKQVELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYVYYRSATLDGFVS
Disordered Region (DISPRO)
MGMREQVNLVMCRQKEVELTMCRREQAELAMCRRKQVELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYVYYRSATLDGF*S
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGMREQVNLVMCRQKEVELTMCRREQAELAMCRRKQVELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYVYYRSATLDGFVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	637	2.2.26 [Sep-21-2011]
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.693	0.353	0.316	3e-44
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.731	0.372	0.308	4e-41
C0LGW6	966	LRR receptor-like serine/	no	no	0.643	0.424	0.328	2e-39
O49318	1124	Probable leucine-rich rep	no	no	0.706	0.400	0.301	3e-38
Q9LHP4	1141	Receptor-like protein kin	no	no	0.701	0.391	0.319	3e-38
Q42371	976	LRR receptor-like serine/	no	no	0.675	0.440	0.309	5e-38
Q6XAT2	967	LRR receptor-like serine/	no	no	0.653	0.430	0.316	2e-37
Q9FL28	1173	LRR receptor-like serine/	no	no	0.670	0.364	0.310	4e-37
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.791	0.482	0.298	4e-37
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.772	0.446	0.301	5e-37

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  180 bits (456), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 154/486 (31%), Positives = 241/486 (49%), Gaps = 44/486 (9%)

Query: 120 LDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA 179
           L+L+  GL+ S   W  +   NL+ LDL+SN L GPIP  A SN+T+L+ L L  NQ++ 
Sbjct: 76  LNLTGLGLTGSISPWFGRFD-NLIHLDLSSNNLVGPIP-TALSNLTSLESLFLFSNQLTG 133

Query: 180 -ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DIT 237
            I    G++  +++L + DN L G +PE   NL      +L++L L   +LTG +P  + 
Sbjct: 134 EIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLV-----NLQMLALASCRLTGPIPSQLG 188

Query: 238 EFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSD 296
               +Q L L DN L+G  P +    S L +     N L G++P +L     L  L++++
Sbjct: 189 RLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEILNLAN 248

Query: 297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGW 356
           + L G +   LG +S+L++L L  N L+G+I +S +++L  L+ +D S N+L       +
Sbjct: 249 NSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKS-LADLGNLQTLDLSANNLTGEIPEEF 307

Query: 357 LPPFQLESIGLLHCKLGPHFPKWLQSQK-NYYFLDISDTEISDAVPSWFWDLSPNLYYLN 415
               QL  + L +  L    PK + S   N   L +S T++S  +P        +L  L+
Sbjct: 308 WNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQ-SLKQLD 366

Query: 416 LSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCS 475
           LS+N L G++ +          + L +N  EG + P   N+T+L                
Sbjct: 367 LSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNL---------------- 410

Query: 476 ISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCN 535
                  +L +  N L G+LP  +   + L VL L  N FS        GEIP  +  C 
Sbjct: 411 ------QWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFS--------GEIPQEIGNCT 456

Query: 536 ELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNS 595
            LK+ID   N F G IP  IG  L +L +L LR N+  G +P +L    ++ +LD + N 
Sbjct: 457 SLKMIDMFGNHFEGEIPPSIG-RLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQ 515

Query: 596 ISGAIP 601
           +SG+IP
Sbjct: 516 LSGSIP 521

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  169 bits (429), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 159/516 (30%), Positives = 253/516 (49%), Gaps = 50/516 (9%)

Query: 120 LDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA 179
           L+LS  GL+ S    + + + NL+ +DL+SN+L GPIP    +  ++L+ L+L  N +S 
Sbjct: 76  LNLSGLGLTGSISPSIGRFN-NLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSG 134

Query: 180 -ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-IT 237
            I    G++  LK+L L DN L G +PE F NL      +L++L L   +LTG +P    
Sbjct: 135 DIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLV-----NLQMLALASCRLTGLIPSRFG 189

Query: 238 EFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSD 296
               LQ L L DN+L+G  P +    + L +     N+L GSLP +L+    L  L++ D
Sbjct: 190 RLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGD 249

Query: 297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNS--------- 347
           +  +G +   LG L  +++L+L GN L+G+I +  ++ L+ L+ +D S N+         
Sbjct: 250 NSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPK-RLTELANLQTLDLSSNNLTGVIHEEF 308

Query: 348 ----------LALNFSFGWLPP------FQLESIGLLHCKLGPHFPKWLQSQKNYYFLDI 391
                     LA N   G LP         L+ + L   +L    P  + + ++   LD+
Sbjct: 309 WRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDL 368

Query: 392 SDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPP 451
           S+  ++  +P   + L   L  L L++N LEGT+     N        L  N+ EG VP 
Sbjct: 369 SNNTLTGQIPDSLFQLV-ELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPK 427

Query: 452 VPGNVTSLN---LSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVL 508
             G +  L    L  N+FSG +      +      +D   N LSGE+P  + R + L  L
Sbjct: 428 EIGFLGKLEIMYLYENRFSGEMPVEIG-NCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRL 486

Query: 509 NLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLR 568
           +L  N          VG IP SL  C+++ +ID  DN+ SG+IP+  G  L  L +  + 
Sbjct: 487 HLRENE--------LVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFG-FLTALELFMIY 537

Query: 569 SNQFHGSIPRNLCRLSKIQLLDFSLNSISGAI-PKC 603
           +N   G++P +L  L  +  ++FS N  +G+I P C
Sbjct: 538 NNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLC 573

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score =  164 bits (416), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 145/442 (32%), Positives = 219/442 (49%), Gaps = 32/442 (7%)

Query: 170 LNLS-LNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK 228
           LNLS LN    IS + G++  L+++ L  N L GQ+P+    +  C+  SL  L L  N 
Sbjct: 76  LNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPD---EIGNCA--SLVYLDLSENL 130

Query: 229 LTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF- 286
           L G +P  I++   L+ L+L +N+L G  P    +   L  L+L GN L G +  L  + 
Sbjct: 131 LYGDIPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKRLDLAGNHLTGEISRLLYWN 190

Query: 287 PFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFN 346
             L  L +  + L GT+S  + +L+ L + D+ GN+L G I ES + N +  + +D S+N
Sbjct: 191 EVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPES-IGNCTSFQILDISYN 249

Query: 347 SLA--LNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWF 404
            +   + ++ G+L   Q+ ++ L   +L    P+ +   +    LD+SD E+   +P   
Sbjct: 250 QITGEIPYNIGFL---QVATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPPIL 306

Query: 405 WDLS--PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL--- 459
            +LS    LY   L  N L G +     N +    + L+ N   G +PP  G +  L   
Sbjct: 307 GNLSFTGKLY---LHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFEL 363

Query: 460 NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNF 519
           NL+NN+  GPI S  S S    +  +V  NLLSG +P       +L  LNL++NNF G  
Sbjct: 364 NLANNRLVGPIPSNIS-SCAALNQFNVHGNLLSGSIPLAFRNLGSLTYLNLSSNNFKG-- 420

Query: 520 LTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRN 579
                 +IP  L     L  +D   N FSG+IP  +GD L  L IL+L  N   G +P  
Sbjct: 421 ------KIPVELGHIINLDKLDLSGNNFSGSIPLTLGD-LEHLLILNLSRNHLSGQLPAE 473

Query: 580 LCRLSKIQLLDFSLNSISGAIP 601
              L  IQ++D S N +SG IP
Sbjct: 474 FGNLRSIQMIDVSFNLLSGVIP 495

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  160 bits (405), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 165/547 (30%), Positives = 252/547 (46%), Gaps = 97/547 (17%)

Query: 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDN 198
           S L  + LN+NQ  G IP    + ++ L+  N+  N++S  + +  G++  L+ L  + N
Sbjct: 133 SKLEVMFLNNNQFGGSIP-VEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTN 191

Query: 199 NLTGQLPELFLNLSG-----CSKN--------------SLEILKLGGNKLTGSLP-DITE 238
           NLTG LP    NL+        +N              +L++L L  N ++G LP +I  
Sbjct: 192 NLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGM 251

Query: 239 FSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDS 297
              LQE+ L+ NK  G  P+     + L  L L GN L G +P ++     L +L +  +
Sbjct: 252 LVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQN 311

Query: 298 RLNGTVSEGLGRLSK------------------------LEFLDLFGNSLEGMITESHVS 333
           +LNGT+ + LG+LSK                        L  L LF N L G+I  + +S
Sbjct: 312 QLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIP-NELS 370

Query: 334 NLSKLKYMDFSFNSLALNFSFGWLPP-FQ----LESIGLLHCKLGPHFPKWLQSQKNYYF 388
            L  L  +D S NSL      G +PP FQ    +  + L H  L    P+ L      + 
Sbjct: 371 KLRNLAKLDLSINSLT-----GPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWV 425

Query: 389 LDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLD--------LSLNYAG------ 434
           +D S+ ++S  +P +    S NL  LNL  N + G +          L L   G      
Sbjct: 426 VDFSENQLSGKIPPFICQQS-NLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQ 484

Query: 435 YP----------GIDLSSNDFEGPVPPVPG---NVTSLNLSNNKFSGPISSLCSISGEYF 481
           +P           I+L  N F GP+PP  G    +  L+L+ N+FS  + +  S      
Sbjct: 485 FPTELCKLVNLSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLV 544

Query: 482 SYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIID 541
           ++ +VS N L+G +P  +   + L  L+L+ N+        F+G +PP L   ++L+I+ 
Sbjct: 545 TF-NVSSNSLTGPIPSEIANCKMLQRLDLSRNS--------FIGSLPPELGSLHQLEILR 595

Query: 542 AGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQL-LDFSLNSISGAI 600
             +N+FSG IP  IG+ L  L  L +  N F GSIP  L  LS +Q+ ++ S N  SG I
Sbjct: 596 LSENRFSGNIPFTIGN-LTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEI 654

Query: 601 PKCINNL 607
           P  I NL
Sbjct: 655 PPEIGNL 661

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  160 bits (405), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 159/498 (31%), Positives = 242/498 (48%), Gaps = 51/498 (10%)

Query: 142 LLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNNL 200
           L  LDL+SN L G IP ++ S +  L+ L L+ NQ++  I         LK+L LFDN L
Sbjct: 131 LKVLDLSSNGLVGDIP-WSLSKLRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLL 189

Query: 201 TGQLPELFLNLSGCSKNSLEILKLGGNK-LTGSLP-DITEFSSLQELHLFDNKLDGSFPE 258
           TG +P     LSG     LE++++GGNK ++G +P +I + S+L  L L +  + G+ P 
Sbjct: 190 TGSIPTELGKLSG-----LEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPS 244

Query: 259 KFRKPSPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLD 317
              K   L  L++    + G +P DL     L  L + ++ L+G++   +G+L+KLE L 
Sbjct: 245 SLGKLKKLETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLF 304

Query: 318 LFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNF--SFGWLPPFQLESIGLLHCKLGPH 375
           L+ NSL G I E  + N S LK +D S N L+ +   S G L    LE   +   K    
Sbjct: 305 LWQNSLVGGIPE-EIGNCSNLKMIDLSLNLLSGSIPSSIGRLS--FLEEFMISDNKFSGS 361

Query: 376 FPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSP-----------------------NLY 412
            P  + +  +   L +   +IS  +PS    L+                        +L 
Sbjct: 362 IPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQ 421

Query: 413 YLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL---NLSNNKFSGP 469
            L+LS N L GT+            + L SN   G +P   GN +SL    L  N+ +G 
Sbjct: 422 ALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGE 481

Query: 470 ISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP 529
           I S    S +  ++LD S N L G++PD +     L +++L+NN+  G+        +P 
Sbjct: 482 IPSGIG-SLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGS--------LPN 532

Query: 530 SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLL 589
            +   + L+++D   N+FSG IPA +G  L  L  L L  N F GSIP +L   S +QLL
Sbjct: 533 PVSSLSGLQVLDVSANQFSGKIPASLG-RLVSLNKLILSKNLFSGSIPTSLGMCSGLQLL 591

Query: 590 DFSLNSISGAIPKCINNL 607
           D   N +SG IP  + ++
Sbjct: 592 DLGSNELSGEIPSELGDI 609

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  159 bits (403), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 143/462 (30%), Positives = 230/462 (49%), Gaps = 32/462 (6%)

Query: 170 LNLS-LNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK 228
           LNLS LN    IS + G++  L ++ L  N L+GQ+P+    +  CS  SL+ L L  N+
Sbjct: 73  LNLSDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPD---EIGDCS--SLQNLDLSFNE 127

Query: 229 LTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF- 286
           L+G +P  I++   L++L L +N+L G  P    +   L IL+L  N+L G +P L  + 
Sbjct: 128 LSGDIPFSISKLKQLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIYWN 187

Query: 287 PFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFN 346
             L  L +  + L G +S  L +L+ L + D+  NSL G I E+ + N +  + +D S+N
Sbjct: 188 EVLQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPET-IGNCTAFQVLDLSYN 246

Query: 347 SLA--LNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWF 404
            L   + F  G+L   Q+ ++ L   +L    P  +   +    LD+S   +S ++P   
Sbjct: 247 QLTGEIPFDIGFL---QVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPPIL 303

Query: 405 WDLS--PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL--- 459
            +L+    LY   L  N L G++     N +    ++L+ N   G +PP  G +T L   
Sbjct: 304 GNLTFTEKLY---LHSNKLTGSIPPELGNMSKLHYLELNDNHLTGHIPPELGKLTDLFDL 360

Query: 460 NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNF 519
           N++NN   GPI    S S    + L+V  N  SG +P    + +++  LNL++NN  G  
Sbjct: 361 NVANNDLEGPIPDHLS-SCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKG-- 417

Query: 520 LTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRN 579
                  IP  L +   L  +D  +NK +G IP+ +GD L  L  ++L  N   G +P +
Sbjct: 418 ------PIPVELSRIGNLDTLDLSNNKINGIIPSSLGD-LEHLLKMNLSRNHITGVVPGD 470

Query: 580 LCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTIT 621
              L  I  +D S N ISG IP+ +N L  ++     N+ +T
Sbjct: 471 FGNLRSIMEIDLSNNDISGPIPEELNQLQNIILLRLENNNLT 512

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  157 bits (398), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 142/448 (31%), Positives = 221/448 (49%), Gaps = 32/448 (7%)

Query: 170 LNLS-LNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK 228
           LNLS LN    IS + G++  L+++ L  N L GQ+P+    +  C   SL  +    N 
Sbjct: 78  LNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPD---EIGNCV--SLAYVDFSTNL 132

Query: 229 LTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF- 286
           L G +P  I++   L+ L+L +N+L G  P    +   L  L+L  NQL G +P L  + 
Sbjct: 133 LFGDIPFSISKLKQLEFLNLKNNQLTGPIPATLTQIPNLKTLDLARNQLTGEIPRLLYWN 192

Query: 287 PFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFN 346
             L  L +  + L GT+S  + +L+ L + D+ GN+L G I ES + N +  + +D S+N
Sbjct: 193 EVLQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPES-IGNCTSFEILDVSYN 251

Query: 347 SL--ALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWF 404
            +   + ++ G+L   Q+ ++ L   KL    P+ +   +    LD+SD E++  +P   
Sbjct: 252 QITGVIPYNIGFL---QVATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNELTGPIPPIL 308

Query: 405 WDLS--PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL--- 459
            +LS    LY   L  N L G +     N +    + L+ N+  G +PP  G +  L   
Sbjct: 309 GNLSFTGKLY---LHGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQLFEL 365

Query: 460 NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNF 519
           NL+NN   G I S  S S    +  +V  N LSG +P       +L  LNL++N+F G  
Sbjct: 366 NLANNNLVGLIPSNIS-SCAALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSSNSFKG-- 422

Query: 520 LTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRN 579
                 +IP  L     L  +D   N FSG+IP  +GD L  L IL+L  N  +G++P  
Sbjct: 423 ------KIPAELGHIINLDTLDLSGNNFSGSIPLTLGD-LEHLLILNLSRNHLNGTLPAE 475

Query: 580 LCRLSKIQLLDFSLNSISGAIPKCINNL 607
              L  IQ++D S N ++G IP  +  L
Sbjct: 476 FGNLRSIQIIDVSFNFLAGVIPTELGQL 503

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  156 bits (395), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 153/492 (31%), Positives = 226/492 (45%), Gaps = 65/492 (13%)

Query: 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDN 198
           +NL  LDL+ NQL G IP   F N+  LQ L L+ N +   I    GN   L  L L+DN
Sbjct: 216 ANLTDLDLSGNQLTGKIP-RDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDN 274

Query: 199 NLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEFSSLQELHLFDNKLDGSFP 257
            LTG++P    NL       L+ L++  NKLT S+P  +   + L  L L +N L G   
Sbjct: 275 QLTGKIPAELGNLV-----QLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPIS 329

Query: 258 EKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFL 316
           E+      L +L L  N   G  P  ++    LT L V  + ++G +   LG L+ L  L
Sbjct: 330 EEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNL 389

Query: 317 DLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHF 376
               N L G I  S +SN + LK +D S N +      G+                    
Sbjct: 390 SAHDNLLTGPIPSS-ISNCTGLKLLDLSHNQMTGEIPRGF-------------------- 428

Query: 377 PKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYP 436
                 + N  F+ I     +  +P   ++ S NL  L+++ N+L GT+  L        
Sbjct: 429 -----GRMNLTFISIGRNHFTGEIPDDIFNCS-NLETLSVADNNLTGTLKPLIGKLQKLR 482

Query: 437 GIDLSSNDFEGPVPPVPGNVTSLN---LSNNKFSGPI----SSLCSISGEYFSYLDVSDN 489
            + +S N   GP+P   GN+  LN   L +N F+G I    S+L  + G     L +  N
Sbjct: 483 ILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQG-----LRMYSN 537

Query: 490 LLSGELPDCLLRWQALAVLNLANNNFSGNF---------LTF-------FVGEIPPSLKK 533
            L G +P+ +   + L+VL+L+NN FSG           LT+       F G IP SLK 
Sbjct: 538 DLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKS 597

Query: 534 CNELKIIDAGDNKFSGTIPAWIGDTLPKLAI-LSLRSNQFHGSIPRNLCRLSKIQLLDFS 592
            + L   D  DN  +GTIP  +  +L  + + L+  +N   G+IP+ L +L  +Q +D S
Sbjct: 598 LSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLS 657

Query: 593 LNSISGAIPKCI 604
            N  SG+IP+ +
Sbjct: 658 NNLFSGSIPRSL 669

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  156 bits (395), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 167/559 (29%), Positives = 270/559 (48%), Gaps = 55/559 (9%)

Query: 101 LSINR------PSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAG 154
           LSIN+      P L  +++  +L L++    G   S    L K++     + +  N L G
Sbjct: 149 LSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTE----IAIYDNLLTG 204

Query: 155 PIPDYAFSNMTALQHLNLSLNQIS-AISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSG 213
           PIP  +F N+T L +L L +N +S +I    GN+  L+ L L  NNLTG++P  F NL  
Sbjct: 205 PIPS-SFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKN 263

Query: 214 CSKNSLEILKLGGNKLTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD 272
            +     +L +  N+L+G +P +I   ++L  L L  NKL G  P        L +L+L 
Sbjct: 264 VT-----LLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLY 318

Query: 273 GNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESH 331
            NQL GS+P +L     +  L++S+++L G V +  G+L+ LE+L L  N L G I    
Sbjct: 319 LNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPG- 377

Query: 332 VSNLSKLKYMDFSFNSLALNFSFGWLPPF-----QLESIGLLHCKLGPHFPKWLQSQKNY 386
           ++N ++L  +    N    NF+ G+LP       +LE++ L         PK L+  K+ 
Sbjct: 378 IANSTELTVLQLDTN----NFT-GFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSL 432

Query: 387 YFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGID---LSSN 443
             +       S  +   F  + P L +++LS+N+  G    LS N+     +    LS+N
Sbjct: 433 IRVRFKGNSFSGDISEAF-GVYPTLNFIDLSNNNFHG---QLSANWEQSQKLVAFILSNN 488

Query: 444 DFEGPVPPVPGNVTSL---NLSNNKFSGPI-SSLCSISGEYFSYLDVSDNLLSGELPDCL 499
              G +PP   N+T L   +LS+N+ +G +  S+ +I+    S L ++ N LSG++P  +
Sbjct: 489 SITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNIN--RISKLQLNGNRLSGKIPSGI 546

Query: 500 LRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTL 559
                L  L+L++N FS         EIPP+L     L  ++   N    TIP  +   L
Sbjct: 547 RLLTNLEYLDLSSNRFSS--------EIPPTLNNLPRLYYMNLSRNDLDQTIPEGL-TKL 597

Query: 560 PKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNST 619
            +L +L L  NQ  G I      L  ++ LD S N++SG IP    ++ A+     S++ 
Sbjct: 598 SQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNN 657

Query: 620 ITHIY---VYYRSATLDGF 635
           +         +R+A  D F
Sbjct: 658 LQGPIPDNAAFRNAPPDAF 676

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  156 bits (395), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 162/537 (30%), Positives = 252/537 (46%), Gaps = 45/537 (8%)

Query: 95  LASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLS--NSAYHWL-------FKISSNLLAL 145
           +A + L ++    L+ MN S +L+ L     GL   N + +++         +  +L  L
Sbjct: 61  IACTHLRTVTSVDLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVL 120

Query: 146 DLNSNQLAGPIPDYAFSNMTALQHLNLSLNQI-SAISKSFGNMCGLKTLHLFDNNLTGQL 204
           DL +N+  G IP    + +  L+ L L  N +  +I +  GN+  L+ L ++ NNLTG +
Sbjct: 121 DLCTNRFHGVIP-IQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVI 179

Query: 205 PELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKP 263
           P     L       L I++ G N  +G +P +I+   SL+ L L +N L+GS P++  K 
Sbjct: 180 PPSMAKL-----RQLRIIRAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKL 234

Query: 264 SPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNS 322
             L  L L  N+L G +P  +     L  L + ++   G++   +G+L+K++ L L+ N 
Sbjct: 235 QNLTDLILWQNRLSGEIPPSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQ 294

Query: 323 LEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPP--FQLESIGLLH----CKLGPHF 376
           L G I    + NL     +DFS N L      G++P     + ++ LLH      LGP  
Sbjct: 295 LTGEIPR-EIGNLIDAAEIDFSENQLT-----GFIPKEFGHILNLKLLHLFENILLGP-I 347

Query: 377 PKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYP 436
           P+ L        LD+S   ++  +P     L P L  L L  N LEG +  L   Y+ + 
Sbjct: 348 PRELGELTLLEKLDLSINRLNGTIPQELQFL-PYLVDLQLFDNQLEGKIPPLIGFYSNFS 406

Query: 437 GIDLSSNDFEGPVPPVPGNVTSL---NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSG 493
            +D+S+N   GP+P       +L   +L +NK SG I      + +  + L + DN L+G
Sbjct: 407 VLDMSANSLSGPIPAHFCRFQTLILLSLGSNKLSGNIPRDLK-TCKSLTKLMLGDNQLTG 465

Query: 494 ELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPA 553
            LP  L   Q L  L L  N  SGN        I   L K   L+ +   +N F+G IP 
Sbjct: 466 SLPIELFNLQNLTALELHQNWLSGN--------ISADLGKLKNLERLRLANNNFTGEIPP 517

Query: 554 WIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAM 610
            IG+ L K+   ++ SNQ  G IP+ L     IQ LD S N  SG I + +  L  +
Sbjct: 518 EIGN-LTKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYL 573

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	637
224105891	1036	predicted protein [Populus trichocarpa]	0.794	0.488	0.505	1e-131
255560149	1010	serine-threonine protein kinase, plant-t	0.777	0.490	0.482	1e-128
224097947	1086	predicted protein [Populus trichocarpa]	0.841	0.493	0.476	1e-127
224116866	994	predicted protein [Populus trichocarpa]	0.795	0.510	0.475	1e-126
224116870	1084	predicted protein [Populus trichocarpa]	0.783	0.460	0.491	1e-125
225464712	1021	PREDICTED: receptor-like protein 12-like	0.838	0.523	0.465	1e-121
359490572	975	PREDICTED: probable LRR receptor-like se	0.836	0.546	0.462	1e-118
224105895	963	predicted protein [Populus trichocarpa]	0.791	0.523	0.454	1e-117
224125666	938	predicted protein [Populus trichocarpa]	0.786	0.534	0.462	1e-112
359490576	972	PREDICTED: LRR receptor-like serine/thre	0.843	0.552	0.451	1e-111

>gi|224105891|ref|XP_002333752.1| predicted protein [Populus trichocarpa] gi|222838400|gb|EEE76765.1| predicted protein [Populus trichocarpa]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 270/534 (50%), Positives = 354/534 (66%), Gaps = 28/534 (5%)

Query: 103 INRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFS 162
           I  PSLS +NSS SL ++D S   LS+S +HWL    ++L+ LDL+ N L G IPD  F+
Sbjct: 233 IGSPSLSLVNSSESLAIVDFSFNDLSSSIFHWLANFGNSLIDLDLSHNNLQGSIPD-VFT 291

Query: 163 NMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEIL 222
           NMT+L+ L+LS NQ+     SFG MC L  L + +NNL G+L +LF    GC +NSLEIL
Sbjct: 292 NMTSLRTLDLSSNQLQGDLSSFGQMCSLNKLCISENNLIGELSQLF----GCVENSLEIL 347

Query: 223 KLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD 282
           +L  N+L GSLPDIT F+S++EL+L  N+L+GS PE+F + S LV+L L+ NQL GSL D
Sbjct: 348 QLDRNQLYGSLPDITRFTSMRELNLSGNQLNGSLPERFSQRSELVLLYLNDNQLTGSLTD 407

Query: 283 LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMD 342
           +++   L  L +S++RL+G VSE +G L +LE L + GNSL+G+++E+H SNLSKL  +D
Sbjct: 408 VAMLSSLRELGISNNRLDGNVSESIGSLFQLEKLHVGGNSLQGVMSEAHFSNLSKLTVLD 467

Query: 343 FSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPS 402
            + NSLAL F   W P FQL+ I L  C LGP FP+WL++Q N+  LDIS + ISD +P+
Sbjct: 468 LTDNSLALKFESNWAPTFQLDRIFLSSCDLGPPFPQWLRNQTNFMELDISGSRISDTIPN 527

Query: 403 WFWDLS-PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTS-LN 460
           WFW+LS   L  L+LSHN + G + D S  YA    IDLS N FEGP+P    + TS L 
Sbjct: 528 WFWNLSNSKLELLDLSHNKMSGLLPDFSSKYANLRSIDLSFNQFEGPLPHFSSDTTSTLF 587

Query: 461 LSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFL 520
           LSNNKFS      C I  +    LD+S+NLL+G +PDCL   + L VLNLA+NNFSG   
Sbjct: 588 LSNNKFSASFR--CDIGSDILRVLDLSNNLLTGSIPDCL---RGLVVLNLASNNFSGKIP 642

Query: 521 T----------------FFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAI 564
           +                 FVGE+P SL+ C+ L  +D   NK  G IP WIG+++P L +
Sbjct: 643 SSIGSMLELQTLSLHNNSFVGELPLSLRSCSSLVFLDLSSNKLRGEIPGWIGESMPSLKV 702

Query: 565 LSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNS 618
           LSL+SN F GSIP NLC LS I +LD SLN+ISG IPKC+NNLT+MV+K  S S
Sbjct: 703 LSLQSNGFSGSIPPNLCHLSNILILDLSLNNISGIIPKCLNNLTSMVQKTESES 756

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560149|ref|XP_002521092.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223539661|gb|EEF41243.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/518 (48%), Positives = 340/518 (65%), Gaps = 23/518 (4%)

Query: 134 WLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGLKT 192
           WL  +S+ ++ L+L  +QL GPIP Y F +M +L HL LS NQ+   +  SFGN+C LKT
Sbjct: 267 WLVNVSTVIVHLELQDDQLKGPIP-YFFGDMRSLVHLVLSYNQLEGPMPISFGNLCRLKT 325

Query: 193 LHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKL 252
           L L  N+L+   P+   NL  C+K SLEIL L  N+L GS+PDITEF SL+ELHL  N L
Sbjct: 326 LDLSGNHLSEPFPDFVGNLR-CAKKSLEILSLSNNQLRGSIPDITEFESLRELHLDRNHL 384

Query: 253 DGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSK 312
           DGSFP  F++ S L+ LNL+GN+L G LP  S F  LT L ++++ L+G VSE LG L  
Sbjct: 385 DGSFPPIFKQFSKLLNLNLEGNRLVGPLPSFSKFSSLTELHLANNELSGNVSESLGELFG 444

Query: 313 LEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKL 372
           L  LD   N L G+++E H+SNLS+L+ +D S+NSLALNFS  W P FQL+ I L  C++
Sbjct: 445 LRILDASSNKLNGVVSEVHLSNLSRLQQLDLSYNSLALNFSADWTPSFQLDMIKLSSCRI 504

Query: 373 GPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNY 432
           GPHFP WLQSQ+N+  LDIS++EISD VPSWFW+ S  + YLNLS NHL G V + S  +
Sbjct: 505 GPHFPGWLQSQRNFSHLDISNSEISDVVPSWFWNFSSKIRYLNLSFNHLYGKVPNQSAEF 564

Query: 433 AGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLS 492
              P +DLSSN F G +P    N + LNLS N F+G +S LC++     +YLD+SDN LS
Sbjct: 565 YTLPSVDLSSNLFYGTIPSFLSNTSVLNLSKNAFTGSLSFLCTVMDSGMTYLDLSDNSLS 624

Query: 493 GELPDCLLRWQALAVLNLANNNFSG----------NFLTF------FVGEIPPSLKKCNE 536
           G LPDC  +++ L +LN  NN+ SG          N  T       F GE+P SL+ C++
Sbjct: 625 GGLPDCWAQFKQLVILNFENNDLSGSIPSSMGFLYNIQTLHLRNNSFTGEMPSSLRNCSQ 684

Query: 537 LKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSI 596
           L+++D G NK +G + AWIG++L KL +L LRSN+F+G++   +C L  +Q+LD S N  
Sbjct: 685 LELLDLGGNKLTGKVSAWIGESLTKLIVLRLRSNEFYGNVSSTVCYLRYLQILDLSFNHF 744

Query: 597 SGAIPKCINNLTAMVEKASSNSTITHI----YVYYRSA 630
           SG+IP C++NLTA+ +  +S S + H     Y Y++ +
Sbjct: 745 SGSIPSCLHNLTALAQNQNSTSALIHQFFNGYSYWKGS 782

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097947|ref|XP_002334582.1| predicted protein [Populus trichocarpa] gi|222873265|gb|EEF10396.1| predicted protein [Populus trichocarpa]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/563 (47%), Positives = 366/563 (65%), Gaps = 27/563 (4%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
              ++ SLR L L+ + L  +   + ++M   TSL  LDLS   L  S       ++S L
Sbjct: 290 AFANMISLRTLDLSFNELQGLIPDAFTNM---TSLRTLDLSCNQLQGSIPDAFTNMTS-L 345

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTG 202
             L L+ N L G IPD AF+NMT+ + L+LS NQ+     +FG MC LK LH+  NNLTG
Sbjct: 346 RTLYLSFNHLQGSIPD-AFTNMTSFRTLDLSFNQLQGDLSTFGRMCSLKVLHMSGNNLTG 404

Query: 203 QLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRK 262
           +L +LF +  GC ++SLEIL+L GN+L GS+PDIT F+S+ EL L  N+L+GS P++F +
Sbjct: 405 ELSQLFQDSHGCVESSLEILQLDGNQLHGSVPDITRFTSMTELDLSRNQLNGSLPKRFSQ 464

Query: 263 PSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNS 322
            S +VIL L+ NQL GSL D+++   L    ++++RL+G VSE +G L +LE LD+  NS
Sbjct: 465 RSEIVILYLNDNQLTGSLADVTMLSSLREFVIANNRLDGNVSESIGSLYQLEQLDVGRNS 524

Query: 323 LEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQS 382
           L+G+++E+H SNLSKL  +D + NSLAL F   W P FQL+ I L  C LGPHFP+WL++
Sbjct: 525 LQGVMSEAHFSNLSKLTVLDLTDNSLALKFESNWAPTFQLDRIFLSSCNLGPHFPQWLRN 584

Query: 383 QKNYYFLDISDTEISDAVPSWFWDLS-PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLS 441
           Q N+  LDIS + ISD VP+WFW+LS   L  LNLSHN + G + D S  Y+    +DLS
Sbjct: 585 QNNFMELDISGSRISDTVPNWFWNLSNSKLQLLNLSHNKMSGILPDFSSKYSILRNMDLS 644

Query: 442 SNDFEGPVPPVPGN-VTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLL 500
            N FEGP+P    + +++L LSNNKFSG  S LC+I G   S LD+S+NLL+G +PDC +
Sbjct: 645 FNQFEGPLPLFSSDTISTLFLSNNKFSGSASFLCNI-GRNISVLDLSNNLLTGWIPDCSM 703

Query: 501 RWQALAVLNLANNNFSGNFLT----------------FFVGEIPPSLKKCNELKIIDAGD 544
            +  L +LN A+NNFSG   +                 FVGE+P SL+KC  L  +D   
Sbjct: 704 NFTRLNILNFASNNFSGKIPSSIGSMFHLQTLSLHNNSFVGELPSSLRKCTSLVFLDLSS 763

Query: 545 NKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCI 604
           N   G IP WIG+++P L +LSL+SN F+GSIP+NLC LS I +LD SLN+ISG IPKC+
Sbjct: 764 NMLRGEIPGWIGESMPSLEVLSLQSNGFNGSIPQNLCHLSNILILDLSLNNISGIIPKCL 823

Query: 605 NNLTAMVEKASS---NSTITHIY 624
           NNLT MV K +S   N+ ++ +Y
Sbjct: 824 NNLTFMVRKTASEYLNNAVSSLY 846

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116866|ref|XP_002331833.1| predicted protein [Populus trichocarpa] gi|222875071|gb|EEF12202.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 263/553 (47%), Positives = 354/553 (64%), Gaps = 46/553 (8%)

Query: 103 INRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFS 162
           I  PSLS +NSS SL ++D S   LS+S +HWL    ++L+ LDL+ N L G IPD  F+
Sbjct: 233 IGSPSLSLVNSSESLAIVDFSFNDLSSSIFHWLANFGNSLIDLDLSHNNLQGSIPD-VFT 291

Query: 163 NMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEIL 222
           NMT+L+ L+LS NQ+     SFG MC L  L + +NNL G+L +LF    GC +NSLEIL
Sbjct: 292 NMTSLRTLDLSSNQLQGDLSSFGQMCSLNKLCISENNLIGELSQLF----GCVENSLEIL 347

Query: 223 KLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD 282
           +L  N+L GSLPDIT F+S++EL+L  N+L+GS PE+F + S LV+L L+ NQL GSL D
Sbjct: 348 QLDRNQLYGSLPDITRFTSMRELNLSGNQLNGSLPERFSQRSELVLLYLNDNQLTGSLTD 407

Query: 283 LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMD 342
           +++   L  L +S++RL+G VSE +G L +LE L + GNSL+G+++E+H SNLSKL  +D
Sbjct: 408 VAMLSSLRELGISNNRLDGNVSESIGSLFQLEKLHVGGNSLQGVMSEAHFSNLSKLTVLD 467

Query: 343 FSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPS 402
            + NSLAL F   W P FQL+ I L  C LGP FP+WL++Q N+  LDIS + ISD +P+
Sbjct: 468 LTDNSLALKFESNWAPTFQLDRIFLSSCDLGPPFPQWLRNQTNFMELDISGSRISDTIPN 527

Query: 403 WFWDLS-PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNL 461
           WFW+LS   L  L+LSHN + G + D S  YA    IDLS N FEGP             
Sbjct: 528 WFWNLSNSKLELLDLSHNKMSGLLPDFSSKYANLRSIDLSFNQFEGPA------------ 575

Query: 462 SNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLT 521
                    S  C+I       LD+S+NLL G +PDCL+ + +L+VLNLA+NNFSG  L+
Sbjct: 576 ---------SCPCNIGSGILKVLDLSNNLLRGWIPDCLMNFTSLSVLNLASNNFSGKILS 626

Query: 522 ----------------FFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAIL 565
                            FVGE+P SL+ C+ L  +D   NK  G IP WIG+++P L +L
Sbjct: 627 SIGSMVYLKTLSLHNNSFVGELPLSLRNCSSLAFLDLSSNKLRGEIPGWIGESMPSLKVL 686

Query: 566 SLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYV 625
           SLRSN F+GSI  NLC LS I +LD SLN+I+G IPKC+NNLT+MV+K  S  ++ +  V
Sbjct: 687 SLRSNGFNGSILPNLCHLSNILILDLSLNNITGIIPKCLNNLTSMVQKTESEYSLANNAV 746

Query: 626 ---YYRSATLDGF 635
              Y+ S + D +
Sbjct: 747 LSPYFTSDSYDAY 759

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116870|ref|XP_002331834.1| predicted protein [Populus trichocarpa] gi|222875072|gb|EEF12203.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 256/521 (49%), Positives = 347/521 (66%), Gaps = 22/521 (4%)

Query: 136 FKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHL 195
           F   ++L  LDL+ NQL G  P+ AF+NM +L+ L+LS NQ+     SFG MC L  L++
Sbjct: 357 FTNMTSLRTLDLSCNQLQGSNPE-AFANMISLRTLHLSSNQLQGDLSSFGQMCSLNKLYI 415

Query: 196 FDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGS 255
            +N+LTG+L  LF +L GC +NSLEIL+L  N+L GS+PDIT F+S++EL L  N+L+GS
Sbjct: 416 SENSLTGELSRLFQDLHGCVENSLEILQLDENQLHGSVPDITRFTSMRELVLSRNQLNGS 475

Query: 256 FPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEF 315
            P++F + S LV+L LD NQL GS+ D+++   L  L ++++RL+G VSE +G LS+LE 
Sbjct: 476 LPKRFSQRSKLVLLYLDDNQLTGSVTDVTMLSSLRELVIANNRLDGNVSESIGGLSQLEK 535

Query: 316 LDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPH 375
           LD   NSL+G+++E+H SNLSKL  +D + NSLAL F   W P FQL+ I L  C LGP 
Sbjct: 536 LDAGRNSLQGVMSEAHFSNLSKLTVLDLTDNSLALKFESNWAPTFQLDDIFLSSCNLGPP 595

Query: 376 FPKWLQSQKNYYFLDISDTEISDAVPSWFWDLS-PNLYYLNLSHNHLEGTVLDLSLNYAG 434
           FP+WL++Q N+  LDIS + ISD +P+WFW+LS   L  LNLSHN + G + D S  Y+ 
Sbjct: 596 FPQWLRNQNNFIKLDISGSGISDTIPNWFWNLSNSKLQLLNLSHNRMCGILPDFSSKYSN 655

Query: 435 YPGIDLSSNDFEGPVPPVPGNVTS-LNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSG 493
              IDLS N FEG +P    + TS L LSNNKFSGP S  C+I       LD+S+NLL G
Sbjct: 656 LLHIDLSFNQFEGRLPLFSSDTTSTLFLSNNKFSGPASCPCNIGSGILKVLDLSNNLLRG 715

Query: 494 ELPDCLLRWQALAVLNLANNNFSGNFLT----------------FFVGEIPPSLKKCNEL 537
            +PDCL+ + +L+VLNLA+NNFSG  L+                 FVGE+P SL+ C+ L
Sbjct: 716 WIPDCLMNFTSLSVLNLASNNFSGKILSSIGSMVYLKTLSLHNNSFVGELPLSLRNCSSL 775

Query: 538 KIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
             +D   NK  G IP WIG+++P L +LSLRSN F+GSI  NLC LS I +LD SLN+I+
Sbjct: 776 AFLDLSSNKLRGEIPGWIGESMPSLKVLSLRSNGFNGSILPNLCHLSNILILDLSLNNIT 835

Query: 598 GAIPKCINNLTAMVEKASSNSTITHIYV---YYRSATLDGF 635
           G IPKC+NNLT+MV+K  S  ++ +  V   Y+ S + D +
Sbjct: 836 GIIPKCLNNLTSMVQKTESEYSLANNAVLSPYFTSDSYDAY 876

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 264/567 (46%), Positives = 347/567 (61%), Gaps = 33/567 (5%)

Query: 83  TITSLASLRDLYLASSTLLSINRPS-LSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSN 141
            I  L SL DL L  S L  I  PS LS  NSS SL +LDLS   LS+S Y WLF +SS+
Sbjct: 227 VINRLPSLTDLLLHDSALPQIITPSALSYTNSSKSLVVLDLSWNFLSSSVYPWLFNLSSS 286

Query: 142 LLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLT 201
           L+ LDL+ NQ+ G IPD  F  M +L++L+L  NQ+            L  L L  N+L 
Sbjct: 287 LVHLDLSINQIQGLIPD-TFGEMVSLEYLDLFFNQLEGEIPQSLTSTSLVHLDLSVNHLH 345

Query: 202 GQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKF 260
           G +P+ F +++     SL  L L  N+L G +P       SLQ + L  N L    PE  
Sbjct: 346 GSIPDTFGHMT-----SLSYLDLSLNQLEGGIPKSFKNLCSLQMVMLLSNSLTAQLPEFV 400

Query: 261 R-----KPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEF 315
           +         L +L L  NQ  GS P+ + F  L  L +  +RLNGT  E +G+LS+LE 
Sbjct: 401 QNSLSCSKDTLEVLVLSWNQFTGSFPNFTGFSVLGHLYIDHNRLNGTFPEHIGQLSQLEV 460

Query: 316 LDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPH 375
           L++ GNSL G ITE+H+S+LSKL ++D S NSLAL  S  W PPFQ+  +GLL CK+GP+
Sbjct: 461 LEISGNSLHGNITEAHLSSLSKLYWLDLSSNSLALELSPEWTPPFQVGYLGLLSCKMGPN 520

Query: 376 FPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGY 435
           FP WLQ+QK+ + LDIS++ ISD +PSWFW+L+  L  L +++N + G V  L +  A  
Sbjct: 521 FPGWLQTQKDLFSLDISNSSISDVIPSWFWNLTSKLIKLRIANNQIRGRVPSLRMETAAV 580

Query: 436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGEL 495
             IDLS N FEGP+P +P  V  L+LS N FSG IS LC+I     SYLD+SDNLLSG L
Sbjct: 581 --IDLSLNRFEGPIPSLPSGVRVLSLSKNLFSGSISLLCTIVDGALSYLDLSDNLLSGAL 638

Query: 496 PDCLLRWQ-ALAVLNLANNNFSGN----------------FLTFFVGEIPPSLKKCNELK 538
           PDC  +W+  L +LNLANNNFSG                 +   F+GE+P SL  C +L+
Sbjct: 639 PDCWQQWRDQLQILNLANNNFSGKLPYSLGSLAALQTLHLYNNGFLGELPSSLMNCTKLR 698

Query: 539 IIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG 598
           ++D G N+FSG IP WIG+ L  L +LSLRSN+FHGSI  ++C L ++Q+LDFS N+ISG
Sbjct: 699 LVDMGKNRFSGEIPTWIGERLSDLVVLSLRSNEFHGSISSDICLLKELQILDFSRNNISG 758

Query: 599 AIPKCINNLTAMVEKASSNSTITHIYV 625
            IP+C+NN TAM +K    S I H Y+
Sbjct: 759 TIPRCLNNFTAMAQKMIY-SVIAHDYL 784

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 261/564 (46%), Positives = 350/564 (62%), Gaps = 31/564 (5%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
            I  L SL DL L S  L S   PSLS + SS SL +LDLS   LS S Y WLF  +S+L
Sbjct: 209 AINKLPSLIDLLLKSCDLPSPITPSLSLVTSSMSLAVLDLSCNQLSTSIYPWLFNFNSSL 268

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNNLT 201
           + LDL+ N L    PD AF NM +L++L+LS NQ+   I KSF +   L  L L +N L 
Sbjct: 269 VHLDLSYNHLQASPPD-AFGNMVSLEYLDLSWNQLKGEIPKSFSS--SLVFLDLSNNQLQ 325

Query: 202 GQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKF 260
           G +P+ F N++     SL  + L  N+L G +P       +LQ L L  N L G   +  
Sbjct: 326 GSIPDTFGNMT-----SLRTVNLTRNQLEGEIPKSFNNLCNLQILKLHRNNLAGVLVKNL 380

Query: 261 RKPS--PLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDL 318
              +   L IL+L  NQ  GSLPDL  F  LTRL +  ++LNGT+ E + +L++LE L +
Sbjct: 381 LACANDTLEILDLSHNQFIGSLPDLIGFSSLTRLHLGHNQLNGTLPESIAQLAQLELLKI 440

Query: 319 FGNSLEGMITESHVSNLSKLKYMDFSFNSL-ALNFSFGWLPPFQLESIGLLHCKLGPHFP 377
             NSL+G ++E+H+ +LSKL+ +D SFNSL  LN S  W+P FQL  I L  CKLGP FP
Sbjct: 441 PSNSLQGTVSEAHLFSLSKLQRLDLSFNSLLTLNLSSDWVPQFQLTHIFLASCKLGPRFP 500

Query: 378 KWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPG 437
            WL++QK   +LDIS + ISD +P+WFW+ + NL  LN+S+N + G V + S+ ++ +P 
Sbjct: 501 GWLRTQKGVGWLDISGSGISDVIPNWFWNFTSNLNRLNISNNQITGVVPNASIEFSRFPQ 560

Query: 438 IDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD 497
           +D+SSN FEG +P        L+LS N FSG ISSLC++S    +YLD+S+NLLSGELP+
Sbjct: 561 MDMSSNYFEGSIPVFIFYAGWLDLSKNMFSGSISSLCAVSRGASAYLDLSNNLLSGELPN 620

Query: 498 CLLRWQALAVLNLANNNFSGNFL----------------TFFVGEIPPSLKKCNELKIID 541
           C  +W+ L VLNL NNNFSG                       GE+P SLK C +L++ID
Sbjct: 621 CWAQWEGLVVLNLENNNFSGKIQDSIGSLEAIESLHLRNNKLTGELPLSLKNCTKLRVID 680

Query: 542 AGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP 601
            G NK  G IP+WIG +LP L +L+LR N+F+GSIP ++C+L KIQ+LD S N+ISG IP
Sbjct: 681 LGRNKLCGNIPSWIGRSLPNLVVLNLRFNEFYGSIPMDMCQLKKIQILDLSNNNISGMIP 740

Query: 602 KCINNLTAMVEKASSNSTITHIYV 625
           +C NN TAMV++ S    IT+ Y 
Sbjct: 741 RCFNNFTAMVQQGS--LVITYNYT 762

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105895|ref|XP_002333753.1| predicted protein [Populus trichocarpa] gi|222838401|gb|EEE76766.1| predicted protein [Populus trichocarpa]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 260/572 (45%), Positives = 348/572 (60%), Gaps = 68/572 (11%)

Query: 74  ITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYH 133
           ++  N  +  +T+L  L+DL L   +L  I    LS MNSS  L +L LS+  LS++ Y 
Sbjct: 196 LSKVNDWLQVVTNLPRLKDLRLNQCSLTDIIPSPLSFMNSSKFLAVLHLSNNNLSSAIYP 255

Query: 134 WLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQI-SAISKSFGNMCGLKT 192
           WL+ +S++L  LDL+ NQL G +PD  F  M+AL +L LS NQ+   I +S G MC L T
Sbjct: 256 WLYNLSNSLADLDLSGNQLQGLVPD-GFRKMSALTNLVLSRNQLEGGIPRSLGEMCSLHT 314

Query: 193 LHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKL 252
           L L  NNLTG+L +L  NL G +++SLEIL+L  N+L GSL DI  FSSL+EL + +N+L
Sbjct: 315 LDLCHNNLTGELSDLTRNLYGRTESSLEILRLCQNQLRGSLTDIARFSSLRELDISNNQL 374

Query: 253 DGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSK 312
           +GS PE                                                +G LSK
Sbjct: 375 NGSIPES-----------------------------------------------IGFLSK 387

Query: 313 LEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKL 372
           L++ D+  NSL+G+++  H SNLSKLK++D S+NSL L F   W P FQL++I L  C L
Sbjct: 388 LDYFDVSFNSLQGLVSGGHFSNLSKLKHLDLSYNSLVLRFKSDWDPAFQLKNIHLSSCHL 447

Query: 373 GPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNY 432
           GP FPKWL++Q     LDIS   ISD VP+WFW+L P L +LN+SHN + GT+ D S   
Sbjct: 448 GPCFPKWLRTQIKVRLLDISSASISDTVPNWFWNLLPKLAFLNISHNLMRGTLPDFSSVD 507

Query: 433 A---GYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDN 489
           A    +PG DLS N FEG +P  P N  SL LSNN FSGPIS +C+I G+  S+LD+S+N
Sbjct: 508 AVDDTFPGFDLSFNRFEGLLPAFPFNTASLILSNNLFSGPISLICNIVGKDLSFLDLSNN 567

Query: 490 LLSGELPDCLLRWQALAVLNLANNNFSGNFLT----------------FFVGEIPPSLKK 533
           LL+G+LP+C + W  L VLNLANNN SG   +                   GE+P SLK 
Sbjct: 568 LLTGQLPNCFMNWSTLVVLNLANNNLSGEIPSSVGSLFSLQTLSLNKNSLYGELPMSLKN 627

Query: 534 CNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSL 593
           C+ LK +D   N+ SG IPAWIG++L  L  LSL+SN+F GSIP +LC+L+ +++LD S 
Sbjct: 628 CSMLKFLDLSRNQLSGEIPAWIGESLSSLMFLSLKSNEFIGSIPLHLCQLTNLRILDLSQ 687

Query: 594 NSISGAIPKCINNLTAMVEKASSNSTITHIYV 625
           N+ISGAIPKC+NNLT MV K  + + I ++Y+
Sbjct: 688 NTISGAIPKCLNNLTTMVLKGEAETIIDNLYL 719

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125666|ref|XP_002329688.1| predicted protein [Populus trichocarpa] gi|222870596|gb|EEF07727.1| predicted protein [Populus trichocarpa]

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 251/543 (46%), Positives = 338/543 (62%), Gaps = 42/543 (7%)

Query: 74  ITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYH 133
           +T  +  I  +  L  L+DL L+  +LLSI  P+LS +NSS SL +LDLS   LS+S   
Sbjct: 192 LTQASDWIQVVNKLPRLKDLQLSDCSLLSIVPPALSFVNSSRSLAILDLSFNHLSSSIVP 251

Query: 134 WLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGLKT 192
           WL   S +L+ LDL++NQL G IPD AF  MT+L +L+L+ NQ+   I +SFG MC L+ 
Sbjct: 252 WLSNSSDSLVDLDLSANQLQGSIPD-AFGKMTSLTNLHLADNQLEGGIPRSFGGMCSLRE 310

Query: 193 LHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKL 252
           L L  NNL+G LP    N+ GC +NSL+ L+L  N+L GSLPD T FSS+ EL +  NKL
Sbjct: 311 LDLSPNNLSGPLPRSIRNMHGCVENSLKSLQLRDNQLHGSLPDFTRFSSVTELDISHNKL 370

Query: 253 DGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSK 312
           +GS P++FR+ S LV LNL  NQL GSLPD+++   L    + ++RL+G  SE +G LS+
Sbjct: 371 NGSLPKRFRQRSELVSLNLSDNQLTGSLPDVTMLSSLREFLIYNNRLDGNASESIGSLSQ 430

Query: 313 LEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKL 372
           LE L++  NSL+G+++E+H SNLSKL+ +D S NSL L F++ W PPF L  + L  C L
Sbjct: 431 LEKLNVGRNSLQGVMSEAHFSNLSKLQELDLSHNSLVLKFTYDWAPPFLLNYLYLSSCNL 490

Query: 373 GPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLS-PNLYYLNLSHNHLEGTVLDLSLN 431
           GPHFP+WL++Q N + LDIS T ISD +P+WFWDLS  +L  LN SHN++ G  L     
Sbjct: 491 GPHFPQWLRNQNNLWVLDISGTGISDTIPNWFWDLSNSSLTLLNFSHNNMRGPQL----- 545

Query: 432 YAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLL 491
                 +DLS N   G +P                    +SL    G  F  LD++ N  
Sbjct: 546 ----ISLDLSKNLLSGNLP--------------------NSLIPFDGLAF--LDLAHNNF 579

Query: 492 SGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTI 551
           SG +P  L     L  LNL N++FS          +P SLKKC +L  +D   NK  G I
Sbjct: 580 SGRIPRSLGSLSMLRTLNLRNHSFS--------RRLPLSLKKCTDLMFLDLSINKLHGKI 631

Query: 552 PAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMV 611
           PAW+G++L  L  L L+SN+FHGSIP + CRL  I++L+ SLN+ISG IPKC+NN TAM+
Sbjct: 632 PAWMGESLLSLKFLFLQSNEFHGSIPSHFCRLRHIKILNLSLNNISGIIPKCLNNYTAMI 691

Query: 612 EKA 614
           +K 
Sbjct: 692 QKG 694

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490576|ref|XP_003634117.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 259/574 (45%), Positives = 351/574 (61%), Gaps = 37/574 (6%)

Query: 83  TITSLASLRDLYLASSTLLSI-NRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSN 141
            I  + SL +LYL  + L SI    S+S +NSSTSL +L L S GL++S Y WLF  SS+
Sbjct: 183 AINKMPSLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLPSNGLTSSIYPWLFNFSSS 242

Query: 142 LLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQI-SAISKSFGNMCGLKTLHLFDNNL 200
           L+ LDL+ N L G  PD AF NMT L +L+LS N++  +I  +FGNM  L  L L  N L
Sbjct: 243 LVHLDLSWNDLNGSTPD-AFGNMTTLAYLDLSSNELRGSIPDAFGNMTTLAYLDLSWNKL 301

Query: 201 TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEK 259
            G +P+ F N++     SL  L L  N+L G +P  +T+  +LQEL L  N L G   EK
Sbjct: 302 RGSIPDAFGNMT-----SLAYLDLSLNELEGEIPKSLTDLCNLQELWLSQNNLTG-LKEK 355

Query: 260 FRKPSP---LVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFL 316
                P   L +L+L  NQL GS P+LS F  L  L +  ++L GT+ E +G+L++L+ L
Sbjct: 356 DYLACPNNTLEVLDLSYNQLKGSFPNLSGFSQLRELFLDFNQLKGTLHESIGQLAQLQLL 415

Query: 317 DLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHF 376
            +  NSL G ++ +H+  LS L Y+D SFNSL  N S   +P F+  SI L  CKLGP F
Sbjct: 416 SIPSNSLRGTVSANHLFGLSNLSYLDLSFNSLTFNISLEQVPQFRASSILLASCKLGPRF 475

Query: 377 PKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYP 436
           P WLQ+Q+    LDIS + ISD +P+WFW+L+ +L +LN+S+NH+ GT+ +L      Y 
Sbjct: 476 PNWLQTQEVLSELDISASGISDVIPNWFWNLTSDLNWLNISNNHISGTLPNLQ--ARSYL 533

Query: 437 GIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGE---YFSYLDVSDNLLSG 493
           G+D+SSN  EG +P    N   L+LS N FSG IS  C    +     S+LD+S+N LSG
Sbjct: 534 GMDMSSNCLEGSIPQSVFNARWLDLSKNLFSGSISLSCGTPNQPSWGLSHLDLSNNRLSG 593

Query: 494 ELPDCLLRWQALAVLNLANNNFSGNFL----------------TFFVGEIPPSLKKCNEL 537
           ELP+C  +W+ L VL+LANNNFSG                     F G +P SLK C  L
Sbjct: 594 ELPNCWEQWKDLIVLDLANNNFSGKIKNSIGLLHQMQTLHLCNNSFTGALPSSLKNCRAL 653

Query: 538 KIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
           ++ID G NK SG I AW+G +L  L +L+LRSN+F+GSIP +LC+L +IQ+LD S N++S
Sbjct: 654 RLIDLGKNKLSGKITAWMGGSLSDLIVLNLRSNEFNGSIPSSLCQLKQIQMLDLSSNNLS 713

Query: 598 GAIPKCINNLTAMVEKAS---SNSTITHIYVYYR 628
           G IPKC+ NLTAM +K S   S  TI ++ + Y 
Sbjct: 714 GKIPKCLKNLTAMAQKGSPVLSYETIYNLSIPYH 747

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	637
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.701	0.493	0.309	1.3e-45
TAIR|locus:2137296	811	RLP46 "receptor like protein 4	0.733	0.575	0.292	1.9e-41
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.670	0.504	0.286	3.3e-39
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.659	0.566	0.289	1.9e-36
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.725	0.534	0.266	8.8e-36
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.668	0.478	0.296	1.8e-35
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.678	0.378	0.287	2.2e-35
TAIR|locus:2825389	784	RLP11 "AT1G71390" [Arabidopsis	0.665	0.540	0.282	1.4e-34
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.690	0.351	0.277	5.9e-34
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.704	0.359	0.280	7.8e-34

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 148/478 (30%), Positives = 223/478 (46%)

Query:   155 PIPDYAFSNMTALQHLNLSLNQIS-AISKSFGNMCGLKTLHLFDN-NLTGQLPELFLNLS 212
             PIP++ F  +T L+ L L  + +  +I   F N+  L+TL L +N  L G++P +  +L 
Sbjct:   262 PIPNWLFG-LTNLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQGEIPSVLGDLP 320

Query:   213 GCSKNSLEILKLGGNKLTGSLPDITE-FS-----SLQELHLFDNKLDGSFPEKFRKPSPL 266
                   L+ L L  N+L G +    + FS     SL  L L  NKL G+ PE       L
Sbjct:   321 -----QLKFLDLSANELNGQIHGFLDAFSRNKGNSLVFLDLSSNKLAGTLPESLGSLRNL 375

Query:   267 VILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
               L+L  N   GS+P  +     L +LD+S++ +NGT++E LG+L++L  L+L  N+  G
Sbjct:   376 QTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIAESLGQLAELVDLNLMANTWGG 435

Query:   326 MITESHVSNLSKLKYMDXXXXXXXXXXX---XGWLPPFQLESIGLLHCKLGPHFPKWLQS 382
             ++ +SH  NL  LK +                 W+PPF+LE I + +C++G  FP WLQ 
Sbjct:   436 VLQKSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPFRLELIQIENCRIGL-FPMWLQV 494

Query:   383 QKNYYFLDISDTEISDAVP-SWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLS 441
             Q    F+ + +T I D +P SWF                 +G  L   L +     IDLS
Sbjct:   495 QTKLNFVTLRNTGIEDTIPDSWFSGISSKVTYLILANNRIKGR-LPQKLAFPKLNTIDLS 553

Query:   442 SNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLR 501
             SN+FEG  P    N T L L  N FSG +     +       + +  N  +G +P  L  
Sbjct:   554 SNNFEGTFPLWSTNATELRLYENNFSGSLPQNIDVLMPRMEKIYLFSNSFTGNIPSSLCE 613

Query:   502 WQXXXXXXXXXXXFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPK 561
                          FSG+F        P    +   L  ID  +N  SG IP  +G  LP 
Sbjct:   614 VSGLQILSLRKNHFSGSF--------PKCWHRQFMLWGIDVSENNLSGEIPESLG-MLPS 664

Query:   562 LAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAM-VEKASSNS 618
             L++L L  N   G IP +L   S +  +D   N ++G +P  +  L+++ + +  SNS
Sbjct:   665 LSVLLLNQNSLEGKIPESLRNCSGLTNIDLGGNKLTGKLPSWVGKLSSLFMLRLQSNS 722

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 1.9e-41, P = 1.9e-41
 Identities = 146/499 (29%), Positives = 224/499 (44%)

Query:   154 GPIPDYAFSNMTALQHLNLSLNQIS-AISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLS 212
             G IP YAF N+T+L  L++  N+ + +I     ++  L+ L L  N + G L      L 
Sbjct:   119 GEIPGYAFVNLTSLISLDMCCNRFNGSIPHELFSLTNLQRLDLSRNVIGGTLSGDIKEL- 177

Query:   213 GCSKNSLEILKLGGNKLTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNL 271
                KN  E++ L  N + G++P +I     L  L L  N  + S P    + + L  ++L
Sbjct:   178 ---KNLQELI-LDENLIGGAIPSEIGSLVELLTLTLRQNMFNSSIPSSVSRLTKLKTIDL 233

Query:   272 DGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNS-LEGMITE 329
               N L   +PD +     L+ L +S ++L+G +   +  L  LE L L  N+ L G I  
Sbjct:   234 QNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIPSSIHNLKNLETLQLENNNGLSGEIPA 293

Query:   330 SHVSNLSKLKYMDXXXXXXXXXXXXGWL-PPFQLESIGLLHCKLGPHFPKWLQSQKNYYF 388
             + +  L KLK +             G++ P F+L  + L  C L  + P WL++Q    +
Sbjct:   294 AWLFGLQKLKVLRLEGNNKLQWNNNGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVY 353

Query:   389 LDISDTEISDAVPSWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDFEGP 448
             LD+S   +    P W  D                G++            + LS N+F G 
Sbjct:   354 LDLSINRLEGRFPKWLADLKIRNITLSDNRLT--GSLPPNLFQRPSLYYLVLSRNNFSGQ 411

Query:   449 VPPVPGN--VTSLNLSNNKFSGPI-SSLCSISGEYFSYLDVSDNLLSGELP----DCLLR 501
             +P   G   V  L LS N FSG +  S+  I   +   LD+S N LSGE P    +  L 
Sbjct:   412 IPDTIGESQVMVLMLSENNFSGSVPKSITKIP--FLKLLDLSKNRLSGEFPRFRPESYLE 469

Query:   502 WQXXXXXXXXX---XXFSGN--FLTF----FVGEIPPSLKKCNELKIIDAGDNKFSGTIP 552
             W               F G+   L      F GE P + +  + L  +D  DNK SGT+ 
Sbjct:   470 WLDISSNEFSGDVPAYFGGSTSMLLMSQNNFSGEFPQNFRNLSYLIRLDLHDNKISGTVA 529

Query:   553 AWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVE 612
             + I      + +LSLR+N   GSIP  +  L+ +++LD S N++ G +P  + NLT M+ 
Sbjct:   530 SLISQLSSSVEVLSLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGNLTCMI- 588

Query:   613 KASSNSTITHIYVYYRSAT 631
             K+   S +T I  Y+ S T
Sbjct:   589 KSPEPSAMT-IRPYFSSYT 606

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 3.3e-39, Sum P(2) = 3.3e-39
 Identities = 131/457 (28%), Positives = 206/457 (45%)

Query:   154 GPIPDYAFSNMTALQHLNLSLNQ-ISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLS 212
             G IP  +  N++ L +L L  N+ +  I  S G++  L+ L L  NNL G++P    NLS
Sbjct:   172 GEIPS-SLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLS 230

Query:   213 GCSKNSLEILKLGGNKLTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNL 271
                  +L  L L  N+L G +P  I     L+ +   +N L G+ P  F   + L I  L
Sbjct:   231 -----NLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVL 285

Query:   272 DGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITES 330
               N    + P D+S+F  L   DVS +  +G   + L  +  LE + L  N   G I  +
Sbjct:   286 SSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFA 345

Query:   331 HVSNLSKLKYMDXXXXXXXXXXXXGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLD 390
             + S+ +KL+ +                    LE + + H       P  +    N   LD
Sbjct:   346 NTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLLHLD 405

Query:   391 ISDTEISDAVPSWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDFEGPVP 450
             +S   +   VP+  W                E T  + +L       +DL+SN F+GP+P
Sbjct:   406 LSKNNLEGEVPACLW-RLNTMVLSHNSFSSFENTSQEEAL----IEELDLNSNSFQGPIP 460

Query:   451 PVPGNVTSL---NLSNNKFSGPISS-LCSISGEYFSYLDVSDNLLSGELPDCLLRWQXXX 506
              +   ++SL   +LSNN FSG I S + + SG     L++ DN  SG LPD   +     
Sbjct:   461 YMICKLSSLGFLDLSNNLFSGSIPSCIRNFSGS-IKELNLGDNNFSGTLPDIFSK----- 514

Query:   507 XXXXXXXXFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILS 566
                      S N L    G+ P SL  C  L++++   NK     P+W+ ++LP L +L+
Sbjct:   515 ATELVSLDVSHNQLE---GKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLN 570

Query:   567 LRSNQFHGSIPRNLCRLS--KIQLLDFSLNSISGAIP 601
             LRSN+F+G +      +    ++++D S N+ SG +P
Sbjct:   571 LRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLP 607

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 1.9e-36, Sum P(2) = 1.9e-36
 Identities = 138/476 (28%), Positives = 214/476 (44%)

Query:   153 AGPIPDYAFSNMTALQHLNL-SLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNL 211
             +G +PD +  N+  L+ L L + N    I  S GN+  L  L L  N+ T + P+   NL
Sbjct:    63 SGILPD-SIGNLKRLKVLVLVNCNLFGKIPSSLGNLSYLTHLDLSYNDFTSEGPDSMGNL 121

Query:   212 SGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNL 271
                            N+LT  L    + SS+  + L DN+L G  P      S L   ++
Sbjct:   122 ---------------NRLTDML---LKLSSVTWIDLGDNQLKGMLPSNMSSLSKLEAFDI 163

Query:   272 DGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEG-LGRLSKLEFLDLFGNSLEGMITE 329
              GN   G++P  L + P L  L +  +  +G    G +   S L+ L++  N+    I +
Sbjct:   164 SGNSFSGTIPSSLFMIPSLILLHLGRNDFSGPFEIGNISSPSNLQLLNIGRNNFNPDIVD 223

Query:   330 SHV-SNLSKLKYMDXXXXXXXXXXXXGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYF 388
               + S L  L Y+D                P  +E +GLL C +   FPK+L++Q +  +
Sbjct:   224 LSIFSPLLSLGYLDVSGINLKISSTVSL--PSPIEYLGLLSCNIS-EFPKFLRNQTSLEY 280

Query:   389 LDISDTEISDAVPSWFWDX--XXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDFE 446
             LDIS  +I   VP W W                  EG   D+         +D+SSN F+
Sbjct:   281 LDISANQIEGQVPEWLWSLPELRYVNISHNSFNGFEGPA-DVIQGGRELLVLDISSNIFQ 339

Query:   447 GPVPPVPGNVTSLNL---SNNKFSGPI-SSLCSISGEYFSYLDVSDNLLSGELPDCL--- 499
              P P +P  V S+N    SNN+FSG I  ++C +       L +S+N  SG +P C    
Sbjct:   340 DPFPLLP--VVSMNYLFSSNNRFSGEIPKTICELDN--LRILVLSNNNFSGSIPRCFENL 395

Query:   500 ------LRWQXXXXXXXXXXXFSGNFLTF------FVGEIPPSLKKCNELKIIDAGDNKF 547
                   LR              S +  +F      F GE+P SL  C++++ ++  DN+ 
Sbjct:   396 HLYVLHLR-NNNLSGIFPEEAISHHLQSFDVGHNLFSGELPKSLINCSDIEFLNVEDNRI 454

Query:   548 SGTIPAWIGDTLPKLAILSLRSNQFHGSI--PRNLCRLSKIQLLDFSLNSISGAIP 601
             + T P+W+ + LP L IL LRSN+F+G I  P +    S++++ D S N  +G +P
Sbjct:   455 NDTFPSWL-ELLPNLQILVLRSNEFYGPIFSPGDSLSFSRLRIFDISENRFTGVLP 509

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 8.8e-36, Sum P(2) = 8.8e-36
 Identities = 133/499 (26%), Positives = 228/499 (45%)

Query:   157 PDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCS 215
             P+ +   + +L++LNL+ N IS+ +   FGN+  L+ L L  N  +GQ      NL+  +
Sbjct:   175 PNNSLFELHSLRYLNLAFNNISSSLPSKFGNLNKLEVLSLSFNGFSGQCFPTISNLTRIT 234

Query:   216 KNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEK-FRKPSPLVILNLDGN 274
             +     L L  N+LTGS P +   + L  L L DN   G+ P   F  PS L  L+L  N
Sbjct:   235 Q-----LYLHNNELTGSFPLVQNLTKLSFLGLSDNLFSGTIPSYLFTFPS-LSTLDLREN 288

Query:   275 QLWGSL--PDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHV 332
              L GS+  P+ S    L  + +  + L G + E + +L  L+ LDL   +    I  + +
Sbjct:   289 DLSGSIEVPNSSTSSKLEIMYLGFNHLEGKILEPISKLINLKRLDLSFLNTSYPIDLNLL 348

Query:   333 SNLSKLKYMDXXXXXXX-XXXXXGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDI 391
             S L  L Y+D                 P  +ESI L  C +   FP  L+  +N   +DI
Sbjct:   349 SPLKSLSYLDFSGNSLSPASLSSSSYIPLSMESIVLSLCGIR-EFPNILKHLQNLIHIDI 407

Query:   392 SDTEISDAVPSWFWDX--XXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDFEGPV 449
             +  +I   +P W W                  +G+  ++ +N +    + L +N+FEG +
Sbjct:   408 TSNQIKGKIPEWLWTLPQLSFVDISNNSFNGFQGSA-EVFVNLS-VRILMLDANNFEGAL 465

Query:   450 PPVPGNVTSLNLSNNKFSGPIS-SLCSISGEYFSYLDVSDNLLSGELPDCL-------LR 501
             P +P ++   +  +N F+G I  S+C+ +    + +D+S N  +G +P CL       LR
Sbjct:   466 PTLPLSIIGFSAIHNSFTGEIPLSICNRTS--LTMVDLSYNNFTGPIPQCLSNFMFVNLR 523

Query:   502 WQXXXXXXXXXXXFSGNFLTFFVG------EIPPSLKKCNELKIIDAGDNKFSGTIPAWI 555
                             +  +  VG      ++P SL  C+ L+ +   +N+   T P W+
Sbjct:   524 KNDLEGSIPDTFYTDSSLKSLDVGYNRLTGKLPRSLLNCSSLRFLSVDNNRVKDTFPFWL 583

Query:   556 GDTLPKLAILSLRSNQFHGSI-PRNLCRLS--KIQLLDFSLNSISGAIPKCIN-NLTAMV 611
                LP L +L+LRSN+F+G I P +   L   ++++ + + N  +G++P     N  A  
Sbjct:   584 -KALPNLRVLTLRSNKFYGPISPPHQGPLGFPELRIFEIADNMFTGSLPPSFFVNWKASA 642

Query:   612 EKASSNSTITHIYVYYRSA 630
                + +  +  +Y Y ++A
Sbjct:   643 LTKNEDGGLYMVYEYDKAA 661

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.8e-35, P = 1.8e-35
 Identities = 138/466 (29%), Positives = 206/466 (44%)

Query:   154 GPIPDYAFSNMTALQHLNLS-LNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLS 212
             G +PD +  N+ +L+ LNL   N    I  S G++  L  L +  N  T + P+   +L+
Sbjct:   216 GELPD-SMGNLKSLRVLNLHRCNFFGKIPTSLGSLSNLTDLDISKNEFTSEGPDSMSSLN 274

Query:   213 GCSKNSLEILKLGG--------NKLTGSLPDITEFSSLQELHLFD---NKLDGSFPEK-F 260
               +   L +L L          N+    LP  +  SSL +L  FD   N   G+ P   F
Sbjct:   275 RLTDFQLMLLNLSSLTNVDLSSNQFKAMLP--SNMSSLSKLEAFDISGNSFSGTIPSSLF 332

Query:   261 RKPSPLVILNLDGNQLWGSLP--DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDL 318
               PS L+ L+L  N   G L   ++S    L  L + ++ +NG +   + +L  L  L L
Sbjct:   333 MLPS-LIKLDLGTNDFSGPLKIGNISSPSNLQELYIGENNINGPIPRSILKLVGLSALSL 391

Query:   319 FGNSLEGMITESHVSNLSKLKYMDXXXXXXXXXXXXGWLPPFQLESIGLLHCKLGPHFPK 378
                   G++  S    L  L+ +D              LP   +  I L  C +   FPK
Sbjct:   392 SFWDTGGIVDFSIFLQLKSLRSLDLSGINLNISSSHH-LPSHMMHLI-LSSCNIS-QFPK 448

Query:   379 WLQSQKNYYFLDISDTEISDAVPSWFWDX-XXXXXXXXXXXXXXEGTVLDLSLNYAGYPG 437
             +L++Q + Y LDIS  +I   VP W W                 E T+L   +    Y  
Sbjct:   449 FLENQTSLYHLDISANQIEGQVPEWLWRLPTLRYVNIAQNAFSGELTMLPNPI----YSF 504

Query:   438 IDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD 497
             I  S N F G +P     + +L LSNN FSG I     IS +  S L + +N LSG +P+
Sbjct:   505 I-ASDNKFSGEIPRAVCEIGTLVLSNNNFSGSIPPCFEISNKTLSILHLRNNSLSGVIPE 563

Query:   498 CLLRWQXXXXXXXXXXXFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD 557
               L                 N L+   G+ P SL  C+ L+ ++  +N+ + T P+W+  
Sbjct:   564 ESLH------GYLRSLDVGSNRLS---GQFPKSLINCSYLQFLNVEENRINDTFPSWL-K 613

Query:   558 TLPKLAILSLRSNQFHGSI--PRNLCRLSKIQLLDFSLNSISGAIP 601
             +LP L +L LRSN+FHG I  P +    SK++  D S N  SG +P
Sbjct:   614 SLPNLQLLVLRSNEFHGPIFSPGDSLSFSKLRFFDISENRFSGVLP 659

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 2.2e-35, P = 2.2e-35
 Identities = 133/463 (28%), Positives = 217/463 (46%)

Query:   166 ALQHLNLS-LNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKL 224
             +LQ L +S  N    + +S G+  GLK L L  N L G +P    +LS     +LE L L
Sbjct:   106 SLQKLTISGANLTGTLPESLGDCLGLKVLDLSSNGLVGDIP---WSLS--KLRNLETLIL 160

Query:   225 GGNKLTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGN-QLWGSLP- 281
               N+LTG +P DI++ S L+ L LFDN L GS P +  K S L ++ + GN ++ G +P 
Sbjct:   161 NSNQLTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPS 220

Query:   282 DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLK-- 339
             ++     LT L ++++ ++G +   LG+L KLE L ++   + G I  S + N S+L   
Sbjct:   221 EIGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIP-SDLGNCSELVDL 279

Query:   340 YMDXXXXXXXXXXXXGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDA 399
             ++             G L   +LE + L    L    P+ + +  N   +D+S   +S +
Sbjct:   280 FLYENSLSGSIPREIGQLT--KLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGS 337

Query:   400 VPSWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL 459
             +PS                    G++     N +    + L  N   G +P   G +T L
Sbjct:   338 IPSSI-GRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKL 396

Query:   460 NLS---NNKFSGPIS-SLCSISGEYFSYLDVSDNLLSGELPDCLLRWQXXXXXXXXXXXF 515
              L    +N+  G I   L   +      LD+S N L+G +P  L   +            
Sbjct:   397 TLFFAWSNQLEGSIPPGLADCTD--LQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSL 454

Query:   516 SGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS 575
             SG     F   IP  +  C+ L  +  G N+ +G IP+ IG +L K+  L   SN+ HG 
Sbjct:   455 SG-----F---IPQEIGNCSSLVRLRLGFNRITGEIPSGIG-SLKKINFLDFSSNRLHGK 505

Query:   576 IPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAM-VEKASSN 617
             +P  +   S++Q++D S NS+ G++P  +++L+ + V   S+N
Sbjct:   506 VPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSAN 548

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2825389 RLP11 "AT1G71390" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 1.4e-34, Sum P(2) = 1.4e-34
 Identities = 129/457 (28%), Positives = 197/457 (43%)

Query:   154 GPIPDYAFSNMTALQHLNLSLNQ-ISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLS 212
             G IP  +  N++ L++L LS N+ +  I  S GN+  L+ L L DN+L G++P    NLS
Sbjct:   116 GEIPS-SLGNLSRLENLELSSNRLVGEIPYSIGNLKQLRNLSLGDNDLIGEIPSSLGNLS 174

Query:   213 GCSKNSLEILKLGGNKLTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNL 271
                   L  L L  N L G +P  I   + L+ + L  N L GS P  F   + L    +
Sbjct:   175 -----LLLDLDLWNNSLVGEVPASIGNLNELRVMSLDRNSLSGSIPISFTNLTKLSEFRI 229

Query:   272 DGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITES 330
               N  + SLP DLS F  L   D+S +  +G   + L  +  L ++ +  N   G I  +
Sbjct:   230 FFNN-FTSLPSDLSGFHNLVTFDISANSFSGHFPKFLFSIPSLAWVSMDRNQFSGPIEFA 288

Query:   331 HVSNLSKLKYMDXXXXXXXXXXXXGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLD 390
             ++S+ SKL+ +                    L  + + H  +    P+ +    +     
Sbjct:   289 NISSSSKLQNLILTRNKLDGSIPESISKFLNLVLLDVAHNNISGPVPRSMSKLVSLRIFG 348

Query:   391 ISDTEISDAVPSWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDFEGPVP 450
              S+ ++   VPSW W                +    +  +       +DLS N F G  P
Sbjct:   349 FSNNKLEGEVPSWLWRLSSTMLSHNSFSSFEKIYSKETMIQV-----LDLSFNSFRGTFP 403

Query:   451 ----PVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQXXX 506
                  + G +  L+LSNN F+G I  LC +     + L + +N  SG LPD         
Sbjct:   404 VWICKLKG-LHFLDLSNNLFNGSIP-LC-LRNFNLTGLILGNNKFSGTLPDIFAN----- 455

Query:   507 XXXXXXXXFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILS 566
                      SGN L    G+ P SL  C  L  ++   NK   T P+W+G +LP L +L 
Sbjct:   456 NTNLQSLDVSGNQLE---GKFPKSLINCKGLHFVNVESNKIKDTFPSWLG-SLPSLQVLI 511

Query:   567 LRSNQFHGSI--PRNLCRLSKIQLLDFSLNSISGAIP 601
             LRSN F+G +  P        ++++D S N  SG +P
Sbjct:   512 LRSNDFYGPLYHPSMSIGFQGLRIIDISHNGFSGVLP 548

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 5.9e-34, P = 5.9e-34
 Identities = 132/475 (27%), Positives = 218/475 (45%)

Query:   154 GPIPDYAFSNMTA-LQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNL 211
             GPIP    SN+++ L+ L+L  N +S  I    G++  LK+L L DN L G +PE F NL
Sbjct:   109 GPIPT-TLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNL 167

Query:   212 SGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILN 270
                   +L++L L   +LTG +P        LQ L L DN+L+G  P +    + L +  
Sbjct:   168 V-----NLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFA 222

Query:   271 LDGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITE 329
                N+L GSLP +L+    L  L++ D+  +G +   LG L  +++L+L GN L+G+I +
Sbjct:   223 AAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPK 282

Query:   330 SHVSNLSKLKYMDXXXXXXXXXXXXGWLPPFQLESIGLLHCKLGPHFPKWLQSQK-NYYF 388
               ++ L+ L+ +D             +    QLE + L   +L    PK + S   +   
Sbjct:   283 -RLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQ 341

Query:   389 LDISDTEISDAVPSWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDFEGP 448
             L +S+T++S  +P+   +                G + D          + L++N  EG 
Sbjct:   342 LFLSETQLSGEIPAEISNCQSLKLLDLSNNTLT-GQIPDSLFQLVELTNLYLNNNSLEGT 400

Query:   449 VPPVPGNVTSLN---LSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELP----DCL-- 499
             +     N+T+L    L +N   G +       G+    + + +N  SGE+P    +C   
Sbjct:   401 LSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGK-LEIMYLYENRFSGEMPVEIGNCTRL 459

Query:   500 --LRWQXXXXXXXXXXXFSG-NFLTFF-------VGEIPPSLKKCNELKIIDAGDNKFSG 549
               + W                  LT         VG IP SL  C+++ +ID  DN+ SG
Sbjct:   460 QEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSG 519

Query:   550 TIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAI-PKC 603
             +IP+  G  L  L +  + +N   G++P +L  L  +  ++FS N  +G+I P C
Sbjct:   520 SIPSSFG-FLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLC 573

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 7.8e-34, P = 7.8e-34
 Identities = 134/478 (28%), Positives = 217/478 (45%)

Query:   154 GPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLS 212
             GPIP  A SN+T+L+ L L  NQ++  I    G++  +++L + DN L G +PE   NL 
Sbjct:   109 GPIPT-ALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLV 167

Query:   213 GCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNL 271
                  +L++L L   +LTG +P  +     +Q L L DN L+G  P +    S L +   
Sbjct:   168 -----NLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTA 222

Query:   272 DGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITES 330
               N L G++P +L     L  L+++++ L G +   LG +S+L++L L  N L+G+I +S
Sbjct:   223 AENMLNGTIPAELGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKS 282

Query:   331 HVSNLSKLKYMDXXXXXXXXXXXXGWLPPFQLESIGLLHCKLGPHFPKWLQSQK-NYYFL 389
              +++L  L+ +D             +    QL  + L +  L    PK + S   N   L
Sbjct:   283 -LADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQL 341

Query:   390 DISDTEISDAVPSWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDFEGPV 449
              +S T++S  +P                     G++ +          + L +N  EG +
Sbjct:   342 VLSGTQLSGEIPVEL-SKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTL 400

Query:   450 PPVPGNVTSLN---LSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQXXX 506
              P   N+T+L    L +N   G +    S   +    L + +N  SGE+P      +   
Sbjct:   401 SPSISNLTNLQWLVLYHNNLEGKLPKEISALRK-LEVLFLYENRFSGEIPQ-----EIGN 454

Query:   507 XXXXXXXXFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILS 566
                       GN    F GEIPPS+ +  EL ++    N+  G +PA +G+   +L IL 
Sbjct:   455 CTSLKMIDMFGNH---FEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNC-HQLNILD 510

Query:   567 LRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCI---NNLTAM-VEKASSNSTI 620
             L  NQ  GSIP +   L  ++ L    NS+ G +P  +    NLT + +     N TI
Sbjct:   511 LADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI 568

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_742000001 hypothetical protein (1036 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	637
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-49
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-38
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  186 bits (473), Expect = 1e-49
 Identities = 167/535 (31%), Positives = 260/535 (48%), Gaps = 47/535 (8%)

Query: 112 NSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLN 171
           N+S+ +  +DLS   +S      +F++   +  ++L++NQL+GPIPD  F+  ++L++LN
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPY-IQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124

Query: 172 LSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG 231
           LS N  +  S   G++  L+TL L +N L+G++P    + S     SL++L LGGN L G
Sbjct: 125 LSNNNFTG-SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS-----SLKVLDLGGNVLVG 178

Query: 232 SLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP-DLSVFPFL 289
            +P  +T  +SL+ L L  N+L G  P +  +   L  + L  N L G +P ++     L
Sbjct: 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL 238

Query: 290 TRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA 349
             LD+  + L G +   LG L  L++L L+ N L G I  S + +L KL  +D S NSL+
Sbjct: 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLS 297

Query: 350 LNFSFGWLPPF--QLESIGLLHC---KLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWF 404
                G +P    QL+++ +LH          P  L S      L +   + S  +P   
Sbjct: 298 -----GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK-- 350

Query: 405 WDLSP--NLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLN-- 460
            +L    NL  L+LS N+L G + +   +      + L SN  EG +P   G   SL   
Sbjct: 351 -NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409

Query: 461 -LSNNKFSGPISS-LCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGN 518
            L +N FSG + S    +   YF  LD+S+N L G +        +L +L+LA N F G 
Sbjct: 410 RLQDNSFSGELPSEFTKLPLVYF--LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467

Query: 519 FLTF---------------FVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLA 563
                              F G +P  L   +EL  +   +NK SG IP  +  +  KL 
Sbjct: 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL-SSCKKLV 526

Query: 564 ILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNS 618
            L L  NQ  G IP +   +  +  LD S N +SG IPK + N+ ++V+   S++
Sbjct: 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  152 bits (386), Expect = 1e-38
 Identities = 161/545 (29%), Positives = 240/545 (44%), Gaps = 103/545 (18%)

Query: 92  DLYLASSTLLSINRPSLSSMNSSTS--------LTLLDLSSCGLSNSAYHWLFKISSNLL 143
           D++  SS+L  +N   LS+ N + S        L  LDLS+  LS    + +    S+L 
Sbjct: 112 DIFTTSSSLRYLN---LSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDI-GSFSSLK 167

Query: 144 ALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA------------------------ 179
            LDL  N L G IP+   +N+T+L+ L L+ NQ+                          
Sbjct: 168 VLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226

Query: 180 -ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DIT 237
            I    G +  L  L L  NNLTG +P    NL      +L+ L L  NKL+G +P  I 
Sbjct: 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK-----NLQYLFLYQNKLSGPIPPSIF 281

Query: 238 EFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSD 296
               L  L L DN L G  PE   +   L IL+L  N   G +P  L+  P L  L +  
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGW 356
           ++ +G + + LG+ + L  LDL  N+L G I E   S+ +  K + FS NSL        
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS-NSLE------- 393

Query: 357 LPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNL 416
                               PK L + ++   + + D   S  +PS F  L P +Y+L++
Sbjct: 394 -----------------GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDI 435

Query: 417 SHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSI 476
           S+N+L+G                ++S  ++ P      ++  L+L+ NKF G +    S 
Sbjct: 436 SNNNLQG---------------RINSRKWDMP------SLQMLSLARNKFFGGLPD--SF 472

Query: 477 SGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNE 536
             +    LD+S N  SG +P  L     L  L L+ N  SG        EIP  L  C +
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG--------EIPDELSSCKK 524

Query: 537 LKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSI 596
           L  +D   N+ SG IPA   + +P L+ L L  NQ  G IP+NL  +  +  ++ S N +
Sbjct: 525 LVSLDLSHNQLSGQIPASFSE-MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Query: 597 SGAIP 601
            G++P
Sbjct: 584 HGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  143 bits (363), Expect = 1e-35
 Identities = 143/440 (32%), Positives = 209/440 (47%), Gaps = 40/440 (9%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
           ++T+L SL  L LAS+ L+      L  M S   L  + L    LS    + +  ++S L
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELGQMKS---LKWIYLGYNNLSGEIPYEIGGLTS-L 238

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNNLT 201
             LDL  N L GPIP  +  N+  LQ+L L  N++S  I  S  ++  L +L L DN+L+
Sbjct: 239 NHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297

Query: 202 GQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKF 260
           G++PEL + L      +LEIL L  N  TG +P  +T    LQ L L+ NK  G  P+  
Sbjct: 298 GEIPELVIQL-----QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352

Query: 261 RKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLF 319
            K + L +L+L  N L G +P+ L     L +L +  + L G + + LG    L  + L 
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412

Query: 320 GNSLEGMITESHVSNLSKLKYMDFSFNSLALNF-SFGWLPPFQLESIGLLHCKLGPHFPK 378
            NS  G +  S  + L  + ++D S N+L     S  W  P  L+ + L   K     P 
Sbjct: 413 DNSFSGELP-SEFTKLPLVYFLDISNNNLQGRINSRKWDMP-SLQMLSLARNKFFGGLPD 470

Query: 379 WLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGI 438
              S K    LD+S  + S AVP     L   L  L LS N L G + D           
Sbjct: 471 SFGS-KRLENLDLSRNQFSGAVPRKLGSL-SELMQLKLSENKLSGEIPD----------- 517

Query: 439 DLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDC 498
           +LSS             + SL+LS+N+ SG I +  S      S LD+S N LSGE+P  
Sbjct: 518 ELSSCK----------KLVSLDLSHNQLSGQIPASFS-EMPVLSQLDLSQNQLSGEIPKN 566

Query: 499 LLRWQALAVLNLANNNFSGN 518
           L   ++L  +N+++N+  G+
Sbjct: 567 LGNVESLVQVNISHNHLHGS 586

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 75.3 bits (185), Expect = 5e-14
 Identities = 57/169 (33%), Positives = 84/169 (49%), Gaps = 10/169 (5%)

Query: 120 LDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQIS- 178
           LD+S+  L        + + S L  L L  N+  G +PD        L++L+LS NQ S 
Sbjct: 433 LDISNNNLQGRINSRKWDMPS-LQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSG 489

Query: 179 AISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-IT 237
           A+ +  G++  L  L L +N L+G++P+    LS C K  L  L L  N+L+G +P   +
Sbjct: 490 AVPRKLGSLSELMQLKLSENKLSGEIPD---ELSSCKK--LVSLDLSHNQLSGQIPASFS 544

Query: 238 EFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF 286
           E   L +L L  N+L G  P+       LV +N+  N L GSLP    F
Sbjct: 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 13/112 (11%)

Query: 124 SCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQI-SAISK 182
            C   ++   W          L L++  L G IP+   S +  LQ +NLS N I   I  
Sbjct: 408 DCQFDSTKGKWFID------GLGLDNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPP 460

Query: 183 SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP 234
           S G++  L+ L L  N+  G +PE    L+     SL IL L GN L+G +P
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLT-----SLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 7e-08
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 1/77 (1%)

Query: 525 GEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLS 584
           G IP  + K   L+ I+   N   G IP  +G ++  L +L L  N F+GSIP +L +L+
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 585 KIQLLDFSLNSISGAIP 601
            +++L+ + NS+SG +P
Sbjct: 491 SLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 249 DNK-LDGSFPEKFRKPSPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEG 306
           DN+ L G  P    K   L  +NL GN + G++P  L     L  LD+S +  NG++ E 
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 307 LGRLSKLEFLDLFGNSLEG 325
           LG+L+ L  L+L GNSL G
Sbjct: 486 LGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 6e-06
 Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 269 LNLDGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMI 327
           L LD   L G +P D+S    L  +++S + + G +   LG ++ LE LDL  NS  G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 328 TESHVSNLSKLKYMDFSFNSLA 349
            ES +  L+ L+ ++ + NSL+
Sbjct: 483 PES-LGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 11/116 (9%)

Query: 456 VTSLNLSNNKFSGPISSLCSISG-EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNN 514
           +  L L N    G I +   IS   +   +++S N + G +P  L    +L VL+L+ N+
Sbjct: 420 IDGLGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 515 FSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSN 570
           F+G+        IP SL +   L+I++   N  SG +PA +G  L   A  +   N
Sbjct: 478 FNGS--------IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 222 LKLGGNKLTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL 280
           L L    L G +P DI++   LQ ++L  N + G+ P      + L +L+L  N   GS+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 281 PD-LSVFPFLTRLDVSDSRLNGTVSEGLG 308
           P+ L     L  L+++ + L+G V   LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 2/61 (3%)

Query: 141 NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNN 199
           NL +LDL++N+L   IPD AF  +  L+ L+LS N +++IS ++F  +  L++L L  NN
Sbjct: 1   NLKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 200 L 200
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 66/319 (20%), Positives = 93/319 (29%), Gaps = 97/319 (30%)

Query: 166 ALQHLNLSLNQISAISKS-------FGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNS 218
           +L+ L LSLN+   I +            CGL+ L L DN L                  
Sbjct: 52  SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC------------- 98

Query: 219 LEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWG 278
                       G L  +   SSLQEL L +N L      +                L  
Sbjct: 99  ------------GVLESLLRSSSLQELKLNNNGLGDR-GLRL---------------LAK 130

Query: 279 SLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRL----SKLEFLDLFGNSLEGMITES---- 330
            L DL   P L +L +  +RL G   E L +       L+ L+L  N +      +    
Sbjct: 131 GLKDLP--PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188

Query: 331 --HVSNLSKLKYMDFSFNSL-ALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYY 387
                NL  L   +       A   +        LE + L    L               
Sbjct: 189 LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT-------------- 234

Query: 388 FLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG----------------TVLDLSLN 431
             D     ++ A+ S     + +L  L+LS N +                    LDL  N
Sbjct: 235 --DAGAAALASALLS----PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288

Query: 432 YAGYPGIDLSSNDFEGPVP 450
             G  G  L +     P  
Sbjct: 289 KFGEEGAQLLAESLLEPGN 307

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 555 IGDTLPKLAIL---SLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAM 610
           I + + KL  L   +L  N   G+IP +L  ++ +++LD S NS +G+IP+ +  LT++
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 58/218 (26%), Positives = 86/218 (39%), Gaps = 31/218 (14%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFK----ISS 140
           T    L++L L+ + L       L S+  S+SL  L L++ GL +     L K    +  
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 141 NLLALDLNSNQL-AGPIPDYA--FSNMTALQHLNLSLNQIS-----AISKSFGNMCGLKT 192
            L  L L  N+L        A        L+ LNL+ N I      A+++     C L+ 
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 193 LHLFDNNLT----GQLPELFLNLSGCSKNSLEILKLGGNKLTG------SLPDITEFSSL 242
           L L +N LT      L E        S  SLE+L LG N LT       +   ++   SL
Sbjct: 198 LDLNNNGLTDEGASALAETLA-----SLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252

Query: 243 QELHLFDNKLDGSFPEKFRKPSP----LVILNLDGNQL 276
             L L  N +     +   +       L+ L+L GN+ 
Sbjct: 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 5e-04
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 6/66 (9%)

Query: 438 IDLSSNDFEGPVPPVPGNVTS---LNLSNNKFSGPI-SSLCSISGEYFSYLDVSDNLLSG 493
           I+LS N   G +PP  G++TS   L+LS N F+G I  SL  ++      L+++ N LSG
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS--LRILNLNGNSLSG 504

Query: 494 ELPDCL 499
            +P  L
Sbjct: 505 RVPAAL 510

Length = 623

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 47/186 (25%)

Query: 165 TALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKL 224
           +ALQ L+L  N+IS + ++      L+ L ++DN++   LP                   
Sbjct: 262 SALQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRT-LPA------------------ 300

Query: 225 GGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLS 284
                   LP     S +  L++  N L  + PE    P  L  L    N L  SLP  S
Sbjct: 301 -------HLP-----SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENAL-TSLPA-S 343

Query: 285 VFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNL-SKLKYMDF 343
           + P L  LDVS +++   + E L     +  LD+  N+L  +       NL + L+ M  
Sbjct: 344 LPPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL-----PENLPAALQIMQA 395

Query: 344 SFNSLA 349
           S N+L 
Sbjct: 396 SRNNLV 401

Length = 754

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 65/245 (26%), Positives = 99/245 (40%), Gaps = 38/245 (15%)

Query: 82  VTITSLASLRDLYLASSTLLSINRPSLSS----MNSSTSLTLLDLSSCGLSNSAYHWLFK 137
             IT +  L  L  ++   L ++   + S    + +  +L  LDLS   LS+     L  
Sbjct: 126 NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP--KLLS 183

Query: 138 ISSNLLALDLNSNQLAGPIPD----------------------YAFSNMTALQHLNLSLN 175
             SNL  LDL+ N+++  +P                        + SN+  L  L LS N
Sbjct: 184 NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242

Query: 176 QISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD 235
           ++  + +S GN+  L+TL    NN    +  L       S  +L  L L GN L+ +LP 
Sbjct: 243 KLEDLPESIGNLSNLETL-DLSNNQISSISSLG------SLTNLRELDLSGNSLSNALPL 295

Query: 236 ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVS 295
           I     L EL L  N L      + +  S L+  N+  N    S   LS+   L  L   
Sbjct: 296 IALLLLLLELLL--NLLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTL 353

Query: 296 DSRLN 300
           D+ L+
Sbjct: 354 DNALD 358

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 167 LQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLG 225
           L+ L+LS N+++ I   +F  +  LK L L  NNLT   PE F  L      SL  L L 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLP-----SLRSLDLS 56

Query: 226 GNKL 229
           GN L
Sbjct: 57  GNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	637
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.37
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.34
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.31
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.21
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.06
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.98
PLN03150	623	hypothetical protein; Provisional	98.93
PLN03150	623	hypothetical protein; Provisional	98.91
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.9
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.88
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.77
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.73
KOG4341	483	consensus F-box protein containing LRR [General fu	98.69
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.64
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.53
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.53
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.51
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.43
KOG4341	483	consensus F-box protein containing LRR [General fu	98.31
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.27
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.23
PRK15386	426	type III secretion protein GogB; Provisional	98.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.07
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.01
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.95
PRK15386	426	type III secretion protein GogB; Provisional	97.81
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.37
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.26
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.25
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.16
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.12
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.03
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.01
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.92
KOG4308	478	consensus LRR-containing protein [Function unknown	96.25
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.93
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.6
KOG4308	478	consensus LRR-containing protein [Function unknown	95.33
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.68
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.92
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.55
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.17
smart00370	26	LRR Leucine-rich repeats, outliers.	91.5
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.5
smart00370	26	LRR Leucine-rich repeats, outliers.	91.07
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.07
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.01
KOG0473	326	consensus Leucine-rich repeat protein [Function un	90.84
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.43
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.83
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	86.13
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	85.33
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	82.31
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	80.76

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-54  Score=499.95  Aligned_cols=548  Identities=28%  Similarity=0.397  Sum_probs=453.6

Q ss_pred             HHHHHhhccccceeeeeeccccccccccCchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCc
Q 042944           26 QAELAMCRRKQVELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINR  105 (637)
Q Consensus        26 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  105 (637)
                      ....++|.|.++.|+...  .             ++.++++++......      ...+..+++|+.|++++|.+.+..+
T Consensus        52 ~~~~~~c~w~gv~c~~~~--~-------------v~~L~L~~~~i~~~~------~~~~~~l~~L~~L~Ls~n~~~~~ip  110 (968)
T PLN00113         52 NSSADVCLWQGITCNNSS--R-------------VVSIDLSGKNISGKI------SSAIFRLPYIQTINLSNNQLSGPIP  110 (968)
T ss_pred             CCCCCCCcCcceecCCCC--c-------------EEEEEecCCCccccC------ChHHhCCCCCCEEECCCCccCCcCC
Confidence            334568999998886211  1             124566665543322      2347789999999999998875433


Q ss_pred             ccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccc-hhhhc
Q 042944          106 PSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA-ISKSF  184 (637)
Q Consensus       106 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~-l~~~~  184 (637)
                        ...+..+++|++|++++|.+.+..|.  ..+ ++|++|++++|.+.+.+|. .++++++|++|++++|.+.. +|..+
T Consensus       111 --~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l-~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~n~l~~~~p~~~  184 (968)
T PLN00113        111 --DDIFTTSSSLRYLNLSNNNFTGSIPR--GSI-PNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGGNVLVGKIPNSL  184 (968)
T ss_pred             --hHHhccCCCCCEEECcCCccccccCc--ccc-CCCCEEECcCCcccccCCh-HHhcCCCCCEEECccCcccccCChhh
Confidence              12244779999999999998866654  233 8899999999999867776 78899999999999998875 78889


Q ss_pred             CCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC-cCCcccCCCccEEEccCCcCCCCCCCcCCCC
Q 042944          185 GNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS-LPDITEFSSLQELHLFDNKLDGSFPEKFRKP  263 (637)
Q Consensus       185 ~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l  263 (637)
                      .++++|++|++++|.+.+..|..+..+.     +|+.|++++|.+... +..+..+++|++|++++|.+.+..|..+.++
T Consensus       185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  259 (968)
T PLN00113        185 TNLTSLEFLTLASNQLVGQIPRELGQMK-----SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL  259 (968)
T ss_pred             hhCcCCCeeeccCCCCcCcCChHHcCcC-----CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence            9999999999999999888899999888     999999999988754 4457888999999999999988888889999


Q ss_pred             CCCcEEEcCCCCCCCCCC-CCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEE
Q 042944          264 SPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMD  342 (637)
Q Consensus       264 ~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  342 (637)
                      ++|+.|++++|.+.+..+ .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+..+++|+.|+
T Consensus       260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~  338 (968)
T PLN00113        260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQ  338 (968)
T ss_pred             CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCEEE
Confidence            999999999998876554 355589999999999999888888889999999999999998876554 678899999999


Q ss_pred             ccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCC
Q 042944          343 FSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLE  422 (637)
Q Consensus       343 l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~  422 (637)
                      +++|.+....+..+..+.+|+.|++++|.+.+..|.++..+++|+.|++++|.+.+..+..+... ++|++|++++|.++
T Consensus       339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~-~~L~~L~L~~n~l~  417 (968)
T PLN00113        339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC-RSLRRVRLQDNSFS  417 (968)
T ss_pred             CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC-CCCCEEECcCCEee
Confidence            99999987778788888999999999999988888888889999999999999988888777664 89999999999999


Q ss_pred             CcccccccCCCCCCeEeCCCCcCcCCCCC---CCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhh
Q 042944          423 GTVLDLSLNYAGYPGIDLSSNDFEGPVPP---VPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCL  499 (637)
Q Consensus       423 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  499 (637)
                      +..+..+..++.|+.+++++|.+.+..+.   .+++|++|++++|++.+..+.....  ++|+.|++++|.+++..|..+
T Consensus       418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--~~L~~L~ls~n~l~~~~~~~~  495 (968)
T PLN00113        418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS--KRLENLDLSRNQFSGAVPRKL  495 (968)
T ss_pred             eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc--ccceEEECcCCccCCccChhh
Confidence            88888889999999999999999887665   3778999999999988777765443  789999999999998888899


Q ss_pred             hccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCcc
Q 042944          500 LRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRN  579 (637)
Q Consensus       500 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~  579 (637)
                      ..+++|+.|++++|.+.        +.+|..+.++++|++|++++|.+++.+|..+. .+++|+.|+|++|++++.+|..
T Consensus       496 ~~l~~L~~L~Ls~N~l~--------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~  566 (968)
T PLN00113        496 GSLSELMQLKLSENKLS--------GEIPDELSSCKKLVSLDLSHNQLSGQIPASFS-EMPVLSQLDLSQNQLSGEIPKN  566 (968)
T ss_pred             hhhhccCEEECcCCcce--------eeCChHHcCccCCCEEECCCCcccccCChhHh-CcccCCEEECCCCcccccCChh
Confidence            99999999999999887        36777888899999999999999888888776 6899999999999999889999


Q ss_pred             ccCCCCCcEeeCCCCcccccccccccccccceeeccCCCe
Q 042944          580 LCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNST  619 (637)
Q Consensus       580 l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~  619 (637)
                      +..+++|+.|++++|++.+.+|.. +....+....+.||.
T Consensus       567 l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~  605 (968)
T PLN00113        567 LGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI  605 (968)
T ss_pred             HhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence            999999999999999999888854 334445555566665

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=7.9e-53  Score=484.86  Aligned_cols=512  Identities=30%  Similarity=0.416  Sum_probs=461.7

Q ss_pred             CCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCC
Q 042944           87 LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTA  166 (637)
Q Consensus        87 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~  166 (637)
                      ..+++.|+++++.+.+..+   ..+..+++|++|++++|.+.+..|..++..+++|++|++++|.+++.+|.   ..+++
T Consensus        68 ~~~v~~L~L~~~~i~~~~~---~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~  141 (968)
T PLN00113         68 SSRVVSIDLSGKNISGKIS---SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPN  141 (968)
T ss_pred             CCcEEEEEecCCCccccCC---hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCC
Confidence            4589999999999888764   56777899999999999998778877774459999999999999877775   56899


Q ss_pred             CCEEEcCCCcccc-hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC-cCCcccCCCccE
Q 042944          167 LQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS-LPDITEFSSLQE  244 (637)
Q Consensus       167 L~~L~L~~n~l~~-l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~L~~  244 (637)
                      |++|++++|.+.. +|..++++++|++|++++|.+.+..|..+.+++     +|++|++++|.+... +..+..+++|++
T Consensus       142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT-----SLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc-----CCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            9999999999985 788999999999999999999889999999999     999999999998764 446888999999


Q ss_pred             EEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcC
Q 042944          245 LHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL  323 (637)
Q Consensus       245 L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  323 (637)
                      |++++|.+.+..|..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            99999999988999999999999999999999765554 55599999999999999988888999999999999999999


Q ss_pred             CCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchh
Q 042944          324 EGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSW  403 (637)
Q Consensus       324 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~  403 (637)
                      .+..+. .+.++++|+.|++++|.+....+..+..+++|+.|++.+|.+.+..|.++..+++|+.|++++|.+.+..+.+
T Consensus       297 ~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        297 SGEIPE-LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             ccCCCh-hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            876655 6889999999999999999888888889999999999999999899999999999999999999999888888


Q ss_pred             hhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccccccccCCC
Q 042944          404 FWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISGEY  480 (637)
Q Consensus       404 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~  480 (637)
                      +... ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..   +++|+.|++++|++.+..+.... ..++
T Consensus       376 ~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~  453 (968)
T PLN00113        376 LCSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPS  453 (968)
T ss_pred             HhCc-CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCC
Confidence            7765 89999999999999999999999999999999999999877654   67899999999999987665433 2399


Q ss_pred             ccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCC
Q 042944          481 FSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLP  560 (637)
Q Consensus       481 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~  560 (637)
                      |+.|++++|.+.+..|..+ ..++|+.|++++|++++        .+|..+.++++|+.|++++|.+.+.+|..+. +++
T Consensus       454 L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~  523 (968)
T PLN00113        454 LQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSG--------AVPRKLGSLSELMQLKLSENKLSGEIPDELS-SCK  523 (968)
T ss_pred             CcEEECcCceeeeecCccc-ccccceEEECcCCccCC--------ccChhhhhhhccCEEECcCCcceeeCChHHc-Ccc
Confidence            9999999999998887765 46899999999999873        5677788999999999999999988998887 699


Q ss_pred             CCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944          561 KLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH  622 (637)
Q Consensus       561 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~  622 (637)
                      +|+.|+|++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+++++++|++..
T Consensus       524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            99999999999999999999999999999999999999999999999999999999999964

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=7.7e-41  Score=312.81  Aligned_cols=486  Identities=23%  Similarity=0.318  Sum_probs=351.0

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCC
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTAL  167 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L  167 (637)
                      ..+..+.++.|.+....    +.+.++..|++|++.+|++. ..|.++.++ ..++.|+.++|++. .+|. .+..+.+|
T Consensus        45 v~l~~lils~N~l~~l~----~dl~nL~~l~vl~~~~n~l~-~lp~aig~l-~~l~~l~vs~n~ls-~lp~-~i~s~~~l  116 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLR----EDLKNLACLTVLNVHDNKLS-QLPAAIGEL-EALKSLNVSHNKLS-ELPE-QIGSLISL  116 (565)
T ss_pred             cchhhhhhccCchhhcc----HhhhcccceeEEEeccchhh-hCCHHHHHH-HHHHHhhcccchHh-hccH-HHhhhhhh
Confidence            46788888988888774    66778889999999999887 456668888 88999999999998 8888 78889999


Q ss_pred             CEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEc
Q 042944          168 QHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHL  247 (637)
Q Consensus       168 ~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l  247 (637)
                      +.+++++|.+..+++.++.+..|+.++..+|++. ..|+.+..+.     ++..+++.+|.+...+++...++.|++|+.
T Consensus       117 ~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~-----~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~  190 (565)
T KOG0472|consen  117 VKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLS-----KLSKLDLEGNKLKALPENHIAMKRLKHLDC  190 (565)
T ss_pred             hhhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHHHHH-----HHHHhhccccchhhCCHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999998 7788888888     999999999999988888777889999999


Q ss_pred             cCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCcc
Q 042944          248 FDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMI  327 (637)
Q Consensus       248 ~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  327 (637)
                      ..|.++ ..|..++.+.+|+.|++.+|++. ..|.+.++..|++++++.|.+.....+...+++++..|++++|++... 
T Consensus       191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~-  267 (565)
T KOG0472|consen  191 NSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV-  267 (565)
T ss_pred             chhhhh-cCChhhcchhhhHHHHhhhcccc-cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC-
Confidence            999887 67888999999999999999997 555888899999999999998865556666899999999999999864 


Q ss_pred             chhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCC--CccEEEeeCCCCCCccchhhh
Q 042944          328 TESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQK--NYYFLDISDTEISDAVPSWFW  405 (637)
Q Consensus       328 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~i~~~~~~~~~  405 (637)
                      |. .+.-+.+|++||+++|.++. .+...+++ .|+.|.+.+|.+.+.-.+.+..-+  -|++|.=   .+.+.++..- 
T Consensus       268 Pd-e~clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dglS~s-  340 (565)
T KOG0472|consen  268 PD-EICLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDGLSQS-  340 (565)
T ss_pred             ch-HHHHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCCCCCC-
Confidence            33 46678889999999998872 23333333 444455554443221111111000  0111100   0000000000 


Q ss_pred             hcCCCccEEECCCCcCCC-----cccccccCCCCCCeEeCCCCcCcCCCCCCC-----CCccEEEcccccccCccccccc
Q 042944          406 DLSPNLYYLNLSHNHLEG-----TVLDLSLNYAGYPGIDLSSNDFEGPVPPVP-----GNVTSLNLSNNKFSGPISSLCS  475 (637)
Q Consensus       406 ~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~  475 (637)
                                 .+..-+.     .........-+.+.|++++-+++.+....+     .-++..++++|++...+.....
T Consensus       341 -----------e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~  409 (565)
T KOG0472|consen  341 -----------EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVE  409 (565)
T ss_pred             -----------cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHH
Confidence                       0000000     000011122344555555555543222221     1256677777777655444333


Q ss_pred             ccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhh
Q 042944          476 ISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWI  555 (637)
Q Consensus       476 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l  555 (637)
                      .. ...+.+.+++|.+. -+|..++.+++|..|++++|.+.         .+|..+..+..|+.|+++.|++. .+|..+
T Consensus       410 lk-elvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln---------~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~  477 (565)
T KOG0472|consen  410 LK-ELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN---------DLPEEMGSLVRLQTLNLSFNRFR-MLPECL  477 (565)
T ss_pred             HH-HHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh---------hcchhhhhhhhhheecccccccc-cchHHH
Confidence            21 33345666776665 67778888999999999999887         78888888888999999999987 888887


Q ss_pred             hhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944          556 GDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH  622 (637)
Q Consensus       556 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~  622 (637)
                      .+ +..++.+-.++|++....|.++..+.+|..||+.+|.+. .+|..++++++|++|.+.||+++.
T Consensus       478 y~-lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~  542 (565)
T KOG0472|consen  478 YE-LQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQ  542 (565)
T ss_pred             hh-HHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccCC
Confidence            74 667777777889988666666899999999999999988 888899999999999999998873

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-36  Score=296.01  Aligned_cols=359  Identities=23%  Similarity=0.290  Sum_probs=167.3

Q ss_pred             cEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcC
Q 042944          118 TLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF  196 (637)
Q Consensus       118 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~  196 (637)
                      +.|++++|++....+..|.++ ++|+.+++.+|.++ .||. ......+|+.|+|.+|.|.++ .+.+..++.|+.||++
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl-~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNL-PNLQEVNLNKNELT-RIPR-FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeccccccccCcHHHHhcC-Ccceeeeeccchhh-hccc-ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            345555555555444444444 55555555555555 5554 122233355555555555554 2344555555555555


Q ss_pred             CCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC-CcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCC
Q 042944          197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQ  275 (637)
Q Consensus       197 ~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~  275 (637)
                      .|.|+......|..-.     ++++|++++|.++..-. .+..+.+|..|.|+.|+++...+..|+.+++|+.|++..|+
T Consensus       158 rN~is~i~~~sfp~~~-----ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKV-----NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hchhhcccCCCCCCCC-----CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence            5555433223333322     45555555555543222 23344455555555555554444445555555555555555


Q ss_pred             CCCC-CCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccC
Q 042944          276 LWGS-LPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSF  354 (637)
Q Consensus       276 ~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  354 (637)
                      +... ...+.++++|+.|.+..|++......+|..+.++++|+++.|.+.. +...++.++++|+.|++++|.|......
T Consensus       233 irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~-vn~g~lfgLt~L~~L~lS~NaI~rih~d  311 (873)
T KOG4194|consen  233 IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA-VNEGWLFGLTSLEQLDLSYNAIQRIHID  311 (873)
T ss_pred             eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh-hhcccccccchhhhhccchhhhheeecc
Confidence            4322 2223334555555555555444444444455555555555554443 2233444445555555555544444444


Q ss_pred             CCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCC
Q 042944          355 GWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAG  434 (637)
Q Consensus       355 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~  434 (637)
                      .                        +..+++|+.|+|++|++....+..+..+ ..|++|++++|.+...-...|..+.+
T Consensus       312 ~------------------------WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lss  366 (873)
T KOG4194|consen  312 S------------------------WSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNSIDHLAEGAFVGLSS  366 (873)
T ss_pred             h------------------------hhhcccceeEeccccccccCChhHHHHH-HHhhhhcccccchHHHHhhHHHHhhh
Confidence            4                        4444444444444444444333333222 44444444444444333333444444


Q ss_pred             CCeEeCCCCcCcCC------CCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEE
Q 042944          435 YPGIDLSSNDFEGP------VPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVL  508 (637)
Q Consensus       435 L~~L~l~~n~~~~~------~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  508 (637)
                      |+.||+++|.+...      ....+++|+.|++.+|++... +.-.+.+.++|+.|+|.+|.+..+.+++|..+ .|++|
T Consensus       367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I-~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~L  444 (873)
T KOG4194|consen  367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI-PKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKEL  444 (873)
T ss_pred             hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec-chhhhccCcccceecCCCCcceeecccccccc-hhhhh
Confidence            44444444433211      111134455555555555422 22222233556666666666655556666655 56665


Q ss_pred             eccC
Q 042944          509 NLAN  512 (637)
Q Consensus       509 ~l~~  512 (637)
                      .+..
T Consensus       445 v~nS  448 (873)
T KOG4194|consen  445 VMNS  448 (873)
T ss_pred             hhcc
Confidence            5543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.1e-36  Score=292.50  Aligned_cols=388  Identities=20%  Similarity=0.222  Sum_probs=248.2

Q ss_pred             CCEEEcCCCcccchhh-hcCCC--CCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCC-Cc
Q 042944          167 LQHLNLSLNQISAISK-SFGNM--CGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFS-SL  242 (637)
Q Consensus       167 L~~L~L~~n~l~~l~~-~~~~l--~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-~L  242 (637)
                      -+.|+.+++.+..+.. .+.+.  +.-+.|++++|.+....+..|.+++     +|+.+++.+|.++. +|.++... ++
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~-----nLq~v~l~~N~Lt~-IP~f~~~sghl  127 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLP-----NLQEVNLNKNELTR-IPRFGHESGHL  127 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCC-----cceeeeeccchhhh-cccccccccce
Confidence            3455666666655421 22222  2344577777777777777777777     78888887777773 44444444 68


Q ss_pred             cEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCC-CCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCC
Q 042944          243 QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDL-SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGN  321 (637)
Q Consensus       243 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  321 (637)
                      +.|+|.+|.|+....+.++.++.|+.||++.|.+..+.... ..-.++++|+|++|.|++.....|..+.+|..|.++.|
T Consensus       128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN  207 (873)
T KOG4194|consen  128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN  207 (873)
T ss_pred             eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence            88888888887777777888888888888888887654443 33567888888888888777777888888888888888


Q ss_pred             cCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccc
Q 042944          322 SLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVP  401 (637)
Q Consensus       322 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~  401 (637)
                      +++. .|...|.++++|+.|++..|.|....-..|..+++|+.|.+..|.+...-...|..+.++++|+|+.|++.....
T Consensus       208 ritt-Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~  286 (873)
T KOG4194|consen  208 RITT-LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE  286 (873)
T ss_pred             cccc-cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc
Confidence            8876 455578888888888888888876666677777777777777777766555667777888888888888777666


Q ss_pred             hhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCc
Q 042944          402 SWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYF  481 (637)
Q Consensus       402 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L  481 (637)
                      .|++++ +.|++|++++|.|..+.++.+..+++|+.|+++.|+++...+..+..                      ...|
T Consensus       287 g~lfgL-t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~----------------------L~~L  343 (873)
T KOG4194|consen  287 GWLFGL-TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV----------------------LSQL  343 (873)
T ss_pred             cccccc-chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH----------------------HHHh
Confidence            777765 77888888888877777777777777777777777666544433110                      0333


Q ss_pred             cEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCC
Q 042944          482 SYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPK  561 (637)
Q Consensus       482 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~  561 (637)
                      ++|.|++|.+......+|..+.+|++|+|..|.++..+-+     -...+..+++|+.|++.+|+++ .||..-|..+++
T Consensus       344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED-----aa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~  417 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED-----AAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEA  417 (873)
T ss_pred             hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec-----chhhhccchhhhheeecCceee-ecchhhhccCcc
Confidence            4444444444433334455555555555555544321100     0112334555555555555554 455444444555


Q ss_pred             CcEEeccCccccccCCccccCCCCCcEeeC
Q 042944          562 LAILSLRSNQFHGSIPRNLCRLSKIQLLDF  591 (637)
Q Consensus       562 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l  591 (637)
                      |+.|||.+|.|....|..|..+ .|++|-+
T Consensus       418 LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~  446 (873)
T KOG4194|consen  418 LEHLDLGDNAIASIQPNAFEPM-ELKELVM  446 (873)
T ss_pred             cceecCCCCcceeecccccccc-hhhhhhh
Confidence            5555555555554445555554 4544443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.1e-38  Score=296.57  Aligned_cols=481  Identities=25%  Similarity=0.285  Sum_probs=367.9

Q ss_pred             HHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCC
Q 042944           62 MMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSN  141 (637)
Q Consensus        62 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~  141 (637)
                      .++++.|......+       .+.++..+.+|++.+|.+....    ++++.+..++.++.++|++. ..|..+... ..
T Consensus        49 ~lils~N~l~~l~~-------dl~nL~~l~vl~~~~n~l~~lp----~aig~l~~l~~l~vs~n~ls-~lp~~i~s~-~~  115 (565)
T KOG0472|consen   49 KLILSHNDLEVLRE-------DLKNLACLTVLNVHDNKLSQLP----AAIGELEALKSLNVSHNKLS-ELPEQIGSL-IS  115 (565)
T ss_pred             hhhhccCchhhccH-------hhhcccceeEEEeccchhhhCC----HHHHHHHHHHHhhcccchHh-hccHHHhhh-hh
Confidence            67788877655442       2678899999999999999884    78888899999999999987 677778888 99


Q ss_pred             CcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccE
Q 042944          142 LLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEI  221 (637)
Q Consensus       142 L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~  221 (637)
                      |+.|++++|.+. ++++ .++.+..|+.++..+|++.++|+++..+.+|..+++.+|.+....|..+. ++     .|++
T Consensus       116 l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~-----~L~~  187 (565)
T KOG0472|consen  116 LVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MK-----RLKH  187 (565)
T ss_pred             hhhhhcccccee-ecCc-hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HH-----HHHh
Confidence            999999999998 8888 78899999999999999999999999999999999999999955555544 88     9999


Q ss_pred             EEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCC-CCCCCCEEEccCCcCC
Q 042944          222 LKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLS-VFPFLTRLDVSDSRLN  300 (637)
Q Consensus       222 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~  300 (637)
                      |+...|-+...+++++.+.+|.-|++..|++. ..| .|.+|..|++++++.|++........ +++++..||+..|+++
T Consensus       188 ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  188 LDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             cccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc
Confidence            99999999999999999999999999999998 445 79999999999999999986666655 5999999999999999


Q ss_pred             CCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCC--ceeEEec--cCCcCCCCc
Q 042944          301 GTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPF--QLESIGL--LHCKLGPHF  376 (637)
Q Consensus       301 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l--~~~~~~~~~  376 (637)
                       ..|..+.-+++|+.|++++|.+++..+  .++++ +|+.|.+.+|++...........+  -|++|.=  .+-.+....
T Consensus       266 -e~Pde~clLrsL~rLDlSNN~is~Lp~--sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se  341 (565)
T KOG0472|consen  266 -EVPDEICLLRSLERLDLSNNDISSLPY--SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSE  341 (565)
T ss_pred             -cCchHHHHhhhhhhhcccCCccccCCc--ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence             667778889999999999999997543  58888 999999999998643332221111  1222111  000000000


Q ss_pred             cccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCC--CCCCeEeCCCCcCcCCCCCCCC
Q 042944          377 PKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNY--AGYPGIDLSSNDFEGPVPPVPG  454 (637)
Q Consensus       377 ~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~  454 (637)
                       +.-     -..-+    ......+.. . ...+.+.|++++-.++..+...|..-  .-.+.+++++|++.. .|..++
T Consensus       342 -~~~-----e~~~t----~~~~~~~~~-~-~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~  408 (565)
T KOG0472|consen  342 -GGT-----ETAMT----LPSESFPDI-Y-AIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLV  408 (565)
T ss_pred             -ccc-----cccCC----CCCCcccch-h-hhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh-hhhhhH
Confidence             000     00000    000001111 1 11355555665555554444333222  135566666666653 333322


Q ss_pred             ----CccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcc
Q 042944          455 ----NVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPS  530 (637)
Q Consensus       455 ----~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~  530 (637)
                          .++.+.+++|.+......++..  ++|..|++++|-+. .+|..++.+..|+.|+++.|+|.         .+|.+
T Consensus       409 ~lkelvT~l~lsnn~isfv~~~l~~l--~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr---------~lP~~  476 (565)
T KOG0472|consen  409 ELKELVTDLVLSNNKISFVPLELSQL--QKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR---------MLPEC  476 (565)
T ss_pred             HHHHHHHHHHhhcCccccchHHHHhh--hcceeeecccchhh-hcchhhhhhhhhheecccccccc---------cchHH
Confidence                2445677777776555544444  89999999999887 78899999999999999999988         89999


Q ss_pred             ccCCCCCcEEEcCCCcccccCChh-hhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944          531 LKKCNELKIIDAGDNKFSGTIPAW-IGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS  597 (637)
Q Consensus       531 l~~l~~L~~L~ls~n~l~~~~~~~-l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~  597 (637)
                      +..+..|+.+-.++|++. .++.. +. ++.+|.+|||.+|.+. .+|..++++++|++|++++|++.
T Consensus       477 ~y~lq~lEtllas~nqi~-~vd~~~l~-nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  477 LYELQTLETLLASNNQIG-SVDPSGLK-NMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HhhHHHHHHHHhcccccc-ccChHHhh-hhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            988889999999999997 66655 65 8999999999999998 89999999999999999999997

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-36  Score=310.34  Aligned_cols=460  Identities=26%  Similarity=0.333  Sum_probs=282.6

Q ss_pred             CcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCE
Q 042944           90 LRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQH  169 (637)
Q Consensus        90 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~  169 (637)
                      +..|+++.|.+-..+   .+...+.-+|++|++++|.+.+ .|..+..+ ++|+.|+++.|.|. ..|. ...++.+|++
T Consensus        23 ~~~ln~~~N~~l~~p---l~~~~~~v~L~~l~lsnn~~~~-fp~~it~l-~~L~~ln~s~n~i~-~vp~-s~~~~~~l~~   95 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRP---LEFVEKRVKLKSLDLSNNQISS-FPIQITLL-SHLRQLNLSRNYIR-SVPS-SCSNMRNLQY   95 (1081)
T ss_pred             HHhhhccccccccCc---hHHhhheeeeEEeecccccccc-CCchhhhH-HHHhhcccchhhHh-hCch-hhhhhhcchh
Confidence            444455444443322   1223333335555555554442 23334444 44555555555554 4443 4445555555


Q ss_pred             EEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccC
Q 042944          170 LNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFD  249 (637)
Q Consensus       170 L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  249 (637)
                      ++|.+|.+..+|..+..+.+|++|+++.|.+. ..|..+..+.     .++.+..++|.....   ++.. .++.+++..
T Consensus        96 lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt-----~~~~~~~s~N~~~~~---lg~~-~ik~~~l~~  165 (1081)
T KOG0618|consen   96 LNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLT-----AEEELAASNNEKIQR---LGQT-SIKKLDLRL  165 (1081)
T ss_pred             heeccchhhcCchhHHhhhcccccccchhccC-CCchhHHhhh-----HHHHHhhhcchhhhh---hccc-cchhhhhhh
Confidence            55555555555555555555555555555444 4444444444     444444444411111   1111 144444444


Q ss_pred             CcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccch
Q 042944          250 NKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITE  329 (637)
Q Consensus       250 n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  329 (637)
                      |.+.+..+.....++.  .                       |+++.|.+. .  ..+..+++|+.+....|.+...   
T Consensus       166 n~l~~~~~~~i~~l~~--~-----------------------ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l---  214 (1081)
T KOG0618|consen  166 NVLGGSFLIDIYNLTH--Q-----------------------LDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL---  214 (1081)
T ss_pred             hhcccchhcchhhhhe--e-----------------------eecccchhh-h--hhhhhccchhhhhhhhcccceE---
Confidence            4444333333333333  3                       555555443 1  1234445555555555544431   


Q ss_pred             hhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCC
Q 042944          330 SHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSP  409 (637)
Q Consensus       330 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~  409 (637)
                        -..-++++.|+.+.|.++  ....-....++++++++.+.+. .+|+|+..+.+|+.++...|.++. .+..+... .
T Consensus       215 --~~~g~~l~~L~a~~n~l~--~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~-lp~ri~~~-~  287 (1081)
T KOG0618|consen  215 --EISGPSLTALYADHNPLT--TLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA-LPLRISRI-T  287 (1081)
T ss_pred             --EecCcchheeeeccCcce--eeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHh-hHHHHhhh-h
Confidence              122345555555555554  1112223345666666666665 455889999999999999998854 44444443 6


Q ss_pred             CccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCC----CCccEEEcccccccCcccccccccCCCccEEe
Q 042944          410 NLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVP----GNVTSLNLSNNKFSGPISSLCSISGEYFSYLD  485 (637)
Q Consensus       410 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~----~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  485 (637)
                      +|+.|.+..|.+.- ++.......+|++|++..|.+....+..+    ..+..|+.+.|++...... .....+.|+.|+
T Consensus       288 ~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~-~e~~~~~Lq~Ly  365 (1081)
T KOG0618|consen  288 SLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY-EENNHAALQELY  365 (1081)
T ss_pred             hHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc-cchhhHHHHHHH
Confidence            88888888888863 44446678889999999998875544332    2467777788887654422 222228899999


Q ss_pred             CCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcc-ccCCCCCcEEEcCCCcccccCChhhhhcCCCCcE
Q 042944          486 VSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPS-LKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAI  564 (637)
Q Consensus       486 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~-l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~  564 (637)
                      +.+|.+++.....+.+.++|+.|+|++|++.         .+|++ +.+++.|++|++|+|.++ .+|..+. +++.|++
T Consensus       366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~---------~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva-~~~~L~t  434 (1081)
T KOG0618|consen  366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLN---------SFPASKLRKLEELEELNLSGNKLT-TLPDTVA-NLGRLHT  434 (1081)
T ss_pred             HhcCcccccchhhhccccceeeeeecccccc---------cCCHHHHhchHHhHHHhcccchhh-hhhHHHH-hhhhhHH
Confidence            9999999988889999999999999999988         66664 788999999999999998 8998888 7999999


Q ss_pred             EeccCccccccCCccccCCCCCcEeeCCCCcccc-cccccccccccceeeccCCCee
Q 042944          565 LSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG-AIPKCINNLTAMVEKASSNSTI  620 (637)
Q Consensus       565 L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~-~~p~~l~~l~~L~~l~l~~n~l  620 (637)
                      |....|++. ..| .+.+++.|+.+|+|.|.++. .+|....+ +.|++|+++||.-
T Consensus       435 L~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  435 LRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             HhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence            999999998 777 68899999999999999874 44444444 8999999999973

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-34  Score=296.53  Aligned_cols=488  Identities=22%  Similarity=0.252  Sum_probs=342.9

Q ss_pred             HHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHh
Q 042944           58 ILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFK  137 (637)
Q Consensus        58 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~  137 (637)
                      +.+..+++..|.+..-      .+.++...-+|+.|++++|.+.+.+    ..+..+++|+.|+++.|.|.. .|.....
T Consensus        21 ~~~~~ln~~~N~~l~~------pl~~~~~~v~L~~l~lsnn~~~~fp----~~it~l~~L~~ln~s~n~i~~-vp~s~~~   89 (1081)
T KOG0618|consen   21 EALQILNLRRNSLLSR------PLEFVEKRVKLKSLDLSNNQISSFP----IQITLLSHLRQLNLSRNYIRS-VPSSCSN   89 (1081)
T ss_pred             HHHHhhhccccccccC------chHHhhheeeeEEeeccccccccCC----chhhhHHHHhhcccchhhHhh-Cchhhhh
Confidence            3455666666644321      1344556667999999999998873    677778999999999999884 5566777


Q ss_pred             hcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCC
Q 042944          138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKN  217 (637)
Q Consensus       138 ~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~  217 (637)
                      . .+|++|.|.+|.+. .+|. .+..+++|++|++++|.+..+|..+..+..+..+..++|...    ..++..      
T Consensus        90 ~-~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~------  156 (1081)
T KOG0618|consen   90 M-RNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKI----QRLGQT------  156 (1081)
T ss_pred             h-hcchhheeccchhh-cCch-hHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhh----hhhccc------
Confidence            7 99999999999998 8888 799999999999999999999999999999999999999322    122222      


Q ss_pred             cccEEEcCCCCCCCC-cCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccC
Q 042944          218 SLEILKLGGNKLTGS-LPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSD  296 (637)
Q Consensus       218 ~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  296 (637)
                      .++.+++..|.+... +.++..+..  .|++++|.+.   ...+..+.+|+.+..+.|++....   ..-++++.|+.++
T Consensus       157 ~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~  228 (1081)
T KOG0618|consen  157 SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE---ISGPSLTALYADH  228 (1081)
T ss_pred             cchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE---ecCcchheeeecc
Confidence            467777777766543 234444444  6999999986   244677888999999998876322   1267899999999


Q ss_pred             CcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCc
Q 042944          297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHF  376 (637)
Q Consensus       297 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  376 (637)
                      |.++....  -....+|+.+++++|.+... + .++..+.+|+.++...|.++ ..+.......+|+.+.+..|.+. ..
T Consensus       229 n~l~~~~~--~p~p~nl~~~dis~n~l~~l-p-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yi  302 (1081)
T KOG0618|consen  229 NPLTTLDV--HPVPLNLQYLDISHNNLSNL-P-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YI  302 (1081)
T ss_pred             Ccceeecc--ccccccceeeecchhhhhcc-h-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hC
Confidence            99984332  22345799999999999874 4 68999999999999999994 44555667778888888888776 44


Q ss_pred             cccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCc
Q 042944          377 PKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNV  456 (637)
Q Consensus       377 ~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L  456 (637)
                      |......+.|+.|+|..|.+.......+......+..|+.+.|++.......-..                     .+.|
T Consensus       303 p~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~---------------------~~~L  361 (1081)
T KOG0618|consen  303 PPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN---------------------HAAL  361 (1081)
T ss_pred             CCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh---------------------hHHH
Confidence            5556778888888888888877554333333234777777777765433222222                     3355


Q ss_pred             cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCC
Q 042944          457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNE  536 (637)
Q Consensus       457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~  536 (637)
                      +.|++.+|.+++..-..... .++|+.|+|++|++.......+.+++.|++|+++||+++         .+|..+.+++.
T Consensus       362 q~LylanN~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~---------~Lp~tva~~~~  431 (1081)
T KOG0618|consen  362 QELYLANNHLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT---------TLPDTVANLGR  431 (1081)
T ss_pred             HHHHHhcCcccccchhhhcc-ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh---------hhhHHHHhhhh
Confidence            56666666655432111111 167777777777776444456677777888888888777         77777777778


Q ss_pred             CcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccccc-CCccccCCCCCcEeeCCCCcccccccccccccccceeecc
Q 042944          537 LKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS-IPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKAS  615 (637)
Q Consensus       537 L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l  615 (637)
                      |++|...+|++. ..| .+. .++.|+.+|++.|.++.. +|..... ++|++||++||.-...--+.|..+..+...++
T Consensus       432 L~tL~ahsN~l~-~fP-e~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i  507 (1081)
T KOG0618|consen  432 LHTLRAHSNQLL-SFP-ELA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDI  507 (1081)
T ss_pred             hHHHhhcCCcee-ech-hhh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheec
Confidence            888887777776 667 455 477788888888777633 3333322 67788888887633233344555555555444


Q ss_pred             CCC
Q 042944          616 SNS  618 (637)
Q Consensus       616 ~~n  618 (637)
                      .-+
T Consensus       508 ~~~  510 (1081)
T KOG0618|consen  508 TLN  510 (1081)
T ss_pred             ccC
Confidence            433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.8e-33  Score=274.20  Aligned_cols=385  Identities=26%  Similarity=0.328  Sum_probs=260.3

Q ss_pred             CCCCCCEEEcCCCcccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCC
Q 042944          163 NMTALQHLNLSLNQISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFS  240 (637)
Q Consensus       163 ~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~  240 (637)
                      -++-.+-.++++|.++.  +|..+..|++++.|.+....+. ..|+.++.+.     +|++|.+++|++......+..++
T Consensus         5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lq-----kLEHLs~~HN~L~~vhGELs~Lp   78 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQ-----KLEHLSMAHNQLISVHGELSDLP   78 (1255)
T ss_pred             ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHh-----hhhhhhhhhhhhHhhhhhhccch
Confidence            34556677888888774  7888888888888888888776 7788888887     88888888888877666777777


Q ss_pred             CccEEEccCCcCCC-CCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecC
Q 042944          241 SLQELHLFDNKLDG-SFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLF  319 (637)
Q Consensus       241 ~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  319 (637)
                      .|+.+.+++|++.. -.|..+-.+..|..|++++|++...+..+....++-.|+|++|.|..+.-..+.+++.|-.|+++
T Consensus        79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS  158 (1255)
T KOG0444|consen   79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS  158 (1255)
T ss_pred             hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc
Confidence            77777777776642 23334445566666666666666555555555555666666666654433444455555566666


Q ss_pred             CCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCC-C
Q 042944          320 GNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEIS-D  398 (637)
Q Consensus       320 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~-~  398 (637)
                      +|++....|  ....+..|++|++++|++...                        -...+..+++|+.|.+++.+-+ +
T Consensus       159 ~NrLe~LPP--Q~RRL~~LqtL~Ls~NPL~hf------------------------QLrQLPsmtsL~vLhms~TqRTl~  212 (1255)
T KOG0444|consen  159 NNRLEMLPP--QIRRLSMLQTLKLSNNPLNHF------------------------QLRQLPSMTSLSVLHMSNTQRTLD  212 (1255)
T ss_pred             cchhhhcCH--HHHHHhhhhhhhcCCChhhHH------------------------HHhcCccchhhhhhhcccccchhh
Confidence            665554322  245555555555555554311                        1122334555566666654322 2


Q ss_pred             ccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccC
Q 042944          399 AVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISG  478 (637)
Q Consensus       399 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  478 (637)
                      ..|..+.++ .+|..+|++.|.+. ..|..+..++                     +|+.|+|++|+|+........+  
T Consensus       213 N~Ptsld~l-~NL~dvDlS~N~Lp-~vPecly~l~---------------------~LrrLNLS~N~iteL~~~~~~W--  267 (1255)
T KOG0444|consen  213 NIPTSLDDL-HNLRDVDLSENNLP-IVPECLYKLR---------------------NLRRLNLSGNKITELNMTEGEW--  267 (1255)
T ss_pred             cCCCchhhh-hhhhhccccccCCC-cchHHHhhhh---------------------hhheeccCcCceeeeeccHHHH--
Confidence            233333332 55666666666554 3444444444                     5555555555555433333333  


Q ss_pred             CCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhc
Q 042944          479 EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDT  558 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~  558 (637)
                      .+|+.|++|.|+++ .+|++++.+++|+.|+..+|+++      |. .+|++++.+..|+.+..++|.+. .+|.++. .
T Consensus       268 ~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~------Fe-GiPSGIGKL~~Levf~aanN~LE-lVPEglc-R  337 (1255)
T KOG0444|consen  268 ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT------FE-GIPSGIGKLIQLEVFHAANNKLE-LVPEGLC-R  337 (1255)
T ss_pred             hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc------cc-CCccchhhhhhhHHHHhhccccc-cCchhhh-h
Confidence            78899999999998 89999999999999999999988      44 59999999999999999999997 9999999 5


Q ss_pred             CCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeecc
Q 042944          559 LPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKAS  615 (637)
Q Consensus       559 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l  615 (637)
                      |++|+.|.|++|++- .+|+++.-++.|+.||+..|+-.-..|.-=..-++|+.-+|
T Consensus       338 C~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI  393 (1255)
T KOG0444|consen  338 CVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI  393 (1255)
T ss_pred             hHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence            999999999999987 79999999999999999999876333332222245554444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=4.5e-32  Score=267.36  Aligned_cols=382  Identities=23%  Similarity=0.319  Sum_probs=213.3

Q ss_pred             CccEEECCCCCCC-chhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEE
Q 042944          116 SLTLLDLSSCGLS-NSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLH  194 (637)
Q Consensus       116 ~L~~L~L~~n~i~-~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~  194 (637)
                      -.+-.|+++|.++ +..|..+... +.++.|.|....+. .+|. .++.+.+|++|.+++|++.++-..+..++.|+.+.
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI   84 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHh-hheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence            3444555555554 2334444444 55555555555555 5555 45555555555555555555555555555555555


Q ss_pred             cCCCcCCC-CchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCC
Q 042944          195 LFDNNLTG-QLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDG  273 (637)
Q Consensus       195 l~~n~i~~-~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~  273 (637)
                      +..|++.. -.|..+-++.     .|..|++++|++.+.+..+...+++-.|++++|+|..+....|.+++.|-.|++++
T Consensus        85 ~R~N~LKnsGiP~diF~l~-----dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRLK-----DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             hhccccccCCCCchhcccc-----cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence            55554432 1233344444     55555555555555555555555555556666655544445555666666666666


Q ss_pred             CCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCc-cchhhhcCCCCCcEEEccCCcccccc
Q 042944          274 NQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM-ITESHVSNLSKLKYMDFSFNSLALNF  352 (637)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~  352 (637)
                      |++...+|....+..|+.|+|++|++...-...+..+++|+.|.+++..-+-. +|. .+..+.+|..+|++.|.+.   
T Consensus       160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp---  235 (1255)
T KOG0444|consen  160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLP---  235 (1255)
T ss_pred             chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC-chhhhhhhhhccccccCCC---
Confidence            66665555555566666666666665543333344555566666665543211 222 3444555555555555554   


Q ss_pred             cCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCC
Q 042944          353 SFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNY  432 (637)
Q Consensus       353 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~  432 (637)
                                            ..|+.+-.+++|+.|+|++|+|+..... ...+ .+|++|+++.|.++ ..|+.+..+
T Consensus       236 ----------------------~vPecly~l~~LrrLNLS~N~iteL~~~-~~~W-~~lEtLNlSrNQLt-~LP~avcKL  290 (1255)
T KOG0444|consen  236 ----------------------IVPECLYKLRNLRRLNLSGNKITELNMT-EGEW-ENLETLNLSRNQLT-VLPDAVCKL  290 (1255)
T ss_pred             ----------------------cchHHHhhhhhhheeccCcCceeeeecc-HHHH-hhhhhhccccchhc-cchHHHhhh
Confidence                                  5566667777777777777777653321 1122 57888888888877 566667777


Q ss_pred             CCCCeEeCCCCcCcCC-CCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEecc
Q 042944          433 AGYPGIDLSSNDFEGP-VPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLA  511 (637)
Q Consensus       433 ~~L~~L~l~~n~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  511 (637)
                      +.|+.|++.+|+++.. +|....+|                      ..|+.+..++|.+. .+|+.++.|++|+.|.|+
T Consensus       291 ~kL~kLy~n~NkL~FeGiPSGIGKL----------------------~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~  347 (1255)
T KOG0444|consen  291 TKLTKLYANNNKLTFEGIPSGIGKL----------------------IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLD  347 (1255)
T ss_pred             HHHHHHHhccCcccccCCccchhhh----------------------hhhHHHHhhccccc-cCchhhhhhHHHHHhccc
Confidence            7777777666665421 11111111                      44555555666555 666777777777777777


Q ss_pred             CccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEec
Q 042944          512 NNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSL  567 (637)
Q Consensus       512 ~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L  567 (637)
                      .|.+.         .+|+.+.-++.|+.||+..|.-. .+|..-.+.-++|+.-++
T Consensus       348 ~NrLi---------TLPeaIHlL~~l~vLDlreNpnL-VMPPKP~da~~~lefYNI  393 (1255)
T KOG0444|consen  348 HNRLI---------TLPEAIHLLPDLKVLDLRENPNL-VMPPKPNDARKKLEFYNI  393 (1255)
T ss_pred             cccee---------echhhhhhcCCcceeeccCCcCc-cCCCCcchhhhcceeeec
Confidence            77666         66666666777777777766544 444333222244544444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=9.8e-26  Score=211.61  Aligned_cols=133  Identities=26%  Similarity=0.384  Sum_probs=107.6

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCC-CCCCCCCCchhccCCCC
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNS-NQLAGPIPDYAFSNMTA  166 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~-n~l~~~l~~~~~~~l~~  166 (637)
                      +....++|..|.|+.+++   .+|..+++|+.|||++|.|+.+.|++|..+ ++|..|-+.+ |+|+ .+|.++|.++..
T Consensus        67 ~~tveirLdqN~I~~iP~---~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL-~~l~~Lvlyg~NkI~-~l~k~~F~gL~s  141 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPP---GAFKTLHRLRRLDLSKNNISFIAPDAFKGL-ASLLSLVLYGNNKIT-DLPKGAFGGLSS  141 (498)
T ss_pred             CcceEEEeccCCcccCCh---hhccchhhhceecccccchhhcChHhhhhh-HhhhHHHhhcCCchh-hhhhhHhhhHHH
Confidence            467888999999999886   445555899999999999998888888777 6666655555 8898 899889999999


Q ss_pred             CCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCC
Q 042944          167 LQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLT  230 (637)
Q Consensus       167 L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~  230 (637)
                      |+.|.+.-|++.-+ .+.|..+++|..|.+.+|.+....-..|..+.     .++.+.+..|...
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~-----~i~tlhlA~np~i  201 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLA-----AIKTLHLAQNPFI  201 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchh-----ccchHhhhcCccc
Confidence            99999998888885 56788999999999999988755555777777     8888888877643

>PLN03210 Resistant to P

Probab=99.89  E-value=2.7e-21  Score=223.40  Aligned_cols=126  Identities=18%  Similarity=0.131  Sum_probs=52.7

Q ss_pred             CCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEccc
Q 042944          384 KNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSN  463 (637)
Q Consensus       384 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~  463 (637)
                      ++|+.|++++|......|..+..+ ++|+.|++++|.....+|... .+++|+.|++++|......|..+.++++|++++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~  855 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR  855 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCC-CCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence            344555555544444344443332 455555555443322333222 344555555555544333333344444444444


Q ss_pred             ccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCc
Q 042944          464 NKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANN  513 (637)
Q Consensus       464 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  513 (637)
                      |.+...+..+..  .++|+.|++++|.-...+|..+..+++|+.+++++|
T Consensus       856 n~i~~iP~si~~--l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        856 TGIEEVPWWIEK--FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCccChHHHhc--CCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            444432221111  144444444443222233333444444444444444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.89  E-value=2.2e-21  Score=224.01  Aligned_cols=339  Identities=21%  Similarity=0.220  Sum_probs=254.6

