Citrus Sinensis ID: 042984

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MASSSSSINMIPHTKYDVFLSFREDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSHSIR
Secondary Structure (PSIPRED)
cccccccccccccccccEEcccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcHHccccEEEEEEccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHccccEEEccccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
masssssinmiphtkydvflsfredeispslssaiegskISIVIFSEGYASSRWCLNELVKILEIknkygqivvpvfyrvdpsdvrnqtgtfgdsFSELEERFKEKIDMLQTWRIAMREAanlsgfdshsir
Flexible Loop (DISEMBL)
masssssinmiphTKYDVFLSFREDEISPslssaiegskISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYrvdpsdvrnqtgtfgdsfseLEERFKEKIDMLQTWRIAMReaanlsgfdshsir
Low Complexity Region (SEG)
MASSSSSINMIPHTKYDVFLSFREDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSHSIR
Disordered region (IsUnstruct)
**********IPHTKYDVFLSFRED*******SAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMR**************
Disordered Region (DISOPRED)
**************KYDVFLSFREDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEER****IDMLQTWRIAMREAANLSGFDSHSIR
Disordered Region (DISEMBL)
********NMIPHTKYDVFLSFREDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLS********
Disordered Region (DISPRO)
******SINMIPHTKYDVFLSFREDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSH***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSSSINMIPHTKYDVFLSFREDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSHSIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.833	0.096	0.443	2e-28
O82500	1095	Putative disease resistan	no	no	0.787	0.094	0.491	1e-22
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.772	0.078	0.481	3e-20
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.712	0.228	0.425	2e-16
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.696	0.259	0.391	2e-15
Q9SYC9	571	Vesicle-associated protei	no	no	0.878	0.203	0.315	3e-14
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.878	0.295	0.346	5e-14

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  124 bits (311), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 83/142 (58%), Gaps = 32/142 (22%)

Query: 16  YDVFLSFREDE--------------------------------ISPSLSSAIEGSKISIV 43
           YDVFLSFR ++                                I   L  AIE S+ +IV
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 44  IFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERF 103
           +FSE YA+SRWCLNELVKI+E K ++ Q V+P+FY VDPS VRNQ  +F  +F E E ++
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 104 KEKIDMLQTWRIAMREAANLSG 125
           K+ ++ +Q WRIA+ EAANL G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 75/112 (66%), Gaps = 8/112 (7%)

Query: 20  LSFREDEISPS------LSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIV 73
           ++FR+D I  S      L +AI  SKIS+V+FSE YASS WCL+EL++I++ K + G  V
Sbjct: 40  VTFRDDHIKRSHTIGHELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKV 99

Query: 74  VPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSG 125
           +PVFY+VDPSD+R QTG FG SF  LE    +  +    WR A+ +AAN+ G
Sbjct: 100 MPVFYKVDPSDIRKQTGKFGMSF--LETCCGKTEERQHNWRRALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 69/106 (65%), Gaps = 4/106 (3%)

Query: 23  REDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDP 82
           R   I P L SAI+ S+I+IVIFS+ YASS WCLNELV+I +      Q+V+P+F+ VD 
Sbjct: 49  RSRSIGPELLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDA 108

Query: 83  SDVRNQTGTFGDSFSELEERFKEKI-DMLQTWRIAMREAANLSGFD 127
           S+V+ QTG FG  F   EE  K K  D  Q+W+ A+   A ++G+D
Sbjct: 109 SEVKKQTGEFGKVF---EETCKAKSEDEKQSWKQALAAVAVMAGYD 151

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/94 (42%), Positives = 60/94 (63%)

Query: 30  SLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQT 89
           SL   I  SKI++VIFSEGY  S WC++ELVKI E  ++   I++P+FYR+D   V++ T
Sbjct: 66  SLFDTIGESKIALVIFSEGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLT 125

Query: 90  GTFGDSFSELEERFKEKIDMLQTWRIAMREAANL 123
           G FGD+F +L ++++ +   L  W  A+     L
Sbjct: 126 GKFGDNFWDLVDKYQPEPKKLHKWTEALFSVCEL 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 57/92 (61%)

Query: 35  IEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGD 94
           I+ S++++VIFS+ Y SS WCL+EL +I +  N+ G   +P+FY++ PS V    G FGD
Sbjct: 63  IQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGGFGD 122

Query: 95  SFSELEERFKEKIDMLQTWRIAMREAANLSGF 126
           +F  L+E++K   +  Q W+ A+     L G 
Sbjct: 123 TFRVLKEKYKNDPERTQKWQEALESIPKLKGL 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 30/146 (20%)

Query: 2   ASSSSSINMIPHTKYDVFLSFREDEISPS------------------------------L 31
           A+SS+  + I   +Y VF++FR DE+  S                              L
Sbjct: 344 AASSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLNYL 403

Query: 32  SSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGT 91
              IE S++++ IFSE Y  S WCL+ELVK+ E   +   +VVPVFYR++ +  +   G 
Sbjct: 404 FRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGA 463

Query: 92  FGDSFSELEERFKEKIDMLQTWRIAM 117
           FGD+   LE  ++ + + +Q W+ A+
Sbjct: 464 FGDNLRNLEWEYRSEPERIQKWKEAL 489

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 73/147 (49%), Gaps = 31/147 (21%)

Query: 1   MASSSSSINMIPHTKYDVFLSFREDEIS--------PSLSSA------------------ 34
           MASSSS +   P T   VF+ FR  ++         P+L  A                  
Sbjct: 1   MASSSSVVKPTP-TGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMAN 59

Query: 35  ----IEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTG 90
               IE S++++VIFS  +  S  CLNEL KI E K++   IV+P+FY+V PS V+   G
Sbjct: 60  LLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEG 119

Query: 91  TFGDSFSELEERFKEKIDMLQTWRIAM 117
            FGD+F  LE   +  + + Q W+ A+
Sbjct: 120 KFGDNFRALERNNRHMLPITQKWKEAL 146

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.916	0.107	0.532	2e-36
255564962	1091	TMV resistance protein N, putative [Rici	1.0	0.120	0.475	3e-33
223452603	257	TIR-NBS-LRR type disease resistance prot	0.954	0.490	0.474	6e-33
351725457	250	uncharacterized protein LOC100527494 [Gl	0.954	0.504	0.474	7e-33
224127750	1018	tir-nbs-lrr resistance protein [Populus	0.916	0.118	0.560	2e-32
351722793	299	TIR-NBS-LRR type disease resistance prot	0.833	0.367	0.563	2e-32
356558721	1054	PREDICTED: putative disease resistance p	0.954	0.119	0.471	6e-32
224150338	186	predicted protein [Populus trichocarpa]	0.840	0.596	0.576	6e-32
224144414	520	tir-nbs-lrr resistance protein [Populus	0.818	0.207	0.592	6e-32
351724127	257	TIR-like [Glycine max] gi|225194548|gb|A	0.954	0.490	0.468	2e-31