Q ss_pred             hhhcCCCCCCcEEEcCCCcC------CCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCC
Q 042944          181 SKSFGNMCGLKTLHLFDNNL------TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDG  254 (637)
Q Consensus       181 ~~~~~~l~~L~~L~l~~n~i------~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~  254 (637)
                      +.+|.+|++|+.|.+..+..      ....|..+..++    ++|+.|++.++.+...+..+ ...+|++|++.++.+. 
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp----~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP----PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcC----cccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-
Confidence            35688889999988865532      224566666554    27999999998888665554 5678999999999887 


Q ss_pred             CCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcC
Q 042944          255 SFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSN  334 (637)
Q Consensus       255 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~  334 (637)
                      ..+..+..+++|+.++++++......+.+..+++|+.|++++|.....+|..+..+++|+.|++++|......+..  .+
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~  702 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--IN  702 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CC
Confidence            4566778889999999998765556667777899999999998766678888889999999999998654444442  27


Q ss_pred             CCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCc------cchhhhhcC
Q 042944          335 LSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDA------VPSWFWDLS  408 (637)
Q Consensus       335 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~------~~~~~~~~~  408 (637)
                      +++|+.|++++|......+.   ...+|+.|++.++.+. .+|..+ .+++|++|++.++.....      .+......+
T Consensus       703 l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~  777 (1153)
T PLN03210        703 LKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLS  777 (1153)
T ss_pred             CCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcc
Confidence            88999999999865444332   2457889999998875 345433 578888888876432111      111122335


Q ss_pred             CCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC--CCCccEEEcccccccCcccccccccCCCccEEeC
Q 042944          409 PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV--PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDV  486 (637)
Q Consensus       409 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  486 (637)
                      ++|++|++++|.....+|..+..+++|+.|++++|...+..|..  +++|++|++++|......+...    ++|+.|++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~----~nL~~L~L  853 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS----TNISDLNL  853 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccc----cccCEeEC
Confidence            79999999999888788888999999999999999755555543  6889999999986554444322    78999999


Q ss_pred             CCCCCcccCchhhhccCCCcEEeccCcc-CCCCccccccccCCccccCCCCCcEEEcCCCc
Q 042944          487 SDNLLSGELPDCLLRWQALAVLNLANNN-FSGNFLTFFVGEIPPSLKKCNELKIIDAGDNK  546 (637)
Q Consensus       487 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~  546 (637)
                      ++|.++ .+|..+..+++|+.|++++|+ +.         .+|..+..+++|+.+++++|.
T Consensus       854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~---------~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ---------RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCc-cChHHHhcCCCCCEEECCCCCCcC---------ccCcccccccCCCeeecCCCc
Confidence            999998 688889999999999999964 44         566677788999999999884

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=4.1e-25  Score=207.48  Aligned_cols=147  Identities=26%  Similarity=0.300  Sum_probs=98.0

Q ss_pred             ceeeeeeccccccccccCchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCC
Q 042944           37 VELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTS  116 (637)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~  116 (637)
                      |.|......+++.++++-     ...+.|+-|....+.      ..+|+.+++||+|||++|.|+.+.+++|.++   ++
T Consensus        51 VdCr~~GL~eVP~~LP~~-----tveirLdqN~I~~iP------~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL---~~  116 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLPPE-----TVEIRLDQNQISSIP------PGAFKTLHRLRRLDLSKNNISFIAPDAFKGL---AS  116 (498)
T ss_pred             EEccCCCcccCcccCCCc-----ceEEEeccCCcccCC------hhhccchhhhceecccccchhhcChHhhhhh---Hh
Confidence            344444555555555443     112455554433322      2467788888888888888888876555444   66


Q ss_pred             ccEEECCC-CCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhh-hcCCCCCCcEEE
Q 042944          117 LTLLDLSS-CGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLH  194 (637)
Q Consensus       117 L~~L~L~~-n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~  194 (637)
                      |.+|-+.+ |+|++.....|.++ ..|+.|.+.-|++. .++.++|..+++|..|.+.+|.+..+++ .|..+..++.+.
T Consensus       117 l~~Lvlyg~NkI~~l~k~~F~gL-~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh  194 (498)
T KOG4237|consen  117 LLSLVLYGNNKITDLPKGAFGGL-SSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH  194 (498)
T ss_pred             hhHHHhhcCCchhhhhhhHhhhH-HHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence            66665555 77775544444444 88888888888887 7777788888888888888888888766 677888888887


Q ss_pred             cCCCc
Q 042944          195 LFDNN  199 (637)
Q Consensus       195 l~~n~  199 (637)
                      +..|.
T Consensus       195 lA~np  199 (498)
T KOG4237|consen  195 LAQNP  199 (498)
T ss_pred             hhcCc
Confidence            77775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=4.9e-21  Score=204.96  Aligned_cols=142  Identities=23%  Similarity=0.317  Sum_probs=78.7

Q ss_pred             CCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCcc
Q 042944          435 YPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNN  514 (637)
Q Consensus       435 L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  514 (637)
                      |+.|++++|.+.+ .|..+.+|+.|++++|+++..+. .    .++|+.|++++|.+. .+|..   ..+|+.|++++|+
T Consensus       324 L~~L~Ls~N~L~~-LP~lp~~Lq~LdLS~N~Ls~LP~-l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~  393 (788)
T PRK15387        324 LCKLWAYNNQLTS-LPTLPSGLQELSVSDNQLASLPT-L----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNR  393 (788)
T ss_pred             ccccccccCcccc-ccccccccceEecCCCccCCCCC-C----Ccccceehhhccccc-cCccc---ccccceEEecCCc
Confidence            3344444444432 22233455555555555553221 1    145555666666655 23432   2456667777776


Q ss_pred             CCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCC
Q 042944          515 FSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLN  594 (637)
Q Consensus       515 l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n  594 (637)
                      ++         .+|..   .++|+.|++++|.++ .+|..    ..+|+.|++++|+++ .+|..+..+++|+.|++++|
T Consensus       394 Lt---------~LP~l---~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N  455 (788)
T PRK15387        394 LT---------SLPVL---PSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  455 (788)
T ss_pred             cc---------CCCCc---ccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence            66         33432   245667777777776 55542    235666777777776 56666777777777777777


Q ss_pred             cccccccccc
Q 042944          595 SISGAIPKCI  604 (637)
Q Consensus       595 ~l~~~~p~~l  604 (637)
                      ++++..|..+
T Consensus       456 ~Ls~~~~~~L  465 (788)
T PRK15387        456 PLSERTLQAL  465 (788)
T ss_pred             CCCchHHHHH
Confidence            7776655555

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.4e-20  Score=199.74  Aligned_cols=198  Identities=22%  Similarity=0.286  Sum_probs=148.9

Q ss_pred             CCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEccc
Q 042944          384 KNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSN  463 (637)
Q Consensus       384 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~  463 (637)
                      ++|+.|++++|.+.... .    .+++|+.|++++|+++....    ..++|+.|++++|++.+. |..+.+|+.|++++
T Consensus       262 ~sL~~L~Ls~N~L~~Lp-~----lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~L-p~lp~~L~~L~Ls~  331 (788)
T PRK15387        262 PGLLELSIFSNPLTHLP-A----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PALPSELCKLWAYN  331 (788)
T ss_pred             cccceeeccCCchhhhh-h----chhhcCEEECcCCccccccc----cccccceeECCCCccccC-CCCccccccccccc
Confidence            35556666666554321 1    22466677777777664322    235678888888877753 44567899999999


Q ss_pred             ccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcC
Q 042944          464 NKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAG  543 (637)
Q Consensus       464 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls  543 (637)
                      |++++.+ ..    ..+|+.|++++|+++. +|..   .++|+.|++++|++.         .+|..   ..+|+.|+++
T Consensus       332 N~L~~LP-~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~---------~LP~l---~~~L~~LdLs  390 (788)
T PRK15387        332 NQLTSLP-TL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT---------SLPAL---PSGLKELIVS  390 (788)
T ss_pred             Ccccccc-cc----ccccceEecCCCccCC-CCCC---Ccccceehhhccccc---------cCccc---ccccceEEec
Confidence            9998643 21    1689999999999984 5543   367899999999998         45543   2579999999


Q ss_pred             CCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944          544 DNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH  622 (637)
Q Consensus       544 ~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~  622 (637)
                      +|.++ .+|..    .++|+.|++++|+++ .+|..   ..+|+.|++++|+++ .+|+.+..+++|+.+++++|+|+.
T Consensus       391 ~N~Lt-~LP~l----~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        391 GNRLT-SLPVL----PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             CCccc-CCCCc----ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCc
Confidence            99998 67752    468999999999998 57754   357889999999998 789999999999999999999963

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=1.3e-18  Score=187.82  Aligned_cols=246  Identities=18%  Similarity=0.241  Sum_probs=160.5

Q ss_pred             CCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEe
Q 042944          312 KLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDI  391 (637)
Q Consensus       312 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  391 (637)
                      +...|+++++.++.. |.. +  .+.++.|++++|.++..... +  ..+|+.|++.+|.+. .+|..+  .++|+.|++
T Consensus       179 ~~~~L~L~~~~LtsL-P~~-I--p~~L~~L~Ls~N~LtsLP~~-l--~~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILGLTTI-PAC-I--PEQITTLILDNNELKSLPEN-L--QGNIKTLYANSNQLT-SIPATL--PDTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCCcCcC-Ccc-c--ccCCcEEEecCCCCCcCChh-h--ccCCCEEECCCCccc-cCChhh--hccccEEEC
Confidence            567888888887753 331 2  25788899998888744322 2  247888888888776 344433  246788888


Q ss_pred             eCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCccc
Q 042944          392 SDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPIS  471 (637)
Q Consensus       392 ~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~  471 (637)
                      ++|.+.. .|..+   +.+|+.|++++|+++. +|..+  +++|+.|++++|++++.....+++|+.|++++|+++....
T Consensus       249 s~N~L~~-LP~~l---~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~  321 (754)
T PRK15370        249 SINRITE-LPERL---PSALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE  321 (754)
T ss_pred             cCCccCc-CChhH---hCCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCc
Confidence            8888774 34433   2578888888887774 33322  2467888888887776544445567777777777764332


Q ss_pred             ccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccC
Q 042944          472 SLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTI  551 (637)
Q Consensus       472 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~  551 (637)
                      ...    ++|+.|++++|.++. +|..+.  ++|+.|++++|+++         .+|..+  .++|++|++++|.++ .+
T Consensus       322 ~l~----~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~---------~LP~~l--p~~L~~LdLs~N~Lt-~L  382 (754)
T PRK15370        322 TLP----PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT---------VLPETL--PPTITTLDVSRNALT-NL  382 (754)
T ss_pred             ccc----ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC---------cCChhh--cCCcCEEECCCCcCC-CC
Confidence            211    677777777777763 555443  67777777777776         444433  256777777777776 66


Q ss_pred             ChhhhhcCCCCcEEeccCccccccCCccccC----CCCCcEeeCCCCccc
Q 042944          552 PAWIGDTLPKLAILSLRSNQFHGSIPRNLCR----LSKIQLLDFSLNSIS  597 (637)
Q Consensus       552 ~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~----l~~L~~L~ls~n~l~  597 (637)
                      |..+.   +.|+.|++++|++. .+|..+..    ++.+..|++.+|++.
T Consensus       383 P~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        383 PENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            76654   25777777777776 55544433    366777777777776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=1.2e-18  Score=188.23  Aligned_cols=247  Identities=21%  Similarity=0.320  Sum_probs=171.8

Q ss_pred             CCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEcc
Q 042944          265 PLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFS  344 (637)
Q Consensus       265 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  344 (637)
                      +...|+++++.++..+..+  .++++.|++++|.++. +|..+.  ++|+.|++++|.++.. +.. +  .++|+.|+++
T Consensus       179 ~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~LtsL-P~~-l--~~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTSI-PAT-L--PDTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccccC-Chh-h--hccccEEECc
Confidence            3456667666665443322  3456666776666663 333322  3566666666665532 221 1  1244555555


Q ss_pred             CCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCc
Q 042944          345 FNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGT  424 (637)
Q Consensus       345 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~  424 (637)
                      +|                        .+. .+|..+.  .+|+.|++++|.+.. .|..+   +++|+.|++++|.++..
T Consensus       250 ~N------------------------~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l---~~sL~~L~Ls~N~Lt~L  298 (754)
T PRK15370        250 IN------------------------RIT-ELPERLP--SALQSLDLFHNKISC-LPENL---PEELRYLSVYDNSIRTL  298 (754)
T ss_pred             CC------------------------ccC-cCChhHh--CCCCEEECcCCccCc-ccccc---CCCCcEEECCCCccccC
Confidence            44                        443 3344342  479999999999885 44433   36899999999999864


Q ss_pred             ccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCC
Q 042944          425 VLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQA  504 (637)
Q Consensus       425 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  504 (637)
                      ... +  .++|+.|++++|.+.......+++|+.|++++|.++.....+.    ++|+.|++++|.++ .+|..+.  ++
T Consensus       299 P~~-l--p~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~----~sL~~L~Ls~N~L~-~LP~~lp--~~  368 (754)
T PRK15370        299 PAH-L--PSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLP----PELQVLDVSKNQIT-VLPETLP--PT  368 (754)
T ss_pred             ccc-c--hhhHHHHHhcCCccccCCccccccceeccccCCccccCChhhc----CcccEEECCCCCCC-cCChhhc--CC
Confidence            332 2  2479999999999987655567899999999999986443322    79999999999998 5676553  78


Q ss_pred             CcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh---cCCCCcEEeccCcccc
Q 042944          505 LAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD---TLPKLAILSLRSNQFH  573 (637)
Q Consensus       505 L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~---~l~~L~~L~L~~n~~~  573 (637)
                      |+.|++++|+++         .+|..+.  ++|+.|++++|+++ .+|..+..   .++.+..|++.+|+++
T Consensus       369 L~~LdLs~N~Lt---------~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        369 ITTLDVSRNALT---------NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCEEECCCCcCC---------CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            999999999998         5666543  46999999999998 77765542   3588999999999987

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=9.7e-20  Score=151.83  Aligned_cols=159  Identities=25%  Similarity=0.406  Sum_probs=145.5

Q ss_pred             CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcccc
Q 042944          453 PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLK  532 (637)
Q Consensus       453 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~  532 (637)
                      ..+++.|.+++|+++.+.|.+...  .+|+.|++++|+++ .+|..++.+++|+.|+++-|++.         .+|.+++
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l--~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~---------~lprgfg   99 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAEL--KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN---------ILPRGFG   99 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHh--hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh---------cCccccC
Confidence            346788888888888888877766  89999999999998 78899999999999999999998         8999999


Q ss_pred             CCCCCcEEEcCCCccc-ccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccce
Q 042944          533 KCNELKIIDAGDNKFS-GTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMV  611 (637)
Q Consensus       533 ~l~~L~~L~ls~n~l~-~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~  611 (637)
                      .++.|+.||+++|.+. ..+|..+| .++.|+.|+|++|.+. .+|..++++++||.|.+.+|.+. .+|..++.+++|+
T Consensus       100 s~p~levldltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr  176 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR  176 (264)
T ss_pred             CCchhhhhhccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence            9999999999999886 46888888 6999999999999998 89999999999999999999999 8899999999999


Q ss_pred             eeccCCCeeEEEEEE
Q 042944          612 EKASSNSTITHIYVY  626 (637)
Q Consensus       612 ~l~l~~n~l~~~~~~  626 (637)
                      +|+++||+++.+|..
T Consensus       177 elhiqgnrl~vlppe  191 (264)
T KOG0617|consen  177 ELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHhcccceeeecChh
Confidence            999999999988743

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=4.6e-19  Score=178.44  Aligned_cols=288  Identities=20%  Similarity=0.215  Sum_probs=160.9

Q ss_pred             EEEccCCcCCC-CChhhhcCCCCCCEEecCCCcCCCccc---hhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEe
Q 042944          291 RLDVSDSRLNG-TVSEGLGRLSKLEFLDLFGNSLEGMIT---ESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIG  366 (637)
Q Consensus       291 ~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~  366 (637)
                      .|+|.++.+.+ .....+..++.|+.++++++.+++...   ...+...+.+++++++++.+... .             
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~-------------   67 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-P-------------   67 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-c-------------
Confidence            45666666653 334445566678888888887754211   12345566677777776655410 0             


Q ss_pred             ccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcC--CCccEEECCCCcCCCccc----ccccCCCCCCeEeC
Q 042944          367 LLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLS--PNLYYLNLSHNHLEGTVL----DLSLNYAGYPGIDL  440 (637)
Q Consensus       367 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l  440 (637)
                          ......+..+..+++|+.|++++|.+.+..+..+....  ++|++|++++|++++...    ..+..+        
T Consensus        68 ----~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~--------  135 (319)
T cd00116          68 ----RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL--------  135 (319)
T ss_pred             ----hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC--------
Confidence                00012233445566666666666666554444433331  226666666666653111    112222        


Q ss_pred             CCCcCcCCCCCCCCCccEEEcccccccCccccc---ccccCCCccEEeCCCCCCccc----CchhhhccCCCcEEeccCc
Q 042944          441 SSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSL---CSISGEYFSYLDVSDNLLSGE----LPDCLLRWQALAVLNLANN  513 (637)
Q Consensus       441 ~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---~~~~~~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n  513 (637)
                                  .++|++|++++|.+++.....   .....+.|++|++++|.+++.    ++..+..+++|++|++++|
T Consensus       136 ------------~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  203 (319)
T cd00116         136 ------------PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN  203 (319)
T ss_pred             ------------CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence                        123444444444443211100   011115677777777776632    2334555568888888888


Q ss_pred             cCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhc----CCCCcEEeccCccccc----cCCccccCCCC
Q 042944          514 NFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDT----LPKLAILSLRSNQFHG----SIPRNLCRLSK  585 (637)
Q Consensus       514 ~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~----l~~L~~L~L~~n~~~~----~~~~~l~~l~~  585 (637)
                      .+.+....    .++..+..+++|++|++++|.+++.....+.+.    .+.|++|++++|.++.    .+...+..+++
T Consensus       204 ~i~~~~~~----~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~  279 (319)
T cd00116         204 GLTDEGAS----ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES  279 (319)
T ss_pred             ccChHHHH----HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC
Confidence            77643222    233445667888888888888774333333332    3688888888888752    23445666688


Q ss_pred             CcEeeCCCCccccc----cccccccc-ccceeeccCCCee
Q 042944          586 IQLLDFSLNSISGA----IPKCINNL-TAMVEKASSNSTI  620 (637)
Q Consensus       586 L~~L~ls~n~l~~~----~p~~l~~l-~~L~~l~l~~n~l  620 (637)
                      |+.+++++|.+...    +...+... +.|+++++.+|++
T Consensus       280 L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         280 LLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             ccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            88888888888744    33344444 6778888877753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=3.3e-18  Score=172.23  Aligned_cols=71  Identities=30%  Similarity=0.394  Sum_probs=34.2

Q ss_pred             hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC-----cCCcccC-CCccEEEccCCcCC
Q 042944          181 SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS-----LPDITEF-SSLQELHLFDNKLD  253 (637)
Q Consensus       181 ~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~-~~L~~L~l~~n~i~  253 (637)
                      +..+..+++|+.|++++|.+....+..+..+...  ++|++|++++|.+...     ...+..+ ++|++|++++|.++
T Consensus        74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~--~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116          74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS--SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             HHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc--CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            3445555666666666665554444555444411  1255555555554420     0112233 45555555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=6.8e-18  Score=140.89  Aligned_cols=164  Identities=30%  Similarity=0.470  Sum_probs=126.7

Q ss_pred             cccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCC
Q 042944          109 SSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMC  188 (637)
Q Consensus       109 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~  188 (637)
                      .++..+.+++.|.+|+|+++. .|..+..+ .+|+.|++.+|++. ++|. .++.++.|+.|+++-|++..+|..|+.++
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~-vppnia~l-~nlevln~~nnqie-~lp~-~issl~klr~lnvgmnrl~~lprgfgs~p  102 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTV-VPPNIAEL-KNLEVLNLSNNQIE-ELPT-SISSLPKLRILNVGMNRLNILPRGFGSFP  102 (264)
T ss_pred             ccccchhhhhhhhcccCceee-cCCcHHHh-hhhhhhhcccchhh-hcCh-hhhhchhhhheecchhhhhcCccccCCCc
Confidence            445556778888888888874 44447777 88888888888887 8887 77888888888888888888888888888


Q ss_pred             CCcEEEcCCCcCC-CCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCc
Q 042944          189 GLKTLHLFDNNLT-GQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLV  267 (637)
Q Consensus       189 ~L~~L~l~~n~i~-~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~  267 (637)
                      .|++||+..|.+. ...|..|..+.     .|+.|++++|.+...+++++.+++|+.|.+++|.+. ..|..++.++.|+
T Consensus       103 ~levldltynnl~e~~lpgnff~m~-----tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lr  176 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMT-----TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLR  176 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHH-----HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHH
Confidence            8888888877765 34677777777     788888888888877778888888888888888766 4677777777777


Q ss_pred             EEEcCCCCCCCCCCC
Q 042944          268 ILNLDGNQLWGSLPD  282 (637)
Q Consensus       268 ~L~l~~~~~~~~~~~  282 (637)
                      +|.+.+|+++..++.
T Consensus       177 elhiqgnrl~vlppe  191 (264)
T KOG0617|consen  177 ELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHhcccceeeecChh
Confidence            777777777655544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=3.3e-13  Score=129.79  Aligned_cols=209  Identities=21%  Similarity=0.162  Sum_probs=137.5

Q ss_pred             cCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhh-hHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944           85 TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAY-HWLFKISSNLLALDLNSNQLAGPIPDYAFSN  163 (637)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~  163 (637)
                      +++++|+.+.|.++.+......  .....|++++.||||.|-+....+ ..+..-+|+|+.|+++.|.+........-..
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            5678899999999888766421  345667999999999998775443 2455556999999999998763333322346


Q ss_pred             CCCCCEEEcCCCcccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCc--CCcccC
Q 042944          164 MTALQHLNLSLNQISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSL--PDITEF  239 (637)
Q Consensus       164 l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~--~~~~~~  239 (637)
                      +++|+.|.++.|.++.  +...+..+|+|+.|++..|...........-+.     .|+.|+|++|.+.+..  .....+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~-----~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ-----TLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh-----HHhhccccCCcccccccccccccc
Confidence            7889999999998875  445567789999999988853323333344444     8888999988877544  446777


Q ss_pred             CCccEEEccCCcCCCCCCCcC------CCCCCCcEEEcCCCCCC--CCCCCCCCCCCCCEEEccCCcCC
Q 042944          240 SSLQELHLFDNKLDGSFPEKF------RKPSPLVILNLDGNQLW--GSLPDLSVFPFLTRLDVSDSRLN  300 (637)
Q Consensus       240 ~~L~~L~l~~n~i~~~~~~~l------~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~n~~~  300 (637)
                      +.|+.|+++.+.+........      ..+++|+.|++..|++.  .....+..+++|+.|.+..|.++
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            788888888887764322222      33455666666666552  22223333445555554444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.34  E-value=1.5e-13  Score=125.53  Aligned_cols=236  Identities=20%  Similarity=0.258  Sum_probs=156.1

Q ss_pred             ccccCCCCccEEEeeCCC--CCC------ccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCC
Q 042944          378 KWLQSQKNYYFLDISDTE--ISD------AVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPV  449 (637)
Q Consensus       378 ~~l~~~~~L~~L~l~~n~--i~~------~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~  449 (637)
                      ..+..+..|++|.++...  +..      ..+..+ ..+.+|.++.++.+.-.. +......-|.|.++.+....+.. .
T Consensus       176 hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l-~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~-~  252 (490)
T KOG1259|consen  176 HVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNL-NAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQD-V  252 (490)
T ss_pred             HHHHhhhheeEEEecCCCCCCccccccccccccch-HHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccc-c
Confidence            445567788888877542  111      111111 112566666666664332 22223344556666655444331 2


Q ss_pred             CCCCCCccEEEcccccc---cCc-ccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccc
Q 042944          450 PPVPGNVTSLNLSNNKF---SGP-ISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVG  525 (637)
Q Consensus       450 ~~~~~~L~~L~L~~n~l---~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  525 (637)
                      +...|.-..-|.....-   +|. ...+..+  ..|+.+|+|+|.++ .+.+.+.-.|+++.|++++|.|.         
T Consensus       253 ~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW--q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~---------  320 (490)
T KOG1259|consen  253 PSLLPETILADPSGSEPSTSNGSALVSADTW--QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR---------  320 (490)
T ss_pred             ccccchhhhcCccCCCCCccCCceEEecchH--hhhhhccccccchh-hhhhhhhhccceeEEecccccee---------
Confidence            22222111222221110   110 1112222  78899999999998 66777888899999999999998         


Q ss_pred             cCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccc-cccc
Q 042944          526 EIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAI-PKCI  604 (637)
Q Consensus       526 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~-p~~l  604 (637)
                      .+. .++.+++|+.||+|+|.++ .+..+-. .+-+.++|+|+.|.+. .+ .++..+-+|..||+++|+|.+.- -..+
T Consensus       321 ~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~-KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~I  395 (490)
T KOG1259|consen  321 TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHL-KLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLSSNQIEELDEVNHI  395 (490)
T ss_pred             eeh-hhhhcccceEeecccchhH-hhhhhHh-hhcCEeeeehhhhhHh-hh-hhhHhhhhheeccccccchhhHHHhccc
Confidence            333 3788999999999999997 7776655 6999999999999997 33 57899999999999999998532 2478


Q ss_pred             cccccceeeccCCCeeEEEEEEEeeeeecc
Q 042944          605 NNLTAMVEKASSNSTITHIYVYYRSATLDG  634 (637)
Q Consensus       605 ~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~  634 (637)
                      +++|-|+++.+.||+|..+ +.||..++..
T Consensus       396 G~LPCLE~l~L~~NPl~~~-vdYRTKVLa~  424 (490)
T KOG1259|consen  396 GNLPCLETLRLTGNPLAGS-VDYRTKVLAR  424 (490)
T ss_pred             ccccHHHHHhhcCCCcccc-chHHHHHHHH
Confidence            9999999999999999988 5566655543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.31  E-value=6.9e-14  Score=138.54  Aligned_cols=152  Identities=30%  Similarity=0.479  Sum_probs=111.4

Q ss_pred             CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcccc
Q 042944          453 PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLK  532 (637)
Q Consensus       453 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~  532 (637)
                      +..|..+.+.+|.+......++..  ..|++|+++.|++. .+|..++.|| |+.|.+++|+++         .+|+.++
T Consensus        97 f~~Le~liLy~n~~r~ip~~i~~L--~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~---------~lp~~ig  163 (722)
T KOG0532|consen   97 FVSLESLILYHNCIRTIPEAICNL--EALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT---------SLPEEIG  163 (722)
T ss_pred             HHHHHHHHHHhccceecchhhhhh--hHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc---------cCCcccc
Confidence            445666666666665554444444  66777777777776 6777777766 788888888877         7777777


Q ss_pred             CCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccccccccee
Q 042944          533 KCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVE  612 (637)
Q Consensus       533 ~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~  612 (637)
                      .++.|..||.+.|.+. .+|..+. ++.+|+.|+++.|++. .+|..+..++ |..||+|+|++. .+|-+|..++.|++
T Consensus       164 ~~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~  238 (722)
T KOG0532|consen  164 LLPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQV  238 (722)
T ss_pred             cchhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhhee
Confidence            7777888888888886 7777777 5788888888888877 5666677544 777888888887 77888888888888


Q ss_pred             eccCCCeeEE
Q 042944          613 KASSNSTITH  622 (637)
Q Consensus       613 l~l~~n~l~~  622 (637)
                      |-|.+|+|++
T Consensus       239 l~LenNPLqS  248 (722)
T KOG0532|consen  239 LQLENNPLQS  248 (722)
T ss_pred             eeeccCCCCC
Confidence            8888888764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=4.4e-13  Score=128.93  Aligned_cols=87  Identities=21%  Similarity=0.296  Sum_probs=53.0

Q ss_pred             cCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCC--cccccccCCCCCCeEeCCCCcCcCCCCC----CCC
Q 042944          381 QSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG--TVLDLSLNYAGYPGIDLSSNDFEGPVPP----VPG  454 (637)
Q Consensus       381 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~  454 (637)
                      .++.+|+.+.|.++.+...+.......+++++.||++.|-++.  .+......+|+|+.|+++.|++......    .++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            4567778888888777665554555666888888888876654  2334445667777777777665422211    144


Q ss_pred             CccEEEccccccc
Q 042944          455 NVTSLNLSNNKFS  467 (637)
Q Consensus       455 ~L~~L~L~~n~l~  467 (637)
                      +++.|.+++|.++
T Consensus       198 ~lK~L~l~~CGls  210 (505)
T KOG3207|consen  198 HLKQLVLNSCGLS  210 (505)
T ss_pred             hhheEEeccCCCC
Confidence            5555555555444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.26  E-value=2.6e-12  Score=120.36  Aligned_cols=240  Identities=24%  Similarity=0.300  Sum_probs=142.0

Q ss_pred             cccCCCCCccEEECCCCCCCchhhhHHHhhc---CCCcEEECCCCC---CCCCCCc------hhccCCCCCCEEEcCCCc
Q 042944          109 SSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS---SNLLALDLNSNQ---LAGPIPD------YAFSNMTALQHLNLSLNQ  176 (637)
Q Consensus       109 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~---~~L~~L~L~~n~---l~~~l~~------~~~~~l~~L~~L~L~~n~  176 (637)
                      +.+.....++.+++++|.+.......+.+.+   +.|+..+++.--   ....+|.      .++..+++|++|+||+|.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            4455567788888888877755444444332   456666666431   1112332      145567788888888887


Q ss_pred             ccc-----hhhhcCCCCCCcEEEcCCCcCCCCchhHhhh----c----ccCCCCcccEEEcCCCCCCCCcC-----Cccc
Q 042944          177 ISA-----ISKSFGNMCGLKTLHLFDNNLTGQLPELFLN----L----SGCSKNSLEILKLGGNKLTGSLP-----DITE  238 (637)
Q Consensus       177 l~~-----l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~----l----~~~~~~~L~~L~l~~n~~~~~~~-----~~~~  238 (637)
                      +..     +.+-+..+..|++|.+.+|.+.-.....+++    +    ..-..++|+++..++|++.....     .+..
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~  183 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS  183 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence            665     3345677888888888888776332233221    1    11234577888888777764322     1455


Q ss_pred             CCCccEEEccCCcCCCC----CCCcCCCCCCCcEEEcCCCCCCCCC-----CCCCCCCCCCEEEccCCcCCCCChhhh--
Q 042944          239 FSSLQELHLFDNKLDGS----FPEKFRKPSPLVILNLDGNQLWGSL-----PDLSVFPFLTRLDVSDSRLNGTVSEGL--  307 (637)
Q Consensus       239 ~~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~~~~~~l--  307 (637)
                      .+.|+.+.+..|.|...    ....|..+++|+.|++..|.++...     ..+..+++|++|++++|.+......++  
T Consensus       184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            56777777777766422    2234566777777777777665321     223346677777777776665333222  


Q ss_pred             ---cCCCCCCEEecCCCcCCCccc---hhhhcCCCCCcEEEccCCcc
Q 042944          308 ---GRLSKLEFLDLFGNSLEGMIT---ESHVSNLSKLKYMDFSFNSL  348 (637)
Q Consensus       308 ---~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~~  348 (637)
                         ...|+|+.+.+.+|.++....   .......+.|+.|++++|.+
T Consensus       264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence               245677777777777664321   12334456677777777766

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.22  E-value=2.2e-12  Score=120.90  Aligned_cols=251  Identities=22%  Similarity=0.226  Sum_probs=133.2

Q ss_pred             CCCcEEECCCCCCCCC----CCchhccCCCCCCEEEcCCCcc---cc-hh-------hhcCCCCCCcEEEcCCCcCCCCc
Q 042944          140 SNLLALDLNSNQLAGP----IPDYAFSNMTALQHLNLSLNQI---SA-IS-------KSFGNMCGLKTLHLFDNNLTGQL  204 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~----l~~~~~~~l~~L~~L~L~~n~l---~~-l~-------~~~~~l~~L~~L~l~~n~i~~~~  204 (637)
                      ..+++++|++|.+...    +.. .+...++|+..++++--.   .. +|       +++.++++|++|+||+|-+....
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~-~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAK-VLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHH-HHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            5566677776665411    111 344555666666555311   11 22       23445555555566555554444


Q ss_pred             hhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCC
Q 042944          205 PELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLS  284 (637)
Q Consensus       205 ~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~  284 (637)
                      ++.|..+                        +..+..|++|++.+|.+.......++.  .|..+.  .+      ....
T Consensus       109 ~~~l~~l------------------------l~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~------kk~~  154 (382)
T KOG1909|consen  109 IRGLEEL------------------------LSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VN------KKAA  154 (382)
T ss_pred             hHHHHHH------------------------HHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HH------hccC
Confidence            4444432                        344667888888888765322222211  111111  11      1122


Q ss_pred             CCCCCCEEEccCCcCCCC----ChhhhcCCCCCCEEecCCCcCCCccc---hhhhcCCCCCcEEEccCCcccccccCCCC
Q 042944          285 VFPFLTRLDVSDSRLNGT----VSEGLGRLSKLEFLDLFGNSLEGMIT---ESHVSNLSKLKYMDFSFNSLALNFSFGWL  357 (637)
Q Consensus       285 ~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  357 (637)
                      ..+.|+++...+|++.+.    ....+...+.|+.+.+..|.+.....   ...+..+++|+.||+.+|-++.....   
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~---  231 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV---  231 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH---
Confidence            356678888887777653    33456667788888888887753322   23567778888888887777633221   


Q ss_pred             CCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhh----cCCCccEEECCCCcCCCcc----cccc
Q 042944          358 PPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWD----LSPNLYYLNLSHNHLEGTV----LDLS  429 (637)
Q Consensus       358 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~----~~~~L~~L~l~~n~i~~~~----~~~~  429 (637)
                                       .+...+...++|+.|++++|.+...+...+..    ..|+|+.+.+.+|.|+...    ....
T Consensus       232 -----------------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~  294 (382)
T KOG1909|consen  232 -----------------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACM  294 (382)
T ss_pred             -----------------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHH
Confidence                             22234455566666666666666655543332    2356677777777665321    1222


Q ss_pred             cCCCCCCeEeCCCCcC
Q 042944          430 LNYAGYPGIDLSSNDF  445 (637)
Q Consensus       430 ~~~~~L~~L~l~~n~~  445 (637)
                      ...|.|..|++++|.+
T Consensus       295 ~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  295 AEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcchhhHHhcCCcccc
Confidence            2344555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.21  E-value=8.2e-12  Score=110.10  Aligned_cols=104  Identities=29%  Similarity=0.404  Sum_probs=22.0

Q ss_pred             CCcEEEcCCCCCCCCCcccccccC-CCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCC
Q 042944           89 SLRDLYLASSTLLSINRPSLSSMN-SSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTAL  167 (637)
Q Consensus        89 ~L~~L~l~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L  167 (637)
                      ++++|+|+++.|+.+     +.++ .+.+|+.|++++|.|+...  .+..+ ++|++|++++|.++ .++......+++|
T Consensus        20 ~~~~L~L~~n~I~~I-----e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L-~~L~~L~L~~N~I~-~i~~~l~~~lp~L   90 (175)
T PF14580_consen   20 KLRELNLRGNQISTI-----ENLGATLDKLEVLDLSNNQITKLE--GLPGL-PRLKTLDLSNNRIS-SISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T--T-----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred             ccccccccccccccc-----cchhhhhcCCCEEECCCCCCcccc--CccCh-hhhhhcccCCCCCC-ccccchHHhCCcC
Confidence            444555555544443     2232 2344455555555444322  13333 44455555555444 4432111234444


Q ss_pred             CEEEcCCCcccchh--hhcCCCCCCcEEEcCCCcCC
Q 042944          168 QHLNLSLNQISAIS--KSFGNMCGLKTLHLFDNNLT  201 (637)
Q Consensus       168 ~~L~L~~n~l~~l~--~~~~~l~~L~~L~l~~n~i~  201 (637)
                      ++|++++|+|.++.  ..+..+++|++|++.+|+++
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            45555444444421  23334444444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=2.7e-11  Score=106.80  Aligned_cols=124  Identities=24%  Similarity=0.323  Sum_probs=49.4

Q ss_pred             CCccEEeCCCCCCcccCchhhh-ccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh
Q 042944          479 EYFSYLDVSDNLLSGELPDCLL-RWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD  557 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~  557 (637)
                      ..+++|++++|.++. + +.+. .+.+|+.|++++|.|+         .+ +.+..++.|++|++++|.++ .++..+..
T Consensus        19 ~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~---------~l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~   85 (175)
T PF14580_consen   19 VKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT---------KL-EGLPGLPRLKTLDLSNNRIS-SISEGLDK   85 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S------------TT----TT--EEE--SS----S-CHHHHH
T ss_pred             ccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc---------cc-cCccChhhhhhcccCCCCCC-ccccchHH
Confidence            455667777777663 2 2344 4678888888888887         33 24667888888888888887 67655554


Q ss_pred             cCCCCcEEeccCcccccc-CCccccCCCCCcEeeCCCCccccc---ccccccccccceeecc
Q 042944          558 TLPKLAILSLRSNQFHGS-IPRNLCRLSKIQLLDFSLNSISGA---IPKCINNLTAMVEKAS  615 (637)
Q Consensus       558 ~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~ls~n~l~~~---~p~~l~~l~~L~~l~l  615 (637)
                      .+|+|++|++++|+|... .-..+..+++|+.|++.+||++..   -...+..+|+|+.||-
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            588888888888888642 124566788888888888888743   1225567888888775

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.15  E-value=1e-12  Score=130.44  Aligned_cols=170  Identities=25%  Similarity=0.364  Sum_probs=90.6

Q ss_pred             cEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccc
Q 042944          387 YFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKF  466 (637)
Q Consensus       387 ~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l  466 (637)
                      ...|++.|++.. .|..++.+ ..|+.+.+..|.+. .++..+..+..|+.+|++.|++                     
T Consensus        78 ~~aDlsrNR~~e-lp~~~~~f-~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nql---------------------  133 (722)
T KOG0532|consen   78 VFADLSRNRFSE-LPEEACAF-VSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQL---------------------  133 (722)
T ss_pred             hhhhcccccccc-CchHHHHH-HHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchh---------------------
Confidence            355666666654 33333332 45566666666554 3444455555555555555554                     


Q ss_pred             cCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCc
Q 042944          467 SGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNK  546 (637)
Q Consensus       467 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~  546 (637)
                      ......+|.   --|+.|.+++|+++ .+|+.++..+.|..|+.+.|.+.         .+|..+.++.+|+.|.++.|+
T Consensus       134 S~lp~~lC~---lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~---------slpsql~~l~slr~l~vrRn~  200 (722)
T KOG0532|consen  134 SHLPDGLCD---LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ---------SLPSQLGYLTSLRDLNVRRNH  200 (722)
T ss_pred             hcCChhhhc---CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh---------hchHHhhhHHHHHHHHHhhhh
Confidence            433333333   23455555555555 45555555555555555555555         555555555555555555555


Q ss_pred             ccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944          547 FSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS  597 (637)
Q Consensus       547 l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~  597 (637)
                      +. .+|..+.  .-.|.+||+|.|+++ .+|-.|.+++.|++|-|.+|+++
T Consensus       201 l~-~lp~El~--~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  201 LE-DLPEELC--SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hh-hCCHHHh--CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            54 5555554  233455555555555 55555555555555555555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.14  E-value=1.4e-10  Score=120.11  Aligned_cols=195  Identities=34%  Similarity=0.482  Sum_probs=128.7

Q ss_pred             EEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCC-CCCEEEcCCCcccchhhhcCCCCCCcEEEcCC
Q 042944          119 LLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMT-ALQHLNLSLNQISAISKSFGNMCGLKTLHLFD  197 (637)
Q Consensus       119 ~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~  197 (637)
                      .+++..+.+... ...+... +.++.|++.++.++ .++. ...... +|++|++++|.+..+|..++.+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~-~~l~~L~l~~n~i~-~i~~-~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLEL-TNLTSLDLDNNNIT-DIPP-LIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccC-chhhhcc-cceeEEecCCcccc-cCcc-ccccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence            577777766322 2224444 67788888888877 7776 444453 78888888888888777777788888888888


Q ss_pred             CcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCC
Q 042944          198 NNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLW  277 (637)
Q Consensus       198 n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~  277 (637)
                      |++. ..+...+...     .|+.|++++|.+...++.......|+++.+++|.+. ..+..+.++.++..+.+.+|++.
T Consensus       173 N~l~-~l~~~~~~~~-----~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~  245 (394)
T COG4886         173 NDLS-DLPKLLSNLS-----NLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE  245 (394)
T ss_pred             chhh-hhhhhhhhhh-----hhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee
Confidence            8776 4444444555     777888888877755554445556777777777433 34455666777777777777765


Q ss_pred             CCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCc
Q 042944          278 GSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM  326 (637)
Q Consensus       278 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  326 (637)
                      .....+..++.++.|++++|.+.....  +....+++.|+++++.+...
T Consensus       246 ~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         246 DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             eccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence            444444556667777777777764433  66667777777777766554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=1.1e-10  Score=120.87  Aligned_cols=200  Identities=31%  Similarity=0.430  Sum_probs=161.1

Q ss_pred             EEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcC-CCcEEECCCCCCCCCCCchhccCCCCCCEE
Q 042944           92 DLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISS-NLLALDLNSNQLAGPIPDYAFSNMTALQHL  170 (637)
Q Consensus        92 ~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~-~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L  170 (637)
                      .++++.+.+....    ..+..++.++.|++.+|.++...+  ...... +|+.|++++|.+. .++. .+..+++|+.|
T Consensus        97 ~l~~~~~~~~~~~----~~~~~~~~l~~L~l~~n~i~~i~~--~~~~~~~nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L  168 (394)
T COG4886          97 SLDLNLNRLRSNI----SELLELTNLTSLDLDNNNITDIPP--LIGLLKSNLKELDLSDNKIE-SLPS-PLRNLPNLKNL  168 (394)
T ss_pred             eeeccccccccCc----hhhhcccceeEEecCCcccccCcc--ccccchhhcccccccccchh-hhhh-hhhcccccccc
Confidence            5788888773332    445556889999999999986554  233324 8999999999998 8864 58899999999


Q ss_pred             EcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCC
Q 042944          171 NLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDN  250 (637)
Q Consensus       171 ~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n  250 (637)
                      ++++|++.++|......++|+.|++++|.+. ..|.......     .|+++.+++|.+...+..+..+..+..+.+.+|
T Consensus       169 ~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~-----~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n  242 (394)
T COG4886         169 DLSFNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS-----ALEELDLSNNSIIELLSSLSNLKNLSGLELSNN  242 (394)
T ss_pred             ccCCchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhh-----hhhhhhhcCCcceecchhhhhcccccccccCCc
Confidence            9999999999887779999999999999998 5565544454     799999999976657777888889999999999


Q ss_pred             cCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhh
Q 042944          251 KLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGL  307 (637)
Q Consensus       251 ~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l  307 (637)
                      ++.. .+..+..++.++.|++++|.+..... +....+++.|+++++.+....+...
T Consensus       243 ~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         243 KLED-LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             eeee-ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhh
Confidence            8763 36778888999999999999986655 6679999999999999886655443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.07  E-value=1.7e-10  Score=127.36  Aligned_cols=132  Identities=26%  Similarity=0.329  Sum_probs=97.0

Q ss_pred             cCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCC--CCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhcc
Q 042944           85 TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCG--LSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFS  162 (637)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~--i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~  162 (637)
                      ......+...+-++.+..+.     .-..++.|++|-+..|.  +. ..+..++..++.|++|||++|.-.+.+|. .++
T Consensus       520 ~~~~~~rr~s~~~~~~~~~~-----~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~  592 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEHIA-----GSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIG  592 (889)
T ss_pred             cchhheeEEEEeccchhhcc-----CCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCCh-HHh
Confidence            34456788888777776652     23344678888888885  33 33444566568899999998754457888 788


Q ss_pred             CCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCC
Q 042944          163 NMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK  228 (637)
Q Consensus       163 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~  228 (637)
                      .+.+||+|++++..++.+|..++++..|.+|++..+......+.....+.     +|++|.+....
T Consensus       593 ~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~-----~Lr~L~l~~s~  653 (889)
T KOG4658|consen  593 ELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQ-----SLRVLRLPRSA  653 (889)
T ss_pred             hhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcc-----cccEEEeeccc
Confidence            88888999998888888888888888888888887765545566666677     88888876654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.06  E-value=3.7e-11  Score=110.11  Aligned_cols=127  Identities=25%  Similarity=0.225  Sum_probs=55.9

Q ss_pred             CccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCC
Q 042944          241 SLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFG  320 (637)
Q Consensus       241 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  320 (637)
                      .|+++|+++|.|+ ...+...-.+.++.|+++.|.+. ....+..+++|++||+++|.++. ...+-..+.+++.|.+++
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhh
Confidence            4444455554444 23333444444555555555444 22223344555555555554441 122222344455555555


Q ss_pred             CcCCCccchhhhcCCCCCcEEEccCCcccccc-cCCCCCCCceeEEeccCCcCC
Q 042944          321 NSLEGMITESHVSNLSKLKYMDFSFNSLALNF-SFGWLPPFQLESIGLLHCKLG  373 (637)
Q Consensus       321 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~~~~~  373 (637)
                      |.+.+.   ..++.+.+|..||+++|+|.... ...+++++-|+.+.+.+|.+.
T Consensus       362 N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  362 NKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            544432   13444445555555555543211 223444455555555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.98  E-value=6.8e-11  Score=122.49  Aligned_cols=244  Identities=32%  Similarity=0.356  Sum_probs=133.9

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCC
Q 042944           86 SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMT  165 (637)
Q Consensus        86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~  165 (637)
                      .+..++.+++..+.+....    ..+..+++|+.|++.+|.|...... +..+ ++|++|++++|.|+ .+..  +..++
T Consensus        70 ~l~~l~~l~l~~n~i~~~~----~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~-~~L~~L~ls~N~I~-~i~~--l~~l~  140 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKIL----NHLSKLKSLEALDLYDNKIEKIENL-LSSL-VNLQVLDLSFNKIT-KLEG--LSTLT  140 (414)
T ss_pred             HhHhHHhhccchhhhhhhh----cccccccceeeeeccccchhhcccc-hhhh-hcchheeccccccc-cccc--hhhcc
Confidence            3455555556666666531    3355567777777777776643321 2223 77777777777776 6655  66666


Q ss_pred             CCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEE
Q 042944          166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQEL  245 (637)
Q Consensus       166 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  245 (637)
                      .|+.|++++|.|.++ ..+..+++|+.+++++|.+....+.....+.     +++.+++.+|.+. .+..+..+..+..+
T Consensus       141 ~L~~L~l~~N~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~-----~l~~l~l~~n~i~-~i~~~~~~~~l~~~  213 (414)
T KOG0531|consen  141 LLKELNLSGNLISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELI-----SLEELDLGGNSIR-EIEGLDLLKKLVLL  213 (414)
T ss_pred             chhhheeccCcchhc-cCCccchhhhcccCCcchhhhhhhhhhhhcc-----chHHHhccCCchh-cccchHHHHHHHHh
Confidence            777777777777776 3455577777777777776633331034444     6777777777666 33334444444444


Q ss_pred             EccCCcCCCCCCCcCCCCCC--CcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcC
Q 042944          246 HLFDNKLDGSFPEKFRKPSP--LVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL  323 (637)
Q Consensus       246 ~l~~n~i~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  323 (637)
                      ++..|.++...  .+..+..  |+.+++++|.+......+..+..+..+++.++.+...  ..+...+.+..+....+.+
T Consensus       214 ~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~  289 (414)
T KOG0531|consen  214 SLLDNKISKLE--GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKL  289 (414)
T ss_pred             hcccccceecc--CcccchhHHHHHHhcccCccccccccccccccccccchhhcccccc--ccccccchHHHhccCcchh
Confidence            66666655321  1222222  6666666666654334444466666666666665532  1233344444555555544


Q ss_pred             CCc---cchhhhcCCCCCcEEEccCCccc
Q 042944          324 EGM---ITESHVSNLSKLKYMDFSFNSLA  349 (637)
Q Consensus       324 ~~~---~~~~~~~~l~~L~~L~l~~n~~~  349 (637)
                      ...   .........+.++...+..+++.
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (414)
T KOG0531|consen  290 ALSEAISQEYITSAAPTLVTLTLELNPIR  318 (414)
T ss_pred             cchhhhhccccccccccccccccccCccc
Confidence            311   11111334455555555555554

>PLN03150 hypothetical protein; Provisional

Probab=98.93  E-value=1.6e-09  Score=117.40  Aligned_cols=113  Identities=31%  Similarity=0.536  Sum_probs=95.5

Q ss_pred             CccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcC
Q 042944          480 YFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTL  559 (637)
Q Consensus       480 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l  559 (637)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.        +.+|..+..+++|+.|++++|.+++.+|..+. .+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~--------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~-~L  489 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR--------GNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QL  489 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc--------CcCChHHhCCCCCCEEECCCCCCCCCCchHHh-cC
Confidence            4788999999999889999999999999999999877        46777888899999999999999888888887 69


Q ss_pred             CCCcEEeccCccccccCCccccCC-CCCcEeeCCCCccccccc
Q 042944          560 PKLAILSLRSNQFHGSIPRNLCRL-SKIQLLDFSLNSISGAIP  601 (637)
Q Consensus       560 ~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~ls~n~l~~~~p  601 (637)
                      ++|+.|+|++|++++.+|..+... .++..+++++|+.....|
T Consensus       490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999999999998888887664 467788898887665444

>PLN03150 hypothetical protein; Provisional

Probab=98.91  E-value=3.2e-09  Score=115.12  Aligned_cols=106  Identities=29%  Similarity=0.534  Sum_probs=59.5

Q ss_pred             CcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCC
Q 042944          505 LAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLS  584 (637)
Q Consensus       505 L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~  584 (637)
                      ++.|+|++|.+.        +.+|..+..+++|+.|++++|.+++.+|..+. .+++|+.|+|++|++++.+|..+..++
T Consensus       420 v~~L~L~~n~L~--------g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~  490 (623)
T PLN03150        420 IDGLGLDNQGLR--------GFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLT  490 (623)
T ss_pred             EEEEECCCCCcc--------ccCCHHHhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCC
Confidence            455555555554        24455555556666666666666555555554 456666666666666555555556666


Q ss_pred             CCcEeeCCCCccccccccccccc-ccceeeccCCCe
Q 042944          585 KIQLLDFSLNSISGAIPKCINNL-TAMVEKASSNST  619 (637)
Q Consensus       585 ~L~~L~ls~n~l~~~~p~~l~~l-~~L~~l~l~~n~  619 (637)
                      +|+.|++++|.+.+.+|..+... .++..+++++|.
T Consensus       491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            66666666666665555555432 344455555553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.90  E-value=3.9e-10  Score=116.84  Aligned_cols=222  Identities=27%  Similarity=0.345  Sum_probs=169.0

Q ss_pred             hcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944           84 ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN  163 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~  163 (637)
                      +..+++++.|++.+|.+..+.    ..+..+++|++|++++|.|++..+  +..+ +.|+.|++++|.+. .+..  +..
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~----~~l~~~~~L~~L~ls~N~I~~i~~--l~~l-~~L~~L~l~~N~i~-~~~~--~~~  160 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIE----NLLSSLVNLQVLDLSFNKITKLEG--LSTL-TLLKELNLSGNLIS-DISG--LES  160 (414)
T ss_pred             cccccceeeeeccccchhhcc----cchhhhhcchheeccccccccccc--hhhc-cchhhheeccCcch-hccC--Ccc
Confidence            678899999999999999883    227778999999999999986654  5555 77999999999998 8876  777


Q ss_pred             CCCCCEEEcCCCcccchhhh-cCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCC-
Q 042944          164 MTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSS-  241 (637)
Q Consensus       164 l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-  241 (637)
                      ++.|+.+++++|++..+... ...+.+++.+.+.+|.+.  ....+..+.     .+..+++..|.+. ....+..... 
T Consensus       161 l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~--~i~~~~~~~-----~l~~~~l~~n~i~-~~~~l~~~~~~  232 (414)
T KOG0531|consen  161 LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR--EIEGLDLLK-----KLVLLSLLDNKIS-KLEGLNELVML  232 (414)
T ss_pred             chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh--cccchHHHH-----HHHHhhcccccce-eccCcccchhH
Confidence            99999999999999998553 588999999999999985  344444444     6666788888887 3333444444 


Q ss_pred             -ccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCC---Chh-hhcCCCCCCEE
Q 042944          242 -LQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGT---VSE-GLGRLSKLEFL  316 (637)
Q Consensus       242 -L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~-~l~~l~~L~~L  316 (637)
                       |+.+++.+|.+.. .+..+..+..+..+++..+++. ........+.+..+....+.+...   ... .....+.++.+
T Consensus       233 ~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (414)
T KOG0531|consen  233 HLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRIS-NLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL  310 (414)
T ss_pred             HHHHHhcccCcccc-ccccccccccccccchhhcccc-ccccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence             8999999999873 3366778889999999999886 333444566677777777765521   111 14456778888


Q ss_pred             ecCCCcCCC
Q 042944          317 DLFGNSLEG  325 (637)
Q Consensus       317 ~l~~n~~~~  325 (637)
                      .+..+....
T Consensus       311 ~~~~~~~~~  319 (414)
T KOG0531|consen  311 TLELNPIRK  319 (414)
T ss_pred             ccccCcccc
Confidence            888887654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.88  E-value=4.9e-11  Score=121.77  Aligned_cols=176  Identities=22%  Similarity=0.253  Sum_probs=125.1

Q ss_pred             cccCCCCCCeEeCCCCcCcCCCCCC--CCCccEEEccccccc----------CcccccccccCCCccEEeCCCCCCcccC
Q 042944          428 LSLNYAGYPGIDLSSNDFEGPVPPV--PGNVTSLNLSNNKFS----------GPISSLCSISGEYFSYLDVSDNLLSGEL  495 (637)
Q Consensus       428 ~~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~L~~n~l~----------~~~~~~~~~~~~~L~~L~l~~n~l~~~~  495 (637)
                      .+..+.+|+.|.+.+|.+.......  -..|++|... |.+.          +.+.....+  -.|...+.++|.+. .+
T Consensus       104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~W--n~L~~a~fsyN~L~-~m  179 (1096)
T KOG1859|consen  104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVW--NKLATASFSYNRLV-LM  179 (1096)
T ss_pred             eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhh--hhHhhhhcchhhHH-hH
Confidence            3455667777777777665422211  1234444222 2211          111112222  57788899999998 67


Q ss_pred             chhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccccc
Q 042944          496 PDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS  575 (637)
Q Consensus       496 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~  575 (637)
                      ..++.-++.|+.|+|++|++++         . ..+..|+.|++|||++|.+. .+|..-...+ +|..|+|++|.++ .
T Consensus       180 D~SLqll~ale~LnLshNk~~~---------v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~-t  246 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTK---------V-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALT-T  246 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhh---------h-HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHH-h
Confidence            7889999999999999999883         2 26788999999999999997 7775433233 4999999999998 4


Q ss_pred             CCccccCCCCCcEeeCCCCcccccc-cccccccccceeeccCCCeeE
Q 042944          576 IPRNLCRLSKIQLLDFSLNSISGAI-PKCINNLTAMVEKASSNSTIT  621 (637)
Q Consensus       576 ~~~~l~~l~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~l~l~~n~l~  621 (637)
                      + .++.++.+|+.||+++|-+.+-- -+.+..+.+|+.|+|.||++-
T Consensus       247 L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  247 L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            4 47899999999999999776421 124678899999999999984

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.8e-09  Score=78.18  Aligned_cols=61  Identities=26%  Similarity=0.429  Sum_probs=37.0

Q ss_pred             CCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCee
Q 042944          560 PKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTI  620 (637)
Q Consensus       560 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l  620 (637)
                      |+|++|++++|+++...+..|..+++|++|++++|.+....|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3566666666666643445556666666666666666655555666666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=3e-09  Score=76.96  Aligned_cols=61  Identities=30%  Similarity=0.476  Sum_probs=43.1

Q ss_pred             CCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcc
Q 042944          535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSI  596 (637)
Q Consensus       535 ~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l  596 (637)
                      |+|++|++++|+++ .+|...++.+++|++|++++|.+++..|..|..+++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            35677777777776 66666665677777777777777765666777777777777777764

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.77  E-value=1e-08  Score=113.55  Aligned_cols=103  Identities=33%  Similarity=0.406  Sum_probs=52.0

Q ss_pred             CCCcEEECCCCC--CCCCCCchhccCCCCCCEEEcCCC-cccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCC
Q 042944          140 SNLLALDLNSNQ--LAGPIPDYAFSNMTALQHLNLSLN-QISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSK  216 (637)
Q Consensus       140 ~~L~~L~L~~n~--l~~~l~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~  216 (637)
                      +.|++|-+.+|.  +. .++...|..++.|++||+++| .+..+|..++.+-+||+|+++++.+. .+|..+.++.    
T Consensus       545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk----  618 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK----  618 (889)
T ss_pred             CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH----
Confidence            345555555553  33 444434555555555555544 33445555555555555555555554 5555555555    


Q ss_pred             CcccEEEcCCCCCCCCcCCc-ccCCCccEEEccC
Q 042944          217 NSLEILKLGGNKLTGSLPDI-TEFSSLQELHLFD  249 (637)
Q Consensus       217 ~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~  249 (637)
                       +|.+|++..+.....++.+ ..+++|++|.+..
T Consensus       619 -~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  619 -KLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             -hhheeccccccccccccchhhhcccccEEEeec
Confidence             5555555554433333322 2255555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=6.4e-10  Score=102.09  Aligned_cols=85  Identities=27%  Similarity=0.308  Sum_probs=50.6

Q ss_pred             CccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCC-cccc--hhhhcCCCCCCcE
Q 042944          116 SLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLN-QISA--ISKSFGNMCGLKT  192 (637)
Q Consensus       116 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n-~l~~--l~~~~~~l~~L~~  192 (637)
                      .|++|||+...|+......+..-|.+|+.|.+.++.+.+.+-. .+++-.+|+.|+++.+ .++.  +.-.+..|+.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            4666666666666544444444446666666666666644444 5566666666666664 3443  2234566666666


Q ss_pred             EEcCCCcCC
Q 042944          193 LHLFDNNLT  201 (637)
Q Consensus       193 L~l~~n~i~  201 (637)
                      |++++|...
T Consensus       265 LNlsWc~l~  273 (419)
T KOG2120|consen  265 LNLSWCFLF  273 (419)
T ss_pred             cCchHhhcc
Confidence            666666554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.69  E-value=1.6e-09  Score=104.32  Aligned_cols=304  Identities=20%  Similarity=0.120  Sum_probs=159.6

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCC-CCCchhhhHHHhhcCCCcEEECCCCC-CCCCCCchhccCCC
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSC-GLSNSAYHWLFKISSNLLALDLNSNQ-LAGPIPDYAFSNMT  165 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~~~~L~~L~L~~n~-l~~~l~~~~~~~l~  165 (637)
                      ..|+.|++.++.-....+ .-.....++++++|++.++ ++++.....+.+.+++|++|++..|. ++...-.+....++
T Consensus       138 g~lk~LSlrG~r~v~~ss-lrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~  216 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSS-LRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR  216 (483)
T ss_pred             cccccccccccccCCcch-hhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence            468888888875544422 0123356788888888888 46666666788888889999988853 44111122335788


Q ss_pred             CCCEEEcCCCc-ccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC---CcccC
Q 042944          166 ALQHLNLSLNQ-ISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP---DITEF  239 (637)
Q Consensus       166 ~L~~L~L~~n~-l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~---~~~~~  239 (637)
                      +|++|++++|. |+.  +...+.++..++.+...+|.-  ...+.+.... ...+.+..+++..|.......   .-..+
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~-~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE--LELEALLKAA-AYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc--ccHHHHHHHh-ccChHhhccchhhhccccchHHHHHhhhh
Confidence            88888888873 333  445567777788887777642  2233333322 233356666665553221111   12345


Q ss_pred             CCccEEEccCCcC-CCCCCCc-CCCCCCCcEEEcCCCCCCC-CCCC--CCCCCCCCEEEccCCcCCC--CChhhhcCCCC
Q 042944          240 SSLQELHLFDNKL-DGSFPEK-FRKPSPLVILNLDGNQLWG-SLPD--LSVFPFLTRLDVSDSRLNG--TVSEGLGRLSK  312 (637)
Q Consensus       240 ~~L~~L~l~~n~i-~~~~~~~-l~~l~~L~~L~l~~~~~~~-~~~~--~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~  312 (637)
                      ..|+.|..+++.- ++..... -.+..+|+.+.+++|+.-. .-..  ...+++|+.+++.++....  .+...-.+++.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~  373 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR  373 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence            5677777766542 2211111 2345667777776665311 1111  1125666666666654321  12222335556


Q ss_pred             CCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCC-CccccccCCCCccEEEe
Q 042944          313 LEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGP-HFPKWLQSQKNYYFLDI  391 (637)
Q Consensus       313 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l  391 (637)
                      |+.+.+++|..........+                    .........++.+.+++|..+. ...+.+..+++|+.+++
T Consensus       374 lr~lslshce~itD~gi~~l--------------------~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l  433 (483)
T KOG4341|consen  374 LRVLSLSHCELITDEGIRHL--------------------SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL  433 (483)
T ss_pred             hccCChhhhhhhhhhhhhhh--------------------hhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence            66666665543221100001                    0111223345555555554322 23344566677777777


Q ss_pred             eCCC-CCCccchhhhhcCCCccEEE
Q 042944          392 SDTE-ISDAVPSWFWDLSPNLYYLN  415 (637)
Q Consensus       392 ~~n~-i~~~~~~~~~~~~~~L~~L~  415 (637)
                      -+++ ++......+...+|+++..-
T Consensus       434 ~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  434 IDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             echhhhhhhhhHHHHhhCccceehh
Confidence            6664 34444445555555555443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=2.7e-09  Score=98.10  Aligned_cols=226  Identities=21%  Similarity=0.170  Sum_probs=107.2

Q ss_pred             CccEEECCCCCCCchhhhHHHhhc-CCCcEEECCCCCCCCC-CCchhccCC-CCCCEEEcCCCcccc--hhhhcCCCCCC
Q 042944          116 SLTLLDLSSCGLSNSAYHWLFKIS-SNLLALDLNSNQLAGP-IPDYAFSNM-TALQHLNLSLNQISA--ISKSFGNMCGL  190 (637)
Q Consensus       116 ~L~~L~L~~n~i~~~~~~~~~~~~-~~L~~L~L~~n~l~~~-l~~~~~~~l-~~L~~L~L~~n~l~~--l~~~~~~l~~L  190 (637)
                      ..+.+|+.+-.|....   +.++. ....++.+....+... +.+ .+... ..|++|||+...|+.  +-..+..|.+|
T Consensus       137 lW~~lDl~~r~i~p~~---l~~l~~rgV~v~Rlar~~~~~prlae-~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kL  212 (419)
T KOG2120|consen  137 LWQTLDLTGRNIHPDV---LGRLLSRGVIVFRLARSFMDQPRLAE-HFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKL  212 (419)
T ss_pred             ceeeeccCCCccChhH---HHHHHhCCeEEEEcchhhhcCchhhh-hhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhh
Confidence            4556666665554222   22221 3455666654433211 111 11111 246777777666655  44455666677


Q ss_pred             cEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCC-CCCCcC--CcccCCCccEEEccCCcCCCCCCCcCCCCCCCc
Q 042944          191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK-LTGSLP--DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLV  267 (637)
Q Consensus       191 ~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~-~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~  267 (637)
                      +.|.+.++++.+.....+++-.     +|+.|+++.+. ++....  -+..++.|.+|++++|.........        
T Consensus       213 k~lSlEg~~LdD~I~~~iAkN~-----~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv--------  279 (419)
T KOG2120|consen  213 KNLSLEGLRLDDPIVNTIAKNS-----NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV--------  279 (419)
T ss_pred             hhccccccccCcHHHHHHhccc-----cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH--------
Confidence            7777777776666666666655     66666666543 221000  1334445555555555433111100        


Q ss_pred             EEEcCCCCCCCCCCCCCC-CCCCCEEEccCCcCC---CCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEc
Q 042944          268 ILNLDGNQLWGSLPDLSV-FPFLTRLDVSDSRLN---GTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDF  343 (637)
Q Consensus       268 ~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  343 (637)
                                    .+.+ -++|+.|+++|+.-.   ..+......+|+|..||+++|..........+..++.|++|.+
T Consensus       280 --------------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  280 --------------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             --------------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence                          0111 344555555554211   1122223455666666666654322222234455566666666


Q ss_pred             cCCccc-ccccCCCCCCCceeEEeccCCcC
Q 042944          344 SFNSLA-LNFSFGWLPPFQLESIGLLHCKL  372 (637)
Q Consensus       344 ~~n~~~-~~~~~~~~~~~~L~~L~l~~~~~  372 (637)
                      +.|... -.....+...++|.+|++.+|--
T Consensus       346 sRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  346 SRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             hhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            665432 12222344556667777666643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.53  E-value=2.8e-08  Score=90.33  Aligned_cols=239  Identities=17%  Similarity=0.173  Sum_probs=152.8

Q ss_pred             cCCCCccEEEeeCCCCCCccchhhhhcC---CCccEEECCCCcCCC-----------cccccccCCCCCCeEeCCCCcCc
Q 042944          381 QSQKNYYFLDISDTEISDAVPSWFWDLS---PNLYYLNLSHNHLEG-----------TVLDLSLNYAGYPGIDLSSNDFE  446 (637)
Q Consensus       381 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~---~~L~~L~l~~n~i~~-----------~~~~~~~~~~~L~~L~l~~n~~~  446 (637)
                      ..+..++.+++|+|.|......+++...   .+|+..+++.- +++           .....+..||.|+.+++|.|.+.
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            3466777777777777776666665543   34555555542 121           22244557888888888888877


Q ss_pred             CCCCCC-------CCCccEEEcccccccCcccccc------------cccCCCccEEeCCCCCCcccC----chhhhccC
Q 042944          447 GPVPPV-------PGNVTSLNLSNNKFSGPISSLC------------SISGEYFSYLDVSDNLLSGEL----PDCLLRWQ  503 (637)
Q Consensus       447 ~~~~~~-------~~~L~~L~L~~n~l~~~~~~~~------------~~~~~~L~~L~l~~n~l~~~~----~~~l~~l~  503 (637)
                      ...|..       -..|..|.+++|.+....-.-.            ....|.|+..+...|++..-.    ...+..-.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence            555543       3567888888887643211110            112288999999999886321    12344446


Q ss_pred             CCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhh---hcCCCCcEEeccCccccccCCcc-
Q 042944          504 ALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIG---DTLPKLAILSLRSNQFHGSIPRN-  579 (637)
Q Consensus       504 ~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~---~~l~~L~~L~L~~n~~~~~~~~~-  579 (637)
                      .|+.+.+..|.|......   ..+-..+.++++|+.||+..|-++-.....+.   ...+.|++|.+..|-++..-... 
T Consensus       186 ~lk~vki~qNgIrpegv~---~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v  262 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVT---MLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV  262 (388)
T ss_pred             CceeEEeeecCcCcchhH---HHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence            899999999988733211   12223467889999999999988733332222   13566899999999887442211 


Q ss_pred             ---c--cCCCCCcEeeCCCCccccccccc------c-cccccceeeccCCCeeEEE
Q 042944          580 ---L--CRLSKIQLLDFSLNSISGAIPKC------I-NNLTAMVEKASSNSTITHI  623 (637)
Q Consensus       580 ---l--~~l~~L~~L~ls~n~l~~~~p~~------l-~~l~~L~~l~l~~n~l~~~  623 (637)
                         |  ...++|+.|-..+|.+.+-+...      . ..+|-|..+-++||+|...
T Consensus       263 ~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         263 LRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             HHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence               1  12588899999999776533222      1 3688899999999999644

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=3.6e-08  Score=90.76  Aligned_cols=225  Identities=16%  Similarity=0.121  Sum_probs=116.5

Q ss_pred             CCccEEEeeCCCCCCccch-hhhhcCCCccEEECCCCcCCC--cccccccCCCCCCeEeCCCCcCcCCCCC---CCCCcc
Q 042944          384 KNYYFLDISDTEISDAVPS-WFWDLSPNLYYLNLSHNHLEG--TVLDLSLNYAGYPGIDLSSNDFEGPVPP---VPGNVT  457 (637)
Q Consensus       384 ~~L~~L~l~~n~i~~~~~~-~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~L~  457 (637)
                      ..++.+.+.++.|...+.. .+....+.++++|+.+|.|++  .+...+.++|.|+.|+++.|++...+..   ...+|+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~  124 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR  124 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence            3444555555555544332 233334566666666666654  2333445666666666666665433322   234666


Q ss_pred             EEEcccccccCcccccccccCCCccEEeCCCCCCcc--cCchhhhcc-CCCcEEeccCccCCCCccccccccCCccccCC
Q 042944          458 SLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSG--ELPDCLLRW-QALAVLNLANNNFSGNFLTFFVGEIPPSLKKC  534 (637)
Q Consensus       458 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l  534 (637)
                      .|-|.+..+............|.++.|.+|.|.+..  ...++.... +.++.|+...|...-      -..+..-...+
T Consensus       125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~------w~~~~~l~r~F  198 (418)
T KOG2982|consen  125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL------WLNKNKLSRIF  198 (418)
T ss_pred             EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH------HHHHHhHHhhc
Confidence            666666554332222222222556666666663221  111222222 244444444443210      00011111235


Q ss_pred             CCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccccc-CCccccCCCCCcEeeCCCCcccccccc------ccccc
Q 042944          535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS-IPRNLCRLSKIQLLDFSLNSISGAIPK------CINNL  607 (637)
Q Consensus       535 ~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~ls~n~l~~~~p~------~l~~l  607 (637)
                      +++..+.+..|.+++.-...-++.+|.+..|+|+.|+|..- ..+.+..+++|..|.++++++.+.+-.      -++.+
T Consensus       199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL  278 (418)
T KOG2982|consen  199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL  278 (418)
T ss_pred             ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence            67777888888776444444445677788888888887621 124566778888888888887654322      24566


Q ss_pred             ccceeec
Q 042944          608 TAMVEKA  614 (637)
Q Consensus       608 ~~L~~l~  614 (637)
                      +.++.|+
T Consensus       279 ~~v~vLN  285 (418)
T KOG2982|consen  279 TKVQVLN  285 (418)
T ss_pred             cceEEec
Confidence            6666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=2.7e-08  Score=91.54  Aligned_cols=208  Identities=23%  Similarity=0.246  Sum_probs=113.2

Q ss_pred             ccEEECCCCCCCchhh-hHHHhhcCCCcEEECCCCCCCC--CCCchhccCCCCCCEEEcCCCcccchhhhc-CCCCCCcE
Q 042944          117 LTLLDLSSCGLSNSAY-HWLFKISSNLLALDLNSNQLAG--PIPDYAFSNMTALQHLNLSLNQISAISKSF-GNMCGLKT  192 (637)
Q Consensus       117 L~~L~L~~n~i~~~~~-~~~~~~~~~L~~L~L~~n~l~~--~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~-~~l~~L~~  192 (637)
                      +..|-+.++.|..... ..+...++.++.|||.+|.|++  ++.. .+.++|+|+.|+++.|.+...-..+ ....+|++
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            4445555555554332 2344444667777777776651  1222 3456677777777776665522222 24556666


Q ss_pred             EEcCCCcCCCCch-hHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEc
Q 042944          193 LHLFDNNLTGQLP-ELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNL  271 (637)
Q Consensus       193 L~l~~n~i~~~~~-~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l  271 (637)
                      |-+.+..+..... ..+..++     +++.|+++.|.+.             .+.+.++.+...       -+.+.++..
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP-----~vtelHmS~N~~r-------------q~n~Dd~c~e~~-------s~~v~tlh~  180 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLP-----KVTELHMSDNSLR-------------QLNLDDNCIEDW-------STEVLTLHQ  180 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcch-----hhhhhhhccchhh-------------hhcccccccccc-------chhhhhhhc
Confidence            6666665543222 2223333     5555555554322             112222222211       123344444


Q ss_pred             CCCCCCC--CCCCCCC-CCCCCEEEccCCcCCCC-ChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCc
Q 042944          272 DGNQLWG--SLPDLSV-FPFLTRLDVSDSRLNGT-VSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNS  347 (637)
Q Consensus       272 ~~~~~~~--~~~~~~~-~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  347 (637)
                      ..|....  ..-.+.. +|++..+-+..|++.+. ....+..+|.+.-|+++.+.+.+....+.+.++++|..|.++.++
T Consensus       181 ~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~P  260 (418)
T KOG2982|consen  181 LPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENP  260 (418)
T ss_pred             CCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCc
Confidence            4443211  1111222 67788888888877652 233455677788888888888877777778888888888888888


Q ss_pred             ccc
Q 042944          348 LAL  350 (637)
Q Consensus       348 ~~~  350 (637)
                      +.+
T Consensus       261 l~d  263 (418)
T KOG2982|consen  261 LSD  263 (418)
T ss_pred             ccc
Confidence            764

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.43  E-value=6.1e-08  Score=88.15  Aligned_cols=217  Identities=19%  Similarity=0.192  Sum_probs=122.2

Q ss_pred             ccccCCCCCccEEECCCCCCCchhhhHHHhhc---CCCcEEECCCCCCC---CCCCc------hhccCCCCCCEEEcCCC
Q 042944          108 LSSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS---SNLLALDLNSNQLA---GPIPD------YAFSNMTALQHLNLSLN  175 (637)
Q Consensus       108 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~---~~L~~L~L~~n~l~---~~l~~------~~~~~l~~L~~L~L~~n  175 (637)
                      +..+..+..++.++||+|.|.......+.+..   .+|+..+++.-...   ..++.      .++.+||+|+..+||+|
T Consensus        23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN  102 (388)
T COG5238          23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN  102 (388)
T ss_pred             HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence            45555667888888888888766665555443   45666666643211   11111      14667888888888888


Q ss_pred             cccc-----hhhhcCCCCCCcEEEcCCCcCCCCchhHhh----hc----ccCCCCcccEEEcCCCCCCCCcCC-----cc
Q 042944          176 QISA-----ISKSFGNMCGLKTLHLFDNNLTGQLPELFL----NL----SGCSKNSLEILKLGGNKLTGSLPD-----IT  237 (637)
Q Consensus       176 ~l~~-----l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~----~l----~~~~~~~L~~L~l~~n~~~~~~~~-----~~  237 (637)
                      .+..     +.+.+.+.+.|++|.+++|.+......-++    .+    +....|.|++.....|++......     +.
T Consensus       103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~  182 (388)
T COG5238         103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLE  182 (388)
T ss_pred             ccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHH
Confidence            7765     334567788888888888876532222222    11    113345788888888877643332     22


Q ss_pred             cCCCccEEEccCCcCCCCCC-----CcCCCCCCCcEEEcCCCCCCCCCC-----CCCCCCCCCEEEccCCcCCCCChhhh
Q 042944          238 EFSSLQELHLFDNKLDGSFP-----EKFRKPSPLVILNLDGNQLWGSLP-----DLSVFPFLTRLDVSDSRLNGTVSEGL  307 (637)
Q Consensus       238 ~~~~L~~L~l~~n~i~~~~~-----~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~n~~~~~~~~~l  307 (637)
                      ....|+.+.+..|.|.....     ..+..+.+|+.|++..|.++....     .+..++.|++|.+..|-+.......+
T Consensus       183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v  262 (388)
T COG5238         183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSV  262 (388)
T ss_pred             hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHH
Confidence            23467777777777652211     122344666777777666643221     12225556666666665543222111


Q ss_pred             ----c--CCCCCCEEecCCCcCC
Q 042944          308 ----G--RLSKLEFLDLFGNSLE  324 (637)
Q Consensus       308 ----~--~l~~L~~L~l~~n~~~  324 (637)
                          .  ..|+|..|...+|...
T Consensus       263 ~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         263 LRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             HHHhhhhcCCCccccccchhhhc
Confidence                1  2455566655555443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.43  E-value=3.9e-09  Score=108.27  Aligned_cols=126  Identities=32%  Similarity=0.271  Sum_probs=65.4

Q ss_pred             CcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEE
Q 042944          190 LKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVIL  269 (637)
Q Consensus       190 L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  269 (637)
                      |...+.+.|.+. .+...+.-++     .++.|+|++|+++. ...+..++.|++|||++|.+..........+. |+.|
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~-----ale~LnLshNk~~~-v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L  237 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLP-----ALESLNLSHNKFTK-VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL  237 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHH-----Hhhhhccchhhhhh-hHHHHhcccccccccccchhccccccchhhhh-heee
Confidence            445555555554 4455555555     66666666666663 33556666666666666665533222222322 6666


Q ss_pred             EcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCC-ChhhhcCCCCCCEEecCCCcCC
Q 042944          270 NLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGT-VSEGLGRLSKLEFLDLFGNSLE  324 (637)
Q Consensus       270 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~  324 (637)
                      .+++|.++ ..-++.++.+|+.||++.|-+.+. .-.-++.+..|+.|.+.+|.+.
T Consensus       238 ~lrnN~l~-tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  238 NLRNNALT-TLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             eecccHHH-hhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            66666554 333344455566666666655431 1111334445556666666553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.31  E-value=5.7e-08  Score=93.82  Aligned_cols=259  Identities=20%  Similarity=0.160  Sum_probs=162.4

Q ss_pred             hcCCCCCcEEEcCCCCCCCCCcccccccC-CCCCccEEECCCC-CCCchhhhHHHhhcCCCcEEECCCCC-CCCCCCchh
Q 042944           84 ITSLASLRDLYLASSTLLSINRPSLSSMN-SSTSLTLLDLSSC-GLSNSAYHWLFKISSNLLALDLNSNQ-LAGPIPDYA  160 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~n-~i~~~~~~~~~~~~~~L~~L~L~~n~-l~~~l~~~~  160 (637)
                      ..++|++++|++.++....  ...+..++ .|+.|++|++..| .+++.....+.+.+++|++|+++.|. +.+.--...
T Consensus       160 ~~~CpnIehL~l~gc~~iT--d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~  237 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKIT--DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL  237 (483)
T ss_pred             hhhCCchhhhhhhcceecc--HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence            4678999999999986332  22233343 4899999999996 57777777788888999999999985 332111124


Q ss_pred             ccCCCCCCEEEcCCCcccc---hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC--CcCC
Q 042944          161 FSNMTALQHLNLSLNQISA---ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG--SLPD  235 (637)
Q Consensus       161 ~~~l~~L~~L~L~~n~l~~---l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~--~~~~  235 (637)
                      +.+++.++.+.+.+|.-..   +-..-+.+.-+..+++..|....  ...+... .+.+.+|+.+..+++.-..  .+..
T Consensus       238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT--D~~~~~i-~~~c~~lq~l~~s~~t~~~d~~l~a  314 (483)
T KOG4341|consen  238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT--DEDLWLI-ACGCHALQVLCYSSCTDITDEVLWA  314 (483)
T ss_pred             hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc--chHHHHH-hhhhhHhhhhcccCCCCCchHHHHH
Confidence            5677888888888763322   32333456667777776664321  1111111 1233388999888775421  1112


Q ss_pred             -cccCCCccEEEccCCc-CCCCCCCcC-CCCCCCcEEEcCCCCCCCC--CCC-CCCCCCCCEEEccCCcCC-CCC----h
Q 042944          236 -ITEFSSLQELHLFDNK-LDGSFPEKF-RKPSPLVILNLDGNQLWGS--LPD-LSVFPFLTRLDVSDSRLN-GTV----S  304 (637)
Q Consensus       236 -~~~~~~L~~L~l~~n~-i~~~~~~~l-~~l~~L~~L~l~~~~~~~~--~~~-~~~~~~L~~L~l~~n~~~-~~~----~  304 (637)
                       ..+.++|+.+-+..|+ +++.....+ .+++.|+.+++.++.....  ... ...++.|+.+.+++|... +..    .
T Consensus       315 Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~  394 (483)
T KOG4341|consen  315 LGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS  394 (483)
T ss_pred             HhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh
Confidence             2345689999998886 444333333 3568899999888765321  122 233888999999988543 221    1


Q ss_pred             hhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCc
Q 042944          305 EGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNS  347 (637)
Q Consensus       305 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  347 (637)
                      ..-..+..++.+.+++++.........+..+++|+.+++-++.
T Consensus       395 ~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  395 SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            2223455677888888876655555566666777776665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.27  E-value=2.2e-08  Score=81.33  Aligned_cols=106  Identities=26%  Similarity=0.445  Sum_probs=77.4

Q ss_pred             CCccEEeCCCCCCcccCch---hhhccCCCcEEeccCccCCCCccccccccCCcccc-CCCCCcEEEcCCCcccccCChh
Q 042944          479 EYFSYLDVSDNLLSGELPD---CLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLK-KCNELKIIDAGDNKFSGTIPAW  554 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~-~l~~L~~L~ls~n~l~~~~~~~  554 (637)
                      ..+..++++.|++. -+++   .+.....|+..+|++|.+.         ..|+.+. ..+.++.|++++|.++ .+|..
T Consensus        27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk---------~fp~kft~kf~t~t~lNl~~neis-dvPeE   95 (177)
T KOG4579|consen   27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK---------KFPKKFTIKFPTATTLNLANNEIS-DVPEE   95 (177)
T ss_pred             HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh---------hCCHHHhhccchhhhhhcchhhhh-hchHH
Confidence            45667888888776 2333   3445566777788888887         4454433 3457788888888887 78887


Q ss_pred             hhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944          555 IGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS  597 (637)
Q Consensus       555 l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~  597 (637)
                      +. .+|.|+.|+++.|++. ..|..+..+.++-.||.-+|.+.
T Consensus        96 ~A-am~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   96 LA-AMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             Hh-hhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            66 6888888888888887 66777777888888888888776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.23  E-value=2e-07  Score=75.83  Aligned_cols=109  Identities=24%  Similarity=0.329  Sum_probs=52.3

Q ss_pred             CCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCC
Q 042944           89 SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQ  168 (637)
Q Consensus        89 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~  168 (637)
                      .+..++|+.|.+-.+ +++...+....+|+..+|++|.+.+..+. +...++.++.|++++|.+. ++|. .++.++.|+
T Consensus        28 E~h~ldLssc~lm~i-~davy~l~~~~el~~i~ls~N~fk~fp~k-ft~kf~t~t~lNl~~neis-dvPe-E~Aam~aLr  103 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYI-ADAVYMLSKGYELTKISLSDNGFKKFPKK-FTIKFPTATTLNLANNEIS-DVPE-ELAAMPALR  103 (177)
T ss_pred             HhhhcccccchhhHH-HHHHHHHhCCceEEEEecccchhhhCCHH-Hhhccchhhhhhcchhhhh-hchH-HHhhhHHhh
Confidence            344455555544433 12233344445555555555555433222 3322245555555555555 5555 355555555


Q ss_pred             EEEcCCCcccchhhhcCCCCCCcEEEcCCCcCC
Q 042944          169 HLNLSLNQISAISKSFGNMCGLKTLHLFDNNLT  201 (637)
Q Consensus       169 ~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~  201 (637)
                      .|+++.|.+...|..+..+.++-.|+..+|.+.
T Consensus       104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence            555555555555554444555555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.09  E-value=8.3e-06  Score=81.24  Aligned_cols=52  Identities=12%  Similarity=0.128  Sum_probs=28.1

Q ss_pred             CCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCC-CCCCccEEEcccc
Q 042944          409 PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPP-VPGNVTSLNLSNN  464 (637)
Q Consensus       409 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~L~~n  464 (637)
                      +.+++|++++|.++.. |   .-.++|+.|.+++|.-....|. .+.+|+.|++++|
T Consensus        52 ~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C  104 (426)
T PRK15386         52 RASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC  104 (426)
T ss_pred             cCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence            5677777777766533 2   1223566666666544333332 2345666666655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.07  E-value=4.2e-06  Score=90.70  Aligned_cols=134  Identities=18%  Similarity=0.175  Sum_probs=72.9

Q ss_pred             CCccEEECCCCCCC-chhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEE
Q 042944          115 TSLTLLDLSSCGLS-NSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTL  193 (637)
Q Consensus       115 ~~L~~L~L~~n~i~-~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L  193 (637)
                      .+|++|++++.... ..-+..++..+|+|+.|.+++-.+...--.....++|+|+.||+|+++++.+ .+++.+++|++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            45666666665432 2233445555666666666665443111111345666666666666666666 556666666666


Q ss_pred             EcCCCcCCC-CchhHhhhcccCCCCcccEEEcCCCCCCCCc-------CCcccCCCccEEEccCCcCCC
Q 042944          194 HLFDNNLTG-QLPELFLNLSGCSKNSLEILKLGGNKLTGSL-------PDITEFSSLQELHLFDNKLDG  254 (637)
Q Consensus       194 ~l~~n~i~~-~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~-------~~~~~~~~L~~L~l~~n~i~~  254 (637)
                      .+.+=.+.. ..-..+.+++     +|++||+|........       .--..+|+|+.||.+++.+..
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~-----~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLK-----KLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             hccCCCCCchhhHHHHhccc-----CCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            666555442 1223444555     6666666655443221       112336677777777766553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.03  E-value=1.1e-05  Score=70.69  Aligned_cols=82  Identities=24%  Similarity=0.359  Sum_probs=40.4

Q ss_pred             CCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC--CcCCcccCCCcc
Q 042944          166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG--SLPDITEFSSLQ  243 (637)
Q Consensus       166 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~L~  243 (637)
                      +...+++++|.+..+ ..|.++++|++|.+++|+|+...|.--..++     +|+.|.+.+|.+..  .+..+..+|.|+
T Consensus        43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p-----~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLP-----NLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhcc-----ccceEEecCcchhhhhhcchhccCCccc
Confidence            344455555555444 2344555555555555555543333333333     45555555555543  222345555666


Q ss_pred             EEEccCCcCC
Q 042944          244 ELHLFDNKLD  253 (637)
Q Consensus       244 ~L~l~~n~i~  253 (637)
                      +|.+-+|.++
T Consensus       117 ~Ltll~Npv~  126 (233)
T KOG1644|consen  117 YLTLLGNPVE  126 (233)
T ss_pred             eeeecCCchh
Confidence            6666555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=6e-06  Score=54.42  Aligned_cols=36  Identities=36%  Similarity=0.552  Sum_probs=16.3

Q ss_pred             CCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCC
Q 042944          166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLT  201 (637)
Q Consensus       166 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~  201 (637)
                      +|++|++++|+|+++|..++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            344444444444444444444444444444444443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.01  E-value=9.2e-06  Score=53.53  Aligned_cols=41  Identities=49%  Similarity=0.656  Sum_probs=33.4

Q ss_pred             CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhh
Q 042944          140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK  182 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~  182 (637)
                      ++|++|++++|.++ .++. .++++++|++|++++|++++++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCCCCcC
Confidence            57899999999998 8887 68999999999999999988743

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.98  E-value=1.2e-05  Score=70.54  Aligned_cols=104  Identities=18%  Similarity=0.197  Sum_probs=74.6

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCc-hhccCCCC
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPD-YAFSNMTA  166 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~-~~~~~l~~  166 (637)
                      .....+||++|.+...     ..|..++.|.+|.+.+|+|+.+.+. +...+++|+.|.|.+|.+. .+.+ .-+..+|.
T Consensus        42 d~~d~iDLtdNdl~~l-----~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL-----DNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPK  114 (233)
T ss_pred             cccceecccccchhhc-----ccCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchh-hhhhcchhccCCc
Confidence            4667788888887766     4566678888888888888866665 6666688888888888776 4332 12567788


Q ss_pred             CCEEEcCCCcccchhh----hcCCCCCCcEEEcCCC
Q 042944          167 LQHLNLSLNQISAISK----SFGNMCGLKTLHLFDN  198 (637)
Q Consensus       167 L~~L~L~~n~l~~l~~----~~~~l~~L~~L~l~~n  198 (637)
                      |++|.+-+|.++.-..    .+..+++|++||+..-
T Consensus       115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            8888888887766322    4567788888887664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.95  E-value=7.7e-06  Score=88.68  Aligned_cols=131  Identities=20%  Similarity=0.242  Sum_probs=64.8

Q ss_pred             CCCcEEECCCCCCCCCC-CchhccCCCCCCEEEcCCCcccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCC
Q 042944          140 SNLLALDLNSNQLAGPI-PDYAFSNMTALQHLNLSLNQISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSK  216 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~l-~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~  216 (637)
                      .+|++|++++......- +...-..+|+|+.|.+++-.+..  +.....++++|..||++++.++..  .+++.++    
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lk----  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLK----  195 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccc----
Confidence            34666666664322111 11122345666666666654433  334445566666666666666432  4555555    


Q ss_pred             CcccEEEcCCCCCCC--CcCCcccCCCccEEEccCCcCCCCC------CCcCCCCCCCcEEEcCCCCCC
Q 042944          217 NSLEILKLGGNKLTG--SLPDITEFSSLQELHLFDNKLDGSF------PEKFRKPSPLVILNLDGNQLW  277 (637)
Q Consensus       217 ~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~------~~~l~~l~~L~~L~l~~~~~~  277 (637)
                       +|++|.+.+-.+..  .+.++..+++|+.||++........      .+.-..+|.|+.||.++..+.
T Consensus       196 -nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  196 -NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             -cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence             66666665554442  2224556666666666654332111      011123556666666655543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.81  E-value=7.8e-05  Score=74.44  Aligned_cols=165  Identities=16%  Similarity=0.211  Sum_probs=106.3

Q ss_pred             ccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCC-CCcccCchhhhccCCCcE
Q 042944          429 SLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDN-LLSGELPDCLLRWQALAV  507 (637)
Q Consensus       429 ~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~  507 (637)
                      +..+..++.|++++|.++.. |..+++|++|.+++|.-....+....   ++|++|++++| .+. .+|      ++|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sL-P~LP~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~-sLP------~sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESL-PVLPNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEIS-GLP------ESVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCccc-CCCCCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccc-ccc------cccce
Confidence            34568899999999987765 56678999999998655444443221   78999999999 444 444      45888


Q ss_pred             EeccCccCCCCccccccccCCccccCCCCCcEEEcCCCc-cc-ccCChhhhhcCCCCcEEeccCccccccCCccccCCCC
Q 042944          508 LNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNK-FS-GTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSK  585 (637)
Q Consensus       508 L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~-l~-~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~  585 (637)
                      |++.++.....      +.+|.      +|+.|.+.+++ .. ..++..+   .++|++|++++|... .+|..+.  .+
T Consensus       117 L~L~~n~~~~L------~~LPs------sLk~L~I~~~n~~~~~~lp~~L---PsSLk~L~Is~c~~i-~LP~~LP--~S  178 (426)
T PRK15386        117 LEIKGSATDSI------KNVPN------GLTSLSINSYNPENQARIDNLI---SPSLKTLSLTGCSNI-ILPEKLP--ES  178 (426)
T ss_pred             EEeCCCCCccc------ccCcc------hHhheecccccccccccccccc---CCcccEEEecCCCcc-cCccccc--cc
Confidence            88887765421      14553      46778875433 21 1222211   368999999999976 5665554  69


Q ss_pred             CcEeeCCCCcc------cccccccccccccceeeccCCCeeEEE
Q 042944          586 IQLLDFSLNSI------SGAIPKCINNLTAMVEKASSNSTITHI  623 (637)
Q Consensus       586 L~~L~ls~n~l------~~~~p~~l~~l~~L~~l~l~~n~l~~~  623 (637)
                      |+.|+++.+..      ...+|+.+ .+.....+.++.+.++.-
T Consensus       179 Lk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~d~  221 (426)
T PRK15386        179 LQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFKDK  221 (426)
T ss_pred             CcEEEecccccccccCccccccccc-EechhhhcccCHHHhhcc
Confidence            99999988731      23556555 444444444444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=1.2e-05  Score=73.81  Aligned_cols=81  Identities=26%  Similarity=0.258  Sum_probs=44.7

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCc-hhccCC
Q 042944           86 SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPD-YAFSNM  164 (637)
Q Consensus        86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~-~~~~~l  164 (637)
                      .+.+++.|++.+|++.++     +.+.+++.|+.|.||-|+|+...+  +.++ ++|++|.|..|.|. .+.. ..+.++
T Consensus        17 dl~~vkKLNcwg~~L~DI-----sic~kMp~lEVLsLSvNkIssL~p--l~rC-trLkElYLRkN~I~-sldEL~YLknl   87 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI-----SICEKMPLLEVLSLSVNKISSLAP--LQRC-TRLKELYLRKNCIE-SLDELEYLKNL   87 (388)
T ss_pred             HHHHhhhhcccCCCccHH-----HHHHhcccceeEEeeccccccchh--HHHH-HHHHHHHHHhcccc-cHHHHHHHhcC
Confidence            355666666666666665     345555666666666666654443  4454 66666666666555 4332 123455


Q ss_pred             CCCCEEEcCCC
Q 042944          165 TALQHLNLSLN  175 (637)
Q Consensus       165 ~~L~~L~L~~n  175 (637)
                      ++|+.|.|..|
T Consensus        88 psLr~LWL~EN   98 (388)
T KOG2123|consen   88 PSLRTLWLDEN   98 (388)
T ss_pred             chhhhHhhccC
Confidence            55555555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.26  E-value=0.00078  Score=57.25  Aligned_cols=119  Identities=24%  Similarity=0.372  Sum_probs=62.4

Q ss_pred             hhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhcc
Q 042944           83 TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFS  162 (637)
Q Consensus        83 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~  162 (637)
                      .|..+++|+.+.+.. .+..+..   .++..+++|+.+.+..+ +.......+... ++++.+.+.+ .+. .++...|.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~---~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~-~~l~~i~~~~-~~~-~i~~~~F~   78 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGE---NAFSNCTSLKSINFPNN-LTSIGDNAFSNC-KSLESITFPN-NLK-SIGDNAFS   78 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-T---TTTTT-TT-SEEEESST-TSCE-TTTTTT--TT-EEEEETS-TT--EE-TTTTT
T ss_pred             HHhCCCCCCEEEECC-CeeEeCh---hhccccccccccccccc-ccccceeeeecc-cccccccccc-ccc-cccccccc
Confidence            467778888888874 4555554   45666678888888775 554444444444 7888888875 554 66666788


Q ss_pred             CCCCCCEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcc
Q 042944          163 NMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLS  212 (637)
Q Consensus       163 ~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~  212 (637)
                      .+++|+.+.+..+ +..++ ..|.++ +|+.+.+.. .+.......|.++.
T Consensus        79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~  126 (129)
T PF13306_consen   79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCT  126 (129)
T ss_dssp             T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG---
T ss_pred             ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccc
Confidence            8888888888765 66654 356666 888888776 34435556666655

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=1.5e-05  Score=73.19  Aligned_cols=99  Identities=24%  Similarity=0.358  Sum_probs=65.0

Q ss_pred             CCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhh--hcCCCCCCc
Q 042944          114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK--SFGNMCGLK  191 (637)
Q Consensus       114 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~l~~L~  191 (637)
                      +.+.+.|++-+|.+.++.   +..-++.|++|.|+-|+|+ .+..  +..|++|++|.|+.|.|.++.+  .+.++++|+
T Consensus        18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            356667777777776544   3344477777777777776 6665  6777777777777777777543  466777777


Q ss_pred             EEEcCCCcCCCCchh-----HhhhcccCCCCcccEEE
Q 042944          192 TLHLFDNNLTGQLPE-----LFLNLSGCSKNSLEILK  223 (637)
Q Consensus       192 ~L~l~~n~i~~~~~~-----~l~~l~~~~~~~L~~L~  223 (637)
                      .|.+..|...+..+.     .+.-++     +|+.|+
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LP-----nLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLP-----NLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcc-----cchhcc
Confidence            777777766554433     234444     666665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.16  E-value=0.00019  Score=65.99  Aligned_cols=86  Identities=20%  Similarity=0.278  Sum_probs=41.7

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCC--CCCchhhhHHHhhcCCCcEEECCCCCCC--CCCCchhc
Q 042944           86 SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSC--GLSNSAYHWLFKISSNLLALDLNSNQLA--GPIPDYAF  161 (637)
Q Consensus        86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n--~i~~~~~~~~~~~~~~L~~L~L~~n~l~--~~l~~~~~  161 (637)
                      .+..|+.|++.++.++..     ..+-.+++|+.|.++.|  ++...... +...+|+|++|++++|++.  .+++.  +
T Consensus        41 ~~~~le~ls~~n~gltt~-----~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~p--l  112 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTL-----TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRP--L  112 (260)
T ss_pred             cccchhhhhhhccceeec-----ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccch--h
Confidence            344555555555555544     34445566666666666  33322222 2222366666666666554  11222  3


Q ss_pred             cCCCCCCEEEcCCCcccc
Q 042944          162 SNMTALQHLNLSLNQISA  179 (637)
Q Consensus       162 ~~l~~L~~L~L~~n~l~~  179 (637)
                      ..+.+|..|++.+|..+.
T Consensus       113 ~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhcchhhhhcccCCccc
Confidence            344445555555544333

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.12  E-value=0.00011  Score=78.63  Aligned_cols=37  Identities=24%  Similarity=0.198  Sum_probs=16.2

Q ss_pred             CCCCCCEEEcCCCc-ccc--hhhhcCCCCCCcEEEcCCCc
Q 042944          163 NMTALQHLNLSLNQ-ISA--ISKSFGNMCGLKTLHLFDNN  199 (637)
Q Consensus       163 ~l~~L~~L~L~~n~-l~~--l~~~~~~l~~L~~L~l~~n~  199 (637)
                      .+++|+.|+++++. +++  +......+++|++|.+.+|.
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS  280 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence            34455555555554 333  11112224555555544444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.03  E-value=0.00019  Score=76.81  Aligned_cols=242  Identities=22%  Similarity=0.130  Sum_probs=133.2

Q ss_pred             hcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCC-C-CC--chhhhHHHhhcCCCcEEECCCCC-CCCCCCc
Q 042944           84 ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSC-G-LS--NSAYHWLFKISSNLLALDLNSNQ-LAGPIPD  158 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n-~-i~--~~~~~~~~~~~~~L~~L~L~~n~-l~~~l~~  158 (637)
                      ...++.|+.|.+.++.-..... ..+....+++|+.|+++++ . +.  ......+...+++|+.|+++++. ++ +..-
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-d~~l  261 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDDS-LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-DIGL  261 (482)
T ss_pred             HhhCchhhHhhhcccccCChhh-HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC-chhH
Confidence            3457899999998874333210 1244566799999999873 2 22  11223355556889999999988 55 4333


Q ss_pred             hhcc-CCCCCCEEEcCCCc-ccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC
Q 042944          159 YAFS-NMTALQHLNLSLNQ-ISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP  234 (637)
Q Consensus       159 ~~~~-~l~~L~~L~L~~n~-l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~  234 (637)
                      ..+. .+++|++|.+.+|. +++  +.....++++|++|++++|...  ....+... ...+++++.+.+.....     
T Consensus       262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~--~d~~l~~~-~~~c~~l~~l~~~~~~~-----  333 (482)
T KOG1947|consen  262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL--TDSGLEAL-LKNCPNLRELKLLSLNG-----  333 (482)
T ss_pred             HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc--hHHHHHHH-HHhCcchhhhhhhhcCC-----
Confidence            2333 48899999988887 565  5556678899999999988764  11112111 11123666655433321     


Q ss_pred             CcccCCCccEEEccCCcC---CCCCCCcCCCCCCCcEEEcCCCCCCCCC--CCCCCCCCCCEEEccCCcCCCCChhhhcC
Q 042944          235 DITEFSSLQELHLFDNKL---DGSFPEKFRKPSPLVILNLDGNQLWGSL--PDLSVFPFLTRLDVSDSRLNGTVSEGLGR  309 (637)
Q Consensus       235 ~~~~~~~L~~L~l~~n~i---~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~l~~  309 (637)
                          ++.++.+.+.+...   ..........+++++.+.+..+......  ..+.+++.|+ ..+         ......
T Consensus       334 ----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l---------~~~~~~  399 (482)
T KOG1947|consen  334 ----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESL---------ELRLCR  399 (482)
T ss_pred             ----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHH---------HHHhcc
Confidence                33444444443322   1122234556777777777776633221  1222244441 111         111222


Q ss_pred             CCCCCEEecCCCcCCCccchhhhcC-CCCCcEEEccCCccc
Q 042944          310 LSKLEFLDLFGNSLEGMITESHVSN-LSKLKYMDFSFNSLA  349 (637)
Q Consensus       310 l~~L~~L~l~~n~~~~~~~~~~~~~-l~~L~~L~l~~n~~~  349 (637)
                      ...++.|+++.+............. +..++.+++.++...
T Consensus       400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~  440 (482)
T KOG1947|consen  400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI  440 (482)
T ss_pred             CCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence            2237777777776543322222222 566677777666543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.01  E-value=0.0027  Score=53.88  Aligned_cols=106  Identities=17%  Similarity=0.170  Sum_probs=41.5

Q ss_pred             CcCCCCCCCcEEEcCCCCCCCCCCCCCC-CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCC
Q 042944          258 EKFRKPSPLVILNLDGNQLWGSLPDLSV-FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLS  336 (637)
Q Consensus       258 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  336 (637)
                      .+|.++++|+.+.+.. .+..+....+. +++++.+.+.++ +......++.++++++.+.+.+ .+.. .+...|..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~-i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS-IGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E-E-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccc-cccccccccc
Confidence            3455555566665553 23323332222 445555555553 4434444455555566666644 2221 2233555566


Q ss_pred             CCcEEEccCCcccccccCCCCCCCceeEEeccC
Q 042944          337 KLKYMDFSFNSLALNFSFGWLPPFQLESIGLLH  369 (637)
Q Consensus       337 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  369 (637)
                      +++.+++..+ +.......+... .++.+.+..
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            6666666543 333333344443 555554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.92  E-value=0.00031  Score=64.62  Aligned_cols=83  Identities=30%  Similarity=0.456  Sum_probs=43.5

Q ss_pred             CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCC--CCCCCCCchhccCCCCCCEEEcCCCcccchh--hhcCCCCCC
Q 042944          115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSN--QLAGPIPDYAFSNMTALQHLNLSLNQISAIS--KSFGNMCGL  190 (637)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n--~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~l~~L  190 (637)
                      ..|+.|++.+..++....  +..+ ++|++|.++.|  .+.+.++. ....+++|++|++++|+|..+.  ..+..+.+|
T Consensus        43 ~~le~ls~~n~gltt~~~--~P~L-p~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTN--FPKL-PKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cchhhhhhhccceeeccc--CCCc-chhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            455555555555543221  3333 66666666666  44433433 2334466666666666665431  123445556


Q ss_pred             cEEEcCCCcCC
Q 042944          191 KTLHLFDNNLT  201 (637)
Q Consensus       191 ~~L~l~~n~i~  201 (637)
                      ..|++.+|..+
T Consensus       119 ~~Ldl~n~~~~  129 (260)
T KOG2739|consen  119 KSLDLFNCSVT  129 (260)
T ss_pred             hhhhcccCCcc
Confidence            66666666544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.25  E-value=3e-05  Score=80.47  Aligned_cols=192  Identities=19%  Similarity=0.196  Sum_probs=103.0

Q ss_pred             ccEEECCCCcCCCccc----ccccCCCCCCeEeCCCCcCcCCCCCC-CCCccEEEcccccccCcccccccccCCCccEEe
Q 042944          411 LYYLNLSHNHLEGTVL----DLSLNYAGYPGIDLSSNDFEGPVPPV-PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLD  485 (637)
Q Consensus       411 L~~L~l~~n~i~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~  485 (637)
                      +..+.+.+|.+.....    ..+...+.|..|++++|.+....... ...++..                  ...+++|+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~------------------~~~l~~L~  150 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLP------------------QCLLQTLE  150 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccc------------------hHHHHHHH
Confidence            6777888888775432    33445666666777776665211100 0000000                  03344455


Q ss_pred             CCCCCCccc----CchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCC----hhhhh
Q 042944          486 VSDNLLSGE----LPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIP----AWIGD  557 (637)
Q Consensus       486 l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~----~~l~~  557 (637)
                      +..|.+++.    +.+.+...+.++.++++.|.+...........++..+....++++|.+++|.++...-    ..+. 
T Consensus       151 l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~-  229 (478)
T KOG4308|consen  151 LVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA-  229 (478)
T ss_pred             hhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh-
Confidence            555555432    3445555667777777777664221110111111112245667777777777652111    1122 


Q ss_pred             cCCC-CcEEeccCcccccc----CCccccCC-CCCcEeeCCCCcccc----cccccccccccceeeccCCCeeE
Q 042944          558 TLPK-LAILSLRSNQFHGS----IPRNLCRL-SKIQLLDFSLNSISG----AIPKCINNLTAMVEKASSNSTIT  621 (637)
Q Consensus       558 ~l~~-L~~L~L~~n~~~~~----~~~~l~~l-~~L~~L~ls~n~l~~----~~p~~l~~l~~L~~l~l~~n~l~  621 (637)
                      ..+. +.+|++.+|++.+.    +...+..+ ..++.++++.|++++    .+++.+..+++++++.+++|.+.
T Consensus       230 ~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  230 SGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             ccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            3444 66677777776532    33445555 677788888887764    33445567777888888887774

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.93  E-value=0.0035  Score=34.15  Aligned_cols=21  Identities=33%  Similarity=0.657  Sum_probs=11.8

Q ss_pred             CCcEeeCCCCcccccccccccc
Q 042944          585 KIQLLDFSLNSISGAIPKCINN  606 (637)
Q Consensus       585 ~L~~L~ls~n~l~~~~p~~l~~  606 (637)
                      +|++|||++|.++ .+|..|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3556666666666 55555543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.60  E-value=0.006  Score=33.23  Aligned_cols=19  Identities=42%  Similarity=0.623  Sum_probs=9.7

Q ss_pred             CCEEEcCCCcccchhhhcC
Q 042944          167 LQHLNLSLNQISAISKSFG  185 (637)
Q Consensus       167 L~~L~L~~n~l~~l~~~~~  185 (637)
                      |++|++++|+++.+|..|+
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4555555555555554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.33  E-value=0.00033  Score=72.92  Aligned_cols=111  Identities=27%  Similarity=0.318  Sum_probs=63.9

Q ss_pred             CcEEEcCCCCCCCCCcccc-cccCCCCCccEEECCCCCCCchhhhHHHhhcC----CCcEEECCCCCCCCC----CCchh
Q 042944           90 LRDLYLASSTLLSINRPSL-SSMNSSTSLTLLDLSSCGLSNSAYHWLFKISS----NLLALDLNSNQLAGP----IPDYA  160 (637)
Q Consensus        90 L~~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~----~L~~L~L~~n~l~~~----l~~~~  160 (637)
                      +..|.|.+|.+.+...... .++...++|..|++++|.+.+.....+...++    .+++|++..|.+++.    +.. .
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~-~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA-V  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH-H
Confidence            6777777777766532221 34455677778888888777655554444322    355667777766522    222 3


Q ss_pred             ccCCCCCCEEEcCCCcccc-----hhhhcC----CCCCCcEEEcCCCcCC
Q 042944          161 FSNMTALQHLNLSLNQISA-----ISKSFG----NMCGLKTLHLFDNNLT  201 (637)
Q Consensus       161 ~~~l~~L~~L~L~~n~l~~-----l~~~~~----~l~~L~~L~l~~n~i~  201 (637)
                      +....+++.++++.|.+..     ++..+.    ...++++|.+.+|.++
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence            4446677777777776643     223333    3556666666666554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.68  E-value=0.0054  Score=54.32  Aligned_cols=82  Identities=17%  Similarity=0.237  Sum_probs=41.7

Q ss_pred             CCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCC-CCchhhhHHHhhcCCCcEEECCCCC-CCCCCCchhccCCCC
Q 042944           89 SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCG-LSNSAYHWLFKISSNLLALDLNSNQ-LAGPIPDYAFSNMTA  166 (637)
Q Consensus        89 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~~~~~L~~L~L~~n~-l~~~l~~~~~~~l~~  166 (637)
                      .++.++-+++.|..+.   ++.+.+++.++.|.+.+|. +.+.....+....++|+.|++++|. |+ +-.-..+.++++
T Consensus       102 ~IeaVDAsds~I~~eG---le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lkn  177 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEG---LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKN  177 (221)
T ss_pred             eEEEEecCCchHHHHH---HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhh
Confidence            3555555555555443   3455555666666665553 3333444444455666666666553 33 222223445555


Q ss_pred             CCEEEcCC
Q 042944          167 LQHLNLSL  174 (637)
Q Consensus       167 L~~L~L~~  174 (637)
                      |+.|.+.+
T Consensus       178 Lr~L~l~~  185 (221)
T KOG3864|consen  178 LRRLHLYD  185 (221)
T ss_pred             hHHHHhcC
Confidence            55555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.92  E-value=0.012  Score=52.12  Aligned_cols=86  Identities=15%  Similarity=0.132  Sum_probs=58.6

Q ss_pred             CCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCc-cchhhhhcCCCccEEECCCC-cCCCcccccccCCCCC
Q 042944          358 PPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDA-VPSWFWDLSPNLYYLNLSHN-HLEGTVLDLSLNYAGY  435 (637)
Q Consensus       358 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~-~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~~L  435 (637)
                      .-..++.++.+++.+..+-.+-+.+++.++.|.+.+|.-.+. ....+....++|+.|+|++| +||+.....+..+++|
T Consensus        99 ~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL  178 (221)
T KOG3864|consen   99 DNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL  178 (221)
T ss_pred             CcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence            334567777777776655556677777888888877764433 33444555688888888877 5777666777777777


Q ss_pred             CeEeCCCC
Q 042944          436 PGIDLSSN  443 (637)
Q Consensus       436 ~~L~l~~n  443 (637)
                      +.|.+.+=
T Consensus       179 r~L~l~~l  186 (221)
T KOG3864|consen  179 RRLHLYDL  186 (221)
T ss_pred             HHHHhcCc
Confidence            77776653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.55  E-value=0.047  Score=27.49  Aligned_cols=12  Identities=42%  Similarity=0.672  Sum_probs=3.7

Q ss_pred             CCEEEcCCCccc
Q 042944          167 LQHLNLSLNQIS  178 (637)
Q Consensus       167 L~~L~L~~n~l~  178 (637)
                      |+.|++++|+++
T Consensus         3 L~~L~l~~n~L~   14 (17)
T PF13504_consen    3 LRTLDLSNNRLT   14 (17)
T ss_dssp             -SEEEETSS--S
T ss_pred             cCEEECCCCCCC
Confidence            344444444433

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.17  E-value=0.03  Score=28.21  Aligned_cols=13  Identities=31%  Similarity=0.554  Sum_probs=5.9

Q ss_pred             CCcEeeCCCCccc
Q 042944          585 KIQLLDFSLNSIS  597 (637)
Q Consensus       585 ~L~~L~ls~n~l~  597 (637)
                      +|+.|+|++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4556666666654

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.50  E-value=0.18  Score=28.59  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=12.1

Q ss_pred             CCCcEEEcCCCcccccCChhhh
Q 042944          535 NELKIIDAGDNKFSGTIPAWIG  556 (637)
Q Consensus       535 ~~L~~L~ls~n~l~~~~~~~l~  556 (637)
                      ++|++|++++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45566666666665 5555544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.50  E-value=0.18  Score=28.59  Aligned_cols=21  Identities=24%  Similarity=0.392  Sum_probs=12.1

Q ss_pred             CCCcEEEcCCCcccccCChhhh
Q 042944          535 NELKIIDAGDNKFSGTIPAWIG  556 (637)
Q Consensus       535 ~~L~~L~ls~n~l~~~~~~~l~  556 (637)
                      ++|++|++++|+++ .+|...|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45566666666665 5555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.07  E-value=0.21  Score=28.32  Aligned_cols=21  Identities=52%  Similarity=0.755  Sum_probs=11.0

Q ss_pred             CCCcEEECCCCCCCCCCCchhc
Q 042944          140 SNLLALDLNSNQLAGPIPDYAF  161 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~l~~~~~  161 (637)
                      ++|++|+|++|.+. .+|.++|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            44555555555555 5554443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.07  E-value=0.21  Score=28.32  Aligned_cols=21  Identities=52%  Similarity=0.755  Sum_probs=11.0

Q ss_pred             CCCcEEECCCCCCCCCCCchhc
Q 042944          140 SNLLALDLNSNQLAGPIPDYAF  161 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~l~~~~~  161 (637)
                      ++|++|+|++|.+. .+|.++|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            44555555555555 5554443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.01  E-value=0.0089  Score=54.00  Aligned_cols=87  Identities=11%  Similarity=0.156  Sum_probs=62.2

Q ss_pred             hhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCc
Q 042944          499 LLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPR  578 (637)
Q Consensus       499 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~  578 (637)
                      +......+.||++.|++.         .+-..++-++.|..||++.|++. ..|....+ ...+..+++.+|..+ ..|.
T Consensus        38 i~~~kr~tvld~~s~r~v---------n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q-~~e~~~~~~~~n~~~-~~p~  105 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV---------NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQ-QRETVNAASHKNNHS-QQPK  105 (326)
T ss_pred             hhccceeeeehhhhhHHH---------hhccchHHHHHHHHHhccHhhHh-hChhhHHH-HHHHHHHHhhccchh-hCCc
Confidence            444566777777777765         44455666777777888888776 77777663 667777777777776 6777


Q ss_pred             cccCCCCCcEeeCCCCccc
Q 042944          579 NLCRLSKIQLLDFSLNSIS  597 (637)
Q Consensus       579 ~l~~l~~L~~L~ls~n~l~  597 (637)
                      ++.+.+.+++++.-+|++.
T Consensus       106 s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  106 SQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccccCCcchhhhccCcch
Confidence            7788888888887777765

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=90.84  E-value=0.0091  Score=53.97  Aligned_cols=92  Identities=16%  Similarity=0.142  Sum_probs=58.7

Q ss_pred             CCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC
Q 042944          155 PIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP  234 (637)
Q Consensus       155 ~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~  234 (637)
                      .+|...+......+.||++.|++..+...|..++.|..|+++.|++. ..|..+++..     .+..++...|.....+.
T Consensus        32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~-----e~~~~~~~~n~~~~~p~  105 (326)
T KOG0473|consen   32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQR-----ETVNAASHKNNHSQQPK  105 (326)
T ss_pred             ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHH-----HHHHHHhhccchhhCCc
Confidence            45544555666667777777766666666666666777777777665 5666666666     66666666666665555


Q ss_pred             CcccCCCccEEEccCCcC
Q 042944          235 DITEFSSLQELHLFDNKL  252 (637)
Q Consensus       235 ~~~~~~~L~~L~l~~n~i  252 (637)
                      .....+.+++++..++.+
T Consensus       106 s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  106 SQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             cccccCCcchhhhccCcc
Confidence            566666666666665554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.43  E-value=0.14  Score=28.38  Aligned_cols=21  Identities=29%  Similarity=0.347  Sum_probs=12.0

Q ss_pred             CCccEEECCCCCCCchhhhHH
Q 042944          115 TSLTLLDLSSCGLSNSAYHWL  135 (637)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~  135 (637)
                      ++|++|++++|.+++..+.++
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            567777777777665555444

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.83  E-value=0.12  Score=28.77  Aligned_cols=16  Identities=31%  Similarity=0.499  Sum_probs=7.5

Q ss_pred             CCCcEeeCCCCccccc
Q 042944          584 SKIQLLDFSLNSISGA  599 (637)
Q Consensus       584 ~~L~~L~ls~n~l~~~  599 (637)
                      ++|++|+|++|++++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4555555555555543

...

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=86.13  E-value=0.91  Score=26.33  Aligned_cols=24  Identities=33%  Similarity=0.285  Sum_probs=16.7

Q ss_pred             CCccEEECCCCCCCchhhhHHHhh
Q 042944          115 TSLTLLDLSSCGLSNSAYHWLFKI  138 (637)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~  138 (637)
                      ++|++|+|++|.+.+.....+.+.
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHH
Confidence            567888888888876666555544

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=85.33  E-value=0.53  Score=26.75  Aligned_cols=18  Identities=33%  Similarity=0.300  Sum_probs=12.8

Q ss_pred             cccceeeccCCCeeEEEE
Q 042944          607 LTAMVEKASSNSTITHIY  624 (637)
Q Consensus       607 l~~L~~l~l~~n~l~~~~  624 (637)
                      ++.|+.|++++|+|++++
T Consensus         1 L~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        1 LTNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CCccCEEECCCCccceec
Confidence            356777777777777764

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=82.31  E-value=6.2  Score=40.29  Aligned_cols=65  Identities=25%  Similarity=0.245  Sum_probs=41.3

Q ss_pred             CccEEeCCCCCCcccC---chhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCccc
Q 042944          480 YFSYLDVSDNLLSGEL---PDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFS  548 (637)
Q Consensus       480 ~L~~L~l~~n~l~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~  548 (637)
                      -+..+.++.|.+....   ...+..-+.+.+|++++|...+....    .+|...+.-.++.....+.|..+
T Consensus       414 ~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap----~lpkalq~n~rlr~ipds~n~p~  481 (553)
T KOG4242|consen  414 VLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAP----PLPKALQSNCRLRPIPDSLNLPE  481 (553)
T ss_pred             cccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCC----cCccccCCCCccCCCCCCCCCcc
Confidence            3455666666665322   22344457788888888877654433    55666666667888888888765

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=80.76  E-value=7.9  Score=39.56  Aligned_cols=21  Identities=24%  Similarity=0.283  Sum_probs=10.1

Q ss_pred             CCCCEEEccCCcCCCCChhhh
Q 042944          287 PFLTRLDVSDSRLNGTVSEGL  307 (637)
Q Consensus       287 ~~L~~L~l~~n~~~~~~~~~l  307 (637)
                      +.+++++++.|.+.+..+..+
T Consensus       165 pr~r~~dls~npi~dkvpihl  185 (553)
T KOG4242|consen  165 PRARQHDLSPNPIGDKVPIHL  185 (553)
T ss_pred             chhhhhccCCCcccccCCccc
Confidence            344555555555554444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	637
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-19
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-16
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-19
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-16
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-04
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-04
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		5e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 135/512 (26%), Positives = 203/512 (39%), Gaps = 69/512 (13%)
Query: 172 LSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLT- 230
           LS + I+     F     L +L L  N+L+G +  L  +L  CS   L+ L +  N L  
Sbjct: 81  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL-TSLGSCS--GLKFLNVSSNTLDF 137
Query: 231 -GSLPDITEFSSLQELHLFDNKLDGSFPEKF---RKPSPLVILNLDGNQLWGSLPDLSVF 286
            G +    + +SL+ L L  N + G+    +        L  L + GN++ G + D+S  
Sbjct: 138 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRC 196
Query: 287 PFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDXXXX 346
             L  LDVS +  +  +   LG  S L+ LD+ GN L G  + + +S  ++LK ++    
Sbjct: 197 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSN 254
Query: 347 XXXXXXXXGWLPPFQLESI---GLLHCKLGPHFPKWLQSQ-KNYYFLDISDTEISDAVPS 402
                   G +PP  L+S+    L   K     P +L         LD+S      AVP 
Sbjct: 255 QFV-----GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Query: 403 WFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVT----S 458
           +F                     +D  L   G   +DLS N+F G +P    N++    +
Sbjct: 310 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 369
Query: 459 LNLSNNKFSGPI-SSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQXXXXXXXXXXXFSG 517
           L+LS+N FSGPI  +LC         L + +N  +G++P  L                SG
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 518 NF--------------------------------------LTF--FVGEIPPSLKKCNEL 537
                                                   L F    GEIP  L  C  L
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 538 KIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
             I   +N+ +G IP WIG  L  LAIL L +N F G+IP  L     +  LD + N  +
Sbjct: 490 NWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 548
Query: 598 GAIPKCINNLTAMVEKASSNSTITHIYVYYRS 629
           G IP  +   +    K ++N      YVY ++
Sbjct: 549 GTIPAAMFKQSG---KIAANFIAGKRYVYIKN 577

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 157/376 (41%), Gaps = 39/376 (10%)
Query: 271 LDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEGMIT 328
           L  + + GS+        LT LD+S + L+G V+    LG  S L+FL++  N+L+    
Sbjct: 81  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 329 ESHVSNLSKLKYMDXXXXXXXXXXXXGWL---PPFQLESIGLLHCKLGPHFPKWLQSQKN 385
            S    L+ L+ +D            GW+      +L+ + +   K+       +    N
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN 198
Query: 386 YYFLDISDTEISDAVP-----SWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDL 440
             FLD+S    S  +P     S                     T  +L L       +++
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL-------LNI 251
Query: 441 SSNDFEGPVPPVP-GNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCL 499
           SSN F GP+PP+P  ++  L+L+ NKF+G I    S + +  + LD+S N   G +P   
Sbjct: 252 SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 500 LRWQXXXXXXXXXXXFSGNFLTFFVGEIP-PSLKKCNELKIIDAGDNKFSGTIPAWIGDT 558
                          FSG        E+P  +L K   LK++D   N+FSG +P  + + 
Sbjct: 312 GSCSLLESLALSSNNFSG--------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 363
Query: 559 LPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSL--NSISGAIPKCINNLTAMVEKASS 616
              L  L L SN F G I  NLC+  K  L +  L  N  +G IP  ++N + +V     
Sbjct: 364 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS---- 419
Query: 617 NSTITHIYVYYRSATL 632
                H+   Y S T+
Sbjct: 420 ----LHLSFNYLSGTI 431

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 135/512 (26%), Positives = 203/512 (39%), Gaps = 69/512 (13%)
Query: 172 LSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLT- 230
           LS + I+     F     L +L L  N+L+G +  L  +L  CS   L+ L +  N L  
Sbjct: 84  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL-TSLGSCS--GLKFLNVSSNTLDF 140
Query: 231 -GSLPDITEFSSLQELHLFDNKLDGSFPEKF---RKPSPLVILNLDGNQLWGSLPDLSVF 286
            G +    + +SL+ L L  N + G+    +        L  L + GN++ G + D+S  
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV-DVSRC 199
Query: 287 PFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDXXXX 346
             L  LDVS +  +  +   LG  S L+ LD+ GN L G  + + +S  ++LK ++    
Sbjct: 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSN 257
Query: 347 XXXXXXXXGWLPPFQLESI---GLLHCKLGPHFPKWLQSQ-KNYYFLDISDTEISDAVPS 402
                   G +PP  L+S+    L   K     P +L         LD+S      AVP 
Sbjct: 258 QFV-----GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 403 WFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTS---- 458
           +F                     +D  L   G   +DLS N+F G +P    N+++    
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 459 LNLSNNKFSGPI-SSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQXXXXXXXXXXXFSG 517
           L+LS+N FSGPI  +LC         L + +N  +G++P  L                SG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 518 NF--------------------------------------LTF--FVGEIPPSLKKCNEL 537
                                                   L F    GEIP  L  C  L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 538 KIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
             I   +N+ +G IP WIG  L  LAIL L +N F G+IP  L     +  LD + N  +
Sbjct: 493 NWISLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 598 GAIPKCINNLTAMVEKASSNSTITHIYVYYRS 629
           G IP  +   +    K ++N      YVY ++
Sbjct: 552 GTIPAAMFKQSG---KIAANFIAGKRYVYIKN 580

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 157/376 (41%), Gaps = 39/376 (10%)
Query: 271 LDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEGMIT 328
           L  + + GS+        LT LD+S + L+G V+    LG  S L+FL++  N+L+    
Sbjct: 84  LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 329 ESHVSNLSKLKYMDXXXXXXXXXXXXGWL---PPFQLESIGLLHCKLGPHFPKWLQSQKN 385
            S    L+ L+ +D            GW+      +L+ + +   K+       +    N
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVN 201
Query: 386 YYFLDISDTEISDAVP-----SWFWDXXXXXXXXXXXXXXXEGTVLDLSLNYAGYPGIDL 440
             FLD+S    S  +P     S                     T  +L L       +++
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKL-------LNI 254
Query: 441 SSNDFEGPVPPVP-GNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCL 499
           SSN F GP+PP+P  ++  L+L+ NKF+G I    S + +  + LD+S N   G +P   
Sbjct: 255 SSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 500 LRWQXXXXXXXXXXXFSGNFLTFFVGEIP-PSLKKCNELKIIDAGDNKFSGTIPAWIGDT 558
                          FSG        E+P  +L K   LK++D   N+FSG +P  + + 
Sbjct: 315 GSCSLLESLALSSNNFSG--------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366
Query: 559 LPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSL--NSISGAIPKCINNLTAMVEKASS 616
              L  L L SN F G I  NLC+  K  L +  L  N  +G IP  ++N + +V     
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS---- 422
Query: 617 NSTITHIYVYYRSATL 632
                H+   Y S T+
Sbjct: 423 ----LHLSFNYLSGTI 434

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 74/172 (43%), Gaps = 32/172 (18%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
           + D  F  +T L  LNL  NQ+  +S   F ++  L TL L +N L      +F +L+  
Sbjct: 50  LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT-- 107
Query: 215 SKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD 272
               L+ L LGGN+L  SLP       + L+EL L  N+L       F K + L  L+L 
Sbjct: 108 ---QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 273 GNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLE 324
            NQL  S+P                           RL KL+ + LFGN  +
Sbjct: 164 TNQLQ-SVP----------------------HGAFDRLGKLQTITLFGNQFD 192

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 74/172 (43%), Gaps = 32/172 (18%)
Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
           + D  F  +T L  LNL  NQ+  +S   F ++  L TL L +N L      +F +L+  
Sbjct: 50  LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT-- 107
Query: 215 SKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD 272
               L+ L LGGN+L  SLP       + L+EL L  N+L       F K + L  L+L 
Sbjct: 108 ---QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163
Query: 273 GNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLE 324
            NQL  S+P                           RL KL+ + LFGN  +
Sbjct: 164 TNQLQ-SVP----------------------HGAFDRLGKLQTITLFGNQFD 192

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 6/178 (3%)
Query: 153 AGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNL 211
           +G IPD+  S +  L  L+ S N +S  +  S  ++  L  +    N ++G +P+ +   
Sbjct: 114 SGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--- 169
Query: 212 SGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNL 271
            G        + +  N+LTG +P      +L  + L  N L+G     F        ++L
Sbjct: 170 -GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 272 DGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITE 329
             N L   L  + +   L  LD+ ++R+ GT+ +GL +L  L  L++  N+L G I +
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 75/151 (49%), Gaps = 26/151 (17%)
Query: 165 TALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPE----------LFLNLSGC 214
           T+L++L+LS N +  +S +F  +  L+ L    +NL  Q+ E          ++L++S  
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT 431
Query: 215 SK-----------NSLEILKLGGNKLTGS-LPDI-TEFSSLQELHLFDNKLDGSFPEKFR 261
                        +SLE+LK+ GN    + LPDI TE  +L  L L   +L+   P  F 
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 262 KPSPLVILNLDGNQLWGSLPDLSVFPFLTRL 292
             S L +LN+  NQL  S+PD  +F  LT L
Sbjct: 492 SLSSLQVLNMASNQL-KSVPD-GIFDRLTSL 520

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	637
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-110
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-54
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-41
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-56
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-53
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-55
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-40
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-47
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-46
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-44
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-42
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-32
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-31
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-27
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-27
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-27
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-24
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-21
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-19
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-14
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-15
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-17
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-14
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-11
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-10
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  347 bits (892), Expect = e-110
 Identities = 155/548 (28%), Positives = 240/548 (43%), Gaps = 40/548 (7%)

Query: 89  SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLN 148
            +  + L+S  L        SS+ S T L  L LS+  ++ S     FK S++L +LDL+
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSLDLS 108

Query: 149 SNQLAGPIPD-YAFSNMTALQHLNLSLNQISAI--SKSFGNMCGLKTLHLFDNNLTGQLP 205
            N L+GP+    +  + + L+ LN+S N +           +  L+ L L  N+++G   
Sbjct: 109 RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 206 ELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSP 265
             ++   GC    L+ L + GNK++G +  ++   +L+ L +  N      P      + 
Sbjct: 169 VGWVLSDGCG--ELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSA- 224

Query: 266 LVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLE 324
           L  L++ GN+L G     +S    L  L++S ++  G +      L  L++L L  N   
Sbjct: 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282

Query: 325 GMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPF-----QLESIGLLHCKLGPHFPK- 378
           G I +        L  +D S N       +G +PPF      LES+ L         P  
Sbjct: 283 GEIPDFLSGACDTLTGLDLSGNHF-----YGAVPPFFGSCSLLESLALSSNNFSGELPMD 337

Query: 379 WLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLD--LSLNYAGYP 436
            L   +    LD+S  E S  +P    +LS +L  L+LS N+  G +L            
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397

Query: 437 GIDLSSNDFEGPVPPVPGNVTSL---NLSNNKFSGPI-SSLCSISGEYFSYLDVSDNLLS 492
            + L +N F G +PP   N + L   +LS N  SG I SSL S+S      L +  N+L 
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS--KLRDLKLWLNMLE 455

Query: 493 GELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIP 552
           GE+P  L+  + L  L L  N+ +G        EIP  L  C  L  I   +N+ +G IP
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTG--------EIPSGLSNCTNLNWISLSNNRLTGEIP 507

Query: 553 AWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVE 612
            WIG  L  LAIL L +N F G+IP  L     +  LD + N  +G IP  +   +  + 
Sbjct: 508 KWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566

Query: 613 KASSNSTI 620
                   
Sbjct: 567 ANFIAGKR 574

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  299 bits (767), Expect = 1e-91
 Identities = 133/554 (24%), Positives = 221/554 (39%), Gaps = 42/554 (7%)

Query: 84  ITSLASLRDLYLASSTL-LSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS--S 140
           + S + L+ L ++S+TL           +    SL +LDLS+  +S +            
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKL---NSLEVLDLSANSISGANVVGWVLSDGCG 178

Query: 141 NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNL 200
            L  L ++ N+++G +     S    L+ L++S N  S      G+   L+ L +  N L
Sbjct: 179 ELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235

Query: 201 TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKF 260
           +G         +      L++L +  N+  G +P      SLQ L L +NK  G  P+  
Sbjct: 236 SGDFSRAISTCT-----ELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENKFTGEIPDFL 289

Query: 261 R-KPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTV-SEGLGRLSKLEFLD 317
                 L  L+L GN  +G++P        L  L +S +  +G +  + L ++  L+ LD
Sbjct: 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349

Query: 318 LFGNSLEGMITESHVSNLSKLKYMDFSFNSL--ALNFSFGWLPPFQLESIGLLHCKLGPH 375
           L  N   G + ES  +  + L  +D S N+    +  +    P   L+ + L +      
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409

Query: 376 FPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGY 435
            P  L +      L +S   +S  +PS    LS  L  L L  N LEG +    +     
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTL 468

Query: 436 PGIDLSSNDFEGPVPPVPGNVTSL---NLSNNKFSGPI-SSLCSISGEYFSYLDVSDNLL 491
             + L  ND  G +P    N T+L   +LSNN+ +G I   +  +     + L +S+N  
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE--NLAILKLSNNSF 526

Query: 492 SGELPDCLLRWQALAVLNLANNNFSGN------------FLTFFVGEIPPSLKKCNELKI 539
           SG +P  L   ++L  L+L  N F+G                F  G+    +K     K 
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586

Query: 540 IDAGDN--KFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
                N  +F G     +   L      ++ S  + G           +  LD S N +S
Sbjct: 587 CHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645

Query: 598 GAIPKCINNLTAMV 611
           G IPK I ++  + 
Sbjct: 646 GYIPKEIGSMPYLF 659

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  290 bits (745), Expect = 2e-88
 Identities = 140/541 (25%), Positives = 224/541 (41%), Gaps = 48/541 (8%)

Query: 84  ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLL 143
           ++   +L  L + SS   S   P L      ++L  LD+S   LS      +   +  L 
Sbjct: 196 VSRCVNLEFLDV-SSNNFSTGIPFLGDC---SALQHLDISGNKLSGDFSRAISTCT-ELK 250

Query: 144 ALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQIS-AISKS-FGNMCGLKTLHLFDNNLT 201
            L+++SNQ  GPIP      + +LQ+L+L+ N+ +  I     G    L  L L  N+  
Sbjct: 251 LLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY 307

Query: 202 GQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEK 259
           G +P  F + S      LE L L  N  +G LP   + +   L+ L L  N+  G  PE 
Sbjct: 308 GAVPPFFGSCS-----LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362

Query: 260 FRKPSP-LVILNLDGNQLWGSLPD---LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEF 315
               S  L+ L+L  N   G +      +    L  L + ++   G +   L   S+L  
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422

Query: 316 LDLFGNSLEGMITESHVSNLSKLKYMDFSFNSL--ALNFSFGWLPPFQLESIGLLHCKLG 373
           L L  N L G I  S + +LSKL+ +    N L   +     ++    LE++ L    L 
Sbjct: 423 LHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYVK--TLETLILDFNDLT 479

Query: 374 PHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLD-----L 428
              P  L +  N  ++ +S+  ++  +P W   L  NL  L LS+N   G +        
Sbjct: 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL-ENLAILKLSNNSFSGNIPAELGDCR 538

Query: 429 SLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPI-SSLCSISGEYFSYLDVS 487
           SL +     +DL++N F G +P       S  ++ N  +G     + +   +   +   +
Sbjct: 539 SLIW-----LDLNTNLFNGTIPAAMFK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592

Query: 488 DNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKF 547
                G   + L R       N+ +  +         G   P+      +  +D   N  
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYG--------GHTSPTFDNNGSMMFLDMSYNML 644

Query: 548 SGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNL 607
           SG IP  IG  +P L IL+L  N   GSIP  +  L  + +LD S N + G IP+ ++ L
Sbjct: 645 SGYIPKEIGS-MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703

Query: 608 T 608
           T
Sbjct: 704 T 704

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  250 bits (641), Expect = 1e-73
 Identities = 133/522 (25%), Positives = 204/522 (39%), Gaps = 61/522 (11%)

Query: 86  SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLAL 145
            L SL+ L L +    +   P      +  +LT LDLS      +   +    S  L +L
Sbjct: 267 PLKSLQYLSL-AENKFTGEIPD-FLSGACDTLTGLDLSGNHFYGAVPPFFGSCS-LLESL 323

Query: 146 DLNSNQLAGPIPDYAFSNMTALQHLNLSLNQIS-AISKSFGNMCG-LKTLHLFDNNLTGQ 203
            L+SN  +G +P      M  L+ L+LS N+ S  + +S  N+   L TL L  NN +G 
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRK 262
           +     NL    KN+L+ L L  N  TG +P  ++  S L  LHL  N L G+ P     
Sbjct: 384 ILP---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 263 PSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGN 321
            S L  L L  N L G +P  L     L  L +  + L G +  GL   + L ++ L  N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500

Query: 322 SLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQ 381
            L G I +  +  L  L  +  S NS       G                   + P  L 
Sbjct: 501 RLTGEIPKW-IGRLENLAILKLSNNSF-----SG-------------------NIPAELG 535

Query: 382 SQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLS 441
             ++  +LD++    +  +P+  +  S       ++ N + G       N         +
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQS-----GKIAANFIAGKRYVYIKNDGMKKECHGA 590

Query: 442 SND--FEGPVPPVPGNVTSL---NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELP 496
            N   F+G        +++    N+++  + G  S     +G    +LD+S N+LSG +P
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG-SMMFLDMSYNMLSGYIP 649

Query: 497 DCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIG 556
             +     L +LNL +N+ SG         IP  +     L I+D   NK  G IP  + 
Sbjct: 650 KEIGSMPYLFILNLGHNDISG--------SIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701

Query: 557 DTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG 598
             L  L  + L +N   G IP         Q   F       
Sbjct: 702 A-LTMLTEIDLSNNNLSGPIPEMG------QFETFPPAKFLN 736

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  196 bits (500), Expect = 6e-54
 Identities = 101/385 (26%), Positives = 160/385 (41%), Gaps = 58/385 (15%)

Query: 240 SSLQELHLFDNKLD---GSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSD 296
             +  + L    L+    +        + L  L L  + + GS+        LT LD+S 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 297 SRLNGTVSEG--LGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSF 354
           + L+G V+    LG  S L+FL++  N+L+     S    L+ L+ +D S NS++     
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 355 GWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYL 414
           GW+                      L+       L IS  +IS  V         NL +L
Sbjct: 170 GWVLSDGCGE---------------LK------HLAISGNKISGDVD--VSRCV-NLEFL 205

Query: 415 NLSHNHLEGTVLDL----SLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL---NLSNNKFS 467
           ++S N+    +  L    +L +     +D+S N   G         T L   N+S+N+F 
Sbjct: 206 DVSSNNFSTGIPFLGDCSALQH-----LDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260

Query: 468 GPI--SSLCSISGEYFSYLDVSDNLLSGELPDCLL-RWQALAVLNLANNNFSGNFLTFFV 524
           GPI    L S+      YL +++N  +GE+PD L      L  L+L+ N+F         
Sbjct: 261 GPIPPLPLKSL-----QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-------- 307

Query: 525 GEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLS 584
           G +PP    C+ L+ +    N FSG +P      +  L +L L  N+F G +P +L  LS
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367

Query: 585 -KIQLLDFSLNSISGAIPKCINNLT 608
             +  LD S N+ SG I   +    
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNP 392

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.9 bits (203), Expect = 2e-16
 Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 15/200 (7%)

Query: 53  PINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMN 112
            I + + K    ++ N       V+      I +    ++ + A + LL         +N
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVY------IKNDGMKKECHGAGN-LLEFQGIRSEQLN 605

Query: 113 SSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNL 172
             ++    +++S           F  + +++ LD++ N L+G IP     +M  L  LNL
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPT-FDNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNL 663

Query: 173 SLNQIS-AISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG 231
             N IS +I    G++ GL  L L  N L G++P+    L+      L  + L  N L+G
Sbjct: 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT-----MLTEIDLSNNNLSG 718

Query: 232 SLPDITEFSSLQELHLFDNK 251
            +P++ +F +       +N 
Sbjct: 719 PIPEMGQFETFPPAKFLNNP 738

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  212 bits (542), Expect = 2e-60
 Identities = 113/539 (20%), Positives = 194/539 (35%), Gaps = 49/539 (9%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
           T     +L +L+L S+++  I            +L  LDLS  GLS++      +   NL
Sbjct: 92  TFAFCTNLTELHLMSNSIQKIKNNPFVKQ---KNLITLDLSHNGLSSTKLGTQVQ-LENL 147

Query: 143 LALDLNSNQLAGPIP-DYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNL 200
             L L++N++      +      ++L+ L LS NQI   S   F  +  L  L L +  L
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 201 TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDI---TEFSSLQELHLFDNKLDGSFP 257
              L E        +  S+  L L  ++L+ +        ++++L  L L  N L+    
Sbjct: 208 GPSLTEKLCLELANT--SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265

Query: 258 EKFRKPSPLVILNLDGNQL-------WGSLPDLSVFPF---LTRLDVSDSRLNGTVSEGL 307
           + F     L    L+ N +          L ++         T+  +S + L        
Sbjct: 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325

Query: 308 GRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLAL----NFSFGWLPPFQLE 363
             L  LE L++  N + G I  +  + L  LKY+  S +  +L    N +F  L    L 
Sbjct: 326 QWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 364 SIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG 423
            + L   K+            +   LD+   EI   +    W    N++ + LS+N    
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 424 TVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISG-EYFS 482
                           L+ N F         ++  L L         SS          +
Sbjct: 445 ----------------LTRNSFALVP-----SLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 483 YLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDA 542
            LD+S+N ++    D L   + L +L+L +NN +  +     G     LK  + L I++ 
Sbjct: 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

Query: 543 GDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP 601
             N F         D L +L I+ L  N  +            ++ L+   N I+    
Sbjct: 544 ESNGFDEIPVEVFKD-LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  212 bits (542), Expect = 2e-60
 Identities = 111/553 (20%), Positives = 197/553 (35%), Gaps = 55/553 (9%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
             T  + L  L +  +T+  +       +     L +L+L    LS  +    F   +NL
Sbjct: 44  NFTRYSQLTSLDVGFNTISKLEPELCQKL---PMLKVLNLQHNELSQLSDK-TFAFCTNL 99

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLT 201
             L L SN +     +  F     L  L+LS N +S+    +   +  L+ L L +N + 
Sbjct: 100 TELHLMSNSIQKIKNN-PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 202 GQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKF 260
               E     +    +SL+ L+L  N++    P        L  L L + +L  S  EK 
Sbjct: 159 ALKSEELDIFAN---SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 261 RKPSP---LVILNLDGNQLWGSLPDLSV---FPFLTRLDVSDSRLNGTVSEGLGRLSKLE 314
                   +  L+L  +QL  +     +   +  LT LD+S + LN   ++    L +LE
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 315 FLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGP 374
           +  L  N+++  +    +  L  ++Y++   +    + S   LP     S   L C    
Sbjct: 276 YFFLEYNNIQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC---- 330

Query: 375 HFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLD----LSL 430
                L+       L++ D +I     + F  L  NL YL+LS++      L     +SL
Sbjct: 331 -----LEH------LNMEDNDIPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSL 378

Query: 431 NYAGYPGIDLSSNDFEGPVPPVPGNVTSL---NLSNNKFSGPISSLCSISGEYFSYLDVS 487
            ++    ++L+ N            +  L   +L  N+    ++       E    + +S
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 488 DNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKF 547
            N       +      +L  L L             V   P   +    L I+D  +N  
Sbjct: 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKN------VDSSPSPFQPLRNLTILDLSNNNI 492

Query: 548 SGTIPAWIGDTLPKLAILSLRSNQ--------FHGSIPRNLCRLSKIQLLDFSLNSISGA 599
           +      +   L KL IL L+ N           G     L  LS + +L+   N     
Sbjct: 493 ANINDDMLEG-LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEI 551

Query: 600 IPKCINNLTAMVE 612
             +   +L  +  
Sbjct: 552 PVEVFKDLFELKI 564

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  211 bits (538), Expect = 9e-60
 Identities = 98/525 (18%), Positives = 178/525 (33%), Gaps = 45/525 (8%)

Query: 114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLS 173
           + S  + D S   L+         + +N+  L+L  NQL   +P   F+  + L  L++ 
Sbjct: 3   TVSHEVADCSHLKLTQV----PDDLPTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVG 57

Query: 174 LNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS 232
            N IS +  +    +  LK L+L  N L+    + F   +     +L  L L  N +   
Sbjct: 58  FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT-----NLTELHLMSNSIQKI 112

Query: 233 LPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF---PF 288
             +   +  +L  L L  N L  +      +   L  L L  N++     +         
Sbjct: 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172

Query: 289 LTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITES--HVSNLSKLKYMDFSFN 346
           L +L++S +++          + +L  L L    L   +TE        + ++ +  S +
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 347 SLA--LNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWF 404
            L+   N +F  L    L  + L +  L               +  +    I        
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 405 WDLSPNLYYLNLSHNHLEGTVLDLSLNY------AGYPG---IDLSSNDFEGPVPPVPGN 455
             L  N+ YLNL  +  + ++   SL                +++  ND  G    +   
Sbjct: 293 HGLF-NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351

Query: 456 VTSL---NLSNNKFSG---PISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLN 509
           + +L   +LSN+  S       +  S++      L+++ N +S    D       L VL+
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 510 LANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRS 569
           L  N                  +    +  I    NK+           +P L  L LR 
Sbjct: 412 LGLNEIGQELT-------GQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLMLRR 463

Query: 570 NQFHG--SIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVE 612
                  S P     L  + +LD S N+I+      +  L  +  
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEI 508

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  187 bits (478), Expect = 2e-51
 Identities = 99/537 (18%), Positives = 176/537 (32%), Gaps = 86/537 (16%)

Query: 65  LSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSS 124
           LS N     I    +  + I + +SL+ L L+S+ +   +     ++     L  L L++
Sbjct: 152 LSNNK----IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI---GRLFGLFLNN 204

Query: 125 CGLSNSAYHWLFKIS--SNLLALDLNSNQLAGPIPDYAFSNM--TALQHLNLSLNQISAI 180
             L  S    L      +++  L L+++QL+       F  +  T L  L+LS N ++ +
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTMLDLSYNNLNVV 263

Query: 181 SK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD---- 235
              SF  +  L+   L  NN+          L      ++  L L  +    S+      
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF-----NVRYLNLKRSFTKQSISLASLP 318

Query: 236 ------ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF--- 286
                       L+ L++ DN + G     F     L  L+L  +           F   
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378

Query: 287 --PFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFS 344
               L  L+++ ++++   S+    L  LE LDL  N +   +T      L  +  +  S
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 345 FNSLALNF--SFGWLPPFQLESIGLLHCKLG--PHFPKWLQSQKNYYFLDISDTEISDAV 400
           +N        SF  +P   L+ + L    L      P   Q  +N   LD+S+  I++  
Sbjct: 439 YNKYLQLTRNSFALVP--SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496

Query: 401 PSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLN 460
                 L   L  L+L HN+L                  L  +   G        ++ L+
Sbjct: 497 DDMLEGL-EKLEILDLQHNNLA----------------RLWKHANPGGPIYFLKGLSHLH 539

Query: 461 LSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFL 520
                                  L++  N       +       L +++L  NN +    
Sbjct: 540 ----------------------ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT--- 574

Query: 521 TFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIP 577
                           LK ++   N  +       G     L  L +R N F  +  
Sbjct: 575 -----LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (399), Expect = 7e-41
 Identities = 89/470 (18%), Positives = 165/470 (35%), Gaps = 49/470 (10%)

Query: 69  SQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLS 128
           +   +       +    +  S+R+L L++S L + +  +   +   T+LT+LDLS   L+
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW-TNLTMLDLSYNNLN 261

Query: 129 NSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNL---------SLNQISA 179
                    +   L    L  N +       +   +  +++LNL         SL  +  
Sbjct: 262 VVGNDSFAWLP-QLEYFFLEYNNIQHLFSH-SLHGLFNVRYLNLKRSFTKQSISLASLPK 319

Query: 180 I-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITE 238
           I   SF  +  L+ L++ DN++ G    +F  L      +L+ L L  +  +        
Sbjct: 320 IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI-----NLKYLSLSNSFTSLRTLTNET 374

Query: 239 F-----SSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD--LSVFPFLTR 291
           F     S L  L+L  NK+     + F     L +L+L  N++   L          +  
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFE 434

Query: 292 LDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHV-SNLSKLKYMDFSFNSLAL 350
           + +S ++           +  L+ L L   +L+ + +       L  L  +D S N++A 
Sbjct: 435 IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA- 493

Query: 351 NFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPN 410
                 +    LE +  L         + L  Q N     +           +   LS +
Sbjct: 494 -----NINDDMLEGLEKL---------EILDLQHNN-LARLWKHANPGGPIYFLKGLS-H 537

Query: 411 LYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL---NLSNNKFS 467
           L+ LNL  N  +   +++  +      IDL  N+       V  N  SL   NL  N  +
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

Query: 468 GPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSG 517
                +   +    + LD+  N        C      +  +N  + N   
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFDC---TCESIAWFVNWINETHTNIPE 644

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  200 bits (511), Expect = 1e-56
 Identities = 102/563 (18%), Positives = 184/563 (32%), Gaps = 67/563 (11%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
           +  S   L+ L L+   + +I   +  S+   + L+ L L+   + + A    F   S+L
Sbjct: 47  SFFSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLILTGNPIQSLALGA-FSGLSSL 102

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA--ISKSFGNMCGLKTLHLFDNNL 200
             L      LA         ++  L+ LN++ N I +  + + F N+  L+ L L  N +
Sbjct: 103 QKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 201 TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEK- 259
                     L      +L  L L  N +    P   +   L +L L +N    +  +  
Sbjct: 162 QSIYCTDLRVLHQMPLLNLS-LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220

Query: 260 FRKPSPLVILNLDGNQLWG----SLPDLSVFPFLTRLDVSDSRLN------GTVSEGLGR 309
            +  + L +  L   +          D S    L  L + + RL         + +    
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNC 280

Query: 310 LSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLH 369
           L+ +    L   ++E +   S+      L+ ++  F                L+ +    
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK------LKSLKRLTFTS 334

Query: 370 CKLGPHFPKWLQSQKNYYFLDISDTEIS--DAVPSWFWDLSPNLYYLNLSHNHLEG---- 423
            K G  F        +  FLD+S   +S         +    +L YL+LS N +      
Sbjct: 335 NKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVITMSSN 391

Query: 424 -------TVLDLS---LNYAGYPGI----------DLSSNDFEGPVPPVPGNVTSL---N 460
                    LD     L       +          D+S          +   ++SL    
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 461 LSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFL 520
           ++ N F               ++LD+S   L    P       +L VLN+++NNF     
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS--- 508

Query: 521 TFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRN- 579
                      K  N L+++D   N    +    +      LA L+L  N F  +     
Sbjct: 509 -----LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQS 563

Query: 580 -LCRLSKIQLLDFSLNSISGAIP 601
            L  +   + L   +  +  A P
Sbjct: 564 FLQWIKDQRQLLVEVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  191 bits (486), Expect = 5e-53
 Identities = 86/478 (17%), Positives = 162/478 (33%), Gaps = 49/478 (10%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF 196
           +  +   LDL+ N L       +F +   LQ L+LS  +I  I   ++ ++  L TL L 
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDG- 254
            N +       F  LS     SL+ L      L       I    +L+EL++  N +   
Sbjct: 85  GNPIQSLALGAFSGLS-----SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 255 SFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLN------GTVSEGLG 308
             PE F   + L  L+L  N++            L ++ + +  L+        +  G  
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 309 RLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLL 368
           +  +L  L L  N     + ++ +  L+ L+             +        LE +  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 369 HCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDL 428
             +                   ++  +         ++   N+   +L    +E  V D 
Sbjct: 258 TIE----------------EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDF 300

Query: 429 SLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSD 488
           S N+ G+  ++L +  F         ++  L  ++NK     S +   S     +LD+S 
Sbjct: 301 SYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS---LEFLDLSR 356

Query: 489 NLLS--GELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNK 546
           N LS  G          +L  L+L+ N             +  +     +L+ +D   + 
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT---------MSSNFLGLEQLEHLDFQHSN 407

Query: 547 FSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCI 604
                   +  +L  L  L +       +       LS +++L  + NS        I
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  126 bits (319), Expect = 9e-31
 Identities = 58/365 (15%), Positives = 107/365 (29%), Gaps = 43/365 (11%)

Query: 65  LSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSS 124
           L          +       +  L +L       + L       +   N  T+++   L S
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 125 CGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSF 184
             +        F  +     L+L + +  G  P     ++  L   +           S 
Sbjct: 292 VTIERVKD---FSYNFGWQHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAF----SE 343

Query: 185 GNMCGLKTLHLFDNNLT--GQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSL 242
            ++  L+ L L  N L+  G   +     +     SL+ L L  N +     +      L
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-----SLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 243 QELHLFDNKLDGSFPEK-FRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLN 300
           + L    + L        F     L+ L++       +     +    L  L ++ +   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 301 GTVSEG-LGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPP 359
                     L  L FLDL    LE +   +  ++LS L+ ++ S N             
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-FNSLSSLQVLNMSHN------------- 504

Query: 360 FQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHN 419
               S+               +   +   LD S   I  +          +L +LNL+ N
Sbjct: 505 -NFFSL----------DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

Query: 420 HLEGT 424
               T
Sbjct: 554 DFACT 558

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  198 bits (505), Expect = 2e-55
 Identities = 85/564 (15%), Positives = 173/564 (30%), Gaps = 82/564 (14%)

Query: 65  LSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSS 124
           L  + +     +F      I++  S                         + L    ++S
Sbjct: 112 LGSHGEKVNERLFG--PKGISANMSDEQKQK-MRMHYQKTFVDYDPREDFSDLIKDCINS 168

Query: 125 CGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA----- 179
                S      +I+     +   SN +   +   A   +T L+   +  +   A     
Sbjct: 169 DPQQKSIKK-SSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICE 225

Query: 180 ---------------ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKL 224
                              + N+  L  + +++     +LP     L       ++++ +
Sbjct: 226 AWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP-----EMQLINV 280

Query: 225 GGNKLTG---------SLPDITEFSSLQELHLFDNKL-DGSFPEKFRKPSPLVILNLDGN 274
             N+            +L D      +Q +++  N L         +K   L +L    N
Sbjct: 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 275 QLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSN 334
           QL G LP       L  L+++ +++    +   G   ++E L    N L+ +       +
Sbjct: 341 QLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400

Query: 335 LSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDT 394
           +S +  +DFS+N +        +     + +                   N   +++S+ 
Sbjct: 401 VSVMSAIDFSYNEIGS------VDGKNFDPL-----------DPTPFKGINVSSINLSNN 443

Query: 395 EISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPG 454
           +IS      F   S  L  +NL  N L      +  N       +  +            
Sbjct: 444 QISKFPKELFSTGS-PLSSINLMGNMLTE----IPKNSLKDENENFKNT----------Y 488

Query: 455 NVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANN- 513
            +TS++L  NK +       + +  Y   +D+S N  S   P   L    L    + N  
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547

Query: 514 NFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFH 573
           +  GN       E P  +  C  L  +  G N     +   I    P +++L ++ N   
Sbjct: 548 DAQGNRTL---REWPEGITLCPSLTQLQIGSNDIR-KVNEKI---TPNISVLDIKDNPNI 600

Query: 574 GSIPRNLCRLSKIQLLDFSLNSIS 597
                 +C   +  +     +   
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  175 bits (445), Expect = 4e-47
 Identities = 73/530 (13%), Positives = 160/530 (30%), Gaps = 70/530 (13%)

Query: 110 SMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQH 169
           S+NS+  +T L L   G S      + +++  L  L L S+        +    ++A   
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLT-ELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 170 LNLSLNQISAISKSF-GNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK 228
                       K+F           L  + +     +  +  S         +    N 
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 229 LTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFP 287
           +T     +   + L++ ++ ++                   N +  Q + +         
Sbjct: 195 ITFVSKAVMRLTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 288 FLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITE-------SHVSNLSKLKY 340
            LT ++V +      +   L  L +++ +++  N               +      K++ 
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 341 MDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAV 400
           +   +N               L++  +            LQ  K    L+    ++   +
Sbjct: 310 IYIGYN--------------NLKTFPV---------ETSLQKMKKLGMLECLYNQLEGKL 346

Query: 401 PSWFWDLSPNLYYLNLSHNHLEGTVLDL-----SLNYAGYPGIDLSSNDFEGPVPPVPG- 454
           P+ F      L  LNL++N +     +       +       +  + N  +  +P +   
Sbjct: 347 PA-FGSEI-KLASLNLAYNQITEIPANFCGFTEQVEN-----LSFAHNKLKY-IPNIFDA 398

Query: 455 ----NVTSLNLSNNKFSG-PISSLCSISGEYFS-----YLDVSDNLLSGELPDCLLRWQA 504
                +++++ S N+       +   +    F       +++S+N +S    +       
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP 458

Query: 505 LAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAI 564
           L+ +NL  N  +         +   + K    L  ID   NK +     +   TLP L  
Sbjct: 459 LSSINLMGNMLTEIPKNSL-KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVG 517

Query: 565 LSLRSNQFHGSIPRNLCRLSKIQLL------DFSLNSISGAIPKCINNLT 608
           + L  N F    P      S ++        D   N      P+ I    
Sbjct: 518 IDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  154 bits (392), Expect = 4e-40
 Identities = 62/506 (12%), Positives = 133/506 (26%), Gaps = 90/506 (17%)

Query: 154 GPIPDYAFSNMTALQHLNLSLNQIS-AISKSFGNMCGLKTLHLFDNNLTGQLPELFL--- 209
           G  P  + ++   +  L+L     S  +  + G +  L+ L L  +              
Sbjct: 70  GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129

Query: 210 ----------------------NLSGCSKNSLEILKLGGNKLTGSLP-DITEFSSLQELH 246
                                        + L    +  +    S+           ++ 
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIG 189

Query: 247 LFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEG 306
              N +     +   + + L    +  +                  +   ++   T    
Sbjct: 190 QLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENI----CEAWENENSEYAQQYKTEDLK 244

Query: 307 LGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIG 366
              L  L  ++++       +    +  L +++ ++ + N                  I 
Sbjct: 245 WDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRG----------------IS 287

Query: 367 LLHCKLGPHFPKWLQSQKNYYFLDISDTEISD-AVPSWFWDLSPNLYYLNLSHNHLEGTV 425
               K            +    + I    +    V +    +   L  L   +N LEG +
Sbjct: 288 GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMK-KLGMLECLYNQLEGKL 346

Query: 426 LDL----SLNYAGYPGIDLSSNDFEGPVPPVPG---NVTSLNLSNNKFSGPISSLCSISG 478
                   L       ++L+ N          G    V +L+ ++NK     +   + S 
Sbjct: 347 PAFGSEIKLAS-----LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401

Query: 479 EYFSYLDVSDNLLSG-------ELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSL 531
              S +D S N +          L     +   ++ +NL+NN  S               
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF--------PKELF 453

Query: 532 KKCNELKIIDAGDNKFSG-------TIPAWIGDTLPKLAILSLRSNQFHGSIPRNL--CR 582
              + L  I+   N  +               +    L  + LR N+    +  +     
Sbjct: 454 STGSPLSSINLMGNMLTEIPKNSLKDENENFKN-TYLLTSIDLRFNKLT-KLSDDFRATT 511

Query: 583 LSKIQLLDFSLNSISGAIPKCINNLT 608
           L  +  +D S NS S   P    N +
Sbjct: 512 LPYLVGIDLSYNSFSK-FPTQPLNSS 536

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  152 bits (386), Expect = 3e-39
 Identities = 67/493 (13%), Positives = 130/493 (26%), Gaps = 117/493 (23%)

Query: 51  ISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSS 110
               N              Q           +   +L  L D+ + +   L+     L +
Sbjct: 218 FVAENICEAWENENSEYAQQYKTE------DLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 111 MNSSTSLTLLDLSSCGLSNSAYHWL-------FKISSNLLALDLNSNQLA-GPIPDYAFS 162
           +     + L++++     +               +   +  + +  N L   P+   +  
Sbjct: 272 L---PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET-SLQ 327

Query: 163 NMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEIL 222
            M  L  L    NQ+     +FG+   L +L+L  N +T                 +E L
Sbjct: 328 KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTE-----QVENL 382

Query: 223 KLGGNKLTGSLPDITEF---SSLQELHLFDNKLDGSFPEKFRKPSP-------LVILNLD 272
               NKL   +P+I +    S +  +    N++     + F    P       +  +NL 
Sbjct: 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441

Query: 273 GNQLWGSLPD-LSVFPFLTRLDVSDSRLNG-------TVSEGLGRLSKLEFLDLFGNSLE 324
            NQ+     +  S    L+ +++  + L           +E       L  +DL  N L 
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501

Query: 325 GMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQK 384
            +  +   + L  L  +D S+N                                      
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYN--------------SFSKF------------------- 528

Query: 385 NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSND 444
                           P+   + S  L    + +                    D   N 
Sbjct: 529 ----------------PTQPLNSS-TLKGFGIRNQ------------------RDAQGNR 553

Query: 445 FEGPVPPVPGNVTSL---NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLR 501
                P       SL    + +N        +        S LD+ DN         +  
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRKVNEKITP----NISVLDIKDNPNISIDLSYVCP 609

Query: 502 WQALAVLNLANNN 514
           +    +  L  + 
Sbjct: 610 YIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 22/166 (13%), Positives = 41/166 (24%), Gaps = 35/166 (21%)

Query: 76  VFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLS------- 128
                     +   L  + L  + L  +         +   L  +DLS    S       
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKL--SDDFRATTLPYLVGIDLSYNSFSKFPTQPL 533

Query: 129 NSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS----- 183
           NS+    F I +     D   N+     P+   +   +L  L +  N I  +++      
Sbjct: 534 NSSTLKGFGIRNQR---DAQGNRTLREWPE-GITLCPSLTQLQIGSNDIRKVNEKITPNI 589

Query: 184 -----------------FGNMCGLKTLHLFDNNLTGQLPELFLNLS 212
                                       LF +          L++ 
Sbjct: 590 SVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  181 bits (462), Expect = 1e-48
 Identities = 86/566 (15%), Positives = 171/566 (30%), Gaps = 77/566 (13%)

Query: 49  LAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSL 108
             +S       +L   +S+  ++ I   +      +     L    L    +     P +
Sbjct: 359 ETVSGRLFGDEELTPDMSEERKHRIRMHYKKM--FLDYDQRLNLSDLLQDAINRN--PEM 414

Query: 109 SSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS--SNLLALDLNSNQLAGPIPDYAFSNMTA 166
             +   + ++L D     L+N        I   + L  +   ++             +  
Sbjct: 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIA-----VDW 469

Query: 167 LQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGG 226
               +    Q      S+ N+  L  + L++     QLP+   +L       L+ L +  
Sbjct: 470 EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-----ELQSLNIAC 524

Query: 227 NKLTG---------SLPD-ITEFSSLQELHLFDNKLDGSFPEK-FRKPSPLVILNLDGNQ 275
           N+             L D       +Q  ++  N L+        +K   L +L+   N+
Sbjct: 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

Query: 276 LWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNL 335
           +   L        LT L +  +++     +      ++E L    N L+ +    +  ++
Sbjct: 585 V-RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643

Query: 336 SKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTE 395
             +  +DFS+N +      G        S+                   N   + +S  E
Sbjct: 644 YVMGSVDFSYNKI------GSEGRNISCSMDDYKGI-------------NASTVTLSYNE 684

Query: 396 ISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGN 455
           I       F      +  + LS+N +                  +  N    P      N
Sbjct: 685 IQKFPTELFATG-SPISTIILSNNLMT----------------SIPENSL-KPKDGNYKN 726

Query: 456 VTSL---NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLAN 512
              L   +L  NK +       + +  Y S +DVS N  S   P   L    L    + +
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRH 785

Query: 513 N-NFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQ 571
             +  GN +     + P  +  C  L  +  G N     +   +    P+L IL +  N 
Sbjct: 786 QRDAEGNRIL---RQWPTGITTCPSLIQLQIGSNDIR-KVDEKL---TPQLYILDIADNP 838

Query: 572 FHGSIPRNLCRLSKIQLLDFSLNSIS 597
                  ++C   +  +     +   
Sbjct: 839 NISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  172 bits (437), Expect = 2e-45
 Identities = 78/548 (14%), Positives = 163/548 (29%), Gaps = 83/548 (15%)

Query: 84  ITSLASLRDLYLASSTLLSINRP-SLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS-SN 141
           I  L  L+ L   + +     R      +    S                 +  +++ S+
Sbjct: 343 IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402

Query: 142 LLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLT 201
           LL   +N N    PI   +  ++   Q  NL+ N+I+ ISK+   +  L+ ++  ++  T
Sbjct: 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLT-NRITFISKAIQRLTKLQIIYFANSPFT 461

Query: 202 GQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKF 260
                +                    K   +     +    L ++ L++       P+  
Sbjct: 462 YDNIAVDWED----------ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL 511

Query: 261 RKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFG 320
                L  LN+  N+   +    + +  L               +      K++   +  
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLA--------------DDEDTGPKIQIFYMGY 557

Query: 321 NSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPF----QLESIGLLHCKLGPHF 376
           N+LE     + +  + KL  +D   N +        L  F    +L  + L + ++    
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKVRH------LEAFGTNVKLTDLKLDYNQIE-EI 610

Query: 377 PKWL-QSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGY 435
           P+           L  S  ++      +       +  ++ S+N +              
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS------------ 658

Query: 436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLS--- 492
                  N           N +++ LS N+     + L + +G   S + +S+NL++   
Sbjct: 659 ----EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA-TGSPISTIILSNNLMTSIP 713

Query: 493 ----GELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCN--ELKIIDAGDNK 546
                           L  ++L  N  +          +    +      L  +D   N 
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT---------SLSDDFRATTLPYLSNMDVSYNC 764

Query: 547 FSGTIPAWIGDTLPKLAILSLR------SNQFHGSIPRNLCRLSKIQLLDFSLNSISGAI 600
           FS + P    +   +L    +R       N+     P  +     +  L    N I    
Sbjct: 765 FS-SFPTQPLN-SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD 822

Query: 601 PKCINNLT 608
            K    L 
Sbjct: 823 EKLTPQLY 830

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  170 bits (431), Expect = 1e-44
 Identities = 81/522 (15%), Positives = 171/522 (32%), Gaps = 81/522 (15%)

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMC-GLKTLHLFD 197
           +  +  L L      G +PD A   +T L+ L+   +  +   + FG+            
Sbjct: 322 NGRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380

Query: 198 NNLTGQLPELF------LNLSGCSKN-----------------SLEILKLGG--NKLTGS 232
           + +     ++F      LNLS   ++                 SL+  ++G   N++T  
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 233 LPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTR 291
              I   + LQ ++  ++                   N D  + + +     S    LT 
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 292 LDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESH--------VSNLSKLKYMDF 343
           +++ +      + + L  L +L+ L++  N                       K++    
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 344 SFNSLA---LNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAV 400
            +N+L     + S   +   +L  +  +H K+     +   +      L +   +I + +
Sbjct: 556 GYNNLEEFPASASLQKMV--KLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-I 610

Query: 401 PSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLN 460
           P  F   +  +  L  SHN L+      +          +               + S++
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK-------SVY-------------VMGSVD 650

Query: 461 LSNNKFSGPISSLCSISGEYF----SYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFS 516
            S NK      ++     +Y     S + +S N +     +       ++ + L+NN  +
Sbjct: 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710

Query: 517 GNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSI 576
            +     +     + K    L  ID   NK +     +   TLP L+ + +  N F  S 
Sbjct: 711 -SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SF 768

Query: 577 PRNLCRLSKIQLL------DFSLNSISGAIPKCINNLTAMVE 612
           P      S+++        D   N I    P  I    ++++
Sbjct: 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.9 bits (241), Expect = 6e-21
 Identities = 45/370 (12%), Positives = 102/370 (27%), Gaps = 62/370 (16%)

Query: 269 LNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMIT 328
           L+    + +    + ++       +             L    ++  L L G   +G + 
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP 340

Query: 329 ESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKW--------- 379
           ++ +  L++LK + F  +S  ++           +       ++  H+ K          
Sbjct: 341 DA-IGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 380 --------------LQSQKNYYFLDISDTEISD------AVPSWFWDLSPNLYYLNLSHN 419
                         ++  K    + + DT+I +       +      L+  L  +  +++
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLT-KLQIIYFANS 458

Query: 420 HLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGE 479
                 + +          +               N+  L                    
Sbjct: 459 PFTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKDL-------------------- 493

Query: 480 YFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSG-NFLTFFVGEIPPSLKKCNELK 538
             + +++ +     +LPD L     L  LN+A N       L      +        +++
Sbjct: 494 --TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 539 IIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG 598
           I   G N       +     + KL +L    N+             K+  L    N I  
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE 609

Query: 599 AIPKCINNLT 608
            IP+     T
Sbjct: 610 -IPEDFCAFT 618

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  173 bits (441), Expect = 7e-47
 Identities = 92/539 (17%), Positives = 178/539 (33%), Gaps = 57/539 (10%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
           + ++ + L+ L L+   + +I   +   +     L+ L L+   + + +    F   ++L
Sbjct: 51  SFSNFSELQWLDLSRCEIETIEDKAWHGL---HHLSNLILTGNPIQSFSPGS-FSGLTSL 106

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS--KSFGNMCGLKTLHLFDNNL 200
             L     +LA  +  +    +  L+ LN++ N I +      F N+  L  + L  N +
Sbjct: 107 ENLVAVETKLAS-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165

Query: 201 TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEK- 259
                     L          L +  N +        +   L EL L  N    +  +  
Sbjct: 166 QTITVNDLQFLRENP-QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTC 224

Query: 260 FRKPSPLVILNLDGNQLWG----SLPDLSVFPFLTRLDVSDSRLNGTVSEGLGR-----L 310
            +  + L +  L   +        + + S+   L  + + + RL  T            L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 311 SKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHC 370
           + +  + L G S++ +     V    K + +      L   F    LP   L+S+ L   
Sbjct: 285 ANVSAMSLAGVSIKYL---EDVPKHFKWQSLSIIRCQLK-QFPTLDLP--FLKSLTLTMN 338

Query: 371 KLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLS-PNLYYLNLSHNHLEGTVLDLS 429
           K          +  +  +LD+S   +S +    + DL   +L +L+LS N          
Sbjct: 339 KG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI------- 389

Query: 430 LNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDN 489
                     + S +F G        +  L+  ++           +S E   YLD+S  
Sbjct: 390 ----------IMSANFMGLE-----ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 490 LLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSG 549
               +     L   +L  L +A N+F  N L                L  +D    +   
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL-------SNVFANTTNLTFLDLSKCQLEQ 487

Query: 550 TIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLT 608
                    L +L +L++  N        +  +L  +  LD S N I  +     +   
Sbjct: 488 ISWGVFDT-LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  169 bits (430), Expect = 3e-45
 Identities = 93/476 (19%), Positives = 163/476 (34%), Gaps = 46/476 (9%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF 196
           I S+   +DL+ N L   +  Y+FSN + LQ L+LS  +I  I  K++  +  L  L L 
Sbjct: 30  IPSSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDG- 254
            N +    P  F  L+     SLE L     KL       I +  +L++L++  N +   
Sbjct: 89  GNPIQSFSPGSFSGLT-----SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

Query: 255 SFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLN------GTVSEGLG 308
             P  F   + LV ++L  N +     +     FL      +  L+        + +   
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVN--DLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 309 RLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLL 368
           +  KL  L L GN     I ++ + NL+ L              +     P  +E +  +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 369 HCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDL 428
                                 ++ T         F  L+ N+  ++L+   +    L+ 
Sbjct: 262 TIDE----------------FRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSI--KYLED 302

Query: 429 SLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSD 488
              +  +  + +     +         + SL L+ NK S     +   S    SYLD+S 
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPS---LSYLDLSR 359

Query: 489 NLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFS 548
           N LS     C      L   +L + + S N        +  +     EL+ +D   +   
Sbjct: 360 NALS-FSGCCSYSD--LGTNSLRHLDLSFNGAI----IMSANFMGLEELQHLDFQHSTLK 412

Query: 549 GTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCI 604
                    +L KL  L +               L+ +  L  + NS        +
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 96.6 bits (241), Expect = 4e-21
 Identities = 47/215 (21%), Positives = 74/215 (34%), Gaps = 17/215 (7%)

Query: 65  LSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSS 124
           LS+N+    ++    C  +     SLR L L+ +  + ++    ++      L  LD   
Sbjct: 357 LSRNA----LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS----ANFMGLEELQHLDFQH 408

Query: 125 CGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI--SK 182
             L        F     LL LD++         D  F  +T+L  L ++ N       S 
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 183 SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSS 241
            F N   L  L L    L      +F  L       L++L +  N L         +  S
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLH-----RLQLLNMSHNNLLFLDSSHYNQLYS 522

Query: 242 LQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQL 276
           L  L    N+++ S       P  L   NL  N +
Sbjct: 523 LSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
               L SL  L +A ++       ++ +    T+LT LDLS C L   ++  +F     L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANT--TNLTFLDLSKCQLEQISWG-VFDTLHRL 499

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLT 201
             L+++ N L   +    ++ + +L  L+ S N+I             L   +L +N++ 
Sbjct: 500 QLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  171 bits (435), Expect = 5e-46
 Identities = 97/535 (18%), Positives = 168/535 (31%), Gaps = 59/535 (11%)

Query: 114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLS 173
             S   L+ S   L        F    NL  LDL   Q+   I +  F +   L  L L+
Sbjct: 32  PNSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLT 89

Query: 174 LNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG- 231
            N +  ++  +      LK L      ++        N       +LE L LG N ++  
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK-----TLESLYLGSNHISSI 144

Query: 232 SLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPL--VILNLDGNQLWGSLPDLSVFPFL 289
            LP       L+ L   +N +     E          + LNL+GN + G  P        
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 290 TRLDVSDSRLNGTVSEGLG--RLSKLEFLDLFGNSLEGMITESHVSNLSK--LKYMDFSF 345
             L+   ++    + +GL    +  L          E  I+ +    L +  ++ ++   
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED-ISPAVFEGLCEMSVESINLQK 263

Query: 346 NSLA--LNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSW 403
           +      + +F       L+ + L    L    P  L        L +S  +  +     
Sbjct: 264 HYFFNISSNTFHCFS--GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS 320

Query: 404 FWDLSPNLYYLNLSHNHLEG-------------TVLDLSLNYAGYPG------------- 437
             +  P+L +L++  N                   LDLS +                   
Sbjct: 321 ASNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 438 -IDLSSNDFEGPVPPVPGNVTSL---NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSG 493
            ++LS N+              L   +L+  +     +     +      L++S +LL  
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 494 ELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPA 553
                     AL  LNL  N+F          +   SL+    L+I+       S     
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPK-----GNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494

Query: 554 WIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLT 608
                L  +  + L  N+   S    L  L  I  L+ + N IS  +P  +  L+
Sbjct: 495 AFTS-LKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  167 bits (425), Expect = 1e-44
 Identities = 91/498 (18%), Positives = 164/498 (32%), Gaps = 47/498 (9%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF 196
           + ++   L+ + N L   I +  FS +  L  L+L+  QI  I   +F +   L TL L 
Sbjct: 31  LPNSTECLEFSFNVLPT-IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGS 255
            N L                 +L+ L      ++      +    +L+ L+L  N +   
Sbjct: 90  ANPLIFMAETALSGPK-----ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 256 FPEKFRKPSPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDSRLN-GTVSEGLGRLSKL 313
              K      L +L+   N +      D+S     T L ++ +  +   +  G    +  
Sbjct: 145 KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204

Query: 314 EFLDLFGNSLEGMITESHV-SNLSKLKYMDFSFNSLA--LNFSFGWLPPFQLESIGLLHC 370
           + L+  G     +I +    S +  L    F            F  L    +ESI L   
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 371 KLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG------- 423
                             LD++ T +S+ +PS    L   L  L LS N  E        
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGL-STLKKLVLSANKFENLCQISAS 322

Query: 424 -----TVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISG 478
                T L +  N      ++L +   E        N+  L+LS++           +  
Sbjct: 323 NFPSLTHLSIKGNTK---RLELGTGCLEN-----LENLRELDLSHDDIETSDCCNLQLRN 374

Query: 479 -EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNEL 537
             +   L++S N       +       L +L+LA              +     +  + L
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK-------DAQSPFQNLHLL 427

Query: 538 KIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSI---PRNLCRLSKIQLLDFSLN 594
           K+++   +    +        LP L  L+L+ N F         +L  L ++++L  S  
Sbjct: 428 KVLNLSHSLLDISSEQLFDG-LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 595 SISGAIPKCINNLTAMVE 612
            +S        +L  M  
Sbjct: 487 DLSSIDQHAFTSLKMMNH 504

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  167 bits (425), Expect = 1e-44
 Identities = 99/553 (17%), Positives = 166/553 (30%), Gaps = 87/553 (15%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
           T + L +L  L L    +  I+  +  S      L  L L++  L   A          L
Sbjct: 52  TFSRLINLTFLDLTRCQIYWIHEDTFQSQ---HRLDTLVLTANPLIFMAETA-LSGPKAL 107

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLT 201
             L      ++  I      N   L+ L L  N IS+I          LK L   +N + 
Sbjct: 108 KHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 202 GQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPE--K 259
               E   +L   +      L L GN + G  P   + +  Q L+    +      +  K
Sbjct: 167 YLSKEDMSSLQQAT---NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 260 FRKPSPLVILNLDGNQLWGSLPDLSVFPF---LTRLDVSDSRLNGTVSEGLGRLSKLEFL 316
                 L +   +        P +        +  +++         S      S L+ L
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283

Query: 317 DLFGNSLEGMITESHVSNLSKLKYMDFSFNSLAL--NFSFGWLPPFQLESIGLLHCKLGP 374
           DL    L  +   S +  LS LK +  S N        S    P   L  + +       
Sbjct: 284 DLTATHLSEL--PSGLVGLSTLKKLVLSANKFENLCQISASNFP--SLTHLSIKGNTK-- 337

Query: 375 HFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAG 434
                                  +       +L  NL  L+LSH+ +E            
Sbjct: 338 ---------------------RLELGTGCLENL-ENLRELDLSHDDIET----------- 364

Query: 435 YPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVSD 488
               D  +            ++ SLNLS N+         S+  E F        LD++ 
Sbjct: 365 ---SDCCNLQLRNL-----SHLQSLNLSYNEPL-------SLKTEAFKECPQLELLDLAF 409

Query: 489 NLLSGELPDCLLRW-QALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKF 547
             L  +      +    L VLNL+++    +                  L+ ++   N F
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS--------SEQLFDGLPALQHLNLQGNHF 461

Query: 548 SGTIPAWIG--DTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCIN 605
                       TL +L IL L               L  +  +D S N ++ +  + ++
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 606 NLTAMVEKASSNS 618
           +L  +    +SN 
Sbjct: 522 HLKGIYLNLASNH 534

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  160 bits (406), Expect = 4e-42
 Identities = 84/504 (16%), Positives = 166/504 (32%), Gaps = 52/504 (10%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
            ++   +L+ L+   + + SI+   L +     +L  L L S  +S+         +  L
Sbjct: 100 ALSGPKALKHLFFIQTGISSIDFIPLHNQ---KTLESLYLGSNHISSIKLP-KGFPTEKL 155

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQH--LNLSLNQISAISKSFGNMCGLKTLHLFDNNL 200
             LD  +N +   +     S++    +  LNL+ N I+ I     +    ++L+      
Sbjct: 156 KVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214

Query: 201 TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEF---SSLQELHLFDNKLDGSFP 257
              + +    L   +  SL +            P + E     S++ ++L  +       
Sbjct: 215 LLVIFK---GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271

Query: 258 EKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLD 317
             F   S L  L+L    L      L     L +L +S ++              L  L 
Sbjct: 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331

Query: 318 LFGNSLEGMITESHVSNLSKLKYMDFSFNSL----ALNFSFGWLPPFQLESIGLLHCKLG 373
           + GN+    +    + NL  L+ +D S + +      N     L    L+S+ L + +  
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS--HLQSLNLSYNEPL 389

Query: 374 PHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYA 433
               +  +       LD++ T +        +     L  LNLSH+ L+           
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI---------- 439

Query: 434 GYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSI--SGEYFSYLDVSDNLL 491
                  S   F+G        +  LNL  N F        +   +      L +S   L
Sbjct: 440 ------SSEQLFDGLP-----ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL 488

Query: 492 SGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTI 551
           S          + +  ++L++N  +                   +   ++   N  S  +
Sbjct: 489 SSIDQHAFTSLKMMNHVDLSHNRLTS---------SSIEALSHLKGIYLNLASNHISIIL 539

Query: 552 PAWIGDTLPKLAILSLRSNQFHGS 575
           P+ +   L +   ++LR N    +
Sbjct: 540 PSLL-PILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  116 bits (293), Expect = 2e-27
 Identities = 63/283 (22%), Positives = 115/283 (40%), Gaps = 18/283 (6%)

Query: 84  ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLL 143
           +  L++L+ L L+++   ++ + S S+     SLT L +              +   NL 
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNF---PSLTHLSIKGNTKRLELGTGCLENLENLR 353

Query: 144 ALDLNSNQLAG-PIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLT 201
            LDL+ + +      +    N++ LQ LNLS N+  ++ +++F     L+ L L    L 
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

Query: 202 GQLPE-LFLNLSGCSKNSLEILKLGGNKLTGSLPDI-TEFSSLQELHLFDNKL---DGSF 256
            +  +  F NL       L++L L  + L  S   +     +LQ L+L  N     +   
Sbjct: 414 VKDAQSPFQNLH-----LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468

Query: 257 PEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEF 315
               +    L IL L    L        +    +  +D+S +RL  +  E L  L  + +
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y 527

Query: 316 LDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLP 358
           L+L  N +   I  S +  LS+ + ++   N L    S  +  
Sbjct: 528 LNLASNHISI-ILPSLLPILSQQRTINLRQNPLDCTCSNIYFL 569

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 97.8 bits (244), Expect = 2e-21
 Identities = 60/377 (15%), Positives = 114/377 (30%), Gaps = 52/377 (13%)

Query: 268 ILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMI 327
             N +   L   +P  ++      L+ S + L    +    RL  L FLDL    +  + 
Sbjct: 16  TYNCENLGL-NEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 328 TESHVSNLSKLKYMDFSFNSLA--LNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKN 385
            ++   +  +L  +  + N L      +        L+ +  +   +       L +QK 
Sbjct: 74  EDT-FQSQHRLDTLVLTANPLIFMAETALSGPK--ALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 386 YYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG------------TVLDLSLNY- 432
              L +    IS       +     L  L+  +N +              T L L+LN  
Sbjct: 131 LESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 433 ------------AGYPGIDLSSNDFEGPVPPVPGNVT-----SLNLSNNKFSGPISS-LC 474
                       A +  ++         +     N T          +        +   
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249

Query: 475 SISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKC 534
            +       +++  +       +    +  L  L+L   + S         E+P  L   
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS---------ELPSGLVGL 300

Query: 535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRN-LCRLSKIQLLDFSL 593
           + LK +    NKF   +        P L  LS++ N     +    L  L  ++ LD S 
Sbjct: 301 STLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

Query: 594 NSI--SGAIPKCINNLT 608
           + I  S      + NL+
Sbjct: 360 DDIETSDCCNLQLRNLS 376

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  163 bits (413), Expect = 2e-42
 Identities = 111/539 (20%), Positives = 196/539 (36%), Gaps = 71/539 (13%)

Query: 86  SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYH-WLFKISSNLLA 144
           +L +LR L L SS +  ++  +   +     L  L L  CGLS++      F+    L  
Sbjct: 71  NLPNLRILDLGSSKIYFLHPDAFQGL---FHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGN--MCGLKTLHLFDNNLT 201
           LDL+ NQ+       +F  + +L+ ++ S NQI  + +          L    L  N+L 
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 202 GQLPELFLNLSGCSKN-SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKF 260
            ++   +       +N  LEIL + GN  T  +              F N +  S     
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG-----------NFSNAISKSQAFSL 236

Query: 261 RKPSPLVILNLDGNQLWGSLPDLSVF-----PFLTRLDVSDSRLNGTVSEGLGRLSKLEF 315
                ++      + +    PD + F       +  LD+S   +    S     L  L+ 
Sbjct: 237 ILAHHIMGAGFGFHNI--KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKV 294

Query: 316 LDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLAL--NFSFGWLPPFQLESIGLLHCKLG 373
           L+L  N +   I +     L  L+ ++ S+N L    + +F  LP  ++  I L    + 
Sbjct: 295 LNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP--KVAYIDLQKNHIA 351

Query: 374 PHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG-TVLDLSLNY 432
               +  +  +    LD+ D  ++           P++  + LS N L     ++L+ N 
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKLVTLPKINLTANL 405

Query: 433 AGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLS 492
                I LS N  E             NL    F   +  L          L ++ N  S
Sbjct: 406 -----IHLSENRLE-------------NLDILYFLLRVPHL--------QILILNQNRFS 439

Query: 493 GELPDCLLRW-QALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTI 551
               D       +L  L L  N     + T    ++   L     L+++    N  + ++
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH---LQVLYLNHNYLN-SL 495

Query: 552 PAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAM 610
           P  +   L  L  LSL SN+       +L   + +++LD S N +    P    +L+ +
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVL 552

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  122 bits (307), Expect = 4e-29
 Identities = 77/409 (18%), Positives = 150/409 (36%), Gaps = 47/409 (11%)

Query: 86  SLASLRDLYLASSTLLSINRPSLSSMNSS---TSLTLLDLSSCGLSNSAYHWL------- 135
              +L    LA+++L S          +      L +LD+S  G +              
Sbjct: 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231

Query: 136 ----FKISSNLLALDLNSNQLAGPIPDYAFSNM--TALQHLNLSLNQISAISKS-FGNMC 188
                 ++ +++      + +        F+ +  ++++HL+LS   + +++   F  + 
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIKD-PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK 290

Query: 189 GLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDIT--EFSSLQELH 246
            LK L+L  N +     E F  L      +L++L L  N L   L          +  + 
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLD-----NLQVLNLSYNLLG-ELYSSNFYGLPKVAYID 344

Query: 247 LFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEG 306
           L  N +     + F+    L  L+L  N L      +   P +  + +S ++L       
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNAL----TTIHFIPSIPDIFLSGNKLVTLPKIN 400

Query: 307 LGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA---LNFSFGWLPPFQLE 363
           L        + L  N LE +     +  +  L+ +  + N  +    + +    P   LE
Sbjct: 401 L----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP--SLE 454

Query: 364 SIGLLHCKLGPHFPKWLQSQ-----KNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSH 418
            + L    L   +   L         +   L ++   ++   P  F  L   L  L+L+ 
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL-TALRGLSLNS 513

Query: 419 NHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFS 467
           N L  TVL  +   A    +D+S N    P P V  +++ L++++NKF 
Sbjct: 514 NRL--TVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.4 bits (227), Expect = 3e-19
 Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 22/205 (10%)

Query: 78  NTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFK 137
           +  + TI  + S+ D++L+ + L+++ + +L+         L+ LS   L N    +   
Sbjct: 371 DNALTTIHFIPSIPDIFLSGNKLVTLPKINLT-------ANLIHLSENRLENLDILYFLL 423

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS------FGNMCGLK 191
              +L  L LN N+ +    D   S   +L+ L L  N +    ++      F  +  L+
Sbjct: 424 RVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483

Query: 192 TLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNK 251
            L+L  N L    P +F +L+     +L  L L  N+LT  L      ++L+ L +  N+
Sbjct: 484 VLYLNHNYLNSLPPGVFSHLT-----ALRGLSLNSNRLT-VLSHNDLPANLEILDISRNQ 537

Query: 252 LDGSFPEKFRKPSPLVILNLDGNQL 276
           L    P+ F     L +L++  N+ 
Sbjct: 538 LLAPNPDVF---VSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 86.8 bits (215), Expect = 7e-18
 Identities = 54/249 (21%), Positives = 94/249 (37%), Gaps = 27/249 (10%)

Query: 69  SQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCG-- 126
           S N +  ++++       L  +  + L  + +  I   +   +     L  LDL      
Sbjct: 322 SYNLLGELYSS---NFYGLPKVAYIDLQKNHIAIIQDQTFKFL---EKLQTLDLRDNALT 375

Query: 127 ------------LSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSL 174
                       LS +    L KI+     + L+ N+L      Y    +  LQ L L+ 
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435

Query: 175 NQISAISKS--FGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS 232
           N+ S+ S          L+ L L +N L                + L++L L  N L   
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 233 LPDI-TEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTR 291
            P + +  ++L+ L L  N+L          P+ L IL++  NQL    P+  VF  L+ 
Sbjct: 496 PPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQL--LAPNPDVFVSLSV 551

Query: 292 LDVSDSRLN 300
           LD++ ++  
Sbjct: 552 LDITHNKFI 560

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 85.6 bits (212), Expect = 2e-17
 Identities = 63/373 (16%), Positives = 125/373 (33%), Gaps = 29/373 (7%)

Query: 284 SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDF 343
            V     RL +S + +    +     L +L+ L+L        I +    NL  L+ +D 
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 344 SFNSLALNFSFGWL-PPFQLESIGLLHCKLGPHF--PKWLQSQKNYYFLDISDTEISDAV 400
             + +            F L  + L  C L        + ++ K    LD+S  +I    
Sbjct: 81  GSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 401 PSWFWDLSPNLYYLNLSHNHLEG-TVLDL-SLNYAGYPGIDLSSNDFEGPVPPVPGNV-- 456
               +    +L  ++ S N +      +L  L         L++N     V    G    
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 457 -------TSLNLSNNKFSGPISSLCS--ISGEYFSYLDVSDNLLSGELPDCLLRW----- 502
                    L++S N ++  I+   S  IS      L ++ +++        ++      
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 503 -QALAVLNLANNNFSGNFLTFFVGEIPPS-LKKCNELKIIDAGDNKFSGTIPAWIGDTLP 560
              LA  ++ + + S  F+      +     +   +LK+++   NK +  I       L 
Sbjct: 260 FAGLARSSVRHLDLSHGFVFS----LNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLD 314

Query: 561 KLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTI 620
            L +L+L  N        N   L K+  +D   N I+    +    L  +      ++ +
Sbjct: 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 621 THIYVYYRSATLD 633
           T I+       + 
Sbjct: 375 TTIHFIPSIPDIF 387

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (385), Expect = 2e-41
 Identities = 64/267 (23%), Positives = 113/267 (42%), Gaps = 11/267 (4%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSS-CGLSNSAYHWLFKISSN 141
           T T    + +L L S   L    P  SS+ +   L  L +     L       + K++  
Sbjct: 45  TDTQTYRVNNLDL-SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT-Q 102

Query: 142 LLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQIS-AISKSFGNMCGLKTLHLFDNNL 200
           L  L +    ++G IPD   S +  L  L+ S N +S  +  S  ++  L  +    N +
Sbjct: 103 LHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 201 TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKF 260
           +G +P+ + + S         + +  N+LTG +P      +L  + L  N L+G     F
Sbjct: 162 SGAIPDSYGSFS----KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLF 217

Query: 261 RKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFG 320
                   ++L  N L   L  + +   L  LD+ ++R+ GT+ +GL +L  L  L++  
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

Query: 321 NSLEGMITESHVSNLSKLKYMDFSFNS 347
           N+L G I +    NL +     ++ N 
Sbjct: 278 NNLCGEIPQG--GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  137 bits (348), Expect = 2e-36
 Identities = 64/318 (20%), Positives = 126/318 (39%), Gaps = 56/318 (17%)

Query: 290 TRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMIT-ESHVSNLSKLKYMDFS-FNS 347
              D  +    G + +   +  ++  LDL G +L       S ++NL  L ++     N+
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88

Query: 348 LALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDL 407
           L      G +PP    +I  L                  ++L I+ T +S A+P +   +
Sbjct: 89  L-----VGPIPP----AIAKL---------------TQLHYLYITHTNVSGAIPDFLSQI 124

Query: 408 SPNLYYLNLSHNHLEGTV-LDL----SLNYAGYPGIDLSSNDFEGPVPPVPGNVTS---- 458
              L  L+ S+N L GT+   +    +L       I    N   G +P   G+ +     
Sbjct: 125 K-TLVTLDFSYNALSGTLPPSISSLPNLVG-----ITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 459 LNLSNNKFSGPI-SSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSG 517
           + +S N+ +G I  +  +++    +++D+S N+L G+        +    ++LA N+ + 
Sbjct: 179 MTISRNRLTGKIPPTFANLN---LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 518 NFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIP 577
           +            +     L  +D  +N+  GT+P  +   L  L  L++  N   G IP
Sbjct: 236 DL---------GKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIP 285

Query: 578 RNLCRLSKIQLLDFSLNS 595
           +    L +  +  ++ N 
Sbjct: 286 QGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  126 bits (319), Expect = 2e-32
 Identities = 48/233 (20%), Positives = 86/233 (36%), Gaps = 32/233 (13%)

Query: 389 LDISDTEIS--DAVPSWFWDLSPNLYYLNLSH-NHLEGTVLD-----LSLNYAGYPGIDL 440
           LD+S   +     +PS   +L   L +L +   N+L G +         L+Y     + +
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHY-----LYI 108

Query: 441 SSNDFEGPVPPVPGNVTSL---NLSNNKFSGPI-SSLCSISGEYFSYLDVSDNLLSGELP 496
           +  +  G +P     + +L   + S N  SG +  S+ S+       +    N +SG +P
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP--NLVGITFDGNRISGAIP 166

Query: 497 DCLLRWQALA-VLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWI 555
           D    +  L   + ++ N  +G        +IPP+    N L  +D   N   G      
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTG--------KIPPTFANLN-LAFVDLSRNMLEGDASVLF 217

Query: 556 GDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLT 608
           G        + L  N     +   +     +  LD   N I G +P+ +  L 
Sbjct: 218 GS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  126 bits (318), Expect = 3e-32
 Identities = 77/376 (20%), Positives = 125/376 (33%), Gaps = 102/376 (27%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQIS---AISKSFGNMCGLKTLH 194
           +SS L   D  +    G + D   +    + +L+LS   +     I  S  N+  L  L+
Sbjct: 24  LSSWLPTTDCCNRTWLGVLCD-TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82

Query: 195 LFD-NNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKL 252
           +   NNL G +P     L+      L  L +    ++G++PD +++  +L  L    N L
Sbjct: 83  IGGINNLVGPIPPAIAKLT-----QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

Query: 253 DGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSK 312
            G+ P                                                 +  L  
Sbjct: 138 SGTLPP-----------------------------------------------SISSLPN 150

Query: 313 LEFLDLFGNSLEGMITESHVSNLSKL-KYMDFSFNSLALNFSFGWLPPFQLESIGLLHCK 371
           L  +   GN + G I +S   + SKL   M  S N L      G +PP    +   L   
Sbjct: 151 LVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT-----GKIPP----TFANL--- 197

Query: 372 LGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDL--- 428
                        N  F+D+S   +       F     N   ++L+ N L   +  +   
Sbjct: 198 -------------NLAFVDLSRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLGKVGLS 243

Query: 429 -SLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL---NLSNNKFSGPISSLCSISGEYFSYL 484
            +LN      +DL +N   G +P     +  L   N+S N   G I    ++    F   
Sbjct: 244 KNLNG-----LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ--RFDVS 296

Query: 485 DVSDN--LLSGELPDC 498
             ++N  L    LP C
Sbjct: 297 AYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  106 bits (268), Expect = 1e-25
 Identities = 37/180 (20%), Positives = 60/180 (33%), Gaps = 34/180 (18%)

Query: 436 PGIDLSSNDFEGPVPPVPGN---VTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLS 492
           P  D  +  + G +         V +L+LS                              
Sbjct: 29  PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK-----------------------P 65

Query: 493 GELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIP 552
             +P  L     L  L +   N         VG IPP++ K  +L  +       SG IP
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINN-------LVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118

Query: 553 AWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVE 612
            ++   +  L  L    N   G++P ++  L  +  + F  N ISGAIP    + + +  
Sbjct: 119 DFLS-QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  146 bits (370), Expect = 2e-37
 Identities = 93/517 (17%), Positives = 167/517 (32%), Gaps = 69/517 (13%)

Query: 114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLS 173
             S   LDLS   L +    + F     L  LDL+  ++   I D A+ +++ L  L L+
Sbjct: 27  PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILT 84

Query: 174 LNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS 232
            N I +++  +F  +  L+ L   + NL         +L      +L+ L +  N +  S
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-----TLKELNVAHNLIQ-S 138

Query: 233 LPDITEFS---SLQELHLFDNKLDGSFPEKFRK----PSPLVILNLDGNQLWGSLPDLSV 285
                 FS   +L+ L L  NK+   +    R     P   + L+L  N +    P    
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 286 FPFLTRLDVSDSRLNGTVSEG-LGRLSKLEFLDLFGNSLEGM--ITESHVSNLSKLKYMD 342
              L +L + ++  +  V +  +  L+ LE   L          + +   S L  L  + 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 343 FSFNSLALNFSFGWLPP------FQLESIGLLHCKLG--PHFPKWLQSQKNYYFLDISDT 394
                LA    +             + S  L+   +     F      Q     ++    
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL-VNCKFG 317

Query: 395 EISDAVPSWFWDLSPNLYYLNLSHNHLEG----------TVLDLSLNYAGYPGIDLSSND 444
           +              +L  L  + N                LDLS N   +      S  
Sbjct: 318 QFPTLKL-------KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF--KGCCSQS 368

Query: 445 FEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS--YLDVSDNLLSGELPDCLLR- 501
             G       ++  L+LS N     + ++ S         +LD   + L       +   
Sbjct: 369 DFGTT-----SLKYLDLSFNG----VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 502 WQALAVLNLANNNFSGNFLTFFVGEIPPS-LKKCNELKIIDAGDNKFSGTIPAWIGDTLP 560
            + L  L++++ +                     + L+++    N F       I   L 
Sbjct: 420 LRNLIYLDISHTHTR---------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 561 KLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
            L  L L   Q     P     LS +Q+L+ + N + 
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  146 bits (370), Expect = 2e-37
 Identities = 94/495 (18%), Positives = 165/495 (33%), Gaps = 50/495 (10%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF 196
           +  +   LDL+ N L   +  Y+F +   LQ L+LS  +I  I   ++ ++  L TL L 
Sbjct: 26  LPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKL-D 253
            N +       F  LS     SL+ L      L  SL +  I    +L+EL++  N +  
Sbjct: 85  GNPIQSLALGAFSGLS-----SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQS 138

Query: 254 GSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLN------GTVSEGL 307
              PE F   + L  L+L  N++  S+   +    L ++ + +  L+        +  G 
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQ-SIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 308 GRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGL 367
            +  +L  L L  N     + ++ +  L+ L+             +        LE +  
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 368 LHCK---------LGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSH 418
           L  +                      N     +    I       +     +L  +N   
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 419 NHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVP-GNVTSLNLSNNKFSGPISSLCSIS 477
                  L  SL       +  +SN        V   ++  L+LS N  S       S  
Sbjct: 317 GQFPTLKLK-SLKR-----LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 478 G-EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPS--LKKC 534
           G     YLD+S N +   +    L  + L  L+  ++N           ++         
Sbjct: 371 GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK---------QMSEFSVFLSL 420

Query: 535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRN-LCRLSKIQLLDFSL 593
             L  +D             I + L  L +L +  N F  +   +    L  +  LD S 
Sbjct: 421 RNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 594 NSISGAIPKCINNLT 608
             +    P   N+L+
Sbjct: 480 CQLEQLSPTAFNSLS 494

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  146 bits (369), Expect = 2e-37
 Identities = 101/528 (19%), Positives = 181/528 (34%), Gaps = 60/528 (11%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLA 144
            S   L+ L L+   + +I   +  S+   + L+ L L+   + + A    F   S+L  
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSL---SHLSTLILTGNPIQSLALGA-FSGLSSLQK 104

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS--KSFGNMCGLKTLHLFDNNLTG 202
           L      LA  + ++   ++  L+ LN++ N I +    + F N+  L+ L L  N +  
Sbjct: 105 LVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 203 QLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEK-FR 261
                   L          L L  N +    P   +   L +L L +N    +  +   +
Sbjct: 164 IYCTDLRVLHQ-MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 262 KPSPLVILNLDGNQLWG----SLPDLSVFPFLTRLDVSDSRLNG------TVSEGLGRLS 311
             + L +  L   +          D S    L  L + + RL         + +    L+
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 312 KLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCK 371
            +    L   ++E +   S+      L+ ++  F           L    L+ +     K
Sbjct: 283 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSNK 336

Query: 372 LGPHFPKWLQSQKNYYFLDISDTEISD-AVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSL 430
            G  F        +  FLD+S   +S     S     + +L YL+LS N +         
Sbjct: 337 GGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--------- 385

Query: 431 NYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNL 490
                  I +SSN            +  L+  ++           +S     YLD+S   
Sbjct: 386 -------ITMSSNFLGLE------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 491 LSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGT 550
                        +L VL +A N+F  NFL       P    +   L  +D    +    
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFL-------PDIFTELRNLTFLDLSQCQLE-Q 484

Query: 551 IPAWIGDTLPKLAILSLRSNQFHGSIPRN-LCRLSKIQLLDFSLNSIS 597
           +     ++L  L +L++ SNQ   S+P     RL+ +Q +    N   
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (269), Expect = 1e-24
 Identities = 70/353 (19%), Positives = 115/353 (32%), Gaps = 50/353 (14%)

Query: 83  TITSLASLRDLYLASSTLLSINR---PSLSSMNSSTSLTL--LDLSSCGLSNSAYHWLFK 137
            I  LA L    L      +         S++    +LT+    L+           LF 
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFD 197
             +N+ +  L S  +              L+ +N    Q   +      +  LK L    
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-----LKSLKRLTFTS 334

Query: 198 NNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEF---SSLQELHLFDNKLDG 254
           N       E+ L        SLE L L  N L+            +SL+ L L  N +  
Sbjct: 335 NKGGNAFSEVDL-------PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI- 386

Query: 255 SFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF---PFLTRLDVSDSRLNGTVSEGLGRLS 311
           +    F     L  L+   + L   + + SVF     L  LD+S +      +     LS
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 312 KLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCK 371
            LE L + GNS +        + L  L ++D S                QLE +      
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC--------------QLEQL------ 485

Query: 372 LGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGT 424
                P    S  +   L+++  ++  +VP   +D   +L  + L  N  + +
Sbjct: 486 ----SPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 533

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  100 bits (251), Expect = 2e-22
 Identities = 57/282 (20%), Positives = 104/282 (36%), Gaps = 33/282 (11%)

Query: 65  LSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSS 124
           + +     +    +  I     L ++    L S T+  +     S       L L++   
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKF 316

Query: 125 CGLSNSAYHWLFKIS---------------SNLLALDLNSNQLAG-PIPDYAFSNMTALQ 168
                     L +++                +L  LDL+ N L+       +    T+L+
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 169 HLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPE--LFLNLSGCSKNSLEILKLGG 226
           +L+LS N +  +S +F  +  L+ L    +NL  Q+ E  +FL+L      +L  L +  
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLR-----NLIYLDISH 430

Query: 227 NKLTGSLPDI-TEFSSLQELHLFDNKLDGSFPEK-FRKPSPLVILNLDGNQLWGSLPDLS 284
                +   I    SSL+ L +  N    +F    F +   L  L+L   QL   L   +
Sbjct: 431 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP-T 488

Query: 285 VF---PFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL 323
            F     L  L+++ ++L         RL+ L+ + L  N  
Sbjct: 489 AFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.9 bits (239), Expect = 5e-21
 Identities = 50/212 (23%), Positives = 76/212 (35%), Gaps = 13/212 (6%)

Query: 79  TCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI 138
               +   L SL  L L+ + L      S S   + TSL  LDLS  G+        F  
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVIT--MSSNFLG 394

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFD 197
              L  LD   + L        F ++  L +L++S           F  +  L+ L +  
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454

Query: 198 NNLTGQL-PELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDG 254
           N+      P++F  L      +L  L L   +L   L        SSLQ L++  N+L  
Sbjct: 455 NSFQENFLPDIFTELR-----NLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKS 508

Query: 255 SFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF 286
                F + + L  + L  N    S P +   
Sbjct: 509 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.5 bits (217), Expect = 3e-18
 Identities = 42/173 (24%), Positives = 69/173 (39%), Gaps = 13/173 (7%)

Query: 69  SQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLS 128
           S N +IT+ +        L  L  L    S L  +     S   S  +L  LD+S     
Sbjct: 381 SFNGVITMSSN----FLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTR 434

Query: 129 NSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS-FGNM 187
            + ++ +F   S+L  L +  N          F+ +  L  L+LS  Q+  +S + F ++
Sbjct: 435 VA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 188 CGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFS 240
             L+ L++  N L      +F  L+     SL+ + L  N    S P I   S
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLT-----SLQKIWLHTNPWDCSCPRIDYLS 541

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 58/332 (17%), Positives = 104/332 (31%), Gaps = 19/332 (5%)

Query: 279 SLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKL 338
            +PD ++      LD+S + L    S       +L+ LDL    ++  I +    +LS L
Sbjct: 21  KIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78

Query: 339 KYMDFSFNSLAL--NFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEI 396
             +  + N +      +F  L    L+ +  +   L       +   K    L+++   I
Sbjct: 79  STLILTGNPIQSLALGAFSGLS--SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 397 SDAVPSWFWDLSPNLYYLNLSHNHL----EGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV 452
                  ++    NL +L+LS N +       +  L         +DLS N      P  
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

Query: 453 --PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVL-N 509
                +  L L NN  S  +   C           +       E         AL  L N
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 510 LANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRS 569
           L    F   +L +++ +I         +                        L +++ + 
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKF 316

Query: 570 NQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP 601
            QF     ++L      + L F+ N    A  
Sbjct: 317 GQFPTLKLKSL------KRLTFTSNKGGNAFS 342

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  141 bits (358), Expect = 5e-36
 Identities = 104/534 (19%), Positives = 200/534 (37%), Gaps = 64/534 (11%)

Query: 97  SSTLLSINRPSLSSM--NSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAG 154
           +S +      S +S+    + ++  LDLS   ++    H   +  +NL  L L S+++  
Sbjct: 6   ASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINT 64

Query: 155 PIPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTG-QLPELFLNLS 212
            I   AF ++ +L+HL+LS N +S++S S FG +  LK L+L  N      +  LF NL+
Sbjct: 65  -IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 213 GCSKNSLEILKLGGNKLTGSLPDIT--EFSSLQELHLFDNKLDGSFPEKFRKPSPLVILN 270
                +L+ L++G  +    +  I     +SL EL +    L     +  +    +  L 
Sbjct: 124 -----NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178

Query: 271 LDGNQLWGSLPD--LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM-- 326
           L  ++    L +    +   +  L++ D+ L       L        +         +  
Sbjct: 179 LHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 327 ---------------ITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCK 371
                          ++E    + +     DF+ +   +    G +    +  + +    
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 372 LGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLN 431
           L           +    + + ++++   VP  F     +L +L+LS N +    L  S  
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 432 YAGYPG---IDLSSNDFEGPVPPVPG------NVTSLNLSNNKFSGPISSLCSISGEYFS 482
              +P    + LS N     +           N+TSL++S N F  P+   C    +   
Sbjct: 357 KGAWPSLQTLVLSQNHLRS-MQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-R 413

Query: 483 YLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDA 542
           +L++S   +   +  C+   Q L VL+++NNN                L +   L+ +  
Sbjct: 414 FLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD---------SFSLFLPR---LQELYI 458

Query: 543 GDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSI 596
             NK   T+P       P L ++ +  NQ          RL+ +Q +    N  
Sbjct: 459 SRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  123 bits (310), Expect = 7e-30
 Identities = 89/466 (19%), Positives = 158/466 (33%), Gaps = 64/466 (13%)

Query: 86  SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLAL 145
           SL SL  L L+ + L S++      +   +SL  L+L            LF   +NL  L
Sbjct: 72  SLGSLEHLDLSDNHLSSLSSSWFGPL---SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 146 DLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQL 204
            + + +    I    F+ +T+L  L +    +      S  ++  +  L L  +     L
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 205 PELFLNLSGCSKNSLEILKLGGNKLT----GSLPDITEFSSLQELHLFDNKL-DGSF--- 256
                 LS     S+  L+L    L       LP     S +++L    + L D SF   
Sbjct: 189 EIFADILS-----SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 257 ---PEKFRKPSPLVILNLDGNQLWGSLPDLSVFPF----------LTRLDVSDSRLNGTV 303
                   + S +   +   N L G                    + RL +    L   +
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGL-GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 304 SEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSL-----ALNFSFGWLP 358
           S     L K++ + +  + +  ++  S   +L  L+++D S N +       +   G  P
Sbjct: 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP 361

Query: 359 PFQLESIGLLHCKLG--PHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNL 416
              L+++ L    L       + L + KN   LDIS         S  W     + +LNL
Sbjct: 362 --SLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW--PEKMRFLNL 417

Query: 417 SHNHLEGTVLDLSLNYAGYPGI---DLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSL 473
           S   +        +       +   D+S+N+ +         +  L +S NK       L
Sbjct: 418 SSTGIR------VVKTCIPQTLEVLDVSNNNLDS-FSLFLPRLQELYISRNK-------L 463

Query: 474 CSISGEYFS----YLDVSDNLLSGELPDCLLRWQALAVLNLANNNF 515
            ++           + +S N L         R  +L  + L  N +
Sbjct: 464 KTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  108 bits (272), Expect = 4e-25
 Identities = 81/508 (15%), Positives = 148/508 (29%), Gaps = 110/508 (21%)

Query: 116 SLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLN 175
           +  + D  S   +         +++ + +LDL+ N++   I          LQ L L  +
Sbjct: 6   ASGVCDGRSRSFT----SIPSGLTAAMKSLDLSFNKITY-IGHGDLRACANLQVLILKSS 60

Query: 176 QISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP 234
           +I+ I   +F ++  L+ L L DN+L+      F  LS     SL+ L L GN    +L 
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS-----SLKYLNLMGNPYQ-TLG 114

Query: 235 DITEFS---SLQELHLFDNKLDGSFPEK-FRKPSPLVILNLDGNQLWGSLPD--LSVFPF 288
             + F    +LQ L + + +         F   + L  L +    L  +     L     
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL-RNYQSQSLKSIRD 173

Query: 289 LTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSL 348
           +  L +  S     +      LS + +L+L   +               L    FS   +
Sbjct: 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTN---------------LARFQFSPLPV 218

Query: 349 ALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLS 408
               S      F+   +            +++       F D +   + D  PS    +S
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 409 --PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKF 466
               +  + +   H+    L   L+             +          V  + + N+K 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTV-----------YSLL-----EKVKRITVENSKV 322

Query: 467 SGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGE 526
                    +   +  +L                  ++L  L+L+ N     +L     +
Sbjct: 323 F-------LVPCSFSQHL------------------KSLEFLDLSENLMVEEYLKNSACK 357

Query: 527 IPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFH--GSIPRNLCRLS 584
                                            P L  L L  N           L  L 
Sbjct: 358 ------------------------------GAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

Query: 585 KIQLLDFSLNSISGAIPKCINNLTAMVE 612
            +  LD S N+    +P        M  
Sbjct: 388 NLTSLDISRNTFH-PMPDSCQWPEKMRF 414

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 53/307 (17%), Positives = 103/307 (33%), Gaps = 57/307 (18%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI------ 138
             L+S+R L L  + L       L     S+ +  L      L++ +++ L K+      
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 139 --------------------------------SSNLLALDLNSNQLAGPIPDYAFSNMTA 166
                                           +  +  L +    L        +S +  
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEK 311

Query: 167 LQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLG 225
           ++ + +  +++  +  S   ++  L+ L L +N +  +  +           SL+ L L 
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP--SLQTLVLS 369

Query: 226 GNKLTGSLPDI----TEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP 281
            N L  S+           +L  L +  N      P+  + P  +  LNL    +   + 
Sbjct: 370 QNHLR-SMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGI-RVVK 426

Query: 282 DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYM 341
              +   L  LDVS++ L+ + S     L +L+ L +  N L+ +      S    L  M
Sbjct: 427 T-CIPQTLEVLDVSNNNLD-SFSLF---LPRLQELYISRNKLKTL---PDASLFPVLLVM 478

Query: 342 DFSFNSL 348
             S N L
Sbjct: 479 KISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 95.2 bits (237), Expect = 1e-20
 Identities = 54/349 (15%), Positives = 113/349 (32%), Gaps = 38/349 (10%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
           ++ S+  +  L L  S    +       ++S   L L D +      S       +    
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSP----LPVDEVS 222

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTG 202
             +   + + +  + D +F+ +  L    L L+++     +   +           +   
Sbjct: 223 SPMKKLAFRGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGL----------GDFNP 271

Query: 203 QLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDI-TEFSSLQELHLFDNKLDGSFPEKFR 261
              ++   L      ++  L +    L   L  + +    ++ + + ++K+        +
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331

Query: 262 KPSPLVILNLDGNQLWGSLPDLSVF----PFLTRLDVSDSRLN--GTVSEGLGRLSKLEF 315
               L  L+L  N +       S      P L  L +S + L       E L  L  L  
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 316 LDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLG-- 373
           LD+  N+   M          K+++++ S   +          P  LE + + +  L   
Sbjct: 392 LDISRNTFHPM--PDSCQWPEKMRFLNLSSTGIR---VVKTCIPQTLEVLDVSNNNLDSF 446

Query: 374 PHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLE 422
             F   LQ       L IS  ++     +      P L  + +S N L+
Sbjct: 447 SLFLPRLQE------LYISRNKLKTLPDASL---FPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 44/231 (19%)

Query: 399 AVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTS 458
           ++PS    L+  +  L+LS N +                  +   D          N+  
Sbjct: 19  SIPS---GLTAAMKSLDLSFNKIT----------------YIGHGDLRACA-----NLQV 54

Query: 459 LNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLSGELPDCLLRWQALAVLNLAN 512
           L L +++ +       +I G+ F       +LD+SDN LS           +L  LNL  
Sbjct: 55  LILKSSRIN-------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107

Query: 513 NNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQF 572
           N +           +         L+ +  G+ +    I       L  L  L +++   
Sbjct: 108 NPYQ-------TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 573 HGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHI 623
                ++L  +  I  L   L+  +  +    + L+++      ++ +   
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (341), Expect = 3e-34
 Identities = 98/454 (21%), Positives = 184/454 (40%), Gaps = 47/454 (10%)

Query: 79  TCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI 138
           T  V+ T L  +  L      + SI    +  +    +LT ++ S+  L++       K 
Sbjct: 37  TDTVSQTDLDQVTTLQADRLGIKSI--DGVEYL---NNLTQINFSNNQLTDITP---LKN 88

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDN 198
            + L+ + +N+NQ+A   P    +N+T L  L L  NQI+ I     N+  L  L L  N
Sbjct: 89  LTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSN 144

Query: 199 NLT-----GQLPEL-FLNLSGCSKN--------SLEILKLGGNKLTGSLPDITEFSSLQE 244
            ++       L  L  L+      +        +LE L +  NK++  +  + + ++L+ 
Sbjct: 145 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLES 203

Query: 245 LHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVS 304
           L   +N++    P      + L  L+L+GNQL   +  L+    LT LD++++++  +  
Sbjct: 204 LIATNNQISDITP--LGILTNLDELSLNGNQL-KDIGTLASLTNLTDLDLANNQI--SNL 258

Query: 305 EGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLES 364
             L  L+KL  L L  N +  +   S ++ L+ L  ++ + N L        L    L  
Sbjct: 259 APLSGLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQLEDISPISNLK--NLTY 313

Query: 365 IGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGT 424
           + L    +       + S      L   + ++SD   S   +L  N+ +L+  HN +   
Sbjct: 314 LTLYFNNI--SDISPVSSLTKLQRLFFYNNKVSD--VSSLANL-TNINWLSAGHNQISDL 368

Query: 425 VLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSIS-GEYFSY 483
               +L       + L+   +         NV+  N   N  +G + +  +IS G  ++ 
Sbjct: 369 TPLANLTRITQ--LGLNDQAWTNAPVNYKANVSIPNTVKN-VTGALIAPATISDGGSYTE 425

Query: 484 LDVSDNLLSGELPDCLLRWQALAVLNLANNNFSG 517
            D++ NL S    +    +     +      FSG
Sbjct: 426 PDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSG 458

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  129 bits (327), Expect = 2e-32
 Identities = 84/462 (18%), Positives = 161/462 (34%), Gaps = 55/462 (11%)

Query: 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNN 199
           +  +   L    +   +     +++  +  L      I +I      +  L  ++  +N 
Sbjct: 24  AEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ 79

Query: 200 LTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEK 259
           LT         L   +K  L  + +  N++   +  +   ++L  L LF+N++  +  + 
Sbjct: 80  LTD-----ITPLKNLTK--LVDILMNNNQIA-DITPLANLTNLTGLTLFNNQI--TDIDP 129

Query: 260 FRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLF 319
            +  + L  L L  N +   +  LS    L +L   +     T  + L  L+ LE LD+ 
Sbjct: 130 LKNLTNLNRLELSSNTI-SDISALSGLTSLQQLSFGN---QVTDLKPLANLTTLERLDIS 185

Query: 320 GNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKW 379
            N +  +   S ++ L+ L+ +  + N ++     G L    L+ + L   +L       
Sbjct: 186 SNKVSDI---SVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQL--KDIGT 238

Query: 380 LQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGID 439
           L S  N   LD+++ +IS+  P     L   L  L L  N +        L       ++
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGL-TKLTELKLGANQISNISPLAGLTALTN--LE 293

Query: 440 LSSNDFEGPVPPVPG--NVTSLNLSNNKFSG--PISSLCSISGEYFSYLDVSDNLLSGEL 495
           L+ N  E  + P+    N+T L L  N  S   P+SSL  +       L   +N +S   
Sbjct: 294 LNENQLED-ISPISNLKNLTYLTLYFNNISDISPVSSLTKL-----QRLFFYNNKVSD-- 345

Query: 496 PDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWI 555
              L     +  L+  +N  S              L     +  +   D  ++   P   
Sbjct: 346 VSSLANLTNINWLSAGHNQISD----------LTPLANLTRITQLGLNDQAWT-NAPVNY 394

Query: 556 GDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
              +     +   +       P  +         D + N  S
Sbjct: 395 KANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 90.4 bits (225), Expect = 2e-19
 Identities = 74/398 (18%), Positives = 143/398 (35%), Gaps = 53/398 (13%)

Query: 218 SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLW 277
            L    +  +     +   T  +   +  L    +  +          +  L  D   + 
Sbjct: 2   PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI- 58

Query: 278 GSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSK 337
            S+  +     LT+++ S+++L  T    L  L+KL  + +  N +  +   + ++NL+ 
Sbjct: 59  KSIDGVEYLNNLTQINFSNNQL--TDITPLKNLTKLVDILMNNNQIADI---TPLANLTN 113

Query: 338 LKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEIS 397
           L  +    N +        L    L  + L    +       L    +   L   + +++
Sbjct: 114 LTGLTLFNNQITDIDPLKNLT--NLNRLELSSNTI--SDISALSGLTSLQQLSFGN-QVT 168

Query: 398 DAVPSWFWDLSPNLYYLNLSHNHLEG-TVLD--LSLNYAGYPGIDLSSNDFEGPVPPVPG 454
           D  P    +L   L  L++S N +   +VL    +L       +  ++N     + P+  
Sbjct: 169 DLKP--LANL-TTLERLDISSNKVSDISVLAKLTNLES-----LIATNNQISD-ITPLGI 219

Query: 455 --NVTSLNLSNNKFSG--PISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNL 510
             N+  L+L+ N+      ++SL ++     + LD+++N +S   P  L     L  L L
Sbjct: 220 LTNLDELSLNGNQLKDIGTLASLTNL-----TDLDLANNQISNLAP--LSGLTKLTELKL 272

Query: 511 ANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSN 570
             N  S              L     L  ++  +N+     P      L  L  L+L  N
Sbjct: 273 GANQISN----------ISPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFN 319

Query: 571 QFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLT 608
                 P  +  L+K+Q L F  N +S      + NLT
Sbjct: 320 NISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLT 353

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 29/194 (14%)

Query: 79  TCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI 138
           + I  +  L +L +L L  + L  I    +S++    +LT L L    +S+ +       
Sbjct: 278 SNISPLAGLTALTNLELNENQLEDI--SPISNL---KNLTYLTLYFNNISDISP---VSS 329

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDN 198
            + L  L   +N+++        +N+T +  L+   NQIS ++    N+  +  L L D 
Sbjct: 330 LTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQISDLT-PLANLTRITQLGLNDQ 385

Query: 199 NLTGQLPELFLNLSG-----------------CSKNSLEILKLGGNKLTGSLPDITEFSS 241
             T        N+S                      S     +  N  + +      FS 
Sbjct: 386 AWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 445

Query: 242 LQELHLFDNKLDGS 255
              +        G+
Sbjct: 446 PVTIGKGTTTFSGT 459

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  129 bits (326), Expect = 2e-32
 Identities = 104/517 (20%), Positives = 172/517 (33%), Gaps = 96/517 (18%)

Query: 84  ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLL 143
             ++ S  + Y A S       P          + +  L  C            +     
Sbjct: 30  AENVKSKTEYYNAWSEWERNAPPGNGEQ---REMAVSRLRDC------------LDRQAH 74

Query: 144 ALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQ 203
            L+LN+  L   +P+        L+ L  S N ++ + +   +   LK+L + +NNL   
Sbjct: 75  ELELNNLGL-SSLPE----LPPHLESLVASCNSLTELPELPQS---LKSLLVDNNNLK-A 125

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKP 263
           L +L           LE L +  N+L   LP++   S L+ + + +N L    P+     
Sbjct: 126 LSDLP--------PLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLK-KLPDLPPS- 174

Query: 264 SPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL 323
             L  +    NQL   LP+L   PFLT +   ++ L             LE +    N L
Sbjct: 175 --LEFIAAGNNQL-EELPELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNIL 227

Query: 324 EGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPF--QLESIGLLHCKLGPHFPKWLQ 381
           E       + NL  L  +    N L        LP     LE++ +    L    P+  Q
Sbjct: 228 E---ELPELQNLPFLTTIYADNNLLK------TLPDLPPSLEALNVRDNYLT-DLPELPQ 277

Query: 382 SQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDL-SLNYAGYPGIDL 440
           S       +   + +S        +L PNLYYLN S N +        SL       +++
Sbjct: 278 SLTFLDVSENIFSGLS--------ELPPNLYYLNASSNEIRSLCDLPPSLEE-----LNV 324

Query: 441 SSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLL 500
           S+N     +P +P  +  L  S N  +       ++       L V  N L  E PD   
Sbjct: 325 SNNKLIE-LPALPPRLERLIASFNHLAEVPELPQNL-----KQLHVEYNPLR-EFPDIPE 377

Query: 501 RWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLP 560
             + L + +                E+P   +    LK +    N      P        
Sbjct: 378 SVEDLRMNSHLA-------------EVPELPQN---LKQLHVETNPLR-EFPDIPE---- 416

Query: 561 KLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
            +  L + S +             K++   F  +   
Sbjct: 417 SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  125 bits (315), Expect = 6e-31
 Identities = 88/454 (19%), Positives = 157/454 (34%), Gaps = 71/454 (15%)

Query: 163 NMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLN--------LSGC 214
           + T LQ      + ++ +     N+      +   +      P             L  C
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68

Query: 215 SKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGN 274
                  L+L    L+ SLP+      L+ L    N L    PE  +    L++ N +  
Sbjct: 69  LDRQAHELELNNLGLS-SLPE--LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124

Query: 275 QLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSN 334
            L        + P L  L VS+++L   + E L   S L+ +D+  NSL+ +        
Sbjct: 125 ALS------DLPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLP-----DL 171

Query: 335 LSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDT 394
              L+++    N L        LP   L +I   +  L    P    S ++   +   + 
Sbjct: 172 PPSLEFIAAGNNQLEELPELQNLP--FLTAIYADNNSL-KKLPDLPLSLES---IVAGNN 225

Query: 395 EISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPG 454
            + +       +L P L  +   +N L    L           +++  N     +P +P 
Sbjct: 226 ILEE--LPELQNL-PFLTTIYADNNLL--KTLPDLPPSLEA--LNVRDNYLTD-LPELPQ 277

Query: 455 NVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNN 514
           ++T L++S N FSG      ++      YL+ S N +   L D      +L  LN++NN 
Sbjct: 278 SLTFLDVSENIFSGLSELPPNL-----YYLNASSNEIR-SLCD---LPPSLEELNVSNNK 328

Query: 515 FSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHG 574
                      E+P    +   L+ + A  N  +  +P         L  L +  N    
Sbjct: 329 LI---------ELPALPPR---LERLIASFNHLA-EVPELPQ----NLKQLHVEYNPLR- 370

Query: 575 SIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLT 608
             P     +  ++     +NS    +P+   NL 
Sbjct: 371 EFPDIPESVEDLR-----MNSHLAEVPELPQNLK 399

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.8 bits (231), Expect = 4e-20
 Identities = 75/434 (17%), Positives = 141/434 (32%), Gaps = 86/434 (19%)

Query: 207 LFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSP 265
           +F+N    S   L+      + LT  +P       S  E +   ++ + + P    +   
Sbjct: 1   MFINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQRE 59

Query: 266 LVI-------------LNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSK 312
           + +             L L+   L  SLP+L   P L  L  S + L   + E    L  
Sbjct: 60  MAVSRLRDCLDRQAHELELNNLGL-SSLPEL--PPHLESLVASCNSLT-ELPELPQSLKS 115

Query: 313 LEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKL 372
           L   +    +L              L+Y+  S N L             L+ I + +  L
Sbjct: 116 LLVDNNNLKALS--------DLPPLLEYLGVSNNQLEKLPELQNSS--FLKIIDVDNNSL 165

Query: 373 GPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG--------T 424
               P    S +    +   + ++ + +P    +L P L  +   +N L+          
Sbjct: 166 -KKLPDLPPSLEF---IAAGNNQLEE-LPE-LQNL-PFLTAIYADNNSLKKLPDLPLSLE 218

Query: 425 VLDLSLNYAGYP----------GIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLC 474
            +    N                I   +N  +  +P +P ++ +LN+ +N  +       
Sbjct: 219 SIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQ 277

Query: 475 SISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKC 534
           S+     ++LDVS+N+ S  L +       L  LN ++N             +       
Sbjct: 278 SL-----TFLDVSENIFS-GLSELP---PNLYYLNASSNEIR---------SLCDLPPS- 318

Query: 535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLN 594
             L+ ++  +NK    +PA       +L  L    N     +P     L +   L    N
Sbjct: 319 --LEELNVSNNKLI-ELPALPP----RLERLIASFNHLA-EVPELPQNLKQ---LHVEYN 367

Query: 595 SISGAIPKCINNLT 608
            +    P    ++ 
Sbjct: 368 PLR-EFPDIPESVE 380

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (321), Expect = 2e-32
 Identities = 71/358 (19%), Positives = 145/358 (40%), Gaps = 42/358 (11%)

Query: 81  IVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISS 140
           I     LA      L  +++  +   +   +    S+T L ++   +++       +  +
Sbjct: 15  IFPDADLAEGIRAVLQKASVTDV--VTQEEL---ESITKLVVAGEKVASIQG---IEYLT 66

Query: 141 NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNL 200
           NL  L+LN NQ+    P    SN+  L +L +  N+I+ IS +  N+  L+ L+L ++N+
Sbjct: 67  NLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNI 122

Query: 201 T-----GQLPEL-FLNLSGCSK----------NSLEILKLGGNKLTGSLPDITEFSSLQE 244
           +       L ++  LNL                 L  L +  +K+   +  I   + L  
Sbjct: 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTPIANLTDLYS 181

Query: 245 LHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVS 304
           L L  N++           + L       NQ+   +  ++    L  L + ++++     
Sbjct: 182 LSLNYNQI--EDISPLASLTSLHYFTAYVNQI-TDITPVANMTRLNSLKIGNNKITD--L 236

Query: 305 EGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLES 364
             L  LS+L +L++  N +  +   + V +L+KLK ++   N ++       L   QL S
Sbjct: 237 SPLANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDISVLNNLS--QLNS 291

Query: 365 IGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLE 422
           + L + +LG    + +    N   L +S   I+D  P     L   +   + ++  ++
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASL-SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (313), Expect = 2e-31
 Identities = 73/436 (16%), Positives = 153/436 (35%), Gaps = 95/436 (21%)

Query: 117 LTLLDLSSCGLSNSAYHWLFKIS--SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSL 174
              L      ++      +F  +  +  +   L    +   +       + ++  L ++ 
Sbjct: 2   AATLATLPAPINQ-----IFPDADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAG 53

Query: 175 NQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP 234
            ++++I      +  L+ L+L  N +T   P    NL       L  L +G NK+T  + 
Sbjct: 54  EKVASIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLV-----KLTNLYIGTNKIT-DIS 104

Query: 235 DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDV 294
            +   ++L+EL+L ++ +  S        + +  LNL  N     L  LS    L  L V
Sbjct: 105 ALQNLTNLRELYLNEDNI--SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162

Query: 295 SDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSF 354
           ++S++       +  L+ L  L L  N +E +   S +++L+ L Y     N +      
Sbjct: 163 TESKV--KDVTPIANLTDLYSLSLNYNQIEDI---SPLASLTSLHYFTAYVNQITDITPV 217

Query: 355 GWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYL 414
             +   +L S                        L I + +I+D  P    +L   L +L
Sbjct: 218 ANMT--RLNS------------------------LKIGNNKITDLSP--LANL-SQLTWL 248

Query: 415 NLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSG--PISS 472
            +  N +     D++          +               +  LN+ +N+ S    +++
Sbjct: 249 EIGTNQIS----DIN---------AVKDL----------TKLKMLNVGSNQISDISVLNN 285

Query: 473 LCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLK 532
           L  +     + L +++N L  E  + +     L  L L+ N+ +              L 
Sbjct: 286 LSQL-----NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD----------IRPLA 330

Query: 533 KCNELKIIDAGDNKFS 548
             +++   D  +    
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  112 bits (283), Expect = 3e-27
 Identities = 80/435 (18%), Positives = 148/435 (34%), Gaps = 94/435 (21%)

Query: 167 LQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGG 226
              L      I+ I     ++       L   ++T  + +  L        S+  L + G
Sbjct: 2   AATLATLPAPINQIF-PDADLAEGIRAVLQKASVTDVVTQEELE-------SITKLVVAG 53

Query: 227 NKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF 286
            K+  S+  I   ++L+ L+L  N++    P        L  L +  N++   +  L   
Sbjct: 54  EKVA-SIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI-TDISALQNL 109

Query: 287 PFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFN 346
             L  L +++  +  +    L  L+K+  L+L  N     +  S +SN++ L Y+  + +
Sbjct: 110 TNLRELYLNEDNI--SDISPLANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTES 165

Query: 347 SLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWD 406
            +        L    L S                        L ++  +I D  P     
Sbjct: 166 KVKDVTPIANLT--DLYS------------------------LSLNYNQIEDISP--LAS 197

Query: 407 LSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPG--NVTSLNLSNN 464
           L  +L+Y     N +                           + PV     + SL + NN
Sbjct: 198 L-TSLHYFTAYVNQITD-------------------------ITPVANMTRLNSLKIGNN 231

Query: 465 KFSG--PISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTF 522
           K +   P+++L  ++     +L++  N +S    + +     L +LN+ +N  S      
Sbjct: 232 KITDLSPLANLSQLT-----WLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD----- 279

Query: 523 FVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCR 582
                   L   ++L  +   +N+        IG  L  L  L L  N      P  L  
Sbjct: 280 -----ISVLNNLSQLNSLFLNNNQLGNEDMEVIGG-LTNLTTLFLSQNHITDIRP--LAS 331

Query: 583 LSKIQLLDFSLNSIS 597
           LSK+   DF+   I 
Sbjct: 332 LSKMDSADFANQVIK 346

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  124 bits (314), Expect = 1e-30
 Identities = 81/374 (21%), Positives = 130/374 (34%), Gaps = 72/374 (19%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF 196
           I +    LDL  N++   +    F++   L+ L L+ N +SA+   +F N+  L+TL L 
Sbjct: 30  IPTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDIT--EFSSLQELHLFDNKLDG 254
            N L      +F  LS     +L  L +  NK+   L D    +  +L+ L + DN L  
Sbjct: 89  SNRLKLIPLGVFTGLS-----NLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVY 142

Query: 255 SFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLE 314
                F   + L  L L+   L  S+P  +                      L  L  L 
Sbjct: 143 ISHRAFSGLNSLEQLTLEKCNLT-SIPTEA----------------------LSHLHGLI 179

Query: 315 FLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGP 374
            L L   ++   I +     L +LK ++ S        +   L    L S+ + HC L  
Sbjct: 180 VLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238

Query: 375 HFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAG 434
                ++      FL++S   IS    S   +L   L  + L    L             
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL-LRLQEIQLVGGQLA------------ 285

Query: 435 YPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVSD 488
                +    F G        +  LN+S N+ +       ++    F        L +  
Sbjct: 286 ----VVEPYAFRG-----LNYLRVLNVSGNQLT-------TLEESVFHSVGNLETLILDS 329

Query: 489 NLLSGELPDCLLRW 502
           N L+    DC L W
Sbjct: 330 NPLAC---DCRLLW 340

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (311), Expect = 3e-30
 Identities = 57/269 (21%), Positives = 112/269 (41%), Gaps = 18/269 (6%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLA 144
            S   L +L L  + + ++   + +++    +L  L L S  L       +F   SNL  
Sbjct: 53  ASFPHLEELELNENIVSAVEPGAFNNL---FNLRTLGLRSNRLKLIPLG-VFTGLSNLTK 108

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQ 203
           LD++ N++   + DY F ++  L+ L +  N +  IS ++F  +  L+ L L   NLT  
Sbjct: 109 LDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLTGSLPDIT--EFSSLQELHLFDNKLDGSFPEKFR 261
             E   +L       L +L+L    +  ++ D +      L+ L +       +      
Sbjct: 168 PTEALSHLH-----GLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 262 KPSPLVILNLDGNQLWGSLPD--LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLF 319
               L  L++    L  ++P   +    +L  L++S + ++      L  L +L+ + L 
Sbjct: 222 YGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280

Query: 320 GNSLEGMITESHVSNLSKLKYMDFSFNSL 348
           G  L  ++       L+ L+ ++ S N L
Sbjct: 281 GGQLA-VVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  123 bits (310), Expect = 3e-30
 Identities = 76/338 (22%), Positives = 129/338 (38%), Gaps = 41/338 (12%)

Query: 88  ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDL 147
              R L L  + + ++N+   +S      L  L+L+   +S       F    NL  L L
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASF---PHLEELELNENIVSAVEPG-AFNNLFNLRTLGL 87

Query: 148 NSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPE 206
            SN+L   IP   F+ ++ L  L++S N+I  +    F ++  LK+L + DN+L      
Sbjct: 88  RSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 207 LFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFRKPS 264
            F  L+     SLE L L    LT S+P   ++    L  L L    ++      F++  
Sbjct: 147 AFSGLN-----SLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 265 PLVILNLDGNQLWGSLPDLSVFPF-LTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL 323
            L +L +       ++    ++   LT L ++   L       +  L  L FL+L  N +
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI 260

Query: 324 EGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQ 383
              I  S +  L +L+ +                   QL  +           P   +  
Sbjct: 261 S-TIEGSMLHELLRLQEIQLVGG--------------QLAVVE----------PYAFRGL 295

Query: 384 KNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHL 421
                L++S  +++    S F  +  NL  L L  N L
Sbjct: 296 NYLRVLNVSGNQLTTLEESVFHSV-GNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.9 bits (239), Expect = 4e-21
 Identities = 53/245 (21%), Positives = 87/245 (35%), Gaps = 43/245 (17%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLA 144
             L +L+ L +  + L+ I+  + S +                            ++L  
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAFSGL----------------------------NSLEQ 156

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQ 203
           L L    L   IP  A S++  L  L L    I+AI   SF  +  LK L +        
Sbjct: 157 LTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDT 215

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFR 261
           +    L        +L  L +    LT ++P   +     L+ L+L  N +         
Sbjct: 216 MTPNCLYGL-----NLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269

Query: 262 KPSPLVILNLDGNQLWGSLPD--LSVFPFLTRLDVSDSRLNGTVSEGL-GRLSKLEFLDL 318
           +   L  + L G QL   +         +L  L+VS ++L  T+ E +   +  LE L L
Sbjct: 270 ELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLIL 327

Query: 319 FGNSL 323
             N L
Sbjct: 328 DSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.7 bits (228), Expect = 9e-20
 Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 14/197 (7%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
             + L SL  L L    L SI   +LS +     L +L L    ++     + FK    L
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHL---HGLIVLRLRHLNINAIR-DYSFKRLYRL 202

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLT 201
             L+++       +       +  L  L+++   ++A+   +  ++  L+ L+L  N ++
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 202 GQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDIT--EFSSLQELHLFDNKLDGSFPEK 259
                +   L       L+ ++L G +L   +        + L+ L++  N+L       
Sbjct: 262 TIEGSMLHELL-----RLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315

Query: 260 FRKPSPLVILNLDGNQL 276
           F     L  L LD N L
Sbjct: 316 FHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 43/242 (17%), Positives = 80/242 (33%), Gaps = 46/242 (19%)

Query: 389 LDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGP 448
           L++++  +S   P  F +L  NL  L L  N L+                 +    F G 
Sbjct: 61  LELNENIVSAVEPGAFNNL-FNLRTLGLRSNRLK----------------LIPLGVFTGL 103

Query: 449 VPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLSGELPDCLLRW 502
                 N+T L++S NK          +    F        L+V DN L           
Sbjct: 104 S-----NLTKLDISENKIV-------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151

Query: 503 QALAVLNLANNNFSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPK 561
            +L  L L   N +          IP  +L   + L ++       +  I  +    L +
Sbjct: 152 NSLEQLTLEKCNLT---------SIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYR 201

Query: 562 LAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTIT 621
           L +L +    +  ++  N      +  L  +  +++      + +L  +     S + I+
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 622 HI 623
            I
Sbjct: 262 TI 263

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 11/142 (7%)

Query: 483 YLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKKCNELKIID 541
            LD+  N +     D    +  L  L L  N  S          + P +      L+ + 
Sbjct: 36  LLDLGKNRIKTLNQDEFASFPHLEELELNENIVS---------AVEPGAFNNLFNLRTLG 86

Query: 542 AGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP 601
              N+    IP  +   L  L  L +  N+    +      L  ++ L+   N +     
Sbjct: 87  LRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145

Query: 602 KCINNLTAMVEKASSNSTITHI 623
           +  + L ++ +       +T I
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSI 167

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (304), Expect = 3e-29
 Identities = 54/439 (12%), Positives = 135/439 (30%), Gaps = 53/439 (12%)

Query: 161 FSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSL 219
             N    +   ++ + +     S   +   +K L L  N L+          +      L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-----KL 60

Query: 220 EILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGS 279
           E+L L  N L     D+   S+L+ L L +N +     ++      +  L+   N +   
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SR 113

Query: 280 LPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLK 339
           +   S       + ++++++        G  S++++LDL  N ++ +      ++   L+
Sbjct: 114 VS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 340 YMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDA 399
           +++  +N +        +                      L++      LD+S  +++  
Sbjct: 173 HLNLQYNFIYD------VKGQV--------------VFAKLKT------LDLSSNKLAF- 205

Query: 400 VPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGY-PGIDLSSNDFEGPVPP--VPGNV 456
           +   F      + +++L +N L   +++ +L ++      DL  N F           N 
Sbjct: 206 MGPEFQSA-AGVTWISLRNNKL--VLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFS 516
               ++       ++          +                  R  AL     A  +  
Sbjct: 263 RVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 517 GNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSI 576
           G+        +    +     + IDA   ++  T+   +         L  +       +
Sbjct: 322 GSETE----RLECERENQARQREIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQV 376

Query: 577 PRNLCRLSKIQLLDFSLNS 595
                  +++         
Sbjct: 377 SNGRRAHAELDGTLQQAVG 395

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (285), Expect = 6e-27
 Identities = 73/475 (15%), Positives = 146/475 (30%), Gaps = 46/475 (9%)

Query: 135 LFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTL 193
           + +  +      +  + L          +   ++ L+LS N +S IS         L+ L
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 194 HLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLD 253
           +L  N L  +  +   +LS     +L  L L  N +     ++    S++ LH  +N + 
Sbjct: 64  NLSSNVLY-ETLD-LESLS-----TLRTLDLNNNYVQ----ELLVGPSIETLHAANNNIS 112

Query: 254 GSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPF--LTRLDVSDSRLNG-TVSEGLGRL 310
                + +       + L  N++   L DL       +  LD+  + ++    +E     
Sbjct: 113 RVSCSRGQG---KKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 311 SKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSL-ALNFSFGWLPPFQLESIGLLH 369
             LE L+L  N +  +         +KLK +D S N L  +   F       +  I L +
Sbjct: 169 DTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQSAA--GVTWISLRN 223

Query: 370 CKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLS 429
            KL     K L+  +N    D+            F+  +  +  +            +  
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 430 LNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKF-SGPISSLCSISGEYFS-----Y 483
                       +   E    P    + +L    +   SG  S    +  E  +      
Sbjct: 283 CTVPTL--GHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340

Query: 484 LDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAG 543
           +D         +    LR QA   L           L   V     +  + +       G
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKA-----LDEQVSNGRRAHAELDGTLQQAVG 395

Query: 544 DNKFSGTIPAWIGDTLPKLAILSLRSNQF-HGSIPRNLCRLSKIQLLDFSLNSIS 597
             +          +    L +L     ++    + +   + + I+  D   +  +
Sbjct: 396 QIELQHAT-----EEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  110 bits (277), Expect = 7e-26
 Identities = 68/386 (17%), Positives = 133/386 (34%), Gaps = 31/386 (8%)

Query: 86  SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLAL 145
           S  ++++L L+ + L  I+   L+     T L LL+LSS  L  +      +  S L  L
Sbjct: 32  SAWNVKELDLSGNPLSQISAADLAPF---TKLELLNLSSNVLYETLD---LESLSTLRTL 85

Query: 146 DLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLP 205
           DLN+N +             +++ L+ + N IS +S S G   G K ++L +N +T    
Sbjct: 86  DLNNNYVQ------ELLVGPSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRD 137

Query: 206 ELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFS---SLQELHLFDNKLDGSFPEKFRK 262
                 S      ++ L L  N++  ++      +   +L+ L+L  N +      +   
Sbjct: 138 LDEGCRS-----RVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVF 190

Query: 263 PSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNS 322
              L  L+L  N+L    P+      +T + + +++L   + + L     LE  DL GN 
Sbjct: 191 AK-LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 323 LEGMITESHVSNLSKLKYMDF-SFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQ 381
                     S   +++ +   +   L          P            L   F   L 
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLI 308

Query: 382 SQK--NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGID 439
           + K   +  L    +E                  ++         +  ++L       ++
Sbjct: 309 ALKRKEHALLSGQGSETERLECEREN--QARQREIDALKEQYRTVIDQVTLRKQAKITLE 366

Query: 440 LSSNDFEGPVPPVPGNVTSLNLSNNK 465
                 +  V         L+ +  +
Sbjct: 367 QKKKALDEQVSNGRRAHAELDGTLQQ 392

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (260), Expect = 1e-23
 Identities = 50/344 (14%), Positives = 103/344 (29%), Gaps = 45/344 (13%)

Query: 81  IVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISS 140
            + + SL++LR L L      + N   +  +    S+  L  ++  +S  +         
Sbjct: 73  TLDLESLSTLRTLDL------NNNY--VQELLVGPSIETLHAANNNISRVSCSRG----Q 120

Query: 141 NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS--FGNMCGLKTLHLFDN 198
               + L +N++   + D      + +Q+L+L LN+I  ++ +    +   L+ L+L  N
Sbjct: 121 GKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 199 NLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPE 258
            +     ++           L+ L L  NKL    P+    + +  + L +NKL     +
Sbjct: 180 FIYDVKGQVVF-------AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 259 KFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDL 318
             R    L   +L GN                   V+   +     +     +       
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

Query: 319 FGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPK 378
                E  +       L  LK  + +  S   + +                         
Sbjct: 292 GAYCCE-DLPAPFADRLIALKRKEHALLSGQGSET--------------------ERLEC 330

Query: 379 WLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLE 422
             ++Q     +D    +    V             L      L+
Sbjct: 331 ERENQARQREIDALKEQYRT-VIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 86.8 bits (215), Expect = 4e-18
 Identities = 43/323 (13%), Positives = 103/323 (31%), Gaps = 22/323 (6%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
                + ++ L L  + + ++N   L++  SS +L  L+L    + +     +F   + L
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAELAA--SSDTLEHLNLQYNFIYDVKGQVVF---AKL 193

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNL-T 201
             LDL+SN+LA  +    F +   +  ++L  N++  I K+      L+   L  N    
Sbjct: 194 KTLDLSSNKLAF-MGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC 251

Query: 202 GQLPELFLNLSGCSKNSLEILKLGGNKLTG-SLPDITEFSSLQELHLFDNKLDGSFPEKF 260
           G L + F            +  +    +   +  +  E +     H      +       
Sbjct: 252 GTLRDFFSKN-------QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

Query: 261 R-----KPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEF 315
                 K     +L+  G++      +         +D    +    + +   R      
Sbjct: 305 DRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKIT 364

Query: 316 LDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPH 375
           L+    +L+  ++    ++      +  +   + L  +     P QL    +   +    
Sbjct: 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYV 424

Query: 376 FPKWLQSQKNYYFLDISDTEISD 398
             +           D+   + + 
Sbjct: 425 -EQQSVQNNAIRDWDMYQHKETQ 446

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (305), Expect = 4e-29
 Identities = 77/373 (20%), Positives = 136/373 (36%), Gaps = 35/373 (9%)

Query: 104 NRPSLSSMNSS--TSLTLLDLSSCGLSNSAYHWLFKIS-SNLLALDLNSNQLAGPIPDYA 160
            +P    ++S+        D+     +   Y     I+ +N   +   ++ +   +P   
Sbjct: 12  RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAAL 70

Query: 161 FSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSL 219
             +   ++ LNL+  QI  I   +F     ++ L++  N +    P +F N+       L
Sbjct: 71  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-----LL 125

Query: 220 EILKLGGNKLTGSLPDIT--EFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLW 277
            +L L  N L+ SLP         L  L + +N L+    + F+  + L  L L  N+L 
Sbjct: 126 TVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL- 183

Query: 278 GSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSK 337
             +  LS+ P L   +VS + L       L     +E LD   NS    I         +
Sbjct: 184 THVD-LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNS----INVVRGPVNVE 233

Query: 338 LKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEIS 397
           L  +    N+L         P   L  + L + +L           +    L IS+  + 
Sbjct: 234 LTILKLQHNNLTDTAWLLNYP--GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

Query: 398 DAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPG---IDLSSNDFEGPVPPVPG 454
             +  +   + P L  L+LSHNHL      +  N   +     + L  N           
Sbjct: 292 A-LNLYGQPI-PTLKVLDLSHNHLL----HVERNQPQFDRLENLYLDHNSIVTLKLSTHH 345

Query: 455 NVTSLNLSNNKFS 467
            + +L LS+N + 
Sbjct: 346 TLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  115 bits (289), Expect = 4e-27
 Identities = 67/339 (19%), Positives = 110/339 (32%), Gaps = 53/339 (15%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLA 144
            S   +  L L    +  I+  + +      ++  L +    +     H +F+    L  
Sbjct: 72  DSFRQVELLNLNDLQIEEIDTYAFAYA---HTIQKLYMGFNAIRYLPPH-VFQNVPLLTV 127

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQ 203
           L L  N L+  +P   F N   L  L++S N +  I    F     L+ L L  N LT  
Sbjct: 128 LVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKP 263
              L          SL    +  N L+     +    +++EL    N ++        + 
Sbjct: 187 DLSLI--------PSLFHANVSYNLLS----TLAIPIAVEELDASHNSINVVRGPVNVE- 233

Query: 264 SPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL 323
             L IL L  N L      L  +P L  +D+S + L   +     ++ +LE L +  N L
Sbjct: 234 --LTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 290

Query: 324 EGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQ 383
             +    +   +  LK +D S N               L  +            +     
Sbjct: 291 VAL--NLYGQPIPTLKVLDLSHN--------------HLLHV-----------ERNQPQF 323

Query: 384 KNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLE 422
                L +    I     S        L  L LSHN  +
Sbjct: 324 DRLENLYLDHNSIVTLKLSTH----HTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 87.3 bits (216), Expect = 3e-18
 Identities = 48/218 (22%), Positives = 79/218 (36%), Gaps = 25/218 (11%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
           T  +  SL++L L+S+ L  ++   +       SL   ++S   LS         I   +
Sbjct: 166 TFQATTSLQNLQLSSNRLTHVDLSLI------PSLFHANVSYNLLST------LAIPIAV 213

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTG 202
             LD + N +   +          L  L L  N ++  +    N  GL  + L  N L  
Sbjct: 214 EELDASHNSINV-VRGPVNVE---LTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEK 268

Query: 203 QLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRK 262
            +   F+ +       LE L +  N+L           +L+ L L  N L         +
Sbjct: 269 IMYHPFVKMQ-----RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ 322

Query: 263 PSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLN 300
              L  L LD N +  +L  LS    L  L +S +  +
Sbjct: 323 FDRLENLYLDHNSI-VTLK-LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.9 bits (215), Expect = 5e-18
 Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 18/173 (10%)

Query: 81  IVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISS 140
           + T+    ++ +L  + +++  +  P          LT+L L    L+++A         
Sbjct: 204 LSTLAIPIAVEELDASHNSINVVRGPVNVE------LTILKLQHNNLTDTA---WLLNYP 254

Query: 141 NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNL 200
            L+ +DL+ N+L   I  + F  M  L+ L +S N++ A++     +  LK L L  N+L
Sbjct: 255 GLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313

Query: 201 TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLD 253
              +              LE L L  N +  +L  ++   +L+ L L  N  D
Sbjct: 314 L-HVERNQPQFD-----RLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 4e-06
 Identities = 36/223 (16%), Positives = 67/223 (30%), Gaps = 49/223 (21%)

Query: 383 QKNYYFLDISDTEISDAVPSWFWDLS-PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLS 441
           Q +  F D+     +  V   F D++  N   +   ++ +                  L 
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR----------------KLP 67

Query: 442 SNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLSGEL 495
           +   +         V  LNL++ +       +  I    F+       L +  N +    
Sbjct: 68  AALLDSF-----RQVELLNLNDLQ-------IEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115

Query: 496 PDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSL-KKCNELKIIDAGDNKFSGTIPAW 554
           P        L VL L  N+ S          +P  +     +L  +   +N     I   
Sbjct: 116 PHVFQNVPLLTVLVLERNDLS---------SLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 165

Query: 555 IGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
                  L  L L SN+    +  +L  +  +   + S N +S
Sbjct: 166 TFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS 205

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  117 bits (296), Expect = 7e-29
 Identities = 76/360 (21%), Positives = 122/360 (33%), Gaps = 43/360 (11%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
            +       D+++    + + +        +  +  ++   +  +       L      +
Sbjct: 16  NLQYDCVFYDVHI---DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA-LLDSFRQV 71

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLT 201
             L+LN  Q+   I  YAF+    +Q L +  N I  +    F N+  L  L L  N+L+
Sbjct: 72  ELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 202 GQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDIT--EFSSLQELHLFDNKL----DGS 255
                +F N        L  L +  N L   + D T    +SLQ L L  N+L       
Sbjct: 131 SLPRGIFHNTP-----KLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVDLSL 184

Query: 256 FP------------EKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTV 303
            P                 P  +  L+   N +   +    V   LT L +  + L  T 
Sbjct: 185 IPSLFHANVSYNLLSTLAIPIAVEELDASHNSI-NVVRG-PVNVELTILKLQHNNL--TD 240

Query: 304 SEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSL-ALNFSFGWLPPFQL 362
           +  L     L  +DL  N LE  I       + +L+ +  S N L ALN     +P   L
Sbjct: 241 TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--TL 297

Query: 363 ESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLE 422
           + + L H  L  H  +          L +    I     S        L  L LSHN  +
Sbjct: 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTH----HTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  116 bits (292), Expect = 3e-28
 Identities = 73/313 (23%), Positives = 116/313 (37%), Gaps = 28/313 (8%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
                 +++ LY+  + +  +      ++     LT+L L    LS+     +F  +  L
Sbjct: 88  AFAYAHTIQKLYMGFNAIRYLPPHVFQNV---PLLTVLVLERNDLSSLPRG-IFHNTPKL 143

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTG 202
             L +++N L   I D  F   T+LQ+L LS N+++ +      +  L   ++  N L+ 
Sbjct: 144 TTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLS- 199

Query: 203 QLPELF----LNLSGCS--------KNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDN 250
            L        L+ S  S           L ILKL  N LT     +  +  L E+ L  N
Sbjct: 200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYN 258

Query: 251 KLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRL 310
           +L+      F K   L  L +  N+L          P L  LD+S + L   V     + 
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317

Query: 311 SKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLL-- 368
            +LE L L  NS    I    +S    LK +  S N    N            ++     
Sbjct: 318 DRLENLYLDHNS----IVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQ 373

Query: 369 HCKLGPHFPKWLQ 381
           HCK+       L 
Sbjct: 374 HCKIDYQLEHGLC 386

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  109 bits (275), Expect = 5e-26
 Identities = 79/481 (16%), Positives = 152/481 (31%), Gaps = 137/481 (28%)

Query: 112 NSSTSLTLLDLSSCGLSNSAYHWLFKIS-SNLLALDLNSNQLAGPIPDYAFSNMTALQHL 170
           N        D+     +   Y     I+ +N   +   ++ +   +P     +   ++ L
Sbjct: 16  NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK-LPAALLDSFRQVELL 74

Query: 171 NLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKL 229
           NL+  QI  I   +F     ++ L++  N +    P +F N+       L +L L  N L
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP-----LLTVLVLERNDL 129

Query: 230 TGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFP 287
           + SLP         L  L + +N L+    + F+  + L  L L  N+L           
Sbjct: 130 S-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL----------- 177

Query: 288 FLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNS 347
             T +D             L  +  L   ++  N L      S ++    ++ +D S NS
Sbjct: 178 --THVD-------------LSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNS 216

Query: 348 LALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDL 407
           + +      +       +                       L +    ++D   +W  + 
Sbjct: 217 INV------VRGPVNVEL---------------------TILKLQHNNLTD--TAWLLNY 247

Query: 408 SPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFS 467
            P L  ++LS+N LE                 +  + F          +  L +SNN+  
Sbjct: 248 -PGLVEVDLSYNELE----------------KIMYHPFVKM-----QRLERLYISNNRLV 285

Query: 468 GPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEI 527
                                      L         L VL+L++N+            +
Sbjct: 286 --------------------------ALNLYGQPIPTLKVLDLSHNHLL---------HV 310

Query: 528 PPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHG----SIPRNLCRL 583
             +  + + L+ +    N    T+      T   L  L+L  N +      ++ RN+ R 
Sbjct: 311 ERNQPQFDRLENLYLDHNSIV-TLKL---STHHTLKNLTLSHNDWDCNSLRALFRNVARP 366

Query: 584 S 584
           +
Sbjct: 367 A 367

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.2 bits (219), Expect = 7e-19
 Identities = 69/407 (16%), Positives = 130/407 (31%), Gaps = 98/407 (24%)

Query: 193 LHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDN 250
              +D ++  Q  +++      + N+ +I+    + +   LP   +  F  ++ L+L D 
Sbjct: 21  CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDL 79

Query: 251 KLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRL 310
           +++      F     +  L +  N +   LP                            +
Sbjct: 80  QIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPP----------------------HVFQNV 116

Query: 311 SKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHC 370
             L  L L  N L   +      N  KL  +  S N               LE I     
Sbjct: 117 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNN--------------NLERIE---- 157

Query: 371 KLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSL 430
                     Q+  +   L +S   ++    S      P+L++ N+S+N L    + +++
Sbjct: 158 ------DDTFQATTSLQNLQLSSNRLTHVDLSLI----PSLFHANVSYNLLSTLAIPIAV 207

Query: 431 NYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNL 490
                  +D S N       PV   +T L L +N  +   + L +  G     +D+S N 
Sbjct: 208 EE-----LDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLNYPG--LVEVDLSYNE 259

Query: 491 LSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGT 550
           L   +    ++ Q L  L ++NN                                     
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLV---------------------------------A 286

Query: 551 IPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
           +  +    +P L +L L  N     + RN  +  +++ L    NSI 
Sbjct: 287 LNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 87.4 bits (217), Expect = 1e-18
 Identities = 39/173 (22%), Positives = 73/173 (42%), Gaps = 18/173 (10%)

Query: 81  IVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISS 140
           + T+    ++ +L  + +++  +  P          LT+L L    L+++A         
Sbjct: 198 LSTLAIPIAVEELDASHNSINVVRGPVNVE------LTILKLQHNNLTDTA---WLLNYP 248

Query: 141 NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNL 200
            L+ +DL+ N+L   I  + F  M  L+ L +S N++ A++     +  LK L L  N+L
Sbjct: 249 GLVEVDLSYNELEK-IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307

Query: 201 TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLD 253
              +              LE L L  N +  +L  ++   +L+ L L  N  D
Sbjct: 308 L-HVERNQPQFD-----RLENLYLDHNSIV-TLK-LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 55/346 (15%), Positives = 125/346 (36%), Gaps = 76/346 (21%)

Query: 269 LNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMIT 328
           +++    ++    D++       +   +S +    +  L    ++E L+L    +E  I 
Sbjct: 28  IDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EID 85

Query: 329 ESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYF 388
               +    ++ +   FN++        LPP   +++ LL                    
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRY------LPPHVFQNVPLLT------------------V 121

Query: 389 LDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGP 448
           L +   ++S      F +  P L  L++S+N+LE                 +  + F+  
Sbjct: 122 LVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLE----------------RIEDDTFQAT 164

Query: 449 VPPVPGNVTSLNLSNNKFSG-PISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAV 507
                 ++ +L LS+N+ +   +S + S+      + +VS NLLS  L   +    A+  
Sbjct: 165 T-----SLQNLQLSSNRLTHVDLSLIPSLF-----HANVSYNLLS-TLAIPI----AVEE 209

Query: 508 LNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSL 567
           L+ ++N+ +          +   +    EL I+    N  +      +    P L  + L
Sbjct: 210 LDASHNSIN---------VVRGPV--NVELTILKLQHNNLT-DTAWLLN--YPGLVEVDL 255

Query: 568 RSNQFHGSIPRN-LCRLSKIQLLDFSLNSISGAIPKCINNLTAMVE 612
             N+    I  +   ++ +++ L  S N +  A+      +  +  
Sbjct: 256 SYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKV 299

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 37/231 (16%), Positives = 69/231 (29%), Gaps = 50/231 (21%)

Query: 383 QKNYYFLDISDTEISDAVPSWFWDLS-PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLS 441
           Q +  F D+     +  V   F D++  N   +   ++ +                  L 
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR----------------KLP 61

Query: 442 SNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLSGEL 495
           +   +         V  LNL++ +       +  I    F+       L +  N +    
Sbjct: 62  AALLDSF-----RQVELLNLNDLQ-------IEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109

Query: 496 PDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSL-KKCNELKIIDAGDNKFSGTIPAW 554
           P        L VL L  N+ S          +P  +     +L  +   +N     I   
Sbjct: 110 PHVFQNVPLLTVLVLERNDLS---------SLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 159

Query: 555 IGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCIN 605
                  L  L L SN+    +  +L  +  +   + S N +S  +   I 
Sbjct: 160 TFQATTSLQNLQLSSNRLT-HVDLSL--IPSLFHANVSYNLLS-TLAIPIA 206

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  113 bits (286), Expect = 5e-28
 Identities = 59/338 (17%), Positives = 116/338 (34%), Gaps = 67/338 (19%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF 196
           +  +   LDL +N++   I D  F N+  L  L L  N+IS I   +F  +  L+ L+L 
Sbjct: 50  LPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDIT--EFSSLQELHLFDNKLDG 254
            N L     ++          +L+ L++  N++T  +        + +  + L  N L  
Sbjct: 109 KNQLKELPEKMP--------KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKS 159

Query: 255 SF--PEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSK 312
           S      F+    L  + +    +  ++P   + P LT L +  +++    +  L  L+ 
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNI-TTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNN 217

Query: 313 LEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKL 372
           L  L L  NS+   +    ++N   L+ +  + N L                        
Sbjct: 218 LAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV----------------------- 253

Query: 373 GPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLS-----PNLYYLNLSHNHLEGTVLD 427
               P  L   K    + + +  IS    + F          +   ++L  N ++     
Sbjct: 254 --KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW--- 308

Query: 428 LSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNK 465
                      ++  + F            ++ L N K
Sbjct: 309 -----------EIQPSTFRC-----VYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  110 bits (278), Expect = 6e-27
 Identities = 52/271 (19%), Positives = 101/271 (37%), Gaps = 27/271 (9%)

Query: 88  ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDL 147
                L L ++ +  I      ++    +L  L L +  +S  +    F     L  L L
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNL---KNLHTLILINNKISKISPG-AFAPLVKLERLYL 107

Query: 148 NSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQL-- 204
           + NQL   +P+        LQ L +  N+I+ + K  F  +  +  + L  N L      
Sbjct: 108 SKNQLKE-LPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 205 PELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPS 264
              F  +       L  +++    +T ++P      SL ELHL  NK+        +  +
Sbjct: 164 NGAFQGMK-----KLSYIRIADTNIT-TIPQGL-PPSLTELHLDGNKITKVDAASLKGLN 216

Query: 265 PLVILNLDGNQLWGSLPD--LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNS 322
            L  L L  N +  ++ +  L+  P L  L +++++L   V  GL     ++ + L  N+
Sbjct: 217 NLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274

Query: 323 LE-----GMITESHVSNLSKLKYMDFSFNSL 348
           +            + +  +    +    N +
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 90.1 bits (224), Expect = 8e-20
 Identities = 37/215 (17%), Positives = 80/215 (37%), Gaps = 22/215 (10%)

Query: 87  LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSA-YHWLFKISSNLLAL 145
             +L++L +  + +  + +   + +     + +++L +  L +S   +  F+    L  +
Sbjct: 120 PKTLQELRVHENEITKVRKSVFNGL---NQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176

Query: 146 DLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQL 204
            +    +   IP     +   L  L+L  N+I+ +   S   +  L  L L  N+++   
Sbjct: 177 RIADTNITT-IPQGLPPS---LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232

Query: 205 PELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKL----DGSF--P 257
                N        L  L L  NKL   +P  + +   +Q ++L +N +       F  P
Sbjct: 233 NGSLANTP-----HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286

Query: 258 EKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRL 292
               K +    ++L  N +       S F  +   
Sbjct: 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 321

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 30/171 (17%), Positives = 67/171 (39%), Gaps = 12/171 (7%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLA 144
             +  L  + +A + + +I +    S      LT L L    ++        K  +NL  
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPS------LTELHLDGNKITKVDAA-SLKGLNNLAK 220

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQL 204
           L L+ N ++  + + + +N   L+ L+L+ N++  +     +   ++ ++L +NN++   
Sbjct: 221 LGLSFNSISA-VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIG 279

Query: 205 PELFLNLSGCSK-NSLEILKLGGNKLT-GSLPDIT--EFSSLQELHLFDNK 251
              F      +K  S   + L  N +    +   T         + L + K
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 62/349 (17%), Positives = 112/349 (32%), Gaps = 72/349 (20%)

Query: 266 LVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
           L ++      L   +P   + P    LD+ ++++          L  L  L L  N +  
Sbjct: 33  LRVVQCSDLGL-EKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS- 89

Query: 326 MITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKN 385
            I+    + L KL+ +  S N L                      +L    PK LQ    
Sbjct: 90  KISPGAFAPLVKLERLYLSKNQLK---------------------ELPEKMPKTLQE--- 125

Query: 386 YYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLD-------LSLNYAGYPGI 438
              L + + EI+    S F  L   +  + L  N L+ + ++         L+Y     I
Sbjct: 126 ---LRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSY-----I 176

Query: 439 DLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLS 492
            ++  +       +P ++T L+L  NK +        +             L +S N +S
Sbjct: 177 RIADTNITTIPQGLPPSLTELHLDGNKIT-------KVDAASLKGLNNLAKLGLSFNSIS 229

Query: 493 GELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFS---- 548
                 L     L  L+L NN            ++P  L     ++++   +N  S    
Sbjct: 230 AVDNGSLANTPHLRELHLNNNKLV---------KVPGGLADHKYIQVVYLHNNNISAIGS 280

Query: 549 -GTIPAWIGDTLPKLAILSLRSNQF-HGSIPRNLCR-LSKIQLLDFSLN 594
               P          + +SL SN   +  I  +  R +     +     
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 48/239 (20%), Positives = 89/239 (37%), Gaps = 49/239 (20%)

Query: 389 LDISDTEISDAVPSWFWDLSPNLYYLNLSHNHL----EGTVLDL-SLNYAGYPGIDLSSN 443
           LD+ + +I++     F +L  NL+ L L +N +     G    L  L       + LS N
Sbjct: 57  LDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLER-----LYLSKN 110

Query: 444 DFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLL-SGELP 496
             +     +P  +  L +  N+ +        +    F+       +++  N L S  + 
Sbjct: 111 QLKELPEKMPKTLQELRVHENEIT-------KVRKSVFNGLNQMIVVELGTNPLKSSGIE 163

Query: 497 DCLLRW-QALAVLNLANNNFS----------------GNFLTFFVGEIPP-SLKKCNELK 538
           +   +  + L+ + +A+ N +                GN +T    ++   SLK  N L 
Sbjct: 164 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT----KVDAASLKGLNNLA 219

Query: 539 IIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
            +    N  S  +        P L  L L +N+    +P  L     IQ++    N+IS
Sbjct: 220 KLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (283), Expect = 1e-27
 Identities = 56/248 (22%), Positives = 98/248 (39%), Gaps = 22/248 (8%)

Query: 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSL 174
               +  ++   L  +    L + + N+  LDL+ N L+  I     +  T L+ LNLS 
Sbjct: 10  NRYKIEKVTDSSLKQALAS-LRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSS 67

Query: 175 NQISAISKSFGNMCGLKTLHLFDNNLT--GQLPEL-FLNLSGC--------SKNSLEILK 223
           N +        ++  L+TL L +N +      P +  L+ +               + + 
Sbjct: 68  NVLYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIY 126

Query: 224 LGGNKLTGSLPD--ITEFSSLQELHLFDNKLDG-SFPEKFRKPSPLVILNLDGNQLWGSL 280
           L  NK+T  L D      S +Q L L  N++D  +F E       L  LNL  N ++  +
Sbjct: 127 LANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184

Query: 281 PDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKY 340
               VF  L  LD+S ++L   +       + + ++ L  N L  +  E  +     L++
Sbjct: 185 KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEH 241

Query: 341 MDFSFNSL 348
            D   N  
Sbjct: 242 FDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  105 bits (263), Expect = 6e-25
 Identities = 45/306 (14%), Positives = 107/306 (34%), Gaps = 20/306 (6%)

Query: 161 FSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSL 219
             N    +   ++ + +     S   +   +K L L  N L+          +      L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-----KL 60

Query: 220 EILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGS 279
           E+L L  N L     D+   S+L+ L L +N +     ++      +  L+   N +   
Sbjct: 61  ELLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI-SR 113

Query: 280 LPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLK 339
           +   S       + ++++++        G  S++++LDL  N ++ +      ++   L+
Sbjct: 114 VS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 340 YMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDA 399
           +++  +N +  +     +   +L+++ L   KL        QS     ++ + + ++   
Sbjct: 173 HLNLQYNFIY-DVKGQVVFA-KLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVL- 228

Query: 400 VPSWFWDLSPNLYYLNLSHNHLE-GTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTS 458
           +         NL + +L  N    GT+ D          +   +             V +
Sbjct: 229 IEKALRFS-QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 459 LNLSNN 464
           L     
Sbjct: 288 LGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  101 bits (255), Expect = 7e-24
 Identities = 45/268 (16%), Positives = 93/268 (34%), Gaps = 24/268 (8%)

Query: 79  TCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI 138
              + + SL++LR L L      + N   +  +    S+  L  ++  +S  +       
Sbjct: 71  YETLDLESLSTLRTLDL------NNNY--VQELLVGPSIETLHAANNNISRVS----CSR 118

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS--FGNMCGLKTLHLF 196
                 + L +N++   + D      + +Q+L+L LN+I  ++ +    +   L+ L+L 
Sbjct: 119 GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSF 256
            N +     ++           L+ L L  NKL    P+    + +  + L +NKL    
Sbjct: 178 YNFIYDVKGQVVF-------AKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 257 PEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFL 316
            +  R    L   +L GN  +        F    R+     +    ++        +  L
Sbjct: 230 EKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 317 DLFGNSLEGMITESHVSNLSKLKYMDFS 344
             +G      +       L  L +    
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (252), Expect = 1e-23
 Identities = 61/293 (20%), Positives = 113/293 (38%), Gaps = 26/293 (8%)

Query: 86  SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLAL 145
           S  ++++L L+ + L  I+   L+     T L LL+LSS  L  +      +  S L  L
Sbjct: 32  SAWNVKELDLSGNPLSQISAADLAPF---TKLELLNLSSNVLYETLD---LESLSTLRTL 85

Query: 146 DLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLP 205
           DLN+N +             +++ L+ + N IS +S S G   G K ++L +N +T    
Sbjct: 86  DLNNNYVQ------ELLVGPSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKITMLRD 137

Query: 206 ELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFS---SLQELHLFDNKLDGSFPEKFRK 262
                 S      ++ L L  N++  ++      +   +L+ L+L  N +      +   
Sbjct: 138 LDEGCRS-----RVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVF 190

Query: 263 PSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNS 322
              L  L+L  N+L    P+      +T + + +++L   + + L     LE  DL GN 
Sbjct: 191 AK-LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 323 LEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPH 375
                     S   +++ +           +        L   G   C+  P 
Sbjct: 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 87.0 bits (216), Expect = 7e-19
 Identities = 57/391 (14%), Positives = 110/391 (28%), Gaps = 106/391 (27%)

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLTGSLPDI-TEFSSLQELHLFDNKLDGSFPEKFRK 262
           + E+  N      N  +I K+  + L  +L  +     +++EL L  N L          
Sbjct: 2   IHEIKQNG-----NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

Query: 263 PSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNS 322
            + L +LNL  N L     DL     L  LD++++ +     + L     +E L    N+
Sbjct: 57  FTKLELLNLSSNVL-YETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN 110

Query: 323 LEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQS 382
               I+    S     K +  + N +                                  
Sbjct: 111 ----ISRVSCSRGQGKKNIYLANNKI---------------------------------- 132

Query: 383 QKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSS 442
                      T + D            + YL+L  N ++                 ++ 
Sbjct: 133 -----------TMLRDLD---EGCR-SRVQYLDLKLNEID----------------TVNF 161

Query: 443 NDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYF----SYLDVSDNLLSGELPDC 498
            +           +  LNL  N           + G+        LD+S N L+  +   
Sbjct: 162 AELAASSD----TLEHLNLQYNFIY-------DVKGQVVFAKLKTLDLSSNKLA-FMGPE 209

Query: 499 LLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDT 558
                 +  ++L NN             I  +L+    L+  D   N F           
Sbjct: 210 FQSAAGVTWISLRNNKLV---------LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 559 LPKLAILSLRSNQFHGSIPRNLCRLSKIQLL 589
             ++  ++ ++ +         C +  +   
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 51/351 (14%), Positives = 105/351 (29%), Gaps = 109/351 (31%)

Query: 255 SFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKL 313
           +  E  +  +   I  +  + L  +L         +  LD+S + L+   +  L   +KL
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 314 EFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLG 373
           E L+L  N L        + +LS L+ +D + N               ++ + +      
Sbjct: 61  ELLNLSSNVLYET---LDLESLSTLRTLDLNNN--------------YVQELLVG----- 98

Query: 374 PHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYA 433
                                              P++  L+ ++N++            
Sbjct: 99  -----------------------------------PSIETLHAANNNIS----------- 112

Query: 434 GYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVS 487
                 +S +  +           ++ L+NNK +        +            YLD+ 
Sbjct: 113 -----RVSCSRGQ--------GKKNIYLANNKIT-------MLRDLDEGCRSRVQYLDLK 152

Query: 488 DNLLSG-ELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNK 546
            N +      +       L  LNL  N            ++   +    +LK +D   NK
Sbjct: 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIY---------DVKGQVV-FAKLKTLDLSSNK 202

Query: 547 FSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
            +  +          +  +SLR+N+    I + L     ++  D   N   
Sbjct: 203 LA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 40/299 (13%), Positives = 88/299 (29%), Gaps = 70/299 (23%)

Query: 310 LSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLH 369
            ++ +   +  +SL+     S   +   +K +D S N               L  I    
Sbjct: 9   GNRYKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGN--------------PLSQIS--- 50

Query: 370 CKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLS 429
                     L        L++S   + + +      L   L  L+L++N+++       
Sbjct: 51  -------AADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQ------E 94

Query: 430 LNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDN 489
           L                     V  ++ +L+ +NN     IS +    G+    + +++N
Sbjct: 95  L--------------------LVGPSIETLHAANNN----ISRVSCSRGQGKKNIYLANN 130

Query: 490 LLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSG 549
            ++            +  L+L  N                     + L+ ++   N    
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEID-------TVNFAELAASSDTLEHLNLQYNFIY- 182

Query: 550 TIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLT 608
            +   +     KL  L L SN+    +       + +  +    N +   I K +    
Sbjct: 183 DVKGQVV--FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  111 bits (280), Expect = 4e-27
 Identities = 64/332 (19%), Positives = 113/332 (34%), Gaps = 56/332 (16%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLF 196
           IS +   LDL +N ++  +    F  +  L  L L  N+IS I  K+F  +  L+ L++ 
Sbjct: 52  ISPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDIT--EFSSLQELHLFDNKL-D 253
            N+L    P L         +SL  L++  N++   +P        ++  + +  N L +
Sbjct: 111 KNHLVEIPPNLP--------SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 254 GSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKL 313
             F         L  L +   +L   +P   +   L  L +  +++     E L R SKL
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKL-TGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 314 EFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLG 373
             L L  N +  MI    +S L  L+ +    N L+                        
Sbjct: 220 YRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS------------------------ 254

Query: 374 PHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYA 433
              P  L   K    + +    I+    + F  +   +     +        + L  N  
Sbjct: 255 -RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNG-------ISLFNNPV 306

Query: 434 GYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNK 465
            Y  +      F   V     +  ++   N K
Sbjct: 307 PYWEV--QPATFRC-VT----DRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (250), Expect = 3e-23
 Identities = 59/273 (21%), Positives = 98/273 (35%), Gaps = 28/273 (10%)

Query: 88  ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDL 147
                L L ++ +  + +     +     L  L L +  +S       F     L  L +
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGL---QHLYALVLVNNKISKIHEK-AFSPLRKLQKLYI 109

Query: 148 NSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQL-- 204
           + N L   IP    S+   L  L +  N+I  + K  F  +  +  + +  N L      
Sbjct: 110 SKNHLVE-IPPNLPSS---LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 205 PELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPS 264
           P  F  L       L  L++   KLT  +P      +L ELHL  NK+     E   + S
Sbjct: 166 PGAFDGL------KLNYLRISEAKLT-GIPKDL-PETLNELHLDHNKIQAIELEDLLRYS 217

Query: 265 PLVILNLDGNQLWGSLPD--LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNS 322
            L  L L  NQ+   + +  LS  P L  L + +++L+  V  GL  L  L+ + L  N+
Sbjct: 218 KLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275

Query: 323 LE-----GMITESHVSNLSKLKYMDFSFNSLAL 350
           +                 +    +    N +  
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 51/266 (19%), Positives = 95/266 (35%), Gaps = 38/266 (14%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLA 144
           + L  L+ LY++ + L+ I     SS      L  L +    +       +F    N+  
Sbjct: 99  SPLRKLQKLYISKNHLVEIPPNLPSS------LVELRIHDNRIRKVPKG-VFSGLRNMNC 151

Query: 145 LDLNSNQLA-GPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQ 203
           +++  N L        AF  +  L +L +S  +++ I K       L  LHL  N +   
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPK--DLPETLNELHLDHNKIQAI 208

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFR 261
             E  L  S      L  L LG N++   + +  ++   +L+ELHL +NKL    P    
Sbjct: 209 ELEDLLRYS-----KLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261

Query: 262 KPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGN 321
               L ++ L  N +   +   + F  +                   + +    + LF N
Sbjct: 262 DLKLLQVVYLHTNNI-TKVGV-NDFCPVGFGV---------------KRAYYNGISLFNN 304

Query: 322 SLEGM-ITESHVSNLSKLKYMDFSFN 346
            +    +  +    ++    + F   
Sbjct: 305 PVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 76.2 bits (188), Expect = 4e-15
 Identities = 31/168 (18%), Positives = 57/168 (33%), Gaps = 14/168 (8%)

Query: 89  SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSN-SAYHWLFKISSNLLALDL 147
            L  L ++ + L  I +    +      L  L L    +             S L  L L
Sbjct: 173 KLNYLRISEAKLTGIPKDLPET------LNELHLDHNKIQAIELED--LLRYSKLYRLGL 224

Query: 148 NSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPEL 207
             NQ+   I + + S +  L+ L+L  N++S +     ++  L+ ++L  NN+T      
Sbjct: 225 GHNQIRM-IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVND 283

Query: 208 FLNLSGCSKN-SLEILKLGGNKLTGSLPDITEFS---SLQELHLFDNK 251
           F  +    K      + L  N +         F        +   + K
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 67/338 (19%), Positives = 106/338 (31%), Gaps = 101/338 (29%)

Query: 266 LVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
           L ++      L  ++P   + P  T LD+ ++ ++    +    L  L  L L  N +  
Sbjct: 35  LRVVQCSDLGL-KAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS- 91

Query: 326 MITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKN 385
            I E   S L KL+ +  S N L        +PP    S               L     
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVE------IPPNLPSS---------------LVE--- 127

Query: 386 YYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVL------DLSLNYAGYPGID 439
              L I D  I       F  L  N+  + +  N LE +         L LNY     + 
Sbjct: 128 ---LRIHDNRIRKVPKGVFSGL-RNMNCIEMGGNPLENSGFEPGAFDGLKLNY-----LR 178

Query: 440 LSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCL 499
           +S     G    +P  +  L+L +NK         +I  E                    
Sbjct: 179 ISEAKLTGIPKDLPETLNELHLDHNKIQ-------AIELEDLLRY--------------- 216

Query: 500 LRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTL 559
                L  L L +N                       +++I+ G    S          L
Sbjct: 217 ---SKLYRLGLGHNQ----------------------IRMIENGS--LSF---------L 240

Query: 560 PKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS 597
           P L  L L +N+    +P  L  L  +Q++    N+I+
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT 277

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  113 bits (284), Expect = 6e-27
 Identities = 55/243 (22%), Positives = 93/243 (38%), Gaps = 22/243 (9%)

Query: 88  ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDL 147
           ++ R L L  + +  I   +   +     L +L L    +        F   ++L  L+L
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHL---HHLEVLQLGRNSIRQIEVG-AFNGLASLNTLEL 130

Query: 148 NSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPE 206
             N L   IP  AF  ++ L+ L L  N I +I   +F  +  L  L L +      + E
Sbjct: 131 FDNWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189

Query: 207 -LFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSP 265
             F  L      +L+ L LG   +   +P++T    L+EL +  N      P  F   S 
Sbjct: 190 GAFEGLF-----NLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 266 LVILNLDGNQLW----GSLPDLSVFPFLTRLDVSDSRLNGTVSEG-LGRLSKLEFLDLFG 320
           L  L +  +Q+      +   L     L  L+++ + L+ ++       L  L  L L  
Sbjct: 244 LKKLWVMNSQVSLIERNAFDGL---ASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHH 299

Query: 321 NSL 323
           N  
Sbjct: 300 NPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (268), Expect = 7e-25
 Identities = 51/243 (20%), Positives = 87/243 (35%), Gaps = 22/243 (9%)

Query: 114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLS 173
            ++   L+L    +        F+   +L  L L  N +   I   AF+ + +L  L L 
Sbjct: 74  PSNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELF 131

Query: 174 LNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGG-NKLTG 231
            N ++ I   +F  +  L+ L L +N +       F  +      SL  L LG   KL  
Sbjct: 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-----SLMRLDLGELKKLE- 185

Query: 232 SLPDIT--EFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQL----WGSLPDLSV 285
            + +       +L+ L+L    +             L  L + GN       GS   L  
Sbjct: 186 YISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL-- 241

Query: 286 FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSF 345
              L +L V +S+++         L+ L  L+L  N+L   +     + L  L  +    
Sbjct: 242 -SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHH 299

Query: 346 NSL 348
           N  
Sbjct: 300 NPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.0 bits (239), Expect = 3e-21
 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 15/193 (7%)

Query: 87  LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALD 146
           LASL  L L  + L  I   +   +   + L  L L +  + +   +  F    +L+ LD
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYL---SKLRELWLRNNPIESIPSYA-FNRVPSLMRLD 177

Query: 147 L-NSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLP 205
           L    +L   I + AF  +  L++LNL +  I  +  +   + GL+ L +  N+     P
Sbjct: 178 LGELKKLEY-ISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRP 235

Query: 206 ELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFRKP 263
             F  LS     SL+ L +  ++++  +        +SL EL+L  N L     + F   
Sbjct: 236 GSFHGLS-----SLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289

Query: 264 SPLVILNLDGNQL 276
             LV L+L  N  
Sbjct: 290 RYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 73.2 bits (180), Expect = 8e-14
 Identities = 70/378 (18%), Positives = 115/378 (30%), Gaps = 129/378 (34%)

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFD 197
           S+    +      L+  +P    SN    ++LNL  N I  I + +F ++  L+ L L  
Sbjct: 53  SNQFSKVVCTRRGLSE-VPQGIPSN---TRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108

Query: 198 NNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFP 257
           N++       F  L+     SL  L+L  N LT  +P                       
Sbjct: 109 NSIRQIEVGAFNGLA-----SLNTLELFDNWLT-VIP----------------------S 140

Query: 258 EKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLD 317
             F   S L  L L  N +  S+P                           R+  L  LD
Sbjct: 141 GAFEYLSKLRELWLRNNPI-ESIPS----------------------YAFNRVPSLMRLD 177

Query: 318 LFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFP 377
           L        I+E     L  LKY++    ++    +   L    LE              
Sbjct: 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLV--GLE-------------- 221

Query: 378 KWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPG 437
                      L++S     +  P  F  L  +L  L + ++ +                
Sbjct: 222 ----------ELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVS--------------- 255

Query: 438 IDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD 497
             +  N F+G       ++  LNL++N  S       S+  + F+ L             
Sbjct: 256 -LIERNAFDGL-----ASLVELNLAHNNLS-------SLPHDLFTPLR------------ 290

Query: 498 CLLRWQALAVLNLANNNF 515
                  L  L+L +N +
Sbjct: 291 ------YLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 52/308 (16%), Positives = 92/308 (29%), Gaps = 66/308 (21%)

Query: 269 LNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMIT 328
           +      L   +P   +      L++ ++ +    ++    L  LE L L  NS+   I 
Sbjct: 59  VVCTRRGL-SEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIE 115

Query: 329 ESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYF 388
               + L+ L  ++   N               L  I               +       
Sbjct: 116 VGAFNGLASLNTLELFDN--------------WLTVIP----------SGAFEYLSKLRE 151

Query: 389 LDISDTEISDAVPSWFWDLSPNLYYLNLSH-NHLEGTVLDLSLNYAGYPGIDLSSNDFEG 447
           L + +  I       F  + P+L  L+L     LE                 +S   FEG
Sbjct: 152 LWLRNNPIESIPSYAFNRV-PSLMRLDLGELKKLE----------------YISEGAFEG 194

Query: 448 PVPPVPGNVTSLNLSNNKFSGPISSLCSISG-EYFSYLDVSDNLLSGELPDCLLRWQALA 506
                  N+  LNL        I  + +++       L++S N      P       +L 
Sbjct: 195 L-----FNLKYLNLGMCN----IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK 245

Query: 507 VLNLANNNFSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAIL 565
            L + N+  S          I   +      L  ++   N  S ++P  +   L  L  L
Sbjct: 246 KLWVMNSQVS---------LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVEL 295

Query: 566 SLRSNQFH 573
            L  N ++
Sbjct: 296 HLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 30/123 (24%)

Query: 79  TCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI 138
             +  +T L  L +L ++ +    I   S   +                           
Sbjct: 209 KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL--------------------------- 241

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFD 197
            S+L  L + ++Q++  I   AF  + +L  LNL+ N +S++    F  +  L  LHL  
Sbjct: 242 -SSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

Query: 198 NNL 200
           N  
Sbjct: 300 NPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  112 bits (281), Expect = 1e-26
 Identities = 59/240 (24%), Positives = 94/240 (39%), Gaps = 16/240 (6%)

Query: 88  ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDL 147
            + R L L  + +  I   S   +     L +L LS   +        F   +NL  L+L
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHL---RHLEILQLSRNHIRTIEIG-AFNGLANLNTLEL 119

Query: 148 NSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPE 206
             N+L   IP+ AF  ++ L+ L L  N I +I S +F  +  L+ L L +      + E
Sbjct: 120 FDNRLTT-IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178

Query: 207 -LFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSP 265
             F  LS     +L  L L    L   +P++T    L EL L  N L    P  F+    
Sbjct: 179 GAFEGLS-----NLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 266 LVILNLDGNQLWGSLPD--LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL 323
           L  L +  +Q+   +          L  ++++ + L     +    L  LE + L  N  
Sbjct: 233 LQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  106 bits (267), Expect = 7e-25
 Identities = 58/244 (23%), Positives = 94/244 (38%), Gaps = 24/244 (9%)

Query: 114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLS 173
           ST+  LL+L    +        FK   +L  L L+ N +   I   AF+ +  L  L L 
Sbjct: 63  STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELF 120

Query: 174 LNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGG-NKLTG 231
            N+++ I   +F  +  LK L L +N +       F  +      SL  L LG   +L+ 
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP-----SLRRLDLGELKRLS- 174

Query: 232 SLPDITEF---SSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQL----WGSLPDLS 284
            + +   F   S+L+ L+L    L             L  L+L GN L     GS   L 
Sbjct: 175 YISEGA-FEGLSNLRYLNLAMCNL--REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL- 230

Query: 285 VFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFS 344
               L +L +  S++          L  L  ++L  N+L  ++     + L  L+ +   
Sbjct: 231 --MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLH 287