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/152 (53%), Positives = 99/152 (65%), Gaps = 31/152 (20%)

Query: 12  PHTKYDVFLSFR-ED------------------------------EISPSLSSAIEGSKI 40
           P  KYDVFLSFR ED                              EISPSL  AIE SK+
Sbjct: 11  PQEKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKL 70

Query: 41  SIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELE 100
           S+V+FS+ YASS+WCL EL KILE K   GQ+V+PVFYRVDPS VRNQTG+F D+F+  +
Sbjct: 71  SVVVFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHD 130

Query: 101 ERFKEKIDMLQTWRIAMREAANLSGFDSHSIR 132
           +  KEK++ +  WR AMREAANLSG+DSH+I+
Sbjct: 131 QLLKEKMEKVLNWRAAMREAANLSGWDSHNIK 162

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564962|ref|XP_002523474.1| TMV resistance protein N, putative [Ricinus communis] gi|223537302|gb|EEF38933.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 78/164 (47%), Positives = 100/164 (60%), Gaps = 32/164 (19%)

Query: 1   MASSSSSINMIPHTKYDVFLSFRE--------------------------------DEIS 28
           M   +SS N+ P T YDVFLSFR                                 +EIS
Sbjct: 1   MPPPTSSSNVPPKTSYDVFLSFRGADTRHNLISHLYAALSRKHVTTFIDDHGLDRGEEIS 60

Query: 29  PSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQ 88
           P+L  AIE SKIS++IFSE YASS+WCL+ELVKI+E      + V+PVFY VDPSDVR Q
Sbjct: 61  PTLLKAIEESKISVIIFSENYASSKWCLDELVKIMECMKTMSRNVLPVFYHVDPSDVRKQ 120

Query: 89  TGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSHSIR 132
           TG+FG +F  ++E+FK  +D +Q W  A+ EAANLSG+DS++ R
Sbjct: 121 TGSFGQAFGVVKEKFKGSMDRVQRWSTALTEAANLSGWDSNNYR 164

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223452603|gb|ACM89628.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 104/158 (65%), Gaps = 32/158 (20%)

Query: 1   MASSSSSINMIPHTKYDVFLSFR-ED------------------------------EISP 29
           MA S+SS +  PH K++VFLSFR ED                              EIS 
Sbjct: 1   MAWSTSS-SSTPHQKHEVFLSFRGEDTRYTFTGHLHASLTRLQVNTYIDYNLQRGEEISS 59

Query: 30  SLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQT 89
           SL  AIE +K+S+V+FS+ Y +S+WCL+EL+KILE KN  GQIV+P+FY +DPS VRNQT
Sbjct: 60  SLLRAIEEAKLSVVVFSKNYGNSKWCLDELLKILECKNMRGQIVLPIFYDIDPSHVRNQT 119

Query: 90  GTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFD 127
           GT+ ++F++ E+  + ++D +Q WR+A+REAANLSG+D
Sbjct: 120 GTYAEAFAKHEKHLQGQMDKVQKWRVALREAANLSGWD 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725457|ref|NP_001236837.1| uncharacterized protein LOC100527494 [Glycine max] gi|255632476|gb|ACU16588.1| unknown [Glycine max]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 104/158 (65%), Gaps = 32/158 (20%)

Query: 1   MASSSSSINMIPHTKYDVFLSFR-ED------------------------------EISP 29
           MA S+SS +  PH K++VFLSFR ED                              EIS 
Sbjct: 1   MAWSTSS-SSTPHQKHEVFLSFRGEDTRYTFTGHLHASLTRLQVNTYIDYNLQRGEEISS 59

Query: 30  SLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQT 89
           SL  AIE +K+S+V+FS+ Y +S+WCL+EL+KILE KN  GQIV+P+FY +DPS VRNQT
Sbjct: 60  SLLRAIEEAKLSVVVFSKNYGNSKWCLDELLKILECKNMRGQIVLPIFYDIDPSHVRNQT 119

Query: 90  GTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFD 127
           GT+ ++F++ E+  + ++D +Q WR+A+REAANLSG+D
Sbjct: 120 GTYTEAFAKHEKHLQGQMDKVQKWRVALREAANLSGWD 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127750|ref|XP_002329168.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870949|gb|EEF08080.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 92/132 (69%), Gaps = 11/132 (8%)

Query: 11  IPHTKYDVFLSFRE----------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELV 60
           IP  KYDVF+SFR           DEI  SL  AIE SK+S+++FSE YASS+WCL+ELV
Sbjct: 11  IPARKYDVFISFRGEDTHNNLRRGDEICSSLLKAIEESKLSVIVFSENYASSKWCLDELV 70

Query: 61  KILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREA 120
           KILE K   GQ V+PVFY V+PS VRNQT T GDS  EL E   EK++ ++ WR A++E 
Sbjct: 71  KILECKEMNGQTVIPVFYHVNPSHVRNQTETVGDSIGEL-ELVTEKMEKVKRWRAALKEV 129

Query: 121 ANLSGFDSHSIR 132
           A L+G+DS +IR
Sbjct: 130 ATLTGWDSRNIR 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722793|ref|NP_001237768.1| TIR-NBS-LRR type disease resistance protein [Glycine max] gi|223452578|gb|ACM89616.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 87/110 (79%)

Query: 23  REDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDP 82
           R DEISPSL  AI+ +K+++++FSE YASSRWCL+ELVKI+E K K GQI+VPVFY VDP
Sbjct: 57  RGDEISPSLLRAIDDAKVAVIVFSENYASSRWCLDELVKIMECKRKNGQIIVPVFYHVDP 116

Query: 83  SDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSHSIR 132
           + VR+QTG++G +F+  E+RF   ++ +QTWR+ + E AN+SG+D  + R
Sbjct: 117 THVRHQTGSYGHAFAMHEQRFVGNMNKVQTWRLVLGEVANISGWDCLTTR 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558721|ref|XP_003547651.1| PREDICTED: putative disease resistance protein At4g11170-like [Glycine max]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 75/159 (47%), Positives = 99/159 (62%), Gaps = 33/159 (20%)

Query: 1   MASSSSSINMIPHTKYDVFLSFRE-------------------------------DEISP 29
           + +S + +N  P  KYDVF+SFR                                DE+S 
Sbjct: 29  LVTSFTFLNDTPQIKYDVFVSFRGADIRQGFLSHLIEAFSRKHIAAFVDHNILKGDELSE 88

Query: 30  SLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQT 89
           +L  AI GS IS++IFS+ YASSRWCL ELVKI+E + + GQIVVPVFY+VDPSDVR+Q 
Sbjct: 89  TLLGAINGSLISLIIFSQNYASSRWCLLELVKIVECRKRDGQIVVPVFYKVDPSDVRHQK 148