Query: 345 FNSL 348
            N  
Sbjct: 288 HNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.0 bits (234), Expect = 1e-20
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 15/195 (7%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLA 144
             LA+L  L L  + L +I   +   +   + L  L L +  + +   +  F    +L  
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYL---SKLKELWLRNNPIESIPSYA-FNRIPSLRR 164

Query: 145 LDL-NSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQ 203
           LDL    +L+  I + AF  ++ L++LNL++  +  I  +   +  L  L L  N+L+  
Sbjct: 165 LDLGELKRLSY-ISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAI 222

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFR 261
            P  F  L       L+ L +  +++   +         SL E++L  N L     + F 
Sbjct: 223 RPGSFQGLM-----HLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 262 KPSPLVILNLDGNQL 276
               L  ++L  N  
Sbjct: 277 PLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 69/378 (18%), Positives = 116/378 (30%), Gaps = 129/378 (34%)

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFD 197
           S+    +      L   +PD   +N    + LNL  NQI  I   SF ++  L+ L L  
Sbjct: 42  SNQFSKVICVRKNLRE-VPDGISTN---TRLLNLHENQIQIIKVNSFKHLRHLEILQLSR 97

Query: 198 NNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFP 257
           N++       F  L+                            +L  L LFDN+L     
Sbjct: 98  NHIRTIEIGAFNGLA----------------------------NLNTLELFDNRLTTIPN 129

Query: 258 EKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLD 317
             F   S L  L L  N +  S+P                      S    R+  L  LD
Sbjct: 130 GAFVYLSKLKELWLRNNPI-ESIP----------------------SYAFNRIPSLRRLD 166

Query: 318 LFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFP 377
           L        I+E     LS L+Y++ +  +L    +   L   +L+              
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLI--KLD-------------- 210

Query: 378 KWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPG 437
                      LD+S   +S   P  F  L  +L  L +  + ++               
Sbjct: 211 ----------ELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQ--------------- 244

Query: 438 IDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD 497
             +  N F+        ++  +NL++N  +        +  + F+ L             
Sbjct: 245 -VIERNAFDNL-----QSLVEINLAHNNLT-------LLPHDLFTPLH------------ 279

Query: 498 CLLRWQALAVLNLANNNF 515
                  L  ++L +N +
Sbjct: 280 ------HLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 8e-11
 Identities = 49/298 (16%), Positives = 88/298 (29%), Gaps = 65/298 (21%)

Query: 279 SLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKL 338
            +PD  +      L++ ++++          L  LE L L  N +   I     + L+ L
Sbjct: 57  EVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANL 114

Query: 339 KYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISD 398
             ++   N              +L +I                       L + +  I  
Sbjct: 115 NTLELFDN--------------RLTTIP----------NGAFVYLSKLKELWLRNNPIES 150

Query: 399 AVPSWFWDLSPNLYYLNLSH-NHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVT 457
                F  + P+L  L+L     L                  +S   FEG       N+ 
Sbjct: 151 IPSYAFNRI-PSLRRLDLGELKRLS----------------YISEGAFEGL-----SNLR 188

Query: 458 SLNLSNNKFSGPISSLCSISG-EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFS 516
            LNL+       +  + +++       LD+S N LS   P        L  L +  +   
Sbjct: 189 YLNLAMCN----LREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244

Query: 517 GNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFH 573
                     I   +      L  I+   N  +  +P  +   L  L  + L  N ++
Sbjct: 245 ---------VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 30/123 (24%)

Query: 79  TCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI 138
             I  +T L  L +L L+ + L +I   S   +                           
Sbjct: 198 REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL--------------------------- 230

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLFD 197
             +L  L +  +Q+   I   AF N+ +L  +NL+ N ++ +    F  +  L+ +HL  
Sbjct: 231 -MHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 198 NNL 200
           N  
Sbjct: 289 NPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 41/217 (18%), Positives = 69/217 (31%), Gaps = 49/217 (22%)

Query: 389 LDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGP 448
           L++ + +I     + F  L  +L  L LS NH+                  +    F G 
Sbjct: 69  LNLHENQIQIIKVNSFKHL-RHLEILQLSRNHIR----------------TIEIGAFNGL 111

Query: 449 VPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLSGELPDCLLRW 502
                 N+ +L L +N+       L +I    F        L + +N +         R 
Sbjct: 112 -----ANLNTLELFDNR-------LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 503 QALAVLNLANNNFSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPK 561
            +L  L+L         L+     I   + +  + L+ ++         IP      L K
Sbjct: 160 PSLRRLDLGELKR----LS----YISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP--LIK 208

Query: 562 LAILSLRSNQFHGSIPRN-LCRLSKIQLLDFSLNSIS 597
           L  L L  N    +I       L  +Q L    + I 
Sbjct: 209 LDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ 244

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (284), Expect = 2e-26
 Identities = 77/402 (19%), Positives = 127/402 (31%), Gaps = 78/402 (19%)

Query: 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSL 174
               +L++   GL+         + +++  L +  N L   +P         L+ L +S 
Sbjct: 40  NGNAVLNVGESGLT----TLPDCLPAHITTLVIPDNNLTS-LPA----LPPELRTLEVSG 90

Query: 175 NQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP 234
           NQ++++      +  L        +L                  L  L + GN+LT SLP
Sbjct: 91  NQLTSLPVLPPGLLELSIFSNPLTHLPALPS------------GLCKLWIFGNQLT-SLP 137

Query: 235 DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDV 294
                  LQEL + DN+L  S P      S L  L    NQL  SLP L     L  L V
Sbjct: 138 V--LPPGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQL-TSLPML--PSGLQELSV 188

Query: 295 SDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSF 354
           SD++L  ++      L KL   +    SL         +  S LK +  S N L      
Sbjct: 189 SDNQLA-SLPTLPSELYKLWAYNNRLTSLP--------ALPSGLKELIVSGNRL------ 233

Query: 355 GWLPPF--QLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLY 412
             LP    +L+ + +   +L    P       +   L +   +++  +P     L  +  
Sbjct: 234 TSLPVLPSELKELMVSGNRLT-SLPMLPSGLLS---LSVYRNQLTR-LPESLIHL-SSET 287

Query: 413 YLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISS 472
            +NL  N L                                  +TS    +        +
Sbjct: 288 TVNLEGNPL------------------------SERTLQALREITSAPGYSGPIIRFDMA 323

Query: 473 LCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNN 514
             S   E  +    + + L               +    +N 
Sbjct: 324 GASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 97.7 bits (243), Expect = 2e-21
 Identities = 68/398 (17%), Positives = 116/398 (29%), Gaps = 103/398 (25%)

Query: 206 ELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSP 265
            +   +  C  N   +L +G + LT +LPD    + +  L + DN L  S P    +   
Sbjct: 29  AVVQKMRACLNNGNAVLNVGESGLT-TLPD-CLPAHITTLVIPDNNLT-SLPALPPE--- 82

Query: 266 LVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
           L  L + GNQL  SLP L                          L +L         L  
Sbjct: 83  LRTLEVSGNQL-TSLPVL-----------------------PPGLLELSIFSNPLTHLP- 117

Query: 326 MITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPF--QLESIGLLHCKLGPHFPKWLQSQ 383
                  +  S L  +    N L        LP     L+ + +   +L    P      
Sbjct: 118 -------ALPSGLCKLWIFGNQLTS------LPVLPPGLQELSVSDNQLA-SLPALPSEL 163

Query: 384 KNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSN 443
                L   + +++ ++P         L  L++S N L                      
Sbjct: 164 CK---LWAYNNQLT-SLPMLP----SGLQELSVSDNQLAS-------------------- 195

Query: 444 DFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQ 503
                +P +P  +  L   NN+ +   +    +       L VS N L+  LP       
Sbjct: 196 -----LPTLPSELYKLWAYNNRLTSLPALPSGLK-----ELIVSGNRLT-SLPVLP---S 241

Query: 504 ALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLA 563
            L  L ++ N  +          +P        L       N+ +  +P  +   L    
Sbjct: 242 ELKELMVSGNRLT---------SLPMLPSGLLSL---SVYRNQLT-RLPESLIH-LSSET 287

Query: 564 ILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP 601
            ++L  N       + L  ++        +     A  
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGA 325

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 43/232 (18%), Positives = 76/232 (32%), Gaps = 55/232 (23%)

Query: 397 SDAVPSWFWDLSPNLYYLNLSHNHLEG---------TVLDLSLNY-AGYPG-------ID 439
           +  V      L+     LN+  + L           T L +  N     P        ++
Sbjct: 28  AAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLE 87

Query: 440 LSSNDFEGPVPPVPGNVTSL---NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELP 496
           +S N     +P +P  +  L   +          S LC         L +  N L+  LP
Sbjct: 88  VSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCK--------LWIFGNQLT-SLP 137

Query: 497 DCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIG 556
                   L  L++++N  +          +P    +  +L    A +N+ + ++P    
Sbjct: 138 VLP---PGLQELSVSDNQLA---------SLPALPSELCKL---WAYNNQLT-SLPMLPS 181

Query: 557 DTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLT 608
                L  LS+  NQ   S+P     L K+   +  L S    +P   + L 
Sbjct: 182 ----GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTS----LPALPSGLK 224

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 31/191 (16%), Positives = 67/191 (35%), Gaps = 26/191 (13%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLA 144
           T  + L  L+  ++ L S+           + L  L +S   L++     L  + S L  
Sbjct: 198 TLPSELYKLWAYNNRLTSLP-------ALPSGLKELIVSGNRLTS-----LPVLPSELKE 245

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQL 204
           L ++ N+L   +P       + L  L++  NQ++ + +S  ++    T++L  N L+   
Sbjct: 246 LMVSGNRLTS-LPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS--- 297

Query: 205 PELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPS 264
                  +  +   +         +                 L     D   P +  +P+
Sbjct: 298 -----ERTLQALREITSAPGYSGPIIRFDMAGASAPRETRA-LHLAAADWLVPAREGEPA 351

Query: 265 PLVILNLDGNQ 275
           P    ++ G +
Sbjct: 352 PADRWHMFGQE 362

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (275), Expect = 2e-26
 Identities = 57/294 (19%), Positives = 99/294 (33%), Gaps = 38/294 (12%)

Query: 84  ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLL 143
              L+  +  Y A          S     +S +  +   +   L  +A           +
Sbjct: 29  HDVLSQWQRHYNADRNRWH----SAWRQANSNNPQIETRTGRALKATADLLEDATQPGRV 84

Query: 144 ALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLT-- 201
           AL+L S  L    PD     ++ LQH+ +    +  +  +     GL+TL L  N L   
Sbjct: 85  ALELRSVPLPQ-FPD-QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRAL 142

Query: 202 ----GQLPEL-FLNLSGCSK--------------------NSLEILKLGGNKLTGSLPD- 235
                 L  L  L++  C +                     +L+ L+L    +  SLP  
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPAS 201

Query: 236 ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDV 294
           I    +L+ L + ++ L  +          L  L+L G     + P        L RL +
Sbjct: 202 IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 295 SDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSL 348
            D     T+   + RL++LE LDL G      +    ++ L     +    +  
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.5 bits (215), Expect = 1e-18
 Identities = 40/210 (19%), Positives = 79/210 (37%), Gaps = 22/210 (10%)

Query: 84  ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSC--------GLSNSAYHWL 135
           +   A L  L LA + L ++  P+  S+ S   L  L + +C         L+++     
Sbjct: 123 MQQFAGLETLTLARNPLRAL--PA--SIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 136 FKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHL 195
            +   NL +L L    +   +P  + +N+  L+ L +  + +SA+  +  ++  L+ L L
Sbjct: 179 HQGLVNLQSLRLEWTGIRS-LPA-SIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236

Query: 196 FDNNLTGQLPELFLNLSGCSKNSLEILKL-GGNKLTGSLPD-ITEFSSLQELHLFDNKLD 253
                    P +F   +      L+ L L   + L  +LP  I   + L++L L      
Sbjct: 237 RGCTALRNYPPIFGGRA-----PLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNL 290

Query: 254 GSFPEKFRKPSPLVILNLDGNQLWGSLPDL 283
              P    +     I+ +  +         
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 81.5 bits (202), Expect = 5e-17
 Identities = 56/401 (13%), Positives = 111/401 (27%), Gaps = 90/401 (22%)

Query: 183 SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSL 242
              +  G + L+   +     L      LS       +           S       ++ 
Sbjct: 7   HHHHSSGRENLYFQGST---ALRPYHDVLS-----QWQRHYNADRNRWHSAWRQANSNNP 58

Query: 243 QELHLFDNKLDGSFPEKFRKPSP--LVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRL 299
           Q        L  +  +     +    V L L    L    PD       L  + +  + L
Sbjct: 59  QIETRTGRAL-KATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGL 116

Query: 300 NGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPP 359
              + + + + + LE L L  N L   +  S +++L++L+ +               LP 
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLRA-LPAS-IASLNRLRELSIRACP-----ELTELP- 167

Query: 360 FQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHN 419
              E +               Q   N   L +  T I  ++P+   +L  NL  L + ++
Sbjct: 168 ---EPLAST------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQ-NLKSLKIRNS 216

Query: 420 HLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGE 479
            L                           + P   ++  L                    
Sbjct: 217 PLSA-------------------------LGPAIHHLPKL-------------------- 231

Query: 480 YFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKI 539
               LD+         P        L  L L +     + L      +P  + +  +L+ 
Sbjct: 232 --EELDLRGCTALRNYPPIFGGRAPLKRLILKDC----SNLL----TLPLDIHRLTQLEK 281

Query: 540 IDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNL 580
           +D         +P+ I   LP   I+ +  +     + ++ 
Sbjct: 282 LDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQ-AQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 60/383 (15%), Positives = 101/383 (26%), Gaps = 84/383 (21%)

Query: 218 SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLW 277
             E L   G+       D    S  Q  +  D         +    +   I    G  L 
Sbjct: 13  GRENLYFQGSTALRPYHD--VLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRAL- 68

Query: 278 GSLPDL---SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSN 334
            +  DL   +  P    L++    L     +   RLS L+ + +    L  +     +  
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDT--MQQ 125

Query: 335 LSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDT 394
            + L+ +  + N L        LP     SI  L                    L I   
Sbjct: 126 FAGLETLTLARNPLRA------LP----ASIASL---------------NRLRELSIRAC 160

Query: 395 EISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPG 454
                +P        +  +  L                                      
Sbjct: 161 PELTELPEPLASTDASGEHQGLV------------------------------------- 183

Query: 455 NVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNN 514
           N+ SL L         +S+ ++       L + ++ LS  L   +     L  L+L    
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQN--LKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT 240

Query: 515 FSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHG 574
                L       PP       LK +   D     T+P  I   L +L  L LR      
Sbjct: 241 A----LR----NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLS 291

Query: 575 SIPRNLCRLSKIQLLDFSLNSIS 597
            +P  + +L    ++    +  +
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 52/384 (13%), Positives = 112/384 (29%), Gaps = 85/384 (22%)

Query: 229 LTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPF 288
           +  S       S  + L+   +     + +   +       + +         + +    
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN---- 56

Query: 289 LTRLDVSDSRLNGTVSEGLGRLS--KLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFN 346
             +++    R     ++ L   +      L+L    L     +     LS L++M     
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ-AFRLSHLQHMTIDAA 114

Query: 347 SLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWD 406
            L        LP    +++                       L ++   +  A+P+    
Sbjct: 115 GLME------LP----DTMQQF---------------AGLETLTLARNPLR-ALPASIAS 148

Query: 407 LSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKF 466
           L+  L  L++                       L+       +P          L++   
Sbjct: 149 LN-RLRELSIRACPE------------------LTE------LPE--------PLASTDA 175

Query: 467 SGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGE 526
           SG    L ++       L +    +   LP  +   Q L  L + N+  S          
Sbjct: 176 SGEHQGLVNLQ-----SLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS---------A 220

Query: 527 IPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRS-NQFHGSIPRNLCRLSK 585
           + P++    +L+ +D          P   G     L  L L+  +    ++P ++ RL++
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLL-TLPLDIHRLTQ 278

Query: 586 IQLLDFSLNSISGAIPKCINNLTA 609
           ++ LD         +P  I  L A
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPA 302

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  107 bits (269), Expect = 7e-26
 Identities = 65/265 (24%), Positives = 111/265 (41%), Gaps = 23/265 (8%)

Query: 97  SSTLLSINRPSLSSM--NSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLA- 153
           S T +  N   L+S+     +S T L+L S  L  S  H +F   + L  L L+SN L+ 
Sbjct: 8   SGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 154 GPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPE--LFLNL 211
                 +    T+L++L+LS N +  +S +F  +  L+ L    +NL  Q+ E  +FL+L
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSL 125

Query: 212 SGCSKNSLEILKLGGNKLTGSLPDIT--EFSSLQELHLFDNKLDGSFPEK-FRKPSPLVI 268
                 +L  L +          +      SSL+ L +  N    +F    F +   L  
Sbjct: 126 R-----NLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 269 LNLDGNQLWGSLPDLSVF---PFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
           L+L   QL   L   + F     L  L++S +      +     L+ L+ LD   N +  
Sbjct: 180 LDLSQCQLE-QLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM- 236

Query: 326 MITESHVSNL-SKLKYMDFSFNSLA 349
              +  + +  S L +++ + N  A
Sbjct: 237 TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.5 bits (233), Expect = 4e-21
 Identities = 50/217 (23%), Positives = 87/217 (40%), Gaps = 20/217 (9%)

Query: 65  LSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSS 124
           LS N     ++    C  +     SL+ L L+ + +++++    S+      L  LD   
Sbjct: 59  LSSNG----LSFKGCCSQSDFGTTSLKYLDLSFNGVITMS----SNFLGLEQLEHLDFQH 110

Query: 125 CGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQI--SAISK 182
             L   +   +F    NL+ LD++         +  F+ +++L+ L ++ N    + +  
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPD 169

Query: 183 SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFS 240
            F  +  L  L L    L    P  F +LS     SL++L +  N    SL        +
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLS-----SLQVLNMSHNNFF-SLDTFPYKCLN 223

Query: 241 SLQELHLFDNKLDGSFPEKFRK-PSPLVILNLDGNQL 276
           SLQ L    N +  S  ++ +  PS L  LNL  N  
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 89.3 bits (222), Expect = 9e-20
 Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 15/188 (7%)

Query: 69  SQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLS 128
           S N +IT+ +        L  L  L    S L  +     S   S  +L  LD+S     
Sbjct: 86  SFNGVITMSSN----FLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTR 139

Query: 129 NSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNM 187
            +     F   S+L  L +  N          F+ +  L  L+LS  Q+  +S  +F ++
Sbjct: 140 VAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198

Query: 188 CGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITE--FSSLQEL 245
             L+ L++  NN        +  L+     SL++L    N +  S     +   SSL  L
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLN-----SLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 246 HLFDNKLD 253
           +L  N   
Sbjct: 254 NLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 67/315 (21%), Positives = 112/315 (35%), Gaps = 75/315 (23%)

Query: 269 LNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM-I 327
           +  +   L  S+P   +    TRL++  ++L         +L++L  L L  N L     
Sbjct: 12  IRCNSKGL-TSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69

Query: 328 TESHVSNLSKLKYMDFSFNSL-ALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNY 386
                   + LKY+D SFN +  ++ +F  L   QLE +   H  L              
Sbjct: 70  CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE--QLEHLDFQHSNL-------------- 113

Query: 387 YFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFE 446
                   ++S+   S F  L  NL YL++SH H                     +  F 
Sbjct: 114 -------KQMSE--FSVFLSL-RNLIYLDISHTHTR----------------VAFNGIFN 147

Query: 447 GPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLSGELPDCLL 500
           G       ++  L ++ N F        +   + F+      +LD+S   L  +L     
Sbjct: 148 GLS-----SLEVLKMAGNSF------QENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAF 195

Query: 501 R-WQALAVLNLANNNFSGNFLTFFVGEIPPS-LKKCNELKIIDAGDNKFSGTIPAWIGDT 558
               +L VLN+++NNF           +     K  N L+++D   N    +    +   
Sbjct: 196 NSLSSLQVLNMSHNNFF---------SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246

Query: 559 LPKLAILSLRSNQFH 573
              LA L+L  N F 
Sbjct: 247 PSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 51/245 (20%), Positives = 84/245 (34%), Gaps = 53/245 (21%)

Query: 374 PHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG---------- 423
              P           L++   ++       F  L   L  L+LS N L            
Sbjct: 24  TGIPSSATR------LELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFG 76

Query: 424 ----TVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGE 479
                 LDLS N     G+   S++F G        +  L+  ++     +  +      
Sbjct: 77  TTSLKYLDLSFN-----GVITMSSNFLGL-----EQLEHLDFQHSN----LKQM--SEFS 120

Query: 480 YFS------YLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKK 533
            F       YLD+S                +L VL +A N+F  NFL       P    +
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-------PDIFTE 173

Query: 534 CNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCR-LSKIQLLDFS 592
              L  +D    +    +     ++L  L +L++  N F  S+     + L+ +Q+LD+S
Sbjct: 174 LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYS 231

Query: 593 LNSIS 597
           LN I 
Sbjct: 232 LNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 36/203 (17%), Positives = 62/203 (30%), Gaps = 39/203 (19%)

Query: 399 AVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTS 458
           +VP+    +  +   L L  N L+                 L    F+         +T 
Sbjct: 21  SVPT---GIPSSATRLELESNKLQ----------------SLPHGVFDKL-----TQLTK 56

Query: 459 LNLSNNKFS-GPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSG 517
           L+LS+N  S     S          YLD+S N +   +    L  + L  L+  ++N   
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK- 114

Query: 518 NFLTFFVGEIPPS--LKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS 575
                   ++           L  +D             I + L  L +L +  N F  +
Sbjct: 115 --------QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQEN 165

Query: 576 IPRN-LCRLSKIQLLDFSLNSIS 597
              +    L  +  LD S   + 
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 26/173 (15%)

Query: 438 IDLSSNDFEGPVPP-VPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVSDNL 490
           I  +S      VP  +P + T L L +NK         S+    F        L +S N 
Sbjct: 12  IRCNSKGLTS-VPTGIPSSATRLELESNKLQ-------SLPHGVFDKLTQLTKLSLSSNG 63

Query: 491 LS--GELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFS 548
           LS  G          +L  L+L+ N             +  +     +L+ +D   +   
Sbjct: 64  LSFKGCCSQSDFGTTSLKYLDLSFNGVI---------TMSSNFLGLEQLEHLDFQHSNLK 114

Query: 549 GTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP 601
                 +  +L  L  L +       +       LS +++L  + NS      
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  106 bits (266), Expect = 2e-24
 Identities = 85/477 (17%), Positives = 149/477 (31%), Gaps = 57/477 (11%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF 196
           +S     L+++ N ++  +      +++ L+ L +S N+I  +    F     L+ L L 
Sbjct: 19  LSQKTTILNISQNYISE-LWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFS---SLQELHLFDNKLD 253
            N L          +S     +L+ L L  N    +LP   EF     L+ L L    L+
Sbjct: 78  HNKLV--------KISCHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 254 GSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKL 313
            S        +   +L L   + +G   D           +            +  +S  
Sbjct: 129 KSSVLPIAHLNISKVL-LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

Query: 314 EFLDL-FGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKL 372
              +L   N    +        LS L  +  +     L  +           I  L    
Sbjct: 188 TVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL---- 243

Query: 373 GPHFPKWLQSQKNYYFLDISD-TEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLN 431
                         ++  IS+           F     +L  L++     +      S  
Sbjct: 244 --------VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295

Query: 432 YAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLL 491
           Y        S+            N+ +  +S  +    +  LC      F +LD S+NLL
Sbjct: 296 YEI-----FSNM-----------NIKNFTVSGTRM---VHMLCPSKISPFLHLDFSNNLL 336

Query: 492 SGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTI 551
           +  + +       L  L L  N          + +I     +   L+ +D   N  S   
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKE------LSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 552 PAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLT 608
                     L  L++ SN    +I R L    +I++LD   N I  +IPK +  L 
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLE 444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.8 bits (228), Expect = 1e-19
 Identities = 77/496 (15%), Positives = 147/496 (29%), Gaps = 61/496 (12%)

Query: 84  ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLL 143
           I SL+ LR L ++ + +  ++            L  LDLS   L   + H       NL 
Sbjct: 41  ILSLSKLRILIISHNRIQYLDISVFKFN---QELEYLDLSHNKLVKISCHPT----VNLK 93

Query: 144 ALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQ 203
            LDL+ N          F NM+ L+ L LS   +     S   +  L    +        
Sbjct: 94  HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE--KSSVLPIAHLNISKVLLVLGETY 151

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKP 263
             +            L+        L    P   EF  + ++       +          
Sbjct: 152 GEKE-------DPEGLQDFNT--ESLHIVFPTNKEFHFILDVS-VKTVANLELSNIKCVL 201

Query: 264 SPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL 323
                                    L  ++ + +     +   L   + + +  +    L
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ--LVWHTTVWYFSISNVKL 259

Query: 324 EGMITESHVS----NLSKLKYMDFSFNSLALNFS--FGWLPPFQLESIGLLHCKLGPHFP 377
           +G +          +L  L       +      S  +       +++  +   ++     
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 378 KWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPG 437
                   +  LD S+  ++D V      L   L  L L  N L+               
Sbjct: 320 --PSKISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQLK--------------E 362

Query: 438 IDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD 497
           +   +            ++  L++S N  S           +    L++S N+L+  +  
Sbjct: 363 LSKIAEMTTQMK-----SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417

Query: 498 CLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD 557
           CL     + VL+L +N             IP  + K   L+ ++   N+   ++P  I D
Sbjct: 418 CLPP--RIKVLDLHSNKIK---------SIPKQVVKLEALQELNVASNQLK-SVPDGIFD 465

Query: 558 TLPKLAILSLRSNQFH 573
            L  L  + L +N + 
Sbjct: 466 RLTSLQKIWLHTNPWD 481

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  105 bits (264), Expect = 4e-24
 Identities = 96/495 (19%), Positives = 173/495 (34%), Gaps = 54/495 (10%)

Query: 115 TSLTLLDLSS---CGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLN 171
                L LS      L      +L    S L  L L+ N++   +  + F     L++L+
Sbjct: 52  PRTKALSLSQNSISELRMPDISFL----SELRVLRLSHNRIRS-LDFHVFLFNQDLEYLD 106

Query: 172 LSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPE--LFLNLSGCSKNSLEILKLGGNKL 229
           +S N++  I  S   M  L+ L L  N+    LP    F NL+      L  L L   K 
Sbjct: 107 VSHNRLQNI--SCCPMASLRHLDLSFNDFD-VLPVCKEFGNLT-----KLTFLGLSAAKF 158

Query: 230 TGSLPDITEFSSLQELHLFDNKLD-GSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPF 288
              L        +  LHL    LD  S+  K  +   L I N     L      L     
Sbjct: 159 R-QLD----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV 213

Query: 289 LTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSL 348
              ++         +          E        L  +     + N++ L++++ ++   
Sbjct: 214 NMSVNALGHLQLSNIK------LNDENCQRLMTFLSELTRGPTLLNVT-LQHIETTWKCS 266

Query: 349 ALNFSFGWLPP---FQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFW 405
              F F W  P     + ++ +        F     + K+     + +     +  + + 
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

Query: 406 DLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL---NLS 462
             +  +    LS +      +    + + +  ++ + N F   V      +  L    L 
Sbjct: 327 VFA-EMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385

Query: 463 NNKF-SGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQA-LAVLNLANNNFSGNFL 520
            N   +    +L + +      LDVS N L+    D    W   + VLNL++N  +G+  
Sbjct: 386 RNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445

Query: 521 TFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRN- 579
                 +PP       +K++D  +N+   +IP  +   L  L  L++ SNQ   S+P   
Sbjct: 446 R----CLPPK------VKVLDLHNNRIM-SIPKDV-THLQALQELNVASNQLK-SVPDGV 492

Query: 580 LCRLSKIQLLDFSLN 594
             RL+ +Q +    N
Sbjct: 493 FDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 96.1 bits (239), Expect = 5e-21
 Identities = 78/498 (15%), Positives = 159/498 (31%), Gaps = 71/498 (14%)

Query: 86  SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLAL 145
            L+ LR L L+ + + S++            L  LD+S   L N +   +    ++L  L
Sbjct: 74  FLSELRVLRLSHNRIRSLDFHVFLFN---QDLEYLDVSHNRLQNISCCPM----ASLRHL 126

Query: 146 DLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLP 205
           DL+ N          F N+T L  L LS  +          +  L    +  + ++  + 
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR--QLDLLPVAHLHLSCILLDLVSYHIK 184

Query: 206 ELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSP 265
                       ++  L    N L     +++  ++L  L L + KL+    ++      
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMS-VNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 266 LVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
            +        +            L  ++ +                 +E+L+++  ++  
Sbjct: 244 ELTRGPTLLNV-----------TLQHIETTWKCSVKLFQ--FFWPRPVEYLNIYNLTITE 290

Query: 326 MITESHVSN----LSKLKYMDFSFNSLALNFS--FGWLPPFQLESIGLLHCKLGPHFPKW 379
            I     +     L  L            +    +       ++ + +            
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-- 348

Query: 380 LQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGID 439
             S  ++ FL+ +    +D+V      L   L  L L  N L+      +          
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTL-KRLQTLILQRNGLK------NFF-------- 393

Query: 440 LSSNDFEGPVPPVPGNVTSLNLSNNKF----SGPISSLCSISGEYFSYLDVSDNLLSGEL 495
                    V  +  N++SL   +       S      C+ +      L++S N+L+G +
Sbjct: 394 --------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI-LVLNLSSNMLTGSV 444

Query: 496 PDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWI 555
             CL     + VL+L NN             IP  +     L+ ++   N+   ++P  +
Sbjct: 445 FRCLP--PKVKVLDLHNNRIM---------SIPKDVTHLQALQELNVASNQLK-SVPDGV 492

Query: 556 GDTLPKLAILSLRSNQFH 573
            D L  L  + L  N + 
Sbjct: 493 FDRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.2 bits (221), Expect = 9e-19
 Identities = 45/280 (16%), Positives = 98/280 (35%), Gaps = 20/280 (7%)

Query: 77  FNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLF 136
             T +  +T   +L ++ L            L        +  L++ +  ++       F
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 137 KISSNLLA----LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLK 191
             S   L       + +        +  +S    +    LS++    I      +     
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFS-KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356

Query: 192 TLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITE-FSSLQELHLFDN 250
            L+   N  T  + +    L       L+ L L  N L  +   +     ++  L   D 
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLK-----RLQTLILQRNGLK-NFFKVALMTKNMSSLETLDV 410

Query: 251 KLD----GSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEG 306
            L+     ++         +++LNL  N L GS+    + P +  LD+ ++R+  ++ + 
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-CLPPKVKVLDLHNNRIM-SIPKD 468

Query: 307 LGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFN 346
           +  L  L+ L++  N L+  + +     L+ L+Y+    N
Sbjct: 469 VTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.3 bits (198), Expect = 5e-16
 Identities = 45/258 (17%), Positives = 86/258 (33%), Gaps = 24/258 (9%)

Query: 52  SPINSFILKLMMALSKNSQNAIITVFNTCIVTIT----SLASLRDLYLASSTLLSINRPS 107
             + +  L+ +    K S       +   +  +     ++    D    + +  ++    
Sbjct: 249 PTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLM 308

Query: 108 LSSMNSSTSLTLLDLSSCGLSNSAYHWL------------FKISSNLLALDLNSNQLAGP 155
           +  + +   L   +      +      L                S+   L+   N     
Sbjct: 309 IEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD- 367

Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCS 215
                 S +  LQ L L  N +    K       + +L   D +L       +      +
Sbjct: 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427

Query: 216 KNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGN 274
           ++ + +L L  N LTGS+   +     ++ L L +N++  S P+       L  LN+  N
Sbjct: 428 ES-ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483

Query: 275 QLWGSLPDLSVFPFLTRL 292
           QL  S+PD  VF  LT L
Sbjct: 484 QL-KSVPD-GVFDRLTSL 499

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.0 bits (192), Expect = 3e-15
 Identities = 63/414 (15%), Positives = 123/414 (29%), Gaps = 48/414 (11%)

Query: 210 NLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVIL 269
           +++  S     ++      LT    D+      + L L  N +           S L +L
Sbjct: 24  SMTPFSNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVL 81

Query: 270 NLDGNQLWGSLPDLSVF---PFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
            L  N++  SL    VF     L  LDVS +RL    +     ++ L  LDL  N  + +
Sbjct: 82  RLSHNRIR-SLDF-HVFLFNQDLEYLDVSHNRL---QNISCCPMASLRHLDLSFNDFDVL 136

Query: 327 ITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNY 386
                  NL+KL ++  S                +   +                   + 
Sbjct: 137 PVCKEFGNLTKLTFLGLSAA--------------KFRQL---------DLLPVAHLHLSC 173

Query: 387 YFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPG---IDLSSN 443
             LD+    I           +  + +L    N L    +++S+N  G+     I L+  
Sbjct: 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233

Query: 444 DFEGPVPPVPGNVTSLNLSNNKFS-------GPISSLCSISGEYFSYLDVSDNLLSGELP 496
           + +  +  +        L N             +            YL++ +  ++  + 
Sbjct: 234 NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293

Query: 497 DCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIG 556
                +   A+ +L   +       F    +     + N   +  +     +  I     
Sbjct: 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD----TPFIHMVCP 349

Query: 557 DTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAM 610
            +      L+   N F  S+ +    L ++Q L    N +     K       M
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNM 402

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 63.7 bits (155), Expect = 8e-11
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 9/157 (5%)

Query: 84  ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLL 143
            ++L  L+ L L  + L +  + +L + N  +SL  LD+S   L++ AY      + ++L
Sbjct: 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 144 ALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQ 203
            L+L+SN L G +          ++ L+L  N+I +I K   ++  L+ L++  N L   
Sbjct: 432 VLNLSSNMLTGSVFRCLPPK---VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFS 240
              +F  L+     SL+ + L  N    + P I   S
Sbjct: 489 PDGVFDRLT-----SLQYIWLHDNPWDCTCPGIRYLS 520

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  104 bits (260), Expect = 8e-24
 Identities = 77/451 (17%), Positives = 144/451 (31%), Gaps = 85/451 (18%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI--SKSFGNMCGLKTLHL 195
           + +++  +DL+ N +A  + + +FS +  LQ L +       +  + +F  +  L  L L
Sbjct: 28  LPAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 196 FDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEF---SSLQELHLFDNKL 252
             N         F  L+     +LE+L L    L G++     F   +SL+ L L DN +
Sbjct: 87  DYNQFLQLETGAFNGLA-----NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 253 DGSFPEK-FRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLS 311
               P   F       +L+L  N+   S+ +            +  RL+   S  L  ++
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNK-VKSICE-EDLLNFQGKHFTLLRLS---SITLQDMN 196

Query: 312 KLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCK 371
           +         +             + +  +D S N    + +  +        I  L   
Sbjct: 197 EYWLGWEKCGNPFK---------NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247

Query: 372 LGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLS-PNLYYLNLSHNHLEGTVLDLSL 430
              +                  T   D     F  L    +   +LS + +         
Sbjct: 248 NSYNMGSSF-----------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-------- 288

Query: 431 NYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YL 484
                    L  + F         ++  L L+ N+ +        I    F        L
Sbjct: 289 --------ALLKSVFSHFT-----DLEQLTLAQNEIN-------KIDDNAFWGLTHLLKL 328

Query: 485 DVSDNLLSGELPDCLLRW-QALAVLNLANNNFSGNFLTFFVGEIPP-SLKKCNELKIIDA 542
           ++S N L   +   +      L VL+L+ N+            +   S      LK +  
Sbjct: 329 NLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR---------ALGDQSFLGLPNLKELAL 378

Query: 543 GDNKFSGTIPAWIGDTLPKLAILSLRSNQFH 573
             N+   ++P  I D L  L  + L +N + 
Sbjct: 379 DTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  101 bits (254), Expect = 4e-23
 Identities = 81/449 (18%), Positives = 141/449 (31%), Gaps = 92/449 (20%)

Query: 88  ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDL 147
           A +  + L+ +++  +N  S S +     L  L +          +  F+  S+L+ L L
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRL---QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86

Query: 148 NSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI---SKSFGNMCGLKTLHLFDNNLTGQL 204
           + NQ    +   AF+ +  L+ L L+   +         F  +  L+ L L DNN+    
Sbjct: 87  DYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 205 PE-LFLNLSGCSKNSLEILKLGGNKLTGSLPDI---TEFSSLQELHLFDNKL-------- 252
           P   FLN+         +L L  NK+     +     +      L L    L        
Sbjct: 146 PASFFLNMR-----RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 253 DGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSK 312
                    K + +  L+L GN  +        F  +    +    L+ + + G      
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSS-FGH 258

Query: 313 LEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKL 372
             F D    + +G+         S +K  D S + +                       L
Sbjct: 259 TNFKDPDNFTFKGL-------EASGVKTCDLSKSKIF---------------------AL 290

Query: 373 GPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNY 432
                      +    L ++  EI+    + FW L+ +L  LNLS N L           
Sbjct: 291 LKSVFSHFTDLEQ---LTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLG---------- 336

Query: 433 AGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDV 486
                  + S  FE         +  L+LS N          ++  + F        L +
Sbjct: 337 ------SIDSRMFENLD-----KLEVLDLSYNHIR-------ALGDQSFLGLPNLKELAL 378

Query: 487 SDNLLSGELPDCLLRWQALAVLNLANNNF 515
             N L         R  +L  + L  N +
Sbjct: 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.9 bits (244), Expect = 7e-22
 Identities = 62/315 (19%), Positives = 109/315 (34%), Gaps = 60/315 (19%)

Query: 86  SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHW-LFKISSNLLA 144
            L+SL  L L  +  L +   + + +    +L +L L+ C L  +      FK  ++L  
Sbjct: 77  GLSSLIILKLDYNQFLQLETGAFNGL---ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK---------------------- 182
           L L  N +    P   F NM     L+L+ N++ +I +                      
Sbjct: 134 LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ 193

Query: 183 -------------SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSK--------NSLEI 221
                        +      + TL L  N     + + F +    +K        +    
Sbjct: 194 DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 222 LKLGGNKLTGSLPDIT----EFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLW 277
              G         + T    E S ++   L  +K+       F   + L  L L  N++ 
Sbjct: 254 SSFGHTNFK-DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI- 311

Query: 278 GSLPDLSVF---PFLTRLDVSDSRLNGTVSEGL-GRLSKLEFLDLFGNSLEGMITESHVS 333
             + D + F     L +L++S + L G++   +   L KLE LDL  N +   + +    
Sbjct: 312 NKIDD-NAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFL 368

Query: 334 NLSKLKYMDFSFNSL 348
            L  LK +    N L
Sbjct: 369 GLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 65/359 (18%), Positives = 116/359 (32%), Gaps = 53/359 (14%)

Query: 279 SLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKL 338
            +P+L     +  +D+S + +         RL  L+FL +   +   +I  +    LS L
Sbjct: 24  QVPELP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 339 KYMDFSFNSLALNFSFGWLPP------FQLESIGLLHCKLGPHF--PKWLQSQKNYYFLD 390
             +   +N          L          LE + L  C L        + +   +   L 
Sbjct: 82  IILKLDYNQFLQ------LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135

Query: 391 ISDTEISDAVPSWFWDLSPNLYYLNLSHNHL--------------EGTVLDLSLNYAGYP 436
           + D  I    P+ F+      + L+L+ N +                T+L LS       
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL--- 192

Query: 437 GIDLSSNDFEGPVPPVP---GNVTSLNLSNNKF----SGPISSLCSISGEYFSYLDVSDN 489
             D++           P    ++T+L+LS N F    +       + +      L  S N
Sbjct: 193 -QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 490 LLSGELPDCLLRWQALAVLNLANNN-----FSGNFLTFFVGEIPPSLKKCNELKIIDAGD 544
           + S                 L  +       S + +   +  +         L+ +    
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD---LEQLTLAQ 308

Query: 545 NKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCR-LSKIQLLDFSLNSISGAIPK 602
           N+ +  I       L  L  L+L  N   GSI   +   L K+++LD S N I  A+  
Sbjct: 309 NEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGD 364

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  100 bits (251), Expect = 1e-23
 Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 22/220 (10%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF 196
           +  +   LDL+ N L   +  Y+F +   LQ L+LS  +I  I   ++ ++  L TL L 
Sbjct: 26  LPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDG 254
            N +       F  LS     SL+ L      L  SL +  I    +L+EL++  N +  
Sbjct: 85  GNPIQSLALGAFSGLS-----SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ- 137

Query: 255 SFPEK--FRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLN------GTVSEG 306
           SF     F   + L  L+L  N++  S+   +    L ++ + +  L+        +  G
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC-TDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 307 LGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFN 346
             +  +L+ L L  N L+  + +     L+ L+ +    N
Sbjct: 196 AFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 87.3 bits (217), Expect = 3e-19
 Identities = 65/246 (26%), Positives = 101/246 (41%), Gaps = 51/246 (20%)

Query: 88  ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSN---SAYHWLFKISSNLLA 144
            S ++L L+ + L  +   S  S      L +LDLS C +      AY  L    S+L  
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSF---PELQVLDLSRCEIQTIEDGAYQSL----SHLST 80

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTG- 202
           L L  N +   +   AFS +++LQ L      ++++ +   G++  LK L++  N +   
Sbjct: 81  LILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 203 QLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQ-------ELHLFDNKLDGS 255
           +LPE F NL+     +LE L L  NK+  S+        L         L L  N ++  
Sbjct: 140 KLPEYFSNLT-----NLEHLDLSSNKIQ-SIYCTD-LRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 256 FPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEF 315
            P  F++   L  L LD NQL  S+PD                          RL+ L+ 
Sbjct: 193 QPGAFKEIR-LKELALDTNQL-KSVPD----------------------GIFDRLTSLQK 228

Query: 316 LDLFGN 321
           + L  N
Sbjct: 229 IWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 18/172 (10%)

Query: 86  SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLAL 145
           SL+ L  L L  + + S+   + S +   +SL  L      L+ S  ++       L  L
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGL---SSLQKLVAVETNLA-SLENFPIGHLKTLKEL 129

Query: 146 DLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLK----TLHLFDNNL 200
           ++  N +        FSN+T L+HL+LS N+I +I       +  +     +L L  N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 201 TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDN 250
               P  F  +       L+ L L  N+L  S+PD      +SLQ++ L  N
Sbjct: 190 NFIQPGAFKEI------RLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 8/121 (6%)

Query: 82  VTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSN---SAYHWLFKI 138
             I  L +L++L +A + + S   P   S  + T+L  LDLSS  + +   +    L ++
Sbjct: 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFS--NLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFD 197
               L+LDL+ N +   I   AF  +  L+ L L  NQ+ ++    F  +  L+ + L  
Sbjct: 176 PLLNLSLDLSLNPMNF-IQPGAFKEIR-LKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

Query: 198 N 198
           N
Sbjct: 234 N 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 98.1 bits (245), Expect = 6e-23
 Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 16/214 (7%)

Query: 88  ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDL 147
           A+ + ++L  + +  +   S  +     +LT+L L S  L+       F   + L  LDL
Sbjct: 32  AASQRIFLHGNRISHVPAASFRAC---RNLTILWLHSNVLARIDAAA-FTGLALLEQLDL 87

Query: 148 NSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPE 206
           + N     +    F  +  L  L+L    +  +    F  +  L+ L+L DN L     +
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147

Query: 207 LFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFRKPS 264
            F +L      +L  L L GN+++ S+P+       SL  L L  N++    P  FR   
Sbjct: 148 TFRDLG-----NLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 265 PLVILNLDGNQLWGSLPD--LSVFPFLTRLDVSD 296
            L+ L L  N L  +LP   L+    L  L ++D
Sbjct: 202 RLMTLYLFANNL-SALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 95.4 bits (238), Expect = 6e-22
 Identities = 57/259 (22%), Positives = 92/259 (35%), Gaps = 44/259 (16%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLF 196
           I +    + L+ N+++  +P  +F     L  L L  N ++ I   +F  +  L+ L L 
Sbjct: 30  IPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 197 DNNLTGQLP-ELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLD 253
           DN     +    F  L       L  L L    L   L        ++LQ L+L DN L 
Sbjct: 89  DNAQLRSVDPATFHGLG-----RLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142

Query: 254 GSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKL 313
               + FR    L  L L GN++  S+P+ +                         L  L
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRIS-SVPERA----------------------FRGLHSL 179

Query: 314 EFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPF-QLESIGLLH--- 369
           + L L  N +   +      +L +L  +    N+L+       L P   L+ + L     
Sbjct: 180 DRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

Query: 370 ---CKLGPHFPKWLQSQKN 385
              C+  P    WLQ  + 
Sbjct: 238 VCDCRARP-LWAWLQKFRG 255

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 11/146 (7%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
           T   L  L  L+L    L  +       +    +L  L L    L        F+   NL
Sbjct: 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGL---AALQYLYLQDNALQALPDDT-FRDLGNL 155

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLT 201
             L L+ N+++  +P+ AF  + +L  L L  N+++ +   +F ++  L TL+LF NNL+
Sbjct: 156 THLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 202 GQLPELFLNLSGCSKNSLEILKLGGN 227
               E    L      +L+ L+L  N
Sbjct: 215 ALPTEALAPLR-----ALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 47/261 (18%), Positives = 80/261 (30%), Gaps = 62/261 (23%)

Query: 263 PSPLVILNLDGNQLWGSLPD--LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFG 320
           P+    + L GN++   +P         LT L +  + L    +     L+ LE LDL  
Sbjct: 31  PAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 321 NSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWL 380
           N+    +  +    L +L  +                    L+ +G          P   
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRC--------------GLQELG----------PGLF 125

Query: 381 QSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDL 440
           +      +L + D  +       F DL  NL +L L  N +                  +
Sbjct: 126 RGLAALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRIS----------------SV 168

Query: 441 SSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLSGE 494
               F G       ++  L L  N+ +        +    F        L +  N LS  
Sbjct: 169 PERAFRGL-----HSLDRLLLHQNRVA-------HVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 495 LPDCLLRWQALAVLNLANNNF 515
             + L   +AL  L L +N +
Sbjct: 217 PTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 49/302 (16%), Positives = 86/302 (28%), Gaps = 95/302 (31%)

Query: 279 SLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKL 338
           ++P   +     R+ +  +R++   +        L  L L  N L   I  +  + L+ L
Sbjct: 25  AVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALL 82

Query: 339 KYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISD 398
           + +D S N+             QL S+                                 
Sbjct: 83  EQLDLSDNA-------------QLRSVD-------------------------------- 97

Query: 399 AVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTS 458
             P+ F  L   L+ L+L    L+                +L    F G        +  
Sbjct: 98  --PATFHGL-GRLHTLHLDRCGLQ----------------ELGPGLFRGLA-----ALQY 133

Query: 459 LNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLSGELPDCLLRWQALAVLNLAN 512
           L L +N        L ++  + F       +L +  N +S           +L  L L  
Sbjct: 134 LYLQDNA-------LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 513 NNFSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQ 571
           N  +          + P + +    L  +    N  S  +P      L  L  L L  N 
Sbjct: 187 NRVA---------HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNP 236

Query: 572 FH 573
           + 
Sbjct: 237 WV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 39/221 (17%), Positives = 62/221 (28%), Gaps = 51/221 (23%)

Query: 398 DAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVT 457
            AVP     +      + L  N +                  + +  F         N+T
Sbjct: 24  QAVPV---GIPAASQRIFLHGNRIS----------------HVPAASFRAC-----RNLT 59

Query: 458 SLNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLSGELPDCLLRW-QALAVLNL 510
            L L +N  +        I    F+       LD+SDN     +          L  L+L
Sbjct: 60  ILWLHSNVLA-------RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112

Query: 511 ANNNFSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRS 569
                          E+ P   +    L+ +   DN     +P      L  L  L L  
Sbjct: 113 DRCGLQ---------ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHG 162

Query: 570 NQFHGSIPRN-LCRLSKIQLLDFSLNSISGAIPKCINNLTA 609
           N+   S+P      L  +  L    N ++   P    +L  
Sbjct: 163 NRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 95.6 bits (238), Expect = 1e-21
 Identities = 63/286 (22%), Positives = 120/286 (41%), Gaps = 28/286 (9%)

Query: 80  CIVTITSLASLRDLYLASSTLLSINRPSLSSM--NSSTSLTLLDLSSCGLSNSAYHWLFK 137
             ++    ++   L    + +   +  SL+S+    + ++  LDLS+  ++    +   +
Sbjct: 15  ISLSKEESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRIT-YISNSDLQ 73

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLF 196
              NL AL L SN +   I + +FS++ +L+HL+LS N +S +S S F  +  L  L+L 
Sbjct: 74  RCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132

Query: 197 DNNLTGQLPE--LFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKL 252
            N     L E  LF +L       L+IL++G       +        + L+EL +  + L
Sbjct: 133 GNPYK-TLGETSLFSHL-----TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 253 DGSFPEKFRKPSPLVILNLDGNQLWGSLPD--LSVFPFLTRLDVSDSRLNGT-------- 302
               P+  +    +  L L   Q    L +  + V   +  L++ D+ L+          
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 303 VSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSL 348
            +  L +      + +   SL        ++ +S L  ++FS N L
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 89.8 bits (223), Expect = 1e-19
 Identities = 45/223 (20%), Positives = 79/223 (35%), Gaps = 22/223 (9%)

Query: 86  SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLAL 145
           SL SL  L L+ + L +++      +   +SLT L+L            LF   + L  L
Sbjct: 98  SLGSLEHLDLSYNYLSNLSSSWFKPL---SSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 146 DLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQL 204
            + +      I    F+ +T L+ L +  + + +    S  ++  +  L L        L
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 205 PELFLNLSGCSKNSLEILKLGGNKLTG----SLPDITEFS-----SLQELHLFDNKLDGS 255
                  S     S+E L+L    L       L      S     + + + + D  L   
Sbjct: 215 EIFVDVTS-----SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQ 268

Query: 256 FPEKFRKPSPLVILNLDGNQLWGSLPD--LSVFPFLTRLDVSD 296
             +   + S L+ L    NQL  S+PD        L ++ +  
Sbjct: 269 VMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 65/378 (17%), Positives = 117/378 (30%), Gaps = 114/378 (30%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFD 197
           ++  + +LDL++N++   I +        LQ L L+ N I+ I                 
Sbjct: 50  LTEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIE---------------- 92

Query: 198 NNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFP 257
                   + F +L      SLE L L  N L+ +L                        
Sbjct: 93  -------EDSFSSLG-----SLEHLDLSYNYLS-NLS----------------------S 117

Query: 258 EKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLD 317
             F+  S L  LNL GN    +L + S+F                       L+KL+ L 
Sbjct: 118 SWFKPLSSLTFLNLLGNPY-KTLGETSLF---------------------SHLTKLQILR 155

Query: 318 LFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFP 377
           +        I     + L+ L+ ++   + L          P  L+SI  +         
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ------SYEPKSLKSIQNVS-------- 201

Query: 378 KWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPG 437
                      L +   +    +   F D++ ++  L L    L+               
Sbjct: 202 ----------HLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTF-----------HF 239

Query: 438 IDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD 497
            +LS+ +    +        ++ +++      +  L  ISG     L+ S N L      
Sbjct: 240 SELSTGETNSLIKKF--TFRNVKITDESLFQVMKLLNQISG--LLELEFSRNQLKSVPDG 295

Query: 498 CLLRWQALAVLNLANNNF 515
              R  +L  + L  N +
Sbjct: 296 IFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 45/261 (17%), Positives = 83/261 (31%), Gaps = 51/261 (19%)

Query: 389 LDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG------------TVLDLSLNYAGYP 436
           LD+S+  I+    S       NL  L L+ N +                LDLS NY    
Sbjct: 57  LDLSNNRITYISNSDLQRC-VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-- 113

Query: 437 GIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISG----EYFSYLDVSDNLLS 492
             +LSS+ F+        ++T LNL  N       +L   S          L V +    
Sbjct: 114 --NLSSSWFKPLS-----SLTFLNLLGNP----YKTLGETSLFSHLTKLQILRVGNMDTF 162

Query: 493 GELPDCLLRW-QALAVLNLANNNFSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGT 550
            ++          L  L +  ++              P SLK    +  +     +    
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQ---------SYEPKSLKSIQNVSHLILHMKQHI-L 212

Query: 551 IPAWIGDTLPKLAILSLRSNQFHG----SIP----RNLCRLSKIQLLDFSLNSISGAIPK 602
           +     D    +  L LR           +      +L +    + +  +  S+   + K
Sbjct: 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 603 CINNLTAMVEKASSNSTITHI 623
            +N ++ ++E   S + +  +
Sbjct: 272 LLNQISGLLELEFSRNQLKSV 292

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 50/209 (23%)

Query: 398 DAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVT 457
           +++PS    L+  +  L+LS+N +                  +S++D +  V     N+ 
Sbjct: 44  NSIPS---GLTEAVKSLDLSNNRIT----------------YISNSDLQRCV-----NLQ 79

Query: 458 SLNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLSGELPDCLLRWQALAVLNLA 511
           +L L++N        + +I  + FS      +LD+S N LS           +L  LNL 
Sbjct: 80  ALVLTSNG-------INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132

Query: 512 NNNFSGNFLTFFVGEIPPS--LKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRS 569
            N +           +  +       +L+I+  G+      I       L  L  L + +
Sbjct: 133 GNPYK---------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183

Query: 570 NQFHGSIPRN-LCRLSKIQLLDFSLNSIS 597
           +    S     L  +  +  L   +    
Sbjct: 184 SDLQ-SYEPKSLKSIQNVSHLILHMKQHI 211

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.7 bits (243), Expect = 2e-21
 Identities = 67/350 (19%), Positives = 117/350 (33%), Gaps = 57/350 (16%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLA 144
            +++     Y ++            + N + SL    L  C ++                
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSL----LKECLINQ------------FSE 63

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQL 204
           L LN   L+  +PD        +  L ++ N + ++ +   +   L+ L   DN L+  L
Sbjct: 64  LQLNRLNLSS-LPDNLPPQ---ITVLEITQNALISLPELPAS---LEYLDACDNRLS-TL 115

Query: 205 PELFLNLSG--CSKN----------SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKL 252
           PEL  +L       N           LE +    N+LT  LP+    +SL+ L + +N+L
Sbjct: 116 PELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLT-MLPE--LPTSLEVLSVRNNQL 172

Query: 253 DGSFPEKFRKPSPLVILNLDGNQLWGSLPD-----LSVFPFLTRLDVSDSRLNGTVSEGL 307
               PE    P  L  L++  N L  SLP                   ++R+   + E +
Sbjct: 173 -TFLPE---LPESLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENI 226

Query: 308 GRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGL 367
             L     + L  N L    +     +LS+                F      Q      
Sbjct: 227 LSLDPTCTIILEDNPL----SSRIRESLSQQTAQPDYHGP---RIYFSMSDGQQNTLHRP 279

Query: 368 LHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLS 417
           L   +   FP+  QS  +  +      E ++   ++   LS  +   N S
Sbjct: 280 LADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTS 329

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.9 bits (189), Expect = 7e-15
 Identities = 50/350 (14%), Positives = 110/350 (31%), Gaps = 89/350 (25%)

Query: 292 LDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALN 351
            +   + ++GT ++      K E   L G +    ++      +++   +  +  +L+  
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLS-- 72

Query: 352 FSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNL 411
                               L  + P  +        L+I+   +  ++P        +L
Sbjct: 73  -------------------SLPDNLPPQITV------LEITQNALI-SLPELP----ASL 102

Query: 412 YYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFS---G 468
            YL+   N L                           +P +P ++  L++ NN+ +    
Sbjct: 103 EYLDACDNRLST-------------------------LPELPASLKHLDVDNNQLTMLPE 137

Query: 469 PISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIP 528
             + L         Y++  +N L+  LP+      +L VL++ NN  +          +P
Sbjct: 138 LPALL--------EYINADNNQLT-MLPELP---TSLEVLSVRNNQLT---------FLP 176

Query: 529 PSLKKCNELKIIDAGDNKFSGTIPAWIGD---TLPKLAILSLRSNQFHGSIPRNLCRLSK 585
              +    L+ +D   N    ++PA       +         R N+    IP N+  L  
Sbjct: 177 ELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDP 231

Query: 586 IQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYVYYRSATLDGF 635
              +    N +S  I + ++  TA  +        +       +      
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA 281

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.2 bits (174), Expect = 4e-13
 Identities = 61/330 (18%), Positives = 101/330 (30%), Gaps = 90/330 (27%)

Query: 195 LFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDG 254
            F N ++G   + F            +     N+    L +    +   EL L    L  
Sbjct: 17  SFYNTISGTYADYFSAWD--KWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLS- 72

Query: 255 SFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLE 314
           S P+    P  + +L +  N L  SLP+L     L  LD  D+RL+ T+ E    L  L 
Sbjct: 73  SLPDNL--PPQITVLEITQNAL-ISLPEL--PASLEYLDACDNRLS-TLPELPASLKHL- 125

Query: 315 FLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLP--PFQLESIGLLHCKL 372
             D+  N L  +         + L+Y++   N L +      LP  P  LE + + + +L
Sbjct: 126 --DVDNNQLTMLPEL-----PALLEYINADNNQLTM------LPELPTSLEVLSVRNNQL 172

Query: 373 GPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNY 432
               P+  +                            +L  L++S N LE          
Sbjct: 173 T-FLPELPE----------------------------SLEALDVSTNLLES--------- 194

Query: 433 AGYPGIDLSSNDFEGPVPPVPGNVTS-------LNLSNNKFSGPISSLCSISGEYFSYLD 485
                           +P VP                 N+ +    ++ S+       + 
Sbjct: 195 ----------------LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPT--CTII 236

Query: 486 VSDNLLSGELPDCLLRWQALAVLNLANNNF 515
           + DN LS       L  Q           +
Sbjct: 237 LEDNPLS-SRIRESLSQQTAQPDYHGPRIY 265

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 36/159 (22%)

Query: 470 ISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF-------------- 515
           +S +  I+  +    +   N +SG   D    W       L   N               
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 516 ------SGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRS 569
                 +   L+     +P +L    ++ +++   N    ++P         L  L    
Sbjct: 61  FSELQLNRLNLS----SLPDNL--PPQITVLEITQNALI-SLPELPAS----LEYLDACD 109

Query: 570 NQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLT 608
           N+   ++P     L     LD   N ++  +P+    L 
Sbjct: 110 NRLS-TLPELPASLKH---LDVDNNQLT-MLPELPALLE 143

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 92.0 bits (229), Expect = 6e-21
 Identities = 60/191 (31%), Positives = 85/191 (44%), Gaps = 17/191 (8%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLF 196
           I ++   LDL SN+L+  +P  AF  +T L+ L L+ N++  +    F  +  L+TL + 
Sbjct: 35  IPADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDG 254
           DN L      +F  L      +L  L+L  N+L  SLP       + L  L L  N+L  
Sbjct: 94  DNKLQALPIGVFDQLV-----NLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ- 146

Query: 255 SFPEK-FRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLG---RL 310
           S P+  F K + L  L L  NQL   +P+   F  LT L       N       G    L
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQL-KRVPE-GAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204

Query: 311 SKLEFLDLFGN 321
            KL+ L L  N
Sbjct: 205 EKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.9 bits (203), Expect = 1e-17
 Identities = 59/185 (31%), Positives = 86/185 (46%), Gaps = 21/185 (11%)

Query: 115 TSLTLLDLSS---CGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLN 171
                LDL S     L + A+H L    + L  L LN N+L   +P   F  +  L+ L 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRL----TKLRLLYLNDNKLQT-LPAGIFKELKNLETLW 91

Query: 172 LSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPE-LFLNLSGCSKNSLEILKLGGNKL 229
           ++ N++ A+    F  +  L  L L  N L   LP  +F +L+      L  L LG N+L
Sbjct: 92  VTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLT-----KLTYLSLGYNEL 145

Query: 230 TGSLPD--ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFP 287
             SLP     + +SL+EL L++N+L       F K + L  L LD NQL   +P+   F 
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL-KRVPE-GAFD 202

Query: 288 FLTRL 292
            L +L
Sbjct: 203 SLEKL 207

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 47/172 (27%), Positives = 75/172 (43%), Gaps = 14/172 (8%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLA 144
             L  LR LYL  + L ++            +L  L ++   L  +    +F    NL  
Sbjct: 58  HRLTKLRLLYLNDNKLQTL---PAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAE 113

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQ 203
           L L+ NQL   +P   F ++T L +L+L  N++ ++ K  F  +  LK L L++N L   
Sbjct: 114 LRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLD 253
               F  L+      L+ LKL  N+L   +P+        L+ L L +N  D
Sbjct: 173 PEGAFDKLT-----ELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 92.4 bits (230), Expect = 4e-20
 Identities = 92/447 (20%), Positives = 151/447 (33%), Gaps = 77/447 (17%)

Query: 92  DLYLASSTLLSINRPSLSSMNSS--TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNS 149
           D   AS    +    +  +++     +LT LD  +  +++       +  + L  L   S
Sbjct: 17  DDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG---IEKLTGLTKLICTS 73

Query: 150 NQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLT----GQLP 205
           N +   +     S  T L +L    N+++ +      +  L  L+   N LT     Q P
Sbjct: 74  NNITT-LD---LSQNTNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLTKLDVSQNP 127

Query: 206 EL-FLNLSGCS--------KNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSF 256
            L +LN +  +           L  L    NK   +  D+T  + L  L    NK+    
Sbjct: 128 LLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKI-TKLDVTPQTQLTTLDCSFNKITELD 186

Query: 257 PEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFL 316
             + +    L  LN D N +  +  DL+    LT LD S ++L       +  L++L + 
Sbjct: 187 VSQNKL---LNRLNCDTNNI--TKLDLNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYF 238

Query: 317 DLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHF 376
           D   N     +TE  VS LSKL  +      L            QL       C+     
Sbjct: 239 DCSVNP----LTELDVSTLSKLTTLHCIQTDLL-EIDLTHNT--QLIYFQAEGCRKIKEL 291

Query: 377 PKWLQSQKNYYFLDISDTEISDAVPSWFWDLS--PNLYYLNLSHNHLEGTVLDLSLNYAG 434
              +      Y LD     I++       DLS  P L YL L++  L  T LD+S N   
Sbjct: 292 D--VTHNTQLYLLDCQAAGITE------LDLSQNPKLVYLYLNNTEL--TELDVSHNT-- 339

Query: 435 YPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGE 494
                                + SL+  N       SS+  I     +    ++      
Sbjct: 340 --------------------KLKSLSCVNAHIQD-FSSVGKIP--ALNNNFEAEGQTITM 376

Query: 495 LPDCLLRWQALAVLNLANNNFSGNFLT 521
             + L        ++    +  GN + 
Sbjct: 377 PKETLTNNSLTIAVSPDLLDQFGNPMN 403

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 43/267 (16%), Positives = 85/267 (31%), Gaps = 35/267 (13%)

Query: 82  VTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSN 141
           + ++    L +L    +  ++        +   T LT LD S   ++             
Sbjct: 142 IDVSHNTQLTELDCHLNKKIT-----KLDVTPQTQLTTLDCSFNKITELDVSQN----KL 192

Query: 142 LLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLT 201
           L  L+ ++N +   +     +    L  L+ S N+++ I      +  L       N LT
Sbjct: 193 LNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEI--DVTPLTQLTYFDCSVNPLT 246

Query: 202 GQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFR 261
                    L   + + L  L      L   + D+T  + L        +          
Sbjct: 247 --------ELDVSTLSKLTTLHCIQTDLL-EI-DLTHNTQLIYFQAEGCRKIKELD--VT 294

Query: 262 KPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGN 321
             + L +L+     +   L DLS  P L  L ++++ L       +   +KL+ L     
Sbjct: 295 HNTQLYLLDCQAAGI-TEL-DLSQNPKLVYLYLNNTEL---TELDVSHNTKLKSLSCVNA 349

Query: 322 SLEGMITESHVSNLSKLKYMDFSFNSL 348
            ++     S V  +  L     +    
Sbjct: 350 HIQDF---SSVGKIPALNNNFEAEGQT 373

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 35/186 (18%), Positives = 65/186 (34%), Gaps = 12/186 (6%)

Query: 65  LSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSS 124
           +S  S+   +    T ++ I    + + +Y  +     I    ++     T L LLD  +
Sbjct: 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN---TQLYLLDCQA 306

Query: 125 CGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSF 184
            G++          +  L+ L LN+ +L   +     S+ T L+ L+     I   S S 
Sbjct: 307 AGITELD----LSQNPKLVYLYLNNTELTE-LD---VSHNTKLKSLSCVNAHIQDFS-SV 357

Query: 185 GNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQE 244
           G +  L      +        E   N S     S ++L   GN +     D   +     
Sbjct: 358 GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417

Query: 245 LHLFDN 250
              ++N
Sbjct: 418 TITWEN 423

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 89.9 bits (223), Expect = 1e-19
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 18/172 (10%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF 196
           + S    LDL+ N L+    ++  + +T L  L LS N ++ I S++F  +  L+ L L 
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEF---SSLQELHLFDNKL- 252
            N+L      LF +L      +LE+L L  N +   +     F   + LQ+L+L  N++ 
Sbjct: 97  SNHLHTLDEFLFSDLQ-----ALEVLLLYNNHIV-VVDRNA-FEDMAQLQKLYLSQNQIS 149

Query: 253 ---DGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNG 301
                   +  + P  L++L+L  N+L   LP  +    L     +   L+ 
Sbjct: 150 RFPVELIKDGNKLPK-LMLLDLSSNKL-KKLPL-TDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 88.7 bits (220), Expect = 3e-19
 Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 13/170 (7%)

Query: 114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLS 173
            +   LLDLS   LS     W     +NL +L L+ N L   I   AF  +  L++L+LS
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLS 96

Query: 174 LNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLT-- 230
            N +  +    F ++  L+ L L++N++       F +++      L+ L L  N+++  
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-----QLQKLYLSQNQISRF 151

Query: 231 --GSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLV--ILNLDGNQL 276
               + D  +   L  L L  NKL        +K    V   L L  N L
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 71.4 bits (175), Expect = 2e-13
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 39/173 (22%)

Query: 87  LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALD 146
           L +L  L L+ + L  I+  +   +                             NL  LD
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPV----------------------------PNLRYLD 94

Query: 147 LNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLP 205
           L+SN L   + ++ FS++ AL+ L L  N I  +   +F +M  L+ L+L  N ++    
Sbjct: 95  LSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 206 ELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSL-----QELHLFDNKLD 253
           EL  + +      L +L L  NKL   LP       L       L+L +N L+
Sbjct: 154 ELIKDGNKLP--KLMLLDLSSNKLK-KLPLTD-LQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 50/207 (24%), Positives = 73/207 (35%), Gaps = 50/207 (24%)

Query: 399 AVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTS 458
            VP     L      L+LSHN+L  + L                            N+ S
Sbjct: 32  NVPQ---SLPSYTALLDLSHNNL--SRLRAEWTPTRLT------------------NLHS 68

Query: 459 LNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLSGELPDCLLRWQALAVLNLAN 512
           L LS+N  +        IS E F       YLD+S N L           QAL VL L N
Sbjct: 69  LLLSHNHLN-------FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 513 NNFSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWI---GDTLPKLAILSLR 568
           N+            +   + +   +L+ +    N+ S   P  +   G+ LPKL +L L 
Sbjct: 122 NHIV---------VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLS 171

Query: 569 SNQFHGSIPRNLCRLSKIQLLDFSLNS 595
           SN+       +L +L         L++
Sbjct: 172 SNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 39/170 (22%), Positives = 64/170 (37%), Gaps = 17/170 (10%)

Query: 263 PSPLVILNLDGNQLWGSLPDLSVF---PFLTRLDVSDSRLNGTVSEG-LGRLSKLEFLDL 318
           PS   +L+L  N L   L           L  L +S + LN  +S      +  L +LDL
Sbjct: 38  PSYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 319 FGNSLEGMITESHVSNLSKLKYMDFSFNSLAL--NFSFGWLPPFQLESIGLLHCKLGPHF 376
             N L   + E   S+L  L+ +    N + +    +F  +   QL+ + L   ++   F
Sbjct: 96  SSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA--QLQKLYLSQNQIS-RF 151

Query: 377 P----KWLQSQKNYYFLDISDTEISDAVPSWFWDL-SPNLYYLNLSHNHL 421
           P    K          LD+S  ++     +    L +     L L +N L
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 86.6 bits (215), Expect = 2e-19
 Identities = 41/214 (19%), Positives = 81/214 (37%), Gaps = 22/214 (10%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLN-QISAI-SKSFGNMCGLKTLHL 195
           +  +   L L    L   IP +AFSN+  +  + +S++  +  + S SF N+  +  + +
Sbjct: 29  LPPSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI 87

Query: 196 FDNNLTGQLP-ELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSS---LQELHLFDNK 251
            +      +  +    L       L+ L +    L    PD+T+  S      L + DN 
Sbjct: 88  RNTRNLTYIDPDALKELP-----LLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNP 141

Query: 252 LDGSFPEK-FRK-PSPLVILNLDGNQLWGSLPDLSVF--PFLTRLDVSDSRLNGTVSEGL 307
              S P   F+   +  + L L  N    S+     F    L  + ++ ++    + +  
Sbjct: 142 YMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG-YAFNGTKLDAVYLNKNKYLTVIDKDA 199

Query: 308 --GRLSKLEFLDLFGNSLEGMITESHVSNLSKLK 339
             G  S    LD+   S+   +    + +L +L 
Sbjct: 200 FGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 38/216 (17%), Positives = 76/216 (35%), Gaps = 24/216 (11%)

Query: 87  LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCG----LSNSAYHWLFKISSNL 142
             S + L L  + L +I   + S++    +++ + +S       L + +++ L    S +
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNL---PNISRIYVSIDVTLQQLESHSFYNL----SKV 82

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS--KSFGNMCGLKTLHLFDNNL 200
             +++ + +    I   A   +  L+ L +    +          +      L + DN  
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

Query: 201 TGQLPE-LFLNLSGCSKNSLEILKLGGNKLTGSLPDIT-EFSSLQELHLFDNKLDGSFPE 258
              +P   F  L     N    LKL  N  T S+       + L  ++L  NK      +
Sbjct: 143 MTSIPVNAFQGLC----NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDK 197

Query: 259 K-FRK-PSPLVILNLDGNQLWGSLPDLSVFPFLTRL 292
             F    S   +L++    +  +LP       L  L
Sbjct: 198 DAFGGVYSGPSLLDVSQTSV-TALPS-KGLEHLKEL 231

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 47/313 (15%), Positives = 86/313 (27%), Gaps = 93/313 (29%)

Query: 212 SGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNL 271
             C  +  E  ++    +   +P +    S Q L L +  L       F     +  + +
Sbjct: 6   PPCECHQEEDFRVTCKDIQ-RIPSLP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYV 62

Query: 272 DGNQLWGSLPDLSVF---PFLTRLDVSDSRLNGTVSEG-LGRLSKLEFLDLFGNSLEGMI 327
             +     L     F     +T +++ ++R    +    L  L  L+FL +F   L+   
Sbjct: 63  SIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP 121

Query: 328 TESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYY 387
             + V +      ++ + N               + SI                      
Sbjct: 122 DLTKVYSTDIFFILEITDNP-------------YMTSIP--------------------- 147

Query: 388 FLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEG 447
                         + F  L      L L +N                    +    F G
Sbjct: 148 -------------VNAFQGLCNETLTLKLYNNGFT----------------SVQGYAFNG 178

Query: 448 PVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS-------YLDVSDNLLSGELPDCLL 500
                   + ++ L+ NK+      L  I  + F         LDVS   ++  LP   L
Sbjct: 179 T------KLDAVYLNKNKY------LTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGL 225

Query: 501 RWQALAVLNLANN 513
             + L  L   N 
Sbjct: 226 --EHLKELIARNT 236

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 50/243 (20%), Positives = 101/243 (41%), Gaps = 25/243 (10%)

Query: 81  IVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISS 140
           I    +LA+   +    S +      + + +     +T L     G++        +  +
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDT--VTQADL---DGITTLSAFGTGVTTIEG---VQYLN 63

Query: 141 NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNL 200
           NL+ L+L  NQ+    P     N+T +  L LS N +  +S +   +  +KTL L    +
Sbjct: 64  NLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQI 119

Query: 201 TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKF 260
           T         L+G S   L++L L  N++T ++  +   ++LQ L + + ++  S     
Sbjct: 120 TD-----VTPLAGLSN--LQVLYLDLNQIT-NISPLAGLTNLQYLSIGNAQV--SDLTPL 169

Query: 261 RKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFG 320
              S L  L  D N++   +  L+  P L  + + ++++  +    L   S L  + L  
Sbjct: 170 ANLSKLTTLKADDNKI-SDISPLASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTN 226

Query: 321 NSL 323
            ++
Sbjct: 227 QTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.3 bits (201), Expect = 5e-17
 Identities = 46/270 (17%), Positives = 106/270 (39%), Gaps = 26/270 (9%)

Query: 81  IVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISS 140
            VT   L  +  L    + + +I       +    +L  L+L    +++ A     K  +
Sbjct: 34  TVTQADLDGITTLSAFGTGVTTI-----EGVQYLNNLIGLELKDNQITDLAP---LKNLT 85

Query: 141 NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNL 200
            +  L+L+ N L         + + +++ L+L+  QI+ ++     +  L+ L+L  N +
Sbjct: 86  KITELELSGNPLKNVSA---IAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQI 141

Query: 201 TGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKF 260
           T         L+G +   L+ L +G  +++  L  +   S L  L   DNK+  S     
Sbjct: 142 TN-----ISPLAGLTN--LQYLSIGNAQVS-DLTPLANLSKLTTLKADDNKI--SDISPL 191

Query: 261 RKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFG 320
                L+ ++L  NQ+   +  L+    L  + +++       ++ +   + L   ++  
Sbjct: 192 ASLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLTN---QTITNQPVFYNNNLVVPNVVK 247

Query: 321 NSLEGMITESHVSNLSKLKYMDFSFNSLAL 350
                 I  + +S+       + ++N  + 
Sbjct: 248 GPSGAPIAPATISDNGTYASPNLTWNLTSF 277

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 41/234 (17%), Positives = 85/234 (36%), Gaps = 23/234 (9%)

Query: 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSL 174
            +   +      ++++           +  L      +   I       +  L  L L  
Sbjct: 19  ANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTT-IE--GVQYLNNLIGLELKD 72

Query: 175 NQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP 234
           NQI+ ++    N+  +  L L  N L          ++G     ++ L L   ++T  + 
Sbjct: 73  NQITDLA-PLKNLTKITELELSGNPLKN-----VSAIAGLQS--IKTLDLTSTQIT-DVT 123

Query: 235 DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDV 294
            +   S+LQ L+L  N++  +        + L  L++   Q+   L  L+    LT L  
Sbjct: 124 PLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQV-SDLTPLANLSKLTTLKA 180

Query: 295 SDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSL 348
            D+++  +    L  L  L  + L  N +      S ++N S L  +  +  ++
Sbjct: 181 DDNKI--SDISPLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.2 bits (193), Expect = 5e-16
 Identities = 55/323 (17%), Positives = 116/323 (35%), Gaps = 27/323 (8%)

Query: 147 LNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPE 206
                +    PD     +     +    + ++    +  ++ G+ TL  F   +T     
Sbjct: 4   TQPTAINVIFPD---PALANAIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVT----- 54

Query: 207 LFLNLSGCSK-NSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSP 265
               + G    N+L  L+L  N++T  L  +   + + EL L  N L             
Sbjct: 55  ---TIEGVQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNPL--KNVSAIAGLQS 108

Query: 266 LVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
           +  L+L   Q+   +  L+    L  L +  +++  T    L  L+ L++L +    +  
Sbjct: 109 IKTLDLTSTQI-TDVTPLAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSD 165

Query: 326 MITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKN 385
           +   + ++NLSKL  +    N ++       LP   L  + L + ++    P  L +  N
Sbjct: 166 L---TPLANLSKLTTLKADDNKISDISPLASLP--NLIEVHLKNNQISDVSP--LANTSN 218

Query: 386 YYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDF 445
            + + +++  I++    +  +L         S   +    +  +  YA  P +  +   F
Sbjct: 219 LFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYA-SPNLTWNLTSF 277

Query: 446 EGPVPPVPGNVTSLNLSNNKFSG 468
              V        +   +   FSG
Sbjct: 278 INNVSYTFNQSVTFKNTTVPFSG 300

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 52/305 (17%), Positives = 108/305 (35%), Gaps = 77/305 (25%)

Query: 305 EGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLES 364
                L+    +    +++   +T    ++L  +  +                    + +
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGT--------------GVTT 55

Query: 365 IGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGT 424
           I            + +Q   N   L++ D +I+D  P    +L   +  L LS N L+  
Sbjct: 56  I------------EGVQYLNNLIGLELKDNQITDLAP--LKNL-TKITELELSGNPLK-- 98

Query: 425 VLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISG-EYFSY 483
                         ++S+    G       ++ +L+L++ +    I+ +  ++G      
Sbjct: 99  --------------NVSA--IAGLQ-----SIKTLDLTSTQ----ITDVTPLAGLSNLQV 133

Query: 484 LDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAG 543
           L +  N ++  +   L     L  L++ N   S         ++ P L   ++L  + A 
Sbjct: 134 LYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS---------DLTP-LANLSKLTTLKAD 181

Query: 544 DNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKC 603
           DNK S  I      +LP L  + L++NQ     P  L   S + ++  +  +I+      
Sbjct: 182 DNKIS-DISPL--ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFY 236

Query: 604 INNLT 608
            NNL 
Sbjct: 237 NNNLV 241

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.6 bits (219), Expect = 2e-18
 Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 23/235 (9%)

Query: 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDY-AFSNMTALQHLNLS 173
                 +L    ++++         +++  +  N++     I        +  +  L L+
Sbjct: 21  AETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSD----IKSVQGIQYLPNVTKLFLN 73

Query: 174 LNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSL 233
            N+++ I     N+  L  L L +N +         +L    K  L+ L L  N ++  +
Sbjct: 74  GNKLTDIK-PLTNLKNLGWLFLDENKIKD-----LSSLKDLKK--LKSLSLEHNGIS-DI 124

Query: 234 PDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLD 293
             +     L+ L+L +NK+  +      + + L  L+L+ NQ+   +  L+    L  L 
Sbjct: 125 NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLY 181

Query: 294 VSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSL 348
           +S + +  +    L  L  L+ L+LF          +H SNL     +  +  SL
Sbjct: 182 LSKNHI--SDLRALAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.8 bits (183), Expect = 3e-14
 Identities = 54/309 (17%), Positives = 94/309 (30%), Gaps = 75/309 (24%)

Query: 142 LLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLT 201
           +      S  +    PD            NL    ++    +   +  +  +   ++++ 
Sbjct: 1   MGETITVSTPIKQIFPD---DAFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIK 56

Query: 202 GQLPELFLNLSGCSK-NSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKL-DGSFPEK 259
                   ++ G     ++  L L GNKLT  +  +T   +L  L L +NK+ D S  + 
Sbjct: 57  --------SVQGIQYLPNVTKLFLNGNKLT-DIKPLTNLKNLGWLFLDENKIKDLSSLKD 107

Query: 260 FRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLF 319
            +K   L  L+L+ N +                         +   GL  L +LE L L 
Sbjct: 108 LKK---LKSLSLEHNGI-------------------------SDINGLVHLPQLESLYLG 139

Query: 320 GNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKW 379
            N +  +   + +S L+KL  +    N              Q+  I  L           
Sbjct: 140 NNKITDI---TVLSRLTKLDTLSLEDN--------------QISDIVPL----------- 171

Query: 380 LQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGID 439
                    L +S   ISD        L  NL  L L         ++   N      + 
Sbjct: 172 -AGLTKLQNLYLSKNHISDLRA--LAGL-KNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 440 LSSNDFEGP 448
            +      P
Sbjct: 228 NTDGSLVTP 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 63.6 bits (154), Expect = 1e-10
 Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 20/176 (11%)

Query: 79  TCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI 138
           T I  +T+L +L  L+L  + +  +   SL  +     L  L L   G+S+         
Sbjct: 78  TDIKPLTNLKNLGWLFLDENKIKDL--SSLKDL---KKLKSLSLEHNGISDING---LVH 129

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDN 198
              L +L L +N++         S +T L  L+L  NQIS I      +  L+ L+L  N
Sbjct: 130 LPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKN 185

Query: 199 NLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLD 253
           +++         L+G     L++L+L   +      +  +       +   D  L 
Sbjct: 186 HISD-----LRALAGLKN--LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.3 bits (130), Expect = 9e-08
 Identities = 49/324 (15%), Positives = 98/324 (30%), Gaps = 75/324 (23%)

Query: 305 EGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLES 364
                 ++    +L   S+   +T    + L+ +  +  + +               ++S
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNS--------------DIKS 57

Query: 365 IGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGT 424
           +            + +Q   N   L ++  +++D  P    +L  NL +L L  N ++  
Sbjct: 58  V------------QGIQYLPNVTKLFLNGNKLTDIKP--LTNL-KNLGWLFLDENKIK-- 100

Query: 425 VLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISG-EYFSY 483
             DLS          L               + SL+L +N     IS +  +        
Sbjct: 101 --DLS---------SLKDLK----------KLKSLSLEHNG----ISDINGLVHLPQLES 135

Query: 484 LDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAG 543
           L + +N ++      L R   L  L+L +N  S         +I P L    +L+ +   
Sbjct: 136 LYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS---------DIVP-LAGLTKLQNLYLS 183

Query: 544 DNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKC 603
            N  S          L  L +L L S +       +   L     +  +  S+       
Sbjct: 184 KNHISDLRAL---AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240

Query: 604 INNLTAMVEKASSNSTITHIYVYY 627
            +               T+   + 
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEVSFI 264

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.4 bits (112), Expect = 1e-05
 Identities = 41/195 (21%), Positives = 71/195 (36%), Gaps = 40/195 (20%)

Query: 455 NVTSLNLSNNKFSGPISSLCSISGEYFS---YLDVSDNLLSGELPDCLLRWQALAVLNLA 511
           ++  +  +N+     I S+  I  +Y      L ++ N L+   P   L+   L  L L 
Sbjct: 44  SIDQIIANNSD----IKSVQGI--QYLPNVTKLFLNGNKLTDIKPLTNLK--NLGWLFLD 95

Query: 512 NN-----------------NFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAW 554
            N                 +   N ++    +I   L    +L+ +  G+NK +      
Sbjct: 96  ENKIKDLSSLKDLKKLKSLSLEHNGIS----DING-LVHLPQLESLYLGNNKITDITVL- 149

Query: 555 IGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKA 614
               L KL  LSL  NQ    I   L  L+K+Q L  S N IS    + +  L  +    
Sbjct: 150 --SRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLE 203

Query: 615 SSNSTITHIYVYYRS 629
             +    +  + ++S
Sbjct: 204 LFSQECLNKPINHQS 218

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 82.5 bits (204), Expect = 2e-17
 Identities = 52/238 (21%), Positives = 81/238 (34%), Gaps = 44/238 (18%)

Query: 87  LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALD 146
           +AS  ++      L ++  P     +     T+L LS   L  +         + L  L+
Sbjct: 9   VASHLEVNCDKRNLTAL--PP----DLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLN 61

Query: 147 LNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPE 206
           L+  +L   +       +  L  L+LS NQ+ ++      +  L  L +  N LT     
Sbjct: 62  LDRAELTK-LQ--VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 207 LFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDGSFPEK-FRKP 263
               L       L+ L L GN+L  +LP   +T    L++L L +N L    P       
Sbjct: 119 ALRGLG-----ELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171

Query: 264 SPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGN 321
             L  L L  N L                         T+ +G      L F  L GN
Sbjct: 172 ENLDTLLLQENSL------------------------YTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 46/202 (22%), Positives = 69/202 (34%), Gaps = 43/202 (21%)

Query: 399 AVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTS 458
           A+P    DL  +   L+LS N L                   S              +T 
Sbjct: 24  ALPP---DLPKDTTILHLSENLLY----------------TFSLATLMPYT-----RLTQ 59

Query: 459 LNLSNNKFSGPISSLCSISG-EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSG 517
           LNL   +    ++ L           LD+S N L   LP       AL VL+++ N  + 
Sbjct: 60  LNLDRAE----LTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT- 113

Query: 518 NFLTFFVGEIPPSL-KKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSI 576
                    +P    +   EL+ +    N+   T+P  +    PKL  LSL +N     +
Sbjct: 114 --------SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-EL 163

Query: 577 PRNLC-RLSKIQLLDFSLNSIS 597
           P  L   L  +  L    NS+ 
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY 185

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 81.4 bits (201), Expect = 7e-17
 Identities = 43/261 (16%), Positives = 84/261 (32%), Gaps = 23/261 (8%)

Query: 97  SSTLLSINRPSLSSM--NSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAG 154
           S+ +       ++ +  +   +   L      L        F    +L  ++++ N +  
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG-AFSGFGDLEKIEISQNDVLE 68

Query: 155 PIPDYAFSNMTALQHLNLS-LNQISAISKS-FGNMCGLKTLHLFDNNLTGQLPELFLNLS 212
            I    FSN+  L  + +   N +  I+   F N+  L+ L + +  +        ++  
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 213 GCSKNSLEILKLGGNKLTGSLPDITEFSSL----QELHLFDNKLDGSFPEKFRKPSPLVI 268
                   +L +  N    ++   + F  L      L L  N +       F       +
Sbjct: 129 -----QKVLLDIQDNINIHTIERNS-FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL 182

Query: 269 LNLDGNQLWGSLPD--LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
              D N L   LP+           LD+S +R++   S GL  L KL     +       
Sbjct: 183 NLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT 241

Query: 327 ITESHVSNLSKLKYMDFSFNS 347
           +       L  L     ++ S
Sbjct: 242 L-----EKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 29/165 (17%), Positives = 57/165 (34%), Gaps = 14/165 (8%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSS-CGLSNSAYHWLFKISSNLL 143
            +L +L+ L ++++ +  +  P +  ++ S    LLD+     +     +    +S   +
Sbjct: 101 QNLPNLQYLLISNTGIKHL--PDVHKIH-SLQKVLLDIQDNINIHTIERNSFVGLSFESV 157

Query: 144 ALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTG 202
            L LN N +   I + AF+     +      N +  +    F    G   L +    +  
Sbjct: 158 ILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216

Query: 203 QLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHL 247
                  NL       L        K    LP + +  +L E  L
Sbjct: 217 LPSYGLENL-----KKLRARSTYNLK---KLPTLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 51/329 (15%), Positives = 94/329 (28%), Gaps = 87/329 (26%)

Query: 269 LNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMIT 328
                +++   +P   +      L    ++L             LE +++  N +  +I 
Sbjct: 14  FLCQESKV-TEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE 71

Query: 329 ESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYF 388
               SNL KL  +     +              L  I           P+  Q+  N  +
Sbjct: 72  ADVFSNLPKLHEIRIEKAN-------------NLLYIN----------PEAFQNLPNLQY 108

Query: 389 LDISDTEISDAVPSWFWDLSPNLYYLNLSHN-HLEGTVLDLSLNYAGYPGIDLSSNDFEG 447
           L IS+T I   +P      S     L++  N ++                  +  N F G
Sbjct: 109 LLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH----------------TIERNSFVG 151

Query: 448 PVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAV 507
               +      L L+ N           I    F+                    Q   +
Sbjct: 152 ----LSFESVILWLNKNGIQ-------EIHNSAFNGT------------------QLDEL 182

Query: 508 LNLANNNFSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILS 566
               NNN           E+P       +   I+D    +   ++P++  + L KL   S
Sbjct: 183 NLSDNNNLE---------ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARS 232

Query: 567 LRSNQFHGSIPRNLCRLSKIQLLDFSLNS 595
             + +    +P  L +L  +     +  S
Sbjct: 233 TYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 44/316 (13%), Positives = 82/316 (25%), Gaps = 91/316 (28%)

Query: 218 SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLW 277
           S  +     +K+T  +P      +  EL     KL       F     L  + +  N + 
Sbjct: 10  SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 67

Query: 278 GSLPDLSVF---PFLTRLDVSDS-RLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVS 333
             +    VF   P L  + +  +  L     E    L  L++L +    ++  + + H  
Sbjct: 68  EVIEA-DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKI 125

Query: 334 NLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISD 393
           +  +   +D   N               + +I                            
Sbjct: 126 HSLQKVLLDIQDNI-------------NIHTIE--------------------------- 145

Query: 394 TEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVP 453
                   + F  LS     L L+ N ++                ++ ++ F G      
Sbjct: 146 -------RNSFVGLSFESVILWLNKNGIQ----------------EIHNSAFNG-----T 177

Query: 454 GNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLSGELPDCLLRW-QALA 506
                    NN        L  +  + F        LD+S   +   LP   L   + L 
Sbjct: 178 QLDELNLSDNNN-------LEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR 229

Query: 507 VLNLANNNFSGNFLTF 522
             +  N          
Sbjct: 230 ARSTYNLKKLPTLEKL 245

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.5 bits (194), Expect = 7e-17
 Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 17/183 (9%)

Query: 141 NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNL 200
             L   L  +       +   + M +L ++ L+   ++ ++        +K L + + + 
Sbjct: 24  AYLNGLLGQSS----TANITEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA 78

Query: 201 TGQLPELFLNLSGCSK-NSLEILKLGGNKLTGS-LPDITEFSSLQELHLFDNKLDGSFPE 258
           T        N +  S  ++LE L++ G  +T   +P+++  +SL  L +  +  D S   
Sbjct: 79  T--------NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 259 KFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDL 318
           K      +  ++L  N     +  L   P L  L++    +      G+    KL  L  
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGV--HDYRGIEDFPKLNQLYA 188

Query: 319 FGN 321
           F  
Sbjct: 189 FSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 5e-14
 Identities = 30/187 (16%), Positives = 68/187 (36%), Gaps = 17/187 (9%)

Query: 67  KNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCG 126
           K   N ++   +T  +T   + SL  + LA+  +  +     + +  + ++  L +++  
Sbjct: 23  KAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-----TGIEYAHNIKDLTINNIH 77

Query: 127 LSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFG 185
            +N          SNL  L +    +         S +T+L  L++S +           
Sbjct: 78  ATNYNP---ISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 186 NMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQEL 245
            +  + ++ L  N     +  L   L       L+ L +  + +      I +F  L +L
Sbjct: 134 TLPKVNSIDLSYNGAITDIMPLK-TLP-----ELKSLNIQFDGVH-DYRGIEDFPKLNQL 186

Query: 246 HLFDNKL 252
           + F   +
Sbjct: 187 YAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.7 bits (148), Expect = 8e-11
 Identities = 40/195 (20%), Positives = 78/195 (40%), Gaps = 42/195 (21%)

Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCS 215
           IPD   S   A  +  L  +  + I+++   M  L  + L + N+T        +L+G  
Sbjct: 17  IPD---STFKAYLNGLLGQSSTANITEA--QMNSLTYITLANINVT--------DLTGIE 63

Query: 216 K-NSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGN 274
             ++++ L +     T +   I+  S+L+ L +    +                      
Sbjct: 64  YAHNIKDLTINNIHAT-NYNPISGLSNLERLRIMGKDVTSD------------------- 103

Query: 275 QLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITE-SHVS 333
                +P+LS    LT LD+S S  + ++   +  L K+  +DL  N     IT+   + 
Sbjct: 104 ----KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA---ITDIMPLK 156

Query: 334 NLSKLKYMDFSFNSL 348
            L +LK ++  F+ +
Sbjct: 157 TLPELKSLNIQFDGV 171

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 7/124 (5%)

Query: 79  TCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI 138
           T    I+ L++L  L +    + S   P+LS +   TSLTLLD+S     +S    +  +
Sbjct: 79  TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGL---TSLTLLDISHSAHDDSILTKINTL 135

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDN 198
              + ++DL+ N     I       +  L+ LN+  + +        +   L  L+ F  
Sbjct: 136 -PKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQ 191

Query: 199 NLTG 202
            + G
Sbjct: 192 TIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 25/186 (13%), Positives = 59/186 (31%), Gaps = 33/186 (17%)

Query: 310 LSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLH 369
           ++ L ++ L   ++  +   + +     +K +  +            L    LE + ++ 
Sbjct: 43  MNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHATNYNPISGLS--NLERLRIMG 97

Query: 370 CKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLS 429
             +       L    +   LDIS +   D++ +    L P +  ++LS+N     ++ L 
Sbjct: 98  KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYNGAITDIMPLK 156

Query: 430 LNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISG-EYFSYLDVSD 488
                     L               + SLN+  +     +     I      + L    
Sbjct: 157 ---------TLP-------------ELKSLNIQFDG----VHDYRGIEDFPKLNQLYAFS 190

Query: 489 NLLSGE 494
             + G+
Sbjct: 191 QTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 505 LAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAI 564
           L  + LAN N +         ++   ++  + +K +   +   +   P      L  L  
Sbjct: 46  LTYITLANINVT---------DLTG-IEYAHNIKDLTINNIHATNYNPI---SGLSNLER 92

Query: 565 LSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVE-KASSNSTITHI 623
           L +           NL  L+ + LLD S ++   +I   IN L  +     S N  IT I
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 19/146 (13%)

Query: 455 NVTSLNLSNNKFS--GPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLAN 512
           N+  L ++N   +   PIS L ++       L +    ++ +    L    +L +L++++
Sbjct: 67  NIKDLTINNIHATNYNPISGLSNLE-----RLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 513 NNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQF 572
           +    + LT         +    ++  ID   N     I      TLP+L  L+++ +  
Sbjct: 122 SAHDDSILT--------KINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGV 171

Query: 573 HGSIPRNLCRLSKIQLLDFSLNSISG 598
           H      +    K+  L     +I G
Sbjct: 172 HDYRG--IEDFPKLNQLYAFSQTIGG 195

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 53/273 (19%), Positives = 106/273 (38%), Gaps = 30/273 (10%)

Query: 81  IVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSN-SAYHWLFKIS 139
           I +  + A      L   ++         + N   S+  +  ++  + +     +L    
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDA-----VTQNELNSIDQIIANNSDIKSVQGIQYL---- 67

Query: 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNN 199
            N+  L LN N+L    P    +N+  L  L L  N++  +S S  ++  LK+L L  N 
Sbjct: 68  PNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNG 123

Query: 200 LTGQLPELFLNLSGCSKNS-LEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPE 258
           ++        +++G      LE L LG NK+T  +  ++  + L  L L DN++  S   
Sbjct: 124 IS--------DINGLVHLPQLESLYLGNNKIT-DITVLSRLTKLDTLSLEDNQI--SDIV 172

Query: 259 KFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDL 318
                + L  L L  N +   L  L+    L  L++        +++ +   S L   + 
Sbjct: 173 PLAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFS---QECLNKPINHQSNLVVPNT 228

Query: 319 FGNSLEGMITESHVSNLSKLKYMDFSFNSLALN 351
             N+   ++T   +S+    +  +  ++     
Sbjct: 229 VKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 261

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 37/185 (20%), Positives = 70/185 (37%), Gaps = 25/185 (13%)

Query: 69  SQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLS 128
           + N +  +       + +L +L  L+L  + +  +     SS+     L  L L   G+S
Sbjct: 76  NGNKLTDIKP-----LANLKNLGWLFLDENKVKDL-----SSLKDLKKLKSLSLEHNGIS 125

Query: 129 NSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMC 188
           +            L +L L +N++         S +T L  L+L  NQIS I      + 
Sbjct: 126 DING---LVHLPQLESLYLGNNKITDITV---LSRLTKLDTLSLEDNQISDIV-PLAGLT 178

Query: 189 GLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG-SLPDITEFSSLQELHL 247
            L+ L+L  N+++         L+G     L++L+L   +     +   +       +  
Sbjct: 179 KLQNLYLSKNHISD-----LRALAGLKN--LDVLELFSQECLNKPINHQSNLVVPNTVKN 231

Query: 248 FDNKL 252
            D  L
Sbjct: 232 TDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 51/297 (17%), Positives = 98/297 (32%), Gaps = 78/297 (26%)

Query: 305 EGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLES 364
                 ++    +L   S+   +T    + L+ +  +  + +               ++S
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNS--------------DIKS 60

Query: 365 IGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGT 424
           +            + +Q   N   L ++  +++D  P    +L  NL +L L  N ++  
Sbjct: 61  V------------QGIQYLPNVTKLFLNGNKLTDIKP--LANL-KNLGWLFLDENKVK-- 103

Query: 425 VLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISG-EYFSY 483
             DLS          L               + SL+L +N     IS +  +        
Sbjct: 104 --DLS---------SLKDLK----------KLKSLSLEHNG----ISDINGLVHLPQLES 138

Query: 484 LDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAG 543
           L + +N ++      L R   L  L+L +N  S         +I P L    +L+ +   
Sbjct: 139 LYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS---------DIVP-LAGLTKLQNLYLS 186

Query: 544 DNKFSGTIPAWIGDTLPKLAILSLRSNQF---HGSIPRNLCRLSKIQLLDFSLNSIS 597
            N  S          L  L +L L S +      +   NL   + ++  D SL +  
Sbjct: 187 KNHISDLRAL---AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPE 240

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 76.2 bits (188), Expect = 7e-16
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 10/140 (7%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLF 196
           +   +  + L  N +   IP  AFS    L+ ++LS NQIS ++  +F  +  L +L L+
Sbjct: 30  LPETITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDIT--EFSSLQELHLFDNKLDG 254
            N +T     LF  L      SL++L L  NK+   L      +  +L  L L+DNKL  
Sbjct: 89  GNKITELPKSLFEGLF-----SLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT 142

Query: 255 SFPEKFRKPSPLVILNLDGN 274
                F     +  ++L  N
Sbjct: 143 IAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 67.0 bits (164), Expect = 9e-13
 Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 17/145 (11%)

Query: 115 TSLTLLDLSS---CGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLN 171
            ++T + L       +   A+         L  +DL++NQ++  +   AF  + +L  L 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPY----KKLRRIDLSNNQISE-LAPDAFQGLRSLNSLV 86

Query: 172 LSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLT 230
           L  N+I+ +    F  +  L+ L L  N +     + F +L      +L +L L  NKL 
Sbjct: 87  LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH-----NLNLLSLYDNKLQ 141

Query: 231 GSLPDIT--EFSSLQELHLFDNKLD 253
            ++   T     ++Q +HL  N   
Sbjct: 142 -TIAKGTFSPLRAIQTMHLAQNPFI 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 30/154 (19%)

Query: 449 VPP-VPGNVTSLNLSNNKFSGPISSLCSISGEYFS------YLDVSDNLLSGELPDCLLR 501
           +P  +P  +T + L  N           I    FS       +D+S+N +S   PD    
Sbjct: 26  IPTNLPETITEIRLEQNTIK-------VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78

Query: 502 WQALAVLNLANNNFSGNFLTFFVGEIPPSL-KKCNELKIIDAGDNKFSGTIPAWIGDTLP 560
            ++L  L L  N  +         E+P SL +    L+++    NK +  +       L 
Sbjct: 79  LRSLNSLVLYGNKIT---------ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLH 128

Query: 561 KLAILSLRSNQFHGSIPR----NLCRLSKIQLLD 590
            L +LSL  N+   +I +     L  +  + L  
Sbjct: 129 NLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 6/112 (5%)

Query: 240 SSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF---PFLTRLDVSD 296
            ++ E+ L  N +    P  F     L  ++L  NQ+   L     F     L  L +  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAP-DAFQGLRSLNSLVLYG 89

Query: 297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSL 348
           +++          L  L+ L L  N +   +      +L  L  +    N L
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKL 140

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.6 bits (191), Expect = 1e-15
 Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 17/248 (6%)

Query: 89  SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS-SNLLALDL 147
           SL+ L + ++ + S        +   + L  L L +  ++ +A   L + +  +L  L+L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 148 NSNQLAGP---IPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQ 203
            +   A     + +        L+ L+++       S +       L TL L DN   G+
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE 188

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLTGSLPDI-----TEFSSLQELHLFDNKLDGSFPE 258
              L   L      +L++L L    +  +   +          LQ L L  N L  +   
Sbjct: 189 RG-LISALCPLKFPTLQVLALRNAGME-TPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246

Query: 259 -KFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLD 317
                PS L  LNL    L   +P   +   L+ LD+S +RL+   S     L ++  L 
Sbjct: 247 PSCDWPSQLNSLNLSFTGL-KQVPK-GLPAKLSVLDLSYNRLDRNPS--PDELPQVGNLS 302

Query: 318 LFGNSLEG 325
           L GN    
Sbjct: 303 LKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 48/231 (20%), Positives = 74/231 (32%), Gaps = 20/231 (8%)

Query: 135 LFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS----KSFGNMCGL 190
           L+    +L  L    +  A            +L+ L +   +I +           + GL
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFS-----SLQEL 245
           + L L +  +TG  P   L  +G     L IL L           + E        L+ L
Sbjct: 98  QELTLENLEVTGTAPPPLLEATG---PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 246 HLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP-----DLSVFPFLTRLDVSD---S 297
            +          E+ R    L  L+L  N   G            FP L  L + +    
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 298 RLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSL 348
             +G  S       +L+ LDL  NSL            S+L  ++ SF  L
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.8 bits (168), Expect = 8e-13
 Identities = 43/229 (18%), Positives = 74/229 (32%), Gaps = 32/229 (13%)

Query: 389 LDISDTEISDAVPSWFWDL--SPNLYYLNLSHNHLEGT------------VLDLSLNYAG 434
           L +    I   +      +     L  L L +  + GT            +  L+L    
Sbjct: 73  LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 435 YPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSG-PISSLCSISGEYFSYLDVSDNLLSG 493
           +   D    + +  + P    +  L+++           +        S LD+SDN   G
Sbjct: 133 WATRDAWLAELQQWLKP---GLKVLSIAQAHSLNFSCEQVRVFPA--LSTLDLSDNPELG 187

Query: 494 ELP----DCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSG 549
           E       C L++  L VL L N       +    G          +L+ +D   N    
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAG-----METPSGVCSALAAARVQLQGLDLSHNSLRD 242

Query: 550 TIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG 598
              A   D   +L  L+L        +P+ L   +K+ +LD S N +  
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 53/303 (17%), Positives = 81/303 (26%), Gaps = 42/303 (13%)

Query: 282 DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYM 341
             S+   L R+D        T       L +L        S   +     V  +S L+ +
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPS-RILFGALRVLGISGLQEL 100

Query: 342 DFSFNSLALNFSFGWLPPF--QLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISD- 398
                 +        L      L  + L +         WL   + +    +    I+  
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQA 159

Query: 399 ---AVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGN 455
                      + P L  L+LS N   G                          P     
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELG-----------------ERGLISALCPLKFPT 202

Query: 456 VTSLNLSNNKFSGPISSLCSISGEYFS--YLDVSDNLLSGELPDCLLRW-QALAVLNLAN 512
           +  L L N     P     +++        LD+S N L          W   L  LNL  
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL-- 260

Query: 513 NNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQF 572
              S   L      +P  L       ++D   N+            LP++  LSL+ N F
Sbjct: 261 ---SFTGLKQVPKGLPAKLS------VLDLSYNRLDRNPSPD---ELPQVGNLSLKGNPF 308

Query: 573 HGS 575
             S
Sbjct: 309 LDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 38/202 (18%), Positives = 61/202 (30%), Gaps = 17/202 (8%)

Query: 86  SLASLRDLYLASSTLLSI-NRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLA 144
           +   L  L L + +  +     +         L +L ++      +      ++   L  
Sbjct: 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALST 177

Query: 145 LDLNSNQLAGPIPDYA---FSNMTALQHLNLSLNQISAISK----SFGNMCGLKTLHLFD 197
           LDL+ N   G     +         LQ L L    +   S            L+ L L  
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237

Query: 198 NNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFP 257
           N+L         +      + L  L L    L      +   + L  L L  N+LD   P
Sbjct: 238 NSLRDAAGAPSCDWP----SQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNRLD-RNP 290

Query: 258 EKFRKPSPLVILNLDGNQLWGS 279
                P  +  L+L GN    S
Sbjct: 291 SPDELPQ-VGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 33/153 (21%), Positives = 48/153 (31%), Gaps = 12/153 (7%)

Query: 83  TITSLASLRDLYLASSTLLS-INRPSLSSMNSSTSLTLLDLSSCGLS--NSAYHWLFKIS 139
            +    +L  L L+ +  L      S        +L +L L + G+   +     L    
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227

Query: 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNN 199
             L  LDL+ N L       +    + L  LNLS   +  + K       L  L L  N 
Sbjct: 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNR 285

Query: 200 LTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS 232
           L        L         +  L L GN    S
Sbjct: 286 LDRNPSPDEL-------PQVGNLSLKGNPFLDS 311

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 75.1 bits (185), Expect = 2e-15
 Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 9/142 (6%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLF 196
           I      L LN+N+         F  +  L+ +N S N+I+ I   +F    G+  + L 
Sbjct: 30  IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDG 254
            N L     ++F  L      SL+ L L  N++T  + +      SS++ L L+DN++  
Sbjct: 90  SNRLENVQHKMFKGLE-----SLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITT 143

Query: 255 SFPEKFRKPSPLVILNLDGNQL 276
             P  F     L  LNL  N  
Sbjct: 144 VAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 10/142 (7%)

Query: 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSL 174
                L L++   +      +FK    L  ++ ++N++   I + AF   + +  + L+ 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTS 90

Query: 175 NQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSL 233
           N++  +  K F  +  LKTL L  N +T    + F+ LS     S+ +L L  N++T ++
Sbjct: 91  NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-----SVRLLSLYDNQIT-TV 144

Query: 234 PDIT--EFSSLQELHLFDNKLD 253
                    SL  L+L  N  +
Sbjct: 145 APGAFDTLHSLSTLNLLANPFN 166

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 17/148 (11%)

Query: 449 VPP-VPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAV 507
           +P  +P     L L+NN+F+   ++           ++ S+N ++            +  
Sbjct: 26  IPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85

Query: 508 LNLANNNFSGNFLTFFVGEIPPSL-KKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILS 566
           + L +N             +   + K    LK +    N+ +  +       L  + +LS
Sbjct: 86  ILLTSNRLE---------NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLS 135

Query: 567 LRSNQFHGSIPR----NLCRLSKIQLLD 590
           L  NQ   ++       L  LS + LL 
Sbjct: 136 LYDNQIT-TVAPGAFDTLHSLSTLNLLA 162

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 44/237 (18%), Positives = 88/237 (37%), Gaps = 22/237 (9%)

Query: 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSL 174
            +    +L    +++       K  S +   + +++ +            T L+ L+LS 
Sbjct: 19  ANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSNIQSLAG---MQFFTNLKELHLSH 72

Query: 175 NQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP 234
           NQIS +S    ++  L+ L +  N L         NL+G     L  L L  N+L     
Sbjct: 73  NQISDLS-PLKDLTKLEELSVNRNRLK--------NLNGIPSACLSRLFLDNNELR-DTD 122

Query: 235 DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDV 294
            +    +L+ L + +NKL           S L +L+L GN++  +   L+    +  +D+
Sbjct: 123 SLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEI-TNTGGLTRLKKVNWIDL 179

Query: 295 SDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALN 351
           +       V+E +    +L   +   +     I+  ++SN          +      
Sbjct: 180 TG---QKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 23/206 (11%)

Query: 147 LNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPE 206
                +    PD     +      NL    ++ +  S   + G++  +  ++N+      
Sbjct: 4   QRPTPINQVFPD---PGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ----- 54

Query: 207 LFLNLSGCSK-NSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSP 265
              +L+G     +L+ L L  N+++  L  + + + L+EL +  N+L             
Sbjct: 55  ---SLAGMQFFTNLKELHLSHNQIS-DLSPLKDLTKLEELSVNRNRLKNLNGIPSAC--- 107

Query: 266 LVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
           L  L LD N+L      L     L  L + +++L       LG LSKLE LDL GN +  
Sbjct: 108 LSRLFLDNNEL-RDTDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITN 164

Query: 326 MITESHVSNLSKLKYMDFSFNSLALN 351
                 ++ L K+ ++D +       
Sbjct: 165 T---GGLTRLKKVNWIDLTGQKCVNE 187

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 24/141 (17%)

Query: 78  NTCIVTITSLASLRDLYLASSTLLSINRPSLSSMN--SSTSLTLLDLSSCGLSNSAYHWL 135
           +  I  ++ L  L  L       LS+NR  L ++N   S  L+ L L +  L +      
Sbjct: 72  HNQISDLSPLKDLTKL-----EELSVNRNRLKNLNGIPSACLSRLFLDNNELRD------ 120

Query: 136 FKISS-----NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGL 190
               S     NL  L + +N+L   +       ++ L+ L+L  N+I+        +  +
Sbjct: 121 --TDSLIHLKNLEILSIRNNKLKSIVM---LGFLSKLEVLDLHGNEITNTG-GLTRLKKV 174

Query: 191 KTLHLFDNNLTGQLPELFLNL 211
             + L       +  +    L
Sbjct: 175 NWIDLTGQKCVNEPVKYQPEL 195

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 75.1 bits (185), Expect = 1e-14
 Identities = 50/291 (17%), Positives = 93/291 (31%), Gaps = 50/291 (17%)

Query: 108 LSSMNSSTSLTLLDLSSCGLSNSAYHWL---FKISSNLLALDLNSNQLAGPIPDY----- 159
            + +    S+  + LS   +   A  WL        +L   + +         +      
Sbjct: 25  FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR 84

Query: 160 ----AFSNMTALQHLNLSLNQI-----SAISKSFGNMCGLKTLHLFDNNLTGQ------- 203
               A      L  + LS N         +         L+ L+L +N L  Q       
Sbjct: 85  LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 144

Query: 204 -LPELFLNLSGCSKNSLEILKLGGNKLT-GSLPDITE----FSSLQELHLFDNKL----- 252
            L EL +N    +   L  +  G N+L  GS+ +  +       L  + +  N +     
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI 204

Query: 253 DGSFPEKFRKPSPLVILNLDGNQL----WGSLPD-LSVFPFLTRLDVSDSRLNGT----V 303
           +    E       L +L+L  N        +L   L  +P L  L ++D  L+      V
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264

Query: 304 SEGLGRLS--KLEFLDLFGNSL--EG--MITESHVSNLSKLKYMDFSFNSL 348
            +   +L    L+ L L  N +  +    +       +  L +++ + N  
Sbjct: 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 28/169 (16%), Positives = 54/169 (31%), Gaps = 19/169 (11%)

Query: 104 NRPSLSSMNSSTSLTLLDLSSCGLSN-SAYHW--LFKISSNLLALDLNSNQL----AGPI 156
                    ++  L  +      L N S   W   F+    L  + +  N +       +
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 157 PDYAFSNMTALQHLNLSLNQI-----SAISKSFGNMCGLKTLHLFDNNLTGQ-LPELFLN 210
                +    L+ L+L  N       SA++ +  +   L+ L L D  L+ +    +   
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267

Query: 211 LSGCSKNSLEILKLGGNKLTGS-LPDITE-----FSSLQELHLFDNKLD 253
            S      L+ L+L  N++    +  +          L  L L  N+  
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 38/254 (14%), Positives = 80/254 (31%), Gaps = 50/254 (19%)

Query: 142 LLALDLNSNQL----AGPIPDYAFSNMTALQHLNLSLNQIS-----AISKSFGNMCGLKT 192
           +    L  + +       +         +++ + LS N I       +S++  +   L+ 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 193 LHLFDNNLTGQLPELFLNL----SGCSKN-SLEILKLGGNKLTGS-LPDITEF----SSL 242
               D        E+   L        K   L  ++L  N    +    + +F    + L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 243 QELHLFDNKL-------------DGSFPEKFRKPSPLVILNLDGNQL-------WGSLPD 282
           + L+L +N L             + +  +K +   PL  +    N+L       W     
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT-- 182

Query: 283 LSVFPFLTRLDVSDSRLN-----GTVSEGLGRLSKLEFLDLFGNSL--EGMITESHV-SN 334
                 L  + +  + +        + EGL    +L+ LDL  N+    G    +    +
Sbjct: 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242

Query: 335 LSKLKYMDFSFNSL 348
              L+ +  +   L
Sbjct: 243 WPNLRELGLNDCLL 256

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 72.4 bits (178), Expect = 2e-14
 Identities = 57/159 (35%), Positives = 78/159 (49%), Gaps = 14/159 (8%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLF 196
           I ++   LDL S  LA  + D  F  +T L  LNL  NQ+  +S   F ++  L TL L 
Sbjct: 33  IPADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLDG 254
           +N L      +F +L+      L+ L LGGN+L  SLP       + L+EL L  N+L  
Sbjct: 92  NNQLASLPLGVFDHLT-----QLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQL-Q 144

Query: 255 SFPEK-FRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRL 292
           S P   F K + L  L+L  NQL  S+P    F  L +L
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQL-QSVPH-GAFDRLGKL 181

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 16/170 (9%)

Query: 88  ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDL 147
           A    L L S+ L +++  +   +   T L L       LS   +  L    + L  L L
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL----TELGTLGL 90

Query: 148 NSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPE 206
            +NQLA  +P   F ++T L  L L  NQ+ ++ S  F  +  LK L L  N L   +P 
Sbjct: 91  ANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPA 148

Query: 207 -LFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLD 253
             F  L+     +L+ L L  N+L  S+P         LQ + LF N+ D
Sbjct: 149 GAFDKLT-----NLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 16/167 (9%)

Query: 113 SSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNL 172
            +  L L       LS++ +  L    + L  L+L+ NQL   +    F ++T L  L L
Sbjct: 36  DTEKLDLQSTGLATLSDATFRGL----TKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL 90

Query: 173 SLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPE-LFLNLSGCSKNSLEILKLGGNKLT 230
           + NQ++++    F ++  L  L+L  N L   LP  +F  L+      L+ L+L  N+L 
Sbjct: 91  ANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLT-----KLKELRLNTNQLQ 144

Query: 231 GSLPD--ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQ 275
            S+P     + ++LQ L L  N+L       F +   L  + L GNQ
Sbjct: 145 -SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 40/113 (35%), Positives = 56/113 (49%), Gaps = 6/113 (5%)

Query: 87  LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALD 146
           L  L  L LA++ L S+  P     +  T L  L L    L  S    +F   + L  L 
Sbjct: 82  LTELGTLGLANNQLASL--PL-GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELR 137

Query: 147 LNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDN 198
           LN+NQL   IP  AF  +T LQ L+LS NQ+ ++   +F  +  L+T+ LF N
Sbjct: 138 LNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.2 bits (183), Expect = 3e-14
 Identities = 83/425 (19%), Positives = 143/425 (33%), Gaps = 60/425 (14%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQIS-----AISKSFGNMCGLKT 192
           +S ++ +LD+   +L+          +   Q + L    ++      IS +      L  
Sbjct: 1   MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 193 LHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG-SLPDITEF----SSLQELHL 247
           L+L  N L        L         ++ L L    LTG     ++       +LQELHL
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 248 FDNKLDGS----FPEKFRKP-SPLVILNLDGNQL----WGSLPD-LSVFPFLTRLDVSDS 297
            DN L  +      E    P   L  L L+   L       L   L   P    L VS++
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 298 RLNGTVSEGLGRL-----SKLEFLDLFGNSL--EGMIT-ESHVSNLSKLKYMDFSFNSL- 348
            +N      L +       +LE L L    +  +        V++ + L+ +    N L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 349 ---ALNFSFGWLPP-FQLESIGLLHCKLGP----HFPKWLQSQKNYYFLDISDTEISDAV 400
                    G L P  +L ++ +  C +         + L+++++   L ++  E+ D  
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 401 PSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPG-IDLSSNDFEGPVPPVPGNVTSL 459
                +         L     +   L +             SS      V      +  L
Sbjct: 301 ARLLCET--------LLEPGCQLESLWVKSCSFTAACCSHFSS------VLAQNRFLLEL 346

Query: 460 NLSNNKFSGP-ISSLCSISGEYFS---YLDVSDNLLSGE----LPDCLLRWQALAVLNLA 511
            +SNN+     +  LC   G+  S    L ++D  +S      L   LL   +L  L+L+
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS 406

Query: 512 NNNFS 516
           NN   
Sbjct: 407 NNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 73.5 bits (181), Expect = 5e-14
 Identities = 81/444 (18%), Positives = 132/444 (29%), Gaps = 95/444 (21%)

Query: 114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQL----AGPIPDYAFSNMTALQH 169
           S  +  LD+    LS++ +  L  +      + L+   L       I   A     AL  
Sbjct: 2   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAE 60

Query: 170 LNLSLNQIS----------------------------------AISKSFGNMCGLKTLHL 195
           LNL  N++                                    +S +   +  L+ LHL
Sbjct: 61  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 196 FDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLT-GSLPDITEF----SSLQELHLFDN 250
            DN L     +L        +  LE L+L    L+  S   +          +EL + +N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 251 KLDGS----FPEKFRKP-SPLVILNLDGNQL----WGSLPD-LSVFPFLTRLDVSDSRLN 300
            ++ +      +  +     L  L L+   +       L   ++    L  L +  ++L 
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240

Query: 301 GTVSEGLGR-----LSKLEFLDLFGNSL--EGMITESHV-SNLSKLKYMDFSFNSL---- 348
                 L        S+L  L ++   +  +G      V      LK +  + N L    
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 349 ALNFSFG-WLPPFQLESIGLLHCKLGP----HFPKWLQSQKNYYFLDISDTEISDAVPSW 403
           A         P  QLES+ +  C        HF   L   +    L IS+  + DA    
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360

Query: 404 FWDL----SPNLYYLNLSHNHL--EG--------------TVLDLSLNYAGYPGIDLSSN 443
                      L  L L+   +                    LDLS N  G  GI     
Sbjct: 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420

Query: 444 DFEGPVPPVPGNVTSLNLSNNKFS 467
               P       +  L L +  +S
Sbjct: 421 SVRQP----GCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 59/302 (19%), Positives = 98/302 (32%), Gaps = 47/302 (15%)

Query: 89  SLRDLYLASSTLLSINRPSLSSM-NSSTSLTLLDLSSCGLSNSAYHWLF----KISSNLL 143
            ++ L L +  L       LSS   +  +L  L LS   L ++    L          L 
Sbjct: 86  KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145

Query: 144 ALDLNSNQL----AGPIPDYAFSNMTALQHLNLSLNQIS-----AISKSFG-NMCGLKTL 193
            L L    L      P+           + L +S N I+      + +    + C L+ L
Sbjct: 146 KLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204

Query: 194 HLFDNNLTGQ-LPELFLNLSGCSKNSLEILKLGGNKLTG------SLPDITEFSSLQELH 246
            L    +T     +L   ++  +  SL  L LG NKL            +   S L+ L 
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKA--SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW 262

Query: 247 LFDNKLD----GSFPEKFRKPSPLVILNLDGNQ--------LWGSLPDLSVFPFLTRLDV 294
           +++  +     G      R    L  L+L GN+        L  +L +      L  L V
Sbjct: 263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG--CQLESLWV 320

Query: 295 SDSRLNGT----VSEGLGRLSKLEFLDLFGNSL--EGM--ITESHVSNLSKLKYMDFSFN 346
                        S  L +   L  L +  N L   G+  + +      S L+ +  +  
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 347 SL 348
            +
Sbjct: 381 DV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 50.7 bits (122), Expect = 8e-07
 Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 28/189 (14%)

Query: 113 SSTSLTLLDLSSCGLSNSAYHWL----FKISSNLLALDLNSNQL----AGPIPDYAFSNM 164
           S  SL  L L S  L +     L       SS L  L +    +     G +        
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR-VLRAK 283

Query: 165 TALQHLNLSLNQIS-----AISKSFGNM-CGLKTLHLFDNNLTGQ-LPELFLNLSGCSKN 217
            +L+ L+L+ N++       + ++     C L++L +   + T          L+     
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR-- 341

Query: 218 SLEILKLGGNKLTGS-LPDITEF-----SSLQELHLFDNKLD----GSFPEKFRKPSPLV 267
            L  L++  N+L  + + ++ +      S L+ L L D  +      S          L 
Sbjct: 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401

Query: 268 ILNLDGNQL 276
            L+L  N L
Sbjct: 402 ELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 16/128 (12%)

Query: 89  SLRDLYLASSTLLSINRPSLSSM-NSSTSLTLLDLSSCGLSNSAYHWLF----KISSNLL 143
            L  L++ S +  +      SS+   +  L  L +S+  L ++    L     +  S L 
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 144 ALDLNSNQL----AGPIPDYAFSNMTALQHLNLSLNQIS-----AISKSF-GNMCGLKTL 193
            L L    +       +         +L+ L+LS N +       + +S     C L+ L
Sbjct: 374 VLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432

Query: 194 HLFDNNLT 201
            L+D   +
Sbjct: 433 VLYDIYWS 440

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 20/203 (9%)

Query: 96  ASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGP 155
           A +   ++ + S++   +   L  +D      S+       +   N+  L L  N+L   
Sbjct: 19  AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH-D 77

Query: 156 IPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
           I   A   +T L +L L+ NQ+ ++    F  +  LK L L +N L      +F  L+  
Sbjct: 78  IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT-- 133

Query: 215 SKNSLEILKLGGNKLTGSLP----DITEFSSLQELHLFDNKLDGSFPEK-FRKPSPLVIL 269
              +L  L L  N+L  SLP    D  + ++L EL L  N+L  S PE  F K + L  L
Sbjct: 134 ---NLTYLNLAHNQLQ-SLPKGVFD--KLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDL 186

Query: 270 NLDGNQLWGSLPDLSVFPFLTRL 292
            L  NQL  S+PD  VF  LT L
Sbjct: 187 RLYQNQL-KSVPD-GVFDRLTSL 207

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 37/210 (17%)

Query: 138 ISSNLLALDLNSNQLAGPIPDY-------------------AFSNMTALQHLNLSLNQIS 178
             +  +  +L    +   +                          +  +++L L  N++ 
Sbjct: 17  AFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLH 76

Query: 179 AISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--I 236
            IS +   +  L  L L  N L      +F  L+     +L+ L L  N+L  SLPD   
Sbjct: 77  DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLT-----NLKELVLVENQLQ-SLPDGVF 129

Query: 237 TEFSSLQELHLFDNKLDGSFPEK-FRKPSPLVILNLDGNQLWGSLPDLSVF---PFLTRL 292
            + ++L  L+L  N+L  S P+  F K + L  L+L  NQL  SLP+  VF     L  L
Sbjct: 130 DKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQL-QSLPE-GVFDKLTQLKDL 186

Query: 293 DVSDSRLNGTVSEG-LGRLSKLEFLDLFGN 321
            +  ++L  +V +G   RL+ L+++ L  N
Sbjct: 187 RLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 11/116 (9%)

Query: 212 SGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNL 271
                       L    +T       E +S+ ++   ++ +     +  +    +  L L
Sbjct: 15  DDAF-AETIKANLKKKSVT-DAVTQNELNSIDQIIANNSDI--KSVQGIQYLPNVRYLAL 70

Query: 272 DGNQLWGSLPDLSVFPFLTRLDVSDSRLNG--TVSEGL-GRLSKLEFLDLFGNSLE 324
            GN+L     D+S    LT L       N   ++  G+  +L+ L+ L L  N L+
Sbjct: 71  GGNKL----HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.5 bits (164), Expect = 3e-12
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 136 FKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLH 194
              + NL  L + + Q    +       +  L++L +  + +  ++  +F     L  L+
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86

Query: 195 LFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLT 230
           L  N L     +    L      SL+ L L GN L 
Sbjct: 87  LSFNALESLSWKTVQGL------SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 24/160 (15%)

Query: 212 SGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNL 271
             C  +    L+   +    SL  +    +L EL++ + +                    
Sbjct: 3   DACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-------------- 48

Query: 272 DGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESH 331
                   L  L     L  L +  S L     +      +L  L+L  N+LE  ++   
Sbjct: 49  -----LRDLRGL---GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKT 99

Query: 332 VSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCK 371
           V  LS L+ +  S N L  + +  WL  ++ E +G +  +
Sbjct: 100 VQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQ 138

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.5 bits (164), Expect = 5e-12
 Identities = 37/237 (15%), Positives = 76/237 (32%), Gaps = 25/237 (10%)

Query: 24  REQAELAMCRRKQVELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVT 83
             Q E  + + +            +L    ++     ++ +  ++ +             
Sbjct: 326 DSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCL 385

Query: 84  ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLL 143
           +T +  +R L       L   + +L   ++  ++  +  +      S +     +     
Sbjct: 386 LTIILLMRAL-----DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440

Query: 144 A----LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNN 199
           A    L L    L           +  + HL+LS N++ A+  +   +  L+ L   DN 
Sbjct: 441 ADVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 497

Query: 200 LTGQLPELFLNLSGCSK-NSLEILKLGGNKLTGSLPDITEFS---SLQELHLFDNKL 252
           L         N+ G +    L+ L L  N+L      I        L  L+L  N L
Sbjct: 498 LE--------NVDGVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.2 bits (158), Expect = 3e-11
 Identities = 46/320 (14%), Positives = 87/320 (27%), Gaps = 45/320 (14%)

Query: 48  ELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPS 107
           E  +S   S  L +   +            +    T         ++L      S+N   
Sbjct: 254 EACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQL 313

Query: 108 LSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLAL---DLNSNQLA---------GP 155
                            C L         + S+    L   +L+  +             
Sbjct: 314 PQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKE 373

Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPEL------FL 209
           + +    N   L  + L +  +  +      +    TL   D      L +L        
Sbjct: 374 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433

Query: 210 NLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVIL 269
           ++       + +L L    LT  L  + +   +  L L  N+L  + P        L +L
Sbjct: 434 SVLKMEYADVRVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 270 NLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITE 329
               N L               +            +G+  L +L+ L L  N L+     
Sbjct: 492 QASDNAL-------------ENV------------DGVANLPRLQELLLCNNRLQQSAAI 526

Query: 330 SHVSNLSKLKYMDFSFNSLA 349
             + +  +L  ++   NSL 
Sbjct: 527 QPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 44/331 (13%), Positives = 92/331 (27%), Gaps = 69/331 (20%)

Query: 93  LYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQL 152
           +  +    +     +L  M     L++   +  G +  ++ WL  + +  L   L  +  
Sbjct: 259 VCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQH-- 316

Query: 153 AGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLS 212
                   ++   + +   L  ++     +       L    L     T  L     +  
Sbjct: 317 ---TFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCK 372

Query: 213 GCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD 272
              +   E  K     +   +  +      +E   + + L    P +          +L 
Sbjct: 373 ELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-----DLR 426

Query: 273 GNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHV 332
              L  +      +  +  L ++   L  TV   L +L  +  LDL  N L  +     +
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRAL--PPAL 482

Query: 333 SNLSKLKYMDFSFNSLALNFSFGWLPPFQLESI-GLLHCKLGPHFPKWLQSQKNYYFLDI 391
           + L  L+ +  S N               LE++ G+ +                      
Sbjct: 483 AALRCLEVLQASDN--------------ALENVDGVANL--------------------- 507

Query: 392 SDTEISDAVPSWFWDLSPNLYYLNLSHNHLE 422
                            P L  L L +N L+
Sbjct: 508 -----------------PRLQELLLCNNRLQ 521

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 56/280 (20%), Positives = 102/280 (36%), Gaps = 41/280 (14%)

Query: 84  ITSLASLRDLYLASSTLLSINRPSLSSM--NSSTSLTLLDLSSCGLSNSAYHWLFK---- 137
            +    +  L L+ + L SI+   L     N+  S+T L+LS   L       L +    
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 138 ISSNLLALDLNSNQL----AGPIPDYAFSNMTALQHLNLSLNQIS-----AISKSFGNM- 187
           I +N+ +L+L+ N L    +  +     +    +  L+L  N  S        ++F N+ 
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 188 CGLKTLHLFDNNLTGQ-LPELFLNLSGCSKNSLEILKLGGNKLTGS-LPDITEF-----S 240
             + +L+L  N+L  +   EL   L+     ++  L L GN L      ++ +F     +
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPA-NVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 241 SLQELHLFDNKLDGSFPEKF-----RKPSPLVILNLDGNQLWGS-----LPDLSVFPFLT 290
           S+  L L  N L      +        P+ +V LNL  N L G               L 
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 291 RLDVSDSRLNGT-------VSEGLGRLSKLEFLDLFGNSL 323
            + +    +          +      + K+  +D  G  +
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 26/191 (13%)

Query: 112 NSSTSLTLLDLSSCGLSNSAYHWLFK----ISSNLLALDLNSNQL----AGPIPDYAFSN 163
               ++  L+L    L++     L K    I +++ +LDL++N L       +     S 
Sbjct: 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223

Query: 164 MTALQHLNLSLNQIS-----AISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSG--CSK 216
              +  LNL LN +       +     ++  L+T++L  + +     E    L     + 
Sbjct: 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNI 283

Query: 217 NSLEILKLGGNKLTGS-LPDITEF-----SSLQELHLFDNKL-----DGSFPEKFRKPSP 265
             + ++   G ++  S    I+              L +  L       +  E    P  
Sbjct: 284 QKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDE 343

Query: 266 LVILNLDGNQL 276
           L         L
Sbjct: 344 LRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 47/280 (16%), Positives = 95/280 (33%), Gaps = 66/280 (23%)

Query: 135 LFKISSNLLALDLNSNQL----AGPIPDYAFSNMTALQHLNLSLNQIS-----AISKSF- 184
              I   + +LDL+ N L       +     +   ++  LNLS N +       + +   
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 185 GNMCGLKTLHLFDNNLTGQ----LPELF---------LNLSGCS---------------- 215
                + +L+L  N L+ +    L +           L+L                    
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 216 KNSLEILKLGGNKLTG-SLPDITEF-----SSLQELHLFDNKLDGSFPEKF-----RKPS 264
             S+  L L GN L   S  ++ +      +++  L+L  N L      +        P+
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPA 196

Query: 265 PLVILNLDGNQLWGS-LPDL-----SVFPFLTRLDVSDSRLNGT----VSEGLGRLSKLE 314
            +  L+L  N L      +L     S+   +  L++  + L+G     +      L  L+
Sbjct: 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256

Query: 315 FLDLFGNSLEGMITE------SHVSNLSKLKYMDFSFNSL 348
            + L  + ++ M  E      +   N+ K+  +D +   +
Sbjct: 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 11/113 (9%)

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQ 203
           L LN N+L     D  F  +  L  L L  NQ++ I   +F     ++ L L +N +  +
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-E 92

Query: 204 LPE-LFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLD 253
           +   +FL L       L+ L L  N+++  +        +SL  L+L  N  +
Sbjct: 93  ISNKMFLGLH-----QLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFN 139

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 7/114 (6%)

Query: 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSL 174
              T L L+   L   +   LF    +L+ L+L  NQL G I   AF   + +Q L L  
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGE 87

Query: 175 NQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGN 227
           N+I  I +K F  +  LKTL+L+DN ++  +P  F +L+     SL  L L  N
Sbjct: 88  NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-----SLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 11/109 (10%)

Query: 220 EILKLGGNKLTGSLPDITEFSS---LQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQL 276
             L L  N+L   +     F     L +L L  N+L G  P  F   S +  L L  N++
Sbjct: 32  TELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90

Query: 277 WGSLPDLSVF---PFLTRLDVSDSRLNGTVSEG-LGRLSKLEFLDLFGN 321
              + +  +F     L  L++ D++++  V  G    L+ L  L+L  N
Sbjct: 91  -KEISN-KMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 79/558 (14%), Positives = 161/558 (28%), Gaps = 140/558 (25%)

Query: 12  CRQKEVELTMCRREQAELAMCRRKQVELTMYRREQVE------LAISPINSFIL------ 59
            RQ  +   M   ++  L    +   +  + R +         L + P  + ++      
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 60  -KLMMALSKNSQNAIITVFNTCI--VTITSLASLRDLYLASSTLLSINRPSLSSMNSSTS 116
            K  +AL       +    +  I  + + +  S   +      LL    P+ +S +  +S
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 117 LTLLDLSSC--GLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSL 174
              L + S    L        ++    LL L                         N+  
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENC--LLVLL------------------------NV-- 253

Query: 175 NQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKN--SLEILKLGGNKLTGS 232
            Q +    +F   C  K L      LT +  ++   LS  +    SL+   +        
Sbjct: 254 -QNAKAWNAFNLSC--KIL------LTTRFKQVTDFLSAATTTHISLDHHSMT------- 297

Query: 233 LPDITEFSSLQELHLFDNKLDGSF---PEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFL 289
                  +  +   L    LD      P +    +P  +     + +  S+ D      L
Sbjct: 298 ------LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-----SIIAESIRD-----GL 341

Query: 290 TRLD----VSDSRLNGTVSEGLGRLSKLEFLDLFGNSL----EGM-ITESHVSNL-SKLK 339
              D    V+  +L   +   L  L   E+  +F + L        I    +S +   + 
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 340 Y------MDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQK---NYYFLD 390
                  ++       +           + SI  ++ +L           +   ++Y   
Sbjct: 401 KSDVMVVVNKLHKYSLVE---KQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHY--- 453

Query: 391 ISDTEISDAVPSWFWDLSP----NLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDF- 445
                I     S   DL P      +Y ++ H HL+   ++       +  + L   DF 
Sbjct: 454 ----NIPKTFDS--DDLIPPYLDQYFYSHIGH-HLKN--IEHPERMTLFRMVFL---DFR 501

Query: 446 --------EGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYL-DVSDNLLSGELP 496
                   +       G++ +       +   I   C    +Y   +  + D L   E  
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---CDNDPKYERLVNAILDFLPKIE-- 556

Query: 497 DCLLRWQALAVLNLANNN 514
           + L+  +   +L +A   
Sbjct: 557 ENLICSKYTDLLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 9e-05
 Identities = 60/419 (14%), Positives = 131/419 (31%), Gaps = 124/419 (29%)

Query: 255 SFPEKFRKPSPLVILNLDG-NQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKL 313
               + R+PS +  + ++  ++L+    D  VF    + +VS  +    + + L  L   
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYN---DNQVFA---KYNVSRLQPYLKLRQALLELRPA 150

Query: 314 EFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFG--WLPPFQLESIGLLHCK 371
           + +      ++G++  S  + ++    + +          F   WL      ++   +  
Sbjct: 151 KNV-----LIDGVLG-SGKTWVALDVCLSYKVQC---KMDFKIFWL------NLKNCNS- 194

Query: 372 LGPHFPKWL--QSQKNYYFLDISDTEISD---AVPSWFWDLSPNLYYLNLSHNHLEG-TV 425
                P+ +    QK  Y +D + T  SD    +      +   L  L  S  +     V
Sbjct: 195 -----PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249

Query: 426 LDLSLNYAGYPGIDLSS----NDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYF 481
           L            ++ +    N F      +   +T+              L + +  + 
Sbjct: 250 LL-----------NVQNAKAWNAFNLSCKIL---LTTRFKQV------TDFLSAATTTHI 289

Query: 482 SYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKI-- 539
           S    S  L   E+   LL++     L+                ++P  +   N  ++  
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKY-----LDCR------------PQDLPREVLTTNPRRLSI 332

Query: 540 IDA---------------GDNKFSGTIPAWIGDTLP---------KLAILSLRSNQFHGS 575
           I                   +K +  I + + + L          +L++    ++     
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAH----- 386

Query: 576 IPRN-LCRL---SKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTIT--HIYVYYR 628
           IP   L  +        +   +N       K      ++VEK    STI+   IY+  +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVN-------KLHK--YSLVEKQPKESTISIPSIYLELK 436

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 11/119 (9%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLF 196
           I  ++  L L+ NQ    +P    SN   L  ++LS N+IS +S  SF NM  L TL L 
Sbjct: 29  IPRDVTELYLDGNQFTL-VPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKLD 253
            N L    P  F  L      SL +L L GN ++  +P+    + S+L  L +  N L 
Sbjct: 87  YNRLRCIPPRTFDGL-----KSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 11/115 (9%)

Query: 115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSL 174
             +T L L     +            +L  +DL++N+++  + + +FSNMT L  L LS 
Sbjct: 31  RDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRIST-LSNQSFSNMTQLLTLILSY 87

Query: 175 NQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPE-LFLNLSGCSKNSLEILKLGGN 227
           N++  I  ++F  +  L+ L L  N+++  +PE  F +LS     +L  L +G N
Sbjct: 88  NRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLS-----ALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 7/106 (6%)

Query: 220 EILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGS 279
             L L GN+ T    +++ +  L  + L +N++     + F   + L+ L L  N+L   
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RC 92

Query: 280 LPDLSVF---PFLTRLDVSDSRLNGTVSEGL-GRLSKLEFLDLFGN 321
           +P    F     L  L +  + ++  V EG    LS L  L +  N
Sbjct: 93  IPP-RTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 8/113 (7%)

Query: 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNN 199
           + +  L L++ +      +   +    L+ L+L    + ++S +   +  LK L L +N 
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-NLPKLPKLKKLELSENR 82

Query: 200 LTGQLPELFLNLSGCSKNSLEILKLGGNKLT--GSLPDITEFSSLQELHLFDN 250
           + G L  L   L      +L  L L GNKL    +L  + +   L+ L LF+ 
Sbjct: 83  IFGGLDMLAEKLP-----NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 10/152 (6%)

Query: 171 NLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLT 230
            + + +   +         ++ L L  +N      ++    +      LE L L    L 
Sbjct: 7   GMDMKRRIHLELRNRTPAAVRELVL--DNCKSNDGKIEGLTAEFVN--LEFLSLINVGLI 62

Query: 231 GSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQL--WGSLPDLSVFPF 288
            S+ ++ +   L++L L +N++ G       K   L  LNL GN+L    +L  L     
Sbjct: 63  -SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121

Query: 289 LTRLDVSD---SRLNGTVSEGLGRLSKLEFLD 317
           L  LD+ +   + LN         L +L +LD
Sbjct: 122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 8/116 (6%)

Query: 116 SLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLN 175
           ++  L L +C  ++     L     NL  L L +  L   + +     +  L+ L LS N
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSN--LPKLPKLKKLELSEN 81

Query: 176 QISAISKSFGNMC-GLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLT 230
           +I             L  L+L  N L   +  L   L       L+ L L   ++T
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTL-EPLKKLEC--LKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 2/113 (1%)

Query: 238 EFSSLQELHLFDNKLD-GSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSD 296
             ++++EL L + K + G       +   L  L+L    L  S+ +L   P L +L++S+
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-ISVSNLPKLPKLKKLELSE 80

Query: 297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA 349
           +R+ G +     +L  L  L+L GN L+ + T   +  L  LK +D     + 
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 14/126 (11%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLF 196
           I +    LDL +N L   +P+  F  +T+L  L L  N++ ++    F  +  L  L+L 
Sbjct: 26  IPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDNKL-- 252
            N L      +F  L+      L+ L L  N+L  SLPD    + + L++L L+ N+L  
Sbjct: 85  TNQLQSLPNGVFDKLT-----QLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS 138

Query: 253 --DGSF 256
             DG F
Sbjct: 139 VPDGVF 144

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 8/121 (6%)

Query: 84  ITSLASLRDLYLASSTLLSINRPSLSSM-----NSSTSLTLLDLSSCGLSNSAYHWLFKI 138
           + SL +     L S T L +    L S+     N  TSLT L+LS+  L  S  + +F  
Sbjct: 40  LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDK 98

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFD 197
            + L  L LN+NQL   +PD  F  +T L+ L L  NQ+ ++    F  +  L+ + L D
Sbjct: 99  LTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157

Query: 198 N 198
           N
Sbjct: 158 N 158

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 24/150 (16%)

Query: 158 DYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSK- 216
           D   S + A +HL LS N I  IS S   M  L+ L L  N +          +      
Sbjct: 41  DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK--------KIENLDAV 91

Query: 217 -NSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKL-DGSFPEKFRKPSPLVILNLDGN 274
            ++LE L +  N++  SL  I +  +L+ L++ +NK+ +    +K      L  L L GN
Sbjct: 92  ADTLEELWISYNQIA-SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

Query: 275 QLWGSLPD-----------LSVFPFLTRLD 293
            L+    +           +   P L +LD
Sbjct: 151 PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 26/153 (16%), Positives = 54/153 (35%), Gaps = 8/153 (5%)

Query: 210 NLSGCSKNSLEILKLGG--NKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLV 267
                     E ++L G    +      ++   + + L L  N +             L 
Sbjct: 16  ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKISSLSGMENLR 73

Query: 268 ILNLDGNQLWGSLPDL-SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM 326
           IL+L  N +   + +L +V   L  L +S +++      G+ +L  L  L +  N +   
Sbjct: 74  ILSLGRNLI-KKIENLDAVADTLEELWISYNQI--ASLSGIEKLVNLRVLYMSNNKITNW 130

Query: 327 ITESHVSNLSKLKYMDFSFNSLALNFSFGWLPP 359
                ++ L KL+ +  + N L  ++       
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 19/182 (10%)

Query: 89  SLRDLYLASSTLLSINRPSLSSM--NSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALD 146
           SLR L LA   +  +    ++++  +   +L  ++L+SC L  +    L  +      L 
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132

Query: 147 LNSNQL----AGPIPDYAFSNMTALQHLNLSLNQIS-----AISKSFGNMCGLKTLHLFD 197
           L  N L       + D    +   +  L LS N ++      + +       +  L L  
Sbjct: 133 LQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH 192

Query: 198 NNLTGQ-LPELFLNLSGCSKNSLEILKLGGNKLTGS-LPDITEF----SSLQELHLFDNK 251
             L  + L  L   L       L+ L +  N    +    +        SL+ LHL+ N+
Sbjct: 193 TGLGDEGLELLAAQLDRNR--QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250

Query: 252 LD 253
           L 
Sbjct: 251 LS 252

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 42/236 (17%), Positives = 73/236 (30%), Gaps = 49/236 (20%)

Query: 115 TSLTLLDLSSCGLSNSAYHWLFKI----SSNLLALDLNSNQL----AGPIPDYAFSNMTA 166
           +SL  L+L+   ++      +  +       L  ++L S QL       +          
Sbjct: 72  SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL----LPVFLR 127

Query: 167 LQHLNLSLNQIS-----AISKSF-GNMCGLKTLHLFDNNLTGQLPELFLNLSGC------ 214
            + L L LN +       +      + C + TL L +N LT          +G       
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTA---------AGVAVLMEG 178

Query: 215 --SKNSLEILKLGGNKLT----GSLPD-ITEFSSLQELHLFDNKLDGS----FPEKFRKP 263
                S+  L L    L       L   +     LQEL++  N    +         R+ 
Sbjct: 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREH 238

Query: 264 SPLVILNLDGNQLWGS-----LPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLE 314
             L +L+L  N+L                   R+ VS +            LS+++
Sbjct: 239 PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQ 294

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.8 bits (127), Expect = 6e-08
 Identities = 43/137 (31%), Positives = 57/137 (41%), Gaps = 16/137 (11%)

Query: 191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLF 248
           + L+L DN +T   P +F +L      +L+ L LG N+L  +LP       + L  L L 
Sbjct: 43  QILYLHDNQITKLEPGVFDSLI-----NLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96

Query: 249 DNKLDGSFPEK-FRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGL 307
            N+L    P   F +   L  L +  N+L   LP       LT L       N   S   
Sbjct: 97  TNQLT-VLPSAVFDRLVHLKELFMCCNKL-TELPR--GIERLTHLTHLALDQNQLKSIPH 152

Query: 308 G---RLSKLEFLDLFGN 321
           G   RLS L    LFGN
Sbjct: 153 GAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 12/137 (8%)

Query: 96  ASSTLLSINRPSLSSM-----NSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSN 150
            ++ +L ++   ++ +     +S  +L  L L S  L  +    +F   + L  LDL +N
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTN 98

Query: 151 QLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLN 210
           QL   +P   F  +  L+ L +  N+++ + +    +  L  L L  N L       F  
Sbjct: 99  QLTV-LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157

Query: 211 LSGCSKNSLEILKLGGN 227
           LS     SL    L GN
Sbjct: 158 LS-----SLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 243 QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGT 302
           Q L+L DN++    P  F     L  L L  NQL G+LP   VF  LT+L V D   N  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPV-GVFDSLTQLTVLDLGTNQL 100

Query: 303 VSEGLG---RLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSL 348
                    RL  L+ L +  N L  +     +  L+ L ++    N L
Sbjct: 101 TVLPSAVFDRLVHLKELFMCCNKLTEL--PRGIERLTHLTHLALDQNQL 147

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 12/117 (10%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF 196
           I S+   L+L SN+L   +P   F  +T L  L+LS NQI ++    F  +  L  L+L 
Sbjct: 26  IPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84

Query: 197 DNNLTGQLPE-LFLNLSGCSKNSLEILKLGGNKLTGSLPD--ITEFSSLQELHLFDN 250
           +N L   LP  +F  L+      L+ L L  N+L  S+PD      +SLQ++ L  N
Sbjct: 85  ENKLQ-SLPNGVFDKLT-----QLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 45/265 (16%), Positives = 83/265 (31%), Gaps = 36/265 (13%)

Query: 82  VTITSLASLRDLYLASSTLLSINRPSLSSMNSS-TSLTLLDLSSCGLSNSAYHWLFKISS 140
           V +       D  L          P + +M+SS T L  + L    +++     + K   
Sbjct: 71  VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK 130

Query: 141 NLLALDLNS-NQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNN 199
           N   L L+S    +        +    L+ L+L  + +  +S        L        +
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH-----WLSHFPDTYTS 185

Query: 200 LTGQLPELFLNLSGCSKN--------------SLEILKL-------GGNKLTGSLPDITE 238
           L        LN+S  +                +L+ LKL           L    P + E
Sbjct: 186 LVS------LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE 239

Query: 239 FSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDL-SVFPFLTRLDVSDS 297
             +          +             L  L+   + +   LP + SV   LT L++S +
Sbjct: 240 LGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299

Query: 298 RLNGT-VSEGLGRLSKLEFLDLFGN 321
            +    + + L +  KL+ L +   
Sbjct: 300 TVQSYDLVKLLCQCPKLQRLWVLDY 324

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 51/321 (15%), Positives = 95/321 (29%), Gaps = 41/321 (12%)

Query: 84  ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLL 143
             + A+L +    S            ++     L  L LS  G +      LF  ++ + 
Sbjct: 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI--LFPFAAQIR 296

Query: 144 ALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQIS--AISKSFGNMCGLKTLHLFDNNLT 201
            LDL    L              L+ L    N I    +         LK L +      
Sbjct: 297 KLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADE 355

Query: 202 GQLPELFLNLS---------GCSKNSLEILKLGGNKLT--------GSLPDITEFSSL-- 242
             + +    +S         GC +  LE + +  + +T          L ++ +F  +  
Sbjct: 356 QGMEDEEGLVSQRGLIALAQGCQE--LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413

Query: 243 -QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF------PFLTRLDVS 295
            +E  + D  LD            L        Q  G L DL +       P +  + + 
Sbjct: 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ--GGLTDLGLSYIGQYSPNVRWMLLG 471

Query: 296 DSRLNGT-VSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSF 354
               +   + E       L+ L++ G         + V+ L  L+Y+       ++    
Sbjct: 472 YVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT-GQ 530

Query: 355 GWL----PPFQLESIGLLHCK 371
             +    P + +E I      
Sbjct: 531 DLMQMARPYWNIELIPSRRVP 551

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.0 bits (114), Expect = 7e-06
 Identities = 49/342 (14%), Positives = 110/342 (32%), Gaps = 40/342 (11%)

Query: 89  SLRDLYLASSTLLSINRPSLSSM-NSSTSLTLLDLSSCG---LSNSAYHWLFKISSNLLA 144
            ++ L +  S+    +   L  +   +TSL +L+        +S      + +   +L++
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLN-LSLNQISAISKSFGNMCGLKTLHLFDNNLTGQ 203
           + +   ++   +    F     L+     SLN+   + + + N+   + L     +  G 
Sbjct: 225 VKVGDFEILELVG--FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP 282

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLT--GSLPDITEFSSLQELHLFDNKLDGSFPEKFR 261
             E+ +     +   +  L L    L        I +  +L+ L   +   D       +
Sbjct: 283 N-EMPILFPFAA--QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQ 339

Query: 262 KPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGN 321
               L  L ++       + D           VS   L   +++G     +LE++ ++ +
Sbjct: 340 YCKQLKRLRIERGADEQGMEDEEGL-------VSQRGLI-ALAQGC---QELEYMAVYVS 388

Query: 322 SLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQ 381
            +     ES  + L  L      F  + L+             +  L           L 
Sbjct: 389 DITNESLESIGTYLKNLC----DFRLVLLDREERITDLPLDNGVRSL-----------LI 433

Query: 382 SQKNYYFLDISD--TEISDAVPSWFWDLSPNLYYLNLSHNHL 421
             K             ++D   S+    SPN+ ++ L +   
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE 475

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 59/442 (13%), Positives = 119/442 (26%), Gaps = 64/442 (14%)

Query: 43  RREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLS 102
           R     L       ++   +  +S N +      F   IV+   L  L          L 
Sbjct: 85  RAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144

Query: 103 INRPSLSSMNS-------STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAG- 154
           +++ S  + +           +  L +     S     WL +++ +  +L++ +  +   
Sbjct: 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF 204

Query: 155 -PIPDYA----FSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFL 209
             I          N  +L  + +   +I  +   F     L+       N    +PE ++
Sbjct: 205 AKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYM 264

Query: 210 NLSGCSK---------------------NSLEILKLGGNKLT--GSLPDITEFSSLQELH 246
           NL    K                       +  L L    L        I +  +L+ L 
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324

Query: 247 LFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVF-------------PFLTRLD 293
             +   D       +    L  L ++       + D                   L  + 
Sbjct: 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384

Query: 294 VSDSRLN----GTVSEGLGRLSKLEFLDLFGNSLEGMIT-----ESHVSNLSKLKYMDFS 344
           V  S +      ++   L  L     + L        +       S +    KL+   F 
Sbjct: 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444

Query: 345 FNSLALN----FSFGWLPPFQLESIGLLHCKLG-PHFPKWLQSQKNYYFLDISDTEISDA 399
                L        G   P  +  + L +         ++ +   N   L++     S+ 
Sbjct: 445 LRQGGLTDLGLSYIGQYSP-NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503

Query: 400 VPSWFWDLSPNLYYLNLSHNHL 421
             +      P+L YL +     
Sbjct: 504 AIAAAVTKLPSLRYLWVQGYRA 525

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 35/162 (21%)

Query: 161 FSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLE 220
           ++N    + L+L   +I  I                  NL   L +             +
Sbjct: 15  YTNAVRDRELDLRGYKIPVIE-----------------NLGATLDQ------------FD 45

Query: 221 ILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQL--WG 278
            +    N++   L        L+ L + +N++        +    L  L L  N L   G
Sbjct: 46  AIDFSDNEIR-KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 104

Query: 279 SLPDLSVFPFLTRLDVSD---SRLNGTVSEGLGRLSKLEFLD 317
            L  L+    LT L +     +         + ++ ++  LD
Sbjct: 105 DLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 10/123 (8%)

Query: 81  IVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISS 140
               T+    R+L L    +  I   +L +         +D S   +        F +  
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPVIE--NLGATL--DQFDAIDFSDNEIRKLDG---FPLLR 64

Query: 141 NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS--KSFGNMCGLKTLHLFDN 198
            L  L +N+N++   I +     +  L  L L+ N +  +       ++  L  L +  N
Sbjct: 65  RLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

Query: 199 NLT 201
            +T
Sbjct: 124 PVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 238 EFSSLQELHLFDNKLD-GSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSD 296
             S ++EL L +++ + G       +   L  L+     L  S+ +L     L +L++SD
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSIANLPKLNKLKKLELSD 73

Query: 297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFN 346
           +R++G +     +   L  L+L GN ++ + T   +  L  LK +D    
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 16/130 (12%)

Query: 203 QLPELFLNLSGCSK----------NSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKL 252
            + EL L+ S  ++            LE L      LT S+ ++ + + L++L L DN++
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSDNRV 76

Query: 253 DGSFPEKFRKPSPLVILNLDGNQL--WGSLPDLSVFPFLTRLDVSD---SRLNGTVSEGL 307
            G       K   L  LNL GN++    ++  L     L  LD+ +   + LN       
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF 136

Query: 308 GRLSKLEFLD 317
             L +L +LD
Sbjct: 137 KLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 8/119 (6%)

Query: 113 SSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNL 172
           + + +  L L +   +      L      L  L   +  L   I +     +  L+ L L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-IAN--LPKLNKLKKLEL 71

Query: 173 SLNQISAISKSFGNMC-GLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLT 230
           S N++S   +     C  L  L+L  N +          L       L+ L L   ++T
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLEN--LKSLDLFNCEVT 126

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 24/178 (13%), Positives = 55/178 (30%), Gaps = 16/178 (8%)

Query: 41  MYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTL 100
               +  E  IS I    L  ++       N  I   N   +      +L+ L + S  L
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGL 205

Query: 101 LSINRPSLSSMNSSTSLTLLDLS--------SCGLSNSAYHWLFKISSNLLALDLNSNQL 152
                  +   +   +L  L L            ++     +      NL  L +   + 
Sbjct: 206 PDSVVEDILGSDLP-NLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE 264

Query: 153 AGPIPDY--AFSNMTALQHLNLSLNQIS-----AISKSFGNMCGLKTLHLFDNNLTGQ 203
              + +       +  L+ +++S   ++      +      +  LK +++  N L+ +
Sbjct: 265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 3e-05
 Identities = 35/211 (16%), Positives = 73/211 (34%), Gaps = 21/211 (9%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSL-TLLDLSSCGLSNSAYHWLFKISS-NL 142
              A    L+             +  ++ S  L  +  L++  +  +    + K    NL
Sbjct: 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNL 195

Query: 143 LALDLNSNQLAGP-IPDYAFSNMTALQHLNLSLNQISAISK----------SFGNMCGLK 191
            +L++ S  L    + D   S++  L+ L L +                  S      LK
Sbjct: 196 KSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK 255

Query: 192 TLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS-----LPDITEFSSLQELH 246
            L + D      + E+FL         LE + +    LT       L  + +   L+ ++
Sbjct: 256 WLGIVDAEEQNVVVEMFLESDILP--QLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313

Query: 247 LFDNKLDGSFPEKFRKPSPLVILNLDGNQLW 277
           +  N L     ++ +K  P + +++  +Q +
Sbjct: 314 MKYNYLSDEMKKELQKSLP-MKIDVSDSQEY 343

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 37/158 (23%), Positives = 53/158 (33%), Gaps = 39/158 (24%)

Query: 144 ALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQ 203
           ALDL   +      D           LN      + +     N+  L +L+L +N L   
Sbjct: 131 ALDLKGLRS-----DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYR- 184

Query: 204 LPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKP 263
             +   ++   + N L+IL L GN+L        E   ++ L                  
Sbjct: 185 -LDDMSSIVQKAPN-LKILNLSGNELK----SERELDKIKGL------------------ 220

Query: 264 SPLVILNLDGNQLWGSLPD--------LSVFPFLTRLD 293
             L  L LDGN L  +  D           FP L RLD
Sbjct: 221 -KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 141 NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDN 198
            L  LDL++NQL   +P   F  +T L  L+L+ NQ+ +I + +F N+  L  + L +N
Sbjct: 55  QLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF 196
           I +    L L  NQ+   +    F  +T L  L+L  NQ++ + +  F  +  L  L L 
Sbjct: 28  IPTTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGN 227
           DN L       F NL      SL  + L  N
Sbjct: 87  DNQLKSIPRGAFDNLK-----SLTHIWLLNN 112

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 45/257 (17%), Positives = 97/257 (37%), Gaps = 36/257 (14%)

Query: 32  CRR-KQVELTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASL 90
           C+R  ++       + ++L    ++  +   +++    +     +  +  +    S   +
Sbjct: 36  CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV 95

Query: 91  RDLYLASSTLLSINRPSLSSM-NSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDL-N 148
           + + L++S    I   +L  + +  + L  L L    LS+   + L K +SNL+ L+L  
Sbjct: 96  QHMDLSNSV---IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSG 151

Query: 149 SNQLAGPIPDYAFSNMTALQHLNLS-LNQIS--AISKSFGNMC-GLKTLHLFDNN----- 199
            +  +        S+ + L  LNLS     +   +  +  ++   +  L+L         
Sbjct: 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK 211

Query: 200 -----LTGQLPEL-FLNLSGCSK------------NSLEILKLGG-NKLT-GSLPDITEF 239
                L  + P L  L+LS                N L+ L L     +   +L ++ E 
Sbjct: 212 SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271

Query: 240 SSLQELHLFDNKLDGSF 256
            +L+ L +F    DG+ 
Sbjct: 272 PTLKTLQVFGIVPDGTL 288

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 11/149 (7%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSC--GLSNSAYHWLFKISSNL 142
           +S + L +L L+     +     ++  + S ++T L+LS     L  S    L +   NL
Sbjct: 165 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 224

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLS-LNQISAIS-KSFGNMCGLKTLHLFD--- 197
           + LDL+ + +        F  +  LQHL+LS    I   +    G +  LKTL +F    
Sbjct: 225 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVP 284

Query: 198 ----NNLTGQLPELFLNLSGCSKNSLEIL 222
                 L   LP L +N S  +  +   +
Sbjct: 285 DGTLQLLKEALPHLQINCSHFTTIARPTI 313

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 141 NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDN 198
           NL  L  NSN+L   IP   F  +T L  L+L+ N + +I + +F N+  L  ++L++N
Sbjct: 58  NLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS-FGNMCGLKTLHLF 196
           I ++   L LN+NQ+   +    F ++  LQ L  + N+++AI    F  +  L  L L 
Sbjct: 31  IPTDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89

Query: 197 DNNL 200
           DN+L
Sbjct: 90  DNHL 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	637
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.75
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.51
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.31
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.02
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.94
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.71
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.79
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.78
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.14

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.9e-63  Score=553.52  Aligned_cols=524  Identities=28%  Similarity=0.404  Sum_probs=430.6

Q ss_pred             hhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhH---HHhhcCCCcEEECCCCCCCCCCCch
Q 042944           83 TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHW---LFKISSNLLALDLNSNQLAGPIPDY  159 (637)
Q Consensus        83 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~---~~~~~~~L~~L~L~~n~l~~~l~~~  159 (637)
                      .+..+++|++|++++|.+.+..+  ...+.++++|++|++++|.+.+..+..   +..+ ++|++|++++|.+.+.++  
T Consensus       121 ~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--  195 (768)
T 3rgz_A          121 SLGSCSGLKFLNVSSNTLDFPGK--VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC-GELKHLAISGNKISGDVD--  195 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEECCSS--CCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC-TTCCEEECCSSEEESCCB--
T ss_pred             HHhCCCCCCEEECcCCccCCcCC--HHHhccCCCCCEEECCCCccCCcCChhhhhhccC-CCCCEEECCCCcccccCC--
Confidence            35566666666666666554432  112255667777777777776555544   3333 777777777777763333  


Q ss_pred             hccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccC
Q 042944          160 AFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEF  239 (637)
Q Consensus       160 ~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~  239 (637)
                       +..+++|++|++++|++...+..++++++|++|++++|.+.+..|..+..++     +|++|++++|.+....+.. .+
T Consensus       196 -~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-----~L~~L~Ls~n~l~~~~~~~-~l  268 (768)
T 3rgz_A          196 -VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCT-----ELKLLNISSNQFVGPIPPL-PL  268 (768)
T ss_dssp             -CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCS-----SCCEEECCSSCCEESCCCC-CC
T ss_pred             -cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCC-----CCCEEECCCCcccCccCcc-cc
Confidence             3678888888888888877433488888899999988888888888888888     8999999988887555544 77


Q ss_pred             CCccEEEccCCcCCCCCCCcCCCC-CCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhh-hcCCCCCCEE
Q 042944          240 SSLQELHLFDNKLDGSFPEKFRKP-SPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEG-LGRLSKLEFL  316 (637)
Q Consensus       240 ~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L  316 (637)
                      ++|++|++++|.+++..|..+... ++|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|.. +..+++|+.|
T Consensus       269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L  348 (768)
T 3rgz_A          269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL  348 (768)
T ss_dssp             TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEE
T ss_pred             CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEE
Confidence            889999999998887777777664 8899999999988765554 445888999999999887555544 8888999999


Q ss_pred             ecCCCcCCCccchhhhcCCC-CCcEEEccCCcccccccCCCCC--CCceeEEeccCCcCCCCccccccCCCCccEEEeeC
Q 042944          317 DLFGNSLEGMITESHVSNLS-KLKYMDFSFNSLALNFSFGWLP--PFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISD  393 (637)
Q Consensus       317 ~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  393 (637)
                      ++++|.+.+..+. .+.+++ +|++|++++|.+....+..+..  +++|++|++.+|.+.+..|.++..+++|++|++++
T Consensus       349 ~Ls~n~l~~~~p~-~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  427 (768)
T 3rgz_A          349 DLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF  427 (768)
T ss_dssp             ECCSSEEEECCCT-THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred             eCcCCccCccccH-HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence            9999988765555 455555 8999999999888766666655  78899999999999988899999999999999999


Q ss_pred             CCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcc
Q 042944          394 TEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPI  470 (637)
Q Consensus       394 n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~  470 (637)
                      |.+.+..+..+... ++|++|++++|.+++..+..+..+++|+.|++++|++.+..|..   +++|++|++++|++++.+
T Consensus       428 N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~  506 (768)
T 3rgz_A          428 NYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI  506 (768)
T ss_dssp             SEEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred             CcccCcccHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence            99998888887765 89999999999999999999999999999999999999887765   689999999999999887


Q ss_pred             cccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCcccc----------------------------
Q 042944          471 SSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTF----------------------------  522 (637)
Q Consensus       471 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----------------------------  522 (637)
                      |..... .++|++|++++|.+++.+|..+..+++|+.|++++|++++..|..                            
T Consensus       507 p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  585 (768)
T 3rgz_A          507 PKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK  585 (768)
T ss_dssp             CGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCT
T ss_pred             ChHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccc
Confidence            765543 399999999999999999999999999999999999998665543                            


Q ss_pred             ----------------------------------ccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEecc
Q 042944          523 ----------------------------------FVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLR  568 (637)
Q Consensus       523 ----------------------------------~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~  568 (637)
                                                        +.|.+|..+..+++|++||+++|.+++.+|..+. .+++|+.|+|+
T Consensus       586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~L~~L~Ls  664 (768)
T 3rgz_A          586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLG  664 (768)
T ss_dssp             TCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG-GCTTCCEEECC
T ss_pred             cccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh-ccccCCEEeCc
Confidence                                              2234566677889999999999999999999988 69999999999


Q ss_pred             CccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944          569 SNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH  622 (637)
Q Consensus       569 ~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~  622 (637)
                      +|++++.+|..+..+++|++||+++|++++.+|+.|..+++|++|++++|+++-
T Consensus       665 ~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             CCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence            999999999999999999999999999999999999999999999999999974

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.5e-59  Score=519.88  Aligned_cols=570  Identities=27%  Similarity=0.348  Sum_probs=456.8

Q ss_pred             HHHHhhccccceeeeeeccccccccccCc--------hhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCC
Q 042944           27 AELAMCRRKQVELTMYRREQVELAISPIN--------SFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASS   98 (637)
Q Consensus        27 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~   98 (637)
                      ...++|.|.|+.|...+...+...-..+.        .+..++.|++..+++.......    ..+..+++|++|+|++|
T Consensus        35 ~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~----~~~~~l~~L~~L~Ls~n  110 (768)
T 3rgz_A           35 SNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV----SGFKCSASLTSLDLSRN  110 (768)
T ss_dssp             TTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECC----CCCCCCTTCCEEECCSS
T ss_pred             CCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCc----hhhccCCCCCEEECCCC
Confidence            44579999999997434433333222221        1222344555555555544322    23778888888888888


Q ss_pred             CCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchh---ccCCCCCCEEEcCCC
Q 042944           99 TLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYA---FSNMTALQHLNLSLN  175 (637)
Q Consensus        99 ~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~---~~~l~~L~~L~L~~n  175 (637)
                      .+.+..+. ...++++++|++|++++|.+.+..+..+...+++|++|++++|.+++..+. .   +.++++|++|++++|
T Consensus       111 ~l~~~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~~~~l~~L~~L~Ls~n  188 (768)
T 3rgz_A          111 SLSGPVTT-LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV-GWVLSDGCGELKHLAISGN  188 (768)
T ss_dssp             EEEEEGGG-GGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH-HHHHTTCCTTCCEEECCSS
T ss_pred             cCCCcCCC-hHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh-hhhhhccCCCCCEEECCCC
Confidence            87764331 126777788888888888777655554423338888888888888744443 4   678888888888888


Q ss_pred             cccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC-CcccCCCccEEEccCCcCCC
Q 042944          176 QISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEFSSLQELHLFDNKLDG  254 (637)
Q Consensus       176 ~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~L~~L~l~~n~i~~  254 (637)
                      .+..... +..+++|++|++++|.+.+..|. ++.++     +|++|++++|.+....+ .+..+++|++|++++|.+.+
T Consensus       189 ~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~-----~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  261 (768)
T 3rgz_A          189 KISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCS-----ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG  261 (768)
T ss_dssp             EEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCC-----SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE
T ss_pred             cccccCC-cccCCcCCEEECcCCcCCCCCcc-cccCC-----CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC
Confidence            8776432 37788888888888888766666 77777     88888888888875433 57788888888888888876


Q ss_pred             CCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCC-CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhh
Q 042944          255 SFPEKFRKPSPLVILNLDGNQLWGSLPD-LSV-FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHV  332 (637)
Q Consensus       255 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~-~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~  332 (637)
                      ..+..  .+++|++|++++|.+.+..+. +.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.++...+
T Consensus       262 ~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l  339 (768)
T 3rgz_A          262 PIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTL  339 (768)
T ss_dssp             SCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHH
T ss_pred             ccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHH
Confidence            55544  778888888888888744443 444 58999999999999888888899999999999999998866777678


Q ss_pred             cCCCCCcEEEccCCcccccccCCCCCCC-ceeEEeccCCcCCCCccccccC--CCCccEEEeeCCCCCCccchhhhhcCC
Q 042944          333 SNLSKLKYMDFSFNSLALNFSFGWLPPF-QLESIGLLHCKLGPHFPKWLQS--QKNYYFLDISDTEISDAVPSWFWDLSP  409 (637)
Q Consensus       333 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~--~~~L~~L~l~~n~i~~~~~~~~~~~~~  409 (637)
                      .++++|++|++++|.+....+..+..+. +|+.|++++|.+.+..+..+..  +++|++|++++|.+.+..+..+... +
T Consensus       340 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l-~  418 (768)
T 3rgz_A          340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-S  418 (768)
T ss_dssp             TTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC-T
T ss_pred             hcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC-C
Confidence            8999999999999999877777777766 8999999999988777777766  7899999999999988888877765 8


Q ss_pred             CccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccccccccCCCccEEeC
Q 042944          410 NLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDV  486 (637)
Q Consensus       410 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  486 (637)
                      +|++|++++|.+++..+..+..+++|+.|++++|.+.+..|..   +++|++|++++|++++..+..... .++|++|++
T Consensus       419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L  497 (768)
T 3rgz_A          419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISL  497 (768)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEEC
T ss_pred             CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc-CCCCCEEEc
Confidence            9999999999999999999999999999999999999877764   678999999999999877765433 399999999


Q ss_pred             CCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh---------
Q 042944          487 SDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD---------  557 (637)
Q Consensus       487 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~---------  557 (637)
                      ++|.+++.+|..+..+++|+.|++++|+++        +.+|..+..+++|++|++++|.+++.+|..++.         
T Consensus       498 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--------~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~  569 (768)
T 3rgz_A          498 SNNRLTGEIPKWIGRLENLAILKLSNNSFS--------GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF  569 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCE--------EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred             cCCccCCcCChHHhcCCCCCEEECCCCccc--------CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence            999999999999999999999999999987        478888999999999999999999888876542         


Q ss_pred             ------------------------------------------------------------cCCCCcEEeccCccccccCC
Q 042944          558 ------------------------------------------------------------TLPKLAILSLRSNQFHGSIP  577 (637)
Q Consensus       558 ------------------------------------------------------------~l~~L~~L~L~~n~~~~~~~  577 (637)
                                                                                  .+++|+.|+|++|++++.+|
T Consensus       570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip  649 (768)
T 3rgz_A          570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP  649 (768)
T ss_dssp             TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred             cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence                                                                        24678999999999999999


Q ss_pred             ccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeE
Q 042944          578 RNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTIT  621 (637)
Q Consensus       578 ~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~  621 (637)
                      ..+..+++|+.|++++|.+++.+|+.|+.+++|+.|++++|+++
T Consensus       650 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence            99999999999999999999999999999999999999999997

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.2e-53  Score=472.25  Aligned_cols=546  Identities=20%  Similarity=0.170  Sum_probs=433.6

Q ss_pred             HHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHh
Q 042944           58 ILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFK  137 (637)
Q Consensus        58 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~  137 (637)
                      ..++.++++++.+....      ...|..+++|++|++++|.+.++.+   ..++++++|++|++++|.++...+..+..
T Consensus        25 ~~l~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~l~~~~~~~   95 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLP------AANFTRYSQLTSLDVGFNTISKLEP---ELCQKLPMLKVLNLQHNELSQLSDKTFAF   95 (680)
T ss_dssp             TTCSEEECCSSCCCCCC------GGGGGGGTTCSEEECCSSCCCCCCT---THHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCcEEECCCCCCCCcC------HHHHhCCCcCcEEECCCCccCccCH---HHHhcccCcCEEECCCCccCccChhhhcc
Confidence            34667888888765433      2347888999999999999988875   45566699999999999988665555666


Q ss_pred             hcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhh--cccC
Q 042944          138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLN--LSGC  214 (637)
Q Consensus       138 ~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~--l~~~  214 (637)
                      + ++|++|++++|.+. .++...|.++++|++|++++|.+..+ +..+.++++|++|++++|.+.+..+..+..  ++  
T Consensus        96 l-~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~--  171 (680)
T 1ziw_A           96 C-TNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS--  171 (680)
T ss_dssp             C-TTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC--
T ss_pred             C-CCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc--
Confidence            6 99999999999998 77765789999999999999998885 567888999999999999998777776653  35  


Q ss_pred             CCCcccEEEcCCCCCCCCcCC-ccc---------------------------CCCccEEEccCCcCCCCCCCcCCCCCC-
Q 042944          215 SKNSLEILKLGGNKLTGSLPD-ITE---------------------------FSSLQELHLFDNKLDGSFPEKFRKPSP-  265 (637)
Q Consensus       215 ~~~~L~~L~l~~n~~~~~~~~-~~~---------------------------~~~L~~L~l~~n~i~~~~~~~l~~l~~-  265 (637)
                         +|++|++++|.+....+. +..                           .++|++|++++|.+.+..+..+..++. 
T Consensus       172 ---~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~  248 (680)
T 1ziw_A          172 ---SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT  248 (680)
T ss_dssp             ---EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGS
T ss_pred             ---cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcC
Confidence               899999999988765443 222                           256888888888888777788877754 


Q ss_pred             -CcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCc--------cchhhhcCC
Q 042944          266 -LVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGM--------ITESHVSNL  335 (637)
Q Consensus       266 -L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--------~~~~~~~~l  335 (637)
                       |++|++++|.+....+. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.....        +....+..+
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l  328 (680)
T 1ziw_A          249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL  328 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred             CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence             99999999998876654 44589999999999999888888889999999999988754321        122357788


Q ss_pred             CCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCc--cccccC--CCCccEEEeeCCCCCCccchhhhhcCCCc
Q 042944          336 SKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHF--PKWLQS--QKNYYFLDISDTEISDAVPSWFWDLSPNL  411 (637)
Q Consensus       336 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~--~~~L~~L~l~~n~i~~~~~~~~~~~~~~L  411 (637)
                      ++|++|++++|.+....+..+..+++|++|++++|.+....  ...+..  .++|+.|++++|.+.+..+..+... ++|
T Consensus       329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L  407 (680)
T 1ziw_A          329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL-GHL  407 (680)
T ss_dssp             TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC-TTC
T ss_pred             CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC-CCC
Confidence            99999999999998888888888999999999998753321  122222  3689999999999988777666554 899


Q ss_pred             cEEECCCCcCCCccc-ccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccC--cccccccccCCCccEEe
Q 042944          412 YYLNLSHNHLEGTVL-DLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSG--PISSLCSISGEYFSYLD  485 (637)
Q Consensus       412 ~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~  485 (637)
                      ++|++++|.+++..+ ..+..+++|+.|++++|++.+..+..   +++|++|++++|.+..  ..+.. +...++|+.|+
T Consensus       408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~-~~~l~~L~~L~  486 (680)
T 1ziw_A          408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP-FQPLRNLTILD  486 (680)
T ss_dssp             CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT-TTTCTTCCEEE
T ss_pred             CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc-cccCCCCCEEE
Confidence            999999999976544 67888999999999999987665443   6789999999998863  23322 22338999999


Q ss_pred             CCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 042944          486 VSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAIL  565 (637)
Q Consensus       486 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L  565 (637)
                      +++|.+++..+..+..+++|++|++++|.+++.....+.+..+..+..+++|++|++++|.++ .+|...+..+++|+.|
T Consensus       487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L  565 (680)
T 1ziw_A          487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKII  565 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCccee
Confidence            999999987888899999999999999998854322111112234788999999999999998 8887766689999999


Q ss_pred             eccCccccccCCccccCCCCCcEeeCCCCccccccccccc-ccccceeeccCCCeeEE
Q 042944          566 SLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCIN-NLTAMVEKASSNSTITH  622 (637)
Q Consensus       566 ~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~-~l~~L~~l~l~~n~l~~  622 (637)
                      +|++|++++..+..|..+++|+.|++++|++++..|..|. .+++|+++++++|++..
T Consensus       566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c  623 (680)
T 1ziw_A          566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC  623 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred             ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence            9999999965666678999999999999999988887787 89999999999999854

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.1e-52  Score=462.01  Aligned_cols=517  Identities=23%  Similarity=0.246  Sum_probs=426.0

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCC
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTAL  167 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L  167 (637)
                      +++++|++++|.+.++.+   ..+.++++|++|++++|.+.+..+..+.++ ++|++|++++|.++ .++..+|+++++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~-~l~~~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPA---ANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELS-QLSDKTFAFCTNL   99 (680)
T ss_dssp             TTCSEEECCSSCCCCCCG---GGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             CCCcEEECCCCCCCCcCH---HHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCCccC-ccChhhhccCCCC
Confidence            689999999999999875   456777999999999999998888878777 99999999999998 8888789999999


Q ss_pred             CEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCC---cccCCCcc
Q 042944          168 QHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD---ITEFSSLQ  243 (637)
Q Consensus       168 ~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~~L~  243 (637)
                      ++|++++|++..++ ..|.++++|++|++++|.+.+..+..+..++     +|++|++++|.+....+.   ...+++|+
T Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~L~  174 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE-----NLQELLLSNNKIQALKSEELDIFANSSLK  174 (680)
T ss_dssp             SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT-----TCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred             CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccc-----cCCEEEccCCcccccCHHHhhcccccccc
Confidence            99999999999975 6799999999999999999988888888888     999999999999876553   23557999


Q ss_pred             EEEccCCcCCCCCCCcCCCC---------------------------CCCcEEEcCCCCCCCCCCCCCC-C--CCCCEEE
Q 042944          244 ELHLFDNKLDGSFPEKFRKP---------------------------SPLVILNLDGNQLWGSLPDLSV-F--PFLTRLD  293 (637)
Q Consensus       244 ~L~l~~n~i~~~~~~~l~~l---------------------------~~L~~L~l~~~~~~~~~~~~~~-~--~~L~~L~  293 (637)
                      +|++++|.+++..+..+..+                           ++|+.|++++|.+.+..+.... +  ++|++|+
T Consensus       175 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~  254 (680)
T 1ziw_A          175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD  254 (680)
T ss_dssp             EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred             EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence            99999999988777766554                           4567777777777665544333 4  4599999


Q ss_pred             ccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCccc---------ccccCCCCCCCceeE
Q 042944          294 VSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA---------LNFSFGWLPPFQLES  364 (637)
Q Consensus       294 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~---------~~~~~~~~~~~~L~~  364 (637)
                      +++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+.++++|+.|++++|...         ......+..+++|++
T Consensus       255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~  333 (680)
T 1ziw_A          255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS-HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH  333 (680)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT-TTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred             CCCCCcCccCcccccCcccccEeeCCCCccCccCh-hhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence            99999988777888899999999999999887444 47888999999999876443         222336778899999


Q ss_pred             EeccCCcCCCCccccccCCCCccEEEeeCCCCCCcc--chhhhhc-CCCccEEECCCCcCCCcccccccCCCCCCeEeCC
Q 042944          365 IGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAV--PSWFWDL-SPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLS  441 (637)
Q Consensus       365 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~--~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~  441 (637)
                      |++++|.+.+..+.++..+++|++|++++|.+....  ...+... .++|++|++++|.+++..+..+..+++|+.|+++
T Consensus       334 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  413 (680)
T 1ziw_A          334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG  413 (680)
T ss_dssp             EECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCC
Confidence            999999999888888999999999999998754322  2222221 2589999999999998888889999999999999


Q ss_pred             CCcCcCCCC----CCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCc--ccCchhhhccCCCcEEeccCccC
Q 042944          442 SNDFEGPVP----PVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLS--GELPDCLLRWQALAVLNLANNNF  515 (637)
Q Consensus       442 ~n~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l  515 (637)
                      +|.+.+..+    ..+++|++|++++|++.+..+..+. ..++|+.|++++|.+.  +..|..+..+++|+.|++++|.+
T Consensus       414 ~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l  492 (680)
T 1ziw_A          414 LNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI  492 (680)
T ss_dssp             SSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred             CCcCccccCcccccCcccccEEecCCCCcceeChhhhh-cCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence            999876544    2378999999999998766554433 3399999999999886  46788899999999999999998


Q ss_pred             CCCccccccccCCccccCCCCCcEEEcCCCcccccC-------ChhhhhcCCCCcEEeccCccccccCCccccCCCCCcE
Q 042944          516 SGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTI-------PAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQL  588 (637)
Q Consensus       516 ~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~-------~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  588 (637)
                      ++        ..+..+..+++|++|++++|.+++..       |...+..+++|+.|+|++|+++...+..|..+++|+.
T Consensus       493 ~~--------i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~  564 (680)
T 1ziw_A          493 AN--------INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI  564 (680)
T ss_dssp             CC--------CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             Cc--------CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence            83        22345788999999999999997321       1112447899999999999999433446899999999


Q ss_pred             eeCCCCcccccccccccccccceeeccCCCeeEEEE
Q 042944          589 LDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIY  624 (637)
Q Consensus       589 L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~  624 (637)
                      |++++|.+++..+..|..+++|++|++++|+|+.++
T Consensus       565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccC
Confidence            999999999777777899999999999999998775

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.1e-52  Score=458.21  Aligned_cols=491  Identities=19%  Similarity=0.167  Sum_probs=339.3

Q ss_pred             CccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEE
Q 042944          116 SLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLH  194 (637)
Q Consensus       116 ~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~  194 (637)
                      ++++|++++|.+++..+..+.++ ++|++|++++|.+. .+...+|.++++|++|++++|++..+ |..|+++++|++|+
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTC-TTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             cCcEEEccCCccCcCChhHhccC-ccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            34444444444444433334333 44444444444444 33222444444444444444444442 33444444444444


Q ss_pred             cCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC-cCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCc--EEEc
Q 042944          195 LFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS-LPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLV--ILNL  271 (637)
Q Consensus       195 l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~--~L~l  271 (637)
                      +++|.+.+..+..+..++     +|++|++++|.+... .+.+..+++|++|++++|.+++..+..+..+++|+  .+++
T Consensus       112 L~~n~i~~l~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l  186 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQK-----TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL  186 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCT-----TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred             ccccCcccCCcchhccCC-----cccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence            444444433334444444     444444444444431 12333344455555554444443344444444444  4444


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEccCCc--------------------------CCCCChhhhcCCC--CCCEEecCCCcC
Q 042944          272 DGNQLWGSLPDLSVFPFLTRLDVSDSR--------------------------LNGTVSEGLGRLS--KLEFLDLFGNSL  323 (637)
Q Consensus       272 ~~~~~~~~~~~~~~~~~L~~L~l~~n~--------------------------~~~~~~~~l~~l~--~L~~L~l~~n~~  323 (637)
                      ++|.+.+..+..+....|++|++++|.                          .....+..+..+.  +|+.|++++|.+
T Consensus       187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l  266 (606)
T 3t6q_A          187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF  266 (606)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred             CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence            444444444444444444444444442                          0111222233322  688999999998


Q ss_pred             CCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchh
Q 042944          324 EGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSW  403 (637)
Q Consensus       324 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~  403 (637)
                      .+. +...+..+++|++|++++|.++ ..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..
T Consensus       267 ~~~-~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  344 (606)
T 3t6q_A          267 FNI-SSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG  344 (606)
T ss_dssp             SSC-CTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred             Ccc-CHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence            874 4447888999999999999888 45556788889999999999988877888899999999999999888666555


Q ss_pred             hhhcCCCccEEECCCCcCCCcc--cccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccccccccC
Q 042944          404 FWDLSPNLYYLNLSHNHLEGTV--LDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISG  478 (637)
Q Consensus       404 ~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~  478 (637)
                      ....+++|++|++++|.+++..  +..+..+++|+.|++++|.+.+..+..   +++|++|++++|++.+..+.......
T Consensus       345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  424 (606)
T 3t6q_A          345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL  424 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred             hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence            4444589999999999998765  667889999999999999988766544   67899999999999877665444455


Q ss_pred             CCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhc
Q 042944          479 EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDT  558 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~  558 (637)
                      ++|++|++++|.+++..+..+..+++|++|++++|++.+...     ..+..+..+++|++|++++|.+++..|..+. .
T Consensus       425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~  498 (606)
T 3t6q_A          425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI-----QKTNSLQTLGRLEILVLSFCDLSSIDQHAFT-S  498 (606)
T ss_dssp             TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE-----CSSCGGGGCTTCCEEECTTSCCCEECTTTTT-T
T ss_pred             ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc-----ccchhhccCCCccEEECCCCccCccChhhhc-c
Confidence            999999999999998888999999999999999999874211     2235688899999999999999866666665 7


Q ss_pred             CCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944          559 LPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH  622 (637)
Q Consensus       559 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~  622 (637)
                      +++|++|+|++|++++..|..+..+++| .|++++|.+++..|..|..+++|+++++++|++..
T Consensus       499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred             ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence            9999999999999998899999999999 99999999999889999999999999999999964

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.2e-51  Score=445.99  Aligned_cols=505  Identities=20%  Similarity=0.217  Sum_probs=361.8

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCC
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTAL  167 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L  167 (637)
                      +++++|++++|.++++.+   ..+.++++|++|++++|.+++..+..+.++ ++|++|++++|.++ .+++.+|+++++|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l-~~L~~L~Ls~n~l~-~~~p~~~~~l~~L  106 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKS---YSFSNFSELQWLDLSRCEIETIEDKAWHGL-HHLSNLILTGNPIQ-SFSPGSFSGLTSL  106 (606)
T ss_dssp             TTCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCC-CCCTTSSTTCTTC
T ss_pred             CCcCEEECCCCCcCEeCh---hhccCCccCcEEeCCCCcccccCHHHhhch-hhcCEeECCCCccc-ccChhhcCCcccC
Confidence            566677777766666543   345556667777777766665555555555 66777777776666 4433366667777


Q ss_pred             CEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCC-CchhHhhhcccCCCCcccEEEcCCCCCCCCcC-CcccCCC---
Q 042944          168 QHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTG-QLPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEFSS---  241 (637)
Q Consensus       168 ~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~---  241 (637)
                      ++|++++|++..++ ..++++++|++|++++|.+.+ ..|..+++++     +|++|++++|.+....+ .+..+.+   
T Consensus       107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  181 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT-----NLVHVDLSYNYIQTITVNDLQFLRENPQ  181 (606)
T ss_dssp             CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT-----TCCEEECCSSCCCEECTTTTHHHHHCTT
T ss_pred             CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC-----CCCEEEccCCcceecChhhhhhhhcccc
Confidence            77777777666654 456666677777777666654 3466666666     67777776666664333 2333332   


Q ss_pred             -ccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCC--CCCCCCCCCCCCEEEccCCcCCC------CChhhhcCCC-
Q 042944          242 -LQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWG--SLPDLSVFPFLTRLDVSDSRLNG------TVSEGLGRLS-  311 (637)
Q Consensus       242 -L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~------~~~~~l~~l~-  311 (637)
                       +++|++++|.+++..+..+... +|+.|++++|.+..  ....+..++.++.+++..+.+..      .....+..+. 
T Consensus       182 ~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~  260 (606)
T 3vq2_A          182 VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD  260 (606)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred             ccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence             3366666666665444444443 66666666665531  11123335555555553332221      1111122222 


Q ss_pred             -CCCEEec-CCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEE
Q 042944          312 -KLEFLDL-FGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFL  389 (637)
Q Consensus       312 -~L~~L~l-~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  389 (637)
                       .++.+++ ..+.+.+..+.  +..+++|+.|+++++.+....  .+..+++|++|++.+|.+ +.+|. + .+++|+.|
T Consensus       261 l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L  333 (606)
T 3vq2_A          261 VTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSL  333 (606)
T ss_dssp             SEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEE
T ss_pred             ccHhheeccccccccccccc--cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccC-ccccc-C-CCCcccee
Confidence             2445555 55566654443  788899999999999986544  777888999999999999 56664 4 89999999


Q ss_pred             EeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcc--cccccCCCCCCeEeCCCCcCcCCCCC--CCCCccEEEccccc
Q 042944          390 DISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTV--LDLSLNYAGYPGIDLSSNDFEGPVPP--VPGNVTSLNLSNNK  465 (637)
Q Consensus       390 ~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~L~~n~  465 (637)
                      ++++|......  .+. .+++|++|++++|.+++..  +..+..+++|+.|++++|.+.+....  .+++|++|++++|+
T Consensus       334 ~l~~n~~~~~~--~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          334 TLTMNKGSISF--KKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             EEESCSSCEEC--CCC-CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE
T ss_pred             eccCCcCccch--hhc-cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc
Confidence            99999655433  222 3589999999999988663  67788999999999999998765422  36899999999999


Q ss_pred             ccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCC
Q 042944          466 FSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDN  545 (637)
Q Consensus       466 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n  545 (637)
                      +.+..+.......++|++|++++|.+++..|..+..+++|++|++++|.+.+.       .+|..+..+++|++|++++|
T Consensus       411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~l~~L~~L~Ls~n  483 (606)
T 3vq2_A          411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN-------TLSNVFANTTNLTFLDLSKC  483 (606)
T ss_dssp             EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-------EECSCCTTCTTCCEEECTTS
T ss_pred             cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc-------chHHhhccCCCCCEEECCCC
Confidence            99877644444459999999999999988999999999999999999998731       25778889999999999999


Q ss_pred             cccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccc-cceeeccCCCeeEE
Q 042944          546 KFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLT-AMVEKASSNSTITH  622 (637)
Q Consensus       546 ~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~-~L~~l~l~~n~l~~  622 (637)
                      .+++..|..+. .+++|++|+|++|++++..|..+..+++|+.|++++|+++ .+|..+..++ +|+++++++|++..
T Consensus       484 ~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          484 QLEQISWGVFD-TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             CCCEECTTTTT-TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             cCCccChhhhc-ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence            99866666665 7999999999999999888999999999999999999998 7888899997 59999999999864

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.1e-49  Score=434.41  Aligned_cols=488  Identities=21%  Similarity=0.187  Sum_probs=372.6

Q ss_pred             HHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhc
Q 042944           60 KLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS  139 (637)
Q Consensus        60 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~  139 (637)
                      ++.+++++|....+.      ...|..+++|++|++++|.+..+.+   .+|.++++|++|++++|.+.+..+..+..+ 
T Consensus        35 l~~L~Ls~n~i~~~~------~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-  104 (606)
T 3t6q_A           35 TECLEFSFNVLPTIQ------NTTFSRLINLTFLDLTRCQIYWIHE---DTFQSQHRLDTLVLTANPLIFMAETALSGP-  104 (606)
T ss_dssp             CCEEECTTCCCSEEC------TTTSTTCTTCSEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCSEECTTTTSSC-
T ss_pred             CcEEEccCCccCcCC------hhHhccCccceEEECCCCccceeCh---hhccCccccCeeeCCCCcccccChhhhccc-
Confidence            567999998776542      2457899999999999999988765   667788999999999999998777777777 


Q ss_pred             CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCc
Q 042944          140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNS  218 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~  218 (637)
                      ++|++|++++|.++ .++...+.++++|++|++++|++..++ ..+.++++|++|++++|.+.+..+..+..+.     +
T Consensus       105 ~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~  178 (606)
T 3t6q_A          105 KALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ-----Q  178 (606)
T ss_dssp             TTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT-----T
T ss_pred             ccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhc-----c
Confidence            99999999999998 775557999999999999999999862 3455599999999999999988889999998     8


Q ss_pred             cc--EEEcCCCCCCCCcCCcccCCCccEEEccCCcCC--------------------------CCCCCcCCCCC--CCcE
Q 042944          219 LE--ILKLGGNKLTGSLPDITEFSSLQELHLFDNKLD--------------------------GSFPEKFRKPS--PLVI  268 (637)
Q Consensus       219 L~--~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~--------------------------~~~~~~l~~l~--~L~~  268 (637)
                      |+  .|++++|.+...++.......|++|++++|...                          ...+..+..+.  +|+.
T Consensus       179 L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~  258 (606)
T 3t6q_A          179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES  258 (606)
T ss_dssp             CCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred             cceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence            98  899999999987777777778999998877410                          11112222222  7899


Q ss_pred             EEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCc
Q 042944          269 LNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNS  347 (637)
Q Consensus       269 L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  347 (637)
                      +++++|.+....+. +..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+ ..+.++++|++|++++|.
T Consensus       259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCS
T ss_pred             EEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCC
Confidence            99999999887776 445999999999999998 667778999999999999999987544 478899999999999999


Q ss_pred             ccccc-cCCCCCCCceeEEeccCCcCCCCc--cccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCc
Q 042944          348 LALNF-SFGWLPPFQLESIGLLHCKLGPHF--PKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGT  424 (637)
Q Consensus       348 ~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~  424 (637)
                      +.... ...+..+++|++|++++|.+....  +..+..+++|++|++++|.+.+..+..+... ++|++|++++|.+++.
T Consensus       337 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~  415 (606)
T 3t6q_A          337 KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVK  415 (606)
T ss_dssp             SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCCEECC
T ss_pred             cccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCcCCCc
Confidence            87544 445888999999999999988765  6778999999999999999988777766654 8999999999999876


Q ss_pred             cc-ccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhh
Q 042944          425 VL-DLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLL  500 (637)
Q Consensus       425 ~~-~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  500 (637)
                      .+ ..+..+++|+.|++++|.+.+..+..   +++|++|++++|++.+...                      ..+..+.
T Consensus       416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----------------------~~~~~~~  473 (606)
T 3t6q_A          416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI----------------------QKTNSLQ  473 (606)
T ss_dssp             TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE----------------------CSSCGGG
T ss_pred             ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc----------------------ccchhhc
Confidence            55 44789999999999999998766554   4455555555555543110                      1123455


Q ss_pred             ccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccc
Q 042944          501 RWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNL  580 (637)
Q Consensus       501 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l  580 (637)
                      .+++|+.|++++|.+++        ..|..+..+++|++|++++|++++..|..+. .++.| .|++++|++++..|..+
T Consensus       474 ~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~l~~L-~L~L~~N~l~~~~~~~~  543 (606)
T 3t6q_A          474 TLGRLEILVLSFCDLSS--------IDQHAFTSLKMMNHVDLSHNRLTSSSIEALS-HLKGI-YLNLASNHISIILPSLL  543 (606)
T ss_dssp             GCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECCSSCCCGGGGGGGT-TCCSC-EEECCSSCCCCCCGGGH
T ss_pred             cCCCccEEECCCCccCc--------cChhhhccccCCCEEECCCCccCcCChhHhC-ccccc-EEECcCCcccccCHhhc
Confidence            56666666666666552        2234455566666666666666544444444 46666 66666666665555555


Q ss_pred             cCCCCCcEeeCCCCcccc
Q 042944          581 CRLSKIQLLDFSLNSISG  598 (637)
Q Consensus       581 ~~l~~L~~L~ls~n~l~~  598 (637)
                      ..+++|+.|++++|++.+
T Consensus       544 ~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          544 PILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             HHHHTSSEEECTTCCEEC
T ss_pred             ccCCCCCEEeCCCCCccc
Confidence            666666666666666654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-48  Score=438.78  Aligned_cols=510  Identities=20%  Similarity=0.188  Sum_probs=408.2

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchh-hhHHHhhcCCCcEEECCCCCCCCCCCchhccCC
Q 042944           86 SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSA-YHWLFKISSNLLALDLNSNQLAGPIPDYAFSNM  164 (637)
Q Consensus        86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l  164 (637)
                      ..+++++|+|++|.++.+.+   ..+.++++|++|++++|...... +..+.++ ++|++|+|++|.+. .++..+|.++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~---~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L-~~L~~L~Ls~N~l~-~~~p~~~~~l   96 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTA---SSFPFLEQLQLLELGSQYTPLTIDKEAFRNL-PNLRILDLGSSKIY-FLHPDAFQGL   96 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECS---SSCSSCCSCSEEEECTTCCCCEECTTTTSSC-TTCCEEECTTCCCC-EECTTSSCSC
T ss_pred             CCCCcCEEECCCCcCCccCh---hHCcccccCeEEeCCCCCCccccCHHHhcCC-CCCCEEECCCCcCc-ccCHhHccCC
Confidence            34789999999999998765   66778899999999999654444 5666666 99999999999998 5544489999


Q ss_pred             CCCCEEEcCCCcccc-hhhh--cCCCCCCcEEEcCCCcCCCCch-hHhhhcccCCCCcccEEEcCCCCCCCCcC-CcccC
Q 042944          165 TALQHLNLSLNQISA-ISKS--FGNMCGLKTLHLFDNNLTGQLP-ELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEF  239 (637)
Q Consensus       165 ~~L~~L~L~~n~l~~-l~~~--~~~l~~L~~L~l~~n~i~~~~~-~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~~~~  239 (637)
                      ++|++|++++|.+.. ++..  +.++++|++|++++|.+.+..+ ..|++++     +|++|++++|.+....+ .+..+
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~-----~L~~L~Ls~N~i~~~~~~~l~~l  171 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN-----SLKSIDFSSNQIFLVCEHELEPL  171 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS-----SCCEEEEESSCCCCCCSGGGHHH
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC-----CCCEEECCCCcCCeeCHHHcccc
Confidence            999999999999987 4444  8999999999999999986654 6788898     99999999999886544 45555


Q ss_pred             --CCccEEEccCCcCCCCCCCcCCCCCC------CcEEEcCCCCCCCCCCCC----CCCCCCCEEEccCCc---------
Q 042944          240 --SSLQELHLFDNKLDGSFPEKFRKPSP------LVILNLDGNQLWGSLPDL----SVFPFLTRLDVSDSR---------  298 (637)
Q Consensus       240 --~~L~~L~l~~n~i~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~----~~~~~L~~L~l~~n~---------  298 (637)
                        ++|+.|++++|.+.+..+..+..+++      |+.|++++|.+....+..    ....+++.+.++.+.         
T Consensus       172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~  251 (844)
T 3j0a_A          172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN  251 (844)
T ss_dssp             HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred             cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence              79999999999998877777666655      999999999876544332    224678888877432         


Q ss_pred             CCCCChhhhcCC--CCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCc
Q 042944          299 LNGTVSEGLGRL--SKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHF  376 (637)
Q Consensus       299 ~~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  376 (637)
                      +.+.....+.++  ++|+.|++++|.+.+.. ...+..+++|+.|++++|.+....+..+..+++|++|++++|.+....
T Consensus       252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  330 (844)
T 3j0a_A          252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY  330 (844)
T ss_dssp             STTGGGTTTTTTTTSCCCEEECTTCCCCEEC-SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC
T ss_pred             cCCCChhhhhccccCCccEEECCCCcccccC-hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC
Confidence            222233344443  68999999999988644 347889999999999999999888888999999999999999998888


Q ss_pred             cccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCc
Q 042944          377 PKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNV  456 (637)
Q Consensus       377 ~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L  456 (637)
                      +..+..+++|+.|++++|.+....+..+.. +++|++|++++|.+++..     .+++|+.+++++|++.. .|....++
T Consensus       331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~~-l~~~~~~l  403 (844)
T 3j0a_A          331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKF-LEKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLVT-LPKINLTA  403 (844)
T ss_dssp             SCSCSSCTTCCEEECCSCCCCCCCSSCSCS-CCCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCCC-CCCCCTTC
T ss_pred             HHHhcCCCCCCEEECCCCCCCccChhhhcC-CCCCCEEECCCCCCCccc-----CCCCcchhccCCCCccc-cccccccc
Confidence            889999999999999999998776665544 489999999999987532     37889999999999984 45557789


Q ss_pred             cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCch-hhhccCCCcEEeccCccCCCCccccccccCCccccCCC
Q 042944          457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD-CLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCN  535 (637)
Q Consensus       457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~  535 (637)
                      +.|++++|++.+..........++|+.|++++|.+++..+. .+..+++|+.|++++|.+....+.   +..+..+..++
T Consensus       404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~---~~~~~~~~~l~  480 (844)
T 3j0a_A          404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET---ELCWDVFEGLS  480 (844)
T ss_dssp             CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCS---CCCSSCSSCBC
T ss_pred             ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccc---ccchhhhcCcc
Confidence            99999999998765443333459999999999999865433 456689999999999998743221   23455688899


Q ss_pred             CCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeecc
Q 042944          536 ELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKAS  615 (637)
Q Consensus       536 ~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l  615 (637)
                      +|++|++++|.++ .++...+..+++|+.|+|++|++++..+..+.  ++|+.|++++|++++..|..|.   +|+.+++
T Consensus       481 ~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l  554 (844)
T 3j0a_A          481 HLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDI  554 (844)
T ss_dssp             CEECCCCCHHHHT-TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEE
T ss_pred             cccEEECCCCccc-ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEe
Confidence            9999999999998 55555444799999999999999965555554  8999999999999988887764   7889999


Q ss_pred             CCCeeEE
Q 042944          616 SNSTITH  622 (637)
Q Consensus       616 ~~n~l~~  622 (637)
                      ++|++..
T Consensus       555 ~~Np~~C  561 (844)
T 3j0a_A          555 THNKFIC  561 (844)
T ss_dssp             EEECCCC
T ss_pred             cCCCccc
Confidence            9998753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.7e-47  Score=419.20  Aligned_cols=505  Identities=17%  Similarity=0.119  Sum_probs=422.7

Q ss_pred             CCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCC
Q 042944           89 SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQ  168 (637)
Q Consensus        89 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~  168 (637)
                      .-++++.+++.++.++    ..+.  +++++|++++|.+++..+..+.++ ++|++|++++|.++ .++..+|.++++|+
T Consensus        12 ~~~~~~c~~~~l~~ip----~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~   83 (606)
T 3vq2_A           12 PNITYQCMDQKLSKVP----DDIP--SSTKNIDLSFNPLKILKSYSFSNF-SELQWLDLSRCEIE-TIEDKAWHGLHHLS   83 (606)
T ss_dssp             TTTEEECTTSCCSSCC----TTSC--TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTCCCC-EECTTTTTTCTTCC
T ss_pred             CCCceEccCCCcccCC----CCCC--CCcCEEECCCCCcCEeChhhccCC-ccCcEEeCCCCccc-ccCHHHhhchhhcC
Confidence            4568999999999885    3332  789999999999998777777777 99999999999998 77665899999999


Q ss_pred             EEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC--CcCCcccCCCccEE
Q 042944          169 HLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG--SLPDITEFSSLQEL  245 (637)
Q Consensus       169 ~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L  245 (637)
                      +|++++|+++.+ |..|+++++|++|++++|.+.+..+..+++++     +|++|++++|.+..  .+..+..+++|++|
T Consensus        84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L  158 (606)
T 3vq2_A           84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI-----TLKKLNVAHNFIHSCKLPAYFSNLTNLVHV  158 (606)
T ss_dssp             EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT-----TCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred             EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC-----CCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence            999999999997 88999999999999999999877778899998     99999999999985  45668999999999


Q ss_pred             EccCCcCCCCCCCcCCCCCCCc----EEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCC-CCChhhhcCCCCCCEEecCC
Q 042944          246 HLFDNKLDGSFPEKFRKPSPLV----ILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLN-GTVSEGLGRLSKLEFLDLFG  320 (637)
Q Consensus       246 ~l~~n~i~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~  320 (637)
                      ++++|.+++..+..+..+++|+    ++++++|.+....+......+|++|++++|.+. +..+..+..++.++.+++..
T Consensus       159 ~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~  238 (606)
T 3vq2_A          159 DLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL  238 (606)
T ss_dssp             ECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEE
T ss_pred             EccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccc
Confidence            9999999988777777766554    899999999988877777679999999999886 35677788999999888765


Q ss_pred             CcCCCc-----cchhhhcCCC--CCcEEEc-cCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEee
Q 042944          321 NSLEGM-----ITESHVSNLS--KLKYMDF-SFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDIS  392 (637)
Q Consensus       321 n~~~~~-----~~~~~~~~l~--~L~~L~l-~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  392 (637)
                      +.+...     .....+..+.  +++.+++ ..+.+....+. +..+++|+.+++.+|.+.. ++ ++..+++|+.|+++
T Consensus       239 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~  315 (606)
T 3vq2_A          239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSII  315 (606)
T ss_dssp             ECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEE
T ss_pred             cccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcc
Confidence            443321     1122333333  4566777 55666666555 8889999999999999864 44 78999999999999


Q ss_pred             CCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCC--CC---CCCCccEEEccccccc
Q 042944          393 DTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPV--PP---VPGNVTSLNLSNNKFS  467 (637)
Q Consensus       393 ~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~---~~~~L~~L~L~~n~l~  467 (637)
                      +|.+. ..+. +  .+++|++|++++|...+..  .+..+++|+.|++++|.+.+..  +.   .+++|++|++++|++.
T Consensus       316 ~n~l~-~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  389 (606)
T 3vq2_A          316 RCQLK-QFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI  389 (606)
T ss_dssp             SCCCS-SCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE
T ss_pred             cccCc-cccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc
Confidence            99994 4553 3  4589999999999665433  5678999999999999988653  22   3789999999999988


Q ss_pred             CcccccccccCCCccEEeCCCCCCcccCc-hhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCc
Q 042944          468 GPISSLCSISGEYFSYLDVSDNLLSGELP-DCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNK  546 (637)
Q Consensus       468 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~  546 (637)
                      +....+  ...++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+        ..|..+..+++|++|++++|.
T Consensus       390 ~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~l~~n~  459 (606)
T 3vq2_A          390 IMSANF--MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI--------DFDGIFLGLTSLNTLKMAGNS  459 (606)
T ss_dssp             EECCCC--TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE--------CCTTTTTTCTTCCEEECTTCE
T ss_pred             cchhhc--cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc--------cchhhhcCCCCCCEEECCCCc
Confidence            755322  233999999999999997776 689999999999999999873        456778899999999999999


Q ss_pred             cccc-CChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEEEEE
Q 042944          547 FSGT-IPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYV  625 (637)
Q Consensus       547 l~~~-~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~  625 (637)
                      +++. +|..+. .+++|++|++++|++++..|..+..+++|++|++++|++++..|..|..+++|++|++++|+|+.++.
T Consensus       460 l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~  538 (606)
T 3vq2_A          460 FKDNTLSNVFA-NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG  538 (606)
T ss_dssp             EGGGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEES
T ss_pred             CCCcchHHhhc-cCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCH
Confidence            9863 566555 79999999999999998888999999999999999999999999999999999999999999998875


Q ss_pred             E
Q 042944          626 Y  626 (637)
Q Consensus       626 ~  626 (637)
                      .
T Consensus       539 ~  539 (606)
T 3vq2_A          539 I  539 (606)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7.1e-46  Score=419.54  Aligned_cols=501  Identities=21%  Similarity=0.193  Sum_probs=411.7

Q ss_pred             HHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCC-CCcccccccCCCCCccEEECCCCCCCchhhhHHH
Q 042944           58 ILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLS-INRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLF  136 (637)
Q Consensus        58 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~  136 (637)
                      ..++.+++++|......      ...|..+++|++|++++|.... +.+   .++.++++|++|+|++|.+.+..+..+.
T Consensus        24 ~~l~~LdLs~N~i~~i~------~~~~~~l~~L~~LdLs~n~~~~~i~~---~~f~~L~~L~~L~Ls~N~l~~~~p~~~~   94 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVT------ASSFPFLEQLQLLELGSQYTPLTIDK---EAFRNLPNLRILDLGSSKIYFLHPDAFQ   94 (844)
T ss_dssp             TTCCEEEEESCCCCEEC------SSSCSSCCSCSEEEECTTCCCCEECT---TTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred             CCcCEEECCCCcCCccC------hhHCcccccCeEEeCCCCCCccccCH---HHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence            35678999998765432      2347899999999999995443 333   6678889999999999999988788787


Q ss_pred             hhcCCCcEEECCCCCCCCCCCc-hhccCCCCCCEEEcCCCcccch--hhhcCCCCCCcEEEcCCCcCCCCchhHhhhc--
Q 042944          137 KISSNLLALDLNSNQLAGPIPD-YAFSNMTALQHLNLSLNQISAI--SKSFGNMCGLKTLHLFDNNLTGQLPELFLNL--  211 (637)
Q Consensus       137 ~~~~~L~~L~L~~n~l~~~l~~-~~~~~l~~L~~L~L~~n~l~~l--~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l--  211 (637)
                      .+ ++|++|++++|.+.+.++. ..+.++++|++|++++|.+..+  +..|+++++|++|++++|.+.+..+..+..+  
T Consensus        95 ~l-~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~  173 (844)
T 3j0a_A           95 GL-FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG  173 (844)
T ss_dssp             SC-SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred             CC-cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence            77 9999999999999855554 3489999999999999999885  3579999999999999999998888888877  


Q ss_pred             ccCCCCcccEEEcCCCCCCCCcC-CcccCC------CccEEEccCCcCCCCCCCcCCCC---CCCcEEEcCCCCCC----
Q 042944          212 SGCSKNSLEILKLGGNKLTGSLP-DITEFS------SLQELHLFDNKLDGSFPEKFRKP---SPLVILNLDGNQLW----  277 (637)
Q Consensus       212 ~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~------~L~~L~l~~n~i~~~~~~~l~~l---~~L~~L~l~~~~~~----  277 (637)
                      +     +|+.|++++|.+....+ .+..++      .|++|++++|.+++..+..+...   +.++.+.+..+...    
T Consensus       174 ~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~  248 (844)
T 3j0a_A          174 K-----TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG  248 (844)
T ss_dssp             C-----SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred             C-----ccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence            5     99999999999886433 344444      49999999999887666665433   67888888743322    


Q ss_pred             -----CCCC-CCCC--CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCccc
Q 042944          278 -----GSLP-DLSV--FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA  349 (637)
Q Consensus       278 -----~~~~-~~~~--~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  349 (637)
                           .... .+.+  .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+.++++|++|++++|.+.
T Consensus       249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~  327 (844)
T 3j0a_A          249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLG  327 (844)
T ss_dssp             CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESCCCS
T ss_pred             ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh-HHhcCCCCCCEEECCCCCCC
Confidence                 1111 1222  4789999999999998888889999999999999999987544 47899999999999999999


Q ss_pred             ccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccc
Q 042944          350 LNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLS  429 (637)
Q Consensus       350 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~  429 (637)
                      ...+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+...      +++|++|++++|+++.. +.  
T Consensus       328 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l-~~--  398 (844)
T 3j0a_A          328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF------IPSIPDIFLSGNKLVTL-PK--  398 (844)
T ss_dssp             CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS------CCSCSEEEEESCCCCCC-CC--
T ss_pred             ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC------CCCcchhccCCCCcccc-cc--
Confidence            8888899999999999999999988888889999999999999999986433      48999999999999844 32  


Q ss_pred             cCCCCCCeEeCCCCcCcCCCCC----CCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCc-----ccCchhhh
Q 042944          430 LNYAGYPGIDLSSNDFEGPVPP----VPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLS-----GELPDCLL  500 (637)
Q Consensus       430 ~~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~l~  500 (637)
                       ....++.+++++|.+.+....    .+++|++|++++|++++..+.......++|+.|++++|.++     +..+..|.
T Consensus       399 -~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~  477 (844)
T 3j0a_A          399 -INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE  477 (844)
T ss_dssp             -CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred             -cccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence             256899999999999875432    47899999999999987655544444599999999999987     34456788


Q ss_pred             ccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccc
Q 042944          501 RWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNL  580 (637)
Q Consensus       501 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l  580 (637)
                      ++++|+.|++++|.+++        ..|..+..+++|++|++++|+++ .+|...+  .++|+.|+|++|++++..|..+
T Consensus       478 ~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~--~~~L~~L~Ls~N~l~~~~~~~~  546 (844)
T 3j0a_A          478 GLSHLQVLYLNHNYLNS--------LPPGVFSHLTALRGLSLNSNRLT-VLSHNDL--PANLEILDISRNQLLAPNPDVF  546 (844)
T ss_dssp             CBCCEECCCCCHHHHTT--------CCTTSSSSCCSCSEEEEESCCCS-SCCCCCC--CSCCCEEEEEEECCCCCCSCCC
T ss_pred             CcccccEEECCCCcccc--------cChhHccchhhhheeECCCCCCC-ccChhhh--hccccEEECCCCcCCCCChhHh
Confidence            99999999999999883        34456789999999999999998 5665555  2899999999999998888665


Q ss_pred             cCCCCCcEeeCCCCcccc
Q 042944          581 CRLSKIQLLDFSLNSISG  598 (637)
Q Consensus       581 ~~l~~L~~L~ls~n~l~~  598 (637)
                         .+|+.|++++|++..
T Consensus       547 ---~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          547 ---VSLSVLDITHNKFIC  561 (844)
T ss_dssp             ---SSCCEEEEEEECCCC
T ss_pred             ---CCcCEEEecCCCccc
Confidence               588999999999875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.2e-46  Score=403.63  Aligned_cols=484  Identities=21%  Similarity=0.225  Sum_probs=233.8

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCC
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTAL  167 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L  167 (637)
                      +++++|++++|.++++.+   ..+..+++|++|++++|.+.+..+..+.++ ++|++|++++|.++ .++..+|.++++|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n~l~-~~~~~~~~~l~~L  102 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQ-SLALGAFSGLSSL  102 (570)
T ss_dssp             SSCCEEECCSCCCCEECT---TTTTTCSSCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCC-EECTTTTTTCTTC
T ss_pred             ccccEEEccCCccCccCh---hHhhCCCCceEEECCCCcCCccCcccccCc-hhCCEEeCcCCcCC-ccCHhhhcCcccc
Confidence            356666666666665543   344555666666666666665444444444 66666666666665 4544456666666


Q ss_pred             CEEEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCC-CchhHhhhcccCCCCcccEEEcCCCCCCCCcC-CcccCCCc--
Q 042944          168 QHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTG-QLPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEFSSL--  242 (637)
Q Consensus       168 ~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~L--  242 (637)
                      ++|++++|+++.++. .++++++|++|++++|.+.+ ..|..+++++     +|++|++++|.+....+ .+..+++|  
T Consensus       103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~  177 (570)
T 2z63_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPL  177 (570)
T ss_dssp             CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred             ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccC-----CCCEEeCcCCccceecHHHccchhccch
Confidence            666666666666543 46666666666666666654 2455666665     66666666666554322 24444444  


Q ss_pred             --cEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCC--CCCCCCCCCCCEEEccCCcCC------CCChhhhcCCCC
Q 042944          243 --QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGS--LPDLSVFPFLTRLDVSDSRLN------GTVSEGLGRLSK  312 (637)
Q Consensus       243 --~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~------~~~~~~l~~l~~  312 (637)
                        +.+++++|.+.+..+..+... +|+.+++++|.....  ...+..++.++...+....+.      ......+..+++
T Consensus       178 ~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~  256 (570)
T 2z63_A          178 LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN  256 (570)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGG
T ss_pred             hhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccc
Confidence              556666666555545444443 455665555532110  001112333333322211110      011111111111


Q ss_pred             --CCEEecCCC-cCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEE
Q 042944          313 --LEFLDLFGN-SLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFL  389 (637)
Q Consensus       313 --L~~L~l~~n-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  389 (637)
                        ++.++++++ .+.+..+ ..+..+++|++|++++|.+.. .+..+... +|++|++.+|.+. .+|.  ..+++|+.|
T Consensus       257 l~l~~l~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L  330 (570)
T 2z63_A          257 LTIEEFRLAYLDYYLDDII-DLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRL  330 (570)
T ss_dssp             SEEEEEEEEETTEEESCST-TTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEE
T ss_pred             cchhhhhhhcchhhhhhch-hhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEE
Confidence              233444443 2222222 234455555555555555542 22233333 5555555555554 2222  244555555


Q ss_pred             EeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcc--cccccCCCCCCeEeCCCCcCcCCCCC--CCCCccEEEccccc
Q 042944          390 DISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTV--LDLSLNYAGYPGIDLSSNDFEGPVPP--VPGNVTSLNLSNNK  465 (637)
Q Consensus       390 ~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~L~~n~  465 (637)
                      ++++|.+....+.   ..+++|++|++++|.+++..  +..+..+++|+.|++++|.+.+..+.  .+++|++|++++|+
T Consensus       331 ~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~  407 (570)
T 2z63_A          331 TFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN  407 (570)
T ss_dssp             EEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE
T ss_pred             eCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCc
Confidence            5555554443332   22355555555555554332  33444555555555555554433221  23455555555555


Q ss_pred             ccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCC
Q 042944          466 FSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDN  545 (637)
Q Consensus       466 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n  545 (637)
                      +.+..+...+...++|++|++++|.+.+..+..+..+++|+.|++++|.+.+       +.+|..+..+++|++|++++|
T Consensus       408 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-------NFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             EESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG-------GEECSCCTTCTTCCEEECTTS
T ss_pred             cccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCcc-------ccchhhhhcccCCCEEECCCC
Confidence            5444332222222455555555555554444445555555555555554431       123444445555555555555


Q ss_pred             cccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944          546 KFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA  599 (637)
Q Consensus       546 ~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~  599 (637)
                      .+++..|..+. .+++|++|++++|++++..|..+..+++|+.|++++|++.+.
T Consensus       481 ~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          481 QLEQLSPTAFN-SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccccCChhhhh-cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            55433333333 345555555555555544444444555555555555555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-44  Score=394.08  Aligned_cols=483  Identities=18%  Similarity=0.199  Sum_probs=387.5

Q ss_pred             HHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhh
Q 042944           59 LKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI  138 (637)
Q Consensus        59 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~  138 (637)
                      .++.++++++......      ...|..+++|++|++++|.+.++.+   ..+.++++|++|++++|.++...+..+..+
T Consensus        29 ~l~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~n~i~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   99 (570)
T 2z63_A           29 STKNLDLSFNPLRHLG------SYSFFSFPELQVLDLSRCEIQTIED---GAYQSLSHLSTLILTGNPIQSLALGAFSGL   99 (570)
T ss_dssp             SCCEEECCSCCCCEEC------TTTTTTCSSCCEEECTTCCCCEECT---TTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred             cccEEEccCCccCccC------hhHhhCCCCceEEECCCCcCCccCc---ccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence            3567899998765443      2357899999999999999998764   567788999999999999997777777776


Q ss_pred             cCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCC
Q 042944          139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSK  216 (637)
Q Consensus       139 ~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~  216 (637)
                       ++|++|++++|.+. .++...++++++|++|++++|.+..  +|..|+++++|++|++++|.+.+..+..++.+.    
T Consensus       100 -~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----  173 (570)
T 2z63_A          100 -SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH----  173 (570)
T ss_dssp             -TTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH----
T ss_pred             -cccccccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh----
Confidence             99999999999998 7776679999999999999999987  689999999999999999999988888899888    


Q ss_pred             Ccc----cEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCC-CCCCcCCCCCCCcEEEcCCCCCC------CCCC-CCC
Q 042944          217 NSL----EILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDG-SFPEKFRKPSPLVILNLDGNQLW------GSLP-DLS  284 (637)
Q Consensus       217 ~~L----~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~~~~~------~~~~-~~~  284 (637)
                       +|    +.+++++|.+....+......+|++|++++|.... ..+..+..++.++...+......      .... .+.
T Consensus       174 -~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~  252 (570)
T 2z63_A          174 -QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE  252 (570)
T ss_dssp             -TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred             -ccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence             88    89999999998776665555689999999985432 22334556666666554322111      1111 111


Q ss_pred             CCC--CCCEEEccCC-cCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCc
Q 042944          285 VFP--FLTRLDVSDS-RLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQ  361 (637)
Q Consensus       285 ~~~--~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  361 (637)
                      .++  .++.++++++ .+.+..+..+..+++|+.|++++|.+.+ .+. .+..+ +|++|++++|.+.....   ..+++
T Consensus       253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~-~~~~~-~L~~L~l~~n~~~~l~~---~~l~~  326 (570)
T 2z63_A          253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKD-FSYNF-GWQHLELVNCKFGQFPT---LKLKS  326 (570)
T ss_dssp             GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCB-CCSCC-CCSEEEEESCBCSSCCB---CBCSS
T ss_pred             cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhh-hhccC-CccEEeeccCcccccCc---ccccc
Confidence            222  3567777777 6666777888899999999999999885 333 46667 99999999999883332   46788


Q ss_pred             eeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCcc--chhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEe
Q 042944          362 LESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAV--PSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGID  439 (637)
Q Consensus       362 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~  439 (637)
                      |+.+++.+|.+....+.  ..+++|++|++++|.+....  +..+.. +++|++|++++|.+++..+. +..+++|+.|+
T Consensus       327 L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~  402 (570)
T 2z63_A          327 LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD  402 (570)
T ss_dssp             CCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHT-CSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred             cCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccc-cCccCEEECCCCcccccccc-ccccCCCCEEE
Confidence            99999999998766554  78899999999999988754  455555 48999999999999876665 88999999999


Q ss_pred             CCCCcCcCCCC----CCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCc-ccCchhhhccCCCcEEeccCcc
Q 042944          440 LSSNDFEGPVP----PVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLS-GELPDCLLRWQALAVLNLANNN  514 (637)
Q Consensus       440 l~~n~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~  514 (637)
                      +++|.+.+..+    ..+++|++|++++|++.+..+.... ..++|++|++++|.++ +.+|..+..+++|+.|++++|+
T Consensus       403 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  481 (570)
T 2z63_A          403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  481 (570)
T ss_dssp             CTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh-cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence            99999987654    2378999999999999876665433 2399999999999997 4688899999999999999999


Q ss_pred             CCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCC
Q 042944          515 FSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIP  577 (637)
Q Consensus       515 l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~  577 (637)
                      +++        ..|..+..+++|++|++++|.++ .++...+..+++|+.|++++|+++...|
T Consensus       482 l~~--------~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          482 LEQ--------LSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             CCE--------ECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccc--------CChhhhhcccCCCEEeCCCCcCC-CCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            883        34677889999999999999998 4554444479999999999999986554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.2e-44  Score=391.97  Aligned_cols=480  Identities=19%  Similarity=0.220  Sum_probs=299.5

Q ss_pred             CCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCC
Q 042944           87 LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTA  166 (637)
Q Consensus        87 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~  166 (637)
                      |+.....+.+++.++.++    ..+.  ++|++|++++|.+++..+..+..+ ++|++|++++|.+. .++..+|.++++
T Consensus         4 C~~~~~c~~~~~~l~~ip----~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~i~-~~~~~~~~~l~~   75 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIP----SGLT--AAMKSLDLSFNKITYIGHGDLRAC-ANLQVLILKSSRIN-TIEGDAFYSLGS   75 (549)
T ss_dssp             ECTTSEEECTTSCCSSCC----SCCC--TTCCEEECCSSCCCEECSSTTSSC-TTCCEEECTTSCCC-EECTTTTTTCTT
T ss_pred             CCCCceEECCCCcccccc----ccCC--CCccEEECcCCccCccChhhhhcC-CcccEEECCCCCcC-ccChhhcccccc
Confidence            445555788888888875    3332  789999999999987777767776 99999999999998 666558899999


Q ss_pred             CCEEEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCCC-chhHhhhcccCCCCcccEEEcCCCC-CCCCc-CCcccCCCc
Q 042944          167 LQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQ-LPELFLNLSGCSKNSLEILKLGGNK-LTGSL-PDITEFSSL  242 (637)
Q Consensus       167 L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~~~~~~L~~L~l~~n~-~~~~~-~~~~~~~~L  242 (637)
                      |++|++++|+++.++. .|+++++|++|++++|.+.+. .+..+..++     +|++|++++|. +...+ ..+..+++|
T Consensus        76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-----~L~~L~L~~n~~~~~~~~~~~~~l~~L  150 (549)
T 2z81_A           76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-----NLQTLRIGNVETFSEIRRIDFAGLTSL  150 (549)
T ss_dssp             CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-----TCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred             CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-----CccEEECCCCccccccCHhhhhccccc
Confidence            9999999999998654 589999999999999988753 456778887     99999999988 44333 257888899


Q ss_pred             cEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCC-CCCCCCEEEccCCcCCCCC---hhhhcCCCCCCEEec
Q 042944          243 QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLS-VFPFLTRLDVSDSRLNGTV---SEGLGRLSKLEFLDL  318 (637)
Q Consensus       243 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~---~~~l~~l~~L~~L~l  318 (637)
                      ++|++++|.+++..+..+..+++|++|+++.|.+......+. .+++|++|++++|.+.+..   ......+++|+.|++
T Consensus       151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l  230 (549)
T 2z81_A          151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF  230 (549)
T ss_dssp             EEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEE
T ss_pred             CeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceec
Confidence            999999999888788888889999999999888764433332 3788999999999887632   122345778889999


Q ss_pred             CCCcCCCccch---hhhcCCCCCcEEEccCCccccccc------CCCCCCCceeEEeccCCcCCCCc-----cccccCCC
Q 042944          319 FGNSLEGMITE---SHVSNLSKLKYMDFSFNSLALNFS------FGWLPPFQLESIGLLHCKLGPHF-----PKWLQSQK  384 (637)
Q Consensus       319 ~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~-----~~~l~~~~  384 (637)
                      ++|.+.+..+.   ..+..+++|+.+++++|.+.....      ..+..+.+++.+.+.++.+....     +......+
T Consensus       231 ~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~  310 (549)
T 2z81_A          231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE  310 (549)
T ss_dssp             ESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHST
T ss_pred             cccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcc
Confidence            88887654332   234567888888888887764321      12234455666666665543211     11122234


Q ss_pred             CccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCccc---ccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEc
Q 042944          385 NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVL---DLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNL  461 (637)
Q Consensus       385 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L  461 (637)
                      +|+.|++++|.+.. .|..+...+++|++|++++|.+++..+   ..+..+++|+.|++++|++++.             
T Consensus       311 ~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------  376 (549)
T 2z81_A          311 KVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM-------------  376 (549)
T ss_dssp             TCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCH-------------
T ss_pred             cceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccc-------------
Confidence            56666666666553 333333333566666666666654432   2234455555555555555432             


Q ss_pred             ccccccCcccc-cccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEE
Q 042944          462 SNNKFSGPISS-LCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKII  540 (637)
Q Consensus       462 ~~n~l~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L  540 (637)
                              .+. ......++|++|++++|.++ .+|..+..+++|++|++++|.++         .+|..+  .++|++|
T Consensus       377 --------~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~---------~l~~~~--~~~L~~L  436 (549)
T 2z81_A          377 --------QKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR---------VVKTCI--PQTLEVL  436 (549)
T ss_dssp             --------HHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS---------CCCTTS--CTTCSEE
T ss_pred             --------ccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc---------cccchh--cCCceEE
Confidence                    110 01111245555555555554 34444444555555555555544         222221  1345555


Q ss_pred             EcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCee
Q 042944          541 DAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTI  620 (637)
Q Consensus       541 ~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l  620 (637)
                      ++++|++++ ++    ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++..|+.|..+++|++|++++|++
T Consensus       437 ~Ls~N~l~~-~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          437 DVSNNNLDS-FS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             ECCSSCCSC-CC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             ECCCCChhh-hc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence            555555542 22    13455555555555554 3443 23455555555555555544444455555555555555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=5.2e-44  Score=386.89  Aligned_cols=463  Identities=21%  Similarity=0.250  Sum_probs=356.1

Q ss_pred             CCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCC
Q 042944           87 LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTA  166 (637)
Q Consensus        87 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~  166 (637)
                      .++|++|++++|.++++.+   ..+.++++|++|++++|.+.+..+..+..+ ++|++|++++|.+. .++...|+++++
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~-~~~~~~~~~l~~   99 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGH---GDLRACANLQVLILKSSRINTIEGDAFYSL-GSLEHLDLSDNHLS-SLSSSWFGPLSS   99 (549)
T ss_dssp             CTTCCEEECCSSCCCEECS---STTSSCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCC-SCCHHHHTTCTT
T ss_pred             CCCccEEECcCCccCccCh---hhhhcCCcccEEECCCCCcCccChhhcccc-ccCCEEECCCCccC-ccCHHHhccCCC
Confidence            3689999999999998764   567888999999999999998777777777 99999999999998 777767999999


Q ss_pred             CCEEEcCCCcccc--hhhhcCCCCCCcEEEcCCCcCCCCc-hhHhhhcccCCCCcccEEEcCCCCCCCC-cCCcccCCCc
Q 042944          167 LQHLNLSLNQISA--ISKSFGNMCGLKTLHLFDNNLTGQL-PELFLNLSGCSKNSLEILKLGGNKLTGS-LPDITEFSSL  242 (637)
Q Consensus       167 L~~L~L~~n~l~~--l~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~L  242 (637)
                      |++|++++|+++.  +|..+.++++|++|++++|...+.. +..+..++     +|++|++++|.+... +..+..+++|
T Consensus       100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~l~~l~~L  174 (549)
T 2z81_A          100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT-----SLNELEIKALSLRNYQSQSLKSIRDI  174 (549)
T ss_dssp             CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC-----EEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred             CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc-----ccCeeeccCCcccccChhhhhccccC
Confidence            9999999999996  4678999999999999999843344 46888888     999999999999864 4468889999


Q ss_pred             cEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCC----CCCCCCCCCCEEEccCCcCCCCCh----hhhcCCCCCC
Q 042944          243 QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL----PDLSVFPFLTRLDVSDSRLNGTVS----EGLGRLSKLE  314 (637)
Q Consensus       243 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~----~~l~~l~~L~  314 (637)
                      ++|++++|.+.......+..+++|++|++++|.+.+..    +....+++|+.|++++|.+.+..+    ..+..+++|+
T Consensus       175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~  254 (549)
T 2z81_A          175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS  254 (549)
T ss_dssp             EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred             ceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence            99999999987443333456899999999999997642    222338899999999998876433    3346788999


Q ss_pred             EEecCCCcCCCccc-----hhhhcCCCCCcEEEccCCcccccccCC-----CCCCCceeEEeccCCcCCCCccccc-cCC
Q 042944          315 FLDLFGNSLEGMIT-----ESHVSNLSKLKYMDFSFNSLALNFSFG-----WLPPFQLESIGLLHCKLGPHFPKWL-QSQ  383 (637)
Q Consensus       315 ~L~l~~n~~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~l-~~~  383 (637)
                      .+++++|.+.+...     ...+..+++++.+++.++.+.......     +....+++++++.+|.+. .+|..+ ..+
T Consensus       255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l  333 (549)
T 2z81_A          255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHL  333 (549)
T ss_dssp             EEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHC
T ss_pred             ccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcC
Confidence            99999998765321     123567889999999998876432111     122468999999999987 455544 679


Q ss_pred             CCccEEEeeCCCCCCccchh--hhhcCCCccEEECCCCcCCCccc--ccccCCCCCCeEeCCCCcCcCCCCCCCCCccEE
Q 042944          384 KNYYFLDISDTEISDAVPSW--FWDLSPNLYYLNLSHNHLEGTVL--DLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL  459 (637)
Q Consensus       384 ~~L~~L~l~~n~i~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L  459 (637)
                      ++|++|++++|.+.+..+..  ....+++|++|++++|.+++..+  ..+..+++|+.|++++|++++. |..+.     
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~-----  407 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQ-----  407 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCC-----
T ss_pred             ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-Chhhc-----
Confidence            99999999999998765432  12345899999999999987643  4577888888888888887642 22110     


Q ss_pred             EcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcE
Q 042944          460 NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKI  539 (637)
Q Consensus       460 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~  539 (637)
                                       ..++|++|++++|.++ .++..+  .++|+.|++++|++++         ++   ..+++|++
T Consensus       408 -----------------~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~---------~~---~~l~~L~~  455 (549)
T 2z81_A          408 -----------------WPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDS---------FS---LFLPRLQE  455 (549)
T ss_dssp             -----------------CCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSC---------CC---CCCTTCCE
T ss_pred             -----------------ccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhh---------hc---ccCChhcE
Confidence                             0155666666666655 233332  2578888888888772         22   36778888


Q ss_pred             EEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccc
Q 042944          540 IDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP  601 (637)
Q Consensus       540 L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p  601 (637)
                      |++++|+++ .+|.. . .+++|+.|+|++|++++..|..+..+++|+.|++++|++.+..|
T Consensus       456 L~Ls~N~l~-~ip~~-~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          456 LYISRNKLK-TLPDA-S-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             EECCSSCCS-SCCCG-G-GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             EECCCCccC-cCCCc-c-cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            888888887 77763 3 48888888888888887777778888888888888888876655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5.3e-44  Score=383.91  Aligned_cols=447  Identities=18%  Similarity=0.158  Sum_probs=289.3

Q ss_pred             cEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcC
Q 042944          118 TLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLF  196 (637)
Q Consensus       118 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~  196 (637)
                      ++|++++|.++. .|..+.   ++|++|++++|.+. .++...|.++++|++|++++|+++.+ |..|.++++|++|+++
T Consensus         3 ~~l~ls~n~l~~-ip~~~~---~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls   77 (520)
T 2z7x_B            3 FLVDRSKNGLIH-VPKDLS---QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS   77 (520)
T ss_dssp             CEEECTTSCCSS-CCCSCC---TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred             ceEecCCCCccc-cccccc---ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence            578999999884 444333   78999999999998 66655889999999999999999986 7789999999999999


Q ss_pred             CCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC--cCCcccCCCccEEEccCCcCCCCCCCcCCCCCCC--cEEEcC
Q 042944          197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS--LPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPL--VILNLD  272 (637)
Q Consensus       197 ~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~L~l~  272 (637)
                      +|.+. ..|..  .++     +|++|++++|.+...  +..+..+++|++|++++|.+++   ..+..+++|  +.|+++
T Consensus        78 ~N~l~-~lp~~--~l~-----~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~  146 (520)
T 2z7x_B           78 HNKLV-KISCH--PTV-----NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV  146 (520)
T ss_dssp             SSCCC-EEECC--CCC-----CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred             CCcee-ecCcc--ccC-----CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence            99988 45544  555     999999999998863  3568888999999999998875   456667777  999999


Q ss_pred             CCCC--CCCCCC-CCCCC-CCCEEEccCCcCCCCC-hhhhcCCCCCCEEecCCCc-------CCCccchhhhcCCCCCcE
Q 042944          273 GNQL--WGSLPD-LSVFP-FLTRLDVSDSRLNGTV-SEGLGRLSKLEFLDLFGNS-------LEGMITESHVSNLSKLKY  340 (637)
Q Consensus       273 ~~~~--~~~~~~-~~~~~-~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~-------~~~~~~~~~~~~l~~L~~  340 (637)
                      +|.+  ....+. +..+. ....+++++|.+.+.. ...+..+++|+.+++++|.       +.+..+  .+..+++|+.
T Consensus       147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~  224 (520)
T 2z7x_B          147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSN  224 (520)
T ss_dssp             ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCE
T ss_pred             cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhh
Confidence            9888  433332 22222 2335677888766533 3356678888999988886       433222  5778889999


Q ss_pred             EEccCCcccccccCCC---CCCCceeEEeccCCcCCCCccccc-----cCCCCccEEEeeCCCCCCccchhhhhcC--CC
Q 042944          341 MDFSFNSLALNFSFGW---LPPFQLESIGLLHCKLGPHFPKWL-----QSQKNYYFLDISDTEISDAVPSWFWDLS--PN  410 (637)
Q Consensus       341 L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~i~~~~~~~~~~~~--~~  410 (637)
                      |++++|.+.......+   ...++|++|++++|.+.+..|.++     ..+++|+.+++++|.+ .....++....  ++
T Consensus       225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~  303 (520)
T 2z7x_B          225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMN  303 (520)
T ss_dssp             EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCC
T ss_pred             ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCc
Confidence            9998887764322211   113478888888888877777777     7888888888888887 32223443321  46


Q ss_pred             ccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccc-cccccCCCccEEeC
Q 042944          411 LYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISS-LCSISGEYFSYLDV  486 (637)
Q Consensus       411 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~-~~~~~~~~L~~L~l  486 (637)
                      |++|++++|.+.....  ...+++|++|++++|.+.+..+..   +++|++|++++|++++.... ......++|++|++
T Consensus       304 L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          304 IKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             CSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             eeEEEcCCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            8888888887764331  246677777777777776644432   44555666666655531110 00111255555555


Q ss_pred             CCCCCcccCch-hhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 042944          487 SDNLLSGELPD-CLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAIL  565 (637)
Q Consensus       487 ~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L  565 (637)
                      ++|.+++.+|. .+..+++|++|++++|++++        .+|..+.  ++|++|++++|.++ .+|..++ .+++|++|
T Consensus       382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L  449 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD--------TIFRCLP--PRIKVLDLHSNKIK-SIPKQVV-KLEALQEL  449 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG--------GGGGSCC--TTCCEEECCSSCCC-CCCGGGG-GCTTCCEE
T ss_pred             CCCcCCcccccchhccCccCCEEECcCCCCCc--------chhhhhc--ccCCEEECCCCccc-ccchhhh-cCCCCCEE
Confidence            55555542332 24455555555555555542        1222221  44555555555554 5555555 45555555


Q ss_pred             eccCccccccCCcc-ccCCCCCcEeeCCCCcccc
Q 042944          566 SLRSNQFHGSIPRN-LCRLSKIQLLDFSLNSISG  598 (637)
Q Consensus       566 ~L~~n~~~~~~~~~-l~~l~~L~~L~ls~n~l~~  598 (637)
                      ++++|+++ .+|.. +..+++|++|++++|++.+
T Consensus       450 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          450 NVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence            55555555 34333 5555555555555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1e-42  Score=373.85  Aligned_cols=450  Identities=19%  Similarity=0.186  Sum_probs=366.8

Q ss_pred             cEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEE
Q 042944           91 RDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHL  170 (637)
Q Consensus        91 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L  170 (637)
                      ++|+++++.++.++    ..+.  ++|++|++++|.+.+..+..+..+ ++|++|++++|.++ .++..+|.++++|++|
T Consensus         3 ~~l~ls~n~l~~ip----~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKNGLIHVP----KDLS--QKTTILNISQNYISELWTSDILSL-SKLRILIISHNRIQ-YLDISVFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTSCCSSCC----CSCC--TTCSEEECCSSCCCCCCHHHHTTC-TTCCEEECCSSCCC-EEEGGGGTTCTTCCEE
T ss_pred             ceEecCCCCccccc----cccc--ccccEEECCCCcccccChhhcccc-ccccEEecCCCccC-CcChHHhhcccCCCEE
Confidence            57899999999774    3333  899999999999998777777777 99999999999998 6654489999999999


Q ss_pred             EcCCCcccchhhhcCCCCCCcEEEcCCCcCCC-CchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCc--cEEEc
Q 042944          171 NLSLNQISAISKSFGNMCGLKTLHLFDNNLTG-QLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSL--QELHL  247 (637)
Q Consensus       171 ~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L--~~L~l  247 (637)
                      ++++|+++.+|..  .+++|++|++++|.+.+ ..|..++.++     +|++|++++|.+..  ..+..+++|  ++|++
T Consensus        75 ~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~-----~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           75 DLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS-----QLKFLGLSTTHLEK--SSVLPIAHLNISKVLL  145 (520)
T ss_dssp             ECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT-----TCCEEEEEESSCCG--GGGGGGTTSCEEEEEE
T ss_pred             ecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCC-----cceEEEecCcccch--hhccccccceeeEEEe
Confidence            9999999998876  89999999999999986 4678999998     99999999999875  456777777  99999


Q ss_pred             cCCcC--CCCCCCcCCCCC-CCcEEEcCCCCCCCCCCC--CCCCCCCCEEEccCCc-------CCCCChhhhcCCCCCCE
Q 042944          248 FDNKL--DGSFPEKFRKPS-PLVILNLDGNQLWGSLPD--LSVFPFLTRLDVSDSR-------LNGTVSEGLGRLSKLEF  315 (637)
Q Consensus       248 ~~n~i--~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~n~-------~~~~~~~~l~~l~~L~~  315 (637)
                      ++|.+  .+..+..+..+. ....+++++|.+.+..+.  +..+++|+.+++++|.       +.+..+ .+..+++|+.
T Consensus       146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~  224 (520)
T 2z7x_B          146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSN  224 (520)
T ss_dssp             EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCE
T ss_pred             ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhh
Confidence            99998  667777777665 344667888887654433  3348999999999986       443343 6788999999


Q ss_pred             EecCCCcCCCccchhhh--cCCCCCcEEEccCCcccccccCCC-----CCCCceeEEeccCCcCCCCcc-ccccCC---C
Q 042944          316 LDLFGNSLEGMITESHV--SNLSKLKYMDFSFNSLALNFSFGW-----LPPFQLESIGLLHCKLGPHFP-KWLQSQ---K  384 (637)
Q Consensus       316 L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~l~~~---~  384 (637)
                      |++++|.+.+.......  ...++|++|++++|.+.+..+..+     ..++.|+.+++.+|.+  ..| .++..+   .
T Consensus       225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~  302 (520)
T 2z7x_B          225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNM  302 (520)
T ss_dssp             EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTC
T ss_pred             ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccC
Confidence            99999987653222111  124699999999999987777766     8899999999999988  344 444443   6


Q ss_pred             CccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCC-----CCCCCCccEE
Q 042944          385 NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPV-----PPVPGNVTSL  459 (637)
Q Consensus       385 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L  459 (637)
                      +|+.|++++|.+.....   ...+++|++|++++|.+++..+..+..+++|+.|++++|++.+..     ...+++|++|
T Consensus       303 ~L~~L~l~~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L  379 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLC---PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL  379 (520)
T ss_dssp             CCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred             ceeEEEcCCCccccccc---hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence            89999999999876442   134589999999999999988888999999999999999998632     2357899999


Q ss_pred             EcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcE
Q 042944          460 NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKI  539 (637)
Q Consensus       460 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~  539 (637)
                      ++++|++.+.++...+...++|+.|++++|.+++..+..+.  ++|+.|++++|+++         .+|..+..+++|++
T Consensus       380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~---------~ip~~~~~l~~L~~  448 (520)
T 2z7x_B          380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK---------SIPKQVVKLEALQE  448 (520)
T ss_dssp             ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC---------CCCGGGGGCTTCCE
T ss_pred             ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc---------ccchhhhcCCCCCE
Confidence            99999999855554344449999999999999877776664  79999999999998         78888889999999


Q ss_pred             EEcCCCcccccCChhhhhcCCCCcEEeccCcccccc
Q 042944          540 IDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS  575 (637)
Q Consensus       540 L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~  575 (637)
                      |++++|.++ .+|...+..+++|++|++++|+++..
T Consensus       449 L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          449 LNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             EECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence            999999998 78887555799999999999999743

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.2e-44  Score=389.87  Aligned_cols=357  Identities=18%  Similarity=0.224  Sum_probs=199.8

Q ss_pred             CCCCCCcCCcccCCCccEEEccCCcCCCC-----------------CCCcCC--CCCCCcEEEcCCCCCCCCCCC-CCCC
Q 042944          227 NKLTGSLPDITEFSSLQELHLFDNKLDGS-----------------FPEKFR--KPSPLVILNLDGNQLWGSLPD-LSVF  286 (637)
Q Consensus       227 n~~~~~~~~~~~~~~L~~L~l~~n~i~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~-~~~~  286 (637)
                      |.++..++.+..+++|++|++++|.+++.                 .|..+.  ++++|++|++++|.+.+..+. +..+
T Consensus       193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            44444344466666777777777776653                 566666  666677777766666554443 3346


Q ss_pred             CCCCEEEccCCc-CCC-CChhhhcCC------CCCCEEecCCCcCCCccch-hhhcCCCCCcEEEccCCcccccccCCCC
Q 042944          287 PFLTRLDVSDSR-LNG-TVSEGLGRL------SKLEFLDLFGNSLEGMITE-SHVSNLSKLKYMDFSFNSLALNFSFGWL  357 (637)
Q Consensus       287 ~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~  357 (637)
                      ++|++|++++|. +++ .+|..+..+      ++|+.|++++|.++. ++. ..+.++++|++|++++|.+....+ .+.
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~  350 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPVETSLQKMKKLGMLECLYNQLEGKLP-AFG  350 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCchhhhccCCCCCEEeCcCCcCccchh-hhC
Confidence            666677776666 655 455555544      666666666666663 322 246666666666666666664444 555


Q ss_pred             CCCceeEEeccCCcCCCCccccccCCCC-ccEEEeeCCCCCCccchhhhhc-CCCccEEECCCCcCCCccccccc-----
Q 042944          358 PPFQLESIGLLHCKLGPHFPKWLQSQKN-YYFLDISDTEISDAVPSWFWDL-SPNLYYLNLSHNHLEGTVLDLSL-----  430 (637)
Q Consensus       358 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~i~~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~~~-----  430 (637)
                      .+++|++|++++|.+. .+|.++..+++ |++|++++|.+. ..|..+... +++|++|++++|.+++..+..+.     
T Consensus       351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~  428 (636)
T 4eco_A          351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT  428 (636)
T ss_dssp             EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred             CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccc
Confidence            5666666666666655 44555666666 666666666665 233333221 13566666666666555554444     


Q ss_pred             --CCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCch-hhhc------
Q 042944          431 --NYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD-CLLR------  501 (637)
Q Consensus       431 --~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~------  501 (637)
                        .++                     +|++|++++|+++...+. .+...++|++|++++|.++ .+|. .+..      
T Consensus       429 ~~~~~---------------------~L~~L~Ls~N~l~~lp~~-~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~  485 (636)
T 4eco_A          429 PFKGI---------------------NVSSINLSNNQISKFPKE-LFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFK  485 (636)
T ss_dssp             CCCCC---------------------CEEEEECCSSCCCSCCTH-HHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECT
T ss_pred             cccCC---------------------CCCEEECcCCccCcCCHH-HHccCCCCCEEECCCCCCC-CcCHHHhcccccccc
Confidence              333                     455555555555422222 1111255555555555555 2222 2221      


Q ss_pred             -cCCCcEEeccCccCCCCccccccccCCcccc--CCCCCcEEEcCCCcccccCChhhhhcCCCCcEEec------cCccc
Q 042944          502 -WQALAVLNLANNNFSGNFLTFFVGEIPPSLK--KCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSL------RSNQF  572 (637)
Q Consensus       502 -l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~--~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L------~~n~~  572 (637)
                       +++|+.|++++|.++         .+|..+.  .+++|++|++++|.++ .+|..++ .+++|+.|+|      ++|++
T Consensus       486 ~l~~L~~L~Ls~N~l~---------~lp~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~Ls~N~~ls~N~l  554 (636)
T 4eco_A          486 NTYLLTSIDLRFNKLT---------KLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPL-NSSTLKGFGIRNQRDAQGNRT  554 (636)
T ss_dssp             TGGGCCEEECCSSCCC---------BCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGG-GCSSCCEEECCSCBCTTCCBC
T ss_pred             ccCCccEEECcCCcCC---------ccChhhhhccCCCcCEEECCCCCCC-CcChhhh-cCCCCCEEECCCCcccccCcc
Confidence             125666666666655         4455444  5566666666666665 3555555 4666666666      33445


Q ss_pred             cccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEEEE
Q 042944          573 HGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIY  624 (637)
Q Consensus       573 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~  624 (637)
                      .+.+|..+..+++|++|++++|++ +.+|..+.  ++|++|++++|++..+.
T Consensus       555 ~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          555 LREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             cccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence            555666666666666666666666 35555554  56666666666665543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.7e-44  Score=391.30  Aligned_cols=460  Identities=18%  Similarity=0.224  Sum_probs=305.9

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCC------c------hhhhHHHhhcCCCcEEECCCCCCCCC
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLS------N------SAYHWLFKISSNLLALDLNSNQLAGP  155 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~------~------~~~~~~~~~~~~L~~L~L~~n~l~~~  155 (637)
                      .+++.|+|+++.+.+..+   ++++++++|++|+|++|.+.      +      ..|...  . ..|+ ++++++.+.+.
T Consensus        81 ~~V~~L~L~~~~l~g~lp---~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~-~~l~-l~l~~~~l~~~  153 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVP---DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--K-QKMR-MHYQKTFVDYD  153 (636)
T ss_dssp             CCEEEEECTTSCCEEEEC---GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--H-HHHH-THHHHHHTCCC
T ss_pred             CCEEEEEecCcccCCcCC---hHHhcCccceEEECcCCccccCCccccccccccCchHHH--H-HHHH-hhHHHhhhccC
Confidence            478888888888876654   66777888888888888641      1      122222  1 4456 66666666544


Q ss_pred             CCchhcc-CCCCCCEEEcCCCcccchhhhcCCCCCCcEEEc--CCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC-
Q 042944          156 IPDYAFS-NMTALQHLNLSLNQISAISKSFGNMCGLKTLHL--FDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG-  231 (637)
Q Consensus       156 l~~~~~~-~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l--~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~-  231 (637)
                      ++. .+. .+..+..+++....+..     .....++.+.+  ..|.+++ .|..+++++     +|++|++++|.++. 
T Consensus       154 ~~~-~~~~~~~~l~~~~l~~~~~~~-----~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~-----~L~~L~Ls~n~l~~~  221 (636)
T 4eco_A          154 PRE-DFSDLIKDCINSDPQQKSIKK-----SSRITLKDTQIGQLSNNITF-VSKAVMRLT-----KLRQFYMGNSPFVAE  221 (636)
T ss_dssp             GGG-GSCHHHHHHHHHCTTSCCCCC-----CCCCCCCTTTTTCCSCEEEE-ECGGGGGCT-----TCCEEEEESCCCCGG
T ss_pred             chh-hHHHHHHHHhhcCcccccccc-----ccccchhhhhhccccCCCcc-CCHHHhccc-----CCCEEECcCCccccc
Confidence            443 222 11111122221111110     01111111112  1344443 455555555     55555555555554 


Q ss_pred             -----------------CcCCcc--cCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCC-CCC-CCC-CCCC----
Q 042944          232 -----------------SLPDIT--EFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQ-LWG-SLP-DLSV----  285 (637)
Q Consensus       232 -----------------~~~~~~--~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~-~~~~----  285 (637)
                                       .++.+.  .+++|++|++++|.+.+..|..+.++++|++|++++|+ +++ ..+ .+..    
T Consensus       222 ~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~  301 (636)
T 4eco_A          222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADA  301 (636)
T ss_dssp             GBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHS
T ss_pred             cccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhcc
Confidence                             455566  77788888888888777777788888888888888887 654 222 2322    


Q ss_pred             --CCCCCEEEccCCcCCCCChh--hhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCc
Q 042944          286 --FPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQ  361 (637)
Q Consensus       286 --~~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  361 (637)
                        +++|++|++++|.++ .+|.  .+..+++|+.|++++|.+.+.++  .+..+++|++|++++|.+. ..+..+..+++
T Consensus       302 ~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~  377 (636)
T 4eco_A          302 PVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTE  377 (636)
T ss_dssp             GGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred             ccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcc
Confidence              378888888888888 6666  78888888888888888875555  5777888888888888887 55556777777


Q ss_pred             -eeEEeccCCcCCCCccccccCCC--CccEEEeeCCCCCCccchhhhh------cCCCccEEECCCCcCCCcccccccCC
Q 042944          362 -LESIGLLHCKLGPHFPKWLQSQK--NYYFLDISDTEISDAVPSWFWD------LSPNLYYLNLSHNHLEGTVLDLSLNY  432 (637)
Q Consensus       362 -L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~i~~~~~~~~~~------~~~~L~~L~l~~n~i~~~~~~~~~~~  432 (637)
                       |++|++++|.+. .+|.++...+  +|+.|++++|.+.+..|..+..      .+++|++|++++|.++......+..+
T Consensus       378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l  456 (636)
T 4eco_A          378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG  456 (636)
T ss_dssp             TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT
T ss_pred             cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccC
Confidence             888888888887 6677776654  8999999999988877666541      23689999999999986666666678


Q ss_pred             CCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhh--ccCCCcEEec
Q 042944          433 AGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLL--RWQALAVLNL  510 (637)
Q Consensus       433 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l  510 (637)
                      ++|+.|++++|.+....+..+...... +              ...++|+.|++++|.++ .+|..+.  .+++|+.|++
T Consensus       457 ~~L~~L~Ls~N~l~~i~~~~~~~~~~~-~--------------~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L  520 (636)
T 4eco_A          457 SPLSSINLMGNMLTEIPKNSLKDENEN-F--------------KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDL  520 (636)
T ss_dssp             CCCSEEECCSSCCSBCCSSSSEETTEE-C--------------TTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCcCHHHhcccccc-c--------------cccCCccEEECcCCcCC-ccChhhhhccCCCcCEEEC
Confidence            888888888887763322222111000 0              00036777777777777 5666665  7788888888


Q ss_pred             cCccCCCCccccccccCCccccCCCCCcEEEc------CCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCC
Q 042944          511 ANNNFSGNFLTFFVGEIPPSLKKCNELKIIDA------GDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLS  584 (637)
Q Consensus       511 ~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~l------s~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~  584 (637)
                      ++|+++         .+|..+..+++|++|++      ++|.+.+.+|..+. .+++|++|+|++|++. .+|..+.  +
T Consensus       521 s~N~l~---------~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~-~ip~~~~--~  587 (636)
T 4eco_A          521 SYNSFS---------KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQIGSNDIR-KVNEKIT--P  587 (636)
T ss_dssp             CSSCCS---------SCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG-GCSSCCEEECCSSCCC-BCCSCCC--T
T ss_pred             CCCCCC---------CcChhhhcCCCCCEEECCCCcccccCcccccChHHHh-cCCCCCEEECCCCcCC-ccCHhHh--C
Confidence            888877         46777777888888888      45667777887777 5888888888888884 7777665  7


Q ss_pred             CCcEeeCCCCcccccc
Q 042944          585 KIQLLDFSLNSISGAI  600 (637)
Q Consensus       585 ~L~~L~ls~n~l~~~~  600 (637)
                      +|+.|++++|++...-
T Consensus       588 ~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          588 NISVLDIKDNPNISID  603 (636)
T ss_dssp             TCCEEECCSCTTCEEE
T ss_pred             cCCEEECcCCCCcccc
Confidence            8888888888777543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4.4e-41  Score=371.07  Aligned_cols=507  Identities=21%  Similarity=0.230  Sum_probs=354.4

Q ss_pred             CCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCC
Q 042944           89 SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQ  168 (637)
Q Consensus        89 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~  168 (637)
                      ++++|+|++|.|+.+.+   ..|.++++|++|+|++|.++...+.+|..+ ++|++|+|++|+++ .++.++|.++++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~---~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L-~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQ-SLALGAFSGLSSLQ  127 (635)
T ss_dssp             TCCEEECTTSCCCEECT---TTTTTCTTCCEEECTTCCCCEECTTTTTTC-TTCCEEECTTCCCC-EECGGGGTTCTTCC
T ss_pred             CCCEEEeeCCCCCCCCH---HHHhCCCCCCEEECCCCcCCCcChhHhcCC-CCCCEEEccCCcCC-CCCHHHhcCCCCCC
Confidence            67777777777777654   445666777777777777776555555555 77777777777776 67666777777777


Q ss_pred             EEEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCC-CchhHhhhcccCCCCcccEEEcCCCCCCCCcC-CcccCC----C
Q 042944          169 HLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTG-QLPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DITEFS----S  241 (637)
Q Consensus       169 ~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~----~  241 (637)
                      +|++++|+++.++. .|+++++|++|++++|.+.. ..|..+..++     +|++|++++|.+....+ .+..+.    .
T Consensus       128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~l~~L~~l~~~  202 (635)
T 4g8a_A          128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-----NLEHLDLSSNKIQSIYCTDLRVLHQMPLL  202 (635)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-----TCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred             EEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch-----hhhhhcccCccccccccccccchhhhhhh
Confidence            77777777777654 47777777777777777754 3456666676     77777777777765433 232222    3


Q ss_pred             ccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCC--CCCCCCCCCCEEEccCCc------CCCCChhhhcCCCCC
Q 042944          242 LQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL--PDLSVFPFLTRLDVSDSR------LNGTVSEGLGRLSKL  313 (637)
Q Consensus       242 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~------~~~~~~~~l~~l~~L  313 (637)
                      ...++++.|.+....+..+. ...++.+++.+|......  ..+..++.++...+..+.      +.......+..+..+
T Consensus       203 ~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l  281 (635)
T 4g8a_A          203 NLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL  281 (635)
T ss_dssp             CCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred             hhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence            34667777776644443333 334566666665432110  112224444444332221      111222233334444


Q ss_pred             CEEecCCCcCCCc--cchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEe
Q 042944          314 EFLDLFGNSLEGM--ITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDI  391 (637)
Q Consensus       314 ~~L~l~~n~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l  391 (637)
                      ....+..+.....  .....+....+++.+++..+.+.....  +.....++.+++.+|.+....+   ..++.|+.+++
T Consensus       282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l  356 (635)
T 4g8a_A          282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTF  356 (635)
T ss_dssp             EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEE
T ss_pred             hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccchhhhhhhcccccccCcCc---ccchhhhhccc
Confidence            4444443322211  111235556778888888887764433  3445678899999988765433   34577888999


Q ss_pred             eCCCCCCccchhhhhcCCCccEEECCCCcCCCc--ccccccCCCCCCeEeCCCCcCcCCCCC--CCCCccEEEccccccc
Q 042944          392 SDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGT--VLDLSLNYAGYPGIDLSSNDFEGPVPP--VPGNVTSLNLSNNKFS  467 (637)
Q Consensus       392 ~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~L~~n~l~  467 (637)
                      ..|.+......  . .+++|+.+++++|.+...  .+.......+|+.+++..+......+.  .+++|+.+++.++...
T Consensus       357 ~~n~~~~~~~~--~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~  433 (635)
T 4g8a_A          357 TSNKGGNAFSE--V-DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK  433 (635)
T ss_dssp             ESCCSCCBCCC--C-BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEE
T ss_pred             ccccCCCCccc--c-cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccc
Confidence            88877654332  2 248999999999988643  344556788999999999877654433  3789999999999887


Q ss_pred             CcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcc
Q 042944          468 GPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKF  547 (637)
Q Consensus       468 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l  547 (637)
                      ...+...+...++++.+++++|.+....+..+..+++|+.|++++|.+.+.       ..|..+..+++|++|++++|++
T Consensus       434 ~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~-------~~~~~~~~l~~L~~L~Ls~N~L  506 (635)
T 4g8a_A          434 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN-------FLPDIFTELRNLTFLDLSQCQL  506 (635)
T ss_dssp             STTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG-------EECSCCTTCTTCCEEECTTSCC
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccc-------cCchhhhhccccCEEECCCCcc
Confidence            777666666669999999999999988889999999999999999986522       4567788999999999999999


Q ss_pred             cccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccccc-ccceeeccCCCeeEE
Q 042944          548 SGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNL-TAMVEKASSNSTITH  622 (637)
Q Consensus       548 ~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~l~l~~n~l~~  622 (637)
                      ++..|..+. ++++|++|+|++|++++..|..|..+++|++||+++|++++..|+.|..+ ++|++|++++|+++.
T Consensus       507 ~~l~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          507 EQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CEECTTTTT-TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCcChHHHc-CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            855555554 79999999999999997778889999999999999999999999999988 689999999999853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.2e-41  Score=377.62  Aligned_cols=385  Identities=18%  Similarity=0.200  Sum_probs=254.0

Q ss_pred             CcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC------------------CcCCcc--cCCCccEEEccCCcCCCCCC
Q 042944          198 NNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG------------------SLPDIT--EFSSLQELHLFDNKLDGSFP  257 (637)
Q Consensus       198 n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~------------------~~~~~~--~~~~L~~L~l~~n~i~~~~~  257 (637)
                      |.+++ +|..+++++     +|+.|++++|.++.                  .++.+.  .+++|++|++++|.+.+..|
T Consensus       435 N~L~~-IP~~l~~L~-----~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP  508 (876)
T 4ecn_A          435 NRITF-ISKAIQRLT-----KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP  508 (876)
T ss_dssp             CEEEE-ECGGGGGCT-----TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC
T ss_pred             Ccccc-hhHHHhcCC-----CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh
Confidence            45554 566666666     66666666666665                  444554  66777777777777666666


Q ss_pred             CcCCCCCCCcEEEcCCCC-CCC-CCC--------CCCCCCCCCEEEccCCcCCCCChh--hhcCCCCCCEEecCCCcCCC
Q 042944          258 EKFRKPSPLVILNLDGNQ-LWG-SLP--------DLSVFPFLTRLDVSDSRLNGTVSE--GLGRLSKLEFLDLFGNSLEG  325 (637)
Q Consensus       258 ~~l~~l~~L~~L~l~~~~-~~~-~~~--------~~~~~~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~  325 (637)
                      ..+.++++|+.|++++|+ +.+ ..+        .+..+++|++|++++|.+. .+|.  .+..+++|+.|++++|.+. 
T Consensus       509 ~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-  586 (876)
T 4ecn_A          509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-  586 (876)
T ss_dssp             GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-
T ss_pred             HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-
Confidence            667777777777777776 543 121        2223456777777777766 5555  6667777777777777666 


Q ss_pred             ccchhhhcCCCCCcEEEccCCcccccccCCCCCCCc-eeEEeccCCcCCCCccccccCCCC--ccEEEeeCCCCCCccch
Q 042944          326 MITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQ-LESIGLLHCKLGPHFPKWLQSQKN--YYFLDISDTEISDAVPS  402 (637)
Q Consensus       326 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~n~i~~~~~~  402 (637)
                      .++  .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. .+|.++...+.  |+.|++++|.+.+..+.
T Consensus       587 ~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          587 HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcccc
Confidence            233  4666677777777777666 44444555555 666666666665 45555554433  66666666666554332


Q ss_pred             hh---hh-cCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccC
Q 042944          403 WF---WD-LSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISG  478 (637)
Q Consensus       403 ~~---~~-~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~  478 (637)
                      ..   .. ..++|++|++++|.++......+..+++|+.|++++|.+.......+.....               ....+
T Consensus       663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~---------------~l~nl  727 (876)
T 4ecn_A          663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG---------------NYKNT  727 (876)
T ss_dssp             CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS---------------CCTTG
T ss_pred             chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccc---------------ccccc
Confidence            11   00 1135666666666666444343445555555555555554221111110000               00001


Q ss_pred             CCccEEeCCCCCCcccCchhhh--ccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCC------Cccccc
Q 042944          479 EYFSYLDVSDNLLSGELPDCLL--RWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGD------NKFSGT  550 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~------n~l~~~  550 (637)
                      ++|+.|++++|.++ .+|..+.  .+++|+.|++++|+++         .+|..+..+++|+.|++++      |.+.+.
T Consensus       728 ~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~---------~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~  797 (876)
T 4ecn_A          728 YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS---------SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ  797 (876)
T ss_dssp             GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCS---------SCCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred             CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCC---------ccchhhhcCCCCCEEECCCCCCccccccccc
Confidence            37888888888888 6777776  8899999999999988         5777888899999999976      777778


Q ss_pred             CChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEEE
Q 042944          551 IPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHI  623 (637)
Q Consensus       551 ~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~  623 (637)
                      +|..+. .+++|+.|+|++|++ +.+|..+.  ++|+.|||++|++....+..+.....+..+.+.+|+++.|
T Consensus       798 ip~~l~-~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I  866 (876)
T 4ecn_A          798 WPTGIT-TCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI  866 (876)
T ss_dssp             CCTTGG-GCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEE
T ss_pred             ChHHHh-cCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcccc
Confidence            888887 699999999999999 48888765  6999999999999988888888888888888888888776

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.6e-40  Score=368.72  Aligned_cols=437  Identities=16%  Similarity=0.199  Sum_probs=316.7

Q ss_pred             CCCCEEEcCCCcccc-hhhhcCCCCCCcEEEc-CCCcCCCCchhHhhhcc-cCCCC---cccE--------E--------
Q 042944          165 TALQHLNLSLNQISA-ISKSFGNMCGLKTLHL-FDNNLTGQLPELFLNLS-GCSKN---SLEI--------L--------  222 (637)
Q Consensus       165 ~~L~~L~L~~n~l~~-l~~~~~~l~~L~~L~l-~~n~i~~~~~~~l~~l~-~~~~~---~L~~--------L--------  222 (637)
                      .+++.|+|+++.+.. +|..++++++|++|++ ++|.+.+..+....... .....   .++.        .        
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            578889999998885 7888899999999999 77765433111000000 00000   0000        0        


Q ss_pred             ----EcCCCCCCCCcCCcccCCCccEEEccC--CcCCCCCCCcCCCCCCCcEEEcCCCCCCC------------------
Q 042944          223 ----KLGGNKLTGSLPDITEFSSLQELHLFD--NKLDGSFPEKFRKPSPLVILNLDGNQLWG------------------  278 (637)
Q Consensus       223 ----~l~~n~~~~~~~~~~~~~~L~~L~l~~--n~i~~~~~~~l~~l~~L~~L~l~~~~~~~------------------  278 (637)
                          .+..+... ..........++.+.+..  |.+++ .|..+.++++|+.|++++|.+.+                  
T Consensus       403 l~~~~l~~~~~~-~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          403 LLQDAINRNPEM-KPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHTCTTS-CCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhhCccc-cccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                00000000 000001112333333333  56665 66778888888888888888876                  


Q ss_pred             CCCCCC--CCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCc-CCC-ccchh------hhcCCCCCcEEEccCCcc
Q 042944          279 SLPDLS--VFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNS-LEG-MITES------HVSNLSKLKYMDFSFNSL  348 (637)
Q Consensus       279 ~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~------~~~~l~~L~~L~l~~n~~  348 (637)
                      .+..+.  .+++|++|++++|.+.+.+|..+..+++|+.|++++|. +++ .+|..      .+..+++|+.|++++|.+
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            555555  68888888888888877888888888888888888887 665 34431      223455888888888888


Q ss_pred             cccccC--CCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCC-ccEEECCCCcCCCcc
Q 042944          349 ALNFSF--GWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPN-LYYLNLSHNHLEGTV  425 (637)
Q Consensus       349 ~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~-L~~L~l~~n~i~~~~  425 (637)
                      . ..+.  .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. ..|..+... ++ |++|++++|.++ .+
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l-~~~L~~L~Ls~N~L~-~l  634 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAF-TDQVEGLGFSHNKLK-YI  634 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEE-CTTCCEEECCSSCCC-SC
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhc-cccCCEEECcCCCCC-cC
Confidence            8 5555  6778888888888888887 666 7888888888888888888 566666655 56 888888888887 55


Q ss_pred             cccccCCC--CCCeEeCCCCcCcCCCCCC--------CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccC
Q 042944          426 LDLSLNYA--GYPGIDLSSNDFEGPVPPV--------PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGEL  495 (637)
Q Consensus       426 ~~~~~~~~--~L~~L~l~~n~~~~~~~~~--------~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  495 (637)
                      +..+...+  +|+.|++++|.+.+..|..        .++|++|++++|+++.. +...+...++|+.|++++|.++ .+
T Consensus       635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l-p~~~~~~l~~L~~L~Ls~N~L~-~i  712 (876)
T 4ecn_A          635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNNLMT-SI  712 (876)
T ss_dssp             CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC-CHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred             chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc-CHHHHccCCCCCEEECCCCcCC-cc
Confidence            56565554  4888999988887755432        24899999999999844 4333333489999999999998 55


Q ss_pred             chhhh--------ccCCCcEEeccCccCCCCccccccccCCcccc--CCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 042944          496 PDCLL--------RWQALAVLNLANNNFSGNFLTFFVGEIPPSLK--KCNELKIIDAGDNKFSGTIPAWIGDTLPKLAIL  565 (637)
Q Consensus       496 ~~~l~--------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~--~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L  565 (637)
                      |..+.        ++++|+.|+|++|+++         .+|..+.  .+++|+.|++++|.++ .+|..++ .+++|+.|
T Consensus       713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~---------~lp~~l~~~~l~~L~~L~Ls~N~L~-~lp~~l~-~L~~L~~L  781 (876)
T 4ecn_A          713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT---------SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPL-NSSQLKAF  781 (876)
T ss_dssp             CTTSSSCTTSCCTTGGGCCEEECCSSCCC---------CCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGG-GCTTCCEE
T ss_pred             ChHHhccccccccccCCccEEECCCCCCc---------cchHHhhhccCCCcCEEEeCCCCCC-ccchhhh-cCCCCCEE
Confidence            54433        2349999999999998         6788876  8999999999999998 5898888 69999999


Q ss_pred             eccC------ccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEEEEE
Q 042944          566 SLRS------NQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITHIYV  625 (637)
Q Consensus       566 ~L~~------n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~~~~  625 (637)
                      +|++      |++.+.+|..+..+++|+.|+|++|++ +.+|..+.  ++|+.|++++|++..+..
T Consensus       782 ~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             ECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred             ECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence            9977      778888999999999999999999999 68898877  699999999999988763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.3e-40  Score=360.29  Aligned_cols=454  Identities=19%  Similarity=0.174  Sum_probs=299.1

Q ss_pred             CCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcE
Q 042944          114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKT  192 (637)
Q Consensus       114 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~  192 (637)
                      +...+++++++|.++. .|..+   .++|++|++++|.+. .++..+|.++++|++|++++|+++.+ |..|.++++|++
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~---~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDL---PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTS---CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             cCCCcEEEcCCCCCcc-CCCCC---CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            4556899999999985 44433   378999999999998 77766899999999999999999997 678999999999


Q ss_pred             EEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCc--CCcccCCCccEEEccCCcCCCCCCCcCCCCCCC--cE
Q 042944          193 LHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSL--PDITEFSSLQELHLFDNKLDGSFPEKFRKPSPL--VI  268 (637)
Q Consensus       193 L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L--~~  268 (637)
                      |++++|.+. ..|..  .++     +|++|++++|.+....  ..+..+++|++|++++|.++..   .+..+++|  +.
T Consensus       105 L~Ls~N~l~-~lp~~--~l~-----~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~  173 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC--PMA-----SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSC  173 (562)
T ss_dssp             EECTTSCCC-EECSC--CCT-----TCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEE
T ss_pred             EECCCCcCC-ccCcc--ccc-----cCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeE
Confidence            999999998 45544  566     9999999999988643  4688899999999999998753   34444555  99


Q ss_pred             EEcCCCCC--CCCCCCCCC-CC-CCCEEEccCCcCCCCCh-hhhcCCCCCCEEecCCCcCCCc---cchhhhcCCCCCcE
Q 042944          269 LNLDGNQL--WGSLPDLSV-FP-FLTRLDVSDSRLNGTVS-EGLGRLSKLEFLDLFGNSLEGM---ITESHVSNLSKLKY  340 (637)
Q Consensus       269 L~l~~~~~--~~~~~~~~~-~~-~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~l~~L~~  340 (637)
                      |++++|.+  ....+.... +. ..-.+++++|.+.+..+ ..+..+++|+.+++++|.....   .....+..+++|+.
T Consensus       174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~  253 (562)
T 3a79_B          174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN  253 (562)
T ss_dssp             EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred             EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence            99999988  544333222 22 12256778887765333 3456778899999998852100   01124677888888


Q ss_pred             EEccCCcccccccC---CCCCCCceeEEeccCCcCCCCccccc-----cCCCCccEEEeeCCCCCCccchhhhhc--CCC
Q 042944          341 MDFSFNSLALNFSF---GWLPPFQLESIGLLHCKLGPHFPKWL-----QSQKNYYFLDISDTEISDAVPSWFWDL--SPN  410 (637)
Q Consensus       341 L~l~~n~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~i~~~~~~~~~~~--~~~  410 (637)
                      +++.++.+......   ......+|++|++++|.+.+..|..+     ..++.|+.+++..+.+ .....++...  .++
T Consensus       254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~  332 (562)
T 3a79_B          254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMN  332 (562)
T ss_dssp             EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCC
T ss_pred             EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCc
Confidence            88888766532211   11123489999999998887777766     6677777777777776 2222333222  156


Q ss_pred             ccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCccccc-ccccCCCccEEeC
Q 042944          411 LYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSL-CSISGEYFSYLDV  486 (637)
Q Consensus       411 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~-~~~~~~~L~~L~l  486 (637)
                      |++|++++|.+.....  ...+++|++|++++|.+.+..+..   +++|++|++++|++++..... .....++|+.|++
T Consensus       333 L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l  410 (562)
T 3a79_B          333 IKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV  410 (562)
T ss_dssp             CSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred             ceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence            8888888888754321  256677777777777777655433   456666666666665432111 1122266666666


Q ss_pred             CCCCCcccCc-hhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 042944          487 SDNLLSGELP-DCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAIL  565 (637)
Q Consensus       487 ~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L  565 (637)
                      ++|.+++.+| ..+..+++|++|++++|++++        .+|..+.  ++|++|++++|.++ .+|..++ .+++|++|
T Consensus       411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~-~l~~L~~L  478 (562)
T 3a79_B          411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTG--------SVFRCLP--PKVKVLDLHNNRIM-SIPKDVT-HLQALQEL  478 (562)
T ss_dssp             TTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG--------GGGSSCC--TTCSEEECCSSCCC-CCCTTTT-SSCCCSEE
T ss_pred             CCCcCCCccChhhhcCcccCCEEECCCCCCCc--------chhhhhc--CcCCEEECCCCcCc-ccChhhc-CCCCCCEE
Confidence            6666665233 335556666666666666552        2222221  45666666666665 5666555 46666666


Q ss_pred             eccCccccccCCcc-ccCCCCCcEeeCCCCccccc
Q 042944          566 SLRSNQFHGSIPRN-LCRLSKIQLLDFSLNSISGA  599 (637)
Q Consensus       566 ~L~~n~~~~~~~~~-l~~l~~L~~L~ls~n~l~~~  599 (637)
                      +|++|+++ .+|.. +..+++|+.|++++|++.+.
T Consensus       479 ~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             ECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             ECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            66666666 44444 56666666666666666543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.5e-39  Score=356.99  Aligned_cols=523  Identities=17%  Similarity=0.153  Sum_probs=395.1

Q ss_pred             eeeeeccccccccccCchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCcc
Q 042944           39 LTMYRREQVELAISPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLT  118 (637)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~  118 (637)
                      |.......++..+++     .++.|+|++|.+..+.+      ..|..+++|++|+|++|.++.+.+   .+|.++++|+
T Consensus        38 c~~~~l~~vP~~lp~-----~~~~LdLs~N~i~~l~~------~~f~~l~~L~~L~Ls~N~i~~i~~---~~f~~L~~L~  103 (635)
T 4g8a_A           38 CMELNFYKIPDNLPF-----STKNLDLSFNPLRHLGS------YSFFSFPELQVLDLSRCEIQTIED---GAYQSLSHLS  103 (635)
T ss_dssp             CTTSCCSSCCSSSCT-----TCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTCCCCEECT---TTTTTCTTCC
T ss_pred             CCCCCcCccCCCCCc-----CCCEEEeeCCCCCCCCH------HHHhCCCCCCEEECCCCcCCCcCh---hHhcCCCCCC
Confidence            333344445544432     35679999998765432      358899999999999999998875   5577789999


Q ss_pred             EEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccc--hhhhcCCCCCCcEEEcC
Q 042944          119 LLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA--ISKSFGNMCGLKTLHLF  196 (637)
Q Consensus       119 ~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~l~  196 (637)
                      +|+|++|+++...+..|..+ ++|++|++++|.++ .++...|+++++|++|++++|.+..  +|..+..+++|++|+++
T Consensus       104 ~L~Ls~N~l~~l~~~~f~~L-~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          104 TLILTGNPIQSLALGAFSGL-SSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             EEECTTCCCCEECGGGGTTC-TTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             EEEccCCcCCCCCHHHhcCC-CCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence            99999999997666666666 99999999999998 8887789999999999999999987  57889999999999999


Q ss_pred             CCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCC-CCCCcCCCCCCCcEEEcCCCC
Q 042944          197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDG-SFPEKFRKPSPLVILNLDGNQ  275 (637)
Q Consensus       197 ~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~~~  275 (637)
                      +|.+.+..+..+..+..... ....++++.|.+....+.......++.+++.+|.... ..+..+..+..++...+..+.
T Consensus       182 ~N~l~~~~~~~l~~L~~l~~-~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~  260 (635)
T 4g8a_A          182 SNKIQSIYCTDLRVLHQMPL-LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE  260 (635)
T ss_dssp             SSCCCEECGGGGHHHHTCTT-CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred             Cccccccccccccchhhhhh-hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccc
Confidence            99999888888887762211 3457899999998766666666678889998876442 222345566667666553322


Q ss_pred             CC------CC-CCCCCCCCCCCEEEccCCcCCC---CChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccC
Q 042944          276 LW------GS-LPDLSVFPFLTRLDVSDSRLNG---TVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSF  345 (637)
Q Consensus       276 ~~------~~-~~~~~~~~~L~~L~l~~n~~~~---~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  345 (637)
                      ..      .. ...+.....+....+..+....   .....+..+.+++.+.+.++.+....   .+.....++.|++.+
T Consensus       261 ~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---~~~~~~~L~~L~l~~  337 (635)
T 4g8a_A          261 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVN  337 (635)
T ss_dssp             CTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG---GGGSCCCCSEEEEES
T ss_pred             cccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc---ccccchhhhhhhccc
Confidence            21      11 1122224555555554443321   22334556778999999888876532   356678899999999


Q ss_pred             CcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCcc--chhhhhcCCCccEEECCCCcCCC
Q 042944          346 NSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAV--PSWFWDLSPNLYYLNLSHNHLEG  423 (637)
Q Consensus       346 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~--~~~~~~~~~~L~~L~l~~n~i~~  423 (637)
                      |.+.....   ..+..++.+.+..+.....  .....+++|+.++++.|.+....  +..... ..+|+.+++..+.+..
T Consensus       338 ~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~~~~~~~~~  411 (635)
T 4g8a_A          338 CKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG-TISLKYLDLSFNGVIT  411 (635)
T ss_dssp             CEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHS-CSCCCEEECCSCSEEE
T ss_pred             ccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhh-hhhhhhhhcccccccc
Confidence            98865443   3456788888888876543  33457899999999999886543  333333 4799999999988764


Q ss_pred             cccccccCCCCCCeEeCCCCcCcCCCCC----CCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCc-ccCchh
Q 042944          424 TVLDLSLNYAGYPGIDLSSNDFEGPVPP----VPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLS-GELPDC  498 (637)
Q Consensus       424 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~  498 (637)
                       .+..+..++.|+.++++.+......+.    .+.+++.++++.|.+....+...... +.++.|++++|... ...|..
T Consensus       412 -~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~  489 (635)
T 4g8a_A          412 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDI  489 (635)
T ss_dssp             -ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSC
T ss_pred             -ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc-hhhhhhhhhhcccccccCchh
Confidence             344577899999999999987655443    36789999999999987766554433 89999999999754 457788


Q ss_pred             hhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCc
Q 042944          499 LLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPR  578 (637)
Q Consensus       499 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~  578 (637)
                      |..+++|+.|++++|++++        ..|..+..+++|++|++++|+++ .++...++.+++|+.|+|++|++++..|.
T Consensus       490 ~~~l~~L~~L~Ls~N~L~~--------l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~  560 (635)
T 4g8a_A          490 FTELRNLTFLDLSQCQLEQ--------LSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  560 (635)
T ss_dssp             CTTCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEECTTSCCC-BCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred             hhhccccCEEECCCCccCC--------cChHHHcCCCCCCEEECCCCcCC-CCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence            9999999999999999883        34667889999999999999998 55555555799999999999999988888


Q ss_pred             cccCC-CCCcEeeCCCCcccc
Q 042944          579 NLCRL-SKIQLLDFSLNSISG  598 (637)
Q Consensus       579 ~l~~l-~~L~~L~ls~n~l~~  598 (637)
                      .+..+ ++|+.|++++|++..
T Consensus       561 ~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          561 ELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CTTCCCTTCCEEECTTCCBCC
T ss_pred             HHHhhhCcCCEEEeeCCCCcc
Confidence            99888 689999999999974

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=9.5e-40  Score=353.63  Aligned_cols=456  Identities=20%  Similarity=0.196  Sum_probs=359.3

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCC
Q 042944           86 SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMT  165 (637)
Q Consensus        86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~  165 (637)
                      .+...++++++++.++.++    ..+.  ++|++|++++|.+.+..+..+..+ ++|++|++++|.++ .++..+|.+++
T Consensus        29 ~~~~~~~l~ls~~~L~~ip----~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~-~~~~~~~~~l~  100 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVP----KDLP--PRTKALSLSQNSISELRMPDISFL-SELRVLRLSHNRIR-SLDFHVFLFNQ  100 (562)
T ss_dssp             ----CCEEECTTSCCCSCC----TTSC--TTCCEEECCSSCCCCCCGGGTTTC-TTCCEEECCSCCCC-EECTTTTTTCT
T ss_pred             ccCCCcEEEcCCCCCccCC----CCCC--CCcCEEECCCCCccccChhhhccC-CCccEEECCCCCCC-cCCHHHhCCCC
Confidence            4455699999999999874    3332  899999999999998777777777 99999999999998 66555899999


Q ss_pred             CCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCC-chhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCc--
Q 042944          166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQ-LPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSL--  242 (637)
Q Consensus       166 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L--  242 (637)
                      +|++|++++|+++.+|..  .+++|++|++++|.+.+. .|..|++++     +|++|++++|.+..  ..+..+++|  
T Consensus       101 ~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~-----~L~~L~L~~n~l~~--~~~~~l~~L~L  171 (562)
T 3a79_B          101 DLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT-----KLTFLGLSAAKFRQ--LDLLPVAHLHL  171 (562)
T ss_dssp             TCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT-----TCCEEEEECSBCCT--TTTGGGTTSCE
T ss_pred             CCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccC-----cccEEecCCCcccc--Cchhhhhhcee
Confidence            999999999999999877  899999999999999863 468999998     99999999999875  345566666  


Q ss_pred             cEEEccCCcC--CCCCCCcCCCCC-CCcEEEcCCCCCCCCCCC--CCCCCCCCEEEccCCcCC----CCChhhhcCCCCC
Q 042944          243 QELHLFDNKL--DGSFPEKFRKPS-PLVILNLDGNQLWGSLPD--LSVFPFLTRLDVSDSRLN----GTVSEGLGRLSKL  313 (637)
Q Consensus       243 ~~L~l~~n~i--~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~----~~~~~~l~~l~~L  313 (637)
                      ++|++++|.+  ++..+..+..+. ..-.+++++|.+....+.  +..+++|+.+++++|...    ......+..+++|
T Consensus       172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L  251 (562)
T 3a79_B          172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL  251 (562)
T ss_dssp             EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSC
T ss_pred             eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcc
Confidence            9999999998  777777776654 122567788887654433  234788999999998521    0223456788999


Q ss_pred             CEEecCCCcCCCccchh--hhcCCCCCcEEEccCCcccccccCCC-----CCCCceeEEeccCCcCCCCcc-cccc---C
Q 042944          314 EFLDLFGNSLEGMITES--HVSNLSKLKYMDFSFNSLALNFSFGW-----LPPFQLESIGLLHCKLGPHFP-KWLQ---S  382 (637)
Q Consensus       314 ~~L~l~~n~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~-~~l~---~  382 (637)
                      +.++++++.+.+.....  .....++|++|++++|.+....+..+     ..+..|+.+++..+.+  .+| .++.   .
T Consensus       252 ~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~  329 (562)
T 3a79_B          252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFA  329 (562)
T ss_dssp             EEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHH
T ss_pred             eEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhc
Confidence            99999888766432111  12234599999999999986666655     5666677777776665  333 2222   2


Q ss_pred             CCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCC-----CCCCCCcc
Q 042944          383 QKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPV-----PPVPGNVT  457 (637)
Q Consensus       383 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~  457 (637)
                      ..+|+.|++++|.+.....   ...+++|++|++++|.+++..+..+..+++|+.|++++|++.+..     ...+++|+
T Consensus       330 ~~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~  406 (562)
T 3a79_B          330 EMNIKMLSISDTPFIHMVC---PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE  406 (562)
T ss_dssp             TCCCSEEEEESSCCCCCCC---CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred             cCcceEEEccCCCcccccC---ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence            3679999999999865432   134589999999999999988888999999999999999998743     24478999


Q ss_pred             EEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCC
Q 042944          458 SLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNEL  537 (637)
Q Consensus       458 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L  537 (637)
                      +|++++|++++.++...+...++|++|++++|.+++..+..+.  ++|+.|++++|+++         .+|..+..+++|
T Consensus       407 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~---------~ip~~~~~l~~L  475 (562)
T 3a79_B          407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM---------SIPKDVTHLQAL  475 (562)
T ss_dssp             EEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC---------CCCTTTTSSCCC
T ss_pred             EEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc---------ccChhhcCCCCC
Confidence            9999999999855554444559999999999999876666554  79999999999998         788888899999


Q ss_pred             cEEEcCCCcccccCChhhhhcCCCCcEEeccCcccccc
Q 042944          538 KIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS  575 (637)
Q Consensus       538 ~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~  575 (637)
                      ++|++++|+++ .+|...+..+++|+.|++++|++...
T Consensus       476 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          476 QELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             SEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            99999999998 88887455799999999999998754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.3e-37  Score=321.46  Aligned_cols=390  Identities=25%  Similarity=0.286  Sum_probs=162.9

Q ss_pred             CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccc-hhhhcCCCCCC-------------cEEEcCCCcCCCCch
Q 042944          140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGL-------------KTLHLFDNNLTGQLP  205 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~l~~L-------------~~L~l~~n~i~~~~~  205 (637)
                      .+|++|++++|.+ +.+|. .++++++|++|++++|++.. +|..++.+.+|             ++|++++|.+++ .|
T Consensus        11 ~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp   87 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP   87 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred             ccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence            7899999999999 49988 78999999999999998874 78888888776             666666665553 22


Q ss_pred             hHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCC
Q 042944          206 ELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSV  285 (637)
Q Consensus       206 ~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  285 (637)
                      ..   .+     +|++|++++|.+...+.   ..++|++|++++|.+++.. ..   .++|++|++++|.+.+ .+.+..
T Consensus        88 ~~---~~-----~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~l~-~~---~~~L~~L~L~~n~l~~-lp~~~~  151 (454)
T 1jl5_A           88 EL---PP-----HLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKALS-DL---PPLLEYLGVSNNQLEK-LPELQN  151 (454)
T ss_dssp             SC---CT-----TCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC-SC---CTTCCEEECCSSCCSS-CCCCTT
T ss_pred             CC---cC-----CCCEEEccCCcCCcccc---ccCCCcEEECCCCccCccc-CC---CCCCCEEECcCCCCCC-CcccCC
Confidence            21   12     56666666665554221   1245666666666555321 11   1456666666665554 224444


Q ss_pred             CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEE
Q 042944          286 FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESI  365 (637)
Q Consensus       286 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  365 (637)
                      +++|++|++++|.+++ +|..   .++|+.|++++|.+.+ .+  .+.++++|++|++++|.+.....    ...+|++|
T Consensus       152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L  220 (454)
T 1jl5_A          152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLPD----LPLSLESI  220 (454)
T ss_dssp             CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCCC----CCTTCCEE
T ss_pred             CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCCC----CcCcccEE
Confidence            5566666666665553 2221   2355666666665554 22  25555556666666555543111    11345555


Q ss_pred             eccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcC
Q 042944          366 GLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDF  445 (637)
Q Consensus       366 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~  445 (637)
                      ++++|.+. .+|. +..+++|++|++++|.+.+.. .    .+++|++|++++|.+++. +.   ..++|+.|++++|.+
T Consensus       221 ~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~-~----~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l  289 (454)
T 1jl5_A          221 VAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLP-D----LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIF  289 (454)
T ss_dssp             ECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCC-S----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCC
T ss_pred             ECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccc-c----cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCcc
Confidence            55555544 2332 445555555555555554321 1    124555555555554432 11   124445555555544