Query: 90  GTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDS 128
           GT+GD+F++ E +F   +  +QTWR A+ E+ANLSGF S
Sbjct: 149 GTYGDAFAKHEGKF--SLTTIQTWRSALNESANLSGFHS 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224150338|ref|XP_002336941.1| predicted protein [Populus trichocarpa] gi|222837191|gb|EEE75570.1| predicted protein [Populus trichocarpa]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 89/118 (75%), Gaps = 7/118 (5%)

Query: 21  SFRED-------EISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIV 73
           +FR+D       EIS  L  AI+ SKISIV+FS+GYASS WCL+EL KIL+ K+  GQIV
Sbjct: 44  TFRDDDELRIGEEISLQLPKAIQESKISIVVFSKGYASSTWCLDELEKILDCKHTTGQIV 103

Query: 74  VPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSHSI 131
           +PVFY +DPSD+R QTG+F ++F + EERFKE+++ +  WR A+ EAA+LSG D HSI
Sbjct: 104 IPVFYDIDPSDIRKQTGSFAEAFDKHEERFKEEMEKVHKWRKALVEAADLSGLDPHSI 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144414|ref|XP_002325282.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862157|gb|EEE99663.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 64/108 (59%), Positives = 85/108 (78%)

Query: 23  REDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDP 82
           R +EISP L  AIEGS+ISIV+FS+ YASSRWCL+ELVKI+E + K GQ+V+P+FY  +P
Sbjct: 40  RGEEISPQLLKAIEGSRISIVVFSKHYASSRWCLDELVKIIECRQKIGQVVLPIFYDTEP 99

Query: 83  SDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSHS 130
           SDVR QTG++  +F E EERFKE+++ +  WR A+ EA NLSG+  H+
Sbjct: 100 SDVRKQTGSYAKAFDEHEERFKEEMEKVNKWRGALAEAGNLSGWGLHN 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724127|ref|NP_001236023.1| TIR-like [Glycine max] gi|225194548|gb|ACN81802.1| TIR-like protein [Glycine max]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 102/158 (64%), Gaps = 32/158 (20%)

Query: 1   MASSSSSINMIPHTKYDVFLSFR-ED------------------------------EISP 29
           MA S+SS +  PH K++VFLSFR ED                              EIS 
Sbjct: 1   MAWSTSS-SSTPHQKHEVFLSFRGEDTRYTFTGHLHASLTRHQVNTYIDYNLQRGEEISS 59

Query: 30  SLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQT 89
           SL  AIE +K+S+V+FS+ Y +S+WCL+EL+KILE KN  GQIV P+FY +DPS VRNQT
Sbjct: 60  SLLRAIEEAKLSVVVFSKNYGNSKWCLDELLKILECKNMRGQIVWPIFYDIDPSHVRNQT 119

Query: 90  GTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFD 127
           GT+ ++F++ E+  + ++  +Q WR+A+REAANLSG+D
Sbjct: 120 GTYAEAFAKHEKHLQGQMVKVQKWRVALREAANLSGWD 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.75	0.086	0.555	4.5e-28
TAIR|locus:1006230150	313	AT2G20142 [Arabidopsis thalian	0.757	0.319	0.490	2.3e-23
TAIR|locus:1009023443	213	AT5G38344 [Arabidopsis thalian	0.780	0.483	0.449	2.9e-22
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.818	0.090	0.463	3.2e-22
TAIR|locus:2151466	1353	VICTL "VARIATION IN COMPOUND T	0.787	0.076	0.481	8.7e-22
TAIR|locus:2130270	1449	RPP5 "RECOGNITION OF PERONOSPO	0.795	0.072	0.532	4.2e-21
TAIR|locus:2098145	1240	AT3G44630 [Arabidopsis thalian	0.818	0.087	0.454	5.5e-21
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.787	0.084	0.509	6.6e-21
TAIR|locus:2155801	1046	AT5G58120 [Arabidopsis thalian	0.757	0.095	0.490	8.6e-21
TAIR|locus:2129236	1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.772	0.078	0.481	1.6e-20

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 296 (109.3 bits), Expect = 4.5e-28, Sum P(2) = 4.5e-28
 Identities = 55/99 (55%), Positives = 73/99 (73%)

Query:    27 ISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVR 86
             I   L  AIE S+ +IV+FSE YA+SRWCLNELVKI+E K ++ Q V+P+FY VDPS VR
Sbjct:    55 IPGELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVR 114

Query:    87 NQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSG 125
             NQ  +F  +F E E ++K+ ++ +Q WRIA+ EAANL G
Sbjct:   115 NQKESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:1006230150 AT2G20142 [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 51/104 (49%), Positives = 72/104 (69%)

Query:    25 DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSD 84
             DE       AIE SKIS+++FSE +  SRWCL+E+V IL+ K K+GQIV+PV Y VDP D
Sbjct:    48 DERYEESLKAIEVSKISVIVFSENFGDSRWCLDEVVAILKCKEKFGQIVIPVLYHVDPLD 107

Query:    85 VRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDS 128
             + NQTG+FGD+F++     ++K + LQ W+ +  EA NL G+ +
Sbjct:   108 IENQTGSFGDAFAKR----RDKAEQLQEWKDSFTEAINLPGWST 147

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:1009023443 AT5G38344 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
 Identities = 49/109 (44%), Positives = 70/109 (64%)

Query:    23 REDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDP 82
             R   I P L  AI GSKI+IV+ S  YASS WCLNELV+I++ + + GQ V+ +FY VDP
Sbjct:    98 RSKSIGPELIEAIRGSKIAIVLLSRNYASSSWCLNELVEIMKCREQLGQTVMTIFYDVDP 157

Query:    83 SDVRNQTGTFGDSFSEL-EERFKEKIDMLQTWRIAMREAANLSGFDSHS 130
             +DV+ QTG FG  F +  + + KE+I   + W+  + + A ++G   HS
Sbjct:   158 TDVKKQTGDFGKVFKKTCKGKPKEEI---KRWQKVLEDVATIAG--EHS 201

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
 Identities = 51/110 (46%), Positives = 75/110 (68%)

Query:    23 REDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDP 82
             R   I P L  AI+GSKI+IV+ S  YASS WCL+EL +I++ +   GQIV+ +FY VDP
Sbjct:   136 RSKSIGPELKEAIKGSKIAIVLLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVDP 195

Query:    83 SDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSHSIR 132
             +D++ QTG FG +F++   R K K + ++ WR A+ + A ++G+ SHS R
Sbjct:   196 TDIKKQTGEFGKAFTKTC-RGKPK-EQVERWRKALEDVATIAGYHSHSWR 243

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2151466 VICTL "VARIATION IN COMPOUND TRIGGERED ROOT growth response-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 8.7e-22, P = 8.7e-22
 Identities = 51/106 (48%), Positives = 75/106 (70%)