Q ss_pred             cCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhcc-CCCcEEeccCccCCCCcccccc
Q 042944          446 EGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRW-QALAVLNLANNNFSGNFLTFFV  524 (637)
Q Consensus       446 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~  524 (637)
                      .+. +..+++|++|++++|++++.                          +    .+ ++|+.|++++|+++        
T Consensus       290 ~~l-~~~~~~L~~L~l~~N~l~~i--------------------------~----~~~~~L~~L~Ls~N~l~--------  330 (454)
T 1jl5_A          290 SGL-SELPPNLYYLNASSNEIRSL--------------------------C----DLPPSLEELNVSNNKLI--------  330 (454)
T ss_dssp             SEE-SCCCTTCCEEECCSSCCSEE--------------------------C----CCCTTCCEEECCSSCCS--------
T ss_pred             Ccc-cCcCCcCCEEECcCCcCCcc--------------------------c----CCcCcCCEEECCCCccc--------
Confidence            431 11223444444444444321                          1    11 24455555555444        


Q ss_pred             ccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccc--cCCccccCC-------------CCCcEe
Q 042944          525 GEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHG--SIPRNLCRL-------------SKIQLL  589 (637)
Q Consensus       525 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~--~~~~~l~~l-------------~~L~~L  589 (637)
                       .+|..   +++|++|++++|.++ .+|.    .+++|++|++++|++++  .+|..+..+             ++|+.|
T Consensus       331 -~lp~~---~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L  401 (454)
T 1jl5_A          331 -ELPAL---PPRLERLIASFNHLA-EVPE----LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQL  401 (454)
T ss_dssp             -CCCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------
T ss_pred             -ccccc---CCcCCEEECCCCccc-cccc----hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEE
Confidence             22222   244455555555444 3443    13445555555555444  344444443             788999


Q ss_pred             eCCCCcccc--cccccccccccceeeccCCCeeEEEE
Q 042944          590 DFSLNSISG--AIPKCINNLTAMVEKASSNSTITHIY  624 (637)
Q Consensus       590 ~ls~n~l~~--~~p~~l~~l~~L~~l~l~~n~l~~~~  624 (637)
                      ++++|++++  .+|.      +++.|.+++|.+....
T Consensus       402 ~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~  432 (454)
T 1jl5_A          402 HVETNPLREFPDIPE------SVEDLRMNSERVVDPY  432 (454)
T ss_dssp             -------------------------------------
T ss_pred             ECCCCcCCccccchh------hHhheeCcCcccCCcc
Confidence            999999886  5553      3555667777765443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.7e-37  Score=321.16  Aligned_cols=415  Identities=22%  Similarity=0.199  Sum_probs=204.9

Q ss_pred             CCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCC-------------CcEEECCCCCCC
Q 042944           87 LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSN-------------LLALDLNSNQLA  153 (637)
Q Consensus        87 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~-------------L~~L~L~~n~l~  153 (637)
                      .++|++|++++|.+..+    ++.++++++|++|++++|.+.+..|..+..+ .+             +++|++++|.++
T Consensus        10 ~~~L~~L~l~~n~l~~i----P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l-~~L~~l~l~~c~~~~l~~L~l~~~~l~   84 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLTEM----PVEAENVKSKTEYYNAWSEWERNAPPGNGEQ-REMAVSRLRDCLDRQAHELELNNLGLS   84 (454)
T ss_dssp             ----------------------------CCHHHHHHHHHHHHHTSCTTSCCC-HHHHHHHHHHHHHHTCSEEECTTSCCS
T ss_pred             cccchhhhcccCchhhC----ChhHhcccchhhhhccCCcccccCCcccccc-hhcchhhhhhhhccCCCEEEecCCccc
Confidence            46677777777777444    2556666777777777776655555444433 33             355555555554


Q ss_pred             CCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCc
Q 042944          154 GPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSL  233 (637)
Q Consensus       154 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~  233 (637)
                       .+|.    -.++|++|++++|.++.+|..   .++|++|++++|.+                             ....
T Consensus        85 -~lp~----~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l-----------------------------~~l~  127 (454)
T 1jl5_A           85 -SLPE----LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNL-----------------------------KALS  127 (454)
T ss_dssp             -CCCS----CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCC-----------------------------SCCC
T ss_pred             -cCCC----CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCcc-----------------------------Cccc
Confidence             4443    124555555555555554432   24455555555544                             4211


Q ss_pred             CCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCC
Q 042944          234 PDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKL  313 (637)
Q Consensus       234 ~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L  313 (637)
                      . +  .++|++|++++|.+++ .| .+..+++|++|++++|++.+....   .++|++|++++|.+++ ++ .+..+++|
T Consensus       128 ~-~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L  197 (454)
T 1jl5_A          128 D-L--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFL  197 (454)
T ss_dssp             S-C--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred             C-C--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-cccCCCCC
Confidence            1 1  1345555555555543 22 355555555555555555432211   2356666666666554 23 35556666


Q ss_pred             CEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeC
Q 042944          314 EFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISD  393 (637)
Q Consensus       314 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  393 (637)
                      +.|++++|.+.+. +.    ..++|++|++++|.+... + .+..+++|++|++++|.+.. +|.   ..++|+.|++++
T Consensus       198 ~~L~l~~N~l~~l-~~----~~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~  266 (454)
T 1jl5_A          198 TAIYADNNSLKKL-PD----LPLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRD  266 (454)
T ss_dssp             CEEECCSSCCSSC-CC----CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCS
T ss_pred             CEEECCCCcCCcC-CC----CcCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCC
Confidence            6666666665542 11    124666666666666522 2 35566666666666666653 232   247899999999


Q ss_pred             CCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCccccc
Q 042944          394 TEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSL  473 (637)
Q Consensus       394 n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  473 (637)
                      |.+.+. +.    .+++|++|++++|.+++...    ..++|+.|++++|.+.+. +..+++|++|++++|++++... .
T Consensus       267 N~l~~l-~~----~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~~~~~~L~~L~Ls~N~l~~lp~-~  335 (454)
T 1jl5_A          267 NYLTDL-PE----LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-CDLPPSLEELNVSNNKLIELPA-L  335 (454)
T ss_dssp             SCCSCC-CC----CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-CCCCTTCCEEECCSSCCSCCCC-C
T ss_pred             Cccccc-Cc----ccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-cCCcCcCCEEECCCCccccccc-c
Confidence            998873 32    23799999999999986321    236899999999999874 3445799999999999986332 2


Q ss_pred             ccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCCh
Q 042944          474 CSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPA  553 (637)
Q Consensus       474 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~  553 (637)
                          .++|++|++++|.++ .+|.   .+++|+.|++++|++++..      .+|..+.      .|  +.|.+.+.+|.
T Consensus       336 ----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~------~ip~~l~------~L--~~n~~~~~i~~  393 (454)
T 1jl5_A          336 ----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFP------DIPESVE------DL--RMNSHLAEVPE  393 (454)
T ss_dssp             ----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCC------CCCTTCC------EE--ECCC-------
T ss_pred             ----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCC------CChHHHH------hh--hhccccccccc
Confidence                289999999999998 4565   4789999999999988421      3454433      23  34555556665


Q ss_pred             hhhhcCCCCcEEeccCccccc--cCCccccCCCCCcEeeCCCCccccccccccccc
Q 042944          554 WIGDTLPKLAILSLRSNQFHG--SIPRNLCRLSKIQLLDFSLNSISGAIPKCINNL  607 (637)
Q Consensus       554 ~l~~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l  607 (637)
                          .+++|+.|++++|++++  .+|      .+++.|++++|.+.+..|......
T Consensus       394 ----~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~~  439 (454)
T 1jl5_A          394 ----LPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHETT  439 (454)
T ss_dssp             --------------------------------------------------------
T ss_pred             ----ccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccCHHHh
Confidence                25799999999999985  444      456778899998887776555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-36  Score=321.55  Aligned_cols=364  Identities=21%  Similarity=0.230  Sum_probs=176.9

Q ss_pred             cccEEEcCCCCCCCCc-CCcccCCCccEEEccCCcCCC-CCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEc
Q 042944          218 SLEILKLGGNKLTGSL-PDITEFSSLQELHLFDNKLDG-SFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDV  294 (637)
Q Consensus       218 ~L~~L~l~~n~~~~~~-~~~~~~~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l  294 (637)
                      +|++|++++|.+.... ..+..+++|++|++++|.+.+ ..+..|..+++|++|++++|.+....+. +..+++|++|++
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            6666666666666542 245666666666666666542 2345566666666666666666554333 334666666666


Q ss_pred             cCCcCCCCChhh--hcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCC--CceeEEeccCC
Q 042944          295 SDSRLNGTVSEG--LGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPP--FQLESIGLLHC  370 (637)
Q Consensus       295 ~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~~  370 (637)
                      ++|.+++..+..  +..+++|+.|++++|.+.+..+...+.++++|++|++++|.+....+..+..+  .+++.+++.+|
T Consensus       111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n  190 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI  190 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred             CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence            666665433333  55666666666666666654444345666666666666666655544444333  45666666666


Q ss_pred             cCCCCccccc--------cCCCCccEEEeeCCCCCCccchhhhhcC--CCccEEECCCCcCCCcccccccCCCCCCeEeC
Q 042944          371 KLGPHFPKWL--------QSQKNYYFLDISDTEISDAVPSWFWDLS--PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDL  440 (637)
Q Consensus       371 ~~~~~~~~~l--------~~~~~L~~L~l~~n~i~~~~~~~~~~~~--~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l  440 (637)
                      .+....+.++        ..+++|+.|++++|.+.+..+..+....  ++|+.|++++|...+.... ...++.+...  
T Consensus       191 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~--  267 (455)
T 3v47_A          191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDPDNF--  267 (455)
T ss_dssp             BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCCCTT--
T ss_pred             cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhccCccc--
Confidence            5544333221        2345555555555555554444443321  4555555555544321110 0000000000  


Q ss_pred             CCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCcc
Q 042944          441 SSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFL  520 (637)
Q Consensus       441 ~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  520 (637)
                         .+   .....++|++|++++|++.+..+..... .++|++|++++|.+++..+..|..+++|++|++++|.+++   
T Consensus       268 ---~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---  337 (455)
T 3v47_A          268 ---TF---KGLEASGVKTCDLSKSKIFALLKSVFSH-FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS---  337 (455)
T ss_dssp             ---TT---GGGTTSCCCEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE---
T ss_pred             ---cc---ccccccCceEEEecCccccccchhhccc-CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC---
Confidence               00   0001234444444444444333322211 1445555555555544444444445555555555554431   


Q ss_pred             ccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccc
Q 042944          521 TFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAI  600 (637)
Q Consensus       521 ~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~  600 (637)
                           ..|..+..+++|++|++++|.+++..|..+. .+++|++|+|++|++++..+..+..+++|++|++++|++++..
T Consensus       338 -----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          338 -----IDSRMFENLDKLEVLDLSYNHIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             -----ECGGGGTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             -----cChhHhcCcccCCEEECCCCcccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence                 1123344444555555555555433333333 3455555555555554333333444455555555555554443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-35  Score=313.25  Aligned_cols=376  Identities=18%  Similarity=0.167  Sum_probs=269.3

Q ss_pred             EEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEE
Q 042944          144 ALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEIL  222 (637)
Q Consensus       144 ~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L  222 (637)
                      .++.+++.++ .+|.  +  .++|++|++++|.++.+ |..|.++++|++|++++|.+.+..+                 
T Consensus        14 ~~~c~~~~l~-~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~-----------------   71 (455)
T 3v47_A           14 NAICINRGLH-QVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-----------------   71 (455)
T ss_dssp             EEECCSSCCS-SCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC-----------------
T ss_pred             ccCcCCCCcc-cCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC-----------------
Confidence            4455555554 4544  1  14555555555555553 4445555555555555554431111                 


Q ss_pred             EcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCC-C--CCCCCCCCEEEccCCcC
Q 042944          223 KLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP-D--LSVFPFLTRLDVSDSRL  299 (637)
Q Consensus       223 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~--~~~~~~L~~L~l~~n~~  299 (637)
                                ...+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+ .  +..+++|++|++++|.+
T Consensus        72 ----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l  141 (455)
T 3v47_A           72 ----------NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI  141 (455)
T ss_dssp             ----------TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC
T ss_pred             ----------cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCcc
Confidence                      1235566677777777777777778889999999999999999976322 2  55699999999999999


Q ss_pred             CCCChhh-hcCCCCCCEEecCCCcCCCccchhhhcCC--CCCcEEEccCCcccccccCC--------CCCCCceeEEecc
Q 042944          300 NGTVSEG-LGRLSKLEFLDLFGNSLEGMITESHVSNL--SKLKYMDFSFNSLALNFSFG--------WLPPFQLESIGLL  368 (637)
Q Consensus       300 ~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~--------~~~~~~L~~L~l~  368 (637)
                      .+..+.. +..+++|+.|++++|.+.+..+. .+..+  .+|+.+++++|.+.......        +...++|++|+++
T Consensus       142 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  220 (455)
T 3v47_A          142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLS  220 (455)
T ss_dssp             CSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECT
T ss_pred             CccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccccccCcccccchhhccccccccccccceeeeEecC
Confidence            9876665 78999999999999999875443 45444  78999999999987655433        3356789999999


Q ss_pred             CCcCCCCccccccC---CCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCccccccc--CCCCCCeEeCCCC
Q 042944          369 HCKLGPHFPKWLQS---QKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSL--NYAGYPGIDLSSN  443 (637)
Q Consensus       369 ~~~~~~~~~~~l~~---~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~--~~~~L~~L~l~~n  443 (637)
                      +|.+....+..+..   .++|+.|++++|...+...               ..+.+.+.....+.  ..++|+.|++++|
T Consensus       221 ~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  285 (455)
T 3v47_A          221 GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF---------------GHTNFKDPDNFTFKGLEASGVKTCDLSKS  285 (455)
T ss_dssp             TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT---------------TCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred             CCcccccchhhhhccccccceeeEeecccccccccc---------------chhhhccCcccccccccccCceEEEecCc
Confidence            99998877776644   3899999999987654321               11111111111111  2356777777777


Q ss_pred             cCcCCCCCC---CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCcc
Q 042944          444 DFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFL  520 (637)
Q Consensus       444 ~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  520 (637)
                      .+.+..+..   +++|++|++++|++.+..+.... ..++|++|++++|.+++..+..+..+++|++|++++|++++   
T Consensus       286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---  361 (455)
T 3v47_A          286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA---  361 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE---
T ss_pred             cccccchhhcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc---
Confidence            776655443   56788888888888766554332 23899999999999998888999999999999999999872   


Q ss_pred             ccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCC
Q 042944          521 TFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIP  577 (637)
Q Consensus       521 ~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~  577 (637)
                           ..|..+..+++|++|++++|+++ .+|...+..+++|++|++++|+++...|
T Consensus       362 -----~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          362 -----LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             -----ECTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             -----cChhhccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCcccCCC
Confidence                 34667889999999999999998 6776666679999999999999986665

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=7.6e-36  Score=312.27  Aligned_cols=357  Identities=22%  Similarity=0.226  Sum_probs=193.0

Q ss_pred             cCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCC
Q 042944          111 MNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGL  190 (637)
Q Consensus       111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L  190 (637)
                      ++++++|++|++++|.+++. + .+..+ ++|++|++++|.++ .++   +..+++|++|++++|+++.++  ++++++|
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~-~-~l~~l-~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L  108 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDM-T-GIEKL-TGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKL  108 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCC-T-TGGGC-TTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTC
T ss_pred             hhHcCCCCEEEccCCCcccC-h-hhccc-CCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCceee--cCCCCcC
Confidence            44446666666666666543 2 34444 66666666666665 343   455666666666666666653  5566666


Q ss_pred             cEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEE
Q 042944          191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILN  270 (637)
Q Consensus       191 ~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  270 (637)
                      ++|++++|.+.+. +  +..++     +|++|++++|.++..  .+..+++|++|++++|...+..  .+..+++|+.|+
T Consensus       109 ~~L~L~~N~l~~l-~--~~~l~-----~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  176 (457)
T 3bz5_A          109 TYLNCDTNKLTKL-D--VSQNP-----LLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD  176 (457)
T ss_dssp             CEEECCSSCCSCC-C--CTTCT-----TCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred             CEEECCCCcCCee-c--CCCCC-----cCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence            6666666665532 2  44444     555666655555532  2445555555555555322221  244445555555


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccc
Q 042944          271 LDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLAL  350 (637)
Q Consensus       271 l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  350 (637)
                      +++|.+++..  +..+++|++|++++|.+++.   .+..+++|+.|++++|.+++. +   +..+++|+.|++++|    
T Consensus       177 ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p---~~~l~~L~~L~l~~N----  243 (457)
T 3bz5_A          177 CSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D---VTPLTQLTYFDCSVN----  243 (457)
T ss_dssp             CCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSS----
T ss_pred             CCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C---ccccCCCCEEEeeCC----
Confidence            5555544321  33344455555555444432   134444444444444444431 1   334444444444444    


Q ss_pred             cccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCccccccc
Q 042944          351 NFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSL  430 (637)
Q Consensus       351 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  430 (637)
                                          .+.+..   +..+++|+.|+++.|               +|+++++++|.+.+..+  +.
T Consensus       244 --------------------~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~  283 (457)
T 3bz5_A          244 --------------------PLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AE  283 (457)
T ss_dssp             --------------------CCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CT
T ss_pred             --------------------cCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--cc
Confidence                                443321   334556666665443               45566666666655544  35


Q ss_pred             CCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEec
Q 042944          431 NYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNL  510 (637)
Q Consensus       431 ~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  510 (637)
                      .+++|+.|++++|...+..|....+|+.|++++|              ++|++|++++|++++. +  +..+++|+.|++
T Consensus       284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~--------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l  346 (457)
T 3bz5_A          284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN--------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSC  346 (457)
T ss_dssp             TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC--------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEEC
T ss_pred             ccccCCEEECCCCcccceeccCCCcceEechhhc--------------ccCCEEECCCCccccc-c--cccCCcCcEEEC
Confidence            6677777777777766655555556666666555              5667777777776653 2  666677777777


Q ss_pred             cCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccc
Q 042944          511 ANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNL  580 (637)
Q Consensus       511 ~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l  580 (637)
                      ++|++++                ++.|+.|++++|.+.+. +     .+..|+.+++++|++++.+|..+
T Consensus       347 ~~N~l~~----------------l~~L~~L~l~~n~l~g~-~-----~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          347 VNAHIQD----------------FSSVGKIPALNNNFEAE-G-----QTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             CSSCCCB----------------CTTGGGSSGGGTSEEEE-E-----EEEECCCBCCBTTBEEEECCTTC
T ss_pred             CCCCCCC----------------ccccccccccCCcEEec-c-----eeeecCccccccCcEEEEcChhH
Confidence            7776651                23455556666666533 1     24455666666666666665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.9e-34  Score=301.28  Aligned_cols=344  Identities=23%  Similarity=0.308  Sum_probs=172.7

Q ss_pred             CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcc
Q 042944          140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSL  219 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L  219 (637)
                      +++++|+++++.+. .++.  +..+++|++|++++|.++.++. +.++++|++|++++|.+.+..+  +..++     +|
T Consensus        46 ~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~-----~L  114 (466)
T 1o6v_A           46 DQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLT-----NL  114 (466)
T ss_dssp             HTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCT-----TC
T ss_pred             ccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh--hcCCC-----CC
Confidence            33444444444443 3332  3444444444444444444433 4444444444444444442222  33333     44


Q ss_pred             cEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 042944          220 EILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRL  299 (637)
Q Consensus       220 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~  299 (637)
                      ++|++++|.+.... .+..+++|++|++++|.+.+.  ..+..+++|+.|+++ +.+... ..+..+++|++|++++|.+
T Consensus       115 ~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~-~~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          115 TGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL-KPLANLTTLERLDISSNKV  189 (466)
T ss_dssp             CEEECCSSCCCCCG-GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC-GGGTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCCCCCCh-HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc-hhhccCCCCCEEECcCCcC
Confidence            44444444444322 244444555555555544432  124445555555543 222211 1233345555555555554


Q ss_pred             CCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCcccc
Q 042944          300 NGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKW  379 (637)
Q Consensus       300 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  379 (637)
                      .+.  ..+..+++|+.|++++|.+.+..+   +..+++|++|++++|.+...                          ..
T Consensus       190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--------------------------~~  238 (466)
T 1o6v_A          190 SDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDI--------------------------GT  238 (466)
T ss_dssp             CCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCC--------------------------GG
T ss_pred             CCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccc--------------------------hh
Confidence            432  124555556666666555554322   34455555555555544311                          12


Q ss_pred             ccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEE
Q 042944          380 LQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL  459 (637)
Q Consensus       380 l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L  459 (637)
                      +..+++|+.|++++|.+.+..+  +. .+++|++|++++|.+++..+  +..+++|+.|++++|++.+            
T Consensus       239 l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~------------  301 (466)
T 1o6v_A          239 LASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED------------  301 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC------------
T ss_pred             hhcCCCCCEEECCCCccccchh--hh-cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccC------------
Confidence            3445555555555555554333  22 23556666666665554332  3444444444444444332            


Q ss_pred             EcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcE
Q 042944          460 NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKI  539 (637)
Q Consensus       460 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~  539 (637)
                               ..+   ....++|+.|++++|.+++..+  +..+++|+.|++++|++++         + ..+..+++|++
T Consensus       302 ---------~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~---------~-~~l~~l~~L~~  357 (466)
T 1o6v_A          302 ---------ISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD---------V-SSLANLTNINW  357 (466)
T ss_dssp             ---------CGG---GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC---------C-GGGTTCTTCCE
T ss_pred             ---------chh---hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC---------c-hhhccCCCCCE
Confidence                     221   1112667777777777765443  6677778888888887762         2 34667777888


Q ss_pred             EEcCCCcccccCChhhhhcCCCCcEEeccCccccc
Q 042944          540 IDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHG  574 (637)
Q Consensus       540 L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~  574 (637)
                      |++++|++++..|  +. .+++|+.|++++|++++
T Consensus       358 L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          358 LSAGHNQISDLTP--LA-NLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EECCSSCCCBCGG--GT-TCTTCCEEECCCEEEEC
T ss_pred             EeCCCCccCccch--hh-cCCCCCEEeccCCcccC
Confidence            8888887774444  33 57888888888887774

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.4e-34  Score=302.78  Aligned_cols=362  Identities=19%  Similarity=0.201  Sum_probs=251.7

Q ss_pred             hhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhh
Q 042944          130 SAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFL  209 (637)
Q Consensus       130 ~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~  209 (637)
                      ..+..+.++ ++|++|++++|.++ .+|  .+..+++|++|++++|+++.+|  ++.+++|++|++++|.+.+. +  ++
T Consensus        33 ~~~~~~~~l-~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~--~~  103 (457)
T 3bz5_A           33 TDTISEEQL-ATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL-D--VT  103 (457)
T ss_dssp             TSEEEHHHH-TTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC-C--CT
T ss_pred             ccccChhHc-CCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee-e--cC
Confidence            334446666 88899999988887 566  3788888889998888888875  77888888888888888754 2  56


Q ss_pred             hcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCC
Q 042944          210 NLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFL  289 (637)
Q Consensus       210 ~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L  289 (637)
                      .++     +|++|++++|.+... + +..+++|++|++++|.+++.   .+..+++|++|++++|...+.. .+..+++|
T Consensus       104 ~l~-----~L~~L~L~~N~l~~l-~-~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L  172 (457)
T 3bz5_A          104 PLT-----KLTYLNCDTNKLTKL-D-VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQL  172 (457)
T ss_dssp             TCT-----TCCEEECCSSCCSCC-C-CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTC
T ss_pred             CCC-----cCCEEECCCCcCCee-c-CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcC
Confidence            666     788888888877753 2 66677777777777777653   2566666777777666433222 34445666


Q ss_pred             CEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccC
Q 042944          290 TRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLH  369 (637)
Q Consensus       290 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~  369 (637)
                      ++|++++|.+++. +  +..+++|+.|++++|.+++.    .+..+++|++|++++|.+                     
T Consensus       173 ~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l---------------------  224 (457)
T 3bz5_A          173 TTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKL---------------------  224 (457)
T ss_dssp             CEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCC---------------------
T ss_pred             CEEECCCCcccee-c--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcc---------------------
Confidence            6666666665542 2  44555555555555555542    244444455555544444                     


Q ss_pred             CcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCC
Q 042944          370 CKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPV  449 (637)
Q Consensus       370 ~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~  449 (637)
                         .+ +|  +..+++|+.|++++|.+.+..+.    .+++|+.|++++|              .|+.+++++|.+.+..
T Consensus       225 ---~~-ip--~~~l~~L~~L~l~~N~l~~~~~~----~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~  280 (457)
T 3bz5_A          225 ---TE-ID--VTPLTQLTYFDCSVNPLTELDVS----TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYF  280 (457)
T ss_dssp             ---SC-CC--CTTCTTCSEEECCSSCCSCCCCT----TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEE
T ss_pred             ---cc-cC--ccccCCCCEEEeeCCcCCCcCHH----HCCCCCEEeccCC--------------CCCEEECCCCccCCcc
Confidence               33 23  56778889999999988875432    2378888888765              3566778888766655


Q ss_pred             CCC-CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCC
Q 042944          450 PPV-PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIP  528 (637)
Q Consensus       450 ~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  528 (637)
                      |.. +++|++|++++|+..+.++.    ..+.|+.|+++             .+++|+.|++++|+++         .++
T Consensus       281 ~~~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l~-------------~~~~L~~L~L~~N~l~---------~l~  334 (457)
T 3bz5_A          281 QAEGCRKIKELDVTHNTQLYLLDC----QAAGITELDLS-------------QNPKLVYLYLNNTELT---------ELD  334 (457)
T ss_dssp             ECTTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCCT-------------TCTTCCEEECTTCCCS---------CCC
T ss_pred             cccccccCCEEECCCCcccceecc----CCCcceEechh-------------hcccCCEEECCCCccc---------ccc
Confidence            533 67888888888876554442    11445555444             4478999999999998         343


Q ss_pred             ccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccc
Q 042944          529 PSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCIN  605 (637)
Q Consensus       529 ~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~  605 (637)
                        +..+++|+.|++++|++++         ++.|..|++++|.+.+.     ..+..|+.+++++|.+++.+|..+.
T Consensus       335 --l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          335 --VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             --CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             --cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence              7789999999999999983         35677788999999865     3567788999999999999988654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=5.6e-34  Score=300.82  Aligned_cols=342  Identities=22%  Similarity=0.285  Sum_probs=253.3

Q ss_pred             cccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCC
Q 042944          218 SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDS  297 (637)
Q Consensus       218 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n  297 (637)
                      +++.|++.++.+.. ++.+..+++|++|++++|.+++..+  +..+++|++|++++|.+....+ +..+++|++|++++|
T Consensus        47 ~l~~L~l~~~~i~~-l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n  122 (466)
T 1o6v_A           47 QVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN  122 (466)
T ss_dssp             TCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             cccEEecCCCCCcc-CcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence            89999999999885 4568888999999999999986544  8899999999999999986655 667999999999999


Q ss_pred             cCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCcc
Q 042944          298 RLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFP  377 (637)
Q Consensus       298 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  377 (637)
                      .+++..+  +..+++|+.|++++|.+.+. +  .+..+++|++|++++ .+...  ..+..+++|+.|++++|.+...  
T Consensus       123 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~~--  192 (466)
T 1o6v_A          123 QITDIDP--LKNLTNLNRLELSSNTISDI-S--ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSDI--  192 (466)
T ss_dssp             CCCCCGG--GTTCTTCSEEEEEEEEECCC-G--GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCCC--
T ss_pred             CCCCChH--HcCCCCCCEEECCCCccCCC-h--hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCCC--
Confidence            9886543  88899999999999988763 2  478899999999863 33322  2366778888888888887654  


Q ss_pred             ccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCC-CCCCc
Q 042944          378 KWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPP-VPGNV  456 (637)
Q Consensus       378 ~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L  456 (637)
                      ..+..+++|++|++++|.+.+..+  + ..+++|++|++++|.+++.  ..+..+++|+.|++++|.+.+..+. .+++|
T Consensus       193 ~~l~~l~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L  267 (466)
T 1o6v_A          193 SVLAKLTNLESLIATNNQISDITP--L-GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGLTKL  267 (466)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG--G-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTC
T ss_pred             hhhccCCCCCEEEecCCccccccc--c-cccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhcCCCC
Confidence            347788888888888888877655  2 2357888888888888754  3467778888888888887765542 25677


Q ss_pred             cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCC
Q 042944          457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNE  536 (637)
Q Consensus       457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~  536 (637)
                      ++|++++|++.+..+   ....++|+.|++++|.+++..+  +..+++|+.|++++|++++.         +. +..+++
T Consensus       268 ~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~---------~~-~~~l~~  332 (466)
T 1o6v_A          268 TELKLGANQISNISP---LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI---------SP-VSSLTK  332 (466)
T ss_dssp             SEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC---------GG-GGGCTT
T ss_pred             CEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc---------hh-hccCcc
Confidence            777777777766544   2223777777777777764333  66777777777777777632         22 456777


Q ss_pred             CcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccc
Q 042944          537 LKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG  598 (637)
Q Consensus       537 L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~  598 (637)
                      |++|++++|.++ .++ .+. .+++|+.|++++|++++..|  +..+++|+.|++++|++++
T Consensus       333 L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          333 LQRLFFYNNKVS-DVS-SLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCEEECCSSCCC-CCG-GGT-TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCEeECCCCccC-Cch-hhc-cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            777777777776 333 343 57777777777777775544  6777777777777777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=6.6e-32  Score=274.04  Aligned_cols=307  Identities=22%  Similarity=0.316  Sum_probs=224.1

Q ss_pred             hcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944           84 ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN  163 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~  163 (637)
                      +..+++|++|+++++.+.++     +++..+++|++|++++|.+++..+  +..+ ++|++|++++|.++ .++.  +.+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-----~~~~~~~~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~L~~n~i~-~~~~--~~~  108 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-----QGIEYLTNLEYLNLNGNQITDISP--LSNL-VKLTNLYIGTNKIT-DISA--LQN  108 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCC-CCGG--GTT
T ss_pred             chhcccccEEEEeCCccccc-----hhhhhcCCccEEEccCCccccchh--hhcC-CcCCEEEccCCccc-CchH--HcC
Confidence            56788999999999998876     346778999999999999886554  5555 99999999999988 6764  889


Q ss_pred             CCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCcc
Q 042944          164 MTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQ  243 (637)
Q Consensus       164 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~  243 (637)
                      +++|++|++++|.+..++. +..+++|++|++++|...... ..+..++     +|++|++++|.+....+ +..+++|+
T Consensus       109 l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~-----~L~~L~l~~~~~~~~~~-~~~l~~L~  180 (347)
T 4fmz_A          109 LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDL-SPLSNMT-----GLNYLTVTESKVKDVTP-IANLTDLY  180 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCT-----TCCEEECCSSCCCCCGG-GGGCTTCS
T ss_pred             CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccc-cchhhCC-----CCcEEEecCCCcCCchh-hccCCCCC
Confidence            9999999999999998866 889999999999999655333 3477777     88999998888875443 77788888


Q ss_pred             EEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcC
Q 042944          244 ELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL  323 (637)
Q Consensus       244 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~  323 (637)
                      +|++++|.+.+..+  +..+++|+.+++++|.+....+ +..+++|++|++++|.+++..+  +..+++|+.|++++|.+
T Consensus       181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             EEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             EEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence            88888888775433  6777788888888877764433 5557777777777777765433  66777777777777776


Q ss_pred             CCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchh
Q 042944          324 EGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSW  403 (637)
Q Consensus       324 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~  403 (637)
                      .+.   ..+..+++|++|++++|.+...                          ..+..+++|+.|++++|.+.+..+..
T Consensus       256 ~~~---~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~~l~~L~~L~L~~n~l~~~~~~~  306 (347)
T 4fmz_A          256 SDI---NAVKDLTKLKMLNVGSNQISDI--------------------------SVLNNLSQLNSLFLNNNQLGNEDMEV  306 (347)
T ss_dssp             CCC---GGGTTCTTCCEEECCSSCCCCC--------------------------GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred             CCC---hhHhcCCCcCEEEccCCccCCC--------------------------hhhcCCCCCCEEECcCCcCCCcChhH
Confidence            653   2466667777777776665532                          23556667777777777776655555


Q ss_pred             hhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCc
Q 042944          404 FWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFE  446 (637)
Q Consensus       404 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~  446 (637)
                      +... ++|++|++++|++++..+  +..+++|+.|++++|.++
T Consensus       307 l~~l-~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          307 IGGL-TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HHTC-TTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hhcc-ccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            5543 677777777777766555  566777777777777654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.4e-31  Score=271.60  Aligned_cols=306  Identities=22%  Similarity=0.325  Sum_probs=222.9

Q ss_pred             cCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCC
Q 042944          111 MNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGL  190 (637)
Q Consensus       111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L  190 (637)
                      +..+++|++|+++++.+....  .+..+ ++|++|++++|.++ .++.  +..+++|++|++++|.++.++ .+.++++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~--~~~~~-~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQ--GIEYL-TNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCT--TGGGC-TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTC
T ss_pred             chhcccccEEEEeCCccccch--hhhhc-CCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCch-HHcCCCcC
Confidence            344588888888888887543  25555 88888888888887 6766  788888888888888888875 58888888


Q ss_pred             cEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEE
Q 042944          191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILN  270 (637)
Q Consensus       191 ~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~  270 (637)
                      ++|++++|.+.+..+  +..++     +|++|++++|.....++.+..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus       113 ~~L~l~~n~i~~~~~--~~~l~-----~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~  183 (347)
T 4fmz_A          113 RELYLNEDNISDISP--LANLT-----KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS  183 (347)
T ss_dssp             SEEECTTSCCCCCGG--GTTCT-----TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred             CEEECcCCcccCchh--hccCC-----ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence            888888888874433  66666     8888888888655566667777778888887777764432  66667777777


Q ss_pred             cCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccc
Q 042944          271 LDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLAL  350 (637)
Q Consensus       271 l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  350 (637)
                      +++|.+....+ +..+++|+.+++++|.+.+..+  +..+++|+.|++++|.+.+..+   +..+++|++|++++|.+. 
T Consensus       184 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~-  256 (347)
T 4fmz_A          184 LNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQIS-  256 (347)
T ss_dssp             CTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCC-
T ss_pred             ccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccC-
Confidence            77776654333 4446666666666666654333  5556666666666666654321   555555666665555543 


Q ss_pred             cccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCccccccc
Q 042944          351 NFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSL  430 (637)
Q Consensus       351 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~  430 (637)
                                             ..  ..+..+++|++|++++|.+.+.  ..+ ..+++|++|++++|.+++..+..+.
T Consensus       257 -----------------------~~--~~~~~l~~L~~L~l~~n~l~~~--~~~-~~l~~L~~L~L~~n~l~~~~~~~l~  308 (347)
T 4fmz_A          257 -----------------------DI--NAVKDLTKLKMLNVGSNQISDI--SVL-NNLSQLNSLFLNNNQLGNEDMEVIG  308 (347)
T ss_dssp             -----------------------CC--GGGTTCTTCCEEECCSSCCCCC--GGG-GGCTTCSEEECCSSCCCGGGHHHHH
T ss_pred             -----------------------CC--hhHhcCCCcCEEEccCCccCCC--hhh-cCCCCCCEEECcCCcCCCcChhHhh
Confidence                                   22  4577889999999999999875  233 3458999999999999998889899


Q ss_pred             CCCCCCeEeCCCCcCcCCCCC-CCCCccEEEccccccc
Q 042944          431 NYAGYPGIDLSSNDFEGPVPP-VPGNVTSLNLSNNKFS  467 (637)
Q Consensus       431 ~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~L~~n~l~  467 (637)
                      .+++|+.|++++|++++..+. .+++|++|++++|+++
T Consensus       309 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          309 GLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK  346 (347)
T ss_dssp             TCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred             ccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence            999999999999999987763 3889999999999875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.4e-32  Score=289.73  Aligned_cols=322  Identities=16%  Similarity=0.168  Sum_probs=238.6

Q ss_pred             ccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCC
Q 042944          242 LQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFG  320 (637)
Q Consensus       242 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  320 (637)
                      -+.++.+++.++. .|..+  .+.++.|++++|.+....+. +..+++|++|++++|.+.+..+..+.++++|+.|++++
T Consensus        13 ~~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           13 DRAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TTEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            3567777777763 34433  35788888888888776543 44588888888888888877777888888888888888


Q ss_pred             CcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCcc
Q 042944          321 NSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAV  400 (637)
Q Consensus       321 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~  400 (637)
                      |.+.. .+...+.++++|++|++++|.+....+..+..+++|++|++.+|.+....+..+..+++|+.|++++|.+.+..
T Consensus        90 n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  168 (477)
T 2id5_A           90 NRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP  168 (477)
T ss_dssp             SCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred             CcCCc-cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence            88876 34446778888888888888887777777777777888888877777666667777777777777777777655


Q ss_pred             chhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCC
Q 042944          401 PSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEY  480 (637)
Q Consensus       401 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  480 (637)
                      +..+.. +++|++|++++|.+.+..+..+..+++|+.|++++|...                     +..+...... .+
T Consensus       169 ~~~l~~-l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~---------------------~~~~~~~~~~-~~  225 (477)
T 2id5_A          169 TEALSH-LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL---------------------DTMTPNCLYG-LN  225 (477)
T ss_dssp             HHHHTT-CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC---------------------CEECTTTTTT-CC
T ss_pred             hhHhcc-cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc---------------------cccCcccccC-cc
Confidence            544444 367777777777776655555555555555555555433                     2222222211 57


Q ss_pred             ccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCC
Q 042944          481 FSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLP  560 (637)
Q Consensus       481 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~  560 (637)
                      |+.|++++|.++...+..+..+++|+.|++++|.+++        ..+..+..+++|++|++++|.+++..|..+. .++
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~  296 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST--------IEGSMLHELLRLQEIQLVGGQLAVVEPYAFR-GLN  296 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE--------ECTTSCTTCTTCCEEECCSSCCSEECTTTBT-TCT
T ss_pred             ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc--------cChhhccccccCCEEECCCCccceECHHHhc-Ccc
Confidence            8888888888886555788999999999999999883        2334578899999999999999865565555 799


Q ss_pred             CCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944          561 KLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA  599 (637)
Q Consensus       561 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~  599 (637)
                      +|+.|+|++|++++..+..|..+++|+.|++++|++...
T Consensus       297 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            999999999999966666788899999999999999754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=3.4e-32  Score=280.66  Aligned_cols=311  Identities=18%  Similarity=0.157  Sum_probs=221.5

Q ss_pred             cCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCC-CCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEE
Q 042944          238 EFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFL  316 (637)
Q Consensus       238 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  316 (637)
                      .+++++.|+++++.++...+..+..+++|++|++++|.+....+ .+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            34577777777777765555556667777777777777665544 34446677777777776666656666666667777


Q ss_pred             ecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCC
Q 042944          317 DLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEI  396 (637)
Q Consensus       317 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i  396 (637)
                      ++++|.+.. .+...+.++++|++|++++|.+...                        .+..+..+++|++|++++|.+
T Consensus       123 ~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          123 VLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERI------------------------EDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             ECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBC------------------------CTTTTSSCTTCCEEECCSSCC
T ss_pred             ECCCCccCc-CCHHHhcCCCCCcEEECCCCccCcc------------------------ChhhccCCCCCCEEECCCCcC
Confidence            776666664 3333456666666666666665533                        344455566666666666666


Q ss_pred             CCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccc
Q 042944          397 SDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSI  476 (637)
Q Consensus       397 ~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~  476 (637)
                      .+....    .+++|+++++++|.+++.     ...+.|+.|++++|.+.......+++|++|++++|++++. +.  ..
T Consensus       178 ~~~~~~----~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~--l~  245 (390)
T 3o6n_A          178 THVDLS----LIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AW--LL  245 (390)
T ss_dssp             SBCCGG----GCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GG--GG
T ss_pred             Cccccc----cccccceeeccccccccc-----CCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HH--Hc
Confidence            554221    236777777777766532     2334677777777777666555567888888888888764 22  22


Q ss_pred             cCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhh
Q 042944          477 SGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIG  556 (637)
Q Consensus       477 ~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~  556 (637)
                      ..++|++|++++|.+++..+..+..+++|+.|++++|+++         .+|..+..+++|++|++++|.++ .+|..+.
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---------~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~  315 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP  315 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC---------EEECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred             CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc---------ccCcccCCCCCCCEEECCCCcce-ecCcccc
Confidence            3389999999999999888899999999999999999988         55666678899999999999998 7887777


Q ss_pred             hcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944          557 DTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA  599 (637)
Q Consensus       557 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~  599 (637)
                       .+++|++|++++|+++ .++  +..+++|+.|++++|++...
T Consensus       316 -~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          316 -QFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             -HHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEHH
T ss_pred             -ccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccch
Confidence             5899999999999998 444  67889999999999999864

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.1e-32  Score=280.04  Aligned_cols=310  Identities=16%  Similarity=0.179  Sum_probs=252.4

Q ss_pred             CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEE
Q 042944          286 FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESI  365 (637)
Q Consensus       286 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  365 (637)
                      +++++.|+++++.++...+..+..+++|+.|++++|.+.+. +...+.++++|++|++++|.+....+..+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            56677777777777755555567777788888877777653 33367777788888888887777666677777888888


Q ss_pred             eccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcC
Q 042944          366 GLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDF  445 (637)
Q Consensus       366 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~  445 (637)
                      ++++|.+....+..+..+++|++|++++|.+.+..+..+.. +++|++|++++|.+++..   +..+++|+.+++++|.+
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA-TTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSS-CTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccC-CCCCCEEECCCCcCCccc---cccccccceeecccccc
Confidence            88888877555566789999999999999998877666655 489999999999998653   56789999999999998


Q ss_pred             cCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccc
Q 042944          446 EGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVG  525 (637)
Q Consensus       446 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  525 (637)
                      .+..  .+++|++|++++|++.......    .++|+.|++++|.+++.  ..+..+++|++|++++|.+.+        
T Consensus       199 ~~~~--~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~--------  262 (390)
T 3o6n_A          199 STLA--IPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK--------  262 (390)
T ss_dssp             SEEE--CCSSCSEEECCSSCCCEEECCC----CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE--------
T ss_pred             cccC--CCCcceEEECCCCeeeeccccc----cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC--------
Confidence            7642  3568999999999987653322    28999999999999853  578999999999999999883        


Q ss_pred             cCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccc
Q 042944          526 EIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCIN  605 (637)
Q Consensus       526 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~  605 (637)
                      ..|..+..+++|++|++++|.++ .++.... .+++|++|++++|+++ .+|..+..+++|+.|++++|++++. |  +.
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~  336 (390)
T 3o6n_A          263 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS  336 (390)
T ss_dssp             EESGGGTTCSSCCEEECCSSCCC-EEECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred             cChhHccccccCCEEECCCCcCc-ccCcccC-CCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--ch
Confidence            34677889999999999999998 5666554 6999999999999998 6788889999999999999999844 4  78


Q ss_pred             ccccceeeccCCCeeEE
Q 042944          606 NLTAMVEKASSNSTITH  622 (637)
Q Consensus       606 ~l~~L~~l~l~~n~l~~  622 (637)
                      .+++|++|++++|+++.
T Consensus       337 ~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          337 THHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             TTCCCSEEECCSSCEEH
T ss_pred             hhccCCEEEcCCCCccc
Confidence            89999999999999864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-31  Score=283.42  Aligned_cols=318  Identities=21%  Similarity=0.197  Sum_probs=197.0

Q ss_pred             CcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCccc
Q 042944          142 LLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLE  220 (637)
Q Consensus       142 L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~  220 (637)
                      -+.++.+++.++ .+|. .+  .+++++|++++|+++.+ +..|.++++|++|++++|.+.+..|..|.+++     +|+
T Consensus        13 ~~~v~c~~~~l~-~ip~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~   83 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPE-GI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLF-----NLR   83 (477)
T ss_dssp             TTEEECCSCCCS-SCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-----TCC
T ss_pred             CCEEEeCCCCcC-cCCC-CC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCc-----cCC
Confidence            457888888887 7877 23  35788999999988886 56788888999999988888877778888777     888


Q ss_pred             EEEcCCCCCCCCcCC-cccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCc
Q 042944          221 ILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSR  298 (637)
Q Consensus       221 ~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~  298 (637)
                      +|++++|.+...++. +..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+. +..+++|++|++++|.
T Consensus        84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  163 (477)
T 2id5_A           84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN  163 (477)
T ss_dssp             EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred             EEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence            888888887765543 56677777777777777766666666777777777776666544332 3335566666666665


Q ss_pred             CCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccc
Q 042944          299 LNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPK  378 (637)
Q Consensus       299 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  378 (637)
                      +++..+..+..+++|+.|++++|.+.+. +...+..+++|+.|++++|                        ......+.
T Consensus       164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~~------------------------~~~~~~~~  218 (477)
T 2id5_A          164 LTSIPTEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEISHW------------------------PYLDTMTP  218 (477)
T ss_dssp             CSSCCHHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEEECC------------------------TTCCEECT
T ss_pred             CcccChhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeCCCC------------------------ccccccCc
Confidence            5554444555555555555555555442 2223444455555555444                        43333444


Q ss_pred             cccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccE
Q 042944          379 WLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTS  458 (637)
Q Consensus       379 ~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~  458 (637)
                      ......+|+.|++++|.+....+..+.. +++|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+.    
T Consensus       219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----  293 (477)
T 2id5_A          219 NCLYGLNLTSLSITHCNLTAVPYLAVRH-LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR----  293 (477)
T ss_dssp             TTTTTCCCSEEEEESSCCCSCCHHHHTT-CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT----
T ss_pred             ccccCccccEEECcCCcccccCHHHhcC-ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc----
Confidence            4444456777777777766544333333 36777777777777665555556666666666666555543332211    


Q ss_pred             EEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCC
Q 042944          459 LNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFS  516 (637)
Q Consensus       459 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  516 (637)
                                        ..++|+.|++++|.+++..+..|..+++|+.|++++|++.
T Consensus       294 ------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          294 ------------------GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             ------------------TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ------------------CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence                              1145555555555555444445555556666666666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.98  E-value=2.5e-31  Score=289.10  Aligned_cols=310  Identities=18%  Similarity=0.155  Sum_probs=215.7

Q ss_pred             CCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCC-CCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEe
Q 042944          239 FSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLD  317 (637)
Q Consensus       239 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  317 (637)
                      +.+++.+++++|.+....+..+..+++|+.|++++|.+....+ .+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            3456666666666654444445555666666666665554443 233355555555555555555555555555555555


Q ss_pred             cCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCC
Q 042944          318 LFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEIS  397 (637)
Q Consensus       318 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~  397 (637)
                      +++|.+.+ .+...+.++++|++|++++|.+                        ....+..+..+++|+.|++++|.+.
T Consensus       130 L~~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l------------------------~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          130 LERNDLSS-LPRGIFHNTPKLTTLSMSNNNL------------------------ERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             CCSSCCCC-CCTTTTTTCTTCCEEECCSSCC------------------------CBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             eeCCCCCC-CCHHHhccCCCCCEEEeeCCcC------------------------CCCChhhhhcCCcCcEEECcCCCCC
Confidence            55555553 2222345555555555555544                        4444555666677777777777766


Q ss_pred             CccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCccccccccc
Q 042944          398 DAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSIS  477 (637)
Q Consensus       398 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~  477 (637)
                      +....    .+++|+.|++++|.+++     +...+.|+.|++++|.+....+..+++|+.|++++|.+++. +.  ...
T Consensus       185 ~~~~~----~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~--l~~  252 (597)
T 3oja_B          185 HVDLS----LIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AW--LLN  252 (597)
T ss_dssp             BCCGG----GCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GG--GGG
T ss_pred             CcChh----hhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hh--hcc
Confidence            54322    23677778887777653     23445788888888887766666677899999999988764 22  223


Q ss_pred             CCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh
Q 042944          478 GEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD  557 (637)
Q Consensus       478 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~  557 (637)
                      .++|+.|++++|.+++..|..|..+++|+.|++++|.++         .+|..+..+++|++|++++|.++ .+|..+. 
T Consensus       253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-  321 (597)
T 3oja_B          253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---------ALNLYGQPIPTLKVLDLSHNHLL-HVERNQP-  321 (597)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC---------EEECSSSCCTTCCEEECCSSCCC-CCGGGHH-
T ss_pred             CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC---------CCCcccccCCCCcEEECCCCCCC-ccCcccc-
Confidence            389999999999999888999999999999999999998         56666778899999999999998 8888887 


Q ss_pred             cCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944          558 TLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA  599 (637)
Q Consensus       558 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~  599 (637)
                      .+++|+.|+|++|++++ ++  +..+++|+.|++++|++.+.
T Consensus       322 ~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          322 QFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             HHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHH
T ss_pred             cCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCCh
Confidence            69999999999999984 43  67789999999999999754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=3.7e-31  Score=287.78  Aligned_cols=309  Identities=16%  Similarity=0.176  Sum_probs=256.2

Q ss_pred             CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEE
Q 042944          286 FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESI  365 (637)
Q Consensus       286 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L  365 (637)
                      +.+++.+++++|.+....+..+..+++|+.|++++|.+.+. +...+..+++|++|++++|.+....+..+..+++|+.|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            56677777777777766666677778888888888877763 33367778888888888888877777777778888888


Q ss_pred             eccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcC
Q 042944          366 GLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDF  445 (637)
Q Consensus       366 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~  445 (637)
                      ++++|.+....+..+..+++|++|++++|.+.+..+..+... ++|++|++++|.+++..   +..+++|+.|++++|.+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC-TTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcC-CcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence            888888876666667899999999999999998777777654 89999999999998753   56788999999999998


Q ss_pred             cCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccc
Q 042944          446 EGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVG  525 (637)
Q Consensus       446 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  525 (637)
                      .+..  .+.+|++|++++|.+........    ++|+.|++++|.+++  +..+..+++|+.|++++|.+.+        
T Consensus       205 ~~l~--~~~~L~~L~ls~n~l~~~~~~~~----~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~--------  268 (597)
T 3oja_B          205 STLA--IPIAVEELDASHNSINVVRGPVN----VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK--------  268 (597)
T ss_dssp             SEEE--CCTTCSEEECCSSCCCEEECSCC----SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE--------
T ss_pred             cccc--CCchhheeeccCCcccccccccC----CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC--------
Confidence            7643  35689999999999876543322    789999999999985  4779999999999999999883        


Q ss_pred             cCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccc
Q 042944          526 EIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCIN  605 (637)
Q Consensus       526 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~  605 (637)
                      ..|..+..+++|++|++++|.++ .+|..+. .+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++. |  +.
T Consensus       269 ~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~  342 (597)
T 3oja_B          269 IMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS  342 (597)
T ss_dssp             EESGGGTTCSSCCEEECTTSCCC-EEECSSS-CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred             CCHHHhcCccCCCEEECCCCCCC-CCCcccc-cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hh
Confidence            45677889999999999999998 5676665 6999999999999999 7888899999999999999999854 3  78


Q ss_pred             ccccceeeccCCCeeE
Q 042944          606 NLTAMVEKASSNSTIT  621 (637)
Q Consensus       606 ~l~~L~~l~l~~n~l~  621 (637)
                      .+++|+.|++++|++.
T Consensus       343 ~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          343 THHTLKNLTLSHNDWD  358 (597)
T ss_dssp             TTCCCSEEECCSSCEE
T ss_pred             hcCCCCEEEeeCCCCC
Confidence            8899999999999986

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=2.2e-33  Score=296.71  Aligned_cols=353  Identities=20%  Similarity=0.199  Sum_probs=185.8

Q ss_pred             CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCC----CCCchhccCCCCCCEEEcCCCcccch--hhhcCCCC
Q 042944          115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAG----PIPDYAFSNMTALQHLNLSLNQISAI--SKSFGNMC  188 (637)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~----~l~~~~~~~l~~L~~L~L~~n~l~~l--~~~~~~l~  188 (637)
                      ++|++|++++|.+++.....++..+++|++|++++|.+.+    .++. .+..+++|++|++++|.+.+.  ...+..++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            6799999999999877766655555999999999999872    1233 577889999999999988772  22233344


Q ss_pred             ----CCcEEEcCCCcCCCC----chhHhhhcccCCCCcccEEEcCCCCCCCCcC-Cc-----ccCCCccEEEccCCcCCC
Q 042944          189 ----GLKTLHLFDNNLTGQ----LPELFLNLSGCSKNSLEILKLGGNKLTGSLP-DI-----TEFSSLQELHLFDNKLDG  254 (637)
Q Consensus       189 ----~L~~L~l~~n~i~~~----~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~-~~-----~~~~~L~~L~l~~n~i~~  254 (637)
                          +|++|++++|.+...    .+..+..++     +|++|++++|.+..... .+     ...++|++|++++|.+++
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-----~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-----TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCT-----TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCC-----ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence                799999999988743    356666666     88888888877653211 11     113356666666666554


Q ss_pred             CC----CCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhc-----CCCCCCEEecCCCcCCC
Q 042944          255 SF----PEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLG-----RLSKLEFLDLFGNSLEG  325 (637)
Q Consensus       255 ~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~  325 (637)
                      ..    +..+..+++|++|++++|.+                       .+..+..+.     ..++|+.|++++|.+.+
T Consensus       157 ~~~~~l~~~l~~~~~L~~L~L~~n~i-----------------------~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          157 ASCEPLASVLRAKPDFKELTVSNNDI-----------------------NEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSBC-----------------------HHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             HHHHHHHHHHhhCCCCCEEECcCCCc-----------------------chHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            22    22233344455555554444                       322221111     23355555555555443


Q ss_pred             cc---chhhhcCCCCCcEEEccCCccccccc-----CCCCCCCceeEEeccCCcCCCC----ccccccCCCCccEEEeeC
Q 042944          326 MI---TESHVSNLSKLKYMDFSFNSLALNFS-----FGWLPPFQLESIGLLHCKLGPH----FPKWLQSQKNYYFLDISD  393 (637)
Q Consensus       326 ~~---~~~~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~  393 (637)
                      ..   ....+..+++|++|++++|.+.....     ..+..+++|++|++++|.++..    ++..+..+++|++|++++
T Consensus       214 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  293 (461)
T 1z7x_W          214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG  293 (461)
T ss_dssp             THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence            21   01133445555555555555442211     0111223333333333333321    234444556666666666


Q ss_pred             CCCCCccchhhhhc----CCCccEEECCCCcCCCcc----cccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEccccc
Q 042944          394 TEISDAVPSWFWDL----SPNLYYLNLSHNHLEGTV----LDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNK  465 (637)
Q Consensus       394 n~i~~~~~~~~~~~----~~~L~~L~l~~n~i~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~  465 (637)
                      |.+.+..+..+...    .++|++|++++|.+++..    +..+..++                     +|++|++++|+
T Consensus       294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~---------------------~L~~L~Ls~n~  352 (461)
T 1z7x_W          294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR---------------------FLLELQISNNR  352 (461)
T ss_dssp             CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCS---------------------SCCEEECCSSB
T ss_pred             CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCC---------------------CccEEEccCCc
Confidence            65554433333322    135555555555554321    22222233                     33333333333


Q ss_pred             ccCccccccc----ccCCCccEEeCCCCCCcc----cCchhhhccCCCcEEeccCccCCC
Q 042944          466 FSGPISSLCS----ISGEYFSYLDVSDNLLSG----ELPDCLLRWQALAVLNLANNNFSG  517 (637)
Q Consensus       466 l~~~~~~~~~----~~~~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~  517 (637)
                      +++.......    ...++|++|++++|.+++    .++..+..+++|++|++++|++++
T Consensus       353 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            3322111110    001456666666666554    445555556666666666666554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.6e-28  Score=246.94  Aligned_cols=289  Identities=18%  Similarity=0.181  Sum_probs=170.2

Q ss_pred             CCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEcc
Q 042944          265 PLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFS  344 (637)
Q Consensus       265 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  344 (637)
                      +++.++++++.+...+..+  .+.++.|++++|.+++..+..+..+++|+.|++++|.+.+..+. .+.++++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEECC
Confidence            3445555555444332222  24556666666666555444555666666666666665543222 45556666666666


Q ss_pred             CCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCC-
Q 042944          345 FNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG-  423 (637)
Q Consensus       345 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~-  423 (637)
                      +|.++..                         |..+.  ++|++|++++|.+.+..+..+.. +++|++|++++|.+.. 
T Consensus       109 ~n~l~~l-------------------------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~  160 (330)
T 1xku_A          109 KNQLKEL-------------------------PEKMP--KTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNPLKSS  160 (330)
T ss_dssp             SSCCSBC-------------------------CSSCC--TTCCEEECCSSCCCBBCHHHHTT-CTTCCEEECCSSCCCGG
T ss_pred             CCcCCcc-------------------------Chhhc--ccccEEECCCCcccccCHhHhcC-CccccEEECCCCcCCcc
Confidence            6555421                         11111  45555555555555444433333 2566666666665542 


Q ss_pred             -cccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhcc
Q 042944          424 -TVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRW  502 (637)
Q Consensus       424 -~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l  502 (637)
                       ..+..+..+++|+.|++++|.+.......+                         ++|++|++++|.+++..+..+..+
T Consensus       161 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-------------------------~~L~~L~l~~n~l~~~~~~~~~~l  215 (330)
T 1xku_A          161 GIENGAFQGMKKLSYIRIADTNITTIPQGLP-------------------------PSLTELHLDGNKITKVDAASLKGL  215 (330)
T ss_dssp             GBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-------------------------TTCSEEECTTSCCCEECTGGGTTC
T ss_pred             CcChhhccCCCCcCEEECCCCccccCCcccc-------------------------ccCCEEECCCCcCCccCHHHhcCC
Confidence             334445555555555555555543222112                         456666666666666666777777


Q ss_pred             CCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccC
Q 042944          503 QALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCR  582 (637)
Q Consensus       503 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~  582 (637)
                      ++|+.|++++|.+++        ..+..+..+++|++|++++|.++ .+|..+. .+++|++|++++|++++..+..|..
T Consensus       216 ~~L~~L~Ls~n~l~~--------~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~i~~~~~~~f~~  285 (330)
T 1xku_A          216 NNLAKLGLSFNSISA--------VDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCP  285 (330)
T ss_dssp             TTCCEEECCSSCCCE--------ECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             CCCCEEECCCCcCce--------eChhhccCCCCCCEEECCCCcCc-cCChhhc-cCCCcCEEECCCCcCCccChhhcCC
Confidence            788888888887762        22335667777888888888876 7777666 5788888888888877544444433


Q ss_pred             ------CCCCcEeeCCCCcccc--cccccccccccceeeccCCCe
Q 042944          583 ------LSKIQLLDFSLNSISG--AIPKCINNLTAMVEKASSNST  619 (637)
Q Consensus       583 ------l~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~l~l~~n~  619 (637)
                            .++++.|++++|++..  ..|..|..++.++.++++||+
T Consensus       286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence                  3678888888888863  556788888889999988885

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.6e-32  Score=290.06  Aligned_cols=356  Identities=19%  Similarity=0.174  Sum_probs=213.4

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchh----hhHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSA----YHWLFKISSNLLALDLNSNQLAGPIPDYAFSN  163 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~----~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~  163 (637)
                      +++++|+++++.+++...  ...+..+++|++|++++|.+++..    +..+..+ ++|++|++++|.+.+..+...+..
T Consensus         3 ~~l~~L~Ls~~~l~~~~~--~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~   79 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARW--AELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQG   79 (461)
T ss_dssp             EEEEEEEEESCCCCHHHH--HHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             ccceehhhhhcccCchhH--HHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHH
Confidence            456777777776665431  112444567777777777766433    2223333 677777777776652222212233


Q ss_pred             CC----CCCEEEcCCCcccc-----hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC--
Q 042944          164 MT----ALQHLNLSLNQISA-----ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS--  232 (637)
Q Consensus       164 l~----~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~--  232 (637)
                      ++    +|++|++++|+++.     ++..+..+++|++|++++|.+.+..+..+...-....++|++|++++|.++..  
T Consensus        80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence            44    57777777777663     45666777777777777777654444444331101112577777777766532  


Q ss_pred             ---cCCcccCCCccEEEccCCcCCCCCCCcCC-----CCCCCcEEEcCCCCCCCC-----CCCCCCCCCCCEEEccCCcC
Q 042944          233 ---LPDITEFSSLQELHLFDNKLDGSFPEKFR-----KPSPLVILNLDGNQLWGS-----LPDLSVFPFLTRLDVSDSRL  299 (637)
Q Consensus       233 ---~~~~~~~~~L~~L~l~~n~i~~~~~~~l~-----~l~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~n~~  299 (637)
                         ...+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+...     ...+..+++|++|++++|.+
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  239 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence               12244556777777777776543333232     245777777777776542     12233367777777777776


Q ss_pred             CCCC-----hhhhcCCCCCCEEecCCCcCCCcc---chhhhcCCCCCcEEEccCCcccccccCCC-----CCCCceeEEe
Q 042944          300 NGTV-----SEGLGRLSKLEFLDLFGNSLEGMI---TESHVSNLSKLKYMDFSFNSLALNFSFGW-----LPPFQLESIG  366 (637)
Q Consensus       300 ~~~~-----~~~l~~l~~L~~L~l~~n~~~~~~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~  366 (637)
                      ++..     +..+..+++|+.|++++|.+++..   ....+..+++|++|++++|.+.......+     ...++|++|+
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  319 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW  319 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence            6432     122235677888888887776532   12245567778888888877754332221     2235677777


Q ss_pred             ccCCcCCCC----ccccccCCCCccEEEeeCCCCCCccchhhhhc----CCCccEEECCCCcCCC----cccccccCCCC
Q 042944          367 LLHCKLGPH----FPKWLQSQKNYYFLDISDTEISDAVPSWFWDL----SPNLYYLNLSHNHLEG----TVLDLSLNYAG  434 (637)
Q Consensus       367 l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~----~~~L~~L~l~~n~i~~----~~~~~~~~~~~  434 (637)
                      +++|.++..    ++.++..+++|++|++++|.+.+..+..+...    .++|++|++++|.+++    ..+..+..+++
T Consensus       320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  399 (461)
T 1z7x_W          320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  399 (461)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence            777776554    45566777888888888888877666555432    3588888888888875    55566666777


Q ss_pred             CCeEeCCCCcCc
Q 042944          435 YPGIDLSSNDFE  446 (637)
Q Consensus       435 L~~L~l~~n~~~  446 (637)
                      |++|++++|+++
T Consensus       400 L~~L~l~~N~i~  411 (461)
T 1z7x_W          400 LRELDLSNNCLG  411 (461)
T ss_dssp             CCEEECCSSSCC
T ss_pred             ccEEECCCCCCC
Confidence            777777777665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=9.9e-29  Score=248.68  Aligned_cols=288  Identities=20%  Similarity=0.195  Sum_probs=166.0

Q ss_pred             CCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEcc
Q 042944          265 PLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFS  344 (637)
Q Consensus       265 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  344 (637)
                      +++.++++++.+...+..+  .+++++|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCEEECC
Confidence            4555555555554333222  2455556666665554444455555666666666665554322 245555555555555


Q ss_pred             CCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCC-
Q 042944          345 FNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG-  423 (637)
Q Consensus       345 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~-  423 (637)
                      +|.+...                         |..+.  ++|++|++++|.+....+..+.. +++|++|++++|.++. 
T Consensus       111 ~n~l~~l-------------------------~~~~~--~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~n~l~~~  162 (332)
T 2ft3_A          111 KNHLVEI-------------------------PPNLP--SSLVELRIHDNRIRKVPKGVFSG-LRNMNCIEMGGNPLENS  162 (332)
T ss_dssp             SSCCCSC-------------------------CSSCC--TTCCEEECCSSCCCCCCSGGGSS-CSSCCEEECCSCCCBGG
T ss_pred             CCcCCcc-------------------------Ccccc--ccCCEEECCCCccCccCHhHhCC-CccCCEEECCCCccccC
Confidence            5554421                         11111  34444444444444333222222 2444444444444431 


Q ss_pred             -cccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhcc
Q 042944          424 -TVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRW  502 (637)
Q Consensus       424 -~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l  502 (637)
                       ..+..+..+ +|+.|++++|.                     +++......    ++|++|++++|.+++..+..+..+
T Consensus       163 ~~~~~~~~~l-~L~~L~l~~n~---------------------l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~l~~l  216 (332)
T 2ft3_A          163 GFEPGAFDGL-KLNYLRISEAK---------------------LTGIPKDLP----ETLNELHLDHNKIQAIELEDLLRY  216 (332)
T ss_dssp             GSCTTSSCSC-CCSCCBCCSSB---------------------CSSCCSSSC----SSCSCCBCCSSCCCCCCTTSSTTC
T ss_pred             CCCcccccCC-ccCEEECcCCC---------------------CCccCcccc----CCCCEEECCCCcCCccCHHHhcCC
Confidence             222222222 44444444444                     433221111    566777777777776666778888


Q ss_pred             CCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccC
Q 042944          503 QALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCR  582 (637)
Q Consensus       503 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~  582 (637)
                      ++|+.|++++|.+.+        ..+..+..+++|++|++++|.++ .+|..+. .+++|+.|++++|++++..+..|..
T Consensus       217 ~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          217 SKLYRLGLGHNQIRM--------IENGSLSFLPTLRELHLDNNKLS-RVPAGLP-DLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             TTCSCCBCCSSCCCC--------CCTTGGGGCTTCCEEECCSSCCC-BCCTTGG-GCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             CCCCEEECCCCcCCc--------CChhHhhCCCCCCEEECCCCcCe-ecChhhh-cCccCCEEECCCCCCCccChhHccc
Confidence            888888888888773        22335677888888888888887 7887766 5888888888888888555555544


Q ss_pred             ------CCCCcEeeCCCCccc--ccccccccccccceeeccCCCe
Q 042944          583 ------LSKIQLLDFSLNSIS--GAIPKCINNLTAMVEKASSNST  619 (637)
Q Consensus       583 ------l~~L~~L~ls~n~l~--~~~p~~l~~l~~L~~l~l~~n~  619 (637)
                            .++|+.|++++|++.  +..|..|..+++|+.+++++|+
T Consensus       287 ~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                  367888999999887  5677888889999999998875

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=1.1e-28  Score=248.47  Aligned_cols=248  Identities=18%  Similarity=0.204  Sum_probs=180.8

Q ss_pred             CCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEE
Q 042944          336 SKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLN  415 (637)
Q Consensus       336 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~  415 (637)
                      ++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..... .+   .++|++|+
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~---~~~L~~L~  129 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP-NL---PSSLVELR  129 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS-SC---CTTCCEEE
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCc-cc---cccCCEEE
Confidence            445555555555554444445555555555555555555556777888888888888888775333 22   26888888


Q ss_pred             CCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccC
Q 042944          416 LSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGEL  495 (637)
Q Consensus       416 l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  495 (637)
                      +++|.+++..+..+..+++|+.|++++|.+...                   +..+.... . .+|+.|++++|.+++ +
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------~~~~~~~~-~-l~L~~L~l~~n~l~~-l  187 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-------------------GFEPGAFD-G-LKLNYLRISEAKLTG-I  187 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-------------------GSCTTSSC-S-CCCSCCBCCSSBCSS-C
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccC-------------------CCCccccc-C-CccCEEECcCCCCCc-c
Confidence            888888776666667777777666666665421                   01111111 1 378999999999985 5


Q ss_pred             chhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccccc
Q 042944          496 PDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS  575 (637)
Q Consensus       496 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~  575 (637)
                      |..+.  ++|++|++++|.+++        ..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|+++ .
T Consensus       188 ~~~~~--~~L~~L~l~~n~i~~--------~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~  255 (332)
T 2ft3_A          188 PKDLP--ETLNELHLDHNKIQA--------IELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNKLS-R  255 (332)
T ss_dssp             CSSSC--SSCSCCBCCSSCCCC--------CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSCCC-B
T ss_pred             Ccccc--CCCCEEECCCCcCCc--------cCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCcCe-e
Confidence            55443  799999999999983        2345688899999999999999844444454 7999999999999999 8


Q ss_pred             CCccccCCCCCcEeeCCCCcccccccccccc------cccceeeccCCCeeE
Q 042944          576 IPRNLCRLSKIQLLDFSLNSISGAIPKCINN------LTAMVEKASSNSTIT  621 (637)
Q Consensus       576 ~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~------l~~L~~l~l~~n~l~  621 (637)
                      +|..+..+++|+.|++++|++++..+..|..      .++|+.+++++|++.
T Consensus       256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            8999999999999999999999777777765      467999999999986

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.2e-28  Score=244.79  Aligned_cols=249  Identities=17%  Similarity=0.159  Sum_probs=180.5

Q ss_pred             CCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEEC
Q 042944          337 KLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNL  416 (637)
Q Consensus       337 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l  416 (637)
                      +++.|++++|.++......+..+++|++|++++|.+....|..+..+++|++|++++|.+... +..+   .++|++|++
T Consensus        53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~---~~~L~~L~l  128 (330)
T 1xku_A           53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEKM---PKTLQELRV  128 (330)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSSC---CTTCCEEEC
T ss_pred             CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-Chhh---cccccEEEC
Confidence            344444444444433333444444455555555555445567778888888888888888753 3322   268899999


Q ss_pred             CCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCc
Q 042944          417 SHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELP  496 (637)
Q Consensus       417 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  496 (637)
                      ++|.+++..+..+..+++|+.|++++|.+....                   ..+ ......++|++|++++|.++. +|
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------~~~-~~~~~l~~L~~L~l~~n~l~~-l~  187 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSG-------------------IEN-GAFQGMKKLSYIRIADTNITT-IP  187 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG-------------------BCT-TGGGGCTTCCEEECCSSCCCS-CC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccC-------------------cCh-hhccCCCCcCEEECCCCcccc-CC
Confidence            999888777777777887777777777664210                   111 111122778888888888874 45


Q ss_pred             hhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccC
Q 042944          497 DCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSI  576 (637)
Q Consensus       497 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~  576 (637)
                      ..+.  ++|++|++++|.+++        ..|..+..+++|++|++++|.+++..+..+. .+++|++|++++|+++ .+
T Consensus       188 ~~~~--~~L~~L~l~~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~-~l  255 (330)
T 1xku_A          188 QGLP--PSLTELHLDGNKITK--------VDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNKLV-KV  255 (330)
T ss_dssp             SSCC--TTCSEEECTTSCCCE--------ECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSCCS-SC
T ss_pred             cccc--ccCCEEECCCCcCCc--------cCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCcCc-cC
Confidence            4443  899999999999883        3356788999999999999999855454555 6999999999999999 88


Q ss_pred             CccccCCCCCcEeeCCCCcccccccccccc------cccceeeccCCCeeEE
Q 042944          577 PRNLCRLSKIQLLDFSLNSISGAIPKCINN------LTAMVEKASSNSTITH  622 (637)
Q Consensus       577 ~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~------l~~L~~l~l~~n~l~~  622 (637)
                      |..+..+++|++|++++|++++..+..|..      .+.|+.+++++|++..
T Consensus       256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             ChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            999999999999999999999777777754      4789999999999864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=1.1e-30  Score=285.25  Aligned_cols=231  Identities=16%  Similarity=0.117  Sum_probs=135.9

Q ss_pred             hcCCCCCcEEEcCCCCCCC---CCc--------cccccc-CCCCCccEEECCCCCCCchhhhHHHhhcCC-CcEEECCCC
Q 042944           84 ITSLASLRDLYLASSTLLS---INR--------PSLSSM-NSSTSLTLLDLSSCGLSNSAYHWLFKISSN-LLALDLNSN  150 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~~~~~---~~~--------~~~~~l-~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~-L~~L~L~~n  150 (637)
                      +..+++|++|+++++....   ..+        .++..+ ..+++|++|+|++|.+++..+..+...+++ |++|++++|
T Consensus        69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~  148 (592)
T 3ogk_B           69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC  148 (592)
T ss_dssp             HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred             HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence            5678899999998864321   111        011111 157889999998888887776666664466 899998887


Q ss_pred             CC-CC-CCCchhccCCCCCCEEEcCCCcccc-----hhhhcCCCCCCcEEEcCCCcCCCC----chhHhhhcccCCCCcc
Q 042944          151 QL-AG-PIPDYAFSNMTALQHLNLSLNQISA-----ISKSFGNMCGLKTLHLFDNNLTGQ----LPELFLNLSGCSKNSL  219 (637)
Q Consensus       151 ~l-~~-~l~~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~~~~~~L  219 (637)
                      .. .. .++. ...++++|++|++++|.+.+     ++..+.++++|++|++++|.+.+.    .+..+..++     +|
T Consensus       149 ~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~-----~L  222 (592)
T 3ogk_B          149 SGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCR-----SL  222 (592)
T ss_dssp             EEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCT-----TC
T ss_pred             CCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCC-----CC
Confidence            62 10 1111 23478888888888887654     334556778888888888887633    233444555     78


Q ss_pred             cEEEcCCCCCCCCcCCcccCCCccEEEccCCcCC---CCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccC
Q 042944          220 EILKLGGNKLTGSLPDITEFSSLQELHLFDNKLD---GSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSD  296 (637)
Q Consensus       220 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  296 (637)
                      ++|++++|.+...+..+..+++|++|++++....   ......+..+++|+.++++++...                   
T Consensus       223 ~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-------------------  283 (592)
T 3ogk_B          223 VSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-------------------  283 (592)
T ss_dssp             CEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-------------------
T ss_pred             cEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-------------------
Confidence            8888888776655545666777777777653221   112223344444444444443222                   


Q ss_pred             CcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEcc
Q 042944          297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFS  344 (637)
Q Consensus       297 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  344 (637)
                           ..+..+..+++|+.|++++|.+.+......+..+++|++|+++
T Consensus       284 -----~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          284 -----EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             -----TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             -----HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence                 3334444555555555555554433222234555566666555

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.1e-28  Score=245.59  Aligned_cols=248  Identities=24%  Similarity=0.413  Sum_probs=193.8

Q ss_pred             CceeEEeccCCcCCC--CccccccCCCCccEEEeeC-CCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCC
Q 042944          360 FQLESIGLLHCKLGP--HFPKWLQSQKNYYFLDISD-TEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYP  436 (637)
Q Consensus       360 ~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~  436 (637)
                      .+++.|++++|.+.+  ..|..+..+++|++|++++ |.+.+..|..+... ++|++|++++|.+++..+..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC-CCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            356666666666665  5666777777777777774 67766666666554 6777777777777766777777777777


Q ss_pred             eEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCc
Q 042944          437 GIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANN  513 (637)
Q Consensus       437 ~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  513 (637)
                      +|++++|.+.+..|..   +++|++|++++|++++..+.......+.|++|++++|.+++..|..+..++ |+.|++++|
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            7777777777655543   567788888888877655554443324899999999999888888898887 999999999


Q ss_pred             cCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCC
Q 042944          514 NFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSL  593 (637)
Q Consensus       514 ~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~  593 (637)
                      .+++        ..|..+..+++|++|++++|.+++.++. +. .+++|++|++++|++++.+|..+..+++|++|++++
T Consensus       208 ~l~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          208 MLEG--------DASVLFGSDKNTQKIHLAKNSLAFDLGK-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             EEEE--------CCGGGCCTTSCCSEEECCSSEECCBGGG-CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             cccC--------cCCHHHhcCCCCCEEECCCCceeeecCc-cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence            9873        4566788899999999999999855554 44 689999999999999988999999999999999999


Q ss_pred             CcccccccccccccccceeeccCCCee
Q 042944          594 NSISGAIPKCINNLTAMVEKASSNSTI  620 (637)
Q Consensus       594 n~l~~~~p~~l~~l~~L~~l~l~~n~l  620 (637)
                      |++++.+|.. ..+++|+.+++++|+.
T Consensus       278 N~l~~~ip~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          278 NNLCGEIPQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             SEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred             CcccccCCCC-ccccccChHHhcCCCC
Confidence            9999888876 8899999999999973

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.1e-29  Score=277.34  Aligned_cols=302  Identities=13%  Similarity=-0.004  Sum_probs=173.7

Q ss_pred             cCCCCCccEEECCCCCCC-----------c---hhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC-CCC-CCEEEcCC
Q 042944          111 MNSSTSLTLLDLSSCGLS-----------N---SAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN-MTA-LQHLNLSL  174 (637)
Q Consensus       111 l~~l~~L~~L~L~~n~i~-----------~---~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~-l~~-L~~L~L~~  174 (637)
                      +..+++|++|+++++...           +   .....+...+++|++|++++|.+++.... .+.. ++. |++|++++
T Consensus        69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B           69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD-RLAKARADDLETLKLDK  147 (592)
T ss_dssp             HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEEEEES
T ss_pred             HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH-HHHHhccccCcEEECcC
Confidence            445688999999775321           0   11223343448888888888877633222 3433 334 88888888


Q ss_pred             Cc-ccc--hhhhcCCCCCCcEEEcCCCcCCCCc----hhHhhhcccCCCCcccEEEcCCCCCCCCc-----CCcccCCCc
Q 042944          175 NQ-ISA--ISKSFGNMCGLKTLHLFDNNLTGQL----PELFLNLSGCSKNSLEILKLGGNKLTGSL-----PDITEFSSL  242 (637)
Q Consensus       175 n~-l~~--l~~~~~~l~~L~~L~l~~n~i~~~~----~~~l~~l~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~~~L  242 (637)
                      |. +..  ++....++++|++|++++|.+.+..    +..+..++     +|++|++++|.+....     ..+..+++|
T Consensus       148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~-----~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L  222 (592)
T 3ogk_B          148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT-----SLEVLNFYMTEFAKISPKDLETIARNCRSL  222 (592)
T ss_dssp             CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC-----CCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred             CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC-----CccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence            76 222  4444557788888888888776553    23344455     7777777777765211     113345566


Q ss_pred             cEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCc
Q 042944          243 QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNS  322 (637)
Q Consensus       243 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  322 (637)
                      ++|++++|.+.+ .+..+..+++|+.|+++.......                    .......+..+++|+.++++++.
T Consensus       223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~--------------------~~~~~~~l~~~~~L~~L~l~~~~  281 (592)
T 3ogk_B          223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIG--------------------MPEKYMNLVFPRKLCRLGLSYMG  281 (592)
T ss_dssp             CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTT--------------------CTTSSSCCCCCTTCCEEEETTCC
T ss_pred             cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccc--------------------hHHHHHHhhccccccccCccccc
Confidence            666666665543 234444455555555543211100                    01223446677889999998864


Q ss_pred             CCCccchhhhcCCCCCcEEEccCCccccccc-CCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeC--------
Q 042944          323 LEGMITESHVSNLSKLKYMDFSFNSLALNFS-FGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISD--------  393 (637)
Q Consensus       323 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~--------  393 (637)
                      ... . ...+..+++|++|++++|.+..... ..+..+++|++|++.++.....++.....+++|++|++++        
T Consensus       282 ~~~-l-~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~  359 (592)
T 3ogk_B          282 PNE-M-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGME  359 (592)
T ss_dssp             TTT-G-GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred             hhH-H-HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccc
Confidence            432 2 3367789999999999998754333 2235566777777763322222333345567777777773        


Q ss_pred             ---CCCCCccchhhhhcCCCccEEECCCCcCCCcccccccC-CCCCCeEeCC
Q 042944          394 ---TEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLN-YAGYPGIDLS  441 (637)
Q Consensus       394 ---n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-~~~L~~L~l~  441 (637)
                         +.+++.....+...+++|++|+++.+.+++.....+.. +++|+.|+++
T Consensus       360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence               34544444444444567777777666666544444433 5555555554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=8.3e-28  Score=239.21  Aligned_cols=248  Identities=24%  Similarity=0.346  Sum_probs=174.2

Q ss_pred             CCCCEEecCCCcCCC--ccchhhhcCCCCCcEEEccC-CcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCcc
Q 042944          311 SKLEFLDLFGNSLEG--MITESHVSNLSKLKYMDFSF-NSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYY  387 (637)
Q Consensus       311 ~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~  387 (637)
                      .+++.|++++|.+.+  ..+. .+.++++|++|++++ |.+....                        |..+..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~------------------------p~~l~~l~~L~  104 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPI------------------------PPAIAKLTQLH  104 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG-GGGGCTTCSEEEEEEETTEESCC------------------------CGGGGGCTTCS
T ss_pred             ceEEEEECCCCCccCCcccCh-hHhCCCCCCeeeCCCCCcccccC------------------------ChhHhcCCCCC
Confidence            456677777776665  3443 566666666666663 5555444                        44455555555


Q ss_pred             EEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CC-CccEEEccc
Q 042944          388 FLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PG-NVTSLNLSN  463 (637)
Q Consensus       388 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~-~L~~L~L~~  463 (637)
                      +|++++|.+.+..+..+... ++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..   ++ +|++|++++
T Consensus       105 ~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~  183 (313)
T 1ogq_A          105 YLYITHTNVSGAIPDFLSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR  183 (313)
T ss_dssp             EEEEEEECCEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS
T ss_pred             EEECcCCeeCCcCCHHHhCC-CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC
Confidence            55555555554444444333 55555555555555555555555555555555555555444332   22 667777777


Q ss_pred             ccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcC
Q 042944          464 NKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAG  543 (637)
Q Consensus       464 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls  543 (637)
                      |++++..+......  .|++|++++|.+++..+..+..+++|+.|++++|.+++         .+..+..+++|++|+++
T Consensus       184 N~l~~~~~~~~~~l--~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---------~~~~~~~l~~L~~L~Ls  252 (313)
T 1ogq_A          184 NRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF---------DLGKVGLSKNLNGLDLR  252 (313)
T ss_dssp             SEEEEECCGGGGGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC---------BGGGCCCCTTCCEEECC
T ss_pred             CeeeccCChHHhCC--cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee---------ecCcccccCCCCEEECc
Confidence            77766555544432  39999999999998899999999999999999999883         33336778999999999


Q ss_pred             CCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944          544 DNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS  597 (637)
Q Consensus       544 ~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~  597 (637)
                      +|.+++.+|..+. .+++|+.|+|++|++++.+|.. ..+++|+.+++++|+..
T Consensus       253 ~N~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          253 NNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             SSCCEECCCGGGG-GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred             CCcccCcCChHHh-cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence            9999988998887 6999999999999999889876 88999999999999844

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=3.1e-27  Score=235.76  Aligned_cols=238  Identities=16%  Similarity=0.145  Sum_probs=180.0

Q ss_pred             CCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeE
Q 042944          359 PFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGI  438 (637)
Q Consensus       359 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L  438 (637)
                      +++|++|++++|.+....+..+..+++|++|++++|.+.+..+  +. .+++|++|++++|.+++..     ..++|+.|
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~-~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L  104 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ET-TCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hh-hcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence            3444455555555544555566677777777777777665443  22 2367777777777765432     23677888


Q ss_pred             eCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhh-hccCCCcEEeccCccCCC
Q 042944          439 DLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCL-LRWQALAVLNLANNNFSG  517 (637)
Q Consensus       439 ~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~  517 (637)
                      ++++|.+.+..+..+++|++|++++|++++..+.... ..++|++|++++|.+++..+..+ ..+++|++|++++|.++ 
T Consensus       105 ~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-  182 (317)
T 3o53_A          105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-  182 (317)
T ss_dssp             ECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-
T ss_pred             ECCCCccCCcCccccCCCCEEECCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-
Confidence            8888877776666678889999999988876554332 23899999999999997777766 47899999999999988 


Q ss_pred             CccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944          518 NFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS  597 (637)
Q Consensus       518 ~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~  597 (637)
                              .++. ...+++|++|++++|.++ .+|..+. .+++|+.|++++|+++ .+|..+..+++|+.|++++|++.
T Consensus       183 --------~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          183 --------DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             --------EEEC-CCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             --------cccc-ccccccCCEEECCCCcCC-cchhhhc-ccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence                    3332 234889999999999998 6666665 6999999999999998 67888999999999999999998


Q ss_pred             -ccccccccccccceeeccCCC
Q 042944          598 -GAIPKCINNLTAMVEKASSNS  618 (637)
Q Consensus       598 -~~~p~~l~~l~~L~~l~l~~n  618 (637)
                       +.+|..+..+++|+.++++++
T Consensus       251 ~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          251 CGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CcCHHHHHhccccceEEECCCc
Confidence             788889999999999988733

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.7e-28  Score=268.10  Aligned_cols=427  Identities=13%  Similarity=0.046  Sum_probs=205.4

Q ss_pred             hhcCCCCCcEEEcCCCCCCCCC---cc--------cccc-cCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCC
Q 042944           83 TITSLASLRDLYLASSTLLSIN---RP--------SLSS-MNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSN  150 (637)
Q Consensus        83 ~~~~~~~L~~L~l~~~~~~~~~---~~--------~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n  150 (637)
                      .+..+++|++|+++++......   +.        ++.. ...+++|++|++++|.+++..+..+.+.+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            3567888999999887532110   00        0111 2246788888888888777666666644488888888877


Q ss_pred             -CCCCC-CCchhccCCCCCCEEEcCCCcccc-----hhhhcCCCCCCcEEEcCCCcCCCCchhHh----hhcccCCCCcc
Q 042944          151 -QLAGP-IPDYAFSNMTALQHLNLSLNQISA-----ISKSFGNMCGLKTLHLFDNNLTGQLPELF----LNLSGCSKNSL  219 (637)
Q Consensus       151 -~l~~~-l~~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~l~~n~i~~~~~~~l----~~l~~~~~~~L  219 (637)
                       .+... ++. .+.++++|++|++++|.++.     ++.....+++|++|++++|. .......+    ..++     +|
T Consensus       141 ~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~-----~L  213 (594)
T 2p1m_B          141 EGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCP-----NL  213 (594)
T ss_dssp             EEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCT-----TC
T ss_pred             CCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCC-----CC
Confidence             44311 222 34467888888888887655     33334467788888888776 21222333    2334     77


Q ss_pred             cEEEcCCCC-CCCCcCCcccCCCccEEEccCCcC-------CCCCCCcCCCCCCCcEE-EcCCCCCCCCCCCCCCCCCCC
Q 042944          220 EILKLGGNK-LTGSLPDITEFSSLQELHLFDNKL-------DGSFPEKFRKPSPLVIL-NLDGNQLWGSLPDLSVFPFLT  290 (637)
Q Consensus       220 ~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~i-------~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~~~~L~  290 (637)
                      ++|++++|. +......+..+++|++|++..+..       .+ .+..+.++++|+.+ .+.....              
T Consensus       214 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~--------------  278 (594)
T 2p1m_B          214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP--------------  278 (594)
T ss_dssp             CEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG--------------
T ss_pred             cEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch--------------
Confidence            777777762 222222344556677776554421       11 11123444444444 2221111              


Q ss_pred             EEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCC-CCCCCceeEEeccC
Q 042944          291 RLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFG-WLPPFQLESIGLLH  369 (637)
Q Consensus       291 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~L~~L~l~~  369 (637)
                                ..++..+..+++|+.|++++|.+.+......+..+++|++|++++| +....... ...+++|++|++.+
T Consensus       279 ----------~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~  347 (594)
T 2p1m_B          279 ----------AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP  347 (594)
T ss_dssp             ----------GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             ----------hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence                      1122222234455555555554433222222344455555555544 22111000 01122333333322


Q ss_pred             C---------cCCCCccccc-cCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECC--C----CcCCCcc-----ccc
Q 042944          370 C---------KLGPHFPKWL-QSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLS--H----NHLEGTV-----LDL  428 (637)
Q Consensus       370 ~---------~~~~~~~~~l-~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~--~----n~i~~~~-----~~~  428 (637)
                      |         .++......+ ..+++|+.|.+..+.+++.....+...+++|++|+++  +    +.+++..     +..
T Consensus       348 ~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l  427 (594)
T 2p1m_B          348 SEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI  427 (594)
T ss_dssp             SCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHH
T ss_pred             CcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHH
Confidence            1         1111111111 2355566665555555554444444334556655555  2    2232110     011


Q ss_pred             ccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhh-hccCCCcE
Q 042944          429 SLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCL-LRWQALAV  507 (637)
Q Consensus       429 ~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~  507 (637)
                      +..+                     ++|++|++++ .+++..........++|+.|++++|.+++..+..+ ..+++|++
T Consensus       428 ~~~~---------------------~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~  485 (594)
T 2p1m_B          428 VEHC---------------------KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK  485 (594)
T ss_dssp             HHHC---------------------TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCE
T ss_pred             HhhC---------------------CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCE
Confidence            2222                     3444444433 22222111111112566666666666654444333 55677777


Q ss_pred             EeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcc
Q 042944          508 LNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQ  571 (637)
Q Consensus       508 L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~  571 (637)
                      |++++|.+++..       +......+++|++|++++|.++......+.+.+|+|+...+..+.
T Consensus       486 L~L~~n~~~~~~-------~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          486 LEIRDCPFGDKA-------LLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             EEEESCSCCHHH-------HHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             EECcCCCCcHHH-------HHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            777777664221       112234456677777777766533333443456666655555544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.2e-24  Score=233.98  Aligned_cols=269  Identities=23%  Similarity=0.282  Sum_probs=148.1

Q ss_pred             CccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCC
Q 042944          241 SLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFG  320 (637)
Q Consensus       241 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  320 (637)
                      +++.|++++|.++ ..|..+.  ++|+.|++++|.++....   .+++|++|++++|.++. +|.   .+++|+.|++++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~  110 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFS  110 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECS
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcC
Confidence            5677777777776 3344333  566666666666653332   34556666666666553 222   345555555555


Q ss_pred             CcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCcc
Q 042944          321 NSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAV  400 (637)
Q Consensus       321 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~  400 (637)
                      |.+.+...     .+++|+.|++++|.++                        . +|.   .+++|++|++++|.+.+..
T Consensus       111 N~l~~l~~-----~l~~L~~L~L~~N~l~------------------------~-lp~---~l~~L~~L~Ls~N~l~~l~  157 (622)
T 3g06_A          111 NPLTHLPA-----LPSGLCKLWIFGNQLT------------------------S-LPV---LPPGLQELSVSDNQLASLP  157 (622)
T ss_dssp             CCCCCCCC-----CCTTCCEEECCSSCCS------------------------C-CCC---CCTTCCEEECCSSCCSCCC
T ss_pred             CcCCCCCC-----CCCCcCEEECCCCCCC------------------------c-CCC---CCCCCCEEECcCCcCCCcC
Confidence            55544211     2344444444444433                        1 121   1255666666666655422


Q ss_pred             chhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCC
Q 042944          401 PSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEY  480 (637)
Q Consensus       401 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~  480 (637)
                      .     .+++|+.|++++|.+++..    ..+++|+.|++++|.+.+ .+..+                         ++
T Consensus       158 ~-----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~~~~-------------------------~~  202 (622)
T 3g06_A          158 A-----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LPTLP-------------------------SE  202 (622)
T ss_dssp             C-----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCCCC-------------------------TT
T ss_pred             C-----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CCCcc-------------------------ch
Confidence            1     1245666666666655422    233445555555544443 12223                         45


Q ss_pred             ccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCC
Q 042944          481 FSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLP  560 (637)
Q Consensus       481 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~  560 (637)
                      |+.|++++|.++ .+|.   .+++|+.|++++|.++         .+|   ..+++|++|++++|.++ .+|.    .++
T Consensus       203 L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~---------~lp---~~l~~L~~L~Ls~N~L~-~lp~----~~~  261 (622)
T 3g06_A          203 LYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT---------SLP---VLPSELKELMVSGNRLT-SLPM----LPS  261 (622)
T ss_dssp             CCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS---------CCC---CCCTTCCEEECCSSCCS-CCCC----CCT
T ss_pred             hhEEECcCCccc-ccCC---CCCCCCEEEccCCccC---------cCC---CCCCcCcEEECCCCCCC-cCCc----ccc
Confidence            555555555555 2332   1356777777777666         344   23466777777777776 5555    356


Q ss_pred             CCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccccccc
Q 042944          561 KLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTA  609 (637)
Q Consensus       561 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~  609 (637)
                      +|+.|+|++|+++ .+|..+..+++|+.|++++|++++..|..|..+++
T Consensus       262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS  309 (622)
T ss_dssp             TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred             cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence            7777777777776 56666777777777777777777666666655543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=6.4e-26  Score=225.48  Aligned_cols=229  Identities=28%  Similarity=0.330  Sum_probs=171.3

Q ss_pred             CCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchh--hhHHHhhcCCCcEEECCCCCCCCCCCchhccCC
Q 042944           87 LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSA--YHWLFKISSNLLALDLNSNQLAGPIPDYAFSNM  164 (637)
Q Consensus        87 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~--~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l  164 (637)
                      .+++++|++++|.++.+.+   ..+.++++|++|++++|.+....  +..+... ++|++|++++|.+. .++. .+..+
T Consensus        27 ~~~l~~L~L~~n~l~~i~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~-~l~~-~~~~l  100 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPH---GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVI-TMSS-NFLGL  100 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC-SCCCEEECCSCSEE-EEEE-EEETC
T ss_pred             CCCCCEEECCCCccCccCH---hHhhccccCCEEECCCCccCcccCcccccccc-cccCEEECCCCccc-cChh-hcCCC
Confidence            3578888888888887753   34567788889999888887442  4456665 88888888888887 7776 57888


Q ss_pred             CCCCEEEcCCCcccchhh--hcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC--CcCCcccCC
Q 042944          165 TALQHLNLSLNQISAISK--SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG--SLPDITEFS  240 (637)
Q Consensus       165 ~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~  240 (637)
                      ++|++|++++|+++.++.  .+..+++|++|++++|.+.+..+..+..++     +|++|++++|.+..  .+..+..++
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~~l~  175 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-----SLEVLKMAGNSFQENFLPDIFTELR  175 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-----TCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-----CCCEEECCCCccccccchhHHhhCc
Confidence            888888888888888653  688888888888888888777777777777     88888888887764  344567777


Q ss_pred             CccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCC-CCCEEec
Q 042944          241 SLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLS-KLEFLDL  318 (637)
Q Consensus       241 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l  318 (637)
                      +|++|++++|.+++..+..+..+++|++|++++|.+....+. +..+++|++|++++|.+.+..+..+..++ +|+.|++
T Consensus       176 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L  255 (306)
T 2z66_A          176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  255 (306)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEEC
T ss_pred             CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEc
Confidence            888888888877766677777777777777777777655442 34467777777777777766666666664 6777777


Q ss_pred             CCCcCCCc
Q 042944          319 FGNSLEGM  326 (637)
Q Consensus       319 ~~n~~~~~  326 (637)
                      ++|.+...
T Consensus       256 ~~N~~~~~  263 (306)
T 2z66_A          256 TQNDFACT  263 (306)
T ss_dssp             TTCCEECS
T ss_pred             cCCCeecc
Confidence            77776643

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=6.9e-26  Score=226.67  Aligned_cols=236  Identities=17%  Similarity=0.175  Sum_probs=173.1

Q ss_pred             ceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeC
Q 042944          361 QLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDL  440 (637)
Q Consensus       361 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l  440 (637)
                      .++.|++++|.+. .+|..+..+++|++|++++|.+. ..|..+... ++|++|++++|.++ .++..+..+++|+.|++
T Consensus        82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l-~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF-AGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG-TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhcc-CCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            3444444444444 34444555666666666666666 344444443 66666666666666 44555666666666666


Q ss_pred             CCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCcc
Q 042944          441 SSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFL  520 (637)
Q Consensus       441 ~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  520 (637)
                      ++|++.+..|..+.   ...+.+.          ....++|++|++++|.++ .+|..+..+++|++|++++|.++    
T Consensus       158 ~~n~~~~~~p~~~~---~~~~~~~----------~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~----  219 (328)
T 4fcg_A          158 RACPELTELPEPLA---STDASGE----------HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS----  219 (328)
T ss_dssp             EEETTCCCCCSCSE---EEC-CCC----------EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC----
T ss_pred             CCCCCccccChhHh---hccchhh----------hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC----
Confidence            66655554443221   1111100          112288889999998888 77888999999999999999988    


Q ss_pred             ccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccc
Q 042944          521 TFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAI  600 (637)
Q Consensus       521 ~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~  600 (637)
                           .+|..+..+++|++|++++|.+.+.+|..+. .+++|++|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+
T Consensus       220 -----~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          220 -----ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             -----CCCGGGGGCTTCCEEECTTCTTCCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             -----cCchhhccCCCCCEEECcCCcchhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence                 6777888999999999999998888888777 6999999999999988899999999999999999999999999


Q ss_pred             cccccccccceeeccCCCeeEEEE
Q 042944          601 PKCINNLTAMVEKASSNSTITHIY  624 (637)
Q Consensus       601 p~~l~~l~~L~~l~l~~n~l~~~~  624 (637)
                      |+.+.++++|+.+++..+.+..+.
T Consensus       294 P~~l~~L~~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          294 PSLIAQLPANCIILVPPHLQAQLD  317 (328)
T ss_dssp             CGGGGGSCTTCEEECCGGGSCC--
T ss_pred             cHHHhhccCceEEeCCHHHHHHHh
Confidence            999999999999999988776654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.5e-25  Score=222.85  Aligned_cols=276  Identities=24%  Similarity=0.259  Sum_probs=160.2

Q ss_pred             cEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch---hhhcCCCCCCcEEE
Q 042944          118 TLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI---SKSFGNMCGLKTLH  194 (637)
Q Consensus       118 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~  194 (637)
                      +.++++++.++.. |..+   .++|++|++++|.+. .++...|.++++|++|++++|+++.+   +..+.++++|++|+
T Consensus        10 ~~l~c~~~~l~~i-p~~~---~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A           10 TEIRCNSKGLTSV-PTGI---PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             TEEECCSSCCSSC-CSCC---CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CEEEcCCCCcccC-CCCC---CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            4677777766633 3222   256777777777776 67765677777777777777777654   45566677777777


Q ss_pred             cCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC--CcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcC
Q 042944          195 LFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP--DITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD  272 (637)
Q Consensus       195 l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  272 (637)
                      +++|.+. ..+..+..++     +|++|++++|.+....+  .+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus        85 Ls~n~i~-~l~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  158 (306)
T 2z66_A           85 LSFNGVI-TMSSNFLGLE-----QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA  158 (306)
T ss_dssp             CCSCSEE-EEEEEEETCT-----TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT
T ss_pred             CCCCccc-cChhhcCCCC-----CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC
Confidence            7777766 3444455555     67777777766664432  45556666666666666665555556666666666666


Q ss_pred             CCCCCC--CCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccc
Q 042944          273 GNQLWG--SLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLAL  350 (637)
Q Consensus       273 ~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  350 (637)
                      +|.+.+  ....+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+. 
T Consensus       159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~-  236 (306)
T 2z66_A          159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIM-  236 (306)
T ss_dssp             TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCC-
T ss_pred             CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCc-
Confidence            666543  22233335556666666655555445555555555555555555554222 23444555555555555444 


Q ss_pred             cccCCCCCCCceeEEeccCCcCCCCccccccCC-CCccEEEeeCCCCCCccc-hhhhhcCCCccEEECCCCcCCCccccc
Q 042944          351 NFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQ-KNYYFLDISDTEISDAVP-SWFWDLSPNLYYLNLSHNHLEGTVLDL  428 (637)
Q Consensus       351 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~i~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~  428 (637)
                                             +..+..+..+ ++|++|++++|.+..... .++...+...+.+.+..+.+....|..
T Consensus       237 -----------------------~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~  293 (306)
T 2z66_A          237 -----------------------TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD  293 (306)
T ss_dssp             -----------------------BCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred             -----------------------ccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence                                   3444455555 367777777777655422 233333334444555555555444443


Q ss_pred             c
Q 042944          429 S  429 (637)
Q Consensus       429 ~  429 (637)
                      +
T Consensus       294 ~  294 (306)
T 2z66_A          294 K  294 (306)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=5.1e-25  Score=223.53  Aligned_cols=282  Identities=21%  Similarity=0.198  Sum_probs=189.6

Q ss_pred             cccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccC
Q 042944          218 SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSD  296 (637)
Q Consensus       218 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~  296 (637)
                      .....+.+++.++..+..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+. +..+++|++|++++
T Consensus        32 ~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY  109 (353)
T ss_dssp             TTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence            44556677777775554433  4788888888888766666788888888888888888766554 45588888888888


Q ss_pred             CcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCc-ccccccCCCCCCCceeEEeccCCcCCCC
Q 042944          297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNS-LALNFSFGWLPPFQLESIGLLHCKLGPH  375 (637)
Q Consensus       297 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~  375 (637)
                      |.+++..+..+..+++|+.|++++|.+.+......+.++++|++|++++|. +....+..+..+++|++|++++|.+...
T Consensus       110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence            888876666688888888888888888764332467888888888888884 6655566777778888888888887776


Q ss_pred             ccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCC
Q 042944          376 FPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGN  455 (637)
Q Consensus       376 ~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~  455 (637)
                      .+..+..+++|++|++++|.+.. .+..+...+++|++|++++|.+++..+..+...                  .....
T Consensus       190 ~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~------------------~~~~~  250 (353)
T 2z80_A          190 EPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLDTFHFSELSTG------------------ETNSL  250 (353)
T ss_dssp             CTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCTTCCCC------------------------CCCC
T ss_pred             CHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCccccccccccccc------------------cccch
Confidence            67778888888888888888754 333344445778888887777765432211100                  01123


Q ss_pred             ccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcc-ccCC
Q 042944          456 VTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPS-LKKC  534 (637)
Q Consensus       456 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~-l~~l  534 (637)
                      ++.++++++.+.                    ++.+. .+|..+..+++|+.|++++|+++         .+|.. +..+
T Consensus       251 l~~l~L~~~~l~--------------------~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~---------~i~~~~~~~l  300 (353)
T 2z80_A          251 IKKFTFRNVKIT--------------------DESLF-QVMKLLNQISGLLELEFSRNQLK---------SVPDGIFDRL  300 (353)
T ss_dssp             CCEEEEESCBCC--------------------HHHHH-HHHHHHHTCTTCCEEECCSSCCC---------CCCTTTTTTC
T ss_pred             hhcccccccccc--------------------Ccchh-hhHHHHhcccCCCEEECCCCCCC---------ccCHHHHhcC
Confidence            334444333322                    11111 34566777777777777777776         45554 3667


Q ss_pred             CCCcEEEcCCCccccc
Q 042944          535 NELKIIDAGDNKFSGT  550 (637)
Q Consensus       535 ~~L~~L~ls~n~l~~~  550 (637)
                      ++|++|++++|++.+.
T Consensus       301 ~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          301 TSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             TTCCEEECCSSCBCCC
T ss_pred             CCCCEEEeeCCCccCc
Confidence            7777777777777643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.1e-24  Score=230.78  Aligned_cols=200  Identities=21%  Similarity=0.270  Sum_probs=151.4

Q ss_pred             CCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEc
Q 042944          382 SQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNL  461 (637)
Q Consensus       382 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L  461 (637)
                      .+++|++|++++|.+.+...     .+++|+.|++++|.+++...    .+++|++|++++|.+.+. +..+++|+.|++
T Consensus        99 ~l~~L~~L~Ls~N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L  168 (622)
T 3g06_A           99 LPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PALPSELCKLWA  168 (622)
T ss_dssp             CCTTCCEEEECSCCCCCCCC-----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CCCCTTCCEEEC
T ss_pred             CCCCCCEEECcCCcCCCCCC-----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-CCccCCCCEEEC
Confidence            34555566666665554322     23566666666666664322    236677777777776653 345678888888


Q ss_pred             ccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEE
Q 042944          462 SNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIID  541 (637)
Q Consensus       462 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~  541 (637)
                      ++|+++...     ...++|+.|++++|.+++ +|..   .++|+.|++++|.++         .+|..   +++|++|+
T Consensus       169 ~~N~l~~l~-----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~---------~l~~~---~~~L~~L~  227 (622)
T 3g06_A          169 YNNQLTSLP-----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT---------SLPAL---PSGLKELI  227 (622)
T ss_dssp             CSSCCSCCC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS---------SCCCC---CTTCCEEE
T ss_pred             CCCCCCCCc-----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc---------ccCCC---CCCCCEEE
Confidence            888887643     122889999999999884 4432   489999999999998         55543   47899999


Q ss_pred             cCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeE
Q 042944          542 AGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTIT  621 (637)
Q Consensus       542 ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~  621 (637)
                      +++|.++ .+|.    .+++|+.|+|++|.++ .+|.   .+++|+.|++++|.++ .+|..|..+++|+.|++++|+++
T Consensus       228 Ls~N~L~-~lp~----~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          228 VSGNRLT-SLPV----LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCSSCCS-CCCC----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred             ccCCccC-cCCC----CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence            9999998 6772    5789999999999998 6776   5789999999999999 78999999999999999999986


Q ss_pred             E
Q 042944          622 H  622 (637)
Q Consensus       622 ~  622 (637)
                      .
T Consensus       298 ~  298 (622)
T 3g06_A          298 E  298 (622)
T ss_dssp             H
T ss_pred             C
Confidence            4

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=2.6e-28  Score=266.50  Aligned_cols=256  Identities=22%  Similarity=0.197  Sum_probs=165.4

Q ss_pred             hcCCCCCcEEEcCCCCCCCCCcccccccC-CCCCccEEECCCC-CCCchhhhHHHhhcCCCcEEECCCCCCCCCCCc---
Q 042944           84 ITSLASLRDLYLASSTLLSINRPSLSSMN-SSTSLTLLDLSSC-GLSNSAYHWLFKISSNLLALDLNSNQLAGPIPD---  158 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~l~~L~~L~L~~n-~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~---  158 (637)
                      ...+++|++|+++++.+++...   ..+. .+++|++|++++| .+++.....+...+++|++|++++|.+++..+.   
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~---~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~  177 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCL---ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS  177 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHH---HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred             HHhCCCCCeEEeeCcEEcHHHH---HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence            3578899999999998776543   4443 5799999999999 566554555665559999999999987632221   


Q ss_pred             hhccCCCCCCEEEcCCCc--ccc--hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCC-----
Q 042944          159 YAFSNMTALQHLNLSLNQ--ISA--ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKL-----  229 (637)
Q Consensus       159 ~~~~~l~~L~~L~L~~n~--l~~--l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~-----  229 (637)
                      .....+++|++|++++|.  +..  ++..+.++++|++|++++|......+..+..++     +|+.|+++.+..     
T Consensus       178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~-----~L~~L~l~~~~~~~~~~  252 (594)
T 2p1m_B          178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP-----QLEELGTGGYTAEVRPD  252 (594)
T ss_dssp             GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT-----TCSEEECSBCCCCCCHH
T ss_pred             HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC-----cceEcccccccCccchh
Confidence            123477899999999997  332  444456689999999999943334677788888     999999876643     


Q ss_pred             --CCCcCCcccCCCccEE-EccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCC-CC-CCCCCCCCEEEccCCcCCCC-C
Q 042944          230 --TGSLPDITEFSSLQEL-HLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL-PD-LSVFPFLTRLDVSDSRLNGT-V  303 (637)
Q Consensus       230 --~~~~~~~~~~~~L~~L-~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~-~~~~~~L~~L~l~~n~~~~~-~  303 (637)
                        ....+.+..+++|+.| .+.+.... ..+..+..+++|++|++++|.+.... .. +..+++|++|++++| +.+. .
T Consensus       253 ~~~~l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l  330 (594)
T 2p1m_B          253 VYSGLSVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGL  330 (594)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHH
T ss_pred             hHHHHHHHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHH
Confidence              1223346778899998 34433221 23333345688888888888764321 11 234677888888777 3321 2


Q ss_pred             hhhhcCCCCCCEEecCC---------CcCCCccchhhhcCCCCCcEEEccCCccc
Q 042944          304 SEGLGRLSKLEFLDLFG---------NSLEGMITESHVSNLSKLKYMDFSFNSLA  349 (637)
Q Consensus       304 ~~~l~~l~~L~~L~l~~---------n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  349 (637)
                      +.....+++|+.|++.+         +.+++........++++|++|.+..+.++
T Consensus       331 ~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~  385 (594)
T 2p1m_B          331 EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT  385 (594)
T ss_dssp             HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred             HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence            22223467777777733         23332222222234666666666555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=7e-25  Score=222.56  Aligned_cols=277  Identities=21%  Similarity=0.203  Sum_probs=159.3

Q ss_pred             CCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcE
Q 042944          114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKT  192 (637)
Q Consensus       114 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~  192 (637)
                      |+.....+++++.++. .|..+   .++|++|++++|.++ .++...+.++++|++|++++|+++.+ +..|.++++|++
T Consensus        30 C~~~~~c~~~~~~l~~-iP~~~---~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           30 CDRNGICKGSSGSLNS-IPSGL---TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             ECTTSEEECCSTTCSS-CCTTC---CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCeEeeCCCCCccc-ccccc---cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            3455557777777764 33322   256777777777776 66655677777777777777777775 456777777777


Q ss_pred             EEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcC--CcccCCCccEEEccCCc-CCCCCCCcCCCCCCCcEE
Q 042944          193 LHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLP--DITEFSSLQELHLFDNK-LDGSFPEKFRKPSPLVIL  269 (637)
Q Consensus       193 L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L  269 (637)
                      |++++|.+.+..+..+..++     +|++|++++|.+...+.  .+..+++|++|++++|. ++...+..+..       
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-------  172 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLS-----SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-------  172 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCT-----TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT-------
T ss_pred             EECCCCcCCcCCHhHhCCCc-----cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccC-------
Confidence            77777777755555566666     77777777776664433  34455555555555552 33333334444       


Q ss_pred             EcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCccc
Q 042944          270 NLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA  349 (637)
Q Consensus       270 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  349 (637)
                                      +++|++|++++|.+.+..+..+..+++|+.|++++|.+.. .+...+..+++|++|++++|.+.
T Consensus       173 ----------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          173 ----------------LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL-LLEIFVDVTSSVECLELRDTDLD  235 (353)
T ss_dssp             ----------------CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT-HHHHHHHHTTTEEEEEEESCBCT
T ss_pred             ----------------CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc-chhhhhhhcccccEEECCCCccc
Confidence                            4455555555555554455556666666666666666643 33334555666777777766665


Q ss_pred             ccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCc----cchhhhhcCCCccEEECCCCcCCCcc
Q 042944          350 LNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDA----VPSWFWDLSPNLYYLNLSHNHLEGTV  425 (637)
Q Consensus       350 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~----~~~~~~~~~~~L~~L~l~~n~i~~~~  425 (637)
                      ......+.                     .......++.++++++.+.+.    .+.++.. +++|++|++++|.++...
T Consensus       236 ~~~~~~l~---------------------~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~-l~~L~~L~Ls~N~l~~i~  293 (353)
T 2z80_A          236 TFHFSELS---------------------TGETNSLIKKFTFRNVKITDESLFQVMKLLNQ-ISGLLELEFSRNQLKSVP  293 (353)
T ss_dssp             TCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHT-CTTCCEEECCSSCCCCCC
T ss_pred             cccccccc---------------------cccccchhhccccccccccCcchhhhHHHHhc-ccCCCEEECCCCCCCccC
Confidence            33221110                     012234455556665555442    1222222 356666666666666444


Q ss_pred             cccccCCCCCCeEeCCCCcCc
Q 042944          426 LDLSLNYAGYPGIDLSSNDFE  446 (637)
Q Consensus       426 ~~~~~~~~~L~~L~l~~n~~~  446 (637)
                      ...+..+++|++|++++|++.
T Consensus       294 ~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          294 DGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSCBC
T ss_pred             HHHHhcCCCCCEEEeeCCCcc
Confidence            443455555555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=2.9e-24  Score=224.71  Aligned_cols=112  Identities=20%  Similarity=0.180  Sum_probs=52.4

Q ss_pred             hhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCC
Q 042944          498 CLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIP  577 (637)
Q Consensus       498 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~  577 (637)
                      .|.++++|+.|++++|.++         .+| .+..+++|++|++++|.+++..+..+. .+++|+.|+|++|++++..+
T Consensus       180 ~~~~l~~L~~L~L~~n~l~---------~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~  248 (440)
T 3zyj_A          180 AFEGLSNLRYLNLAMCNLR---------EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIER  248 (440)
T ss_dssp             TTTTCSSCCEEECTTSCCS---------SCC-CCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECT
T ss_pred             hhhcccccCeecCCCCcCc---------ccc-ccCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEECh
Confidence            4444445555555555444         222 134444455555555555422232222 34555555555555544444


Q ss_pred             ccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCee
Q 042944          578 RNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTI  620 (637)
Q Consensus       578 ~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l  620 (637)
                      ..|..+++|+.|+|++|++++..+..|..+++|++|++++|++
T Consensus       249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            4444455555555555555444444444455555555555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=9.4e-25  Score=214.57  Aligned_cols=222  Identities=26%  Similarity=0.281  Sum_probs=150.1

Q ss_pred             cEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEE
Q 042944           91 RDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHL  170 (637)
Q Consensus        91 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L  170 (637)
                      +.++++++.++.++    ..+  .++|++|++++|.+++..+..+..+ ++|++|++++|.++ .++..+|.++++|++|
T Consensus        14 ~~~~c~~~~l~~ip----~~~--~~~l~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L   85 (285)
T 1ozn_A           14 VTTSCPQQGLQAVP----VGI--PAASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLA-RIDAAAFTGLALLEQL   85 (285)
T ss_dssp             CEEECCSSCCSSCC----TTC--CTTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCC-EECTTTTTTCTTCCEE
T ss_pred             eEEEcCcCCcccCC----cCC--CCCceEEEeeCCcCCccCHHHcccC-CCCCEEECCCCccc-eeCHhhcCCccCCCEE
Confidence            56777777777663    222  3678888888888776655555555 77888888888777 5544467778888888


Q ss_pred             EcCCCc-ccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCC-cccCCCccEEEc
Q 042944          171 NLSLNQ-ISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHL  247 (637)
Q Consensus       171 ~L~~n~-l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l  247 (637)
                      ++++|. +..+ +..+.++++|++|++++|.+.+..+..+..++     +|++|++++|.+...++. +..+++|++|++
T Consensus        86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  160 (285)
T 1ozn_A           86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-----ALQYLYLQDNALQALPDDTFRDLGNLTHLFL  160 (285)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-----CCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence            888876 7665 56677778888888888877766666677666     777777777777655443 556667777777


Q ss_pred             cCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCC
Q 042944          248 FDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG  325 (637)
Q Consensus       248 ~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  325 (637)
                      ++|.+++..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus       161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            77776655555566666777777777666654333 3336666666666666665555556666666666666666553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=3.3e-24  Score=225.15  Aligned_cols=132  Identities=19%  Similarity=0.165  Sum_probs=80.0

Q ss_pred             CCccEEeCCCC-CCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh
Q 042944          479 EYFSYLDVSDN-LLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD  557 (637)
Q Consensus       479 ~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~  557 (637)
                      ++|++|++++| .+....+..|..+++|+.|++++|.++         .+| .+..+++|++|++++|.+++..|..+. 
T Consensus       171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---------~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~-  239 (452)
T 3zyi_A          171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---------DMP-NLTPLVGLEELEMSGNHFPEIRPGSFH-  239 (452)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS---------SCC-CCTTCTTCCEEECTTSCCSEECGGGGT-
T ss_pred             CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc---------ccc-cccccccccEEECcCCcCcccCccccc-
Confidence            55555555552 333233345666666666666666666         333 245566666777777766633344333 


Q ss_pred             cCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeE
Q 042944          558 TLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTIT  621 (637)
Q Consensus       558 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~  621 (637)
                      .+++|+.|+|++|++++..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|++.
T Consensus       240 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            5666777777777666555666666667777777777666555556666666777777766654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.4e-25  Score=223.70  Aligned_cols=238  Identities=17%  Similarity=0.115  Sum_probs=199.0

Q ss_pred             eeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCC
Q 042944          362 LESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLS  441 (637)
Q Consensus       362 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~  441 (637)
                      ++..+++++.+.......+..+++|++|++++|.+.+..+..+... ++|++|++++|.+++..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            3444555555544444556778899999999999998777777665 899999999999986654  8899999999999


Q ss_pred             CCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccc
Q 042944          442 SNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLT  521 (637)
Q Consensus       442 ~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  521 (637)
                      +|.+.+..+  .++|++|++++|++++..+..    .++|+.|++++|.+++..+..+..+++|+.|++++|.+++.   
T Consensus        89 ~n~l~~l~~--~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---  159 (317)
T 3o53_A           89 NNYVQELLV--GPSIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV---  159 (317)
T ss_dssp             SSEEEEEEE--CTTCCEEECCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE---
T ss_pred             CCccccccC--CCCcCEEECCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc---
Confidence            999987553  379999999999998765443    38899999999999987788899999999999999999843   


Q ss_pred             cccccCCccc-cCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccc
Q 042944          522 FFVGEIPPSL-KKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAI  600 (637)
Q Consensus       522 ~~~~~~~~~l-~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~  600 (637)
                           .+..+ ..+++|++|++++|.++ .++...  .+++|++|+|++|+++ .+|..+..+++|+.|++++|+++ .+
T Consensus       160 -----~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~--~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l  229 (317)
T 3o53_A          160 -----NFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI  229 (317)
T ss_dssp             -----EGGGGGGGTTTCCEEECTTSCCC-EEECCC--CCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EE
T ss_pred             -----cHHHHhhccCcCCEEECCCCcCc-cccccc--ccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-ch
Confidence                 22333 46899999999999998 555444  3899999999999999 56667999999999999999999 67


Q ss_pred             cccccccccceeeccCCCeeE
Q 042944          601 PKCINNLTAMVEKASSNSTIT  621 (637)
Q Consensus       601 p~~l~~l~~L~~l~l~~n~l~  621 (637)
                      |..+..+++|++|++++|++.
T Consensus       230 ~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          230 EKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CTTCCCCTTCCEEECTTCCCB
T ss_pred             hhHhhcCCCCCEEEccCCCcc
Confidence            889999999999999999996

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=4.6e-24  Score=223.24  Aligned_cols=229  Identities=26%  Similarity=0.321  Sum_probs=117.2

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCC
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTAL  167 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L  167 (637)
                      ++++.|+|++|.+..+.+   ..+.++++|++|+|++|.+....+..+..+ ++|++|++++|.++ .++...|..+++|
T Consensus        64 ~~l~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l-~~L~~L~L~~n~l~-~~~~~~~~~l~~L  138 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKV---NSFKHLRHLEILQLSRNHIRTIEIGAFNGL-ANLNTLELFDNRLT-TIPNGAFVYLSKL  138 (440)
T ss_dssp             TTCSEEECCSCCCCEECT---TTTSSCSSCCEEECCSSCCCEECGGGGTTC-SSCCEEECCSSCCS-SCCTTTSCSCSSC
T ss_pred             CCCcEEEccCCcCCeeCH---HHhhCCCCCCEEECCCCcCCccChhhccCC-ccCCEEECCCCcCC-eeCHhHhhccccC
Confidence            345555555555555442   334444555555555555554444444443 55555555555555 4444445555555


Q ss_pred             CEEEcCCCcccchhh-hcCCCCCCcEEEcCCC-cCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEE
Q 042944          168 QHLNLSLNQISAISK-SFGNMCGLKTLHLFDN-NLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQEL  245 (637)
Q Consensus       168 ~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n-~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  245 (637)
                      ++|++++|+++.++. .|.++++|++|++++| .+....+..|..++     +|++|++++|.+.. ++.+..+++|++|
T Consensus       139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-----~L~~L~L~~n~l~~-~~~~~~l~~L~~L  212 (440)
T 3zyj_A          139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-----NLRYLNLAMCNLRE-IPNLTPLIKLDEL  212 (440)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-----SCCEEECTTSCCSS-CCCCTTCSSCCEE
T ss_pred             ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-----ccCeecCCCCcCcc-ccccCCCcccCEE
Confidence            555555555555432 4555555555555553 22222223444444     55555555554442 2234444444444


Q ss_pred             EccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCC
Q 042944          246 HLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG  325 (637)
Q Consensus       246 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  325 (637)
                      ++++|.+++..+..|..                       +++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus       213 ~Ls~N~l~~~~~~~~~~-----------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          213 DLSGNHLSAIRPGSFQG-----------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             ECTTSCCCEECTTTTTT-----------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred             ECCCCccCccChhhhcc-----------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence            44444444433444444                       5555555555555555555555666666666666666654


Q ss_pred             ccchhhhcCCCCCcEEEccCCccccc
Q 042944          326 MITESHVSNLSKLKYMDFSFNSLALN  351 (637)
Q Consensus       326 ~~~~~~~~~l~~L~~L~l~~n~~~~~  351 (637)
                       .+...+..+++|+.|++++|++.++
T Consensus       270 -~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          270 -LPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             -CCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             -cChhHhccccCCCEEEcCCCCccCC
Confidence             2333556666666666666666543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=3.6e-24  Score=210.43  Aligned_cols=265  Identities=22%  Similarity=0.212  Sum_probs=159.0

Q ss_pred             cEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccE
Q 042944          143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEI  221 (637)
Q Consensus       143 ~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~  221 (637)
                      ++++.+++.++ .+|.   ...++|++|++++|.++.++ ..|..+++|++|++++|.+.+..+..+..++     +|++
T Consensus        14 ~~~~c~~~~l~-~ip~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~   84 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-----LLEQ   84 (285)
T ss_dssp             CEEECCSSCCS-SCCT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----TCCE
T ss_pred             eEEEcCcCCcc-cCCc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc-----CCCE
Confidence            67888888887 7776   23467888888888888865 4678888888888888888766677777766     7777


Q ss_pred             EEcCCCC-CCCC-cCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 042944          222 LKLGGNK-LTGS-LPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRL  299 (637)
Q Consensus       222 L~l~~n~-~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~  299 (637)
                      |++++|. +... +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+....                   
T Consensus        85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------  145 (285)
T 1ozn_A           85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP-------------------  145 (285)
T ss_dssp             EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------------------
T ss_pred             EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC-------------------
Confidence            7777775 5543 223555566666666666665555555555555555555555554333                   


Q ss_pred             CCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCcccc
Q 042944          300 NGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKW  379 (637)
Q Consensus       300 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  379 (637)
                          +..+..+++|+.|++++|.+.+ .+...+.++++|++|++++|.+....+..+..+++|+.|++++|.+....+..
T Consensus       146 ----~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  220 (285)
T 1ozn_A          146 ----DDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA  220 (285)
T ss_dssp             ----TTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred             ----HhHhccCCCccEEECCCCcccc-cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH
Confidence                3334444455555555554443 22223445555555555555555444445555555555555566555555566


Q ss_pred             ccCCCCccEEEeeCCCCCCccch-hhhhcCCCccEEECCCCcCCCcccccccC--CCCCCeEeCCCC
Q 042944          380 LQSQKNYYFLDISDTEISDAVPS-WFWDLSPNLYYLNLSHNHLEGTVLDLSLN--YAGYPGIDLSSN  443 (637)
Q Consensus       380 l~~~~~L~~L~l~~n~i~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~--~~~L~~L~l~~n  443 (637)
                      +..+++|++|++++|.+....+. ++.   ..++.+..+.+.+....|..+..  +..++..++.+|
T Consensus       221 ~~~l~~L~~L~l~~N~~~c~~~~~~~~---~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          221 LAPLRALQYLRLNDNPWVCDCRARPLW---AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC  284 (285)
T ss_dssp             HTTCTTCCEEECCSSCEECSGGGHHHH---HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred             cccCcccCEEeccCCCccCCCCcHHHH---HHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence            77888888888888887654332 222   23444455566665555544432  334444444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=4.6e-24  Score=224.02  Aligned_cols=248  Identities=20%  Similarity=0.211  Sum_probs=163.1

Q ss_pred             CcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCE
Q 042944           90 LRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQH  169 (637)
Q Consensus        90 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~  169 (637)
                      .+.++.++..++.++    ..+.  +++++|+|++|.++...+..+..+ ++|++|++++|.+. .++..+|.++++|++
T Consensus        56 ~~~v~c~~~~l~~iP----~~~~--~~l~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~  127 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVP----QGIP--SNTRYLNLMENNIQMIQADTFRHL-HHLEVLQLGRNSIR-QIEVGAFNGLASLNT  127 (452)
T ss_dssp             SCEEECCSSCCSSCC----SCCC--TTCSEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCC-EECTTTTTTCTTCCE
T ss_pred             CcEEEECCCCcCccC----CCCC--CCccEEECcCCcCceECHHHcCCC-CCCCEEECCCCccC-CcChhhccCcccCCE
Confidence            456666666666553    2222  567777777777766555555555 77777777777776 555446677777777


Q ss_pred             EEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCC-CCCCcC-CcccCCCccEEE
Q 042944          170 LNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK-LTGSLP-DITEFSSLQELH  246 (637)
Q Consensus       170 L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~-~~~~~~-~~~~~~~L~~L~  246 (637)
                      |++++|+++.++. .|.++++|++|++++|.+....+..|..++     +|+.|++++|. +....+ .+..+++|++|+
T Consensus       128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  202 (452)
T 3zyi_A          128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-----SLMRLDLGELKKLEYISEGAFEGLFNLKYLN  202 (452)
T ss_dssp             EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT-----TCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred             EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC-----cccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence            7777777776543 466677777777777776655555666666     77777777643 332222 355666777777


Q ss_pred             ccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCC
Q 042944          247 LFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG  325 (637)
Q Consensus       247 l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  325 (637)
                      +++|.+++.  ..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++
T Consensus       203 L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  280 (452)
T 3zyi_A          203 LGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS  280 (452)
T ss_dssp             CTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence            777777643  2466677777777777777665443 3447777777777777776666777777788888888887775


Q ss_pred             ccchhhhcCCCCCcEEEccCCccccccc
Q 042944          326 MITESHVSNLSKLKYMDFSFNSLALNFS  353 (637)
Q Consensus       326 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~  353 (637)
                       .+...+..+++|+.|++++|++.++..
T Consensus       281 -~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          281 -LPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             -CCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             -cChHHhccccCCCEEEccCCCcCCCCC
Confidence             344466777788888888887765544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=2.4e-24  Score=215.43  Aligned_cols=85  Identities=26%  Similarity=0.385  Sum_probs=72.4

Q ss_pred             CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcc
Q 042944          140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSL  219 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L  219 (637)
                      +++++|++++|.+. .+|. .+.++++|++|++++|.++.+|..+.++++|++|++++|.+. ..|..+..++     +|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~-~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~-----~L  152 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPD-QAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLN-----RL  152 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCS-CGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCT-----TC
T ss_pred             cceeEEEccCCCch-hcCh-hhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCc-----CC
Confidence            78999999999998 8887 577799999999999999988888899999999999999888 6677788877     88


Q ss_pred             cEEEcCCCCCCCC
Q 042944          220 EILKLGGNKLTGS  232 (637)
Q Consensus       220 ~~L~l~~n~~~~~  232 (637)
                      ++|++++|.....
T Consensus       153 ~~L~L~~n~~~~~  165 (328)
T 4fcg_A          153 RELSIRACPELTE  165 (328)
T ss_dssp             CEEEEEEETTCCC
T ss_pred             CEEECCCCCCccc
Confidence            8888888665443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=6.9e-25  Score=231.43  Aligned_cols=236  Identities=17%  Similarity=0.147  Sum_probs=184.0

Q ss_pred             CCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeE
Q 042944          359 PFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGI  438 (637)
Q Consensus       359 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L  438 (637)
                      +++|+.|++++|.+....|..+..+++|++|++++|.+.+..+  +. .+++|++|++++|.+++..+     .++|+.|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT-TCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc-cCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            3355555555555555556667777777777777777765444  32 34777788887777764332     2678888


Q ss_pred             eCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhh-ccCCCcEEeccCccCCC
Q 042944          439 DLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLL-RWQALAVLNLANNNFSG  517 (637)
Q Consensus       439 ~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~  517 (637)
                      ++++|.+.+..+..+++|++|++++|++++..+..+.. .++|+.|++++|.+++..|..+. .+++|+.|++++|.+++
T Consensus       105 ~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             ECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             ECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            88888887777777788999999999988766544332 38999999999999988888776 78999999999999883


Q ss_pred             CccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944          518 NFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS  597 (637)
Q Consensus       518 ~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~  597 (637)
                               +|. ...+++|++|++++|.++ .+|..+. .+++|+.|+|++|.++ .+|..+..+++|+.|++++|++.
T Consensus       184 ---------~~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~-~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          184 ---------VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             ---------EEC-CCCCTTCCEEECCSSCCC-EECGGGG-GGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             ---------ccc-cccCCCCCEEECCCCCCC-CCCHhHc-CCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence                     322 335899999999999998 5666666 6999999999999999 57888999999999999999998


Q ss_pred             -ccccccccccccceeeccC
Q 042944          598 -GAIPKCINNLTAMVEKASS  616 (637)
Q Consensus       598 -~~~p~~l~~l~~L~~l~l~  616 (637)
                       +.+|..+..++.|+.++++
T Consensus       251 c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          251 CGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH
T ss_pred             CcchHHHHHhCCCCcEEecc
Confidence             6778889999999988885

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=3e-24  Score=226.58  Aligned_cols=218  Identities=18%  Similarity=0.121  Sum_probs=189.1

Q ss_pred             CCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEc
Q 042944          382 SQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNL  461 (637)
Q Consensus       382 ~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L  461 (637)
                      .+++|+.|++++|.+.+..+..+... ++|++|++++|.+++..+  +..+++|+.|++++|.+++..+.  ++|++|++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~--~~L~~L~L  106 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG--PSIETLHA  106 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC--TTCCEEEC
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC--CCcCEEEC
Confidence            44589999999999999877777665 899999999999987665  88999999999999999876543  89999999


Q ss_pred             ccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcccc-CCCCCcEE
Q 042944          462 SNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLK-KCNELKII  540 (637)
Q Consensus       462 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~-~l~~L~~L  540 (637)
                      ++|.+++..+..    .++|+.|++++|.+++..|..+..+++|+.|++++|.+++.        .|..+. .+++|++|
T Consensus       107 ~~N~l~~~~~~~----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~l~~~l~~L~~L  174 (487)
T 3oja_A          107 ANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV--------NFAELAASSDTLEHL  174 (487)
T ss_dssp             CSSCCCCEEECC----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE--------EGGGGGGGTTTCCEE
T ss_pred             cCCcCCCCCccc----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc--------ChHHHhhhCCcccEE
Confidence            999998765542    38999999999999988888999999999999999999843        344444 78999999


Q ss_pred             EcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCee
Q 042944          541 DAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTI  620 (637)
Q Consensus       541 ~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l  620 (637)
                      ++++|.++ .++...  .+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++
T Consensus       175 ~Ls~N~l~-~~~~~~--~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          175 NLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             ECTTSCCC-EEECCC--CCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred             ecCCCccc-cccccc--cCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCC
Confidence            99999998 445433  48999999999999995 5666999999999999999999 5788999999999999999998


Q ss_pred             E
Q 042944          621 T  621 (637)
Q Consensus       621 ~  621 (637)
                      .
T Consensus       250 ~  250 (487)
T 3oja_A          250 H  250 (487)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=1.9e-25  Score=222.33  Aligned_cols=201  Identities=20%  Similarity=0.195  Sum_probs=140.0

Q ss_pred             CCccEEECCCCcCCCcccccc--cCCCCCCeEeCCCCcCcCCCCCC--------CCCccEEEcccccccCcccccccccC
Q 042944          409 PNLYYLNLSHNHLEGTVLDLS--LNYAGYPGIDLSSNDFEGPVPPV--------PGNVTSLNLSNNKFSGPISSLCSISG  478 (637)
Q Consensus       409 ~~L~~L~l~~n~i~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~--------~~~L~~L~L~~n~l~~~~~~~~~~~~  478 (637)
                      ++|++|++++|.+++..+..+  ..+++|++|++++|.+.+. |..        +++|++|++++|++.+..+.... ..
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l  172 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR-VF  172 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC-CC
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc-cC
Confidence            566666666666665555443  5566666666666666554 221        26777777777777665543332 22


Q ss_pred             CCccEEeCCCCCCccc--Cchhh--hccCCCcEEeccCccCCCCccccccccCC-ccccCCCCCcEEEcCCCcccccCCh
Q 042944          479 EYFSYLDVSDNLLSGE--LPDCL--LRWQALAVLNLANNNFSGNFLTFFVGEIP-PSLKKCNELKIIDAGDNKFSGTIPA  553 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~  553 (637)
                      ++|++|++++|++.+.  .+..+  ..+++|++|++++|.+++..      .++ ..+..+++|++|++++|.+++..|.
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  246 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS------GVCSALAAARVQLQGLDLSHNSLRDAAGA  246 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH------HHHHHHHHTTCCCSEEECTTSCCCSSCCC
T ss_pred             CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH------HHHHHHHhcCCCCCEEECCCCcCCcccch
Confidence            7888888888887654  23333  77888999999999887211      112 2235678899999999988865544


Q ss_pred             hhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944          554 WIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH  622 (637)
Q Consensus       554 ~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~  622 (637)
                      ..+..+++|++|+|++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|+++.
T Consensus       247 ~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          247 PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            44435788999999999988 7777766  8899999999999855 66 8889999999999998764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=1.6e-24  Score=215.59  Aligned_cols=252  Identities=19%  Similarity=0.183  Sum_probs=150.0

Q ss_pred             cCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCC-CCCCchhcc-------CCCCCCEEEcCCCcccc-hh
Q 042944          111 MNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLA-GPIPDYAFS-------NMTALQHLNLSLNQISA-IS  181 (637)
Q Consensus       111 l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~-~~l~~~~~~-------~l~~L~~L~L~~n~l~~-l~  181 (637)
                      +...++|++|++++|.+  ..|..+...   |++|++++|.+. ..++. .+.       ++++|++|++++|+++. +|
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  112 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPS-RILFGALRVLGISGLQELTLENLEVTGTAP  112 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBH-HHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCH-HHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence            34447888899999988  456556654   888899988874 23444 233       68889999999888885 66


Q ss_pred             hhc--CCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCc
Q 042944          182 KSF--GNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEK  259 (637)
Q Consensus       182 ~~~--~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~  259 (637)
                      ..+  ..+++|++|++++|.+.+. |..+..+...                       ..++|++|++++|.+++..+..
T Consensus       113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~-----------------------~~~~L~~L~L~~N~l~~~~~~~  168 (312)
T 1wwl_A          113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW-----------------------LKPGLKVLSIAQAHSLNFSCEQ  168 (312)
T ss_dssp             CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT-----------------------CCTTCCEEEEESCSCCCCCTTT
T ss_pred             HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh-----------------------hcCCCcEEEeeCCCCccchHHH
Confidence            655  7888888888888888866 7777766311                       1234555555555555444455


Q ss_pred             CCCCCCCcEEEcCCCCCCCC---CCCC--CCCCCCCEEEccCCcCCC---CChhhhcCCCCCCEEecCCCcCCCccchhh
Q 042944          260 FRKPSPLVILNLDGNQLWGS---LPDL--SVFPFLTRLDVSDSRLNG---TVSEGLGRLSKLEFLDLFGNSLEGMITESH  331 (637)
Q Consensus       260 l~~l~~L~~L~l~~~~~~~~---~~~~--~~~~~L~~L~l~~n~~~~---~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~  331 (637)
                      +..+++|++|++++|++.+.   +..+  ..+++|++|++++|.+++   .....+..+++|+.|++++|.+.+..+...
T Consensus       169 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  248 (312)
T 1wwl_A          169 VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS  248 (312)
T ss_dssp             CCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred             hccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence            55666666666666654321   1111  345666666666666652   112233456677777777777766443334


Q ss_pred             hcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCC
Q 042944          332 VSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEIS  397 (637)
Q Consensus       332 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~  397 (637)
                      +..+++|++|++++|.++. .+..+.  ++|++|++++|.+++. |. +..+++|++|++++|.++
T Consensus       249 ~~~l~~L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CCCCTTCCEEECTTSCCSS-CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             hhhcCCCCEEECCCCccCh-hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence            5556677777777776652 222221  4444444444444433 22 444444444444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=3.7e-22  Score=195.05  Aligned_cols=204  Identities=23%  Similarity=0.246  Sum_probs=131.5

Q ss_pred             CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchh-hhcCCCCCCcEE
Q 042944          115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTL  193 (637)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L  193 (637)
                      ++|++|++++|.+++..+..+..+ ++|++|++++|.+. .++..+|.++++|++|++++|+++.++ ..|.++++|++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTC-TTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCcccccCHhHhccc-cCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            457777777777765555445555 67777777777766 555546667777777777777776653 456677777777


Q ss_pred             EcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCC--CcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCc----
Q 042944          194 HLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG--SLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLV----  267 (637)
Q Consensus       194 ~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~----  267 (637)
                      ++++|.+.+..+..+..++     +|++|++++|.+..  .+..+..+++|++|++++|.+++..+..+..+++|+    
T Consensus       106 ~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l  180 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLK-----TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  180 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCT-----TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCE
T ss_pred             ECCCCCccccCchhcccCC-----CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccce
Confidence            7777776655554566665     67777777776664  233466666777777777766655555555544444    


Q ss_pred             EEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCC
Q 042944          268 ILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG  325 (637)
Q Consensus       268 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  325 (637)
                      .+++++|.+....+......+|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus       181 ~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             EEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             eeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            6677777766555555555567777777777665555556666777777777776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=5.8e-22  Score=193.64  Aligned_cols=203  Identities=17%  Similarity=0.148  Sum_probs=108.0

Q ss_pred             CccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEc
Q 042944          385 NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNL  461 (637)
Q Consensus       385 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L  461 (637)
                      +|++|++++|.+.+..+..+... ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..   +++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccc-cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            45555555555544433333332 45555555555555444444455555555555555544433221   334444455


Q ss_pred             ccccccCcccccccccCCCccEEeCCCCCCccc-CchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCc--
Q 042944          462 SNNKFSGPISSLCSISGEYFSYLDVSDNLLSGE-LPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELK--  538 (637)
Q Consensus       462 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~--  538 (637)
                      ++|++.+..+.. ....++|++|++++|.+++. +|..+..+++|+.|++++|++++.        .+..+..+++|+  
T Consensus       108 ~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l~~L~~l  178 (276)
T 2z62_A          108 VETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI--------YCTDLRVLHQMPLL  178 (276)
T ss_dssp             TTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE--------CGGGGHHHHTCTTC
T ss_pred             CCCCccccCchh-cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC--------CHHHhhhhhhcccc
Confidence            444444332211 11226666666666666643 466667777777777777766622        112333334444  


Q ss_pred             --EEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944          539 --IIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA  599 (637)
Q Consensus       539 --~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~  599 (637)
                        +|++++|.++ .++...+ ...+|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus       179 ~l~L~ls~n~l~-~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          179 NLSLDLSLNPMN-FIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             CEEEECCSSCCC-EECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             ceeeecCCCccc-ccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence              6677777766 4444444 245677777777776644444456667777777777766644

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=5.3e-22  Score=193.17  Aligned_cols=231  Identities=24%  Similarity=0.325  Sum_probs=167.3

Q ss_pred             ccCchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchh
Q 042944           52 SPINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSA  131 (637)
Q Consensus        52 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~  131 (637)
                      .+...+.....+.+..+.......        ...+++|++|+++++.+...     ..+..+++|++|++++|.+.+. 
T Consensus        13 ~~~~~~~~l~~l~l~~~~~~~~~~--------~~~l~~L~~L~l~~~~i~~~-----~~l~~l~~L~~L~l~~n~l~~~-   78 (272)
T 3rfs_A           13 FPDDAFAETIKANLKKKSVTDAVT--------QNELNSIDQIIANNSDIKSV-----QGIQYLPNVRYLALGGNKLHDI-   78 (272)
T ss_dssp             SCSHHHHHHHHHHHTCSCTTSEEC--------HHHHTTCCEEECTTSCCCCC-----TTGGGCTTCCEEECTTSCCCCC-
T ss_pred             cCCchHHHHHHHHhcCcccccccc--------cccccceeeeeeCCCCcccc-----cccccCCCCcEEECCCCCCCCc-
Confidence            345566666667777766555443        56788899999999888765     4567778999999999988764 


Q ss_pred             hhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCCCchhHhhh
Q 042944          132 YHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLN  210 (637)
Q Consensus       132 ~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~~~~~~l~~  210 (637)
                       ..+..+ ++|++|++++|.++ .++...+.++++|++|++++|+++.++. .|.++++|++|++++|.+.+..+..+..
T Consensus        79 -~~l~~l-~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  155 (272)
T 3rfs_A           79 -SALKEL-TNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK  155 (272)
T ss_dssp             -GGGTTC-TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             -hhhcCC-CCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc
Confidence             245555 88999999999888 6666577888889999999888888654 4788888888888888888666666777


Q ss_pred             cccCCCCcccEEEcCCCCCCCCcCC-cccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCC
Q 042944          211 LSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFL  289 (637)
Q Consensus       211 l~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L  289 (637)
                      ++     +|+.|++++|.+...++. +..+++|++|++++|.+++..+..+..+++|+.|++++|.+..      .++++
T Consensus       156 l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l  224 (272)
T 3rfs_A          156 LT-----NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGI  224 (272)
T ss_dssp             CT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTT
T ss_pred             Cc-----cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHH
Confidence            77     888888888877765544 4567777777777777776666666777777777777776542      24456


Q ss_pred             CEEEccCCcCCCCChhhhcCC
Q 042944          290 TRLDVSDSRLNGTVSEGLGRL  310 (637)
Q Consensus       290 ~~L~l~~n~~~~~~~~~l~~l  310 (637)
                      +.+++..|.+.+.+|..++.+
T Consensus       225 ~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          225 RYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             HHHHHHHHHTGGGBBCTTSCB
T ss_pred             HHHHHHHHhCCCcccCccccc
Confidence            666666666665555554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=2.7e-21  Score=189.57  Aligned_cols=201  Identities=22%  Similarity=0.200  Sum_probs=147.3

Q ss_pred             hcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944           84 ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN  163 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~  163 (637)
                      ++.++++++++++++.++.+.    ..+.  +++++|++++|.++...+..+..+ ++|++|++++|.++ .++.  ...
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip----~~~~--~~l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~-~~~~--~~~   75 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALP----PDLP--KDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELT-KLQV--DGT   75 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCC----SCCC--TTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCC-EEEC--CSC
T ss_pred             ccccCCccEEECCCCCCCcCC----CCCC--CCCCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccC-cccC--CCC
Confidence            567888999999999888774    2332  688999999999887777767776 89999999999887 6766  378


Q ss_pred             CCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCC-cccCCCc
Q 042944          164 MTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSL  242 (637)
Q Consensus       164 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L  242 (637)
                      +++|++|++++|+++.+|..+.++++|++|++++|++++..+..|..++     +|++|++++|.+...++. +..+++|
T Consensus        76 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-----ELQELYLKGNELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----TCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCC-----CCCEEECCCCCCCccChhhcccccCC
Confidence            8899999999999988888888888888888888888866667777777     777777777777755443 3456667


Q ss_pred             cEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 042944          243 QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRL  299 (637)
Q Consensus       243 ~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~  299 (637)
                      ++|++++|.++...+..|..+++|+.|++++|++......+...++|+.+++++|++
T Consensus       151 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence            777777766665555555666666666666666654444444445555555555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=3.4e-21  Score=187.33  Aligned_cols=199  Identities=20%  Similarity=0.218  Sum_probs=128.9

Q ss_pred             CccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEc
Q 042944          385 NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNL  461 (637)
Q Consensus       385 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L  461 (637)
                      ..+.++++++.++.. |..+   ++++++|++++|.+++..+..+..+++|++|++++|.+.+..+..   +++|++|++
T Consensus        17 ~~~~l~~~~~~l~~i-p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAI-PSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSC-CSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCcc-CCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            456677777776653 3222   357777888888777766666777777777777777776554432   456666666


Q ss_pred             ccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccCCCCCcEE
Q 042944          462 SNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKKCNELKII  540 (637)
Q Consensus       462 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~l~~L~~L  540 (637)
                      ++|++.+..+..+ ...++|++|++++|.++...+..|..+++|+.|++++|.++         .+|. .+..+++|++|
T Consensus        93 ~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           93 TDNKLQALPIGVF-DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ---------SLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             CSSCCCCCCTTTT-TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTCTTCCEE
T ss_pred             CCCcCCcCCHhHc-ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC---------ccCHhHccCCccccee
Confidence            6666654433222 22267777777777777666666777777777777777766         3333 35667777777


Q ss_pred             EcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccc
Q 042944          541 DAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG  598 (637)
Q Consensus       541 ~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~  598 (637)
                      ++++|.++ .++...+..+++|+.|++++|++++..+..+..+++|+.|++++|++..
T Consensus       163 ~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          163 RLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             ECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EecCCcCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            77777776 4554444457777777777777774444456667777777777777654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=1.9e-21  Score=189.29  Aligned_cols=199  Identities=21%  Similarity=0.246  Sum_probs=101.0

Q ss_pred             CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcc
Q 042944          140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSL  219 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L  219 (637)
                      ++|++|++++|.+. .++.  +..+++|++|++++|.++.++ .+..+++|++|++++|.+.+..+..+..++     +|
T Consensus        41 ~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L  111 (272)
T 3rfs_A           41 NSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLT-----NL  111 (272)
T ss_dssp             TTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCT-----TC
T ss_pred             cceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCc-----CC
Confidence            44555555555444 3332  444555555555555544442 344455555555555555444444444444     45


Q ss_pred             cEEEcCCCCCCCCcCC-cccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCC-CCCCCCCEEEccCC
Q 042944          220 EILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDL-SVFPFLTRLDVSDS  297 (637)
Q Consensus       220 ~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~n  297 (637)
                      ++|++++|.+...++. +..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+.. ..+++|++|++++|
T Consensus       112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence            5555555544433332 344455555555555555444444555555556655555555444432 23555666666666


Q ss_pred             cCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCC
Q 042944          298 RLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFG  355 (637)
Q Consensus       298 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  355 (637)
                      .+.+..+..+..+++|+.|++++|.+.+        .+++++.++++.|.+.+..+..
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCc
Confidence            6555555555566666666666665442        2345555555555555444433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=4.4e-21  Score=190.04  Aligned_cols=193  Identities=21%  Similarity=0.335  Sum_probs=130.4

Q ss_pred             hcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944           84 ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN  163 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~  163 (637)
                      +..+++|++|+++++.+..+     +.+..+++|++|++++|.+.+..+  +..+ ++|++|++++|.+. .++.  +..
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-----~~~~~l~~L~~L~L~~n~i~~~~~--~~~l-~~L~~L~L~~n~l~-~~~~--~~~  105 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTI-----EGVQYLNNLIGLELKDNQITDLAP--LKNL-TKITELELSGNPLK-NVSA--IAG  105 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG--GTTC-CSCCEEECCSCCCS-CCGG--GTT
T ss_pred             HHHcCCcCEEEeeCCCccCc-----hhhhccCCCCEEEccCCcCCCChh--HccC-CCCCEEEccCCcCC-Cchh--hcC
Confidence            45678888899988888775     346667888888888888886554  5555 88888888888887 6654  788


Q ss_pred             CCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCcc
Q 042944          164 MTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQ  243 (637)
Q Consensus       164 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~  243 (637)
                      +++|++|++++|+++.++. +..+++|++|++++|.+.+..+  +..++     +|+.|++++|.+....+ +..+++|+
T Consensus       106 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~-----~L~~L~l~~n~l~~~~~-l~~l~~L~  176 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLT-----NLQYLSIGNAQVSDLTP-LANLSKLT  176 (308)
T ss_dssp             CTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCT-----TCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             CCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCC-----CccEEEccCCcCCCChh-hcCCCCCC
Confidence            8888888888888888754 7888888888888888774433  66666     77777777777764333 55666666


Q ss_pred             EEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 042944          244 ELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRL  299 (637)
Q Consensus       244 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~  299 (637)
                      +|++++|.+++..+  +..+++|++|++++|++.+.. .+..+++|++|++++|.+
T Consensus       177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred             EEECCCCccCcChh--hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence            66666666654322  444555555555555544332 233344444444444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=5.2e-21  Score=187.53  Aligned_cols=202  Identities=19%  Similarity=0.189  Sum_probs=146.2

Q ss_pred             ccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCC-CCCCCccE
Q 042944          380 LQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVP-PVPGNVTS  458 (637)
Q Consensus       380 l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~  458 (637)
                      +..+++++.++++++.+.... ..+   ++++++|++++|.+++..+..+..+++|+.|++++|.+++..+ ..+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip-~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALP-PDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCC-SCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCE
T ss_pred             ccccCCccEEECCCCCCCcCC-CCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCE
Confidence            445666777777777766532 222   3577777777777776666677777777777777777765433 23667778


Q ss_pred             EEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccCCCCC
Q 042944          459 LNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKKCNEL  537 (637)
Q Consensus       459 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~l~~L  537 (637)
                      |++++|++.......  ...++|++|++++|++++..+..|..+++|+.|++++|+++         .+|. .+..+++|
T Consensus        82 L~Ls~N~l~~l~~~~--~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~---------~~~~~~~~~l~~L  150 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLG--QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK---------TLPPGLLTPTPKL  150 (290)
T ss_dssp             EECCSSCCSSCCCCT--TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC---------CCCTTTTTTCTTC
T ss_pred             EECCCCcCCcCchhh--ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC---------ccChhhcccccCC
Confidence            888887776443322  22378888888888888766677888888888888888887         3333 35678888


Q ss_pred             cEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccc
Q 042944          538 KIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG  598 (637)
Q Consensus       538 ~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~  598 (637)
                      +.|++++|+++ .+|...+..+++|+.|+|++|+++ .+|..+...++|+.+++++|++..
T Consensus       151 ~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          151 EKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            88888888887 777766657888888888888888 777778888888888888888763

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=2.1e-20  Score=181.71  Aligned_cols=201  Identities=27%  Similarity=0.355  Sum_probs=113.6

Q ss_pred             CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhh-hcCCCCCCcEE
Q 042944          115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTL  193 (637)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L  193 (637)
                      .+.++++++++.++. .|..+   .+++++|++++|.+. .++..+|.++++|++|++++|+++.++. .|.++++|++|
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~---~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNI---PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCC---CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             CCCCEEEccCCCCCc-cCCCC---CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            346677777777664 23222   255777777777776 5655567777777777777777776644 34667777777


Q ss_pred             EcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCC-cccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcC
Q 042944          194 HLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD  272 (637)
Q Consensus       194 ~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~  272 (637)
                      ++++|.+....+..|..++     +|++|++++|.+....+. +..+++|++|++++|.+++..+..|..          
T Consensus        91 ~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----------  155 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLV-----NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK----------  155 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCS-----SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred             ECCCCcCCcCCHhHccccc-----CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC----------
Confidence            7777766655555555555     566666665555543332 334444555555554444333333444          


Q ss_pred             CCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCccc
Q 042944          273 GNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA  349 (637)
Q Consensus       273 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  349 (637)
                                   +++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+...+..+++|+.|++++|++.
T Consensus       156 -------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          156 -------------LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             -------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             -------------CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCee
Confidence                         4555555555555554444445555555555555555554 22334555556666666666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=6.6e-23  Score=208.46  Aligned_cols=260  Identities=19%  Similarity=0.148  Sum_probs=150.2

Q ss_pred             EEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCC-CccEEEeeC
Q 042944          315 FLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQK-NYYFLDISD  393 (637)
Q Consensus       315 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~  393 (637)
                      ...++.|.+.+.++. .+...++|++|++++|.++......                    +...+..++ +|++|++++
T Consensus         2 ~~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~--------------------l~~~l~~~~~~L~~L~Ls~   60 (362)
T 3goz_A            2 NYKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVE--------------------LIQAFANTPASVTSLNLSG   60 (362)
T ss_dssp             EEECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHH--------------------HHHHHHTCCTTCCEEECCS
T ss_pred             ccccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHH--------------------HHHHHHhCCCceeEEECcC
Confidence            356778888765444 5555666888888888877544310                    013334444 455555555


Q ss_pred             CCCCCccchhhhhc----CCCccEEECCCCcCCCccccc----ccCC-CCCCeEeCCCCcCcCCCCCC--------CCCc
Q 042944          394 TEISDAVPSWFWDL----SPNLYYLNLSHNHLEGTVLDL----SLNY-AGYPGIDLSSNDFEGPVPPV--------PGNV  456 (637)
Q Consensus       394 n~i~~~~~~~~~~~----~~~L~~L~l~~n~i~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~--------~~~L  456 (637)
                      |.+.+..+..+...    +++|++|++++|.+++..+..    +..+ ++|+.|++++|.+++..+..        ..+|
T Consensus        61 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  140 (362)
T 3goz_A           61 NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI  140 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTC
T ss_pred             CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCce
Confidence            55554444333332    245555555555554433322    2222 45555555555554433211        2466


Q ss_pred             cEEEcccccccCcccccc----cccCCCccEEeCCCCCCcccCchhh----hcc-CCCcEEeccCccCCCCccccccccC
Q 042944          457 TSLNLSNNKFSGPISSLC----SISGEYFSYLDVSDNLLSGELPDCL----LRW-QALAVLNLANNNFSGNFLTFFVGEI  527 (637)
Q Consensus       457 ~~L~L~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~~~~~~  527 (637)
                      ++|++++|++++......    ....++|++|++++|.+++..+..+    ..+ ++|++|++++|.+.+....    .+
T Consensus       141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~----~l  216 (362)
T 3goz_A          141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA----EL  216 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH----HH
T ss_pred             eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH----HH
Confidence            677777776664332211    1111478888888888876665444    334 5888888888887743221    24


Q ss_pred             CccccC-CCCCcEEEcCCCcccccCCh---hhhhcCCCCcEEeccCcccccc-------CCccccCCCCCcEeeCCCCcc
Q 042944          528 PPSLKK-CNELKIIDAGDNKFSGTIPA---WIGDTLPKLAILSLRSNQFHGS-------IPRNLCRLSKIQLLDFSLNSI  596 (637)
Q Consensus       528 ~~~l~~-l~~L~~L~ls~n~l~~~~~~---~l~~~l~~L~~L~L~~n~~~~~-------~~~~l~~l~~L~~L~ls~n~l  596 (637)
                      +..+.. .++|++|++++|.+++..+.   .+++.+++|+.|+|++|.+.+.       ++..+..+++|+.||+++|++
T Consensus       217 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          217 AYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             HHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             HHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            444544 35788888888888743332   2234568888888888884322       334567788888888888888


Q ss_pred             ccc
Q 042944          597 SGA  599 (637)
Q Consensus       597 ~~~  599 (637)
                      .+.
T Consensus       297 ~~~  299 (362)
T 3goz_A          297 HPS  299 (362)
T ss_dssp             CGG
T ss_pred             CCc
Confidence            755

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=1.7e-22  Score=205.42  Aligned_cols=253  Identities=19%  Similarity=0.147  Sum_probs=194.4

Q ss_pred             EeccCCcCCCCccccccCCCCccEEEeeCCCCCCccc----hhhhhcCC-CccEEECCCCcCCCcccccccCC-----CC
Q 042944          365 IGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVP----SWFWDLSP-NLYYLNLSHNHLEGTVLDLSLNY-----AG  434 (637)
Q Consensus       365 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~----~~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~~-----~~  434 (637)
                      +.++.+.+.+..|..+...++|++|++++|.+.+..+    ..+... + +|++|++++|.+++..+..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANT-PASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTC-CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhC-CCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            5677777777777877778889999999999998777    444444 5 89999999999988766656553     99


Q ss_pred             CCeEeCCCCcCcCCCCCC-------C-CCccEEEcccccccCccccccccc----CCCccEEeCCCCCCcccCc----hh
Q 042944          435 YPGIDLSSNDFEGPVPPV-------P-GNVTSLNLSNNKFSGPISSLCSIS----GEYFSYLDVSDNLLSGELP----DC  498 (637)
Q Consensus       435 L~~L~l~~n~~~~~~~~~-------~-~~L~~L~L~~n~l~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~----~~  498 (637)
                      |+.|++++|.+++..+..       . ++|++|++++|++++.........    .++|++|++++|.+++..+    ..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999998655431       2 799999999999987665433211    2699999999999986544    44


Q ss_pred             hhccC-CCcEEeccCccCCCCccccccccCCccccCC-CCCcEEEcCCCccccc----CChhhhhcCCCCcEEeccCccc
Q 042944          499 LLRWQ-ALAVLNLANNNFSGNFLTFFVGEIPPSLKKC-NELKIIDAGDNKFSGT----IPAWIGDTLPKLAILSLRSNQF  572 (637)
Q Consensus       499 l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l-~~L~~L~ls~n~l~~~----~~~~l~~~l~~L~~L~L~~n~~  572 (637)
                      +..++ +|++|++++|++++..+.    .+...+..+ ++|++|++++|.+++.    ++..+....++|++|+|++|++
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCA----ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHH----HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             HhcCCccccEeeecCCCCchhhHH----HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            45565 999999999999854332    122244556 5999999999999842    4555553356999999999999


Q ss_pred             cccCC----ccccCCCCCcEeeCCCCcccc-------cccccccccccceeeccCCCeeEE
Q 042944          573 HGSIP----RNLCRLSKIQLLDFSLNSISG-------AIPKCINNLTAMVEKASSNSTITH  622 (637)
Q Consensus       573 ~~~~~----~~l~~l~~L~~L~ls~n~l~~-------~~p~~l~~l~~L~~l~l~~n~l~~  622 (637)
                      ++..+    ..+..+++|+.|++++|.+.+       .+++.+..+++|++|++++|++..
T Consensus       238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            85433    345678999999999998443       345578899999999999999853

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=7.7e-22  Score=196.06  Aligned_cols=221  Identities=17%  Similarity=0.185  Sum_probs=150.1

Q ss_pred             CccEEEeeCCCCCCccchhh---hhcCCCccEEECCCCcCCCcccccc--cCCCCCCeEeCCCCcCcCCCC-------CC
Q 042944          385 NYYFLDISDTEISDAVPSWF---WDLSPNLYYLNLSHNHLEGTVLDLS--LNYAGYPGIDLSSNDFEGPVP-------PV  452 (637)
Q Consensus       385 ~L~~L~l~~n~i~~~~~~~~---~~~~~~L~~L~l~~n~i~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~-------~~  452 (637)
                      .++.+.+.++.+.+.....+   .. .++|++|++++|.+++..+..+  ..+++|+.|++++|.+.+..+       ..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLA-YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHH-HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcc-cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            35556666555543222111   11 1457777777777766666555  667777777777777765333       12


Q ss_pred             CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCccc--C--chhhhccCCCcEEeccCccCCCCccccccccCC
Q 042944          453 PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGE--L--PDCLLRWQALAVLNLANNNFSGNFLTFFVGEIP  528 (637)
Q Consensus       453 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  528 (637)
                      +++|++|++++|++.+..+.... ..++|++|++++|++.+.  .  +..+..+++|++|++++|+++         .++
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------~l~  213 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVR-AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME---------TPT  213 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCC-CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---------CHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhc-cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---------chH
Confidence            56778888888877665544332 227888888888887542  1  233467888888888888886         222


Q ss_pred             c----cccCCCCCcEEEcCCCcccccCChhhhhcC---CCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccc
Q 042944          529 P----SLKKCNELKIIDAGDNKFSGTIPAWIGDTL---PKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP  601 (637)
Q Consensus       529 ~----~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l---~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p  601 (637)
                      .    .+..+++|++|++++|.+++.+|..+. .+   ++|++|+|++|+++ .+|..+.  ++|+.|++++|++++. |
T Consensus       214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~  288 (310)
T 4glp_A          214 GVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P  288 (310)
T ss_dssp             HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C
T ss_pred             HHHHHHHhcCCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c
Confidence            2    246778888899999988865576655 34   68899999999888 6777664  7889999999988853 4


Q ss_pred             ccccccccceeeccCCCeeEE
Q 042944          602 KCINNLTAMVEKASSNSTITH  622 (637)
Q Consensus       602 ~~l~~l~~L~~l~l~~n~l~~  622 (637)
                      . +..+++|++|++++|+|+.
T Consensus       289 ~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          289 Q-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             C-TTSCCCCSCEECSSTTTSC
T ss_pred             h-hhhCCCccEEECcCCCCCC
Confidence            3 6788888999999988753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=3.9e-20  Score=183.22  Aligned_cols=190  Identities=24%  Similarity=0.339  Sum_probs=99.1

Q ss_pred             CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEE
Q 042944          115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLH  194 (637)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~  194 (637)
                      ++|++|++++|.+....  .+..+ ++|++|++++|.+. .++.  +..+++|++|++++|+++.++ .+..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~l~--~~~~l-~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIE--GVQYL-NNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred             CCcCEEEeeCCCccCch--hhhcc-CCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence            45555555555554321  23333 55555555555554 4443  455555555555555555543 344555555555


Q ss_pred             cCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCC
Q 042944          195 LFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGN  274 (637)
Q Consensus       195 l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~  274 (637)
                      +++|.+.+                             . +.+..+++|++|++++|.+++..+  +..+++|+.|++++|
T Consensus       114 l~~n~l~~-----------------------------~-~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n  161 (308)
T 1h6u_A          114 LTSTQITD-----------------------------V-TPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNA  161 (308)
T ss_dssp             CTTSCCCC-----------------------------C-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             CCCCCCCC-----------------------------c-hhhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCC
Confidence            55555442                             2 224444445555555554443222  444555555555555


Q ss_pred             CCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCccc
Q 042944          275 QLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA  349 (637)
Q Consensus       275 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  349 (637)
                      .+.+..+ +..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+..   .+..+++|+.|++++|+++
T Consensus       162 ~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          162 QVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEE
T ss_pred             cCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeee
Confidence            5543322 4445666666666666654332  556666777777777666532   2566677777777777665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=5.2e-21  Score=182.49  Aligned_cols=196  Identities=18%  Similarity=0.185  Sum_probs=134.5

Q ss_pred             CCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCC-CCchhhhHHHhhcCCCcEEECCC-CCCCCCCCchhccCCCC
Q 042944           89 SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCG-LSNSAYHWLFKISSNLLALDLNS-NQLAGPIPDYAFSNMTA  166 (637)
Q Consensus        89 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~~~~~L~~L~L~~-n~l~~~l~~~~~~~l~~  166 (637)
                      ++++|++++|.++.+.+   ..+..+++|++|++++|. ++...+..+..+ ++|++|++++ |.++ .++..+|.++++
T Consensus        32 ~l~~L~l~~n~l~~i~~---~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~l~~~n~l~-~i~~~~f~~l~~  106 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPS---HAFSNLPNISRIYVSIDVTLQQLESHSFYNL-SKVTHIEIRNTRNLT-YIDPDALKELPL  106 (239)
T ss_dssp             TCCEEEEESCCCSEECT---TTTTTCTTCCEEEEECCSSCCEECTTTEESC-TTCCEEEEEEETTCC-EECTTSEECCTT
T ss_pred             cccEEEEeCCcceEECH---HHccCCCCCcEEeCCCCCCcceeCHhHcCCC-cCCcEEECCCCCCee-EcCHHHhCCCCC
Confidence            68888888888877754   345666888888888886 765555555555 7888888887 7777 676657778888


Q ss_pred             CCEEEcCCCcccchhhhcCCCCCCc---EEEcCCC-cCCCCchhHhhhcccCCCCccc-EEEcCCCCCCCCcCCcccCCC
Q 042944          167 LQHLNLSLNQISAISKSFGNMCGLK---TLHLFDN-NLTGQLPELFLNLSGCSKNSLE-ILKLGGNKLTGSLPDITEFSS  241 (637)
Q Consensus       167 L~~L~L~~n~l~~l~~~~~~l~~L~---~L~l~~n-~i~~~~~~~l~~l~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~  241 (637)
                      |++|++++|+++.+|. +..+++|+   +|++++| .+....+..|..++     +|+ .|++++|.+...++.....++
T Consensus       107 L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-----~L~~~L~l~~n~l~~i~~~~~~~~~  180 (239)
T 2xwt_C          107 LKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-----NETLTLKLYNNGFTSVQGYAFNGTK  180 (239)
T ss_dssp             CCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-----SSEEEEECCSCCCCEECTTTTTTCE
T ss_pred             CCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchh-----cceeEEEcCCCCCcccCHhhcCCCC
Confidence            8888888888887766 77777777   8888887 77755556677776     777 777777777644444333466


Q ss_pred             ccEEEccCCc-CCCCCCCcCCCC-CCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCC
Q 042944          242 LQELHLFDNK-LDGSFPEKFRKP-SPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDS  297 (637)
Q Consensus       242 L~~L~l~~n~-i~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n  297 (637)
                      |++|++++|. ++...+..|..+ ++|+.|++++|++....+.  .+++|+.|+++++
T Consensus       181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            7777777773 665555566666 6666666666666543332  4555666655544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=4.4e-22  Score=204.54  Aligned_cols=183  Identities=20%  Similarity=0.253  Sum_probs=83.9

Q ss_pred             cCCCCCCEEEcCCCcccc-----hhhhcCCCCCCcEEEcCCCcCCCCchhHhhh----c---------ccCCCCcccEEE
Q 042944          162 SNMTALQHLNLSLNQISA-----ISKSFGNMCGLKTLHLFDNNLTGQLPELFLN----L---------SGCSKNSLEILK  223 (637)
Q Consensus       162 ~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~----l---------~~~~~~~L~~L~  223 (637)
                      ..+++|++|++++|.+..     ++..+..+++|++|++++|.++...+..+..    +         +     +|++|+
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~-----~L~~L~  165 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP-----PLRSII  165 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC-----CCCEEE
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC-----CCcEEE
Confidence            445555555555555544     4444555555555555555554322222222    1         3     555555


Q ss_pred             cCCCCCCC-CcC----CcccCCCccEEEccCCcCCC-----CCCCcCCCCCCCcEEEcCCCCCC-----CCCCCCCCCCC
Q 042944          224 LGGNKLTG-SLP----DITEFSSLQELHLFDNKLDG-----SFPEKFRKPSPLVILNLDGNQLW-----GSLPDLSVFPF  288 (637)
Q Consensus       224 l~~n~~~~-~~~----~~~~~~~L~~L~l~~n~i~~-----~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~  288 (637)
                      +++|.+.. ..+    .+..+++|++|++++|.++.     ..+..+..+++|+.|++++|.++     .....+..+++
T Consensus       166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~  245 (386)
T 2ca6_A          166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN  245 (386)
T ss_dssp             CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence            55555441 111    23344455555555554441     11123444555555555555542     11122333555


Q ss_pred             CCEEEccCCcCCCC----Chhhhc--CCCCCCEEecCCCcCCC----ccchhhhcCCCCCcEEEccCCccc
Q 042944          289 LTRLDVSDSRLNGT----VSEGLG--RLSKLEFLDLFGNSLEG----MITESHVSNLSKLKYMDFSFNSLA  349 (637)
Q Consensus       289 L~~L~l~~n~~~~~----~~~~l~--~l~~L~~L~l~~n~~~~----~~~~~~~~~l~~L~~L~l~~n~~~  349 (637)
                      |++|++++|.+++.    ++..+.  .+++|+.|++++|.+.+    ..+.....++++|++|++++|+++
T Consensus       246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            55555555555432    233332  25555666665555554    122222244555555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.84  E-value=5e-20  Score=176.92  Aligned_cols=175  Identities=21%  Similarity=0.222  Sum_probs=87.6

Q ss_pred             CccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCCccEEEcccccccCcccccccccCCCccEEeC
Q 042944          410 NLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDV  486 (637)
Q Consensus       410 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  486 (637)
                      ..++++++++.++..... +  .+.++.|++++|.+.+..+..   +++|++|++++|++.+..+..+. ..++|++|++
T Consensus        15 ~~~~l~~~~~~l~~~p~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSG-I--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCSSCCSC-C--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEEC
T ss_pred             CCeEEecCCCCccccCCC-C--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCEEEC
Confidence            455666666666543322 1  145666666666665544432   34555555555555543332221 1255555555


Q ss_pred             CCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEE
Q 042944          487 SDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAIL  565 (637)
Q Consensus       487 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L  565 (637)
                      ++|.+++..+..|..+++|++|++++|.++         .++. .+..+++|++|++++|.++ .++...+..+++|+.|
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---------~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLK---------SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCC---------CcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEE
Confidence            555555444445555555555555555554         2222 2344555555555555554 3333222245555555


Q ss_pred             eccCccccccCCccccCCCCCcEeeCCCCcccc
Q 042944          566 SLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG  598 (637)
Q Consensus       566 ~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~  598 (637)
                      +|++|++++..+..+..+++|+.|++++|++.+
T Consensus       161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            555555554444445555555555555555543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=2e-20  Score=178.37  Aligned_cols=199  Identities=18%  Similarity=0.202  Sum_probs=112.5

Q ss_pred             CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCC-CCCCCCchhccCCCCCCEEEcCC-Ccccchh-hhcCCCCCCc
Q 042944          115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQ-LAGPIPDYAFSNMTALQHLNLSL-NQISAIS-KSFGNMCGLK  191 (637)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~-l~~~l~~~~~~~l~~L~~L~L~~-n~l~~l~-~~~~~l~~L~  191 (637)
                      ++|++|++++|.++...+..+..+ ++|++|++++|. ++ .++..+|.++++|++|++++ |+++.++ ..|.++++|+
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l-~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~  108 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNL-PNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK  108 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTC-TTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred             CcccEEEEeCCcceEECHHHccCC-CCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence            366667777666665544444444 666666666665 55 55555566666666666666 6666654 3456666666


Q ss_pred             EEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCC-cCCCCCCCcCCCCCCCc-EE
Q 042944          192 TLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDN-KLDGSFPEKFRKPSPLV-IL  269 (637)
Q Consensus       192 ~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~-~L  269 (637)
                      +|++++|.+.+ .|. +..+.     +|+                    .|++|++++| .++...+..|..+++|+ .|
T Consensus       109 ~L~l~~n~l~~-lp~-~~~l~-----~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L  161 (239)
T 2xwt_C          109 FLGIFNTGLKM-FPD-LTKVY-----STD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTL  161 (239)
T ss_dssp             EEEEEEECCCS-CCC-CTTCC-----BCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEE
T ss_pred             EEeCCCCCCcc-ccc-ccccc-----ccc--------------------cccEEECCCCcchhhcCcccccchhcceeEE
Confidence            66666666553 222 33333     333                    1115555555 55544444555666666 66


Q ss_pred             EcCCCCCCCCCCCCCCCCCCCEEEccCCc-CCCCChhhhcCC-CCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCC
Q 042944          270 NLDGNQLWGSLPDLSVFPFLTRLDVSDSR-LNGTVSEGLGRL-SKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFN  346 (637)
Q Consensus       270 ~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  346 (637)
                      ++++|.+.......+..++|++|++++|+ ++...+..+..+ ++|+.|++++|.+++. +.   ..+++|+.|+++++
T Consensus       162 ~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~---~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          162 KLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PS---KGLEHLKELIARNT  236 (239)
T ss_dssp             ECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CC---TTCTTCSEEECTTC
T ss_pred             EcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Ch---hHhccCceeeccCc
Confidence            66666665444433334566666666663 654445556666 6666666666666543 22   14556666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=6.4e-22  Score=203.31  Aligned_cols=256  Identities=19%  Similarity=0.211  Sum_probs=195.7

Q ss_pred             hhhcCCCCCcEEEcCCCCCCCCCcccc-cccCCCCCccEEECCCCCCC---chhhhHH-------HhhcCCCcEEECCCC
Q 042944           82 VTITSLASLRDLYLASSTLLSINRPSL-SSMNSSTSLTLLDLSSCGLS---NSAYHWL-------FKISSNLLALDLNSN  150 (637)
Q Consensus        82 ~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~n~i~---~~~~~~~-------~~~~~~L~~L~L~~n  150 (637)
                      ..+..+++|++|++++|.+.+..+..+ ..+..+++|++|+|++|.+.   +..|..+       ..+ ++|++|++++|
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~-~~L~~L~Ls~n  104 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC-PKLHTVRLSDN  104 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC-TTCCEEECCSC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC-CcccEEECCCC
Confidence            346778999999999999987643322 34778899999999997543   3334444       344 99999999999


Q ss_pred             CCCCC----CCchhccCCCCCCEEEcCCCcccc-----hhhhcCCC---------CCCcEEEcCCCcCCC-Cch---hHh
Q 042944          151 QLAGP----IPDYAFSNMTALQHLNLSLNQISA-----ISKSFGNM---------CGLKTLHLFDNNLTG-QLP---ELF  208 (637)
Q Consensus       151 ~l~~~----l~~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~~l---------~~L~~L~l~~n~i~~-~~~---~~l  208 (637)
                      .+.+.    ++. .+..+++|++|++++|.++.     ++..+..+         ++|++|++++|.+.. ..+   ..+
T Consensus       105 ~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          105 AFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cCCHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            99842    454 67899999999999999975     34445555         899999999999973 333   466


Q ss_pred             hhcccCCCCcccEEEcCCCCCCC-----CcC-CcccCCCccEEEccCCcCC----CCCCCcCCCCCCCcEEEcCCCCCCC
Q 042944          209 LNLSGCSKNSLEILKLGGNKLTG-----SLP-DITEFSSLQELHLFDNKLD----GSFPEKFRKPSPLVILNLDGNQLWG  278 (637)
Q Consensus       209 ~~l~~~~~~~L~~L~l~~n~~~~-----~~~-~~~~~~~L~~L~l~~n~i~----~~~~~~l~~l~~L~~L~l~~~~~~~  278 (637)
                      ..++     +|++|++++|.+..     ..+ .+..+++|++|++++|.++    ...+..+..+++|++|++++|.+..
T Consensus       184 ~~~~-----~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~  258 (386)
T 2ca6_A          184 QSHR-----LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA  258 (386)
T ss_dssp             HHCT-----TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred             HhCC-----CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence            6777     99999999999873     233 6788999999999999985    3456678899999999999999875


Q ss_pred             C-----CCCC--CCCCCCCEEEccCCcCCC----CChhhh-cCCCCCCEEecCCCcCCCccc--hhhhcCCCCCcEEEcc
Q 042944          279 S-----LPDL--SVFPFLTRLDVSDSRLNG----TVSEGL-GRLSKLEFLDLFGNSLEGMIT--ESHVSNLSKLKYMDFS  344 (637)
Q Consensus       279 ~-----~~~~--~~~~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~  344 (637)
                      .     ...+  ..+++|++|++++|.+++    .++..+ .++++|+.|++++|.+++..+  ......+++++.+++.
T Consensus       259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~  338 (386)
T 2ca6_A          259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD  338 (386)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred             hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence            4     1223  238999999999999997    366666 568999999999999987653  3233334555544443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=2.2e-20  Score=185.60  Aligned_cols=80  Identities=30%  Similarity=0.461  Sum_probs=39.2

Q ss_pred             CccEEeCCCCCCcccCchhhhcc---CCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhh
Q 042944          480 YFSYLDVSDNLLSGELPDCLLRW---QALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIG  556 (637)
Q Consensus       480 ~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~  556 (637)
                      +|++|++++|.+++..|..+..+   ++|++|++++|+++         .+|..+.  ++|++|++++|+++ .+|. + 
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~---------~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~-  290 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE---------QVPKGLP--AKLRVLDLSSNRLN-RAPQ-P-  290 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC---------SCCSCCC--SCCSCEECCSCCCC-SCCC-T-
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC---------chhhhhc--CCCCEEECCCCcCC-CCch-h-
Confidence            33444444444443333333333   45555555555555         3343332  45666666666665 3333 2 


Q ss_pred             hcCCCCcEEeccCcccc
Q 042944          557 DTLPKLAILSLRSNQFH  573 (637)
Q Consensus       557 ~~l~~L~~L~L~~n~~~  573 (637)
                      ..+++|+.|+|++|+++
T Consensus       291 ~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          291 DELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TSCCCCSCEECSSTTTS
T ss_pred             hhCCCccEEECcCCCCC
Confidence            24566666666666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=6.6e-21  Score=192.05  Aligned_cols=221  Identities=21%  Similarity=0.207  Sum_probs=131.2

Q ss_pred             CCccEEECCCCCCCchhhhHHHhh-cCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccc--hhhhcCCCCCCc
Q 042944          115 TSLTLLDLSSCGLSNSAYHWLFKI-SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA--ISKSFGNMCGLK  191 (637)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~-~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~  191 (637)
                      ..++.++++++.+.+..   +... .+++++|++++|.+.+..+.  +..+++|++|++++|.+..  ++..+..+++|+
T Consensus        47 ~~~~~l~l~~~~~~~~~---~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCCHHH---HHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hhheeeccccccCCHHH---HHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            34677777777766322   2221 16788888888877744433  5567888888888887765  666777888888


Q ss_pred             EEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCC-CCCC--CcCCcccCCCccEEEccCC-cCCCC-CCCcCCCCC-C
Q 042944          192 TLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGN-KLTG--SLPDITEFSSLQELHLFDN-KLDGS-FPEKFRKPS-P  265 (637)
Q Consensus       192 ~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n-~~~~--~~~~~~~~~~L~~L~l~~n-~i~~~-~~~~l~~l~-~  265 (637)
                      +|++++|.+.+..+..+..++     +|++|++++| .++.  ....+..+++|++|++++| .+++. .+..+..++ +
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~-----~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~  196 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNS-----NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  196 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCT-----TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             EEeCcCcccCHHHHHHHhcCC-----CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence            888888877766677777666     7888888877 4553  2222556667777777777 65532 233445555 6


Q ss_pred             CcEEEcCCCC--CC-C-CCCCCCCCCCCCEEEccCCc-CCCCChhhhcCCCCCCEEecCCCc-CCCccchhhhcCCCCCc
Q 042944          266 LVILNLDGNQ--LW-G-SLPDLSVFPFLTRLDVSDSR-LNGTVSEGLGRLSKLEFLDLFGNS-LEGMITESHVSNLSKLK  339 (637)
Q Consensus       266 L~~L~l~~~~--~~-~-~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~  339 (637)
                      |++|++++|.  ++ . ....+..+++|++|++++|. +++..+..+..+++|+.|++++|. +... ....+.++++|+
T Consensus       197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~  275 (336)
T 2ast_B          197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE-TLLELGEIPTLK  275 (336)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG-GGGGGGGCTTCC
T ss_pred             CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH-HHHHHhcCCCCC
Confidence            6666666663  22 1 11112235566666666665 444444455555666666666653 2111 111344555555


Q ss_pred             EEEccCC
Q 042944          340 YMDFSFN  346 (637)
Q Consensus       340 ~L~l~~n  346 (637)
                      .|++++|
T Consensus       276 ~L~l~~~  282 (336)
T 2ast_B          276 TLQVFGI  282 (336)
T ss_dssp             EEECTTS
T ss_pred             EEeccCc
Confidence            5555555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=1.5e-20  Score=189.48  Aligned_cols=198  Identities=19%  Similarity=0.146  Sum_probs=102.0

Q ss_pred             CCcEEEcCCCcCCCCchhHhhhc--ccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCC-CCCcCCCCCC
Q 042944          189 GLKTLHLFDNNLTGQLPELFLNL--SGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGS-FPEKFRKPSP  265 (637)
Q Consensus       189 ~L~~L~l~~n~i~~~~~~~l~~l--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~l~~l~~  265 (637)
                      .++.++++++.+.   +..+..+  .     +++.|++++|.+....+.+..+++|++|++++|.+++. .+..+..+++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~-----~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~  119 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQ-----GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK  119 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHT-----TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred             hheeeccccccCC---HHHHHhhhhc-----cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence            3556666665543   3444444  4     66666666666665555555666666666666665533 4444556666


Q ss_pred             CcEEEcCCCCCCCCCC-CCCCCCCCCEEEccCC-cCCC-CChhhhcCCCCCCEEecCCC-cCCCccchhhhcCCC-CCcE
Q 042944          266 LVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDS-RLNG-TVSEGLGRLSKLEFLDLFGN-SLEGMITESHVSNLS-KLKY  340 (637)
Q Consensus       266 L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n-~~~~-~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~l~-~L~~  340 (637)
                      |++|++++|.+.+..+ .+..+++|++|++++| .+++ ..+..+..+++|+.|++++| .+++......+..++ +|++
T Consensus       120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~  199 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ  199 (336)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred             CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence            6666666665543222 2333566666666666 4443 23444555666666666666 555432233455566 6666


Q ss_pred             EEccCCc--cc-ccccCCCCCCCceeEEeccCCc-CCCCccccccCCCCccEEEeeCC
Q 042944          341 MDFSFNS--LA-LNFSFGWLPPFQLESIGLLHCK-LGPHFPKWLQSQKNYYFLDISDT  394 (637)
Q Consensus       341 L~l~~n~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~n  394 (637)
                      |++++|.  ++ ...+..+..+++|++|++++|. ++...+..+..+++|++|++++|
T Consensus       200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            6666663  22 1111122233344444444444 33333334444444444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.79  E-value=7.6e-19  Score=186.52  Aligned_cols=189  Identities=22%  Similarity=0.355  Sum_probs=129.2

Q ss_pred             CccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccc
Q 042944          385 NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNN  464 (637)
Q Consensus       385 ~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n  464 (637)
                      +++.|++++|.+.+ .|..+   +++|++|++++|.++.. +   ..+++|+.|++++|.++++.. ...+|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS
T ss_pred             CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCC
Confidence            56666666666655 23222   25666666666666632 2   335666677777776666333 3347777777777


Q ss_pred             cccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCC
Q 042944          465 KFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGD  544 (637)
Q Consensus       465 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~  544 (637)
                      ++++...     ..++|+.|++++|.+++ +|.   .+++|+.|++++|+++         .+|. +.  ++|+.|++++
T Consensus       131 ~l~~lp~-----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~---------~lp~-l~--~~L~~L~Ls~  189 (571)
T 3cvr_A          131 QLTMLPE-----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT---------FLPE-LP--ESLEALDVST  189 (571)
T ss_dssp             CCSCCCC-----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS---------CCCC-CC--TTCCEEECCS
T ss_pred             cCCCCCC-----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC---------Ccch-hh--CCCCEEECcC
Confidence            7766333     23778888888888874 454   4678888888888887         4555 43  7888888888


Q ss_pred             CcccccCChhhhhcCCCC-------cEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccccccc
Q 042944          545 NKFSGTIPAWIGDTLPKL-------AILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTA  609 (637)
Q Consensus       545 n~l~~~~~~~l~~~l~~L-------~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~  609 (637)
                      |.++ .+|. +..   +|       +.|+|++|+|+ .+|..+..+++|+.|++++|++++.+|..|..++.
T Consensus       190 N~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          190 NLLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             SCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             CCCC-chhh-HHH---hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            8887 7776 432   56       88888888888 68888888888888888888888888888877654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=6.2e-18  Score=162.29  Aligned_cols=179  Identities=20%  Similarity=0.175  Sum_probs=133.4

Q ss_pred             cccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCC-CCCCCCCEEEccC
Q 042944          218 SLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDL-SVFPFLTRLDVSD  296 (637)
Q Consensus       218 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~  296 (637)
                      ..++++++++.+...+..+.  +.++.|++++|.+++..+..|..+++|++|++++|.+....+.. ..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            56777777777775554443  47788888888877777777778888888888888877665553 4477888888888


Q ss_pred             CcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCc
Q 042944          297 SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHF  376 (637)
Q Consensus       297 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  376 (637)
                      |.+++..+..+..+++|+.|++++|.+.+. +...+.++++|++|++++|.+....+..+..+++|+.|++++|.+....
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCc-ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            888776666777788888888888887753 3345677888888888888887666666777777778888777777666


Q ss_pred             cccccCCCCccEEEeeCCCCCCc
Q 042944          377 PKWLQSQKNYYFLDISDTEISDA  399 (637)
Q Consensus       377 ~~~l~~~~~L~~L~l~~n~i~~~  399 (637)
                      +..+..+++|+.|++++|.+...
T Consensus       172 ~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          172 HGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCTT
T ss_pred             HHHHhCCCCCCEEEeeCCceeCC
Confidence            66777888888888888887665

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=2e-18  Score=169.29  Aligned_cols=193  Identities=23%  Similarity=0.310  Sum_probs=119.7

Q ss_pred             CchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhh
Q 042944           54 INSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYH  133 (637)
Q Consensus        54 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~  133 (637)
                      ...+.....+.+..........        +..+++|++|++++|.+.++     +.+..+++|++|++++|.+++..+ 
T Consensus        20 d~~l~~~~~~~l~~~~~~~~~~--------~~~l~~L~~L~l~~~~i~~~-----~~~~~l~~L~~L~L~~n~l~~~~~-   85 (291)
T 1h6t_A           20 DDAFAETIKDNLKKKSVTDAVT--------QNELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKP-   85 (291)
T ss_dssp             SHHHHHHHHHHTTCSCTTSEEC--------HHHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG-
T ss_pred             CHHHHHHHHHHhcCCCcccccc--------hhhcCcccEEEccCCCcccC-----hhHhcCCCCCEEEccCCccCCCcc-
Confidence            3344444445555554443332        45677788888888777765     335666777888888777776544 


Q ss_pred             HHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhccc
Q 042944          134 WLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSG  213 (637)
Q Consensus       134 ~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~  213 (637)
                       +..+ ++|++|++++|.+. .++.  +..+++|++|++++|+++.+ ..+..+++|++|++++|.+.+.  ..+..++ 
T Consensus        86 -l~~l-~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~-  156 (291)
T 1h6t_A           86 -LANL-KNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLT-  156 (291)
T ss_dssp             -GTTC-TTCCEEECCSSCCC-CGGG--GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCT-
T ss_pred             -cccC-CCCCEEECCCCcCC-CChh--hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc--hhhccCC-
Confidence             4444 77777777777776 5554  77777777777777777776 3466777777777777776643  4455555 


Q ss_pred             CCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCC
Q 042944          214 CSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQL  276 (637)
Q Consensus       214 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~  276 (637)
                          +|++|++++|.+....+ +..+++|++|++++|.+++.  ..+..+++|+.|++++|++
T Consensus       157 ----~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          157 ----KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             ----TCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEE
T ss_pred             ----CCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcc
Confidence                66666666666664433 55555666666666655532  1244455555555555444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=5.3e-18  Score=180.02  Aligned_cols=179  Identities=19%  Similarity=0.290  Sum_probs=151.3

Q ss_pred             CCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCC
Q 042944          409 PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSD  488 (637)
Q Consensus       409 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~  488 (637)
                      .+++.|++++|.+++.... +  +++|+.|++++|.++.+. ..+++|++|++++|++++. +. ..   .+|+.|++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~-l--~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~i-p~-l~---~~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDN-L--PPQITVLEITQNALISLP-ELPASLEYLDACDNRLSTL-PE-LP---ASLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSC-C--CTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCC-CC-CC---TTCCEEECCS
T ss_pred             CCccEEEeCCCCCCccCHh-H--cCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCc-ch-hh---cCCCEEECCC
Confidence            4899999999999874433 3  478999999999999544 6789999999999999984 43 22   4999999999


Q ss_pred             CCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEecc
Q 042944          489 NLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLR  568 (637)
Q Consensus       489 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~  568 (637)
                      |.+++ +|.   .+++|+.|++++|.++         .+|.   .+++|++|++++|.++ .+|. +.   ++|+.|+|+
T Consensus       130 N~l~~-lp~---~l~~L~~L~Ls~N~l~---------~lp~---~l~~L~~L~Ls~N~L~-~lp~-l~---~~L~~L~Ls  188 (571)
T 3cvr_A          130 NQLTM-LPE---LPALLEYINADNNQLT---------MLPE---LPTSLEVLSVRNNQLT-FLPE-LP---ESLEALDVS  188 (571)
T ss_dssp             SCCSC-CCC---CCTTCCEEECCSSCCS---------CCCC---CCTTCCEEECCSSCCS-CCCC-CC---TTCCEEECC
T ss_pred             CcCCC-CCC---cCccccEEeCCCCccC---------cCCC---cCCCcCEEECCCCCCC-Ccch-hh---CCCCEEECc
Confidence            99996 665   6899999999999998         5665   5789999999999998 5887 32   899999999


Q ss_pred             CccccccCCccccCCCCC-------cEeeCCCCcccccccccccccccceeeccCCCeeEE
Q 042944          569 SNQFHGSIPRNLCRLSKI-------QLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH  622 (637)
Q Consensus       569 ~n~~~~~~~~~l~~l~~L-------~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~~  622 (637)
                      +|+++ .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|++++|+++.
T Consensus       189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             SSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             CCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence            99999 7777 654  78       99999999999 689999999999999999999963

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=3.7e-18  Score=172.46  Aligned_cols=220  Identities=15%  Similarity=0.095  Sum_probs=137.6

Q ss_pred             eeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccE-EECCCCcCCCcccccccCCCCCCeEeC
Q 042944          362 LESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYY-LNLSHNHLEGTVLDLSLNYAGYPGIDL  440 (637)
Q Consensus       362 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~-L~l~~n~i~~~~~~~~~~~~~L~~L~l  440 (637)
                      +++|++++|+++...+..|.++++|++|+|++|.+.+..+...+..++++.+ +.+.+|+++...+..+..+++|++|++
T Consensus        32 l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l  111 (350)
T 4ay9_X           32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI  111 (350)
T ss_dssp             CSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred             CCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence            4444444444443333445566666666666666554444333222344443 444556666666666666677777777


Q ss_pred             CCCcCcCCCCCC---CCCccEEEccc-ccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccC-ccC
Q 042944          441 SSNDFEGPVPPV---PGNVTSLNLSN-NKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLAN-NNF  515 (637)
Q Consensus       441 ~~n~~~~~~~~~---~~~L~~L~L~~-n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l  515 (637)
                      ++|.+....+..   ..++..+++.+ +++....+..+......++.|++++|.++...+.++ ..++|++|++++ |.+
T Consensus       112 ~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l  190 (350)
T 4ay9_X          112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNL  190 (350)
T ss_dssp             EEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTC
T ss_pred             cccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcc
Confidence            777666544433   23455677655 444433333222222578899999999985444444 557899999985 666


Q ss_pred             CCCccccccccCCc-cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCC
Q 042944          516 SGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLN  594 (637)
Q Consensus       516 ~~~~~~~~~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n  594 (637)
                      +         .+|. .+..+++|++|++++|+++ .+|...   +.+|+.|.+.++.-...+| .+..+++|+.++++++
T Consensus       191 ~---------~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          191 E---------ELPNDVFHGASGPVILDISRTRIH-SLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             C---------CCCTTTTTTEECCSEEECTTSCCC-CCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             c---------CCCHHHhccCcccchhhcCCCCcC-ccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            6         5665 4688999999999999998 888754   4567777766654333677 4788999999999876


Q ss_pred             cc
Q 042944          595 SI  596 (637)
Q Consensus       595 ~l  596 (637)
                      ..
T Consensus       257 ~~  258 (350)
T 4ay9_X          257 SH  258 (350)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.76  E-value=5e-18  Score=159.01  Aligned_cols=151  Identities=21%  Similarity=0.252  Sum_probs=73.5

Q ss_pred             CeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccC
Q 042944          436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF  515 (637)
Q Consensus       436 ~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  515 (637)
                      +.++++++.++.+....++++++|++++|++.+..+..+ ...++|++|++++|.+++..+..|.++++|+.|++++|.+
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~-~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAF-SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHh-hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            455666666555443344555555555555554333211 1124555555555555544455555555555555555555


Q ss_pred             CCCccccccccCCcc-ccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCC
Q 042944          516 SGNFLTFFVGEIPPS-LKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLN  594 (637)
Q Consensus       516 ~~~~~~~~~~~~~~~-l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n  594 (637)
                      +         .+|.. +..+++|++|++++|.+++..+..+ ..+++|+.|+|++|++++..+..|..+++|+.|++++|
T Consensus        93 ~---------~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B           93 T---------ELPKSLFEGLFSLQLLLLNANKINCLRVDAF-QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             C---------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             C---------ccCHhHccCCCCCCEEECCCCCCCEeCHHHc-CCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            4         23322 3445555555555555542222222 24555555555555555433344555555555555555


Q ss_pred             ccc
Q 042944          595 SIS  597 (637)
Q Consensus       595 ~l~  597 (637)
                      ++.
T Consensus       163 ~~~  165 (220)
T 2v9t_B          163 PFI  165 (220)
T ss_dssp             CEE
T ss_pred             CcC
Confidence            544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=8.3e-18  Score=157.52  Aligned_cols=155  Identities=17%  Similarity=0.155  Sum_probs=102.8

Q ss_pred             CeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccC
Q 042944          436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF  515 (637)
Q Consensus       436 ~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  515 (637)
                      +.+++++|.++.+....+..+++|++++|++++..+...+...++|++|++++|.+++..+..|..+++|++|++++|.+
T Consensus        14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence            46778887777654445566777777777777654443333347777777777777766666777777777777777777


Q ss_pred             CCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCc
Q 042944          516 SGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNS  595 (637)
Q Consensus       516 ~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~  595 (637)
                      ++        ..+..+..+++|++|++++|.+++..|..+. .+++|+.|+|++|++++..|..|..+++|+.|++++|+
T Consensus        94 ~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           94 EN--------VQHKMFKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CC--------CCGGGGTTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             Cc--------cCHhHhcCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            62        1223356677777777777777643344444 57777777777777776556677777777777777777


Q ss_pred             cccc
Q 042944          596 ISGA  599 (637)
Q Consensus       596 l~~~  599 (637)
                      +.+.
T Consensus       165 l~c~  168 (220)
T 2v70_A          165 FNCN  168 (220)
T ss_dssp             EECS
T ss_pred             CcCC
Confidence            7643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.75  E-value=7.1e-18  Score=170.36  Aligned_cols=103  Identities=16%  Similarity=0.071  Sum_probs=49.9

Q ss_pred             EEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcE-EEccCC
Q 042944          268 ILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKY-MDFSFN  346 (637)
Q Consensus       268 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~-L~l~~n  346 (637)
                      +++.++++++.++..+  .+++++|++++|.++...+.+|.++++|+.|++++|.+.+.++...|.+++++.+ +.+.+|
T Consensus        13 ~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             EEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             EEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            3444444444333222  2455566666666554444455666666666666666554444445555555543 333445


Q ss_pred             cccccccCCCCCCCceeEEeccCCcC
Q 042944          347 SLALNFSFGWLPPFQLESIGLLHCKL  372 (637)
Q Consensus       347 ~~~~~~~~~~~~~~~L~~L~l~~~~~  372 (637)
                      .+....+..+..+++|++|++.+|.+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l  116 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGI  116 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECC
T ss_pred             cccccCchhhhhcccccccccccccc
Confidence            55443333333333344444433333

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=1.6e-17  Score=162.86  Aligned_cols=81  Identities=23%  Similarity=0.315  Sum_probs=39.0

Q ss_pred             CCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEE
Q 042944          114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTL  193 (637)
Q Consensus       114 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L  193 (637)
                      +++|++|++++|.+....  .+..+ ++|++|++++|.++ .++.  +.++++|++|++++|+++.++. +..+++|++|
T Consensus        45 l~~L~~L~l~~~~i~~~~--~~~~l-~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL  117 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred             cCcccEEEccCCCcccCh--hHhcC-CCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence            345555555555554331  13333 55555555555554 3433  4455555555555555554432 4445555555


Q ss_pred             EcCCCcCC
Q 042944          194 HLFDNNLT  201 (637)
Q Consensus       194 ~l~~n~i~  201 (637)
                      ++++|.+.
T Consensus       118 ~L~~n~i~  125 (291)
T 1h6t_A          118 SLEHNGIS  125 (291)
T ss_dssp             ECTTSCCC
T ss_pred             ECCCCcCC
Confidence            55555444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.7e-17  Score=178.32  Aligned_cols=197  Identities=23%  Similarity=0.318  Sum_probs=160.0

Q ss_pred             cCchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhh
Q 042944           53 PINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAY  132 (637)
Q Consensus        53 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~  132 (637)
                      +...+..+..+.+..+.......        +..+++|+.|++++|.+..+     +.+..+++|++|+|++|.+.+..+
T Consensus        16 pd~~l~~l~~l~l~~~~i~~~~~--------~~~L~~L~~L~l~~n~i~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~   82 (605)
T 1m9s_A           16 PDDAFAETIKDNLKKKSVTDAVT--------QNELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKP   82 (605)
T ss_dssp             CSHHHHHHHHHHTTCSCTTSEEC--------HHHHTTCCCCBCTTCCCCCC-----TTGGGCTTCCEEECTTSCCCCCGG
T ss_pred             CcHHHHHHHHHhccCCCcccccc--------hhcCCCCCEEECcCCCCCCC-----hHHccCCCCCEEEeeCCCCCCChh
Confidence            44555666667777766555443        56788999999999998876     357778999999999999987665


Q ss_pred             hHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcc
Q 042944          133 HWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLS  212 (637)
Q Consensus       133 ~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~  212 (637)
                        +..+ ++|++|+|++|.+. .++.  +..+++|++|+|++|++..++ .+..+++|+.|++++|.+.+.  ..+..++
T Consensus        83 --l~~l-~~L~~L~Ls~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~  153 (605)
T 1m9s_A           83 --LTNL-KNLGWLFLDENKIK-DLSS--LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLT  153 (605)
T ss_dssp             --GGGC-TTCCEEECCSSCCC-CCTT--STTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCT
T ss_pred             --hccC-CCCCEEECcCCCCC-CChh--hccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccC
Confidence              5665 99999999999998 6764  889999999999999999874 588899999999999998754  5677777


Q ss_pred             cCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCC
Q 042944          213 GCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGS  279 (637)
Q Consensus       213 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~  279 (637)
                           +|+.|++++|.+....+ +..+++|+.|+|++|.+++.  ..+..+++|+.|++++|.+...
T Consensus       154 -----~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          154 -----KLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             -----TCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             -----CCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence                 99999999999886655 88888999999999988754  4578888888888888887643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.75  E-value=1.1e-17  Score=155.66  Aligned_cols=179  Identities=19%  Similarity=0.248  Sum_probs=98.9

Q ss_pred             EEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEccccccc
Q 042944          388 FLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFS  467 (637)
Q Consensus       388 ~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~  467 (637)
                      .++++++.+..... .   .++++++|++++|.+++..+..+..+++|++|++++|++.+..+..+              
T Consensus        11 ~v~c~~~~l~~~p~-~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------   72 (208)
T 2o6s_A           11 TVECYSQGRTSVPT-G---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF--------------   72 (208)
T ss_dssp             EEECCSSCCSSCCS-C---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT--------------
T ss_pred             EEEecCCCccCCCC-C---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhc--------------
Confidence            44555555544221 1   13566777777777665555555566666666666665554332211              


Q ss_pred             CcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccCCCCCcEEEcCCCc
Q 042944          468 GPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNK  546 (637)
Q Consensus       468 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~l~~L~~L~ls~n~  546 (637)
                              ...++|++|++++|.+++..+..+..+++|++|++++|.++         .++. .+..+++|++|++++|.
T Consensus        73 --------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---------~~~~~~~~~l~~L~~L~l~~N~  135 (208)
T 2o6s_A           73 --------NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ---------SLPDGVFDKLTQLKDLRLYQNQ  135 (208)
T ss_dssp             --------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTCTTCCEEECCSSC
T ss_pred             --------CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc---------ccCHhHhccCCcCCEEECCCCc
Confidence                    11145555555555555444445566666666666666665         2222 34556666666666666


Q ss_pred             ccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccccccccccc
Q 042944          547 FSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTA  609 (637)
Q Consensus       547 l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~  609 (637)
                      ++ .++...+..+++|+.|++++|++.       +.+++|+.|+++.|.+++.+|+.++.++.
T Consensus       136 l~-~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          136 LK-SVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CS-CCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             cc-eeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            65 444443335666666666666554       22345666666666666666666665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=1.4e-17  Score=168.99  Aligned_cols=175  Identities=19%  Similarity=0.182  Sum_probs=128.3

Q ss_pred             CeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccC
Q 042944          436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF  515 (637)
Q Consensus       436 ~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  515 (637)
                      +.++++++.+..+....+..++.|++++|++++..+..+....++|+.|++++|.+++..+..|..+++|+.|++++|++
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence            45666666666544444566778888888777665554432348888888888888877777888888899999999888


Q ss_pred             CCCccccccccCC-ccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCcc-c---cCCCCCcEee
Q 042944          516 SGNFLTFFVGEIP-PSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRN-L---CRLSKIQLLD  590 (637)
Q Consensus       516 ~~~~~~~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~-l---~~l~~L~~L~  590 (637)
                      +         .++ ..+..+++|++|++++|.+++..+..+. .+++|+.|+|++|++++ +|.. |   ..+++|+.|+
T Consensus       101 ~---------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~  169 (361)
T 2xot_A          101 H---------TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLD  169 (361)
T ss_dssp             C---------EECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEE
T ss_pred             C---------cCCHHHhCCCcCCCEEECCCCcccEECHHHhC-CcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEE
Confidence            7         333 3577888899999999988743344444 68889999999998884 5444 3   5688889999


Q ss_pred             CCCCccccccccccccccc--ceeeccCCCeeE
Q 042944          591 FSLNSISGAIPKCINNLTA--MVEKASSNSTIT  621 (637)
Q Consensus       591 ls~n~l~~~~p~~l~~l~~--L~~l~l~~n~l~  621 (637)
                      |++|++++..+..|..++.  |+.|++++|++.
T Consensus       170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            9999888665567777776  478888888886

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=2.2e-17  Score=155.73  Aligned_cols=153  Identities=22%  Similarity=0.202  Sum_probs=101.2

Q ss_pred             CCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCcc
Q 042944          435 YPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNN  514 (637)
Q Consensus       435 L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  514 (637)
                      .+.++.+++.+..+....+++|++|++++|++++..+..+. ..++|+.|++++|.++...+..|..+++|+.|++++|+
T Consensus        21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFD-SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhh-CccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            45677777777665555567777777777777765443332 22677777777777765555566777777777777777


Q ss_pred             CCCCccccccccCCc-cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCC
Q 042944          515 FSGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSL  593 (637)
Q Consensus       515 l~~~~~~~~~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~  593 (637)
                      ++         .++. .+..+++|++|++++|.++ .+|..+. .+++|+.|+|++|++++..+..+..+++|+.|++++
T Consensus       100 l~---------~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          100 LT---------VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CC---------CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CC---------ccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            66         3333 3566777777777777776 6666665 577777777777777744445566677777777777


Q ss_pred             Cccccc
Q 042944          594 NSISGA  599 (637)
Q Consensus       594 n~l~~~  599 (637)
                      |++...
T Consensus       169 N~~~c~  174 (229)
T 3e6j_A          169 NPWDCE  174 (229)
T ss_dssp             SCBCTT
T ss_pred             CCccCC
Confidence            776644

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=4e-17  Score=152.89  Aligned_cols=152  Identities=18%  Similarity=0.219  Sum_probs=112.7

Q ss_pred             cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCc-hhhhccCCCcEEeccCccCCCCccccccccCCccccCCC
Q 042944          457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELP-DCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCN  535 (637)
Q Consensus       457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~  535 (637)
                      +++++++|.++..+..+.    +.+++|++++|.+++..+ ..|..+++|+.|++++|.+++        ..+..+..++
T Consensus        14 ~~l~~s~n~l~~iP~~~~----~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~--------i~~~~~~~l~   81 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD--------IEEGAFEGAS   81 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC----TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE--------ECTTTTTTCT
T ss_pred             CEeEeCCCCcccCccCCC----CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE--------ECHHHhCCCC
Confidence            577888887775443221    566788888888876533 457788888888888888772        2223577788


Q ss_pred             CCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeecc
Q 042944          536 ELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKAS  615 (637)
Q Consensus       536 ~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l  615 (637)
                      +|++|++++|.++ .++...+..+++|++|+|++|++++..|..|..+++|+.|++++|.+++..|..|..+++|++|++
T Consensus        82 ~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  160 (220)
T 2v70_A           82 GVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL  160 (220)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence            8888888888887 555554446888888888888888666777888888888888888888777788888888888888


Q ss_pred             CCCeeE
Q 042944          616 SNSTIT  621 (637)
Q Consensus       616 ~~n~l~  621 (637)
                      ++|+++
T Consensus       161 ~~N~l~  166 (220)
T 2v70_A          161 LANPFN  166 (220)
T ss_dssp             CSCCEE
T ss_pred             cCcCCc
Confidence            888875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=1.7e-17  Score=178.25  Aligned_cols=191  Identities=20%  Similarity=0.300  Sum_probs=147.9

Q ss_pred             CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEE
Q 042944          115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLH  194 (637)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~  194 (637)
                      ..+..+++..+.+.+...  +..+ ++|+.|++++|.+. .++.  +..+++|++|+|++|++..++. +..+++|+.|+
T Consensus        21 ~~l~~l~l~~~~i~~~~~--~~~L-~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~   93 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLF   93 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHH-TTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEE
T ss_pred             HHHHHHhccCCCcccccc--hhcC-CCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEE
Confidence            456667778777775544  4555 88999999999987 7765  8889999999999999998866 88899999999


Q ss_pred             cCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCC
Q 042944          195 LFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGN  274 (637)
Q Consensus       195 l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~  274 (637)
                      +++|.+.+ . ..+..++     +|+.|++++|.+.. ++.+..+++|+.|++++|.+++.  ..+..+++|+.|++++|
T Consensus        94 Ls~N~l~~-l-~~l~~l~-----~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A           94 LDENKIKD-L-SSLKDLK-----KLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             CCSSCCCC-C-TTSTTCT-----TCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred             CcCCCCCC-C-hhhccCC-----CCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence            99998874 2 3566666     88888888888885 45677888888888888888754  56777888888888888


Q ss_pred             CCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCC
Q 042944          275 QLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG  325 (637)
Q Consensus       275 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  325 (637)
                      .+.+..+ +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+
T Consensus       164 ~l~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          164 QISDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             cCCCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            8776555 55677888888888877753  346777778888888777765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=1.7e-16  Score=147.55  Aligned_cols=149  Identities=23%  Similarity=0.290  Sum_probs=71.5

Q ss_pred             cEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccE
Q 042944          143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEI  221 (637)
Q Consensus       143 ~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~  221 (637)
                      +.++++++.++ .+|.   .-.++|++|++++|+++.++. .|.++++|++|++++|.+....+..|..++     +|++
T Consensus        10 ~~v~c~~~~l~-~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~   80 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-----SLTY   80 (208)
T ss_dssp             TEEECCSSCCS-SCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-----TCCE
T ss_pred             CEEEecCCCcc-CCCC---CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-----CcCE
Confidence            34556666655 5554   123456666666666665433 345566666666666655544444444444     5555


Q ss_pred             EEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCC-CCCCCCCEEEccCCcCC
Q 042944          222 LKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDL-SVFPFLTRLDVSDSRLN  300 (637)
Q Consensus       222 L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~  300 (637)
                      |++++|.+..                       ..+..+..+++|++|++++|.+....+.. ..+++|++|++++|.++
T Consensus        81 L~Ls~n~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           81 LNLSTNQLQS-----------------------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             EECCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             EECCCCcCCc-----------------------cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            5555554443                       33333344444444444444443333221 22444444444444444


Q ss_pred             CCChhhhcCCCCCCEEecCCCcC
Q 042944          301 GTVSEGLGRLSKLEFLDLFGNSL  323 (637)
Q Consensus       301 ~~~~~~l~~l~~L~~L~l~~n~~  323 (637)
                      +..+..+..+++|+.|++++|.+
T Consensus       138 ~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A          138 SVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSCCB
T ss_pred             eeCHHHhccCCCccEEEecCCCe
Confidence            33333344445555555555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=1.5e-16  Score=153.37  Aligned_cols=173  Identities=24%  Similarity=0.311  Sum_probs=123.2

Q ss_pred             cCchhHHHHHHhcccccccceeeeccccchhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhh
Q 042944           53 PINSFILKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAY  132 (637)
Q Consensus        53 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~  132 (637)
                      +...+..+..++++.+.......        +..+++|++|++++|.+.++     +.+..+++|++|++++|.+++..+
T Consensus        14 pd~~l~~l~~l~l~~~~i~~~~~--------~~~l~~L~~L~l~~n~i~~l-----~~l~~l~~L~~L~L~~N~i~~~~~   80 (263)
T 1xeu_A           14 PDPGLANAVKQNLGKQSVTDLVS--------QKELSGVQNFNGDNSNIQSL-----AGMQFFTNLKELHLSHNQISDLSP   80 (263)
T ss_dssp             CSHHHHHHHHHHHTCSCTTSEEC--------HHHHTTCSEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG
T ss_pred             CCHHHHHHHHHHhcCCCcccccc--------hhhcCcCcEEECcCCCcccc-----hHHhhCCCCCEEECCCCccCCChh
Confidence            44456667777777776654432        56778888888888888765     346667888888888888876554


Q ss_pred             hHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcc
Q 042944          133 HWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLS  212 (637)
Q Consensus       133 ~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~  212 (637)
                        +..+ ++|++|++++|.++ .++.  +.. ++|++|++++|+++.++ .+.++++|++|++++|.+++. + .+..++
T Consensus        81 --l~~l-~~L~~L~L~~N~l~-~l~~--~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~  150 (263)
T 1xeu_A           81 --LKDL-TKLEELSVNRNRLK-NLNG--IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLS  150 (263)
T ss_dssp             --GTTC-SSCCEEECCSSCCS-CCTT--CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCT
T ss_pred             --hccC-CCCCEEECCCCccC-CcCc--ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHccCC
Confidence              5555 88888888888887 6665  334 78888888888888874 477888888888888887643 2 566666


Q ss_pred             cCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCC
Q 042944          213 GCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDG  254 (637)
Q Consensus       213 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~  254 (637)
                           +|+.|++++|.+... ..+..+++|+.|++++|.+..
T Consensus       151 -----~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          151 -----KLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             -----TCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred             -----CCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence                 777777777777644 556666666666666666653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=1.8e-16  Score=148.36  Aligned_cols=153  Identities=16%  Similarity=0.202  Sum_probs=128.2

Q ss_pred             cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCC
Q 042944          457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNE  536 (637)
Q Consensus       457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~  536 (637)
                      +.++++++.++..+..+.    ++++.|++++|.++...+..|..+++|+.|++++|.+++        ..|..+..+++
T Consensus        14 ~~v~c~~~~l~~iP~~l~----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~--------~~~~~~~~l~~   81 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE--------LAPDAFQGLRS   81 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--------ECTTTTTTCSS
T ss_pred             CEEEcCCCCcCcCCCccC----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--------cCHHHhhCCcC
Confidence            578888888876544332    788999999999987777788899999999999999872        33667888899


Q ss_pred             CcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccC
Q 042944          537 LKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASS  616 (637)
Q Consensus       537 L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~  616 (637)
                      |++|++++|.++ .+|...+..+++|+.|+|++|++++..|..|..+++|+.|++++|.+++..+..|..+++|++|+++
T Consensus        82 L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B           82 LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA  160 (220)
T ss_dssp             CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence            999999999998 7787776678999999999999987778888899999999999999997777788999999999999


Q ss_pred             CCeeEE
Q 042944          617 NSTITH  622 (637)
Q Consensus       617 ~n~l~~  622 (637)
                      +|++..
T Consensus       161 ~N~~~c  166 (220)
T 2v9t_B          161 QNPFIC  166 (220)
T ss_dssp             SSCEEC
T ss_pred             CCCcCC
Confidence            998853

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=2.6e-19  Score=191.24  Aligned_cols=204  Identities=17%  Similarity=0.196  Sum_probs=154.4

Q ss_pred             cCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCc-------------CCCcccccccCCCCCCeEe-CCCCcCc
Q 042944          381 QSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNH-------------LEGTVLDLSLNYAGYPGID-LSSNDFE  446 (637)
Q Consensus       381 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~-------------i~~~~~~~~~~~~~L~~L~-l~~n~~~  446 (637)
                      ..+++|+.|++++|.+. ..|..+..+ ++|++|++++|.             ..+..+..+..+++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESC-KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHH-HHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            44666666677666665 345555443 566666665553             3445556666677777776 5555432


Q ss_pred             CCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCcccccccc
Q 042944          447 GPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGE  526 (637)
Q Consensus       447 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  526 (637)
                              +|+.+.+++|.++...+       ..|+.|++++|.+++ +|. +..+++|+.|++++|.++         .
T Consensus       424 --------~L~~l~l~~n~i~~l~~-------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~---------~  477 (567)
T 1dce_A          424 --------DLRSKFLLENSVLKMEY-------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR---------A  477 (567)
T ss_dssp             --------HHHHHHHHHHHHHHHHH-------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC---------C
T ss_pred             --------hhhhhhhhcccccccCc-------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc---------c
Confidence                    56666777776654322       468999999999985 666 999999999999999998         7


Q ss_pred             CCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccC-CccccCCCCCcEeeCCCCcccccccc---
Q 042944          527 IPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSI-PRNLCRLSKIQLLDFSLNSISGAIPK---  602 (637)
Q Consensus       527 ~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~ls~n~l~~~~p~---  602 (637)
                      +|..+..+++|++|++++|.++ .+| .+. .+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|.   
T Consensus       478 lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~  554 (567)
T 1dce_A          478 LPPALAALRCLEVLQASDNALE-NVD-GVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER  554 (567)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCC-CCG-GGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred             cchhhhcCCCCCEEECCCCCCC-CCc-ccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence            8889999999999999999998 577 566 6999999999999999665 89999999999999999999966543   


Q ss_pred             cccccccceeecc
Q 042944          603 CINNLTAMVEKAS  615 (637)
Q Consensus       603 ~l~~l~~L~~l~l  615 (637)
                      .+..+++|+.|++
T Consensus       555 l~~~lp~L~~L~l  567 (567)
T 1dce_A          555 LAEMLPSVSSILT  567 (567)
T ss_dssp             HHHHCTTCSEEEC
T ss_pred             HHHHCcccCccCC
Confidence            2345888888864

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=5e-16  Score=146.45  Aligned_cols=151  Identities=18%  Similarity=0.288  Sum_probs=100.8

Q ss_pred             ccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccCC
Q 042944          456 VTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKKC  534 (637)
Q Consensus       456 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~l  534 (637)
                      .+.++.++++++..+..+.    ++|++|++++|.+++..+..|..+++|+.|++++|.+.         .+|. .+..+
T Consensus        21 ~~~v~c~~~~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~---------~i~~~~~~~l   87 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP----TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG---------ALPVGVFDSL   87 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTC
T ss_pred             CCEeEccCCCcCccCCCCC----CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC---------CcChhhcccC
Confidence            4566676666654443322    66777777777777666666777777777777777765         3433 34667


Q ss_pred             CCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeec
Q 042944          535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKA  614 (637)
Q Consensus       535 ~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~  614 (637)
                      ++|++|++++|.++ .++...+..+++|++|+|++|+++ .+|..+..+++|+.|++++|.+.+..+..|..+++|+.|+
T Consensus        88 ~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           88 TQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence            77777777777776 555554445777777777777776 6666677777777777777777755555677777777777


Q ss_pred             cCCCeeE
Q 042944          615 SSNSTIT  621 (637)
Q Consensus       615 l~~n~l~  621 (637)
                      +++|++.
T Consensus       166 l~~N~~~  172 (229)
T 3e6j_A          166 LFGNPWD  172 (229)
T ss_dssp             CTTSCBC
T ss_pred             eeCCCcc
Confidence            7777664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.9e-16  Score=145.77  Aligned_cols=152  Identities=18%  Similarity=0.254  Sum_probs=90.8

Q ss_pred             cCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCC
Q 042944           85 TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNM  164 (637)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l  164 (637)
                      ..+++|++|++++|.+.++     +.+..+++|++|++++|.+....  .+..+ ++|++|++++|.+++..+. .+..+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l-----~~l~~l~~L~~L~l~~n~~~~~~--~l~~l-~~L~~L~l~~n~l~~~~~~-~l~~l  111 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDL-----TGIEYAHNIKDLTINNIHATNYN--PISGL-SNLERLRIMGKDVTSDKIP-NLSGL  111 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCC-----TTGGGCTTCSEEEEESCCCSCCG--GGTTC-TTCCEEEEECTTCBGGGSC-CCTTC
T ss_pred             hhcCCccEEeccCCCccCh-----HHHhcCCCCCEEEccCCCCCcch--hhhcC-CCCCEEEeECCccCcccCh-hhcCC
Confidence            4566777777777777654     23555677777777777655332  34444 6777777777776632333 46666


Q ss_pred             CCCCEEEcCCCcccc-hhhhcCCCCCCcEEEcCCCc-CCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCc
Q 042944          165 TALQHLNLSLNQISA-ISKSFGNMCGLKTLHLFDNN-LTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSL  242 (637)
Q Consensus       165 ~~L~~L~L~~n~l~~-l~~~~~~l~~L~~L~l~~n~-i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L  242 (637)
                      ++|++|++++|+++. .+..+..+++|++|++++|. +. ..+ .+..++     +|+.|++++|.+... +.+..+++|
T Consensus       112 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~-----~L~~L~l~~n~i~~~-~~l~~l~~L  183 (197)
T 4ezg_A          112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLP-----ELKSLNIQFDGVHDY-RGIEDFPKL  183 (197)
T ss_dssp             TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCS-----SCCEEECTTBCCCCC-TTGGGCSSC
T ss_pred             CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCC-----CCCEEECCCCCCcCh-HHhccCCCC
Confidence            777777777776665 45566666677777776665 44 233 455555     666666666666532 245555556


Q ss_pred             cEEEccCCcCC
Q 042944          243 QELHLFDNKLD  253 (637)
Q Consensus       243 ~~L~l~~n~i~  253 (637)
                      ++|++++|.+.
T Consensus       184 ~~L~l~~N~i~  194 (197)
T 4ezg_A          184 NQLYAFSQTIG  194 (197)
T ss_dssp             CEEEECBC---
T ss_pred             CEEEeeCcccC
Confidence            66666555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=2.4e-16  Score=144.97  Aligned_cols=153  Identities=14%  Similarity=0.172  Sum_probs=131.1

Q ss_pred             CCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccc-hhhhcCCCCCC
Q 042944          112 NSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA-ISKSFGNMCGL  190 (637)
Q Consensus       112 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~l~~L  190 (637)
                      +.+++|++|++++|.+....  .+..+ ++|++|++++|.+. .++  .+..+++|++|++++|+++. .+..+.++++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hhcCCccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            44589999999999998533  46666 99999999999886 665  48999999999999999997 67889999999


Q ss_pred             cEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCC-CCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEE
Q 042944          191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK-LTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVIL  269 (637)
Q Consensus       191 ~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L  269 (637)
                      ++|++++|.+.+..+..+..++     +|++|++++|. +.. ++.+..+++|++|++++|.+++..  .+..+++|+.|
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~-----~L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L  186 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLP-----KVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQL  186 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCS-----SCCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEE
T ss_pred             CEEEecCCccCcHhHHHHhhCC-----CCCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEE
Confidence            9999999999987889999988     99999999998 764 457899999999999999998643  78899999999


Q ss_pred             EcCCCCCCC
Q 042944          270 NLDGNQLWG  278 (637)
Q Consensus       270 ~l~~~~~~~  278 (637)
                      ++++|++..
T Consensus       187 ~l~~N~i~~  195 (197)
T 4ezg_A          187 YAFSQTIGG  195 (197)
T ss_dssp             EECBC----
T ss_pred             EeeCcccCC
Confidence            999998753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=9.9e-17  Score=154.59  Aligned_cols=58  Identities=26%  Similarity=0.390  Sum_probs=26.0

Q ss_pred             CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCC
Q 042944          140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLT  201 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~  201 (637)
                      ++|++|++++|.+. .++.  +..+++|++|++++|+++.++. +.++++|++|++++|.+.
T Consensus        41 ~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~   98 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQ-SLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK   98 (263)
T ss_dssp             TTCSEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS
T ss_pred             CcCcEEECcCCCcc-cchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC
Confidence            44444444444444 3332  4444444444444444444433 444444444444444443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.66  E-value=1.7e-16  Score=160.83  Aligned_cols=173  Identities=27%  Similarity=0.332  Sum_probs=115.6

Q ss_pred             cEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHH-hhcCCCcEEECCCCCCCCCCCchhccCCCCCCE
Q 042944           91 RDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLF-KISSNLLALDLNSNQLAGPIPDYAFSNMTALQH  169 (637)
Q Consensus        91 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~-~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~  169 (637)
                      +.++++++.+..++    ..+.  +.+++|+|++|.++...+..+. .+ ++|++|++++|.+. .++..+|.++++|++
T Consensus        21 ~~l~c~~~~l~~iP----~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l-~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~   92 (361)
T 2xot_A           21 NILSCSKQQLPNVP----QSLP--SYTALLDLSHNNLSRLRAEWTPTRL-TNLHSLLLSHNHLN-FISSEAFVPVPNLRY   92 (361)
T ss_dssp             TEEECCSSCCSSCC----SSCC--TTCSEEECCSSCCCEECTTSSSSCC-TTCCEEECCSSCCC-EECTTTTTTCTTCCE
T ss_pred             CEEEeCCCCcCccC----ccCC--CCCCEEECCCCCCCccChhhhhhcc-cccCEEECCCCcCC-ccChhhccCCCCCCE
Confidence            57788888777764    2222  4578888888888766555444 44 88888888888887 666657888888888


Q ss_pred             EEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCc----ccCCCccE
Q 042944          170 LNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDI----TEFSSLQE  244 (637)
Q Consensus       170 L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~----~~~~~L~~  244 (637)
                      |+|++|+++.++. .|.++++|++|++++|.+....+..|..++     +|+.|++++|.+...+...    ..+++|+.
T Consensus        93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-----~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~  167 (361)
T 2xot_A           93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA-----QLQKLYLSQNQISRFPVELIKDGNKLPKLML  167 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----TCCEEECCSSCCCSCCGGGTC----CTTCCE
T ss_pred             EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc-----cCCEEECCCCcCCeeCHHHhcCcccCCcCCE
Confidence            8888888887643 577888888888888888766677777777     7777777777777544433    34556666


Q ss_pred             EEccCCcCCCCCCCcCCCCCC--CcEEEcCCCCC
Q 042944          245 LHLFDNKLDGSFPEKFRKPSP--LVILNLDGNQL  276 (637)
Q Consensus       245 L~l~~n~i~~~~~~~l~~l~~--L~~L~l~~~~~  276 (637)
                      |++++|.++...+..+..++.  ++.|++++|++
T Consensus       168 L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          168 LDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             EECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             EECCCCCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            666666665443344444443  24444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=3.3e-16  Score=140.13  Aligned_cols=134  Identities=18%  Similarity=0.227  Sum_probs=111.1

Q ss_pred             CCccEEeCCCCCCc-ccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh
Q 042944          479 EYFSYLDVSDNLLS-GELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD  557 (637)
Q Consensus       479 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~  557 (637)
                      ++|+.|++++|.++ +.+|..+..+++|+.|++++|.++         .+ ..+..+++|++|++++|.+++.+|..+. 
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~---------~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-   92 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---------SV-SNLPKLPKLKKLELSENRIFGGLDMLAE-   92 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC---------CC-SSCCCCSSCCEEEEESCCCCSCCCHHHH-
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC---------Ch-hhhccCCCCCEEECcCCcCchHHHHHHh-
Confidence            77888888888887 567777888999999999999988         33 5677889999999999999855666554 


Q ss_pred             cCCCCcEEeccCccccccCC--ccccCCCCCcEeeCCCCccccccc---ccccccccceeeccCCCeeEEEE
Q 042944          558 TLPKLAILSLRSNQFHGSIP--RNLCRLSKIQLLDFSLNSISGAIP---KCINNLTAMVEKASSNSTITHIY  624 (637)
Q Consensus       558 ~l~~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~l~l~~n~l~~~~  624 (637)
                      .+++|+.|++++|++++ +|  ..+..+++|+.|++++|++++..+   ..+..+++|++|++++|.+..++
T Consensus        93 ~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             HCTTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             hCCCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            69999999999999984 43  678899999999999999985544   48889999999999999887765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=2.2e-15  Score=137.71  Aligned_cols=132  Identities=20%  Similarity=0.238  Sum_probs=99.0

Q ss_pred             cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCch-hhhccCCCcEEeccCccCCCCccccccccCCccccCCC
Q 042944          457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD-CLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCN  535 (637)
Q Consensus       457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~  535 (637)
                      +++++++++++..+..+.    +++++|++++|.+++..+. .+..+++|+.|++++|.+++        ..|..+..++
T Consensus        11 ~~l~~s~~~l~~ip~~~~----~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~~~~~~l~   78 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP----LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG--------IEPNAFEGAS   78 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC----TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCC--------BCTTTTTTCT
T ss_pred             CEEEcCCCCcCcCccCCC----CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCC--------cCHhHcCCcc
Confidence            678888888865443222    5788888888888765553 47888888888888888873        3356677888


Q ss_pred             CCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccc
Q 042944          536 ELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP  601 (637)
Q Consensus       536 ~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p  601 (637)
                      +|++|++++|.+++..+..+. .+++|++|+|++|++++..|..+..+++|++|++++|++.+..+
T Consensus        79 ~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           79 HIQELQLGENKIKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            888888888888744443344 68888888888888887778888888888888888888876543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1.4e-15  Score=133.05  Aligned_cols=128  Identities=20%  Similarity=0.266  Sum_probs=108.0

Q ss_pred             CCccEEeCCCCCCc-ccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh
Q 042944          479 EYFSYLDVSDNLLS-GELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD  557 (637)
Q Consensus       479 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~  557 (637)
                      ++++.|++++|.++ +.+|..+..+++|+.|++++|.++         .+ ..+..+++|++|++++|.+++.+|..+. 
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~---------~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-   85 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---------SI-ANLPKLNKLKKLELSDNRVSGGLEVLAE-   85 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC---------CC-TTCCCCTTCCEEECCSSCCCSCTHHHHH-
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC---------Cc-hhhhcCCCCCEEECCCCcccchHHHHhh-
Confidence            67888888888887 567788889999999999999988         33 5677899999999999999855666554 


Q ss_pred             cCCCCcEEeccCcccccc-CCccccCCCCCcEeeCCCCccccccc---ccccccccceeeccCC
Q 042944          558 TLPKLAILSLRSNQFHGS-IPRNLCRLSKIQLLDFSLNSISGAIP---KCINNLTAMVEKASSN  617 (637)
Q Consensus       558 ~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~l~l~~  617 (637)
                      .+++|++|++++|++++. .+..+..+++|++|++++|++++..+   ..+..+++|++|++++
T Consensus        86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           86 KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            699999999999999853 34788999999999999999996655   5789999999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=4.8e-15  Score=135.39  Aligned_cols=127  Identities=22%  Similarity=0.243  Sum_probs=80.5

Q ss_pred             cEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCC
Q 042944          457 TSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNE  536 (637)
Q Consensus       457 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~  536 (637)
                      +.+++++++++..+..+.    +++++|++++|.++ .+|..|..+++|+.|++++|.|++        ..+..+..+++
T Consensus        13 ~~l~~~~~~l~~ip~~~~----~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~--------i~~~~f~~l~~   79 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP----RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST--------LSNQSFSNMTQ   79 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC----TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC--------CCTTTTTTCTT
T ss_pred             CEEEcCCCCCCcCCCCCC----CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE--------eCHhHccCCCC
Confidence            466777777664433221    56777777777776 455667777777777777777662        12234666777


Q ss_pred             CcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944          537 LKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS  597 (637)
Q Consensus       537 L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~  597 (637)
                      |++|++++|.++ .++...+..+++|+.|+|++|+++...+..|..+++|+.|++++|++.
T Consensus        80 L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           80 LLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            777777777776 444433335677777777777776444445666777777777777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=6.9e-16  Score=154.38  Aligned_cols=285  Identities=18%  Similarity=0.154  Sum_probs=140.1

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccccccCC-CCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC-
Q 042944           86 SLASLRDLYLASSTLLSINRPSLSSMNS-STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN-  163 (637)
Q Consensus        86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~-l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~-  163 (637)
                      .++++++|.++++ +..   ..+..+.. +++|++|+|++|++......  ....+.++.+.+..+    .+|..+|.+ 
T Consensus        23 ~~~~l~~L~l~g~-i~~---~~~~~l~~~l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~----~I~~~aF~~~   92 (329)
T 3sb4_A           23 EANSITHLTLTGK-LNA---EDFRHLRDEFPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMAN----FVPAYAFSNV   92 (329)
T ss_dssp             HHHHCSEEEEEEE-ECH---HHHHHHHHSCTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTT----EECTTTTEEE
T ss_pred             hhCceeEEEEecc-ccH---HHHHHHHHhhccCeEEecCcceeEEecCc--ccccccccccccccc----ccCHHHhccc
Confidence            3567888888864 221   11344444 68899999999887721111  011122444555544    455667888 


Q ss_pred             -------CCCCCEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCC----CC
Q 042944          164 -------MTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKL----TG  231 (637)
Q Consensus       164 -------l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~----~~  231 (637)
                             +++|++|++.+ .++.++ .+|.+|++|+.+++.+|.+....+.+|..+.     ++..+.......    ..
T Consensus        93 ~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~-----~l~~l~~~~~~~~~~~~~  166 (329)
T 3sb4_A           93 VNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSV-----TAIFIPLGSSDAYRFKNR  166 (329)
T ss_dssp             ETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTT-----CEEEECTTCTHHHHTSTT
T ss_pred             ccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCC-----ceEEecCcchhhhhcccc
Confidence                   89999999988 888875 4688899999999998888767777777655     666666554211    10


Q ss_pred             -CcCCcccCCCcc-EEEccCCcC-CCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCC-CCCCCEEEccCCcCCCCChhhh
Q 042944          232 -SLPDITEFSSLQ-ELHLFDNKL-DGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSV-FPFLTRLDVSDSRLNGTVSEGL  307 (637)
Q Consensus       232 -~~~~~~~~~~L~-~L~l~~n~i-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l  307 (637)
                       ....+..+..|+ .+.+..... .......-....++..+.+.++-.......+.. +++|+.+++++|.++.....+|
T Consensus       167 i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF  246 (329)
T 3sb4_A          167 WEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTF  246 (329)
T ss_dssp             TTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTT
T ss_pred             ccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhh
Confidence             011233333444 232222110 000000000112233333322211000000111 3445555555554444444445


Q ss_pred             cCCCCCCEEecCCCcCCCccchhhhcCCCCCc-EEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCc
Q 042944          308 GRLSKLEFLDLFGNSLEGMITESHVSNLSKLK-YMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNY  386 (637)
Q Consensus       308 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L  386 (637)
                      .++++|+.+++.+| +.. ++...|.++++|+ .+++.. .++.....+|..+.+|+.+++.++.+....+..|.++++|
T Consensus       247 ~~~~~L~~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L  323 (329)
T 3sb4_A          247 AQKKYLLKIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS  323 (329)
T ss_dssp             TTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred             hCCCCCCEEECCcc-cce-ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence            55555555555544 322 3333455555555 555544 4443444444444444444444444443333344444444


Q ss_pred             cEE
Q 042944          387 YFL  389 (637)
Q Consensus       387 ~~L  389 (637)
                      +.+
T Consensus       324 ~~l  326 (329)
T 3sb4_A          324 KLI  326 (329)
T ss_dssp             CEE
T ss_pred             hhh
Confidence            443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=2e-17  Score=176.64  Aligned_cols=195  Identities=19%  Similarity=0.159  Sum_probs=109.4

Q ss_pred             CCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCC-------------CCCCCCchhccCCCCCCEEE-cCCCcc
Q 042944          112 NSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQ-------------LAGPIPDYAFSNMTALQHLN-LSLNQI  177 (637)
Q Consensus       112 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~-------------l~~~l~~~~~~~l~~L~~L~-L~~n~l  177 (637)
                      ..+++|+.|+|++|.++ ..|..+..+ ++|+.|++++|.             ..+.+|. .+..+++|+.|+ ++.|.+
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l-~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESC-KELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHHHHHHHCGGGHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHH-HHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHHhcccCcchhhccc
Confidence            34455555555555554 344445444 555555554432             2222222 455555566655 444433


Q ss_pred             cchhh------hcCC--CCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccC
Q 042944          178 SAISK------SFGN--MCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFD  249 (637)
Q Consensus       178 ~~l~~------~~~~--l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~  249 (637)
                      ..++.      .+..  ...|++|++++|.+++ +|. +..++     +|+.|++++|.++..+..+..+++|+.|++++
T Consensus       423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~-----~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~  495 (567)
T 1dce_A          423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLL-----LVTHLDLSHNRLRALPPALAALRCLEVLQASD  495 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGT-----TCCEEECCSSCCCCCCGGGGGCTTCCEEECCS
T ss_pred             chhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccc-----cCcEeecCcccccccchhhhcCCCCCEEECCC
Confidence            33221      0110  1246677777776664 344 66666     77777777777765555666677777777777


Q ss_pred             CcCCCCCCCcCCCCCCCcEEEcCCCCCCCC--CCCCCCCCCCCEEEccCCcCCCCChh---hhcCCCCCCEEec
Q 042944          250 NKLDGSFPEKFRKPSPLVILNLDGNQLWGS--LPDLSVFPFLTRLDVSDSRLNGTVSE---GLGRLSKLEFLDL  318 (637)
Q Consensus       250 n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~l  318 (637)
                      |.+++ .| .+..+++|+.|++++|.+.+.  +..+..+++|+.|++++|.+++..+.   .+..+|+|+.|++
T Consensus       496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            77764 33 566677777777777777665  33445577777777777776654321   2334677777653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=4.3e-15  Score=148.56  Aligned_cols=215  Identities=13%  Similarity=0.053  Sum_probs=128.7

Q ss_pred             CCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcC-------cCCCCCCCCC
Q 042944          383 QKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDF-------EGPVPPVPGN  455 (637)
Q Consensus       383 ~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~-------~~~~~~~~~~  455 (637)
                      +++|+.|++.+ .+.......|.. +++|+++++.+|.+....+..|..+..+..+.......       ..........
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~-~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKG-CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTT-CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhc-CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            55555555555 444433333333 25566666666555555555555554444444333211       0000111223


Q ss_pred             cc-EEEcccccccCccccccc---ccCCCccEEeCCCCCCcccCchhh-hccCCCcEEeccCccCCCCccccccccCCc-
Q 042944          456 VT-SLNLSNNKFSGPISSLCS---ISGEYFSYLDVSDNLLSGELPDCL-LRWQALAVLNLANNNFSGNFLTFFVGEIPP-  529 (637)
Q Consensus       456 L~-~L~L~~n~l~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-  529 (637)
                      |+ .+.+.....   .+...+   ....+++.+.+.++-.. .....+ ..+++|+.|++++|+++         .+|. 
T Consensus       178 L~~~i~~~~~~~---l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~---------~I~~~  244 (329)
T 3sb4_A          178 LETTIQVGAMGK---LEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT---------TIPDF  244 (329)
T ss_dssp             CEEEEEECTTCC---HHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC---------EECTT
T ss_pred             cceeEEecCCCc---HHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc---------eecHh
Confidence            33 232322111   111000   01145556665544222 222222 23789999999998887         5555 


Q ss_pred             cccCCCCCcEEEcCCCcccccCChhhhhcCCCCc-EEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccc
Q 042944          530 SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLA-ILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLT  608 (637)
Q Consensus       530 ~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~-~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~  608 (637)
                      .+.+|++|+.+++.+| ++ .++...|.++++|+ .+++.+ .++..-+..|..+++|+.+++++|.++..-+..|..++
T Consensus       245 aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~  321 (329)
T 3sb4_A          245 TFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV  321 (329)
T ss_dssp             TTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred             hhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc
Confidence            4788899999999988 66 78887777899998 999988 66655668889999999999999999877777899999


Q ss_pred             cceeecc
Q 042944          609 AMVEKAS  615 (637)
Q Consensus       609 ~L~~l~l  615 (637)
                      +|+.++.
T Consensus       322 ~L~~ly~  328 (329)
T 3sb4_A          322 PSKLIYK  328 (329)
T ss_dssp             CCCEEEC
T ss_pred             chhhhcc
Confidence            9988763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=1.4e-13  Score=140.39  Aligned_cols=262  Identities=13%  Similarity=0.128  Sum_probs=127.3

Q ss_pred             CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCc
Q 042944          140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNS  218 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~  218 (637)
                      ..++.+.+.. .++ .|+..+|.++ +|+.+.+..+ ++.++ .+|.++ +|+.+.+.+ .+......+|..+.     +
T Consensus       113 ~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~-----~  181 (401)
T 4fdw_A          113 KGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY-----N  181 (401)
T ss_dssp             SSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCT-----T
T ss_pred             CCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcc-----c
Confidence            4444444443 233 4444445443 4555555443 44432 234342 455555543 33333444454444     5


Q ss_pred             ccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCc
Q 042944          219 LEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSR  298 (637)
Q Consensus       219 L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  298 (637)
                      |+.++++.|.+...........+|+.+.+..+ +......+|.++++|+.+++..+ +..+....+...+|+.+.+. +.
T Consensus       182 L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~  258 (401)
T 4fdw_A          182 LKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NG  258 (401)
T ss_dssp             CCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TT
T ss_pred             CCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CC
Confidence            55555555554443333333455555555533 44445556666666666666553 33333333333556666663 33


Q ss_pred             CCCCChhhhcCCCCCCEEecCCCcCC----CccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCC
Q 042944          299 LNGTVSEGLGRLSKLEFLDLFGNSLE----GMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGP  374 (637)
Q Consensus       299 ~~~~~~~~l~~l~~L~~L~l~~n~~~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~  374 (637)
                      ++.....+|.+|++|+.+.+.++.+.    ..++...|.+|++|+.+++. +.+......+|..+.+|+.+.+..+ +..
T Consensus       259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ  336 (401)
T ss_dssp             CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred             ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence            44444555666666666666665443    11334456666666666666 3355455555555555555555332 332


Q ss_pred             CccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCC
Q 042944          375 HFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSH  418 (637)
Q Consensus       375 ~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~  418 (637)
                      .....|.++ +|+.+++.+|.........+.+...+++.+.+..
T Consensus       337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence            333445555 5555555555444333333333323344444433

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=8.3e-15  Score=130.96  Aligned_cols=131  Identities=23%  Similarity=0.283  Sum_probs=68.0

Q ss_pred             CCCcEEECCCCCCC-CCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCc
Q 042944          140 SNLLALDLNSNQLA-GPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNS  218 (637)
Q Consensus       140 ~~L~~L~L~~n~l~-~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~  218 (637)
                      ++|++|++++|.+. +.+|. .+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..|..+..++     +
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----~   96 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP-----N   96 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-----T
T ss_pred             ccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC-----C
Confidence            44555555555543 34444 344555555555555555555 4455555555555555555544445554455     5


Q ss_pred             ccEEEcCCCCCCCCc--CCcccCCCccEEEccCCcCCCCCC---CcCCCCCCCcEEEcCCCCCC
Q 042944          219 LEILKLGGNKLTGSL--PDITEFSSLQELHLFDNKLDGSFP---EKFRKPSPLVILNLDGNQLW  277 (637)
Q Consensus       219 L~~L~l~~n~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~~~~~~  277 (637)
                      |++|++++|.+....  ..+..+++|++|++++|.+++..+   ..+..+++|+.|++++|.+.
T Consensus        97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            555555555555432  344555555555555555554333   24555555555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=2.2e-14  Score=131.07  Aligned_cols=172  Identities=18%  Similarity=0.161  Sum_probs=123.4

Q ss_pred             CeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccC
Q 042944          436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF  515 (637)
Q Consensus       436 ~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  515 (637)
                      +.++++++.++.+....+.++++|++++|++++..+...+...++|++|++++|.+++..|..|..+++|++|++++|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence            78999999987666556779999999999998776653334448999999999999988889999999999999999998


Q ss_pred             CCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCc
Q 042944          516 SGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNS  595 (637)
Q Consensus       516 ~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~  595 (637)
                      ++        ..+..+..+++|++|++++|.+++..|..+. .+++|+.|+|++|++....+.. .-...++...+..+.
T Consensus        91 ~~--------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~c~c~l~-~~~~~l~~~~~~~~~  160 (192)
T 1w8a_A           91 KE--------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGA  160 (192)
T ss_dssp             CE--------ECSSSSTTCTTCCEEECCSSCCCEECTTSST-TCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGG
T ss_pred             Cc--------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhh-cCCCCCEEEeCCCCccCcCcch-HHHHHHHHcCCCCCC
Confidence            83        2344577889999999999999866666665 6899999999999988543311 001123333444444


Q ss_pred             ccccccccccccccceeeccCCCee
Q 042944          596 ISGAIPKCINNLTAMVEKASSNSTI  620 (637)
Q Consensus       596 l~~~~p~~l~~l~~L~~l~l~~n~l  620 (637)
                      .....|..+.   .....++..+.+
T Consensus       161 ~~C~~P~~l~---~~~l~~l~~~~~  182 (192)
T 1w8a_A          161 ARCGAPSKVR---DVQIKDLPHSEF  182 (192)
T ss_dssp             CBBCSSTTTT---TSBGGGSCTTTC
T ss_pred             CCCCCChHHc---CCChhhCcHhhc
Confidence            4444454443   333334444443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=1.1e-15  Score=168.63  Aligned_cols=178  Identities=17%  Similarity=0.179  Sum_probs=94.3

Q ss_pred             ccccccCCCCCCeEeCCCCcCcCCCCCC--CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhcc
Q 042944          425 VLDLSLNYAGYPGIDLSSNDFEGPVPPV--PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRW  502 (637)
Q Consensus       425 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l  502 (637)
                      .+..+..++.|+.|++++|.+..+.+..  +++|++|+|++|.++.....+.  .+++|++|+|++|.++ .+|..|..+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~N~l~-~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIK--NLSNLRVLDLSHNRLT-SLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGG--GGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhh--CCCCCCEEeCcCCcCC-ccChhhcCC
Confidence            3444555666666666666655332221  4566677777776663322222  2278888888888888 668888888


Q ss_pred             CCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccC
Q 042944          503 QALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCR  582 (637)
Q Consensus       503 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~  582 (637)
                      ++|+.|+|++|.|+         .+|..+..+++|++|++++|.+++.+|..+......+..++|++|.+++.+|.    
T Consensus       293 ~~L~~L~L~~N~l~---------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~----  359 (727)
T 4b8c_D          293 FQLKYFYFFDNMVT---------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH----  359 (727)
T ss_dssp             TTCSEEECCSSCCC---------CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC----
T ss_pred             CCCCEEECCCCCCC---------ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc----
Confidence            88888888888887         67777888888888888888888666666553112233467888888766664    


Q ss_pred             CCCCcEeeCCCC--------cccccccccccccccceeeccCCCee
Q 042944          583 LSKIQLLDFSLN--------SISGAIPKCINNLTAMVEKASSNSTI  620 (637)
Q Consensus       583 l~~L~~L~ls~n--------~l~~~~p~~l~~l~~L~~l~l~~n~l  620 (637)
                        .|+.|++++|        .+.+..+..+.++..+....++.|.+
T Consensus       360 --~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil  403 (727)
T 4b8c_D          360 --ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL  403 (727)
T ss_dssp             --C-----------------------------------------CC
T ss_pred             --ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence              4456667666        33333344445555566666666654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.55  E-value=6.1e-16  Score=170.61  Aligned_cols=187  Identities=21%  Similarity=0.189  Sum_probs=91.9

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCc---------hhhhHHHhhcCCCcEEECCCCCCCCCCCc
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSN---------SAYHWLFKISSNLLALDLNSNQLAGPIPD  158 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~---------~~~~~~~~~~~~L~~L~L~~n~l~~~l~~  158 (637)
                      ++++.|+|.++.+....    ..+     |+.++|+.+.+..         ..+..+..+ ++|++|+|++|.+. .++.
T Consensus       173 ~~~~~l~L~~n~~~~~~----~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l-~~L~~L~Ls~n~l~-~l~~  241 (727)
T 4b8c_D          173 PLTPKIELFANGKDEAN----QAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDD-QLWHALDLSNLQIF-NISA  241 (727)
T ss_dssp             ----------------------------------------------------------CC-CCCCEEECTTSCCS-CCCG
T ss_pred             CccceEEeeCCCCCcch----hhH-----hhcCccCcccccCccccccceecChhhhccC-CCCcEEECCCCCCC-CCCh
Confidence            55777777777666542    212     2333333333221         223334444 77777777777776 6766


Q ss_pred             hhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCccc
Q 042944          159 YAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITE  238 (637)
Q Consensus       159 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~  238 (637)
                       .+.++++|++|+|++|.++.+|..|.++++|++|++++|.++ .+|..+..+.     +|++|++++|.+...+..+..
T Consensus       242 -~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-----~L~~L~L~~N~l~~lp~~~~~  314 (727)
T 4b8c_D          242 -NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF-----QLKYFYFFDNMVTTLPWEFGN  314 (727)
T ss_dssp             -GGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT-----TCSEEECCSSCCCCCCSSTTS
T ss_pred             -hhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC-----CCCEEECCCCCCCccChhhhc
Confidence             344677777777777777777777777777777777777777 5576777776     777777777777766556777


Q ss_pred             CCCccEEEccCCcCCCCCCCcCCCCC-CCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCC
Q 042944          239 FSSLQELHLFDNKLDGSFPEKFRKPS-PLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDS  297 (637)
Q Consensus       239 ~~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n  297 (637)
                      +++|++|+|++|.+++..+..+..+. .+..+++++|.+....+     ..|+.|+++.|
T Consensus       315 l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-----~~l~~l~l~~n  369 (727)
T 4b8c_D          315 LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-----HERRFIEINTD  369 (727)
T ss_dssp             CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CC---------
T ss_pred             CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-----cccceeEeecc
Confidence            77777777777777665555443321 11235566666643332     34556666555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=1.2e-14  Score=130.81  Aligned_cols=128  Identities=15%  Similarity=0.197  Sum_probs=85.5

Q ss_pred             CCccEEeCCCCCCcccCchhhhcc-CCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhh
Q 042944          479 EYFSYLDVSDNLLSGELPDCLLRW-QALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD  557 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~  557 (637)
                      ++|+.|++++|.++. ++. +..+ ++|+.|++++|.++         .+ ..+..+++|++|++++|.++ .+|..++.
T Consensus        19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~---------~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~   85 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIR---------KL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQ   85 (176)
T ss_dssp             TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCC---------EE-CCCCCCSSCCEEECCSSCCC-EECSCHHH
T ss_pred             CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCC---------cc-cccccCCCCCEEECCCCccc-ccCcchhh
Confidence            566777777776663 333 3333 37777777777776         23 34666777777777777776 55555544


Q ss_pred             cCCCCcEEeccCccccccCCc--cccCCCCCcEeeCCCCccccccccc----ccccccceeeccCCCeeE
Q 042944          558 TLPKLAILSLRSNQFHGSIPR--NLCRLSKIQLLDFSLNSISGAIPKC----INNLTAMVEKASSNSTIT  621 (637)
Q Consensus       558 ~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~ls~n~l~~~~p~~----l~~l~~L~~l~l~~n~l~  621 (637)
                      .+++|+.|++++|++. .+|.  .+..+++|+.|++++|++. .+|..    +..+++|+.|++++|.+.
T Consensus        86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            5777777777777775 4554  6677777777777777776 44553    777777777777777653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.54  E-value=3.1e-13  Score=137.93  Aligned_cols=270  Identities=15%  Similarity=0.132  Sum_probs=147.0

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCC
Q 042944           86 SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMT  165 (637)
Q Consensus        86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~  165 (637)
                      .+..++.+.+.. .++.+..   .+|.++ +|+.+.+..+ ++.....+|..  .+|+.+.+.. .+. .++..+|.+++
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~---~aF~~~-~L~~i~l~~~-i~~I~~~aF~~--~~L~~i~lp~-~l~-~I~~~aF~~c~  180 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPK---DAFRNS-QIAKVVLNEG-LKSIGDMAFFN--STVQEIVFPS-TLE-QLKEDIFYYCY  180 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECT---TTTTTC-CCSEEECCTT-CCEECTTTTTT--CCCCEEECCT-TCC-EECSSTTTTCT
T ss_pred             ecCCccEEEECC-ccCEehH---hhcccC-CccEEEeCCC-ccEECHHhcCC--CCceEEEeCC-Ccc-EehHHHhhCcc
Confidence            345566666654 2444443   223333 5666666555 44444443433  3566666664 454 56655666666


Q ss_pred             CCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEE
Q 042944          166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQEL  245 (637)
Q Consensus       166 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  245 (637)
                      +|+.+++++|+++.++...-.+.+|+.+.+..+ +......+|..+.     +|+.+.+..+ +...........+|+.+
T Consensus       181 ~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~-----~L~~l~l~~~-l~~I~~~aF~~~~L~~i  253 (401)
T 4fdw_A          181 NLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTS-----QLKTIEIPEN-VSTIGQEAFRESGITTV  253 (401)
T ss_dssp             TCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCT-----TCCCEECCTT-CCEECTTTTTTCCCSEE
T ss_pred             cCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCC-----CCCEEecCCC-ccCccccccccCCccEE
Confidence            666666666666666543223566666666543 4444555666555     6666666553 22222222222455555


Q ss_pred             EccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCC
Q 042944          246 HLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG  325 (637)
Q Consensus       246 ~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~  325 (637)
                      .+. +.++.....+|.++++|+.+.+.++.+.                  .+........+|.+|++|+.+.+.. .+..
T Consensus       254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~------------------~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~  313 (401)
T 4fdw_A          254 KLP-NGVTNIASRAFYYCPELAEVTTYGSTFN------------------DDPEAMIHPYCLEGCPKLARFEIPE-SIRI  313 (401)
T ss_dssp             EEE-TTCCEECTTTTTTCTTCCEEEEESSCCC------------------CCTTCEECTTTTTTCTTCCEECCCT-TCCE
T ss_pred             EeC-CCccEEChhHhhCCCCCCEEEeCCcccc------------------CCcccEECHHHhhCCccCCeEEeCC-ceEE
Confidence            552 2233344445555555555555444332                  0001123445566677777777763 3433


Q ss_pred             ccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCC-CccEEEeeCCC
Q 042944          326 MITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQK-NYYFLDISDTE  395 (637)
Q Consensus       326 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~  395 (637)
                       +....|.+|++|+.+++..+ +......+|..+ +|+.+.+.++.........+..++ ++..|++..+.
T Consensus       314 -I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          314 -LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             -ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             -EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence             44446777777777777543 555556666666 777777777766555555666663 67777776654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.8e-14  Score=125.85  Aligned_cols=126  Identities=23%  Similarity=0.317  Sum_probs=70.9

Q ss_pred             CCCcEEECCCCCCC-CCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCc
Q 042944          140 SNLLALDLNSNQLA-GPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNS  218 (637)
Q Consensus       140 ~~L~~L~L~~n~l~-~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~  218 (637)
                      ++|++|++++|.+. +.+|. .+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.+..|..+..++     +
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-----~   89 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP-----N   89 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-----T
T ss_pred             ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC-----C
Confidence            45566666666554 34544 455566666666666666555 4555666666666666666544555555555     6


Q ss_pred             ccEEEcCCCCCCCCc--CCcccCCCccEEEccCCcCCCCCC---CcCCCCCCCcEEEcC
Q 042944          219 LEILKLGGNKLTGSL--PDITEFSSLQELHLFDNKLDGSFP---EKFRKPSPLVILNLD  272 (637)
Q Consensus       219 L~~L~l~~n~~~~~~--~~~~~~~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~l~  272 (637)
                      |++|++++|.+....  ..+..+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            666666666655422  345555566666666666554433   345555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=1.4e-13  Score=125.66  Aligned_cols=127  Identities=20%  Similarity=0.229  Sum_probs=71.2

Q ss_pred             CeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccC
Q 042944          436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF  515 (637)
Q Consensus       436 ~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  515 (637)
                      +.++++++.++.+....++++++|++++|+++....  .+...++|+.|++++|.+++..+..|.++++|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~--~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPK--ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCG--GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHH--HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            455666666554444445566666666666653331  122225666666666666655555666666666666666666


Q ss_pred             CCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccc
Q 042944          516 SGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFH  573 (637)
Q Consensus       516 ~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~  573 (637)
                      +.        ..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|++.
T Consensus        91 ~~--------i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RC--------IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CB--------CCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CE--------eCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence            52        11234555666666666666665 455444445666666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=9.5e-14  Score=125.19  Aligned_cols=132  Identities=20%  Similarity=0.273  Sum_probs=100.0

Q ss_pred             ccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccCC
Q 042944          456 VTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKKC  534 (637)
Q Consensus       456 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~l  534 (637)
                      .+.+++++++++.......    ++++.|++++|.+++..+..+..+++|++|++++|.++         .++. .+..+
T Consensus         9 ~~~l~~~~~~l~~~p~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l   75 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP----SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ---------SLPDGVFDKL   75 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------CCCTTTTTTC
T ss_pred             CCEEEecCCCCccCCCCCC----CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce---------EeChhHccCC
Confidence            5678888888775543222    78888899888888666667788888889998888887         3443 35778


Q ss_pred             CCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccc
Q 042944          535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP  601 (637)
Q Consensus       535 ~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p  601 (637)
                      ++|++|++++|.++ .++...+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus        76 ~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           76 TKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88888888888887 5555554468888888888888885555556778888888888888876544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.51  E-value=3.4e-13  Score=138.36  Aligned_cols=311  Identities=14%  Similarity=0.072  Sum_probs=130.1

Q ss_pred             chhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchh
Q 042944           81 IVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYA  160 (637)
Q Consensus        81 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~  160 (637)
                      -.+|..+++|+.+.|..+ ++.+..   .+|.+|++|+.+++..+ ++.....++..+ .+|+.+.+..+ +. .++..+
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I~~---~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c-~~L~~i~~p~~-l~-~i~~~a  135 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREIGE---FAFENCSKLEIINIPDS-VKMIGRCTFSGC-YALKSILLPLM-LK-SIGVEA  135 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEECT---TTTTTCTTCCEECCCTT-CCEECTTTTTTC-TTCCCCCCCTT-CC-EECTTT
T ss_pred             HHHhhCCCCceEEEeCCC-ccCcch---hHhhCCCCCcEEEeCCC-ceEccchhhccc-ccchhhcccCc-ee-eeccee
Confidence            345556666666666532 444433   34445566666666543 333333333333 55555554432 32 344444


Q ss_pred             ccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccC
Q 042944          161 FSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEF  239 (637)
Q Consensus       161 ~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~  239 (637)
                      |.++..++......  +..+ ..+|.++++|+.+.+.++. ......+|..+.     +|+.+.+..+            
T Consensus       136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~-----~L~~i~l~~~------------  195 (394)
T 4fs7_A          136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCG-----KLKSIKLPRN------------  195 (394)
T ss_dssp             TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCT-----TCCBCCCCTT------------
T ss_pred             eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCC-----CceEEEcCCC------------
Confidence            54443322222111  1111 2345555555555554432 213334444444     4554444433            


Q ss_pred             CCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecC
Q 042944          240 SSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLF  319 (637)
Q Consensus       240 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  319 (637)
                                  ++.....+|.++..|+.+.+..+... ..........|+.+.+.... +.....++..+..++.+.+.
T Consensus       196 ------------~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~  261 (394)
T 4fs7_A          196 ------------LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQ  261 (394)
T ss_dssp             ------------CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEEC
T ss_pred             ------------ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCCc-eecccccccccccceeEEcC
Confidence                        22222333444444444443333221 11222223344444443221 11222334444444444444


Q ss_pred             CCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCc
Q 042944          320 GNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDA  399 (637)
Q Consensus       320 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~  399 (637)
                      .+...  +....+.++..++.+......+   ....+..+.+|+.+.+.++ +.......|.+|.+|+.+++.++ +...
T Consensus       262 ~~~~~--i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I  334 (394)
T 4fs7_A          262 NNKLR--IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEI  334 (394)
T ss_dssp             CTTCE--ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred             CCcce--eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEE
Confidence            33221  2222344444444444433322   1223344444444444332 22222334455555555555432 3333


Q ss_pred             cchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCC
Q 042944          400 VPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSS  442 (637)
Q Consensus       400 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~  442 (637)
                      ....|.. +.+|+.+++..+ ++.....+|.+|.+|+.+++..
T Consensus       335 ~~~aF~~-c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          335 GKRSFRG-CTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CTTTTTT-CTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             hHHhccC-CCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            3333333 255555555444 4444455555666666665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.51  E-value=3.1e-13  Score=138.61  Aligned_cols=307  Identities=12%  Similarity=0.017  Sum_probs=190.6

Q ss_pred             cccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccch-hhhcCCC
Q 042944          109 SSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNM  187 (637)
Q Consensus       109 ~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l  187 (637)
                      .+|.+|.+|+++.+..+ ++.....+|..+ ++|+.+++..+ ++ .++..+|.++.+|+.+.+..+ +..+ ..+|.++
T Consensus        65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c-~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~  139 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST-VREIGEFAFENC-SKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC  139 (394)
T ss_dssp             TTTTTCTTEEEEECCTT-CCEECTTTTTTC-TTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred             HHhhCCCCceEEEeCCC-ccCcchhHhhCC-CCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceeeecc
Confidence            34555566666666533 444444444444 66666666543 44 555555666666665554432 2222 2233333


Q ss_pred             CCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCc
Q 042944          188 CGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLV  267 (637)
Q Consensus       188 ~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~  267 (637)
                      ..++........  ...                            ...+..+++|+.+.+.++. ......+|.++.+|+
T Consensus       140 ~~~~~~~~~~~~--~i~----------------------------~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~  188 (394)
T 4fs7_A          140 DFKEITIPEGVT--VIG----------------------------DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLK  188 (394)
T ss_dssp             CCSEEECCTTCC--EEC----------------------------TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCC
T ss_pred             cccccccCcccc--ccc----------------------------hhhhcccCCCcEEecCCcc-ceeccccccCCCCce
Confidence            322222111110  011                            2235556667777765543 235567788899999


Q ss_pred             EEEcCCCCCCCCCCC-CCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCC
Q 042944          268 ILNLDGNQLWGSLPD-LSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFN  346 (637)
Q Consensus       268 ~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  346 (637)
                      .+.+..+ +...... +..+..|+.+.+..+... . ........+|+.+.+.... . .+....+.++..++.+.+..+
T Consensus       189 ~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          189 SIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-L-GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNN  263 (394)
T ss_dssp             BCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-E-CTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCT
T ss_pred             EEEcCCC-ceEeCchhhccccccceeecCCCceE-e-ehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCC
Confidence            9998776 3333333 444888888887766433 1 2233455789999886543 2 244457889999999999876


Q ss_pred             cccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCccc
Q 042944          347 SLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVL  426 (637)
Q Consensus       347 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~  426 (637)
                      .. ......+..+..++.+......+.   ...+..+.+|+.+.+.++ +.......+.. +++|+.++|.++ ++....
T Consensus       264 ~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~-c~~L~~i~lp~~-v~~I~~  336 (394)
T 4fs7_A          264 KL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFES-CTSLVSIDLPYL-VEEIGK  336 (394)
T ss_dssp             TC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTT-CTTCCEECCCTT-CCEECT
T ss_pred             cc-eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcC-CCCCCEEEeCCc-ccEEhH
Confidence            43 356667888888888887765432   245788999999999765 55444445544 489999999754 776778


Q ss_pred             ccccCCCCCCeEeCCCCcCcCC---CCCCCCCccEEEcccc
Q 042944          427 DLSLNYAGYPGIDLSSNDFEGP---VPPVPGNVTSLNLSNN  464 (637)
Q Consensus       427 ~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~L~~L~L~~n  464 (637)
                      .+|.+|.+|+.+++..+ +..+   ....+.+|+++++..+
T Consensus       337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            88999999999999876 4433   3334678999998754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.50  E-value=1.4e-13  Score=124.01  Aligned_cols=128  Identities=21%  Similarity=0.291  Sum_probs=72.7

Q ss_pred             CeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccC
Q 042944          436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF  515 (637)
Q Consensus       436 ~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  515 (637)
                      +.++++++.+.......++++++|++++|++.+..+... ...++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus        10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF-DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTT-TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHh-cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence            456666666655444445566666666666654433322 1225666666666666654445556666666666666666


Q ss_pred             CCCccccccccCCc-cccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccc
Q 042944          516 SGNFLTFFVGEIPP-SLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHG  574 (637)
Q Consensus       516 ~~~~~~~~~~~~~~-~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~  574 (637)
                      +         .+|. .+..+++|++|++++|.++ .+|...+..+++|+.|++++|++..
T Consensus        89 ~---------~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           89 Q---------SLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             C---------CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             c---------ccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeec
Confidence            5         2222 3455666666666666665 4554444456666666666666553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=5.7e-14  Score=126.46  Aligned_cols=131  Identities=18%  Similarity=0.250  Sum_probs=80.5

Q ss_pred             hcCCCCCcEEEcCCCCCCCCCcccccccCCC-CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhcc
Q 042944           84 ITSLASLRDLYLASSTLLSINRPSLSSMNSS-TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFS  162 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l-~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~  162 (637)
                      +..+++|++|++++|.+..+     +.+..+ ++|++|++++|.+++.  ..+..+ ++|++|++++|.++ .++...+.
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i-----~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l-~~L~~L~Ls~N~l~-~~~~~~~~   85 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVI-----ENLGATLDQFDAIDFSDNEIRKL--DGFPLL-RRLKTLLVNNNRIC-RIGEGLDQ   85 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSC-----CCGGGGTTCCSEEECCSSCCCEE--CCCCCC-SSCCEEECCSSCCC-EECSCHHH
T ss_pred             cCCcCCceEEEeeCCCCchh-----HHhhhcCCCCCEEECCCCCCCcc--cccccC-CCCCEEECCCCccc-ccCcchhh
Confidence            44566777777777776654     123222 3677777777776654  234444 66777777777776 55554456


Q ss_pred             CCCCCCEEEcCCCcccchhh--hcCCCCCCcEEEcCCCcCCCCchh----HhhhcccCCCCcccEEEcCCCCC
Q 042944          163 NMTALQHLNLSLNQISAISK--SFGNMCGLKTLHLFDNNLTGQLPE----LFLNLSGCSKNSLEILKLGGNKL  229 (637)
Q Consensus       163 ~l~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~l~~n~i~~~~~~----~l~~l~~~~~~~L~~L~l~~n~~  229 (637)
                      .+++|++|++++|+++.+|.  .+..+++|++|++++|.+. ..|.    .+..++     +|+.|++++|..
T Consensus        86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~-----~L~~Ld~~~n~~  152 (176)
T 1a9n_A           86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP-----QVRVLDFQKVKL  152 (176)
T ss_dssp             HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT-----TCSEETTEECCH
T ss_pred             cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC-----ccceeCCCcCCH
Confidence            67777777777777766665  5666677777777777665 2333    355555     666666665544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.42  E-value=2.2e-15  Score=138.64  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=98.3

Q ss_pred             CCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhc
Q 042944          479 EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDT  558 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~  558 (637)
                      ++|++|++++|.+++ +| .+..+++|+.|++++|.++         .+|..+..+++|++|++++|.++ .+| .+. .
T Consensus        48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~---------~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~-~  113 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK---------KIENLDAVADTLEELWISYNQIA-SLS-GIE-K  113 (198)
T ss_dssp             TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC---------SCSSHHHHHHHCSEEEEEEEECC-CHH-HHH-H
T ss_pred             CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc---------cccchhhcCCcCCEEECcCCcCC-cCC-ccc-c
Confidence            788888888888875 55 7888888999999988887         56666777788899999999887 455 444 5


Q ss_pred             CCCCcEEeccCccccccCC-ccccCCCCCcEeeCCCCccccccccc----------ccccccceeeccCCCeeE
Q 042944          559 LPKLAILSLRSNQFHGSIP-RNLCRLSKIQLLDFSLNSISGAIPKC----------INNLTAMVEKASSNSTIT  621 (637)
Q Consensus       559 l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~p~~----------l~~l~~L~~l~l~~n~l~  621 (637)
                      +++|+.|++++|++++..+ ..+..+++|++|++++|++.+..|..          +..+++|+.|+  +|.++
T Consensus       114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            8889999999998873221 36788888999999999888766543          78888888876  66553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=1.3e-12  Score=116.46  Aligned_cols=108  Identities=23%  Similarity=0.266  Sum_probs=89.0

Q ss_pred             CccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcC
Q 042944          480 YFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTL  559 (637)
Q Consensus       480 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l  559 (637)
                      ..+.+++++|.++ .+|..+  .++|+.|++++|.|++        ..|..+..+++|++|++++|+++ .++...+..+
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~--------~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l   77 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITK--------LEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL   77 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCC--------CCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTC
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCc--------cChhhhcCcccCCEEECCCCCcC-ccChhhccCC
Confidence            4578999999998 466555  3889999999999883        23556888999999999999998 7777766679


Q ss_pred             CCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944          560 PKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA  599 (637)
Q Consensus       560 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~  599 (637)
                      ++|+.|+|++|++++..+..|..+++|+.|++++|++...
T Consensus        78 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           78 TQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999999999999865566788999999999999998754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=2.8e-12  Score=114.69  Aligned_cols=107  Identities=19%  Similarity=0.212  Sum_probs=88.4

Q ss_pred             ccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCC
Q 042944          481 FSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLP  560 (637)
Q Consensus       481 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~  560 (637)
                      -+.++++++.++ .+|..+.  ++|+.|++++|.|++        ..|..+..+++|++|++++|+++ .+|...+..++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~   81 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITK--------LEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLT   81 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccc--------cCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcc
Confidence            378999999997 5666554  889999999999883        23566888999999999999998 67777666799


Q ss_pred             CCcEEeccCccccccCCccccCCCCCcEeeCCCCccccc
Q 042944          561 KLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGA  599 (637)
Q Consensus       561 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~  599 (637)
                      +|+.|+|++|++++..+..|..+++|+.|++++|++...
T Consensus        82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            999999999999955555588999999999999999843

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=6.2e-13  Score=134.35  Aligned_cols=164  Identities=23%  Similarity=0.300  Sum_probs=117.8

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccccc-cC-CCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhc--
Q 042944           86 SLASLRDLYLASSTLLSINRPSLSS-MN-SSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAF--  161 (637)
Q Consensus        86 ~~~~L~~L~l~~~~~~~~~~~~~~~-l~-~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~--  161 (637)
                      ..++|++|++++|.++......+.. +. ..++|++|+|++|.+++.....+...+++|++|+|++|.++ ......+  
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~-~~~~~~L~~  148 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG-PEACKDLRD  148 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC-HHHHHHHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC-HHHHHHHHH
Confidence            3578999999999988754322222 22 23799999999999988777777776689999999999987 4333233  


Q ss_pred             ---cCCCCCCEEEcCCCcccc-----hhhhcCCCCCCcEEEcCCCcCCCCc----hhHhhhcccCCCCcccEEEcCCCCC
Q 042944          162 ---SNMTALQHLNLSLNQISA-----ISKSFGNMCGLKTLHLFDNNLTGQL----PELFLNLSGCSKNSLEILKLGGNKL  229 (637)
Q Consensus       162 ---~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~l~~n~i~~~~----~~~l~~l~~~~~~~L~~L~l~~n~~  229 (637)
                         ...++|++|+|++|.+++     ++..+..+++|++|++++|.+.+..    +..+...+     +|++|++++|.+
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-----~L~~L~Ls~N~i  223 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-----QLQELNVAYNGA  223 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-----CCCEEECCSSCC
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-----CcCeEECCCCCC
Confidence               357899999999999876     5566788999999999999987543    33344444     788888888777


Q ss_pred             CCCc-----CCcccCCCccEEEccCCcCCCC
Q 042944          230 TGSL-----PDITEFSSLQELHLFDNKLDGS  255 (637)
Q Consensus       230 ~~~~-----~~~~~~~~L~~L~l~~n~i~~~  255 (637)
                      +...     ..+...+.|++|++++|.+++.
T Consensus       224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          224 GDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            6321     1233455666777766666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=2.4e-14  Score=131.66  Aligned_cols=130  Identities=20%  Similarity=0.216  Sum_probs=106.2

Q ss_pred             CccEEeCCCCCCccc------CchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCCh
Q 042944          480 YFSYLDVSDNLLSGE------LPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPA  553 (637)
Q Consensus       480 ~L~~L~l~~n~l~~~------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~  553 (637)
                      .++.++++++.+.+.      +|..+..+++|++|++++|.++         .+| .+..+++|++|++++|.++ .+|.
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~---------~l~-~~~~l~~L~~L~l~~n~l~-~l~~   87 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---------KIS-SLSGMENLRILSLGRNLIK-KIEN   87 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES---------CCC-CHHHHTTCCEEEEEEEEEC-SCSS
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc---------ccc-ccccCCCCCEEECCCCCcc-cccc
Confidence            344444444444433      3448999999999999999998         566 7889999999999999998 8887


Q ss_pred             hhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccccccc-ccccccccceeeccCCCeeEEE
Q 042944          554 WIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIP-KCINNLTAMVEKASSNSTITHI  623 (637)
Q Consensus       554 ~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p-~~l~~l~~L~~l~l~~n~l~~~  623 (637)
                      .+. .+++|++|++++|++++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|+++..
T Consensus        88 ~~~-~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           88 LDA-VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHH-HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             hhh-cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            665 58999999999999984 55 68899999999999999985332 4789999999999999988543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.32  E-value=5.8e-11  Score=121.67  Aligned_cols=319  Identities=12%  Similarity=0.111  Sum_probs=200.9

Q ss_pred             cccchhhcCCC-CCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCC---CCchhhhHHHhhcCCCcEEECCCCCCC
Q 042944           78 NTCIVTITSLA-SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCG---LSNSAYHWLFKISSNLLALDLNSNQLA  153 (637)
Q Consensus        78 ~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~---i~~~~~~~~~~~~~~L~~L~L~~n~l~  153 (637)
                      ..+-.+|..++ .|+.+.+... ++.+..   .+|.+|++|+.+.+..+.   ++.....+|..+ .+|+.+.+..+ ++
T Consensus        53 ~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~---~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c-~~L~~i~~~~~-~~  126 (394)
T 4gt6_A           53 KIGDRVFCNYKYVLTSVQIPDT-VTEIGS---NAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFC-SELTDIPILDS-VT  126 (394)
T ss_dssp             EECTTTTTTCCSCCCEEEECTT-CCEECT---TTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTC-TTCCBCGGGTT-CS
T ss_pred             EcCHhhccCCCCcCEEEEECCC-eeEEhH---HHhhCCccCceEeecCCCCCeeeEechhhchhc-ccceeeccCCc-cc
Confidence            33445677774 5999999754 666654   567778999999987663   555555555555 88888887754 55


Q ss_pred             CCCCchhccCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC
Q 042944          154 GPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS  232 (637)
Q Consensus       154 ~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~  232 (637)
                       .++..+|..+.+|+.+.+..+ +..+ ..+|.++.+|+.+.+.++ +......+|.. .     +|+.+.+..+.....
T Consensus       127 -~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~-----~l~~i~ip~~~~~i~  197 (394)
T 4gt6_A          127 -EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-T-----ALTQIHIPAKVTRIG  197 (394)
T ss_dssp             -EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-C-----CCSEEEECTTCCEEC
T ss_pred             -eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-c-----ceeEEEECCcccccc
Confidence             777778899999999999754 4444 357888999999998765 44355556643 3     788888876544333


Q ss_pred             cCCcccCCCccEEEccCCcCCCCCCCc-------------CCCCCCCcEEEcCCCCCCCCCC-CCCCCCCCCEEEccCCc
Q 042944          233 LPDITEFSSLQELHLFDNKLDGSFPEK-------------FRKPSPLVILNLDGNQLWGSLP-DLSVFPFLTRLDVSDSR  298 (637)
Q Consensus       233 ~~~~~~~~~L~~L~l~~n~i~~~~~~~-------------l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~  298 (637)
                      ...+..+..+.................             +.....+..+.+... +..... .+..+..|+.+.+..+.
T Consensus       198 ~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~  276 (394)
T 4gt6_A          198 TNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSV  276 (394)
T ss_dssp             TTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTC
T ss_pred             cchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEeccccc
Confidence            344566667776665544332111111             111223333433322 111222 24447888888886654


Q ss_pred             CCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccc
Q 042944          299 LNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPK  378 (637)
Q Consensus       299 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  378 (637)
                      .. ....+|.++++|+.+.+.. .+.. ++...|.+|.+|+.+++..+ ++.....+|..+.+|+.+.+..+ +......
T Consensus       277 ~~-I~~~aF~~c~~L~~i~l~~-~i~~-I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~  351 (394)
T 4gt6_A          277 VS-IGTGAFMNCPALQDIEFSS-RITE-LPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPES  351 (394)
T ss_dssp             CE-ECTTTTTTCTTCCEEECCT-TCCE-ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGG
T ss_pred             ce-ecCcccccccccccccCCC-cccc-cCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHh
Confidence            33 5556788888999988864 3433 55567888999999998754 66667778888899999988654 5555567


Q ss_pred             cccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcC
Q 042944          379 WLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHL  421 (637)
Q Consensus       379 ~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i  421 (637)
                      .|.+|++|+.+++.++...   ...+. ...+|+.+.+..+.+
T Consensus       352 aF~~C~~L~~i~~~~~~~~---~~~~~-~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          352 AFSNCTALNNIEYSGSRSQ---WNAIS-TDSGLQNLPVAPGSI  390 (394)
T ss_dssp             GGTTCTTCCEEEESSCHHH---HHTCB-CCCCC----------
T ss_pred             HhhCCCCCCEEEECCceee---hhhhh-ccCCCCEEEeCCCCE
Confidence            7889999999999876432   11222 236788887766543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=1.2e-13  Score=139.66  Aligned_cols=171  Identities=15%  Similarity=0.072  Sum_probs=83.7

Q ss_pred             CCCccEEECCCCcCCCcccccccC-----CCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCcc
Q 042944          408 SPNLYYLNLSHNHLEGTVLDLSLN-----YAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFS  482 (637)
Q Consensus       408 ~~~L~~L~l~~n~i~~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  482 (637)
                      .+.|++|++++|.++......+..     .+.|+.|++++|.+.                     +..........++|+
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~---------------------~~~~~~l~~~L~~L~  129 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD---------------------PAGLRTLLPVFLRAR  129 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC---------------------HHHHHHTHHHHHTEE
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC---------------------HHHHHHHHHHHHhcc
Confidence            368888888888887544333221     245555555555443                     221111111113455


Q ss_pred             EEeCCCCCCcccCchhhh-----ccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccC----Ch
Q 042944          483 YLDVSDNLLSGELPDCLL-----RWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTI----PA  553 (637)
Q Consensus       483 ~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~----~~  553 (637)
                      .|++++|.+++.....+.     ..++|++|++++|.+++....    .++..+..+++|++|++++|.+++..    ..
T Consensus       130 ~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~----~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA----VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             EEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHH----HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             HhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHH----HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence            555555555543333221     235566666666655422111    22233445555666666666654221    22


Q ss_pred             hhhhcCCCCcEEeccCcccccc----CCccccCCCCCcEeeCCCCcccccccccc
Q 042944          554 WIGDTLPKLAILSLRSNQFHGS----IPRNLCRLSKIQLLDFSLNSISGAIPKCI  604 (637)
Q Consensus       554 ~l~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~ls~n~l~~~~p~~l  604 (637)
                      .+. ..++|++|+|++|.+++.    +...+...++|++|||++|++++.....+
T Consensus       206 ~L~-~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          206 QLD-RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HGG-GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHh-cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            222 345666666666665532    22333445566666666666654443333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.32  E-value=7.3e-12  Score=111.63  Aligned_cols=105  Identities=23%  Similarity=0.309  Sum_probs=85.3

Q ss_pred             CccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCc-cccC
Q 042944          455 NVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPP-SLKK  533 (637)
Q Consensus       455 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~l~~  533 (637)
                      ..+++++++|+++.....+.    +++++|++++|.+++..+..|..+++|+.|++++|+|+         .+|. .+..
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~----~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~---------~l~~~~f~~   76 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP----TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT---------VLPAGVFDK   76 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC---------CCCTTTTTT
T ss_pred             CCCEEEeCCCCcCccCccCC----CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC---------ccChhhccC
Confidence            35788999998886554332    78899999999999877888999999999999999988         4444 3578


Q ss_pred             CCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccc
Q 042944          534 CNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFH  573 (637)
Q Consensus       534 l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~  573 (637)
                      +++|++|++++|.++ .++...+..+++|+.|+|++|++.
T Consensus        77 l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           77 LTQLTQLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCCEEECCCCccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence            899999999999998 666665557899999999999887

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.31  E-value=7.3e-12  Score=112.00  Aligned_cols=108  Identities=22%  Similarity=0.264  Sum_probs=88.2

Q ss_pred             ccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCcc-ccCC
Q 042944          456 VTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPS-LKKC  534 (637)
Q Consensus       456 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~-l~~l  534 (637)
                      -+.+++++|+++..+..+.    ++|++|++++|.+++..+..|..+++|+.|++++|+|+         .+|.. +..+
T Consensus        14 ~~~l~~~~n~l~~iP~~~~----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---------~i~~~~~~~l   80 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT---------AIPTGVFDKL   80 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTC
T ss_pred             CcEEEeCCCCCCccCCCcC----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC---------ccChhHhCCc
Confidence            3688999999876554332    78999999999999888888999999999999999988         55554 5788


Q ss_pred             CCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCc
Q 042944          535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPR  578 (637)
Q Consensus       535 ~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~  578 (637)
                      ++|++|++++|.++ .+|...+..+++|+.|+|++|++. ..+.
T Consensus        81 ~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~-c~~~  122 (174)
T 2r9u_A           81 TQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWD-CECR  122 (174)
T ss_dssp             TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred             chhhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence            99999999999998 677665557999999999999987 4443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.30  E-value=1.1e-10  Score=119.71  Aligned_cols=267  Identities=13%  Similarity=0.114  Sum_probs=158.5

Q ss_pred             cccCCCC-CccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCC---CCCCCCchhccCCCCCCEEEcCCCcccch-hhh
Q 042944          109 SSMNSST-SLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQ---LAGPIPDYAFSNMTALQHLNLSLNQISAI-SKS  183 (637)
Q Consensus       109 ~~l~~l~-~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~---l~~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~  183 (637)
                      .+|.++. .|+++.+..+ ++.....+|..+ .+|+.+.+..+.   ++ .++..+|.++.+|+.+.+..+ ++.+ ..+
T Consensus        57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C-~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a  132 (394)
T 4gt6_A           57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNC-TSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEA  132 (394)
T ss_dssp             TTTTTCCSCCCEEEECTT-CCEECTTTTTTC-TTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred             hhccCCCCcCEEEEECCC-eeEEhHHHhhCC-ccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhh
Confidence            4455664 5999999765 666666667776 999999998753   66 788889999999999888654 5555 357


Q ss_pred             cCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCC
Q 042944          184 FGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKP  263 (637)
Q Consensus       184 ~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l  263 (637)
                      |.++.+|+.+.+..+. ......+|..+.     +|+.+.+..+ +............|+.+.+..+-. .....+|..+
T Consensus       133 F~~c~~L~~i~lp~~~-~~I~~~~F~~c~-----~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c  204 (394)
T 4gt6_A          133 FHHCEELDTVTIPEGV-TSVADGMFSYCY-----SLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSEC  204 (394)
T ss_dssp             TTTCTTCCEEECCTTC-CEECTTTTTTCT-----TCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTC
T ss_pred             hhhhccccccccccee-eeecccceeccc-----ccccccccce-eeEeccccccccceeEEEECCccc-ccccchhhhc
Confidence            8899999999997653 335667777777     8999998765 332333333456788888876543 2556778888


Q ss_pred             CCCcEEEcCCCCCCCCCCCCCC--------------CCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccch
Q 042944          264 SPLVILNLDGNQLWGSLPDLSV--------------FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITE  329 (637)
Q Consensus       264 ~~L~~L~l~~~~~~~~~~~~~~--------------~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  329 (637)
                      ..+................+..              ...+..+.+... +......+|.++..|+.+.+..+...  +..
T Consensus       205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~--I~~  281 (394)
T 4gt6_A          205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS--IGT  281 (394)
T ss_dssp             TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE--ECT
T ss_pred             cccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce--ecC
Confidence            8888887765544322111111              112223332211 11123344555666666665443221  333


Q ss_pred             hhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEee
Q 042944          330 SHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDIS  392 (637)
Q Consensus       330 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~  392 (637)
                      ..|.++++|+.+.+. +.+......+|..+.+|+.+.+..+ ++......|.+|.+|+.+.+.
T Consensus       282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred             cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence            455566666666654 2333344444555555555555432 222222344444444444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=1.4e-10  Score=116.86  Aligned_cols=104  Identities=21%  Similarity=0.189  Sum_probs=78.5

Q ss_pred             cEEeCCCC-CCcccCchhhhccCCCcEEeccC-ccCCCCccccccccCC-ccccCCCCCcEEEcCCCcccccCChhhhhc
Q 042944          482 SYLDVSDN-LLSGELPDCLLRWQALAVLNLAN-NNFSGNFLTFFVGEIP-PSLKKCNELKIIDAGDNKFSGTIPAWIGDT  558 (637)
Q Consensus       482 ~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~  558 (637)
                      ..++.+++ .++ .+|. +..+++|+.|+|++ |.|.         .++ ..+..+++|++|++++|.+++ ++...+..
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~---------~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~   78 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ---------HLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHF   78 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC---------EECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGS
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC---------CcChhHhccccCCCEEECCCCccce-eCHHHhcC
Confidence            35678887 787 5777 88888899999986 8887         444 457888899999999999884 44444447


Q ss_pred             CCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccc
Q 042944          559 LPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG  598 (637)
Q Consensus       559 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~  598 (637)
                      +++|+.|+|++|++++..+..+..++ |+.|++++|++..
T Consensus        79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            89999999999998854444455454 8999999988874

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.02  E-value=2e-08  Score=102.27  Aligned_cols=128  Identities=16%  Similarity=0.190  Sum_probs=71.9

Q ss_pred             hhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhc
Q 042944           82 VTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAF  161 (637)
Q Consensus        82 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~  161 (637)
                      .|+....+|+.+.+.. .++.+..   .+|.+|.+|+++++..+ ++.....+|..  .+|+.+.+..+ +. .++..+|
T Consensus        40 ~~~~~~~~i~~v~ip~-~vt~Ig~---~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~--c~l~~i~~~~~-l~-~I~~~aF  110 (379)
T 4h09_A           40 PWYKDRDRISEVRVNS-GITSIGE---ANFNSCYNMTKVTVAST-VTSIGDGAFAD--TKLQSYTGMER-VK-KFGDYVF  110 (379)
T ss_dssp             TTGGGGGGCSEEEECT-TEEEECT---TTTTTCTTCCEEEECTT-CCEECTTTTTT--CCCCEEEECTT-CC-EECTTTT
T ss_pred             cccccccCCEEEEeCC-CccChHH---HHhhCCCCCCEEEeCCc-ceEechhhhcC--CCCceEECCce-ee-Eecccee
Confidence            4556667788888764 3555554   45666778888888654 55444444443  25666666543 44 6666667


Q ss_pred             cCCCCCCEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCC
Q 042944          162 SNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGN  227 (637)
Q Consensus       162 ~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n  227 (637)
                      ... +|+.+.+..+ +..+. .+|.++ +++.+.+..+ +......+|..+.     +++...+...
T Consensus       111 ~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~-----~l~~~~~~~~  168 (379)
T 4h09_A          111 QGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAE-----NLEKIEVSSN  168 (379)
T ss_dssp             TTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCT-----TCCEEEECTT
T ss_pred             ccC-CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccc-----cccccccccc
Confidence            654 6777777654 33332 234433 4555555443 2223344454444     5666655543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.01  E-value=2e-08  Score=102.19  Aligned_cols=106  Identities=15%  Similarity=0.206  Sum_probs=53.2

Q ss_pred             hhhcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhc
Q 042944           82 VTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAF  161 (637)
Q Consensus        82 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~  161 (637)
                      .+|..+.+|+.++|..+ ++.+..   .+|.++ +|+.+.+..+ +...... .+.. .+|+.+.+..+ +. .+...+|
T Consensus        63 ~aF~~C~~L~~I~lp~~-v~~Ig~---~aF~~c-~l~~i~~~~~-l~~I~~~-aF~~-~~L~~i~lp~~-~~-~i~~~~F  132 (379)
T 4h09_A           63 ANFNSCYNMTKVTVAST-VTSIGD---GAFADT-KLQSYTGMER-VKKFGDY-VFQG-TDLDDFEFPGA-TT-EIGNYIF  132 (379)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECT---TTTTTC-CCCEEEECTT-CCEECTT-TTTT-CCCSEEECCTT-CC-EECTTTT
T ss_pred             HHhhCCCCCCEEEeCCc-ceEech---hhhcCC-CCceEECCce-eeEeccc-eecc-CCcccccCCCc-cc-ccccccc
Confidence            45666667777776543 444543   233333 4566655443 3322222 2333 45667766653 33 4445455


Q ss_pred             cCCCCCCEEEcCCCcccch-hhhcCCCCCCcEEEcCCCc
Q 042944          162 SNMTALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNN  199 (637)
Q Consensus       162 ~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~l~~n~  199 (637)
                      .++ +|+.+.+..+ ++.+ ..+|.++.+++.+.+..+.
T Consensus       133 ~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~  169 (379)
T 4h09_A          133 YNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNN  169 (379)
T ss_dssp             TTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTC
T ss_pred             ccc-eeeeeeccce-eeccccchhccccccccccccccc
Confidence            544 4555554433 3332 2345666666666665443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.94  E-value=9.2e-10  Score=110.02  Aligned_cols=136  Identities=13%  Similarity=0.226  Sum_probs=90.4