Query:    23 REDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDP 82
             R   + P L  AI  S+I++V+FS+ YASS WCLNEL++I++ K ++GQ+V+P+FY +DP
Sbjct:    46 RSQSLDPMLKQAIRDSRIALVVFSKNYASSSWCLNELLEIVKCKEEFGQMVIPIFYCLDP 105

Query:    83 SDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDS 128
             S VR+Q G FG +F E   R  E+ + +Q W  A+ + ANL+GFDS
Sbjct:   106 SHVRHQDGDFGKNFEETCGRNTEE-EKIQ-WEKALTDVANLAGFDS 149

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 4.2e-21, P = 4.2e-21
 Identities = 57/107 (53%), Positives = 72/107 (67%)

Query:    23 REDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDP 82
             R   I+P L SAI  ++ISIVIFS+ YASS WCLNELV+I +  N  GQ+V+PVFY VDP
Sbjct:    50 RSRTIAPELISAIREARISIVIFSKNYASSTWCLNELVEIHKCFNDLGQMVIPVFYDVDP 109

Query:    83 SDVRNQTGTFGDSFSELEERFKEKI--DMLQTWRIAMREAANLSGFD 127
             S+VR QTG FG  F +  E  K+K   D  Q W  A+ + AN++G D
Sbjct:   110 SEVRKQTGEFGKVFEKTCEVSKDKQPGDQKQRWVQALTDIANIAGED 156

GO:0000166 "nucleotide binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 5.5e-21, P = 5.5e-21
 Identities = 50/110 (45%), Positives = 75/110 (68%)

Query:    23 REDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDP 82
             R   I P L  AI+GSKI+IV+ S  YASS WCL+EL +I++ +   GQIV+ +FY V+P
Sbjct:   132 RSKSIGPELKEAIKGSKIAIVLLSRKYASSSWCLDELAEIMKCRQMVGQIVMTIFYEVEP 191

Query:    83 SDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSHSIR 132
             +D++ QTG FG +F++   R K K + ++ WR A+ + A ++G+ SHS R
Sbjct:   192 TDIKKQTGEFGKAFTKTC-RGKPK-EQVERWRKALEDVATIAGYHSHSWR 239

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
 Identities = 54/106 (50%), Positives = 68/106 (64%)

Query:    23 REDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDP 82
             R   I+P L SAI  S ISIV+FS+ YASS WCLNELV+I +   +  QIV+P+FY VDP
Sbjct:    49 RSHAIAPDLLSAINNSMISIVVFSKKYASSTWCLNELVEIHKCYKELTQIVIPIFYEVDP 108

Query:    83 SDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDS 128
             SDVR QT  FG+ F        E  D+ Q W  A+ E A+++G DS
Sbjct:   109 SDVRKQTREFGEFFKVTCVGKTE--DVKQQWIEALEEVASIAGHDS 152

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2155801 AT5G58120 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 8.6e-21, Sum P(2) = 8.6e-21
 Identities = 51/104 (49%), Positives = 72/104 (69%)

Query:    23 REDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDP 82
             R   I P+L+ AI+ S+ISIV+ S+ YASSRWCL+EL++IL+ +   GQIV+ VFY VDP
Sbjct:    53 RSQTIVPALTGAIKESRISIVVLSKNYASSRWCLDELLEILKCREDIGQIVMTVFYGVDP 112

Query:    83 SDVRNQTGTFGDSFSEL-EERFKEKIDMLQTWRIAMREAANLSG 125
             SDVR QTG FG +F++  E +  E+    Q W  A+ +  N++G
Sbjct:   113 SDVRKQTGEFGIAFNKTCEGKTNEET---QKWSKALNDVGNIAG 153

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
 Identities = 51/106 (48%), Positives = 69/106 (65%)

Query:    23 REDEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDP 82
             R   I P L SAI+ S+I+IVIFS+ YASS WCLNELV+I +      Q+V+P+F+ VD 
Sbjct:    49 RSRSIGPELLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDA 108

Query:    83 SDVRNQTGTFGDSFSELEERFKEKI-DMLQTWRIAMREAANLSGFD 127
             S+V+ QTG FG  F   EE  K K  D  Q+W+ A+   A ++G+D
Sbjct:   109 SEVKKQTGEFGKVF---EETCKAKSEDEKQSWKQALAAVAVMAGYD 151

GO:0000166 "nucleotide binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=NAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IGI;IMP

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01250017 tir-nbs-lrr resistance protein (1125 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-29
pfam01582	135	pfam01582, TIR, TIR domain	6e-28
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	1e-24
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	2e-08
pfam13676	102	pfam13676, TIR_2, TIR domain	3e-05

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  111 bits (280), Expect = 1e-29
 Identities = 60/159 (37%), Positives = 84/159 (52%), Gaps = 37/159 (23%)

Query: 1   MASSSSSINMIPHTKYDVFLSF-------------------------------REDEISP 29
            +SSSSS N +    YDVF SF                               R   + P
Sbjct: 2   ASSSSSSRNWV----YDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDP 57

Query: 30  SLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQT 89
            L  AI  S+I++V+FS+ YASS WCLNEL++I+  K + GQ+V+PVFY +DPS VR QT
Sbjct: 58  ELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQT 117

Query: 90  GTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDS 128
           G FG++F +  +   E  D    W+ A+ + AN+ G+ S
Sbjct: 118 GDFGEAFEKTCQNKTE--DEKIQWKQALTDVANILGYHS 154

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 99.3 bits (248), Expect = 6e-28
 Identities = 43/112 (38%), Positives = 70/112 (62%), Gaps = 6/112 (5%)

Query: 13  HTKYDVFLSFREDE----ISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNK 68
                + +  R++     I  +L  AIE S+ +IVIFS  YASS WCL+ELV+I++   +
Sbjct: 24  EKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIFSSNYASSEWCLDELVEIVKCALE 83

Query: 69  YG--QIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMR 118
            G  ++++P+FY+VDPSDVR Q+G FG +F +  +   +K D ++ W+ A+ 
Sbjct: 84  GGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWSGDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 90.8 bits (226), Expect = 1e-24
 Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 33/141 (23%)

Query: 15  KYDVFLSFREDE-------------------------------ISPSLSSAIEGSKISIV 43
           +YDVF+S+   E                                   +  AIE S+I+IV
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIV 60

Query: 44  IFSEGYASSRWCLNELVKILEIKNKYGQI-VVPVFYRVDPSDVRNQTGTFGDSFSELEER 102
           + S  YA S WCL+ELV  LE   + G + V+P+FY V PSDVR Q G F   F +   +
Sbjct: 61  VLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYLK 120

Query: 103 FKEKIDMLQTWRIAMREAANL 123
           + E  +  Q W+ A+    + 
Sbjct: 121 WPED-EKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 18/106 (16%)

Query: 25  DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSD 84
           D++   ++SAI   K+ + +FS  Y  S +CL+EL  I+E K +    V+P+F  V PS 
Sbjct: 68  DKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQ 123

Query: 85  VRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSG--FDS 128
           +R            + +      + ++ +  A+ EA    G  FDS
Sbjct: 124 LR------------VVDNGTCPDEEIRRFNWALEEAKYTVGLTFDS 157

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 16 YDVFLSFRE---DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQI 72
            V+L +     ++    +  A+  + + +V+ S  Y +S WC  E    LE     G+ 
Sbjct: 25 IRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLSPAYLASPWCRAEWGAALER----GKR 80

Query: 73 VVPVFYRVDPSDV 85
          ++PV  R++  ++
Sbjct: 81 LIPV--RLEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN03194	187	putative disease resistance protein; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.82
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.81
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	98.89
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.83
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	97.63
PF09441	175	Abp2: ARS binding protein 2; InterPro: IPR018562 T	82.16

>PLN03210 Resistant to P

Probab=100.00  E-value=2e-41  Score=310.30  Aligned_cols=127  Identities=46%  Similarity=0.795  Sum_probs=116.8

Q ss_pred             CCCCCCCCCCCCCCceeEEEeccC-------------------------------CCcchHHHHHhhhccceEEEeecCc
Q 042984            1 MASSSSSINMIPHTKYDVFLSFRE-------------------------------DEISPSLSSAIEGSKISIVIFSEGY   49 (132)
Q Consensus         1 m~~~s~~~~~~~~~~ydVFlsfrg-------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y   49 (132)
                      ||+|||++   +.++|||||||||                               +.|+++|++||++|+++|||||+||
T Consensus         1 ~~~~~~~~---~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~y   77 (1153)
T PLN03210          1 MASSSSSS---RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNY   77 (1153)
T ss_pred             CCCCCCCC---CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCc
Confidence            67776553   4589999999999                               5688999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHhcCCeeeeEEeecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccC
Q 042984           50 ASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSH  129 (132)
Q Consensus        50 ~~S~wCl~EL~~i~~~~~~~~~~viPIfy~v~ps~V~~q~g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~  129 (132)
                      |+|.|||+||++|++|+++.++.|+||||+|+|+|||+|+|.||++|.+++++.  ++|++++||+||++|++++||+++
T Consensus        78 a~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~  155 (1153)
T PLN03210         78 ASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQ  155 (1153)
T ss_pred             ccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecC
Confidence            999999999999999999999999999999999999999999999999988753  478999999999999999999987


Q ss_pred             CCC
Q 042984          130 SIR  132 (132)
Q Consensus       130 ~~~  132 (132)
                      +++
T Consensus       156 ~~~  158 (1153)
T PLN03210        156 NWP  158 (1153)
T ss_pred             CCC
Confidence            764

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=2e-37  Score=234.87  Aligned_cols=100  Identities=33%  Similarity=0.565  Sum_probs=90.0

Q ss_pred             CCceeEEEeccC--------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHHHH
Q 042984           13 HTKYDVFLSFRE--------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELV   60 (132)
Q Consensus        13 ~~~ydVFlsfrg--------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~   60 (132)
                      ..+|||||||||                                +.|.+.|.+||++|+++|+|||++|++|.|||+||+
T Consensus        24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~  103 (187)
T PLN03194         24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELA  103 (187)
T ss_pred             CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHH
Confidence            368999999999                                567789999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCeeeeEEeecCCcccccc-cCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccC
Q 042984           61 KILEIKNKYGQIVVPVFYRVDPSDVRNQ-TGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSH  129 (132)
Q Consensus        61 ~i~~~~~~~~~~viPIfy~v~ps~V~~q-~g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~  129 (132)
                      +|+++.    ..||||||+|+|+|||+| .|.             .+.+++++||.||++|++++|++++
T Consensus       104 ~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~  156 (187)
T PLN03194        104 LIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFD  156 (187)
T ss_pred             HHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCC
Confidence            999863    489999999999999997 443             2368999999999999999999875

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.82  E-value=1.6e-21  Score=140.65  Aligned_cols=105  Identities=35%  Similarity=0.528  Sum_probs=89.1

Q ss_pred             CceeEEEeccC----CCcchHHHHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcC--CeeeeEEeecCCcccc-
Q 042984           14 TKYDVFLSFRE----DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYG--QIVVPVFYRVDPSDVR-   86 (132)
Q Consensus        14 ~~ydVFlsfrg----~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~--~~viPIfy~v~ps~V~-   86 (132)
                      ..|.+|+-.|.    ..+.++|.++|++||+.|+|||++|+.|.||++||..++++....+  ..|+||||+|.+++++ 
T Consensus        27 ~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~  106 (141)
T PF01582_consen   27 YGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRP  106 (141)
T ss_dssp             STS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHT
T ss_pred             CCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhhhhccccccccceeeEeccCChhhcCh
Confidence            35778887653    6788999999999999999999999999999999999999986644  8999999999999999 


Q ss_pred             cccCchHHHHHHHHHHhhhC--hHHHHHHHHHHH
Q 042984           87 NQTGTFGDSFSELEERFKEK--IDMLQTWRIAMR  118 (132)
Q Consensus        87 ~q~g~~~~~f~~~~~~~~~~--~e~v~~Wr~AL~  118 (132)
                      .+++.|+..|..+......+  ..+...|++++.
T Consensus       107 ~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen  107 DQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            79999999998877655443  578999999875

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.81  E-value=3.1e-19  Score=126.85  Aligned_cols=93  Identities=39%  Similarity=0.653  Sum_probs=79.9

Q ss_pred             hHHHHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHh-cCCeeeeEEeecCCcccccccCchHHHHHHHHHHhhhCh
Q 042984           29 PSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNK-YGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKI  107 (132)
Q Consensus        29 ~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~-~~~~viPIfy~v~ps~V~~q~g~~~~~f~~~~~~~~~~~  107 (132)
                      .+|.++|++|++.|+|+|++|..|.||..|+..++++... ....||||+|+..|+++..+.+.++..+..+..++..+.
T Consensus        46 ~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~  125 (140)
T smart00255       46 EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDE  125 (140)
T ss_pred             HHHHHHHHHCcEEEEEECcccccChhHHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCch
Confidence            3889999999999999999999999999999999887654 668999999999999999999999999988755554333


Q ss_pred             HHHHHHHHHHHHhhc
Q 042984          108 DMLQTWRIAMREAAN  122 (132)
Q Consensus       108 e~v~~Wr~AL~~v~~  122 (132)
                      .+ +.|++++..+.+
T Consensus       126 ~~-~fW~~~~~~l~~  139 (140)
T smart00255      126 KE-RFWKKALYAVPS  139 (140)
T ss_pred             hH-HHHHHHHHHhcc
Confidence            33 799999988764

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=98.89  E-value=4.2e-10  Score=76.24  Aligned_cols=51  Identities=33%  Similarity=0.531  Sum_probs=43.2