Q ss_pred             CCccEEeCCCCCCcccCchhhh--ccCCCcEEeccC--ccC-CCCccccccccCCccc--cCCCCCcEEEcCCCcccccC
Q 042944          479 EYFSYLDVSDNLLSGELPDCLL--RWQALAVLNLAN--NNF-SGNFLTFFVGEIPPSL--KKCNELKIIDAGDNKFSGTI  551 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~--n~l-~~~~~~~~~~~~~~~l--~~l~~L~~L~ls~n~l~~~~  551 (637)
                      ++|+.|++..|.+.......+.  .+|+|+.|+|+.  |.. .+....    .+...+  ..+++|++|++++|.+.+..
T Consensus       193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~----~l~~~l~~~~~p~Lr~L~L~~~~i~~~~  268 (362)
T 2ra8_A          193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN----VFRPLFSKDRFPNLKWLGIVDAEEQNVV  268 (362)
T ss_dssp             TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG----GTGGGSCTTTCTTCCEEEEESCTTHHHH
T ss_pred             CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH----HHHHHHhcCCCCCcCEEeCCCCCCchHH
Confidence            7778888877777654444454  678999998853  221 111010    111112  35789999999999887555


Q ss_pred             Chhhhh--cCCCCcEEeccCcccccc----CCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCe
Q 042944          552 PAWIGD--TLPKLAILSLRSNQFHGS----IPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNST  619 (637)
Q Consensus       552 ~~~l~~--~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~  619 (637)
                      +..+++  .+++|++|+|++|.+.+.    ++..+..+++|+.|++++|.+++..-..+...- ..++++++++
T Consensus       269 ~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          269 VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred             HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence            545543  478899999999998753    445556789999999999998765444444311 3678888887

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.94  E-value=1.9e-09  Score=108.47  Aligned_cols=104  Identities=16%  Similarity=0.140  Sum_probs=85.7

Q ss_pred             cEEEcccc-cccCcccccccccCCCccEEeCCC-CCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCC
Q 042944          457 TSLNLSNN-KFSGPISSLCSISGEYFSYLDVSD-NLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKC  534 (637)
Q Consensus       457 ~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l  534 (637)
                      ..++++++ +++..+. +.  ..++|+.|+|++ |.+++..+..|.++++|+.|+|++|.|++        ..|..+.++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~--~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~l   79 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LP--GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF--------VAPDAFHFT   79 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SC--SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE--------ECTTGGGSC
T ss_pred             CEEEcCCCCCCCccCC-CC--CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce--------eCHHHhcCC
Confidence            45788887 8876544 22  237899999996 99998888899999999999999999883        344567899


Q ss_pred             CCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccc
Q 042944          535 NELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFH  573 (637)
Q Consensus       535 ~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~  573 (637)
                      ++|++|++++|.++ .+|...+..++ |+.|+|++|++.
T Consensus        80 ~~L~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           80 PRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCCEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cCCCEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence            99999999999998 78877775454 999999999987

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.76  E-value=3.4e-09  Score=105.88  Aligned_cols=136  Identities=12%  Similarity=0.100  Sum_probs=73.2

Q ss_pred             CCCccEEEcccccccCccccccc-ccCCCccEEeCCCC--C-Ccc----cCchhh--hccCCCcEEeccCccCCCCcccc
Q 042944          453 PGNVTSLNLSNNKFSGPISSLCS-ISGEYFSYLDVSDN--L-LSG----ELPDCL--LRWQALAVLNLANNNFSGNFLTF  522 (637)
Q Consensus       453 ~~~L~~L~L~~n~l~~~~~~~~~-~~~~~L~~L~l~~n--~-l~~----~~~~~l--~~l~~L~~L~l~~n~l~~~~~~~  522 (637)
                      .++|++|++..|.+......... ...|+|+.|+|+.+  . ..+    .+...+  ..+|+|+.|++.+|.+.+..+..
T Consensus       192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~  271 (362)
T 2ra8_A          192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM  271 (362)
T ss_dssp             CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred             CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence            45666666666655432211111 12366777766421  1 100    111122  24678888888888776321111


Q ss_pred             ccccCCccccCCCCCcEEEcCCCcccccCChhhh---hcCCCCcEEeccCccccccCCccccC-CCCCcEeeCCCCc
Q 042944          523 FVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIG---DTLPKLAILSLRSNQFHGSIPRNLCR-LSKIQLLDFSLNS  595 (637)
Q Consensus       523 ~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~---~~l~~L~~L~L~~n~~~~~~~~~l~~-l~~L~~L~ls~n~  595 (637)
                          +.. ...+++|++|+++.|.+.+.....+.   +++++|+.|+|++|.++...-..+.. +  ...++++++.
T Consensus       272 ----la~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          272 ----FLE-SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             ----HHH-CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             ----HHh-CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence                000 12467888888888888754332222   24688888888888877443333332 2  3567888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.71  E-value=1.2e-08  Score=91.82  Aligned_cols=117  Identities=13%  Similarity=0.173  Sum_probs=83.7

Q ss_pred             hcCCCCCcEEEcCCC-CCCCCCccc-ccccCCCCCccEEECCCCCCCchhhhHHHhhc---CCCcEEECCCCCCCCC---
Q 042944           84 ITSLASLRDLYLASS-TLLSINRPS-LSSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS---SNLLALDLNSNQLAGP---  155 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~-~~~~~~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~---~~L~~L~L~~n~l~~~---  155 (637)
                      +...++|++|+|++| .+.+..... ...+...++|++|+|++|.+.+.....+.+.+   ++|++|+|++|.+.+.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            567888999999988 877643222 24456678899999999998876554443332   6788999998888622   


Q ss_pred             -CCchhccCCCCCCEEEc--CCCcccc-----hhhhcCCCCCCcEEEcCCCcCC
Q 042944          156 -IPDYAFSNMTALQHLNL--SLNQISA-----ISKSFGNMCGLKTLHLFDNNLT  201 (637)
Q Consensus       156 -l~~~~~~~l~~L~~L~L--~~n~l~~-----l~~~~~~l~~L~~L~l~~n~i~  201 (637)
                       +.. ++...++|++|++  ++|.+..     +...+...++|++|++++|.+.
T Consensus       112 ~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             222 4667778888888  7788876     4556677788888888888764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=4e-08  Score=88.47  Aligned_cols=116  Identities=12%  Similarity=0.138  Sum_probs=83.4

Q ss_pred             cccCCCCCccEEECCCC-CCCchhhhHHHhh---cCCCcEEECCCCCCCCC----CCchhccCCCCCCEEEcCCCcccc-
Q 042944          109 SSMNSSTSLTLLDLSSC-GLSNSAYHWLFKI---SSNLLALDLNSNQLAGP----IPDYAFSNMTALQHLNLSLNQISA-  179 (637)
Q Consensus       109 ~~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~---~~~L~~L~L~~n~l~~~----l~~~~~~~l~~L~~L~L~~n~l~~-  179 (637)
                      ..+...++|++|+|++| .+.+.....+...   .++|++|+|++|.+...    +.. .+...++|++|+|++|.|.+ 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCCHH
Confidence            45667799999999999 9987665544443   27799999999988621    222 45566889999999998887 


Q ss_pred             ----hhhhcCCCCCCcEEEc--CCCcCCCCchhHh----hhcccCCCCcccEEEcCCCCCC
Q 042944          180 ----ISKSFGNMCGLKTLHL--FDNNLTGQLPELF----LNLSGCSKNSLEILKLGGNKLT  230 (637)
Q Consensus       180 ----l~~~~~~l~~L~~L~l--~~n~i~~~~~~~l----~~l~~~~~~~L~~L~l~~n~~~  230 (637)
                          +..++...+.|++|++  ++|.+.......+    ...+     +|++|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~-----~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-----TLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS-----SCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCC-----CcCEEeccCCCCC
Confidence                5667888888999999  7788875443333    3334     6777777776553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.37  E-value=8.9e-08  Score=90.50  Aligned_cols=80  Identities=19%  Similarity=0.326  Sum_probs=50.9

Q ss_pred             cCCCCCcEEEcCCCcccc--cCChhhhhcCCCCcEEeccCccccccCCccccCCC--CCcEeeCCCCccccccc------
Q 042944          532 KKCNELKIIDAGDNKFSG--TIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLS--KIQLLDFSLNSISGAIP------  601 (637)
Q Consensus       532 ~~l~~L~~L~ls~n~l~~--~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~--~L~~L~ls~n~l~~~~p------  601 (637)
                      .++++|++|++++|.+++  .++..+. .+++|+.|+|++|++++.  ..+..+.  +|++|++++|++.+..|      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~-~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQ-KAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHH-HSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHh-hCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            456677777777777763  2233333 577777777777777643  2233344  77788888888776554      


Q ss_pred             -ccccccccceeec
Q 042944          602 -KCINNLTAMVEKA  614 (637)
Q Consensus       602 -~~l~~l~~L~~l~  614 (637)
                       ..+..+++|+.|+
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence             2456777777765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.30  E-value=2.9e-07  Score=80.46  Aligned_cols=88  Identities=16%  Similarity=0.251  Sum_probs=57.6

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCC-CCchhhhHHHhh---cCCCcEEECCCCC-CCCCCCchhcc
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCG-LSNSAYHWLFKI---SSNLLALDLNSNQ-LAGPIPDYAFS  162 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~~---~~~L~~L~L~~n~-l~~~l~~~~~~  162 (637)
                      .+|++|+++++.+++..   +..+..+++|++|+|++|. +++.....+...   +++|++|++++|. ++ +-.-..+.
T Consensus        61 ~~L~~LDLs~~~Itd~G---L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIG---FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIALH  136 (176)
T ss_dssp             CCEEEEEEESCCCCGGG---GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHGG
T ss_pred             ceEeEEeCcCCCccHHH---HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHHh
Confidence            36788888888766654   4666777888888888874 776666666652   2467888888774 55 32222456


Q ss_pred             CCCCCCEEEcCCCc-ccc
Q 042944          163 NMTALQHLNLSLNQ-ISA  179 (637)
Q Consensus       163 ~l~~L~~L~L~~n~-l~~  179 (637)
                      ++++|++|++++|. +++
T Consensus       137 ~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCEEECCCCCCCCc
Confidence            66777777777663 443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=8.4e-07  Score=83.81  Aligned_cols=79  Identities=25%  Similarity=0.296  Sum_probs=47.7

Q ss_pred             cCCCcEEECCCCCCCCCCCc--hhccCCCCCCEEEcCCCcccchhh--hcCCCCCCcEEEcCCCcCCCCch-------hH
Q 042944          139 SSNLLALDLNSNQLAGPIPD--YAFSNMTALQHLNLSLNQISAISK--SFGNMCGLKTLHLFDNNLTGQLP-------EL  207 (637)
Q Consensus       139 ~~~L~~L~L~~n~l~~~l~~--~~~~~l~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~l~~n~i~~~~~-------~~  207 (637)
                      +++|++|+|++|.++ .++.  ..+..+++|++|+|++|+++.+.+  .+..+ +|++|++++|.+.+..|       ..
T Consensus       169 l~~L~~L~Ls~N~l~-~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCC-CCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCC-CCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence            467777777777776 3332  144567777777777777776521  23333 77777777777764332       23


Q ss_pred             hhhcccCCCCcccEEEc
Q 042944          208 FLNLSGCSKNSLEILKL  224 (637)
Q Consensus       208 l~~l~~~~~~~L~~L~l  224 (637)
                      +..++     +|+.|+-
T Consensus       247 l~~~P-----~L~~LDg  258 (267)
T 3rw6_A          247 RERFP-----KLLRLDG  258 (267)
T ss_dssp             HHHCT-----TCCEESS
T ss_pred             HHHCc-----ccCeECC
Confidence            55555     7777663

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.15  E-value=9.3e-07  Score=77.23  Aligned_cols=85  Identities=7%  Similarity=0.035  Sum_probs=58.1

Q ss_pred             CceeEEeccCCcCCCCccccccCCCCccEEEeeCCC-CCCccchhhhhc---CCCccEEECCCCc-CCCcccccccCCCC
Q 042944          360 FQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTE-ISDAVPSWFWDL---SPNLYYLNLSHNH-LEGTVLDLSLNYAG  434 (637)
Q Consensus       360 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-i~~~~~~~~~~~---~~~L~~L~l~~n~-i~~~~~~~~~~~~~  434 (637)
                      ..|+.|++++|.++..-...+..+++|+.|+|++|. +++.....+...   .++|++|++++|. +++.....+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            457777777777665555666778888888888874 666555555542   2468888888874 77666666666777


Q ss_pred             CCeEeCCCCc
Q 042944          435 YPGIDLSSND  444 (637)
Q Consensus       435 L~~L~l~~n~  444 (637)
                      |++|++++|.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            7777777765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.79  E-value=1.8e-05  Score=70.53  Aligned_cols=116  Identities=12%  Similarity=0.119  Sum_probs=75.8

Q ss_pred             hcCCCCCcEEEcCCC-CCCCCCccc-ccccCCCCCccEEECCCCCCCchhhhHHHhhc---CCCcEEECCCCCCCCCCCc
Q 042944           84 ITSLASLRDLYLASS-TLLSINRPS-LSSMNSSTSLTLLDLSSCGLSNSAYHWLFKIS---SNLLALDLNSNQLAGPIPD  158 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~-~~~~~~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~---~~L~~L~L~~n~l~~~l~~  158 (637)
                      +.+-+.|++|+|+++ .+.+....+ ..++..-++|++|+|++|.+.+....++...+   +.|++|+|++|.|. .-..
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig-~~Ga  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT-PELL  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC-HHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC-HHHH
Confidence            355678888888875 666532211 24566668888888888888876665554322   67888888888876 3211


Q ss_pred             ----hhccCCCCCCEEEcCCC---cccc-----hhhhcCCCCCCcEEEcCCCcC
Q 042944          159 ----YAFSNMTALQHLNLSLN---QISA-----ISKSFGNMCGLKTLHLFDNNL  200 (637)
Q Consensus       159 ----~~~~~l~~L~~L~L~~n---~l~~-----l~~~~~~l~~L~~L~l~~n~i  200 (637)
                          .++..-+.|++|+|+++   .+..     +.+.+...+.|+.|+++.+.+
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                13455667888888754   3343     445566677788888776654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.78  E-value=6.5e-05  Score=66.87  Aligned_cols=113  Identities=12%  Similarity=0.104  Sum_probs=76.0

Q ss_pred             ccCCCCCccEEECCCC-CCCchhhhHHHhhc---CCCcEEECCCCCCCCCCCc----hhccCCCCCCEEEcCCCcccc--
Q 042944          110 SMNSSTSLTLLDLSSC-GLSNSAYHWLFKIS---SNLLALDLNSNQLAGPIPD----YAFSNMTALQHLNLSLNQISA--  179 (637)
Q Consensus       110 ~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~~---~~L~~L~L~~n~l~~~l~~----~~~~~l~~L~~L~L~~n~l~~--  179 (637)
                      .+.+-+.|++|+|++| .|.+.....+.+.+   ..|++|+|++|.+. .-..    .++..-+.|++|+|++|.|..  
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig-d~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS-DSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB-HHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC-hHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            3455688999999985 88876655444432   57999999999886 3221    144566789999999998887  


Q ss_pred             ---hhhhcCCCCCCcEEEcCCCc---CCCC----chhHhhhcccCCCCcccEEEcCCCC
Q 042944          180 ---ISKSFGNMCGLKTLHLFDNN---LTGQ----LPELFLNLSGCSKNSLEILKLGGNK  228 (637)
Q Consensus       180 ---l~~~~~~l~~L~~L~l~~n~---i~~~----~~~~l~~l~~~~~~~L~~L~l~~n~  228 (637)
                         +.+++...+.|++|+++++.   +...    +...+..-+     .|+.|+++.+.
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~-----tL~~L~l~~~~  168 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE-----SLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCS-----SCCEEECCCCC
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCC-----CcCeEeccCCC
Confidence               55677777889999998653   3322    223344444     67777776553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.56  E-value=0.0026  Score=52.73  Aligned_cols=58  Identities=16%  Similarity=0.313  Sum_probs=39.8

Q ss_pred             cEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccc
Q 042944          506 AVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFH  573 (637)
Q Consensus       506 ~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~  573 (637)
                      ..++.+++.++..       .+|..+  -++|++|++++|+|+ .++...+..+++|+.|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~-------~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWA-------SLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTT-------TSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccc-------cCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence            4677777776511       233322  135788888888887 777777777888888888888764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.14  E-value=0.0093  Score=49.34  Aligned_cols=38  Identities=24%  Similarity=0.169  Sum_probs=21.5

Q ss_pred             CCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCC
Q 042944          479 EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFS  516 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  516 (637)
                      ++++.|+|++|.|+...+..|..+++|+.|+|.+|++.
T Consensus        31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            34555555555555444455556666666666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	637
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-11
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	7e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.8 bits (190), Expect = 3e-16
 Identities = 58/260 (22%), Positives = 95/260 (36%), Gaps = 10/260 (3%)

Query: 165 TALQHLNLSLNQISAI-SKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILK 223
                L+L  N+I+ I    F N+  L TL L +N ++   P  F  L       LE L 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV-----KLERLY 85

Query: 224 LGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDL 283
           L  N+L      + +    QEL + +N++       F   + ++++ L  N L  S  + 
Sbjct: 86  LSKNQLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 143

Query: 284 SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDF 343
             F  + +L           +   G    L  L L GN +  +   S    L+ L  +  
Sbjct: 144 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLK-GLNNLAKLGL 202

Query: 344 SFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSW 403
           SFNS++   +        L  + L + KL    P  L   K    + + +  IS    + 
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSND 261

Query: 404 FWDLSPNLYYLNLSHNHLEG 423
           F     N    + S   L  
Sbjct: 262 FCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.3 bits (155), Expect = 8e-12
 Identities = 46/262 (17%), Positives = 91/262 (34%), Gaps = 34/262 (12%)

Query: 114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLS 173
                LLDL +  ++       FK   NL  L L +N+++   P  AF+ +  L+ L LS
Sbjct: 30  PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYLS 87

Query: 174 LNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSK----------------- 216
            NQ+  + +        + L + +N +T     +F  L+                     
Sbjct: 88  KNQLKELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

Query: 217 ----NSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLD 272
                 L  +++    +T     +    SL ELHL  NK+        +  + L  L L 
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 273 GNQLWGSLPDLSV-FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITES- 330
            N +           P L  L +++++L             ++ + L  N++  + +   
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-ADHKYIQVVYLHNNNISAIGSNDF 262

Query: 331 ----HVSNLSKLKYMDFSFNSL 348
               + +  +    +    N +
Sbjct: 263 CPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.5 bits (127), Expect = 3e-08
 Identities = 44/220 (20%), Positives = 73/220 (33%), Gaps = 17/220 (7%)

Query: 406 DLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL---NLS 462
           DL P+   L+L +N +         N      + L +N      P     +  L    LS
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 463 NNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTF 522
            N+    +  L     +    L V +N ++            + V+ L  N         
Sbjct: 88  KNQ----LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK------ 137

Query: 523 FVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCR 582
             G    + +   +L  I   D   + TIP  +    P L  L L  N+       +L  
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKG 193

Query: 583 LSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTITH 622
           L+ +  L  S NSIS      + N   + E   +N+ +  
Sbjct: 194 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 233

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 45/291 (15%), Positives = 85/291 (29%), Gaps = 37/291 (12%)

Query: 284 SVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDF 343
            + P    LD+ ++++          L  L  L L  N +  +   +  + L KL+ +  
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYL 86

Query: 344 SFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSW 403
           S N L            +L        K+       L +Q     L  +  + S      
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGA 145

Query: 404 FWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSN 463
           F  +   L Y+ ++  ++      L                        P ++T L+L  
Sbjct: 146 FQGM-KKLSYIRIADTNITTIPQGL------------------------PPSLTELHLDG 180

Query: 464 NKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFF 523
           NK +   ++         + L +S N +S      L     L  L+L NN          
Sbjct: 181 NKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV------- 232

Query: 524 VGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHG 574
             ++P  L     ++++   +N  S                 S        
Sbjct: 233 --KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 38/235 (16%), Positives = 72/235 (30%), Gaps = 33/235 (14%)

Query: 83  TITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNL 142
               L  L  LYL+ + L  +      ++        L +    ++         ++  +
Sbjct: 74  AFAPLVKLERLYLSKNQLKELPEKMPKTL------QELRVHENEITKVRKSVFNGLNQMI 127

Query: 143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTG 202
           +     +   +  I + AF  M  L ++ ++   I+ I +  G    L  LHL  N +T 
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITK 185

Query: 203 QLPELFLNL-------------------SGCSKNSLEILKLGGNKLTGSLPDITEFSSLQ 243
                   L                   S  +   L  L L  NKL      + +   +Q
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 245

Query: 244 ELHLFDNKLDGSFPEKFRKPSP------LVILNLDGNQLWGSLPDLSVFPFLTRL 292
            ++L +N +       F  P           ++L  N +       S F  +   
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 34/271 (12%), Positives = 74/271 (27%), Gaps = 29/271 (10%)

Query: 338 LKYMDFSFNSLA--LNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTE 395
              +D   N +    +  F  L    L ++ L++ K+    P           L +S  +
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLK--NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 396 ISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGN 455
           + + +P         L         +  +V +  LN      +  +     G        
Sbjct: 91  LKE-LPEKMPKTLQELRVHENEITKVRKSVFN-GLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 456 VTSL---NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLAN 512
           +  L    +++   +     L        + L +  N ++      L     LA L L+ 
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 513 NNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQF 572
           N+ S                    L+ +   +NK               + ++ L +N  
Sbjct: 205 NSISAVDNGSL--------ANTPHLRELHLNNNKLVKVPGGLAD--HKYIQVVYLHNNNI 254

Query: 573 HG------SIPRNLCRLSKIQLLDFSLNSIS 597
                     P    + +    +    N + 
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 8e-05
 Identities = 24/147 (16%), Positives = 53/147 (36%), Gaps = 3/147 (2%)

Query: 101 LSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYA 160
           ++    +        SLT L L    ++      L  +  N LA    S      + + +
Sbjct: 157 IADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGL--NNLAKLGLSFNSISAVDNGS 214

Query: 161 FSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKN-SL 219
            +N   L+ L+L+ N++  +     +   ++ ++L +NN++      F      +K  S 
Sbjct: 215 LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 274

Query: 220 EILKLGGNKLTGSLPDITEFSSLQELH 246
             + L  N +       + F  +    
Sbjct: 275 SGVSLFSNPVQYWEIQPSTFRCVYVRA 301

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.2 bits (95), Expect = 3e-04
 Identities = 32/197 (16%), Positives = 60/197 (30%), Gaps = 22/197 (11%)

Query: 437 GIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELP 496
            +  S    E     +P +   L+L NNK +         + +    L + +N +S   P
Sbjct: 14  VVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISP 72

Query: 497 DCLLRWQALAVLNLANNNF----------------SGNFLTFFVGEIPPSLKKCNELKII 540
                   L  L L+ N                    N +T     +   L +   +++ 
Sbjct: 73  GAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 132

Query: 541 DAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAI 600
                K SG         + KL+ + +       +IP+ L     +  L    N I+   
Sbjct: 133 T-NPLKSSGIENGAFQG-MKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVD 187

Query: 601 PKCINNLTAMVEKASSN 617
              +  L  + +   S 
Sbjct: 188 AASLKGLNNLAKLGLSF 204

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.0 bits (170), Expect = 2e-13
 Identities = 42/202 (20%), Positives = 85/202 (42%), Gaps = 20/202 (9%)

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQL 204
           L   +NQ++   P    +N   L  L+L+ NQ+  I  +  ++  L  L L +N ++   
Sbjct: 202 LIATNNQISDITPLGILTN---LDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA 257

Query: 205 PELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPS 264
           P             L  LKLG N+++  +  +   ++L  L L +N+L+           
Sbjct: 258 PL-------SGLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQLE--DISPISNLK 307

Query: 265 PLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLE 324
            L  L L  N +    P +S    L RL  ++++++      L  L+ + +L    N + 
Sbjct: 308 NLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQIS 364

Query: 325 GMITESHVSNLSKLKYMDFSFN 346
            +     ++NL+++  +  +  
Sbjct: 365 DLT---PLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 5e-13
 Identities = 58/361 (16%), Positives = 108/361 (29%), Gaps = 41/361 (11%)

Query: 266 LVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEG 325
            +   L    +  ++   +    +T L      +     +G+  L+ L  ++   N L  
Sbjct: 24  KMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD 80

Query: 326 MITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKW------ 379
           +     + NL+KL  +  + N +A       L      ++                    
Sbjct: 81  IT---PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 137

Query: 380 ------LQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYA 433
                 +        L            +    L+       L  +  + + + +     
Sbjct: 138 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT 197

Query: 434 GYPGIDLSSNDFEGPVPPV-PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLS 492
               +  ++N      P     N+  L+L+ N+    I +L S++    + LD+++N +S
Sbjct: 198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IGTLASLT--NLTDLDLANNQIS 254

Query: 493 GELPDCLLRWQALAVLNLANNNFSG------------NFLTFFVGEIPPSLKKCNELKII 540
              P  L     L  L L  N  S               L     E    +     L  +
Sbjct: 255 NLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYL 312

Query: 541 DAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAI 600
               N  S   P     +L KL  L   +N+   S   +L  L+ I  L    N IS   
Sbjct: 313 TLYFNNISDISPV---SSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQISDLT 367

Query: 601 P 601
           P
Sbjct: 368 P 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.4 bits (158), Expect = 6e-12
 Identities = 67/408 (16%), Positives = 126/408 (30%), Gaps = 48/408 (11%)

Query: 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNN 199
           +  +   L    +   +     +++  +  L      I +I      +  L  ++  +N 
Sbjct: 22  AEKMKTVLGKTNVTDTVS---QTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ 77

Query: 200 LTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEK 259
           LT   P    NL+               KL   L +  + + +  L    N    +    
Sbjct: 78  LTDITP--LKNLT---------------KLVDILMNNNQIADITPLANLTNLTGLTLFNN 120

Query: 260 FRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLF 319
                  +    + N+L  S   +S    L+ L        G     L  L+ L  L+  
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180

Query: 320 GNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKW 379
             S   +   S ++ L+ L+ +  + N   ++          L+ + L   +L       
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQ--ISDITPLGILTNLDELSLNGNQL--KDIGT 236

Query: 380 LQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGID 439
           L S  N   LD+++ +IS+  P         L  L L  N +        L       ++
Sbjct: 237 LASLTNLTDLDLANNQISNLAPLSGL---TKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 440 LSSNDFEGPVPPVPGNVTSLNLSNNKFSG--PISSLCSISGEYFSYLDVSDNLLSGELPD 497
             +   +        N+T L L  N  S   P+SSL  +       L  ++N +S     
Sbjct: 294 -ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL-----QRLFFANNKVSD--VS 345

Query: 498 CLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDN 545
            L     +  L+  +N  S              L     +  +   D 
Sbjct: 346 SLANLTNINWLSAGHNQISD----------LTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.0 bits (157), Expect = 7e-12
 Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 26/192 (13%)

Query: 120 LDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA 179
           L  ++  +S+     +    +NL  L LN NQL         +++T L  L+L+ NQIS 
Sbjct: 202 LIATNNQISDITPLGIL---TNLDELSLNGNQLKDIGT---LASLTNLTDLDLANNQISN 255

Query: 180 ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSK---------------NSLEILKL 224
           ++     +  L  L L  N ++   P   L      +                +L  L L
Sbjct: 256 LA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 225 GGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLS 284
             N ++   P ++  + LQ L   +NK+           + +  L+   NQ+    P L+
Sbjct: 315 YFNNISDISP-VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP-LA 370

Query: 285 VFPFLTRLDVSD 296
               +T+L ++D
Sbjct: 371 NLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 6e-11
 Identities = 63/379 (16%), Positives = 127/379 (33%), Gaps = 40/379 (10%)

Query: 217 NSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQL 276
           + +  L+     +  S+  +   ++L +++  +N+L    P   +  + LV + ++ NQ+
Sbjct: 44  DQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 100

Query: 277 WGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLS 336
                   +        ++      T  + L  L+ L  L+L  N++  +   S +++L 
Sbjct: 101 A---DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQ 157

Query: 337 KLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEI 396
           +L + +   +   L                             L    N   L  ++ +I
Sbjct: 158 QLSFGNQVTDLKPLANLTTLERLD--------ISSNKVSDISVLAKLTNLESLIATNNQI 209

Query: 397 SDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVP-PVPGN 455
           SD  P        NL  L+L+ N L+   +    +      +DL++N      P      
Sbjct: 210 SDITPLGIL---TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTK 264

Query: 456 VTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF 515
           +T L L  N+ S         +       +             +   + L  L L  NN 
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLE-----DISPISNLKNLTYLTLYFNNI 319

Query: 516 SGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS 575
           S              +    +L+ +   +NK S    + + + L  +  LS   NQ    
Sbjct: 320 SD----------ISPVSSLTKLQRLFFANNKVSD--VSSLAN-LTNINWLSAGHNQISDL 366

Query: 576 IPRNLCRLSKIQLLDFSLN 594
            P  L  L++I  L  +  
Sbjct: 367 TP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.9 bits (136), Expect = 3e-09
 Identities = 37/169 (21%), Positives = 64/169 (37%), Gaps = 16/169 (9%)

Query: 59  LKLMMALSKNSQNAIITVFNTCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLT 118
           LK +  L+  +    + + N  I  +  L+ L  L     T L +    +S+++    LT
Sbjct: 231 LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKL-----TELKLGANQISNISPLAGLT 285

Query: 119 LLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQIS 178
            L       +            NL  L L  N ++   P    S++T LQ L  + N++S
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFANNKVS 342

Query: 179 AISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGN 227
            +S S  N+  +  L    N ++   P    NL+      +  L L   
Sbjct: 343 DVS-SLANLTNINWLSAGHNQISDLTP--LANLT-----RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.5 bits (135), Expect = 4e-09
 Identities = 69/388 (17%), Positives = 128/388 (32%), Gaps = 37/388 (9%)

Query: 92  DLYLASSTLLSINRPSLSSMNSST---SLTLLDLSSCGLSN-SAYHWLFKISSNLLALDL 147
           D  LA      + + +++   S T    +T L     G+ +     +L    +NL  ++ 
Sbjct: 18  DTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYL----NNLTQINF 73

Query: 148 NSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPEL 207
           ++NQL    P     N+T L  + ++ NQI+ I+               +        + 
Sbjct: 74  SNNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKN 130

Query: 208 FLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDN----------KLDGSFP 257
             NL+    +S  I  +       SL  ++  + + +L    N              S  
Sbjct: 131 LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 190

Query: 258 EKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLD 317
               K + L  L    NQ+    P   +   L  L ++ ++L       L  L+ L  LD
Sbjct: 191 SVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDI--GTLASLTNLTDLD 247

Query: 318 LFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFP 377
           L  N +  +     +S L+KL  +    N ++       L             +      
Sbjct: 248 LANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTNLE----LNENQLEDI 300

Query: 378 KWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPG 437
             + + KN  +L +    ISD  P         L  L  ++N +       +L    +  
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISPVSSL---TKLQRLFFANNKVSDVSSLANLTNINW-- 355

Query: 438 IDLSSNDFEGPVPPVP-GNVTSLNLSNN 464
           +    N      P      +T L L++ 
Sbjct: 356 LSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (151), Expect = 5e-11
 Identities = 52/458 (11%), Positives = 113/458 (24%), Gaps = 18/458 (3%)

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQIS-----AISKSFGNMCGLKTL 193
           S ++ +LD+   +L+          +   Q + L    ++      IS +      L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 194 HLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKL--TGSLPDITEFSSLQELHLFDNK 251
           +L  N L        L         ++ L L    L   G     +   +L  L      
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 252 LDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLS 311
            +       +     ++      +                 +   S L          +S
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKL---QLEYCSLSAASCEPLASVLRAKPDFKELTVS 177

Query: 312 KLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCK 371
             +  +     L   + +S     +         +    +          L  + L   K
Sbjct: 178 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237

Query: 372 LGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLN 431
           LG      L     +    +    I +   +                        +   +
Sbjct: 238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297

Query: 432 YAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLL 491
                  +               + +      + FS  ++    +     S   + D  +
Sbjct: 298 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 357

Query: 492 SGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTI 551
                        L VL LA+ + S +        +  +L   + L+ +D  +N      
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDS----SCSSLAATLLANHSLRELDLSNNCLGDAG 413

Query: 552 PAWIGDTLP----KLAILSLRSNQFHGSIPRNLCRLSK 585
              + +++      L  L L    +   +   L  L K
Sbjct: 414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 3e-06
 Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 10/103 (9%)

Query: 129 NSAYHWLFKISSNLLALDLNSNQLAGPIPDY---AFSNMTALQHLNLSLNQIS-----AI 180
                 L +  S L  L L    ++               +L+ L+LS N +       +
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 181 SKSF-GNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEIL 222
            +S     C L+ L L+D   + ++ +    L    K SL ++
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK-DKPSLRVI 459

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 50/295 (16%), Positives = 92/295 (31%), Gaps = 36/295 (12%)

Query: 289 LTRLDVSDSRLNG--TVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFN 346
           +  LD+S   L     +   L  L  L FL + G +         ++ L++L Y+  +  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 347 SLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWD 406
           +++            L ++   +  L    P  + S  N   +      IS A+P  +  
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 407 LSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKF 466
            S     + +S N L G +     N          +            +  +  +   K 
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 467 SGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGE 526
           S           +  + LD+ +N + G LP  L + + L  LN++ NN  G        E
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--------E 283

Query: 527 IPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLC 581
           IP                              L +  + +  +N+     P   C
Sbjct: 284 IPQGGN--------------------------LQRFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 53.6 bits (127), Expect = 3e-08
 Identities = 56/264 (21%), Positives = 101/264 (38%), Gaps = 7/264 (2%)

Query: 85  TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLA 144
           T    + +L L S   L    P  SS+ +   L  L +                 + L  
Sbjct: 47  TQTYRVNNLDL-SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHY 105

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQL 204
           L +    ++G IPD+     T +            +  S  ++  L  +    N ++G +
Sbjct: 106 LYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165

Query: 205 PELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPS 264
           P+ +    G        + +  N+LTG +P      +L  + L  N L+G     F    
Sbjct: 166 PDSY----GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 265 PLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLE 324
               ++L  N L   L  + +   L  LD+ ++R+ GT+ +GL +L  L  L++  N+L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 325 GMITESHVSNLSKLKYMDFSFNSL 348
           G I +    NL +     ++ N  
Sbjct: 282 GEIPQG--GNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 5/64 (7%)

Query: 194 HLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLD 253
            L +N + G LP+    L       L  L +  N L G +P              +NK  
Sbjct: 250 DLRNNRIYGTLPQGLTQLK-----FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304

Query: 254 GSFP 257
              P
Sbjct: 305 CGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 132 YHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLK 191
                 +S NL  LDL +N++ G +P    + +  L  LN+S N +       GN+    
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294

Query: 192 TLHLFDNNLTGQLPELFLNLSGCS 215
                +N      P     L  C+
Sbjct: 295 VSAYANNKCLCGSP-----LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 62/299 (20%), Positives = 98/299 (32%), Gaps = 43/299 (14%)

Query: 214 CSKNS----LEILKLGGNKLTGSLPDITEFSSLQELHLFD----NKLDGSFPEKFRKPSP 265
           C  ++    +  L L G  L    P  +  ++L  L+       N L G  P    K + 
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 266 LVILNLDGNQLWGSLPDLSVFPF-LTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLE 324
           L  L +    + G++PD       L  LD S + L+GT+   +  L  L  +   GN + 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 325 GMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQK 384
           G I +S+ S       M  S N L       +          +   +        +    
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL---AFVDLSRNMLEGDASVLFGS 219

Query: 385 NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSND 444
           +     I   + S A       LS NL  L+L +N + GT+                   
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL------------------- 260

Query: 445 FEGPVPPVPGNVTSL---NLSNNKFSGPISSLCSISGEYFSYLDVSDN--LLSGELPDC 498
                P     +  L   N+S N   G I    ++    F     ++N  L    LP C
Sbjct: 261 -----PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ--RFDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 49/250 (19%), Positives = 88/250 (35%), Gaps = 16/250 (6%)

Query: 361 QLESIGLLHCKL--GPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSH 418
           ++ ++ L    L      P  L +     FL I                   L+YL ++H
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 419 NHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVT---SLNLSNNKFSGPISSLCS 475
            ++ G + D          +D S N   G +PP   ++     +    N+ SG I     
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 476 ISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCN 535
              + F+ + +S N L+G++P          V    N       + F   +    +    
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 536 ELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNS 595
                       S             L  L LR+N+ +G++P+ L +L  +  L+ S N+
Sbjct: 231 -----------NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 596 ISGAIPKCIN 605
           + G IP+  N
Sbjct: 280 LCGEIPQGGN 289

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 41/182 (22%), Positives = 65/182 (35%), Gaps = 25/182 (13%)

Query: 117 LTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQ 176
           L  L L  CGL        F+  + L  L L  N L     D  F ++  L HL L  N+
Sbjct: 107 LHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPDD-TFRDLGNLTHLFLHGNR 164

Query: 177 ISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGC-------------------SK 216
           IS++ + +F  +  L  L L  N +    P  F +L                        
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224

Query: 217 NSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQL 276
            +L+ L+L  N           ++ LQ+     +++  S P++        +  L  N L
Sbjct: 225 RALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDL 281

Query: 277 WG 278
            G
Sbjct: 282 QG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 8e-08
 Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 11/196 (5%)

Query: 132 YHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI-SKSFGNMCGL 190
               F     L  L L        +    F  + ALQ+L L  N + A+   +F ++  L
Sbjct: 97  DPATFHGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

Query: 191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQELHLFD 249
             L L  N ++      F  L      SL+ L L  N++    P    +   L  L+LF 
Sbjct: 156 THLFLHGNRISSVPERAFRGLH-----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210

Query: 250 NKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGR 309
           N L     E       L  L L+ N          ++ +L +   S S +  ++ +   R
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ---R 267

Query: 310 LSKLEFLDLFGNSLEG 325
           L+  +   L  N L+G
Sbjct: 268 LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 7e-07
 Identities = 48/264 (18%), Positives = 86/264 (32%), Gaps = 15/264 (5%)

Query: 138 ISSNLLALDLNSNQLAGPIPDYAFSNMTALQ-HLNLSLNQISAISKSFGNMCGLKTLHLF 196
           I +    + L+ N+++  +P  +F     L      S       + +F  +  L+ L L 
Sbjct: 30  IPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 197 DNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITE-FSSLQELHLFDNKLDGS 255
           DN     +     +  G     L  L L    L    P +    ++LQ L+L DN L   
Sbjct: 89  DNAQLRSVDPATFHGLGR----LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144

Query: 256 FPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEF 315
             + FR    L  L L GN++         F  L  LD      N            L  
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 316 LDLFGNSL--EGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLG 373
           L            +    ++ L  L+Y+  + N    +     L  + L+       ++ 
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW-LQKFRGSSSEVP 261

Query: 374 PHFPKWLQSQKNYYFLDISDTEIS 397
              P+ L  +       ++  ++ 
Sbjct: 262 CSLPQRLAGRD---LKRLAANDLQ 282

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 47/281 (16%), Positives = 83/281 (29%), Gaps = 14/281 (4%)

Query: 169 HLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK 228
             +     + A+          + + L  N ++      F         ++  L      
Sbjct: 15  TTSCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRAC---RNLTILWLHSNVLA 69

Query: 229 LTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPF 288
              +          Q     + +L    P  F     L  L+LD   L    P L     
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129

Query: 289 -LTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNS 347
            L  L + D+ L     +    L  L  L L GN +  +   +    L  L  +    N 
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR-GLHSLDRLLLHQNR 188

Query: 348 LALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEIS-DAVPSWFWD 406
           +A      +    +L ++ L    L     + L   +   +L ++D     D      W 
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248

Query: 407 LSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEG 447
               L     S + +  +   L    AG     L++ND +G
Sbjct: 249 ---WLQKFRGSSSEVPCS---LPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 42/289 (14%), Positives = 78/289 (26%), Gaps = 42/289 (14%)

Query: 313 LEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKL 372
            + + L GN +  +   S  +  +       S     ++ +         +     + +L
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 373 GPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNY 432
               P         + L +    + +  P  F      L YL L  N L+    D   + 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG-LAALQYLYLQDNALQALPDDTFRDL 152

Query: 433 AGYPGIDLSSNDFEGPVPPVPGNVTSL---NLSNNKFSGPISSLCSISGEYFSYLDVSDN 489
                + L  N            + SL    L  N+ +          G   +   +  N
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL-YLFAN 211

Query: 490 LLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSG 549
            LS    + L   +AL  L L +N +  +               C               
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCD---------------CR-------------- 242

Query: 550 TIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISG 598
                       L      S++   S+P+    L+   L   + N + G
Sbjct: 243 -----ARPLWAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.8 bits (117), Expect = 5e-07
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 15/92 (16%)

Query: 156 IPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCS 215
                     +L+ LN+S N++  +         L+ L    N+L  ++PEL  N     
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLIELPALPPR---LERLIASFNHLA-EVPELPQN----- 325

Query: 216 KNSLEILKLGGNKLTGSLPDITEFSSLQELHL 247
              L+ L +  N L    PDI    S+++L +
Sbjct: 326 ---LKQLHVEYNPLR-EFPDI--PESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 3e-06
 Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 124 SCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKS 183
               S++    L  +  +L  L++++N+L   +P    +    L+ L  S N ++ + + 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LP----ALPPRLERLIASFNHLAEVPEL 322

Query: 184 FGNMCGLKTLHLFDNNLTGQLPELFLNLS 212
             N   LK LH+  N L  + P++  ++ 
Sbjct: 323 PQN---LKQLHVEYNPLR-EFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 53/317 (16%), Positives = 99/317 (31%), Gaps = 15/317 (4%)

Query: 167 LQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSG--CSKNSLEILKL 224
              L L+   +S++ +   +   L++L    N+LT +LPEL  +L       N+L+ L  
Sbjct: 40  AHELELNNLGLSSLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSD 95

Query: 225 GGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLS 284
               L        +   L EL                K  P +  +L+      +  +  
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL 155

Query: 285 VFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFS 344
                     +    N ++ +       LE +    N LE +    ++  L+ +   +  
Sbjct: 156 PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL 215

Query: 345 FNSLALNFSFGWLPPFQLES----IGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAV 400
             +L            +         L          + + S  +    ++     S   
Sbjct: 216 LKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 275

Query: 401 PSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLN 460
                DL P+L  LN+S+N L    L           +  S N     VP +P N+  L+
Sbjct: 276 IRSLCDLPPSLEELNVSNNKL--IELPALPPRLER--LIASFNHLAE-VPELPQNLKQLH 330

Query: 461 LSNNKFSGPISSLCSIS 477
           +  N          S+ 
Sbjct: 331 VEYNPLREFPDIPESVE 347

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 47/331 (14%), Positives = 86/331 (25%), Gaps = 33/331 (9%)

Query: 269 LNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMIT 328
           L L+   L  SLP+L   P L  L  S + L   + E    L  L   +    +L  +  
Sbjct: 43  LELNNLGL-SSLPEL--PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 98

Query: 329 ESHVSNLS-----------KLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFP 377
                 +S              ++               LPP         +        
Sbjct: 99  LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPEL 158

Query: 378 KWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPG 437
           + L      Y  + S  ++ D   S    ++ N     L        +  +  +      
Sbjct: 159 QNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT 218

Query: 438 IDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD 497
           +       E              L  +     +S                 N  S E+  
Sbjct: 219 LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS 278

Query: 498 CLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGD 557
                 +L  LN++NN            E+P    +   L+ + A  N  +      + +
Sbjct: 279 LCDLPPSLEELNVSNNKLI---------ELPALPPR---LERLIASFNHLAE-----VPE 321

Query: 558 TLPKLAILSLRSNQFHGSIPRNLCRLSKIQL 588
               L  L +  N      P     +  +++
Sbjct: 322 LPQNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 12/110 (10%)

Query: 145 LDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQL 204
           L L    L           +  + HL+LS N++ A+  +   +  L+ L   DN L    
Sbjct: 3   LHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 205 PELFLNLSGCSKNSLEILKLGGNKLTG--SLPDITEFSSLQELHLFDNKL 252
                     +   L+ L L  N+L    ++  +     L  L+L  N L
Sbjct: 60  GV-------ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 221 ILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSL 280
           +L L    LT  L  + +   +  L L  N+L    P        L +L    N    ++
Sbjct: 2   VLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNA-LENV 58

Query: 281 PDLSVFPFLTRLDVSDSRLNGTVS-EGLGRLSKLEFLDLFGNSLEG 325
             ++  P L  L + ++RL  + + + L    +L  L+L GNSL  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 4/107 (3%)

Query: 243 QELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGT 302
           + LHL    L  +      +   +  L+L  N+L    P L+    L  L  SD+ L   
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 303 VSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA 349
             +G+  L +L+ L L  N L+       + +  +L  ++   NSL 
Sbjct: 59  --DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 7/112 (6%)

Query: 79  TCIVTITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI 138
           T +  +  L  +  L L S   L    P+L+++     L   D +   +   A     + 
Sbjct: 11  TVLCHLEQLLLVTHLDL-SHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQE 69

Query: 139 SSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGL 190
                 L L +N+L          +   L  LNL  N +         +  +
Sbjct: 70  ------LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 8/109 (7%)

Query: 316 LDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNF-SFGWLPPFQLESIGLLHCKLGP 374
           L L    L  +    H+  L  + ++D S N L     +   L   ++        +   
Sbjct: 3   LHLAHKDLTVL---CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 375 HFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG 423
                         L + +  +  +         P L  LNL  N L  
Sbjct: 60  GVANL----PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 25/192 (13%), Positives = 57/192 (29%), Gaps = 17/192 (8%)

Query: 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNN 199
           +  +  +L    +   +     + + ++  +  + + I ++ +    +  +  L L  N 
Sbjct: 24  AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNK 79

Query: 200 LTGQLPELFLNLSGCSKNSLEILKLGG-----------NKLTGSLPDITEFSSLQELHLF 248
           LT   P   L   G        +K              +     + DI     L +L   
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139

Query: 249 DNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLG 308
               +             +      +     +  L+    L  L +S + +  +    L 
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI--SDLRALA 197

Query: 309 RLSKLEFLDLFG 320
            L  L+ L+LF 
Sbjct: 198 GLKNLDVLELFS 209

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 32/216 (14%), Positives = 67/216 (31%), Gaps = 20/216 (9%)

Query: 140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNN 199
           +N + +    + +   +     +++  +  L+     ++ I      +  L  L L DN 
Sbjct: 19  ANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ 74

Query: 200 LTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEK 259
           +T   P   L      + S   LK              + +S Q   +       +    
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 260 FRKPSPLVI-----------LNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLG 308
           +   + +                 GN     L  L+    LT L   D++++      L 
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISPLA 192

Query: 309 RLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFS 344
            L  L  + L  N +  +     ++N S L  +  +
Sbjct: 193 SLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 33/229 (14%), Positives = 65/229 (28%), Gaps = 22/229 (9%)

Query: 286 FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSF 345
                ++    S +  TV+     L  +  L  FG  +  +     V  L+ L  ++   
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI---EGVQYLNNLIGLELKD 72

Query: 346 NSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFW 405
           N +        L       +     K           +               A  S   
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 406 DLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNK 465
            L  +L  +             L+           ++   +         +T+L   +NK
Sbjct: 133 VLYLDLNQITNISP--------LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 466 FSG--PISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLAN 512
            S   P++SL ++       + + +N +S   P  L     L ++ L N
Sbjct: 185 ISDISPLASLPNL-----IEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 132 YHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLK 191
                   S L  L  + N+++   P    +++  L  ++L  NQIS +S    N   L 
Sbjct: 165 DLTPLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS-PLANTSNLF 220

Query: 192 TLHL 195
            + L
Sbjct: 221 IVTL 224

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 41/286 (14%), Positives = 90/286 (31%), Gaps = 36/286 (12%)

Query: 191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDN 250
           +TL L   NL   +    L+        +   +   + +   L +      +Q + L ++
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQG------VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS 56

Query: 251 KLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRL 310
            ++ S                           LS    L  L +   RL+  +   L + 
Sbjct: 57  VIEVSTLHGI----------------------LSQCSKLQNLSLEGLRLSDPIVNTLAKN 94

Query: 311 SKLEFLDLFGN-SLEGMITESHVSNLSKLKYMDF------SFNSLALNFSFGWLPPFQLE 363
           S L  L+L G         ++ +S+ S+L  ++       +   + +  +       QL 
Sbjct: 95  SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 154

Query: 364 SIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSH-NHLE 422
             G             ++   N   LD+SD+ +        +     L +L+LS    + 
Sbjct: 155 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 214

Query: 423 GTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSG 468
              L           + +     +G +  +   +  L ++ + F+ 
Sbjct: 215 PETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTT 260

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 5e-05
 Identities = 41/251 (16%), Positives = 78/251 (31%), Gaps = 20/251 (7%)

Query: 102 SINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAF 161
           S     L+   S   +  +DLS+  +  S  H +    S L  L L   +L+ PI +   
Sbjct: 33  SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TL 91

Query: 162 SNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEI 221
           +  + L  LNLS     +       +     L   + +      E  + ++    +    
Sbjct: 92  AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS---- 147

Query: 222 LKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP 281
                        +     +L        K D S   +       + L+           
Sbjct: 148 -------------ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 194

Query: 282 DLSVFPFLTRLDVSD-SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKY 340
           +     +L  L +S    +       LG +  L+ L +FG   +G + +     L  L+ 
Sbjct: 195 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL-QLLKEALPHLQI 253

Query: 341 MDFSFNSLALN 351
               F ++A  
Sbjct: 254 NCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 38/260 (14%), Positives = 74/260 (28%), Gaps = 15/260 (5%)

Query: 269 LNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMIT 328
           L+L G  L   +    +   +       S ++  ++E      +++ +DL  + +E    
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTL 63

Query: 329 ESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQK---- 384
              +S  SKL+ +      L+            L  + L  C     F            
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 385 ---NYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLS 441
              N  +      +      +   +    L       N  +  +  L         +DLS
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 442 SNDFEGPVPP----VPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPD 497
            +                +  L+LS      P + L          L V   +  G L  
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 498 CLLRWQALAVLNLANNNFSG 517
                +AL  L +  ++F+ 
Sbjct: 244 LK---EALPHLQINCSHFTT 260

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 6e-05
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 122 LSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAI- 180
           L          H      + L  L+L+ N     +P+  F   +    L++S  +I ++ 
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 181 SKSFGNMCGLKTLHLFDNNLTGQLPEL 207
           S    N+  L+       NL  +LP L
Sbjct: 218 SYGLENLKKLRARST--YNLK-KLPTL 241

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 10/182 (5%)

Query: 97  SSTLLSINRPSLSSM--NSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAG 154
             T +      L  +  +     T L L+   L   +   LF    +L+ L+L  NQL G
Sbjct: 9   EGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 155 PIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGC 214
             P+         +            +K F  +  LKTL+L+DN ++  +P  F +    
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH---- 124

Query: 215 SKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGN 274
             NSL  L L  N    +         L++  L         P K R    + I +L  +
Sbjct: 125 -LNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHS 180

Query: 275 QL 276
           + 
Sbjct: 181 EF 182

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 24/152 (15%), Positives = 46/152 (30%), Gaps = 15/152 (9%)

Query: 172 LSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTG 231
           L+   I   +  + N    + L L    +   +  L   L        + +    N++  
Sbjct: 3   LTAELIEQAA-QYTNAVRDRELDLRGYKIP-VIENLGATLD-----QFDAIDFSDNEIR- 54

Query: 232 SLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTR 291
            L        L+ L + +N++        +    L  L L  N L   L DL     L  
Sbjct: 55  KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKS 113

Query: 292 L------DVSDSRLNGTVSEGLGRLSKLEFLD 317
           L          +         + ++ ++  LD
Sbjct: 114 LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 7e-04
 Identities = 7/40 (17%), Positives = 15/40 (37%)

Query: 161 FSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNL 200
           ++N    + L+L   +I  I      +     +   DN +
Sbjct: 14  YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI 53

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.4 bits (95), Expect = 3e-04
 Identities = 47/346 (13%), Positives = 93/346 (26%), Gaps = 29/346 (8%)

Query: 136 FKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQIS-----AISKSFGNMCGL 190
           F I    L LD  + +    +         +++ + LS N I       +S++  +   L
Sbjct: 3   FSIEGKSLKLDAITTEDEKSVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDN 250
           +     D        E+   L    +  L+  KL   +L+ +    T    L +      
Sbjct: 62  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 121

Query: 251 KLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRL 310
            L+  +                  Q           P L  +    +RL           
Sbjct: 122 PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN--------- 172

Query: 311 SKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHC 370
                +  +  + +       V  +      +   + L    ++                
Sbjct: 173 ---GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 229

Query: 371 KLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSL 430
                    L+S  N   L ++D  +S    +   D    L  + L         L L  
Sbjct: 230 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL-------QTLRLQY 282

Query: 431 NYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSI 476
           N      +       +  +P    ++  L L+ N+FS     +  I
Sbjct: 283 NEIELDAVRTLKTVIDEKMP----DLLFLELNGNRFSEEDDVVDEI 324

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 122 LSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGP----IPDYAFSNMTALQHLNLSLNQI 177
           LS+ G +     +    +  L  L L  N++       +       M  L  L L+ N+ 
Sbjct: 255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

Query: 178 SAISKSFGNMCGLKTLHLFDNNLTGQLPEL 207
           S        +       +F     G+L EL
Sbjct: 315 SEEDDVVDEIRE-----VFSTRGRGELDEL 339

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 5e-04
 Identities = 34/205 (16%), Positives = 59/205 (28%), Gaps = 9/205 (4%)

Query: 264 SPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSL 323
           +  + +N D   L  +LP   +    T L +S++ L       L   ++L  L+L    L
Sbjct: 10  ASHLEVNCDKRNL-TALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 324 EGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQ 383
             +  +  +  L  L        SL L             S   L            + Q
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 384 KNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSN 443
           + Y   +   T     +             L+L++N+L      L         + L  N
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKL-----EKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 444 DFEGPVPPVPG--NVTSLNLSNNKF 466
                     G   +    L  N +
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 31/209 (14%), Positives = 52/209 (24%), Gaps = 23/209 (11%)

Query: 110 SMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQH 169
            ++   S   ++     L+         +  +   L L+ N L            T L  
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPD----LPKDTTILHLSENLLYT-FSLATLMPYTRLTQ 59

Query: 170 LNLS------------------LNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNL 211
           LNL                   L+      +S   +          +    +L  L L  
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 212 SGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNL 271
                   E+   G    T     +T    L++L L +N L             L  L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 272 DGNQLWGSLPDLSVFPFLTRLDVSDSRLN 300
             N L+           L    +  +   
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 28/146 (19%), Positives = 58/146 (39%), Gaps = 5/146 (3%)

Query: 88  ASLRDLYLASSTLLSINR-PSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALD 146
             +   Y  S   L +    S   + +     +L+  S     +    + +    LL+L+
Sbjct: 14  LIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSS--MAATLRIIEENIPELLSLN 71

Query: 147 LNSNQLAGPIP-DYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQL 204
           L++N+L               L+ LNLS N++ +  +        L+ L L  N+L+   
Sbjct: 72  LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF 131

Query: 205 PELFLNLSGCSKNSLEILKLGGNKLT 230
            +    +S   +   ++L+L G++L 
Sbjct: 132 RDQSTYISAIRERFPKLLRLDGHELP 157

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 36/187 (19%), Positives = 61/187 (32%), Gaps = 25/187 (13%)

Query: 136 FKISSNLLALDLNSNQLAGPIP-----DYAFSNMTALQHLNLSLNQISAISKSFGNMCGL 190
           F+   +++A +    +L G IP     D   S + A +HL LS N I  IS S   M  L
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENL 72

Query: 191 KTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDN 250
           + L L  N +        +  +              + +   +     + S  ++     
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKIT---- 128

Query: 251 KLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRL 310
             +    +K      L  L L GN L+    + +                      + RL
Sbjct: 129 --NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV-------------VKRL 173

Query: 311 SKLEFLD 317
             L+ LD
Sbjct: 174 PNLKKLD 180

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 31/192 (16%), Positives = 57/192 (29%), Gaps = 14/192 (7%)

Query: 286 FPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSF 345
                +  +  + +  TVS     L ++  L      ++ +     V  L+ L  ++FS 
Sbjct: 17  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSN 71

Query: 346 NSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFW 405
           N L        L              +  +    +    N   L       +        
Sbjct: 72  NQLTDITPLKNLTKLV-------DILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 124

Query: 406 DLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNK 465
               NL  L LS N +        L          +      P+  +   +  L++S+NK
Sbjct: 125 KNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLT-TLERLDISSNK 183

Query: 466 FSGPISSLCSIS 477
            S  IS L  ++
Sbjct: 184 VSD-ISVLAKLT 194

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	637
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.82
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.5
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.32
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.11
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.99
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.65
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.59

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=8.8e-26  Score=229.98  Aligned_cols=187  Identities=23%  Similarity=0.270  Sum_probs=130.3

Q ss_pred             CCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCC-CCCCCccEEEcccccccCcccccccccCCCccEEeCC
Q 042944          409 PNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVP-PVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVS  487 (637)
Q Consensus       409 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~  487 (637)
                      ++++.+++++|.+++..+  ...+++|+.+++++|.+++... ..+++|+.|++++|++++..+   ....++|+.|+++
T Consensus       197 ~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~  271 (384)
T d2omza2         197 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLG  271 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECC
T ss_pred             cccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCc---ccccccCCEeecc
Confidence            455555555555554332  2344555556666555544321 124566667777766665433   1222788888888


Q ss_pred             CCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEec
Q 042944          488 DNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSL  567 (637)
Q Consensus       488 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L  567 (637)
                      ++.+++..  .+..++.++.+++.+|.+.+         + ..+..+++++.|++++|.++ .++. +. .+++|++|++
T Consensus       272 ~~~l~~~~--~~~~~~~l~~l~~~~n~l~~---------~-~~~~~~~~l~~L~ls~n~l~-~l~~-l~-~l~~L~~L~L  336 (384)
T d2omza2         272 ANQISNIS--PLAGLTALTNLELNENQLED---------I-SPISNLKNLTYLTLYFNNIS-DISP-VS-SLTKLQRLFF  336 (384)
T ss_dssp             SSCCCCCG--GGTTCTTCSEEECCSSCCSC---------C-GGGGGCTTCSEEECCSSCCS-CCGG-GG-GCTTCCEEEC
T ss_pred             CcccCCCC--cccccccccccccccccccc---------c-cccchhcccCeEECCCCCCC-CCcc-cc-cCCCCCEEEC
Confidence            88887432  37778889999999998873         2 23677888999999999987 4443 43 6899999999


Q ss_pred             cCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCe
Q 042944          568 RSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNST  619 (637)
Q Consensus       568 ~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~  619 (637)
                      ++|+++ .++ .+..+++|++|++++|++++..|  +.++++|+.|+|++|.
T Consensus       337 ~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         337 ANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            999988 444 68889999999999999986644  8899999999999873

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=2.4e-25  Score=226.70  Aligned_cols=148  Identities=22%  Similarity=0.297  Sum_probs=88.5

Q ss_pred             ccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEE
Q 042944          380 LQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSL  459 (637)
Q Consensus       380 l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L  459 (637)
                      +..+++|+.+++++|.+.+..+  +. .+++|++|+++++++++..+  +..++.++.+++.                  
T Consensus       237 l~~l~~L~~L~l~~n~l~~~~~--~~-~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~------------------  293 (384)
T d2omza2         237 LASLTNLTDLDLANNQISNLAP--LS-GLTKLTELKLGANQISNISP--LAGLTALTNLELN------------------  293 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GT-TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC------------------
T ss_pred             hhcccccchhccccCccCCCCc--cc-ccccCCEeeccCcccCCCCc--ccccccccccccc------------------
Confidence            4445555555555555554332  11 12556666666555543322  3334444444444                  


Q ss_pred             EcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcE
Q 042944          460 NLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKI  539 (637)
Q Consensus       460 ~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~  539 (637)
                         .|++.+...   ....++++.|++++|.+++..  .+..+++|++|++++|+++         .++ .+..+++|++
T Consensus       294 ---~n~l~~~~~---~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~---------~l~-~l~~l~~L~~  355 (384)
T d2omza2         294 ---ENQLEDISP---ISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS---------DVS-SLANLTNINW  355 (384)
T ss_dssp             ---SSCCSCCGG---GGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC---------CCG-GGGGCTTCCE
T ss_pred             ---ccccccccc---cchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC---------CCh-hHcCCCCCCE
Confidence               444332211   111167777777777777542  3777888888888888887         333 4677888888


Q ss_pred             EEcCCCcccccCChhhhhcCCCCcEEeccCcc
Q 042944          540 IDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQ  571 (637)
Q Consensus       540 L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~  571 (637)
                      |++++|+++ .++. +. ++++|+.|+|++|.
T Consensus       356 L~l~~N~l~-~l~~-l~-~l~~L~~L~L~~Na  384 (384)
T d2omza2         356 LSAGHNQIS-DLTP-LA-NLTRITQLGLNDQA  384 (384)
T ss_dssp             EECCSSCCC-BCGG-GT-TCTTCSEEECCCEE
T ss_pred             EECCCCcCC-CChh-hc-cCCCCCEeeCCCCc
Confidence            888888887 4443 43 68888888888874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=6.5e-25  Score=216.40  Aligned_cols=247  Identities=23%  Similarity=0.389  Sum_probs=181.5

Q ss_pred             ceeEEeccCCcCCC--CccccccCCCCccEEEeeC-CCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCe
Q 042944          361 QLESIGLLHCKLGP--HFPKWLQSQKNYYFLDISD-TEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPG  437 (637)
Q Consensus       361 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~  437 (637)
                      +++.|++.++.+.+  .+|..+..+++|++|++++ |.+.+..|..+..+ ++|++|++++|++.+..+..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L-~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccc-cccchhhhccccccccccccccchhhhcc
Confidence            45556666655544  2456667777777777765 56666666666554 67777777777777666666667777777


Q ss_pred             EeCCCCcCcCCCCCC---CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCcc
Q 042944          438 IDLSSNDFEGPVPPV---PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNN  514 (637)
Q Consensus       438 L~l~~n~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  514 (637)
                      ++++.|.+.+..|..   +++++.+++++|.+.+.++.........++.+++++|++++..+..+..+..+ .+++.++.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            777777766655543   45677777777777766665444433445888888888888888877776544 68888887


Q ss_pred             CCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCC
Q 042944          515 FSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLN  594 (637)
Q Consensus       515 l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n  594 (637)
                      +.        +.+|..+..+++|+.+++++|.+.+.++ .+. .+++|+.|+|++|++++.+|..|.++++|++|+|++|
T Consensus       209 ~~--------~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~-~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         209 LE--------GDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             EE--------ECCGGGCCTTSCCSEEECCSSEECCBGG-GCC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cc--------cccccccccccccccccccccccccccc-ccc-cccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            66        3566777788899999999998875444 454 5889999999999999889999999999999999999


Q ss_pred             cccccccccccccccceeeccCCCee
Q 042944          595 SISGAIPKCINNLTAMVEKASSNSTI  620 (637)
Q Consensus       595 ~l~~~~p~~l~~l~~L~~l~l~~n~l  620 (637)
                      +++|.+|+ +.++++|+.++++||+.
T Consensus       279 ~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         279 NLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             EEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             cccccCCC-cccCCCCCHHHhCCCcc
Confidence            99988884 67889999999999974

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=1e-24  Score=214.92  Aligned_cols=248  Identities=24%  Similarity=0.343  Sum_probs=182.7

Q ss_pred             CCCEEecCCCcCCCccc-hhhhcCCCCCcEEEccC-CcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEE
Q 042944          312 KLEFLDLFGNSLEGMIT-ESHVSNLSKLKYMDFSF-NSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFL  389 (637)
Q Consensus       312 ~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  389 (637)
                      +++.|+++++.+.+..+ ...++++++|++|++++ |.+                        .+.+|..+.++++|++|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l------------------------~g~iP~~i~~L~~L~~L  106 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL------------------------VGPIPPAIAKLTQLHYL  106 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE------------------------ESCCCGGGGGCTTCSEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccc------------------------ccccccccccccccchh
Confidence            45666666666554211 12455566666666654 344                        34556666777777777


Q ss_pred             EeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCC---CCC-ccEEEccccc
Q 042944          390 DISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPV---PGN-VTSLNLSNNK  465 (637)
Q Consensus       390 ~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~-L~~L~L~~n~  465 (637)
                      ++++|++.+..+..+... +.|+.+++++|.+.+..+..+..++.++.+++++|.+.+..|..   +.. ++.+++++|+
T Consensus       107 ~Ls~N~l~~~~~~~~~~~-~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         107 YITHTNVSGAIPDFLSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EEEEECCEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             hhccccccccccccccch-hhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccc
Confidence            777777766555544443 67777777777777666677777777777777777776655543   223 4678888888


Q ss_pred             ccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCC
Q 042944          466 FSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDN  545 (637)
Q Consensus       466 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n  545 (637)
                      +++..+.....  .....++++++...+..|..+..+++++.+++++|.+.         ..+..+..+++|+.|++++|
T Consensus       186 l~~~~~~~~~~--l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~---------~~~~~~~~~~~L~~L~Ls~N  254 (313)
T d1ogqa_         186 LTGKIPPTFAN--LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA---------FDLGKVGLSKNLNGLDLRNN  254 (313)
T ss_dssp             EEEECCGGGGG--CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC---------CBGGGCCCCTTCCEEECCSS
T ss_pred             ccccccccccc--cccccccccccccccccccccccccccccccccccccc---------ccccccccccccccccCccC
Confidence            87766654433  45668999999998889999999999999999999987         33445778899999999999


Q ss_pred             cccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944          546 KFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS  597 (637)
Q Consensus       546 ~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~  597 (637)
                      ++++.+|..+. .+++|++|+|++|++++.+|. +.++++|+.+++++|+..
T Consensus       255 ~l~g~iP~~l~-~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         255 RIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CCEECCCGGGG-GCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEE
T ss_pred             eecccCChHHh-CCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccc
Confidence            99999999988 699999999999999998985 588999999999999854

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=1.2e-22  Score=199.38  Aligned_cols=266  Identities=19%  Similarity=0.184  Sum_probs=130.8

Q ss_pred             CcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccC
Q 042944          266 LVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSF  345 (637)
Q Consensus       266 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  345 (637)
                      .+.++.++..++..++.+  .+.+++|++++|.++...+..|.++++|+.|++++|.+... +...|.++++|+.|++++
T Consensus        12 ~~~~~C~~~~L~~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             TTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCCccCCCC--CCCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccC
Confidence            344444444444333322  24556666666665544444555666666666666665542 223455566666666666


Q ss_pred             CcccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCC--
Q 042944          346 NSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEG--  423 (637)
Q Consensus       346 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~--  423 (637)
                      |+++...                         ..  ....+..|++.+|.+.......+.. ......+++..+....  
T Consensus        89 n~l~~l~-------------------------~~--~~~~l~~L~~~~n~l~~l~~~~~~~-~~~~~~l~~~~n~~~~~~  140 (305)
T d1xkua_          89 NQLKELP-------------------------EK--MPKTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNPLKSSG  140 (305)
T ss_dssp             SCCSBCC-------------------------SS--CCTTCCEEECCSSCCCBBCHHHHTT-CTTCCEEECCSSCCCGGG
T ss_pred             CccCcCc-------------------------cc--hhhhhhhhhccccchhhhhhhhhhc-cccccccccccccccccC
Confidence            6554221                         11  1234455555555554433333222 2455555555554332  


Q ss_pred             cccccccCCCCCCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccC
Q 042944          424 TVLDLSLNYAGYPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQ  503 (637)
Q Consensus       424 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~  503 (637)
                      .....+..++.|+.+++++|.+.......++++++|++++|                         ..+...+..+..++
T Consensus       141 ~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n-------------------------~~~~~~~~~~~~~~  195 (305)
T d1xkua_         141 IENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN-------------------------KITKVDAASLKGLN  195 (305)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTS-------------------------CCCEECTGGGTTCT
T ss_pred             CCccccccccccCccccccCCccccCcccCCccCEEECCCC-------------------------cCCCCChhHhhccc
Confidence            22233445555666666665554433333444444444444                         44444444555555


Q ss_pred             CCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccC------C
Q 042944          504 ALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSI------P  577 (637)
Q Consensus       504 ~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~------~  577 (637)
                      .++.|++++|.+.+        ..+..+..+++|++|++++|.++ .+|.++. .+++|+.|+|++|+|+...      +
T Consensus       196 ~l~~L~~s~n~l~~--------~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~-~l~~L~~L~Ls~N~i~~i~~~~f~~~  265 (305)
T d1xkua_         196 NLAKLGLSFNSISA--------VDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPP  265 (305)
T ss_dssp             TCCEEECCSSCCCE--------ECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             cccccccccccccc--------cccccccccccceeeeccccccc-ccccccc-cccCCCEEECCCCccCccChhhccCc
Confidence            55555555555542        11233444555555555555554 4554444 3555555555555555221      1


Q ss_pred             ccccCCCCCcEeeCCCCccc
Q 042944          578 RNLCRLSKIQLLDFSLNSIS  597 (637)
Q Consensus       578 ~~l~~l~~L~~L~ls~n~l~  597 (637)
                      .....+++|+.|+|++|++.
T Consensus       266 ~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         266 GYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             SCCTTSCCCSEEECCSSSSC
T ss_pred             chhcccCCCCEEECCCCcCc
Confidence            12334566677777777664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=3e-22  Score=196.33  Aligned_cols=222  Identities=22%  Similarity=0.268  Sum_probs=132.3

Q ss_pred             CCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCC
Q 042944           89 SLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQ  168 (637)
Q Consensus        89 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~  168 (637)
                      ..+.++.++.+++.++    ..+.  +++++|+|++|+++...+.++..+ ++|++|++++|.+. .++..+|.++++|+
T Consensus        11 ~~~~~~C~~~~L~~lP----~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l-~~L~~L~l~~n~~~-~i~~~~f~~l~~L~   82 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVP----KDLP--PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKIS-KISPGAFAPLVKLE   82 (305)
T ss_dssp             ETTEEECTTSCCCSCC----CSCC--TTCCEEECCSSCCCCBCTTTTTTC-TTCCEEECCSSCCC-CBCTTTTTTCTTCC
T ss_pred             cCCEEEecCCCCCccC----CCCC--CCCCEEECcCCcCCCcChhHhhcc-cccccccccccccc-ccchhhhhCCCccC
Confidence            5667777777777763    3332  578888888888876555455555 78888888888887 66555788888888


Q ss_pred             EEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEcc
Q 042944          169 HLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLF  248 (637)
Q Consensus       169 ~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~  248 (637)
                      +|++++|+++.+|..  ....++.|++.+|.+....+..+....     ....+....+......               
T Consensus        83 ~L~l~~n~l~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~-----~~~~l~~~~n~~~~~~---------------  140 (305)
T d1xkua_          83 RLYLSKNQLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLN-----QMIVVELGTNPLKSSG---------------  140 (305)
T ss_dssp             EEECCSSCCSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCT-----TCCEEECCSSCCCGGG---------------
T ss_pred             EecccCCccCcCccc--hhhhhhhhhccccchhhhhhhhhhccc-----cccccccccccccccC---------------
Confidence            888888888887654  345777888888877766556665555     6666666665443211               


Q ss_pred             CCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCccc
Q 042944          249 DNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMIT  328 (637)
Q Consensus       249 ~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~  328 (637)
                            .....+..+++|+.+++++|.+......  .+++|++|++++|......+..+..++.++.|++++|.+.+.. 
T Consensus       141 ------~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~-  211 (305)
T d1xkua_         141 ------IENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-  211 (305)
T ss_dssp             ------BCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-
T ss_pred             ------CCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccc-
Confidence                  1122333344444444444444322111  1345555555555555444455555555555555555555422 


Q ss_pred             hhhhcCCCCCcEEEccCCccc
Q 042944          329 ESHVSNLSKLKYMDFSFNSLA  349 (637)
Q Consensus       329 ~~~~~~l~~L~~L~l~~n~~~  349 (637)
                      ...+.++++|++|++++|.++
T Consensus       212 ~~~~~~l~~L~~L~L~~N~L~  232 (305)
T d1xkua_         212 NGSLANTPHLRELHLNNNKLV  232 (305)
T ss_dssp             TTTGGGSTTCCEEECCSSCCS
T ss_pred             cccccccccceeeeccccccc
Confidence            234455555555555555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-20  Score=182.89  Aligned_cols=205  Identities=19%  Similarity=0.155  Sum_probs=102.3

Q ss_pred             CCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCcccccccCCCCCCeEeCCC-CcCcCCCCCCCCCccEEEcc
Q 042944          384 KNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGTVLDLSLNYAGYPGIDLSS-NDFEGPVPPVPGNVTSLNLS  462 (637)
Q Consensus       384 ~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~L~~L~L~  462 (637)
                      +++++|+|++|.++...+..+... ++|++|++++|.+....+..+..+..+..+++.. +.+....+..          
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~----------  100 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT----------  100 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT----------
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcc-ccccccccccccccccccccccccccccccccccccccccccchh----------
Confidence            345566666666654444344333 5566666666666555555555555555554432 2232222221          


Q ss_pred             cccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCC-ccccCCCCCcEEE
Q 042944          463 NNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIP-PSLKKCNELKIID  541 (637)
Q Consensus       463 ~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~~l~~l~~L~~L~  541 (637)
                                  +...++|++|++++|.+....+..+...++|+.+++++|.++         .+| ..+..+++|++|+
T Consensus       101 ------------~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~---------~i~~~~f~~~~~L~~L~  159 (284)
T d1ozna_         101 ------------FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ---------ALPDDTFRDLGNLTHLF  159 (284)
T ss_dssp             ------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC---------CCCTTTTTTCTTCCEEE
T ss_pred             ------------hcccccCCEEecCCcccccccccccchhcccchhhhcccccc---------ccChhHhccccchhhcc
Confidence                        112244555555555554444444445555555555555554         222 2344455555555


Q ss_pred             cCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccccccccccceeeccCCCeeE
Q 042944          542 AGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPKCINNLTAMVEKASSNSTIT  621 (637)
Q Consensus       542 ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~l~l~~n~l~  621 (637)
                      +++|.++ .++...+.++++|+++++++|++++..|..|..+++|++||+++|.+.+..|..|..+++|++|+++||++.
T Consensus       160 l~~N~l~-~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         160 LHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccCccc-ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            5555554 333333334555555555555555444555555555555555555555544455555555555555555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9.9e-21  Score=183.17  Aligned_cols=251  Identities=22%  Similarity=0.219  Sum_probs=150.1

Q ss_pred             cEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhh-hcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccE
Q 042944          143 LALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISK-SFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEI  221 (637)
Q Consensus       143 ~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~  221 (637)
                      ..++.+++.++ .+|. .+  .+++++|+|++|+|+.+|. +|.++++|++|++++|.+....+..+..+.     .++.
T Consensus        14 ~~v~c~~~~L~-~iP~-~i--p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~-----~~~~   84 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPV-GI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA-----LLEQ   84 (284)
T ss_dssp             CEEECCSSCCS-SCCT-TC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT-----TCCE
T ss_pred             eEEEcCCCCCC-ccCC-CC--CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccc-----cccc
Confidence            34567777777 7776 22  2467888888888888764 578888888888888887766556555555     5666


Q ss_pred             EEcC-CCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCC-CCCCCEEEccCCcC
Q 042944          222 LKLG-GNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSV-FPFLTRLDVSDSRL  299 (637)
Q Consensus       222 L~l~-~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n~~  299 (637)
                      +... .+.+.                       ...+..|.++++|++|++++|.+......... .++|+.+++++|.+
T Consensus        85 l~~~~~~~~~-----------------------~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l  141 (284)
T d1ozna_          85 LDLSDNAQLR-----------------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL  141 (284)
T ss_dssp             EECCSCTTCC-----------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cccccccccc-----------------------cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccc
Confidence            5543 22333                       23334444555555555555554433332222 45555555555555


Q ss_pred             CCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCCcccc
Q 042944          300 NGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPHFPKW  379 (637)
Q Consensus       300 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  379 (637)
                      +...+..+..+++|+.|++++|.+.. .+...+.++++|+++++++|.++...+..+..++++++|++++|.+....+.+
T Consensus       142 ~~i~~~~f~~~~~L~~L~l~~N~l~~-l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~  220 (284)
T d1ozna_         142 QALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA  220 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred             cccChhHhccccchhhcccccCcccc-cchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccc
Confidence            54444555566666666666666654 23335666666666666666666555566666666666666666666666677


Q ss_pred             ccCCCCccEEEeeCCCCCCccc-hhhhhcCCCccEEECCCCcCCCcccccc
Q 042944          380 LQSQKNYYFLDISDTEISDAVP-SWFWDLSPNLYYLNLSHNHLEGTVLDLS  429 (637)
Q Consensus       380 l~~~~~L~~L~l~~n~i~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~~~~  429 (637)
                      +..+++|++|++++|.+...-. .++.   ..++.+....+.+....|..+
T Consensus       221 ~~~~~~L~~L~l~~N~l~C~C~~~~l~---~~l~~~~~~~~~~~C~~p~~l  268 (284)
T d1ozna_         221 LAPLRALQYLRLNDNPWVCDCRARPLW---AWLQKFRGSSSEVPCSLPQRL  268 (284)
T ss_dssp             HTTCTTCCEEECCSSCEECSGGGHHHH---HHHHHCCSEECCCBEEESGGG
T ss_pred             cccccccCEEEecCCCCCCCccchHHH---HHHHhCcCCCCceEeCCchHH
Confidence            8888888888888887764422 2222   234444444455554444433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.7e-20  Score=179.30  Aligned_cols=199  Identities=22%  Similarity=0.198  Sum_probs=122.7

Q ss_pred             cCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCC
Q 042944           85 TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNM  164 (637)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l  164 (637)
                      .+...+.+++.++++++.++    +.+.  +++++|+|++|.++...+..+..+ ++|++|++++|.++ .++.  ++.+
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP----~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l-~~L~~L~L~~N~l~-~l~~--~~~l   76 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALP----PDLP--KDTTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELT-KLQV--DGTL   76 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCC----SCCC--TTCCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCC-EEEC--CSCC
T ss_pred             cccCCCeEEEccCCCCCeeC----cCcC--cCCCEEECcCCcCCCcCHHHhhcc-cccccccccccccc-cccc--cccc
Confidence            34556666778887777663    3332  567788888887776555555555 77888888888776 6665  5677


Q ss_pred             CCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCC-cccCCCcc
Q 042944          165 TALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPD-ITEFSSLQ  243 (637)
Q Consensus       165 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~L~  243 (637)
                      ++|++|++++|+++.++..+.++++|++|++++|.+....+..+..+.     +++.|++++|.+...++. +..++.++
T Consensus        77 ~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-----~l~~L~l~~n~l~~l~~~~~~~l~~l~  151 (266)
T d1p9ag_          77 PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-----ELQELYLKGNELKTLPPGLLTPTPKLE  151 (266)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----TCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccccccccccccccccccccccccccccccccccceeecccccccc-----ccccccccccccceeccccccccccch
Confidence            778888888887777777777777777777777777655555555555     666666666665544332 23344555


Q ss_pred             EEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCc
Q 042944          244 ELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSR  298 (637)
Q Consensus       244 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  298 (637)
                      .+++++|.+++..+..|..+++|++|++++|+++..+..++.+++|+.|++++|+
T Consensus       152 ~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             hcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            5555555555444444555555555555555554333333344444444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.3e-19  Score=171.32  Aligned_cols=197  Identities=24%  Similarity=0.210  Sum_probs=119.8

Q ss_pred             CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCc
Q 042944          140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNS  218 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~  218 (637)
                      ..+.+.+.+++.++ .+|. .+.  +++++|+|++|+++.++ ..|.++++|++|++++|.++. ++ .++.++     +
T Consensus        10 ~~~~~v~C~~~~L~-~iP~-~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~-----~   78 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPP-DLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLP-----V   78 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCS-CCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCT-----T
T ss_pred             CCCeEEEccCCCCC-eeCc-CcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccc-----c
Confidence            34556677777777 6765 221  46777777777777765 457777777777777777752 22 233444     6


Q ss_pred             ccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCC-CCCCCEEEccCC
Q 042944          219 LEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSV-FPFLTRLDVSDS  297 (637)
Q Consensus       219 L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~n  297 (637)
                      |++|++++|++......+..+++|+.|+++++.+....+..+..+.+++.+++++|.+....+.... ++.++.+++++|
T Consensus        79 L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_          79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc
Confidence            7777777776665555566666666666666666655555566666666666666666554444333 556666666666


Q ss_pred             cCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCccc
Q 042944          298 RLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLA  349 (637)
Q Consensus       298 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~  349 (637)
                      ++++..+..+..+++|+.|++++|.++. ++. .+..+++|+.|++++|++.
T Consensus       159 ~l~~~~~~~~~~l~~L~~L~Ls~N~L~~-lp~-~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         159 NLTELPAGLLNGLENLDTLLLQENSLYT-IPK-GFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCC-CCT-TTTTTCCCSEEECCSCCBC
T ss_pred             cccccCccccccccccceeecccCCCcc-cCh-hHCCCCCCCEEEecCCCCC
Confidence            6655555555556666666666666553 333 2334555555555555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=9.6e-18  Score=167.58  Aligned_cols=137  Identities=30%  Similarity=0.432  Sum_probs=68.3

Q ss_pred             CCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCccc
Q 042944          141 NLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLE  220 (637)
Q Consensus       141 ~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~  220 (637)
                      ++++|+|+++.++ .+|+    ..++|++|++++|+|+.+|+.   ..+|+.|++++|.++. .+.    ++    +.|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~-l~~----lp----~~L~  101 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSD----LP----PLLE  101 (353)
T ss_dssp             TCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCS----CC----TTCC
T ss_pred             CCCEEEeCCCCCC-CCCC----CCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccch-hhh----hc----cccc
Confidence            4666666666666 5664    245666666666666666543   3456666666665542 111    11    1455


Q ss_pred             EEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCC
Q 042944          221 ILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLN  300 (637)
Q Consensus       221 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~  300 (637)
                      +|++++|.+... +....+++|++|+++++.+... +   .....+..+.+..+... ....+..++.++.+++++|...
T Consensus       102 ~L~L~~n~l~~l-p~~~~l~~L~~L~l~~~~~~~~-~---~~~~~l~~l~~~~~~~~-~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         102 YLGVSNNQLEKL-PELQNSSFLKIIDVDNNSLKKL-P---DLPPSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             EEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCS
T ss_pred             cccccccccccc-cchhhhccceeecccccccccc-c---cccccccchhhcccccc-ccccccccccceeccccccccc
Confidence            666665555532 3344555566666655554421 1   11233444444443332 1222333444555555544433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.82  E-value=7e-18  Score=168.59  Aligned_cols=219  Identities=26%  Similarity=0.337  Sum_probs=145.9

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCC
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTAL  167 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L  167 (637)
                      .++++|+|+++.++.++    +.   .++|++|++++|+++.. |.    ...+|++|++++|.++ .++.  +  .+.|
T Consensus        38 ~~l~~LdLs~~~L~~lp----~~---~~~L~~L~Ls~N~l~~l-p~----~~~~L~~L~l~~n~l~-~l~~--l--p~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLP----EL---PPHLESLVASCNSLTEL-PE----LPQSLKSLLVDNNNLK-ALSD--L--PPLL  100 (353)
T ss_dssp             HTCSEEECTTSCCSCCC----SC---CTTCSEEECCSSCCSSC-CC----CCTTCCEEECCSSCCS-CCCS--C--CTTC
T ss_pred             cCCCEEEeCCCCCCCCC----CC---CCCCCEEECCCCCCccc-cc----chhhhhhhhhhhcccc-hhhh--h--cccc
Confidence            47899999999998763    22   37899999999999843 43    2378999999999987 6664  2  2469


Q ss_pred             CEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEc
Q 042944          168 QHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHL  247 (637)
Q Consensus       168 ~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l  247 (637)
                      ++|++++|.+..+|. ++.+++|++|+++++.+.. .+...   .     .+..+.+..+... ....+..++.++.+++
T Consensus       101 ~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~-~~~~~---~-----~l~~l~~~~~~~~-~~~~l~~l~~l~~L~l  169 (353)
T d1jl5a_         101 EYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKK-LPDLP---P-----SLEFIAAGNNQLE-ELPELQNLPFLTAIYA  169 (353)
T ss_dssp             CEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSC-CCCCC---T-----TCCEEECCSSCCS-SCCCCTTCTTCCEEEC
T ss_pred             ccccccccccccccc-hhhhccceeeccccccccc-ccccc---c-----cccchhhcccccc-ccccccccccceeccc
Confidence            999999999999875 6789999999999988763 22222   2     6777777776655 3445667778888888


Q ss_pred             cCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecCCCcCCCcc
Q 042944          248 FDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLFGNSLEGMI  327 (637)
Q Consensus       248 ~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~  327 (637)
                      .+|...... .   .....+.+....+.+. ..+....++.|+.+++++|..... +   ....++..+.+.++.+... 
T Consensus       170 ~~n~~~~~~-~---~~~~~~~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~-~---~~~~~l~~~~~~~~~~~~~-  239 (353)
T d1jl5a_         170 DNNSLKKLP-D---LPLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTL-P---DLPPSLEALNVRDNYLTDL-  239 (353)
T ss_dssp             CSSCCSSCC-C---CCTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSC-C---SCCTTCCEEECCSSCCSCC-
T ss_pred             ccccccccc-c---cccccccccccccccc-cccccccccccccccccccccccc-c---ccccccccccccccccccc-
Confidence            888765321 1   1223445555555443 344455577788888877765532 2   2345667777777766532 


Q ss_pred             chhhhcCCCCCcEEEccCCcc
Q 042944          328 TESHVSNLSKLKYMDFSFNSL  348 (637)
Q Consensus       328 ~~~~~~~l~~L~~L~l~~n~~  348 (637)
                          ......+...++..+.+
T Consensus       240 ----~~~~~~l~~~~~~~~~~  256 (353)
T d1jl5a_         240 ----PELPQSLTFLDVSENIF  256 (353)
T ss_dssp             ----CCCCTTCCEEECCSSCC
T ss_pred             ----ccccccccccccccccc
Confidence                12234455555554433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.9e-22  Score=204.65  Aligned_cols=110  Identities=25%  Similarity=0.326  Sum_probs=73.3

Q ss_pred             CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCC----CCCchhccCCCCCCEEEcCCCcccc-----hhhhcC
Q 042944          115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAG----PIPDYAFSNMTALQHLNLSLNQISA-----ISKSFG  185 (637)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~----~l~~~~~~~l~~L~~L~L~~n~l~~-----l~~~~~  185 (637)
                      ++|++||++++++++.....+...++++++|+|++|.++.    .+.. ++..+++|++|+|++|.+++     +...+.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~-~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHH-HHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            4689999999999987766666666999999999998861    1222 46778888888888888764     233333


Q ss_pred             -CCCCCcEEEcCCCcCCCCchhH----hhhcccCCCCcccEEEcCCCCCC
Q 042944          186 -NMCGLKTLHLFDNNLTGQLPEL----FLNLSGCSKNSLEILKLGGNKLT  230 (637)
Q Consensus       186 -~l~~L~~L~l~~n~i~~~~~~~----l~~l~~~~~~~L~~L~l~~n~~~  230 (637)
                       ...+|++|++++|.+++.....    +..++     +|++|++++|.+.
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~-----~L~~L~L~~N~i~  125 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLP-----TLQELHLSDNLLG  125 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCT-----TCCEEECCSSBCH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccc-----cccccccccccch
Confidence             2346888888888776443332    23333     5555555555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=5.4e-18  Score=157.68  Aligned_cols=189  Identities=20%  Similarity=0.331  Sum_probs=106.8

Q ss_pred             hcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944           84 ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN  163 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~  163 (637)
                      ++.+.+|++|++.+|.++++     +++..+++|++|++++|.+.+..+  +..+ ++|+++++++|.++ .++.  +.+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l-----~~l~~l~~L~~L~ls~n~i~~~~~--l~~l-~~l~~l~~~~n~~~-~i~~--l~~  105 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTI-----EGVQYLNNLIGLELKDNQITDLAP--LKNL-TKITELELSGNPLK-NVSA--IAG  105 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG--GTTC-CSCCEEECCSCCCS-CCGG--GTT
T ss_pred             HHHcCCcCEEECCCCCCCcc-----hhHhcCCCCcEeecCCceeecccc--cccc-cccccccccccccc-cccc--ccc
Confidence            45566777777777776654     345566777777777777665433  4444 67777777777665 5554  666


Q ss_pred             CCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCcc
Q 042944          164 MTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQ  243 (637)
Q Consensus       164 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~  243 (637)
                      +++|++++++++....++ .+...+.++.+.++++.+...  ..+...+     +|+.|++++|.+.. ...        
T Consensus       106 l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--~~~~~~~-----~L~~L~l~~n~~~~-~~~--------  168 (227)
T d1h6ua2         106 LQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNI--SPLAGLT-----NLQYLSIGNAQVSD-LTP--------  168 (227)
T ss_dssp             CTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCT-----TCCEEECCSSCCCC-CGG--------
T ss_pred             cccccccccccccccccc-hhccccchhhhhchhhhhchh--hhhcccc-----cccccccccccccc-chh--------
Confidence            677777777666665542 345556666666666655321  2233333     55555555554442 222        


Q ss_pred             EEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcCCCCChhhhcCCCCCCEEecC
Q 042944          244 ELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRLNGTVSEGLGRLSKLEFLDLF  319 (637)
Q Consensus       244 ~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  319 (637)
                                      +.++++|+.|++++|++++. +.+..+++|++|++++|++++..  .+.++++|+.|+++
T Consensus       169 ----------------l~~l~~L~~L~Ls~n~l~~l-~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         169 ----------------LANLSKLTTLKADDNKISDI-SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT  225 (227)
T ss_dssp             ----------------GTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred             ----------------hcccccceecccCCCccCCC-hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence                            44455555555555554432 23444556666666666655432  25566666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.2e-20  Score=196.39  Aligned_cols=397  Identities=19%  Similarity=0.174  Sum_probs=213.1

Q ss_pred             CCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHH---hhcCCCcEEECCCCCCCCCCCch----h
Q 042944           88 ASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLF---KISSNLLALDLNSNQLAGPIPDY----A  160 (637)
Q Consensus        88 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~---~~~~~L~~L~L~~n~l~~~l~~~----~  160 (637)
                      ++|++|+++++.+++..  +.+-+..++++++|+|++|.+++.....+.   +.+++|++|+|++|.++ ..+..    .
T Consensus         2 ~~l~~ld~~~~~i~~~~--~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~-~~~~~~l~~~   78 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG-DVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEEESCCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH-HHHHHHHHHT
T ss_pred             CCCCEEEeeCCcCChHH--HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCC-hHHHHHHHHH
Confidence            36888999988888742  123344568888999999988865544333   23388999999988875 32111    1


Q ss_pred             c-cCCCCCCEEEcCCCcccc-----hhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCC--
Q 042944          161 F-SNMTALQHLNLSLNQISA-----ISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGS--  232 (637)
Q Consensus       161 ~-~~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~--  232 (637)
                      + ....+|++|++++|++++     ++..+..+++|++|++++|.+.......+........................  
T Consensus        79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  158 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  158 (460)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhh
Confidence            2 123579999999998875     45677888899999999988764433333221100011233344333332211  


Q ss_pred             ---cCCcccCCCccEEEccCCcCCCCCCC----cC-CCCCCCcEEEcCCCCCCCCC-----CCCCCCCCCCEEEccCCcC
Q 042944          233 ---LPDITEFSSLQELHLFDNKLDGSFPE----KF-RKPSPLVILNLDGNQLWGSL-----PDLSVFPFLTRLDVSDSRL  299 (637)
Q Consensus       233 ---~~~~~~~~~L~~L~l~~n~i~~~~~~----~l-~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~n~~  299 (637)
                         ...+.....++.++++++.+......    .+ ........+++..+.+....     ..+...+.++.+++++|.+
T Consensus       159 ~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~  238 (460)
T d1z7xw1         159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  238 (460)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccc
Confidence               11133445677777777654321100    01 12234556666666553211     1122256777888877765


Q ss_pred             CC-----CChhhhcCCCCCCEEecCCCcCCCccch---hhhcCCCCCcEEEccCCcccccccCC-----CCCCCceeEEe
Q 042944          300 NG-----TVSEGLGRLSKLEFLDLFGNSLEGMITE---SHVSNLSKLKYMDFSFNSLALNFSFG-----WLPPFQLESIG  366 (637)
Q Consensus       300 ~~-----~~~~~l~~l~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~~~~L~~L~  366 (637)
                      ..     ...........++.+++++|.+......   ..+...+.++.+++++|.+.......     ......|+.+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~  318 (460)
T d1z7xw1         239 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW  318 (460)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             cccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccc
Confidence            43     1222334566788888888876543221   22445677788888887775322211     11233556666


Q ss_pred             ccCCcCCCCccc----cccCCCCccEEEeeCCCCCCccchhhhh----cCCCccEEECCCCcCCCcc----cccccCCCC
Q 042944          367 LLHCKLGPHFPK----WLQSQKNYYFLDISDTEISDAVPSWFWD----LSPNLYYLNLSHNHLEGTV----LDLSLNYAG  434 (637)
Q Consensus       367 l~~~~~~~~~~~----~l~~~~~L~~L~l~~n~i~~~~~~~~~~----~~~~L~~L~l~~n~i~~~~----~~~~~~~~~  434 (637)
                      +.+|.+......    .+..+++|++|++++|.+.+.+...++.    ..+.|++|++++|.+++..    ...+..+++
T Consensus       319 l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  398 (460)
T d1z7xw1         319 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  398 (460)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             ccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCC
Confidence            666555433222    2233455666666666555433333221    1234555666655554321    222333444


Q ss_pred             CCeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccc----cccCCCccEEeCCCCCCcccCchhh----hccCCCc
Q 042944          435 YPGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLC----SISGEYFSYLDVSDNLLSGELPDCL----LRWQALA  506 (637)
Q Consensus       435 L~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~l----~~l~~L~  506 (637)
                                           |++|++++|++++......    ......|+.|+++++.+.......+    ...|+|+
T Consensus       399 ---------------------L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~  457 (460)
T d1z7xw1         399 ---------------------LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLR  457 (460)
T ss_dssp             ---------------------CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSE
T ss_pred             ---------------------CCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCE
Confidence                                 5555555555443211111    0111568888888888765443333    3456776


Q ss_pred             EE
Q 042944          507 VL  508 (637)
Q Consensus       507 ~L  508 (637)
                      .|
T Consensus       458 ~~  459 (460)
T d1z7xw1         458 VI  459 (460)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.7e-18  Score=161.11  Aligned_cols=186  Identities=22%  Similarity=0.289  Sum_probs=120.8

Q ss_pred             CCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcc
Q 042944          140 SNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSL  219 (637)
Q Consensus       140 ~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L  219 (637)
                      .+|++|++.+|.++ .++.  +.++++|++|++++|+++.++ .+.++++++++++++|.++. . ..+..++     +|
T Consensus        41 ~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~-----~L  109 (227)
T d1h6ua2          41 DGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKN-V-SAIAGLQ-----SI  109 (227)
T ss_dssp             HTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSC-C-GGGTTCT-----TC
T ss_pred             CCcCEEECCCCCCC-cchh--HhcCCCCcEeecCCceeeccc-cccccccccccccccccccc-c-ccccccc-----cc
Confidence            45555555555554 4432  455555555555555555542 24555555555555555432 1 2344444     55


Q ss_pred             cEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCCCCCCCCCCCEEEccCCcC
Q 042944          220 EILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLPDLSVFPFLTRLDVSDSRL  299 (637)
Q Consensus       220 ~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~~  299 (637)
                      +.+.++++... ....+...+.++.+.++++.+...  ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+
T Consensus       110 ~~l~l~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         110 KTLDLTSTQIT-DVTPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             CEEECTTSCCC-CCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccc-ccchhccccchhhhhchhhhhchh--hhhccccccccccccccccccc-hhhcccccceecccCCCcc
Confidence            55555555544 233355556677777777766532  3466778888888888887643 3466799999999999999


Q ss_pred             CCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccC
Q 042944          300 NGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSF  345 (637)
Q Consensus       300 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  345 (637)
                      ++. + .+..+++|+.|++++|++++. +  .+.++++|+.|++++
T Consensus       186 ~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         186 SDI-S-PLASLPNLIEVHLKNNQISDV-S--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCC-G-GGGGCTTCCEEECTTSCCCBC-G--GGTTCTTCCEEEEEE
T ss_pred             CCC-h-hhcCCCCCCEEECcCCcCCCC-c--ccccCCCCCEEEeeC
Confidence            864 3 378999999999999999874 2  388999999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=6.8e-17  Score=146.50  Aligned_cols=163  Identities=27%  Similarity=0.389  Sum_probs=108.2

Q ss_pred             cCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCC
Q 042944           85 TSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNM  164 (637)
Q Consensus        85 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l  164 (637)
                      ..++++++|+++++.+.++     +++..+++|++|++++|.+++..+  +.++ ++|++|++++|.+. .++.  +.++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l-----~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l-~~L~~L~l~~n~~~-~~~~--l~~l  105 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI-----DGVEYLNNLTQINFSNNQLTDITP--LKNL-TKLVDILMNNNQIA-DITP--LANL  105 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCC-CCGG--GTTC
T ss_pred             HHhcCCCEEECCCCCCCCc-----cccccCCCcCcCccccccccCccc--ccCC-cccccccccccccc-cccc--cccc
Confidence            4567778888888877765     446666788888888887775443  5555 77888888877776 6654  6777


Q ss_pred             CCCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccE
Q 042944          165 TALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQE  244 (637)
Q Consensus       165 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~  244 (637)
                      ++|++|+++++.+..++ .+.++++|+.|++++|++.. . ..+..++     +|+.|++.+|.++. ++.+..+++|++
T Consensus       106 ~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~-----~L~~L~l~~n~l~~-l~~l~~l~~L~~  176 (199)
T d2omxa2         106 TNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISD-I-SALSGLT-----SLQQLNFSSNQVTD-LKPLANLTTLER  176 (199)
T ss_dssp             TTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCT-----TCSEEECCSSCCCC-CGGGTTCTTCCE
T ss_pred             ccccccccccccccccc-ccchhhhhHHhhhhhhhhcc-c-ccccccc-----cccccccccccccC-CccccCCCCCCE
Confidence            77888887777776653 46677777777777777652 2 2455555     77777777776663 334666666666


Q ss_pred             EEccCCcCCCCCCCcCCCCCCCcEE
Q 042944          245 LHLFDNKLDGSFPEKFRKPSPLVIL  269 (637)
Q Consensus       245 L~l~~n~i~~~~~~~l~~l~~L~~L  269 (637)
                      |++++|++++.  ..+..+++|++|
T Consensus       177 L~ls~N~i~~i--~~l~~L~~L~~L  199 (199)
T d2omxa2         177 LDISSNKVSDI--SVLAKLTNLESL  199 (199)
T ss_dssp             EECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             EECCCCCCCCC--ccccCCCCCCcC
Confidence            66666666542  235555555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=5.7e-17  Score=148.33  Aligned_cols=165  Identities=24%  Similarity=0.316  Sum_probs=102.6

Q ss_pred             CCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCC
Q 042944           86 SLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMT  165 (637)
Q Consensus        86 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~  165 (637)
                      .+.+|++|+++++.+.++     .++..+++|++|++++|.+++..+  +..+ ++|++|++++|+++ .++.  +.+++
T Consensus        44 ~L~~L~~L~l~~~~i~~l-----~~l~~l~~L~~L~L~~n~i~~l~~--~~~l-~~L~~L~l~~n~i~-~l~~--l~~l~  112 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKP--LANL-KNLGWLFLDENKVK-DLSS--LKDLK  112 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCC-CGGG--GTTCT
T ss_pred             HhcCccEEECcCCCCCCc-----hhHhhCCCCCEEeCCCccccCccc--cccC-cccccccccccccc-cccc--ccccc
Confidence            455677777777777665     335556777777777777765443  3343 67777777777776 5654  66677


Q ss_pred             CCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEE
Q 042944          166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQEL  245 (637)
Q Consensus       166 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L  245 (637)
                      +|+.|++++|.+..++ .+.++++++.+++++|.+.+  +..+..++     +|+.+++++|.+.. ++.+..+++|++|
T Consensus       113 ~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~--~~~~~~l~-----~L~~l~l~~n~l~~-i~~l~~l~~L~~L  183 (210)
T d1h6ta2         113 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD--ITVLSRLT-----KLDTLSLEDNQISD-IVPLAGLTKLQNL  183 (210)
T ss_dssp             TCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC--CGGGGGCT-----TCSEEECCSSCCCC-CGGGTTCTTCCEE
T ss_pred             cccccccccccccccc-cccccccccccccccccccc--cccccccc-----cccccccccccccc-cccccCCCCCCEE
Confidence            7777777777666653 45666777777777776642  22344455     66666666666653 3335566666666


Q ss_pred             EccCCcCCCCCCCcCCCCCCCcEEEcC
Q 042944          246 HLFDNKLDGSFPEKFRKPSPLVILNLD  272 (637)
Q Consensus       246 ~l~~n~i~~~~~~~l~~l~~L~~L~l~  272 (637)
                      ++++|.+++.  ..+..+++|++|+++
T Consensus       184 ~Ls~N~i~~l--~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         184 YLSKNHISDL--RALAGLKNLDVLELF  208 (210)
T ss_dssp             ECCSSCCCBC--GGGTTCTTCSEEEEE
T ss_pred             ECCCCCCCCC--hhhcCCCCCCEEEcc
Confidence            6666666532  235556666666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=7.7e-17  Score=147.43  Aligned_cols=163  Identities=25%  Similarity=0.319  Sum_probs=100.6

Q ss_pred             CCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEE
Q 042944          114 STSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTL  193 (637)
Q Consensus       114 l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L  193 (637)
                      +.+|++|++++|.+++...  +..+ ++|++|++++|+++ .++.  ++.+++|++|++++|+++.++ .+.++++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~~--l~~l-~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG--IQYL-PNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT--GGGC-TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCchh--HhhC-CCCCEEeCCCcccc-Cccc--cccCccccccccccccccccc-ccccccccccc
Confidence            3677788888887765432  4444 77888888888777 5664  677778888888888777775 47777778888


Q ss_pred             EcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCC
Q 042944          194 HLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDG  273 (637)
Q Consensus       194 ~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~  273 (637)
                      ++++|.+..  ...+..++     +++.+++++|.+.. ......+++|+++++++|.+++.  ..+.++++|++|++++
T Consensus       118 ~l~~~~~~~--~~~l~~l~-----~l~~l~~~~n~l~~-~~~~~~l~~L~~l~l~~n~l~~i--~~l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         118 SLEHNGISD--INGLVHLP-----QLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSK  187 (210)
T ss_dssp             ECTTSCCCC--CGGGGGCT-----TCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCS
T ss_pred             ccccccccc--cccccccc-----cccccccccccccc-ccccccccccccccccccccccc--ccccCCCCCCEEECCC
Confidence            877777642  23455555     67777777766653 33455555666666666665532  1245555555555555


Q ss_pred             CCCCCCCCCCCCCCCCCEEEc
Q 042944          274 NQLWGSLPDLSVFPFLTRLDV  294 (637)
Q Consensus       274 ~~~~~~~~~~~~~~~L~~L~l  294 (637)
                      |++++. +.+..+++|++|++
T Consensus       188 N~i~~l-~~l~~l~~L~~L~L  207 (210)
T d1h6ta2         188 NHISDL-RALAGLKNLDVLEL  207 (210)
T ss_dssp             SCCCBC-GGGTTCTTCSEEEE
T ss_pred             CCCCCC-hhhcCCCCCCEEEc
Confidence            555422 23333444444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.9e-16  Score=140.73  Aligned_cols=79  Identities=28%  Similarity=0.448  Sum_probs=36.8

Q ss_pred             CCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccchhhhcCCCCCCcEEE
Q 042944          115 TSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISAISKSFGNMCGLKTLH  194 (637)
Q Consensus       115 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~  194 (637)
                      +++++|++++|.++...  ++..+ ++|++|++++|.++ .++.  ++++++|++|++++|.+..++ .+.++++|+.|+
T Consensus        40 ~~l~~L~l~~~~i~~l~--~l~~l-~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGIKSID--GVEYL-NNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred             cCCCEEECCCCCCCCcc--ccccC-CCcCcCcccccccc-Cccc--ccCCccccccccccccccccc-cccccccccccc
Confidence            44555555555544321  13333 45555555555554 3333  445555555555555444443 244445555555


Q ss_pred             cCCCcC
Q 042944          195 LFDNNL  200 (637)
Q Consensus       195 l~~n~i  200 (637)
                      +++|..
T Consensus       113 l~~~~~  118 (199)
T d2omxa2         113 LFNNQI  118 (199)
T ss_dssp             CCSSCC
T ss_pred             cccccc
Confidence            544444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=1.9e-16  Score=142.54  Aligned_cols=172  Identities=19%  Similarity=0.162  Sum_probs=128.1

Q ss_pred             CeEeCCCCcCcCCCCCCCCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccCCCcEEeccCccC
Q 042944          436 PGIDLSSNDFEGPVPPVPGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNF  515 (637)
Q Consensus       436 ~~L~l~~n~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  515 (637)
                      +.++.+++.++.+....++++++|+|++|+++..++...+...++|+.|++++|.+....+..+..+++|++|++++|+|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            45667777766554445678888888888887766666655568999999999999888888888899999999999998


Q ss_pred             CCCccccccccCC-ccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCC
Q 042944          516 SGNFLTFFVGEIP-PSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLN  594 (637)
Q Consensus       516 ~~~~~~~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n  594 (637)
                      .         .+| ..+.++++|++|++++|+++ .++...++.+++|++|+|++|++.... ........++.+.+..+
T Consensus        91 ~---------~l~~~~F~~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~~l~L~~N~~~~~~-~~~~~~~~l~~~~l~~~  159 (192)
T d1w8aa_          91 K---------EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNCNC-HLAWFAEWLRKKSLNGG  159 (192)
T ss_dssp             C---------EECSSSSTTCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBCCSG-GGHHHHHHHHHHCCSGG
T ss_pred             c---------ccCHHHHhCCCcccccccCCcccc-ccCHHHhcCCccccccccccccccccc-chHHHhhhhhhhcccCC
Confidence            8         443 35788899999999999997 677666667899999999999886322 21112234666777778


Q ss_pred             cccccccccccccccceeeccCCCeeE
Q 042944          595 SISGAIPKCINNLTAMVEKASSNSTIT  621 (637)
Q Consensus       595 ~l~~~~p~~l~~l~~L~~l~l~~n~l~  621 (637)
                      .++...|..+   ..++.++++.|.++
T Consensus       160 ~~~c~~p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         160 AARCGAPSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             GCBBCSSTTT---TTSBGGGSCTTTCC
T ss_pred             CeEeCCChhh---cCCEeeecCHhhCc
Confidence            7776666554   45667788888774

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.4e-16  Score=144.72  Aligned_cols=198  Identities=12%  Similarity=0.081  Sum_probs=85.6

Q ss_pred             eeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCC-CcCCCcccccccCCCCCCeEeC
Q 042944          362 LESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSH-NHLEGTVLDLSLNYAGYPGIDL  440 (637)
Q Consensus       362 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l  440 (637)
                      +++|++++|.+....+..|.++++|++|++++|.+....+...+..++.++++.+.. |.+....+..+..+++|+.+++
T Consensus        31 l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l  110 (242)
T d1xwdc1          31 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI  110 (242)
T ss_dssp             CSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEE
T ss_pred             CCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccccc
Confidence            333333333333222234455555555555555554433222222234555555432 3444444444455555555555


Q ss_pred             CCCcCcCCCCCC-CCCccEEEcccccccCcccccccccCCCccEEeCCCCCCcccCchhhhccC-CCcEEeccCccCCCC
Q 042944          441 SSNDFEGPVPPV-PGNVTSLNLSNNKFSGPISSLCSISGEYFSYLDVSDNLLSGELPDCLLRWQ-ALAVLNLANNNFSGN  518 (637)
Q Consensus       441 ~~n~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~  518 (637)
                      ++|.+....+.. +..+                      ..+..+..+++.+....+..+.+++ .++.|++++|+++  
T Consensus       111 ~~~~l~~~~~~~~~~~l----------------------~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~--  166 (242)
T d1xwdc1         111 SNTGIKHLPDVHKIHSL----------------------QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--  166 (242)
T ss_dssp             ESCCCCSCCCCTTTCBS----------------------SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--
T ss_pred             chhhhcccccccccccc----------------------cccccccccccccccccccccccccccceeeeccccccc--
Confidence            444443221111 1111                      3333334444444433334444332 4555555555555  


Q ss_pred             ccccccccCCccccCCCCCcEEE-cCCCcccccCChhhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeC
Q 042944          519 FLTFFVGEIPPSLKKCNELKIID-AGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDF  591 (637)
Q Consensus       519 ~~~~~~~~~~~~l~~l~~L~~L~-ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l  591 (637)
                             .++....+.++++++. +++|.++ .+|...++++++|++|+|++|+++...+..|..+++|+.+++
T Consensus       167 -------~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         167 -------EIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             -------EECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             -------ccccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence                   3333333334444332 3444554 455444445555555555555555322333444444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.2e-15  Score=141.47  Aligned_cols=214  Identities=16%  Similarity=0.102  Sum_probs=116.0

Q ss_pred             ccEEEcCCCCCCCCcCCcccCCCccEEEccCCcCCCCCCCcCCCCCCCcEEEcCCCCCCCCCC--CCCCCCCCCEEEccC
Q 042944          219 LEILKLGGNKLTGSLPDITEFSSLQELHLFDNKLDGSFPEKFRKPSPLVILNLDGNQLWGSLP--DLSVFPFLTRLDVSD  296 (637)
Q Consensus       219 L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~  296 (637)
                      .+.++.++..++..++.+.  +++++|++++|.++...+.+|.++++|++|++++|.+...++  .+..++.++++.+..
T Consensus        10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            3566666666665444432  367778888777776555667777778888777777654322  233467777776654


Q ss_pred             -CcCCCCChhhhcCCCCCCEEecCCCcCCCccchhhhcCCCCCcEEEccCCcccccccCCCCCCCceeEEeccCCcCCCC
Q 042944          297 -SRLNGTVSEGLGRLSKLEFLDLFGNSLEGMITESHVSNLSKLKYMDFSFNSLALNFSFGWLPPFQLESIGLLHCKLGPH  375 (637)
Q Consensus       297 -n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  375 (637)
                       +.+....+..+.++++|+.+++++|.+....+...+..+..+..+...++.+.......+..++               
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~---------------  152 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS---------------  152 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSB---------------
T ss_pred             cccccccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccccc---------------
Confidence             4555555566677777777777777765433333334444455555555555443333333221               


Q ss_pred             ccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEE-ECCCCcCCCcccccccCCCCCCeEeCCCCcCcCCCCCCCC
Q 042944          376 FPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYL-NLSHNHLEGTVLDLSLNYAGYPGIDLSSNDFEGPVPPVPG  454 (637)
Q Consensus       376 ~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L-~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~  454 (637)
                              ..++.|++++|++.......+ .. +++.++ .+++|.++......+.++++|+.|++++|+++...+..+.
T Consensus       153 --------~~l~~L~l~~n~l~~i~~~~~-~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~  222 (242)
T d1xwdc1         153 --------FESVILWLNKNGIQEIHNCAF-NG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE  222 (242)
T ss_dssp             --------SSCEEEECCSSCCCEECTTTT-TT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCT
T ss_pred             --------ccceeeecccccccccccccc-cc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHc
Confidence                    234444555554443222221 11 333333 3344455544444455556666666666655544444444


Q ss_pred             CccEE
Q 042944          455 NVTSL  459 (637)
Q Consensus       455 ~L~~L  459 (637)
                      ++..|
T Consensus       223 ~l~~L  227 (242)
T d1xwdc1         223 NLKKL  227 (242)
T ss_dssp             TCCEE
T ss_pred             CCccc
Confidence            44444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.8e-15  Score=140.60  Aligned_cols=248  Identities=19%  Similarity=0.184  Sum_probs=136.2

Q ss_pred             cEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEEEcCCCcccc--hhhhcCCCCCCcEEEc
Q 042944          118 TLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHLNLSLNQISA--ISKSFGNMCGLKTLHL  195 (637)
Q Consensus       118 ~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~l  195 (637)
                      +++|++++.+.......+..  .....+.++...+. .... ......+|++|+++++.+..  +...+.++++|++|++
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~-~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L   78 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMD-QPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL   78 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEEC-SCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             CEEECCCCCCCchHHHHHHh--ccceEeeccccccc-cchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence            57899988776444333332  34677888776654 2222 23456689999999998876  5667889999999999


Q ss_pred             CCCcCCCCchhHhhhcccCCCCcccEEEcCCCC-CCCC-cCC-cccCCCccEEEccCCc-CCCCCCCcCCCCCCCcEEEc
Q 042944          196 FDNNLTGQLPELFLNLSGCSKNSLEILKLGGNK-LTGS-LPD-ITEFSSLQELHLFDNK-LDGSFPEKFRKPSPLVILNL  271 (637)
Q Consensus       196 ~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~-~~~~-~~~-~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~l  271 (637)
                      ++|.+.+..+..+++++     +|++|++++|. +++. ... ...+++|++|++++|. +++..               
T Consensus        79 ~~~~l~~~~~~~l~~~~-----~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~---------------  138 (284)
T d2astb2          79 EGLRLSDPIVNTLAKNS-----NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH---------------  138 (284)
T ss_dssp             TTCBCCHHHHHHHTTCT-----TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH---------------
T ss_pred             cccCCCcHHHHHHhcCC-----CCcCccccccccccccccchhhHHHHhcccccccccccccccc---------------
Confidence            99988766677777666     88888887753 3310 011 1234445555544432 11100               


Q ss_pred             CCCCCCCCCCCCCC-CCCCCEEEccCCc--CCCC-ChhhhcCCCCCCEEecCCCc-CCCccchhhhcCCCCCcEEEccCC
Q 042944          272 DGNQLWGSLPDLSV-FPFLTRLDVSDSR--LNGT-VSEGLGRLSKLEFLDLFGNS-LEGMITESHVSNLSKLKYMDFSFN  346 (637)
Q Consensus       272 ~~~~~~~~~~~~~~-~~~L~~L~l~~n~--~~~~-~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n  346 (637)
                             ....+.. .+.|+.|+++++.  +++. +......+++|++|++++|. +++. ....+..+++|++|++++|
T Consensus       139 -------~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~-~~~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         139 -------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND-CFQEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             -------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG-GGGGGGGCTTCCEEECTTC
T ss_pred             -------chhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCch-hhhhhcccCcCCEEECCCC
Confidence                   0000111 3455555555542  2221 22223456666666666654 3322 2223445555666665553


Q ss_pred             cccccccCCCCCCCceeEEeccCCcCCCCccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCCcCCCc
Q 042944          347 SLALNFSFGWLPPFQLESIGLLHCKLGPHFPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHNHLEGT  424 (637)
Q Consensus       347 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~~  424 (637)
                      .                       .++......+..+++|+.|+++++ +.+.....+...+|+|+   +..+.++..
T Consensus       211 ~-----------------------~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~  261 (284)
T d2astb2         211 Y-----------------------DIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTI  261 (284)
T ss_dssp             T-----------------------TCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCT
T ss_pred             C-----------------------CCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCC
Confidence            2                       122222334556677777777766 55444444444445544   344555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=1.4e-15  Score=136.81  Aligned_cols=172  Identities=27%  Similarity=0.286  Sum_probs=113.6

Q ss_pred             CcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCE
Q 042944           90 LRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQH  169 (637)
Q Consensus        90 L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~  169 (637)
                      .+.++.++++++.++    +.+.  +++++|+|++|+|+...+...+..+++|++|++++|.+. .++...+..+++|++
T Consensus        10 ~~~v~Cs~~~L~~iP----~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~   82 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIP----RDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQE   82 (192)
T ss_dssp             TTEEECTTSCCSSCC----SCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCE
T ss_pred             CCEEEEeCCCcCccC----CCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccce
Confidence            356778888887774    3332  578888888888865443333333388888888888887 666667888888888


Q ss_pred             EEcCCCcccchh-hhcCCCCCCcEEEcCCCcCCCCchhHhhhcccCCCCcccEEEcCCCCCCCCcCCcccCCCccEEEcc
Q 042944          170 LNLSLNQISAIS-KSFGNMCGLKTLHLFDNNLTGQLPELFLNLSGCSKNSLEILKLGGNKLTGSLPDITEFSSLQELHLF  248 (637)
Q Consensus       170 L~L~~n~l~~l~-~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~  248 (637)
                      |++++|+++.++ .+|.++++|++|++++|.+....+.+|..++     +|+++++++|.+........-...++.+.+.
T Consensus        83 L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~-----~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~  157 (192)
T d1w8aa_          83 LQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN-----SLTSLNLASNPFNCNCHLAWFAEWLRKKSLN  157 (192)
T ss_dssp             EECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT-----TCCEEECTTCCBCCSGGGHHHHHHHHHHCCS
T ss_pred             eeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCc-----ccccccccccccccccchHHHhhhhhhhccc
Confidence            888888888874 4678888888888888888877777787777     8888888888776433221111234444555


Q ss_pred             CCcCCCCCCCcCCCCCCCcEEEcCCCCC
Q 042944          249 DNKLDGSFPEKFRKPSPLVILNLDGNQL  276 (637)
Q Consensus       249 ~n~i~~~~~~~l~~l~~L~~L~l~~~~~  276 (637)
                      .+.+....|..+   ..++.++++.+.+
T Consensus       158 ~~~~~c~~p~~l---~~~~l~~L~~n~l  182 (192)
T d1w8aa_         158 GGAARCGAPSKV---RDVQIKDLPHSEF  182 (192)
T ss_dssp             GGGCBBCSSTTT---TTSBGGGSCTTTC
T ss_pred             CCCeEeCCChhh---cCCEeeecCHhhC
Confidence            555543333333   3344445555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-15  Score=144.94  Aligned_cols=83  Identities=18%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             CceeEEeccCCcCCCC-ccccccCCCCccEEEeeCCCCCCccchhhhhcCCCccEEECCCC-cCCCcc-cccccCCCCCC
Q 042944          360 FQLESIGLLHCKLGPH-FPKWLQSQKNYYFLDISDTEISDAVPSWFWDLSPNLYYLNLSHN-HLEGTV-LDLSLNYAGYP  436 (637)
Q Consensus       360 ~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~-~~~~~~~~~L~  436 (637)
                      .+|++|++++|.+... +...+..+++|++|++++|.+.+..+..+... ++|++|++++| .+++.. ......+++|+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~-~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcC-CCCcCccccccccccccccchhhHHHHhcc
Confidence            3455555555544332 23345667777777777777666555555543 67777777764 344322 12234556666


Q ss_pred             eEeCCCC
Q 042944          437 GIDLSSN  443 (637)
Q Consensus       437 ~L~l~~n  443 (637)
                      +|++++|
T Consensus       125 ~L~ls~c  131 (284)
T d2astb2         125 ELNLSWC  131 (284)
T ss_dssp             EEECCCC
T ss_pred             ccccccc
Confidence            6666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.4e-15  Score=126.92  Aligned_cols=122  Identities=15%  Similarity=0.190  Sum_probs=98.7

Q ss_pred             CCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhc
Q 042944          479 EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDT  558 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~  558 (637)
                      ..+++|++++|+++. ++..+..+++|+.|++++|+|+         .+ +.+..+++|++|++++|.++ .++..++..
T Consensus        18 ~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~---------~l-~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~   85 (162)
T d1a9na_          18 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR---------KL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQA   85 (162)
T ss_dssp             TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC---------EE-CCCCCCSSCCEEECCSSCCC-EECSCHHHH
T ss_pred             CcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC---------cc-CCcccCcchhhhhccccccc-CCCcccccc
Confidence            678888888888884 4666778899999999999988         44 24678899999999999998 677666667


Q ss_pred             CCCCcEEeccCccccccCC--ccccCCCCCcEeeCCCCccccccc----ccccccccceeec
Q 042944          559 LPKLAILSLRSNQFHGSIP--RNLCRLSKIQLLDFSLNSISGAIP----KCINNLTAMVEKA  614 (637)
Q Consensus       559 l~~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~ls~n~l~~~~p----~~l~~l~~L~~l~  614 (637)
                      +++|+.|++++|++.. ++  ..+..+++|++|++++|+++. .|    ..+..+++|+.||
T Consensus        86 l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          86 LPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             ccccccceeccccccc-cccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            9999999999999873 33  467888999999999999973 34    3578899999877

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=3.9e-14  Score=116.45  Aligned_cols=118  Identities=23%  Similarity=0.355  Sum_probs=87.5

Q ss_pred             cEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCC
Q 042944          482 SYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPK  561 (637)
Q Consensus       482 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~  561 (637)
                      +.|++++|.++ .++ .+..+++|++|++++|.|+         .+|..+..+++|++|++++|.++ .+|. +. .+++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~---------~lp~~~~~l~~L~~L~l~~N~i~-~l~~-~~-~l~~   66 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR---------ALPPALAALRCLEVLQASDNALE-NVDG-VA-NLPR   66 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC---------CCCGGGGGCTTCCEEECCSSCCC-CCGG-GT-TCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC---------cchhhhhhhhccccccccccccc-ccCc-cc-cccc
Confidence            46788888887 343 4788888889999988888         67777888888999999998887 5654 44 6888


Q ss_pred             CcEEeccCccccccC-CccccCCCCCcEeeCCCCccccc---ccccccccccceee
Q 042944          562 LAILSLRSNQFHGSI-PRNLCRLSKIQLLDFSLNSISGA---IPKCINNLTAMVEK  613 (637)
Q Consensus       562 L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~ls~n~l~~~---~p~~l~~l~~L~~l  613 (637)
                      |++|++++|+++... ...+..+++|+.|++++|++++.   .......+|+|+.+
T Consensus        67 L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          67 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            999999999887332 24677888889999999888632   12233456666654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=3.1e-15  Score=148.34  Aligned_cols=139  Identities=16%  Similarity=0.239  Sum_probs=85.6

Q ss_pred             CCccEEeCCCCCCccc----CchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCccccc----
Q 042944          479 EYFSYLDVSDNLLSGE----LPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGT----  550 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~----  550 (637)
                      +.|+.+++++|.++..    +..++..++.|++|++++|.+......   ..+...+..+++|+.|++++|.+++.    
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~---~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~  234 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE---HLLLEGLAYCQELKVLDLQDNTFTHLGSSA  234 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHH---HHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccc---cchhhhhcchhhhccccccccccccccccc
Confidence            6677777777776643    233455667788888888877632111   11233456677788888888877532    


Q ss_pred             CChhhhhcCCCCcEEeccCcccccc----CCccccC--CCCCcEeeCCCCccccc----cccccc-ccccceeeccCCCe
Q 042944          551 IPAWIGDTLPKLAILSLRSNQFHGS----IPRNLCR--LSKIQLLDFSLNSISGA----IPKCIN-NLTAMVEKASSNST  619 (637)
Q Consensus       551 ~~~~l~~~l~~L~~L~L~~n~~~~~----~~~~l~~--l~~L~~L~ls~n~l~~~----~p~~l~-~l~~L~~l~l~~n~  619 (637)
                      +...+. .+++|++|+|++|.+++.    +-..+..  .+.|++|++++|.+...    +...+. .++.|++|+++||+
T Consensus       235 L~~~l~-~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         235 LAIALK-SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHGG-GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             cccccc-ccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCc
Confidence            222233 577788888888877643    2122222  35688888888877642    233332 46778888888887


Q ss_pred             eE
Q 042944          620 IT  621 (637)
Q Consensus       620 l~  621 (637)
                      +.
T Consensus       314 ~~  315 (344)
T d2ca6a1         314 FS  315 (344)
T ss_dssp             SC
T ss_pred             CC
Confidence            63

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=1.1e-14  Score=144.39  Aligned_cols=43  Identities=16%  Similarity=0.206  Sum_probs=22.5

Q ss_pred             hcCCCCCcEEEcCCCCCCCCCcccc-cccCCCCCccEEECCCCC
Q 042944           84 ITSLASLRDLYLASSTLLSINRPSL-SSMNSSTSLTLLDLSSCG  126 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~l~~L~~L~L~~n~  126 (637)
                      +.....+++|+|++|.+.+.....+ ..+...++|+.|+++++.
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~   70 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF   70 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCc
Confidence            4555666666666665544322121 234455666666666553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.6e-13  Score=112.65  Aligned_cols=101  Identities=27%  Similarity=0.248  Sum_probs=70.2

Q ss_pred             cEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCCCCCEE
Q 042944           91 RDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMTALQHL  170 (637)
Q Consensus        91 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~~L~~L  170 (637)
                      |.|++++|.++.+     +.+..+++|++|++++|.++.. |..+..+ ++|++|++++|.++ .++.  +..+++|++|
T Consensus         1 R~L~Ls~n~l~~l-----~~l~~l~~L~~L~ls~N~l~~l-p~~~~~l-~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLTVL-----CHLEQLLLVTHLDLSHNRLRAL-PPALAAL-RCLEVLQASDNALE-NVDG--VANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCSSC-----CCGGGGTTCCEEECCSSCCCCC-CGGGGGC-TTCCEEECCSSCCC-CCGG--GTTCSSCCEE
T ss_pred             CEEEcCCCCCCCC-----cccccCCCCCEEECCCCccCcc-hhhhhhh-hccccccccccccc-ccCc--cccccccCeE
Confidence            5677777777765     3355667777777777777643 3445555 77777777777776 6654  6777777777


Q ss_pred             EcCCCcccchh--hhcCCCCCCcEEEcCCCcCC
Q 042944          171 NLSLNQISAIS--KSFGNMCGLKTLHLFDNNLT  201 (637)
Q Consensus       171 ~L~~n~l~~l~--~~~~~l~~L~~L~l~~n~i~  201 (637)
                      ++++|++..++  ..+..+++|++|++++|+++
T Consensus        71 ~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          71 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            77777777654  35667777777777777765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.8e-14  Score=122.05  Aligned_cols=127  Identities=17%  Similarity=0.204  Sum_probs=85.8

Q ss_pred             hcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944           84 ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN  163 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~  163 (637)
                      +.+..++++|+|++|+|+.+.    ..+..+++|++|++++|.+....  .+..+ ++|++|++++|.++ .++...+..
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~----~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l-~~L~~L~ls~N~i~-~l~~~~~~~   85 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIE----NLGATLDQFDAIDFSDNEIRKLD--GFPLL-RRLKTLLVNNNRIC-RIGEGLDQA   85 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCC----CGGGGTTCCSEEECCSSCCCEEC--CCCCC-SSCCEEECCSSCCC-EECSCHHHH
T ss_pred             ccCcCcCcEEECCCCCCCccC----ccccccccCCEEECCCCCCCccC--CcccC-cchhhhhccccccc-CCCcccccc
Confidence            456667788888888887763    22344577888888888777542  24444 77888888888877 666655667


Q ss_pred             CCCCCEEEcCCCcccchhh--hcCCCCCCcEEEcCCCcCCCCc---hhHhhhcccCCCCcccEEE
Q 042944          164 MTALQHLNLSLNQISAISK--SFGNMCGLKTLHLFDNNLTGQL---PELFLNLSGCSKNSLEILK  223 (637)
Q Consensus       164 l~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~l~~n~i~~~~---~~~l~~l~~~~~~~L~~L~  223 (637)
                      +++|++|++++|++..++.  .+..+++|++|++++|.++...   +..+..++     +|+.|+
T Consensus        86 l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp-----~L~~LD  145 (162)
T d1a9na_          86 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP-----QVRVLD  145 (162)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT-----TCSEET
T ss_pred             ccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCC-----CcCeeC
Confidence            7788888888887777653  5677778888888887765322   12355555     666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=1.6e-13  Score=123.05  Aligned_cols=121  Identities=18%  Similarity=0.212  Sum_probs=87.1

Q ss_pred             CCccEEeCCCCCCcccCchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhc
Q 042944          479 EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDT  558 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~  558 (637)
                      ++|++|++++|.++. ++ .+..+++|+.|++++|.|+         .+|.....+++|++|++++|.++ .++ .+. .
T Consensus        48 ~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~---------~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~-~  113 (198)
T d1m9la_          48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK---------KIENLDAVADTLEELWISYNQIA-SLS-GIE-K  113 (198)
T ss_dssp             TTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC---------SCSSHHHHHHHCCEEECSEEECC-CHH-HHH-H
T ss_pred             cccceeECcccCCCC-cc-cccCCccccChhhcccccc---------ccccccccccccccccccccccc-ccc-ccc-c
Confidence            777888888887774 33 4778888888888888877         45544445567888888888887 444 344 5


Q ss_pred             CCCCcEEeccCccccccCC--ccccCCCCCcEeeCCCCccccccccc----------ccccccceeec
Q 042944          559 LPKLAILSLRSNQFHGSIP--RNLCRLSKIQLLDFSLNSISGAIPKC----------INNLTAMVEKA  614 (637)
Q Consensus       559 l~~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~ls~n~l~~~~p~~----------l~~l~~L~~l~  614 (637)
                      +++|+.|++++|+++. ++  ..+..+++|+.|++++|++....+..          +..+|+|+.||
T Consensus       114 l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         114 LVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccccchhcc-ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            7888888888888873 33  45778888888888888887544432          56778888775

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=1.1e-13  Score=124.22  Aligned_cols=108  Identities=23%  Similarity=0.325  Sum_probs=74.7

Q ss_pred             hcCCCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCCCCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccC
Q 042944           84 ITSLASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSN  163 (637)
Q Consensus        84 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~  163 (637)
                      +..+++|++|+|++|.++++     +.+..+++|++|++++|.++... . +...+++|++|++++|.++ .++.  +..
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i-----~~l~~l~~L~~L~Ls~N~i~~i~-~-~~~~~~~L~~L~l~~N~i~-~l~~--~~~  113 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKI-----SSLSGMENLRILSLGRNLIKKIE-N-LDAVADTLEELWISYNQIA-SLSG--IEK  113 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCC-----CCHHHHTTCCEEECCEEEECSCS-S-HHHHHHHCCEEECSEEECC-CHHH--HHH
T ss_pred             HhcccccceeECcccCCCCc-----ccccCCccccChhhccccccccc-c-ccccccccccccccccccc-cccc--ccc
Confidence            56677778888887777765     33555677888888877776432 2 3333366778888877776 5543  667


Q ss_pred             CCCCCEEEcCCCcccchh--hhcCCCCCCcEEEcCCCcCC
Q 042944          164 MTALQHLNLSLNQISAIS--KSFGNMCGLKTLHLFDNNLT  201 (637)
Q Consensus       164 l~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~l~~n~i~  201 (637)
                      +++|++|++++|+++.++  ..+..+++|++|++++|++.
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            777788888877777764  35777777777777777654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.1e-11  Score=104.36  Aligned_cols=107  Identities=18%  Similarity=0.122  Sum_probs=83.2

Q ss_pred             CCccEEeCCCCCCcccCchhhhccCCCcEEeccCcc-CCCCccccccccCC-ccccCCCCCcEEEcCCCcccccCChhhh
Q 042944          479 EYFSYLDVSDNLLSGELPDCLLRWQALAVLNLANNN-FSGNFLTFFVGEIP-PSLKKCNELKIIDAGDNKFSGTIPAWIG  556 (637)
Q Consensus       479 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~l~  556 (637)
                      ...+.++.+++.+. ..|..+..+++|++|++++|+ ++         .++ ..+.++++|+.|++++|+++ .++...+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~---------~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f   76 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ---------HLELRDLRGLGELRNLTIVKSGLR-FVAPDAF   76 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC---------EECGGGSCSCCCCSEEECCSSCCC-EECTTGG
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCcccc---------ccCchhhccccccCcceeeccccC-Ccccccc
Confidence            44566888888877 567778888999999997764 66         444 34778899999999999997 6766666


Q ss_pred             hcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCccc
Q 042944          557 DTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSIS  597 (637)
Q Consensus       557 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~  597 (637)
                      ..+++|++|+|++|+++ .+|.......+|+.|+|++|++.
T Consensus        77 ~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          77 HFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             GSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            67899999999999998 55555555557999999999885

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.9e-10  Score=98.25  Aligned_cols=109  Identities=22%  Similarity=0.161  Sum_probs=75.7

Q ss_pred             CCCCcEEEcCCCCCCCCCcccccccCCCCCccEEECCCC-CCCchhhhHHHhhcCCCcEEECCCCCCCCCCCchhccCCC
Q 042944           87 LASLRDLYLASSTLLSINRPSLSSMNSSTSLTLLDLSSC-GLSNSAYHWLFKISSNLLALDLNSNQLAGPIPDYAFSNMT  165 (637)
Q Consensus        87 ~~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~~L~L~~n-~i~~~~~~~~~~~~~~L~~L~L~~n~l~~~l~~~~~~~l~  165 (637)
                      +...+.++.+++.+.+..    ..+..+++|++|++++| .++...+.+|..+ ++|++|++++|+++ .++..+|..++
T Consensus         7 c~~~~~l~c~~~~~~~~p----~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l-~~L~~L~Ls~N~l~-~i~~~~f~~l~   80 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSL----HHLPGAENLTELYIENQQHLQHLELRDLRGL-GELRNLTIVKSGLR-FVAPDAFHFTP   80 (156)
T ss_dssp             CSSSSCEECCSSCCCTTT----TTSCSCSCCSEEECCSCSSCCEECGGGSCSC-CCCSEEECCSSCCC-EECTTGGGSCS
T ss_pred             cCCCCeEEecCCCCccCc----ccccCccccCeeecCCCccccccCchhhccc-cccCcceeeccccC-Ccccccccccc
Confidence            344556777777776652    55666677888888655 4665555555555 77888888888877 77666777888


Q ss_pred             CCCEEEcCCCcccchhhhcCCCCCCcEEEcCCCcCC
Q 042944          166 ALQHLNLSLNQISAISKSFGNMCGLKTLHLFDNNLT  201 (637)
Q Consensus       166 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~l~~n~i~  201 (637)
                      +|++|+|++|+++.+|.......+|+.|++++|.+.
T Consensus        81 ~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             cccceeccCCCCcccChhhhccccccccccCCCccc
Confidence            888888888888877665444456778888777764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=4.5e-09  Score=90.17  Aligned_cols=82  Identities=18%  Similarity=0.227  Sum_probs=40.5

Q ss_pred             cCCCCCcEEEcCCCcccccCCh--hhhhcCCCCcEEeccCccccccCCccccCCCCCcEeeCCCCcccccccc-------
Q 042944          532 KKCNELKIIDAGDNKFSGTIPA--WIGDTLPKLAILSLRSNQFHGSIPRNLCRLSKIQLLDFSLNSISGAIPK-------  602 (637)
Q Consensus       532 ~~l~~L~~L~ls~n~l~~~~~~--~l~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~-------  602 (637)
                      ..+++|++|++++|+++ .++.  ..++.+++|+.|+|++|.++...+........|+.|++++|++.+....       
T Consensus        62 ~~~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCcccc-CCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            34555666666666555 3321  2223456666666666666532221222334556666666666543221       


Q ss_pred             cccccccceeec
Q 042944          603 CINNLTAMVEKA  614 (637)
Q Consensus       603 ~l~~l~~L~~l~  614 (637)
                      .+..+|+|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            244556666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.1e-08  Score=85.84  Aligned_cols=88  Identities=23%  Similarity=0.165  Sum_probs=59.2

Q ss_pred             chhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCChhhhhcCCCCcEEeccCcccccc
Q 042944          496 PDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPAWIGDTLPKLAILSLRSNQFHGS  575 (637)
Q Consensus       496 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~l~~~l~~L~~L~L~~n~~~~~  575 (637)
                      ......+++|++|++++|+|++..      .++..+..+++|+.|++++|.++ .++...+-....|+.|++++|++...
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~------~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLD------DMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCS------GGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCc------hhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcC
Confidence            344456788888888888887321      22344567888888888888887 55543222456788888888888744


Q ss_pred             CC-------ccccCCCCCcEee
Q 042944          576 IP-------RNLCRLSKIQLLD  590 (637)
Q Consensus       576 ~~-------~~l~~l~~L~~L~  590 (637)
                      ..       ..+..+|+|+.||
T Consensus       131 ~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         131 FRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSHHHHHHHHHTTSTTCCEET
T ss_pred             cccchhHHHHHHHHCCCCCEEC
Confidence            32       2255678888887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.11  E-value=5.6e-06  Score=70.69  Aligned_cols=115  Identities=12%  Similarity=0.111  Sum_probs=66.7

Q ss_pred             cCCCCCcEEEcCCC-CCCCCCc-ccccccCCCCCccEEECCCCCCCchhhhHHHhh---cCCCcEEECCCCCCCCCCC--
Q 042944           85 TSLASLRDLYLASS-TLLSINR-PSLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI---SSNLLALDLNSNQLAGPIP--  157 (637)
Q Consensus        85 ~~~~~L~~L~l~~~-~~~~~~~-~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~---~~~L~~L~L~~n~l~~~l~--  157 (637)
                      .+.++|++|+|+++ .+.+... ..+.++...++|++|+|++|.+++.....+.+.   .+.|++|++++|.+.+...  
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            44577888888764 3543211 123456666778888888887775444333322   2667777777777662110  


Q ss_pred             -chhccCCCCCCEEEcCCCcccc--------hhhhcCCCCCCcEEEcCCCc
Q 042944          158 -DYAFSNMTALQHLNLSLNQISA--------ISKSFGNMCGLKTLHLFDNN  199 (637)
Q Consensus       158 -~~~~~~l~~L~~L~L~~n~l~~--------l~~~~~~l~~L~~L~l~~n~  199 (637)
                       ..++...+.|++|++++|++..        +...+...+.|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence             1135556667777777664432        33445556667777665553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.99  E-value=8.3e-07  Score=76.03  Aligned_cols=114  Identities=11%  Similarity=0.123  Sum_probs=63.2

Q ss_pred             CCccEEeCCCC-CCccc----CchhhhccCCCcEEeccCccCCCCccccccccCCccccCCCCCcEEEcCCCcccccCCh
Q 042944          479 EYFSYLDVSDN-LLSGE----LPDCLLRWQALAVLNLANNNFSGNFLTFFVGEIPPSLKKCNELKIIDAGDNKFSGTIPA  553 (637)
Q Consensus       479 ~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~  553 (637)
                      +.|++|+++++ .++..    +..++...+.|++|++++|.+.+....    .+...+...+.|++|++++|.+++....
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~----~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR----GLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT----THHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHH----HHhhhhhhcccccceeeehhhcchHHHH
Confidence            56666666653 34422    234455566777777777776543221    2233445566777777777777633222


Q ss_pred             hhhh---cCCCCcEEeccCccccc-------cCCccccCCCCCcEeeCCCCcc
Q 042944          554 WIGD---TLPKLAILSLRSNQFHG-------SIPRNLCRLSKIQLLDFSLNSI  596 (637)
Q Consensus       554 ~l~~---~l~~L~~L~L~~n~~~~-------~~~~~l~~l~~L~~L~ls~n~l  596 (637)
                      .+++   ..+.|++|++++|.+..       .+...+...++|+.|+++.+..
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            2222   34567777777665431       1334445566777777766543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.65  E-value=1.7e-05  Score=67.58  Aligned_cols=115  Identities=13%  Similarity=0.146  Sum_probs=75.0

Q ss_pred             cCCCCCcEEEcCC-CCCCCCCcc-cccccCCCCCccEEECCCCCCCchhhhHHHhh---cCCCcEEECCCCCCCCCCCc-
Q 042944           85 TSLASLRDLYLAS-STLLSINRP-SLSSMNSSTSLTLLDLSSCGLSNSAYHWLFKI---SSNLLALDLNSNQLAGPIPD-  158 (637)
Q Consensus        85 ~~~~~L~~L~l~~-~~~~~~~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~---~~~L~~L~L~~n~l~~~l~~-  158 (637)
                      .+.+.|++|++++ +.+++.... ...++...++|++|++++|.+++.....+.+.   .+.++.+++++|.+...... 
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4568899999987 345543221 23455677889999999998886655544332   37788888888877522111 


Q ss_pred             --hhccCCCCCCEEEcC--CCcccc-----hhhhcCCCCCCcEEEcCCCc
Q 042944          159 --YAFSNMTALQHLNLS--LNQISA-----ISKSFGNMCGLKTLHLFDNN  199 (637)
Q Consensus       159 --~~~~~l~~L~~L~L~--~n~l~~-----l~~~~~~l~~L~~L~l~~n~  199 (637)
                        .++...++|+.++|+  +|.+.+     +...+...++|+.|+++.+.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence              245667778776554  456654     45566677888888887664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.59  E-value=4.6e-05  Score=64.79  Aligned_cols=111  Identities=13%  Similarity=0.154  Sum_probs=72.6

Q ss_pred             CCCCCccEEECCC-CCCCchhhhHHHh---hcCCCcEEECCCCCCCCCCCc---hhccCCCCCCEEEcCCCcccc-----
Q 042944          112 NSSTSLTLLDLSS-CGLSNSAYHWLFK---ISSNLLALDLNSNQLAGPIPD---YAFSNMTALQHLNLSLNQISA-----  179 (637)
Q Consensus       112 ~~l~~L~~L~L~~-n~i~~~~~~~~~~---~~~~L~~L~L~~n~l~~~l~~---~~~~~l~~L~~L~L~~n~l~~-----  179 (637)
                      .+.+.|++|++++ +.+++.....+.+   ..++|++|++++|.+......   ..+...+.++.+++++|.+..     
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4568999999987 4677665554543   237799999999987622111   145667889999998888765     


Q ss_pred             hhhhcCCCCCCcEEEcC--CCcCCCCc----hhHhhhcccCCCCcccEEEcCCC
Q 042944          180 ISKSFGNMCGLKTLHLF--DNNLTGQL----PELFLNLSGCSKNSLEILKLGGN  227 (637)
Q Consensus       180 l~~~~~~l~~L~~L~l~--~n~i~~~~----~~~l~~l~~~~~~~L~~L~l~~n  227 (637)
                      +...+...++|+.+++.  +|.+....    ...+...+     +|+.|+++.+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~-----~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-----TLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS-----SCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCC-----CcCEEeCcCC
Confidence            45677788888876664  45554322    22333444     6777776554