Q ss_pred             CCcchHHHHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEEee
Q 042984           25 DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYR   79 (132)
Q Consensus        25 ~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIfy~   79 (132)
                      +.+.+.|.++|++|...|+++|++|..|+||..|+..+.    +.+..|+||..+
T Consensus        37 ~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~----~~~~~iipv~~~   87 (102)
T PF13676_consen   37 EDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW----KRGKPIIPVRLD   87 (102)
T ss_dssp             S-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH----CTSESEEEEECS
T ss_pred             CCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH----HCCCEEEEEEEC
Confidence            556678889999999999999999999999999998883    245589999953

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.83  E-value=3.2e-05  Score=66.94  Aligned_cols=74  Identities=27%  Similarity=0.469  Sum_probs=56.9

Q ss_pred             CCCceeEEEeccC------------------------------CCcchHHHHHhhhccceEEEeecCcc--------ccH
Q 042984           12 PHTKYDVFLSFRE------------------------------DEISPSLSSAIEGSKISIVIFSEGYA--------SSR   53 (132)
Q Consensus        12 ~~~~ydVFlsfrg------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~--------~S~   53 (132)
                      -+.+.|||||||-                              ..+.++|++.|...+-+|+|++||-.        .-+
T Consensus       609 ~skq~DVFISYRRstGnQLASLiKV~LQL~GyrVFIDVdKL~AGKFdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeD  688 (832)
T KOG3678|consen  609 LSKQIDVFISYRRSTGNQLASLIKVLLQLRGYRVFIDVDKLYAGKFDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCED  688 (832)
T ss_pred             ccCCcceEEEeeccccHHHHHHHHHHHHhcCceEEEehhhhhcccccHHHHHHHHhhheeEEEeCcchHHHHhccccHHH
Confidence            3467999999997                              56889999999999999999999843        235


Q ss_pred             HHHHHHHHHHHHHHhcCCeeeeEEee---------cCCccccccc
Q 042984           54 WCLNELVKILEIKNKYGQIVVPVFYR---------VDPSDVRNQT   89 (132)
Q Consensus        54 wCl~EL~~i~~~~~~~~~~viPIfy~---------v~ps~V~~q~   89 (132)
                      |--.||...++|.+    .|||||-.         +-|.|++-.+
T Consensus       689 WVHKEl~~Afe~~K----NIiPI~D~aFE~Pt~ed~iPnDirmi~  729 (832)
T KOG3678|consen  689 WVHKELKCAFEHQK----NIIPIFDTAFEFPTKEDQIPNDIRMIT  729 (832)
T ss_pred             HHHHHHHHHHHhcC----CeeeeecccccCCCchhcCcHHHHHHH
Confidence            66667777776654    89999954         5566666554

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=97.63  E-value=6.3e-05  Score=53.58  Aligned_cols=49  Identities=24%  Similarity=0.431  Sum_probs=33.3

Q ss_pred             CcchHHHHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEEe
Q 042984           26 EISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFY   78 (132)
Q Consensus        26 ~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIfy   78 (132)
                      .|...|.++|++|.+.||+.+++-..|+|+-.|+...++    .+..||-|.+
T Consensus        59 ~ik~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~  107 (130)
T PF08937_consen   59 YIKRKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALK----KGKPIIGVYL  107 (130)
T ss_dssp             THHHHHHHHHHTEEEEEEE--TT----HHHHHHHHHHTT----T---EEEEET
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence            456778889999999999999999999999999998765    3446666654

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF09441 Abp2: ARS binding protein 2; InterPro: IPR018562 This DNA-binding protein binds to the autonomously replicating sequence (ARS) binding element

Probab=82.16  E-value=0.65  Score=34.98  Aligned_cols=90  Identities=23%  Similarity=0.321  Sum_probs=53.0

Q ss_pred             ceeEEEeccC-----CCcchHHHHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEEeecCCccccccc
Q 042984           15 KYDVFLSFRE-----DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQT   89 (132)
Q Consensus        15 ~ydVFlsfrg-----~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIfy~v~ps~V~~q~   89 (132)
                      .|=.||=||-     ..-+.+|.++.+.--.     |..=.-|.|-|.||..-++..+-+.=.=+-+.++|+|-++.+..
T Consensus        17 AYv~FilyCNP~vP~~tdT~~Lr~aFr~pPk-----S~Gk~Fs~~~Lf~LI~k~~~keikTW~~La~~LGVepp~~ek~q   91 (175)
T PF09441_consen   17 AYVAFILYCNPAVPLDTDTSELREAFRSPPK-----SDGKSFSTFTLFELIRKLESKEIKTWAQLALELGVEPPDPEKGQ   91 (175)
T ss_pred             hhheeeeecCCCCCCCCCHHHHHHHhcCCCC-----cCCccchHHHHHHHHHHHhhhhHhHHHHHHHHhCCCCCCccccc
Confidence            4445666666     2234456666542111     22223368999999877665433222234566799998876532


Q ss_pred             CchHHHHHHHHHHhhhChHHHHHHHHHHH
Q 042984           90 GTFGDSFSELEERFKEKIDMLQTWRIAMR  118 (132)
Q Consensus        90 g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~  118 (132)
                               ..++.+...-+++||+.|+.
T Consensus        92 ---------StQKvqQYaVRLKRWM~aMH  111 (175)
T PF09441_consen   92 ---------STQKVQQYAVRLKRWMRAMH  111 (175)
T ss_pred             ---------chHHHHHHHHHHHHHHHHhh
Confidence                     13344455678999999975

It may play a role in regulating the cell cycle response to stress signals [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		9e-19
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		4e-18

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 88.6 bits (218), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 72/114 (63%), Gaps = 10/114 (8%)
Query: 21  SFRED-------EISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYG-QI 72
           +FR+D       EI P+L  AI+ SKI + I S GYA S+WCL EL +I+  + +   +I
Sbjct: 66  TFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRI 125
Query: 73  VVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGF 126
           ++P+FY VDPSDVR+QTG +  +F +   +F  +   +Q W+ A+++  +L G+
Sbjct: 126 ILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQ--TIQNWKDALKKVGDLKGW 177

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 71/144 (49%), Gaps = 34/144 (23%)
Query: 14  TKYDVFLSFREDE--------------------------------ISPSLSSAIEGSKIS 41
           TKYDVFLSFR  +                                 SP L S IE S+ +
Sbjct: 7   TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFA 66
Query: 42  IVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEE 101
           +V+ SE YA+S WCL+ELV I++ + K    V+P+FY V+P+ VR QTG   + F +   
Sbjct: 67  VVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS 126
Query: 102 RFKEKIDMLQTWRIAMREAANLSG 125
           R  E  + +  WR A+   A LSG
Sbjct: 127 R--EDPEKVLKWRQALTNFAQLSG 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	6e-61
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	9e-61
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	1e-47
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	1e-07

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  184 bits (470), Expect = 6e-61
 Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 35/165 (21%)

Query: 1   MASSSSSINMIPHTKYDVFLSFR-ED-------------------------------EIS 28
           ++ S++     P  +Y+VFLSFR  D                               EI 
Sbjct: 21  ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIG 80

Query: 29  PSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYG-QIVVPVFYRVDPSDVRN 87
           P+L  AI+ SKI + I S GYA S+WCL EL +I+  + +   +I++P+FY VDPSDVR+
Sbjct: 81  PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140

Query: 88  QTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSHSIR 132
           QTG +  +F +   +F      +Q W+ A+++  +L G+      
Sbjct: 141 QTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIGKND 183

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  183 bits (467), Expect = 9e-61
 Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 41/162 (25%)

Query: 1   MASSSSSINMIPHTKYDVFLSFR-ED-------------------------------EIS 28
           M+S +++       KYDVFLSFR  D                                 S
Sbjct: 1   MSSHTAT-------KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFS 53

Query: 29  PSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQ 88
           P L S IE S+ ++V+ SE YA+S WCL+ELV I++ + K    V+P+FY V+P+ VR Q
Sbjct: 54  PELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQ 113

Query: 89  TGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSHS 130
           TG   + F +   R     + +  WR A+   A LSG  S  
Sbjct: 114 TGVLAEQFKKHASREDP--EKVLKWRQALTNFAQLSGDCSGD 153

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  149 bits (378), Expect = 1e-47
 Identities = 21/147 (14%), Positives = 54/147 (36%), Gaps = 33/147 (22%)

Query: 2   ASSSSSINMIPHTKYDVFLSFR-ED------------------------------EISPS 30
           A  +++ ++     +D+F+S   ED                               +  S
Sbjct: 7   AGPTTNADLTSAPPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRS 66

Query: 31  LSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRVDPSDVRNQTG 90
           +   +  S+  IV+ S  +    W   EL  + ++++     ++P++++V   +V + + 
Sbjct: 67  IDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSP 126

Query: 91  TFGDSFSELEERFKEKIDMLQTWRIAM 117
           T  D  +         +D +    +A+
Sbjct: 127 TMADKLAFNTSTK--SVDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 46.6 bits (111), Expect = 1e-07
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 16  YDVFLSFRE----DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQ 71
              FL  R+      I   L  A+  S   +++ + G+    WC  ++++ L        
Sbjct: 39  LRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEG 98

Query: 72  IVVPVFYRVDPSDVR 86
             +P+   +  +   
Sbjct: 99  CTIPLLSGLSRAAYP 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.94
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.82
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.7
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.69
2js7_A	160	Myeloid differentiation primary response protein M	99.67
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.62
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.32
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	96.26
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	92.28

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=7.6e-47  Score=289.54  Aligned_cols=119  Identities=42%  Similarity=0.807  Sum_probs=109.7

Q ss_pred             CCCCceeEEEeccC--------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHH
Q 042984           11 IPHTKYDVFLSFRE--------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNE   58 (132)
Q Consensus        11 ~~~~~ydVFlsfrg--------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~E   58 (132)
                      .+.++|||||||||                                +.|.++|++||++||++|+|||+||++|.|||+|
T Consensus        31 ~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~E  110 (204)
T 3ozi_A           31 FPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLME  110 (204)
T ss_dssp             ---CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHH
T ss_pred             CCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHH
Confidence            47899999999999                                5688999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-cCCeeeeEEeecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccCCC
Q 042984           59 LVKILEIKNK-YGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSHSI  131 (132)
Q Consensus        59 L~~i~~~~~~-~~~~viPIfy~v~ps~V~~q~g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~~~  131 (132)
                      |++|++|+++ +++.||||||+|+|++||+|+|.||++|.+|++++.  ++++++||.||++||+++||++.+.
T Consensus       111 L~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~~  182 (204)
T 3ozi_A          111 LAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGKN  182 (204)
T ss_dssp             HHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECTT
T ss_pred             HHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCCC
Confidence            9999999875 579999999999999999999999999999998763  7899999999999999999999865

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=1e-45  Score=277.97  Aligned_cols=116  Identities=46%  Similarity=0.768  Sum_probs=101.5

Q ss_pred             CCCceeEEEeccC--------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHHH
Q 042984           12 PHTKYDVFLSFRE--------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNEL   59 (132)
Q Consensus        12 ~~~~ydVFlsfrg--------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL   59 (132)
                      +.++|||||||||                                +.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus         5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL   84 (176)
T 3jrn_A            5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL   84 (176)
T ss_dssp             --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred             CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence            4579999999999                                56888999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeeeeEEeecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHhhcccCcccC
Q 042984           60 VKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREAANLSGFDSH  129 (132)
Q Consensus        60 ~~i~~~~~~~~~~viPIfy~v~ps~V~~q~g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~  129 (132)
                      ++|++|.+.+++.||||||+|+|++||+|+|.||++|.+|+++  .+.+++++||.||++|++++||++.
T Consensus        85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            9999999889999999999999999999999999999999987  5689999999999999999999974

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.94  E-value=1.7e-28  Score=178.98  Aligned_cols=106  Identities=16%  Similarity=0.314  Sum_probs=87.8

Q ss_pred             CCCCCceeEEEeccC-------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHH
Q 042984           10 MIPHTKYDVFLSFRE-------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNE   58 (132)
Q Consensus        10 ~~~~~~ydVFlsfrg-------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~E   58 (132)
                      .++.++|||||||+|                               +.+.++|.++|++|+++|+|+|+||+.|.||++|
T Consensus        15 ~~~~~~~dvFISy~~~D~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E   94 (154)
T 3h16_A           15 LTSAPPHDIFISHAWEDKADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE   94 (154)
T ss_dssp             ---CCSEEEEEEEEGGGTTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred             cCCCCCceEEEECcccChHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence            357799999999999                               5577899999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCeeeeEEeecCCcccccccCchHHHHHHHHHHhhhChHHHHHHHHHHHHh
Q 042984           59 LVKILEIKNKYGQIVVPVFYRVDPSDVRNQTGTFGDSFSELEERFKEKIDMLQTWRIAMREA  120 (132)
Q Consensus        59 L~~i~~~~~~~~~~viPIfy~v~ps~V~~q~g~~~~~f~~~~~~~~~~~e~v~~Wr~AL~~v  120 (132)
                      |..++++...+++.||||||+|+|++|++|+|.|+++|.....     ...+.++-..|.++
T Consensus        95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l  151 (154)
T 3h16_A           95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI  151 (154)
T ss_dssp             HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence            9999998777788999999999999999999999998864332     23345554555443

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.82  E-value=2.1e-22  Score=146.42  Aligned_cols=99  Identities=15%  Similarity=0.307  Sum_probs=77.0

Q ss_pred             CCCceeEEEeccC--------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHHH
Q 042984           12 PHTKYDVFLSFRE--------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNEL   59 (132)
Q Consensus        12 ~~~~ydVFlsfrg--------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL   59 (132)
                      .++.|||||||+|                                +.|.++|.++|++||+.|+|||+||+.|.||+.||
T Consensus         7 ~~k~YDvFISy~~~D~~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El   86 (146)
T 3ub2_A            7 WSKDYDVCVCHSEEDLVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQM   86 (146)
T ss_dssp             TSSSEEEEEECCGGGHHHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHH
T ss_pred             CCCcceEEEeCChhhHHHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHH
Confidence            5679999999999                                55778899999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCeeeeEEeecCCcc----cccccC----chHHHHHHHHHHhhhChHHHHHHHHHH
Q 042984           60 VKILEIKNKYGQIVVPVFYRVDPSD----VRNQTG----TFGDSFSELEERFKEKIDMLQTWRIAM  117 (132)
Q Consensus        60 ~~i~~~~~~~~~~viPIfy~v~ps~----V~~q~g----~~~~~f~~~~~~~~~~~e~v~~Wr~AL  117 (132)
                      ..++.+...+...||||||+|++.+    ++....    ...+.|.+       -.+.|.+|+.||
T Consensus        87 ~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~-------l~~~v~~~~~~~  145 (146)
T 3ub2_A           87 LQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQ-------VKEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHH-------HHHHHHHHHTTC
T ss_pred             HHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHH-------HHHHHHHHHHhc
Confidence            9999876333347789999998554    455432    12344433       347789998876

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.70  E-value=1.3e-18  Score=126.44  Aligned_cols=75  Identities=20%  Similarity=0.366  Sum_probs=64.0

Q ss_pred             CCCceeEEEeccC---------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHH
Q 042984           12 PHTKYDVFLSFRE---------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNE   58 (132)
Q Consensus        12 ~~~~ydVFlsfrg---------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~E   58 (132)
                      .++.|||||||+|                                 +.+.++|.++|++|++.|+|+|+||+.|.||+.|
T Consensus         2 ~~~~yDvFiSy~~~D~~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~E   81 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYE   81 (149)
T ss_dssp             CSCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred             CCccceEEEECCcccHHHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHH
Confidence            3578999999999                                 4567899999999999999999999999999999


Q ss_pred             HHHHHH-HHHhcCCeeeeEEe-ecCCcccc
Q 042984           59 LVKILE-IKNKYGQIVVPVFY-RVDPSDVR   86 (132)
Q Consensus        59 L~~i~~-~~~~~~~~viPIfy-~v~ps~V~   86 (132)
                      |..++. +.+.+++.|||||| ++++.++.
T Consensus        82 l~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           82 LDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             SCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            999874 44567788999999 46665553

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.69  E-value=4.3e-18  Score=127.34  Aligned_cols=74  Identities=20%  Similarity=0.380  Sum_probs=59.7

Q ss_pred             CCCceeEEEeccC---------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHH
Q 042984           12 PHTKYDVFLSFRE---------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNE   58 (132)
Q Consensus        12 ~~~~ydVFlsfrg---------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~E   58 (132)
                      .++.|||||||+|                                 +.|.++|.++|++|+++|+|+|+||+.|.||++|
T Consensus        32 ~~~~yDvFISys~~D~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~E  111 (178)
T 2j67_A           32 RNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYE  111 (178)
T ss_dssp             CSCCEEEEEECCGGGHHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTH
T ss_pred             CCccceEEEECCCCCHHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHH
Confidence            5679999999999                                 4677899999999999999999999999999999


Q ss_pred             HHHHHHH-HHhcCCeeeeEEee-cCCccc
Q 042984           59 LVKILEI-KNKYGQIVVPVFYR-VDPSDV   85 (132)
Q Consensus        59 L~~i~~~-~~~~~~~viPIfy~-v~ps~V   85 (132)
                      |..++.+ .+.+++.||||||+ +.+.++
T Consensus       112 l~~a~~~~~~~~~~~vIpV~~~~i~~~~l  140 (178)
T 2j67_A          112 FYFAHHNLFHENSDHIILILLEPIPFYCI  140 (178)
T ss_dssp             HHHTTCC-------CEEEEESSCCCGGGS
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCChHHC
Confidence            9999854 45567789999995 444443

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.67  E-value=5.8e-18  Score=124.50  Aligned_cols=70  Identities=19%  Similarity=0.326  Sum_probs=61.1

Q ss_pred             CCceeEEEeccC--------------------------------CCcchHHHHHhh-hccceEEEeecCccccHHHHHHH
Q 042984           13 HTKYDVFLSFRE--------------------------------DEISPSLSSAIE-GSKISIVIFSEGYASSRWCLNEL   59 (132)
Q Consensus        13 ~~~ydVFlsfrg--------------------------------~~i~~~l~~aI~-~Sri~IvV~S~~y~~S~wCl~EL   59 (132)
                      ++.|||||||+|                                +.|.++|.++|+ +|+++|+|+|+||+.|.||++|+
T Consensus        14 ~~~yDvFISys~~D~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El   93 (160)
T 2js7_A           14 PERFDAFICYCPSDIQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQT   93 (160)
T ss_dssp             TTCEEEEEECCGGGHHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHH
T ss_pred             CcceEEEEEcccccHHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHH
Confidence            578999999999                                456788999999 79999999999999999999999


Q ss_pred             HHHHHHH-HhcCCeeeeEEeecCC
Q 042984           60 VKILEIK-NKYGQIVVPVFYRVDP   82 (132)
Q Consensus        60 ~~i~~~~-~~~~~~viPIfy~v~p   82 (132)
                      ..++.+. +.+++.||||||+.-+
T Consensus        94 ~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           94 KFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHccCCCEEEEEEEcccc
Confidence            9999864 4455689999997543

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.62  E-value=2.7e-16  Score=115.45  Aligned_cols=59  Identities=15%  Similarity=0.166  Sum_probs=50.8

Q ss_pred             CCcchHHHHHhhhccceEEEeecCcc-ccHHHHHHHHHHHHHH-HhcCCeeeeEEeecCCc
Q 042984           25 DEISPSLSSAIEGSKISIVIFSEGYA-SSRWCLNELVKILEIK-NKYGQIVVPVFYRVDPS   83 (132)
Q Consensus        25 ~~i~~~l~~aI~~Sri~IvV~S~~y~-~S~wCl~EL~~i~~~~-~~~~~~viPIfy~v~ps   83 (132)
                      +.|.++|.++|++||..|+|+|+||+ .|.||+.|+..++.+. +.+++.||||+|+-.+.
T Consensus        55 ~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           55 GTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             TTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             cchHHHHHHHHHHcCEEEEEEccchhhcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence            44567899999999999999999997 9999999999999875 56678999999975443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.32  E-value=3.4e-13  Score=118.41  Aligned_cols=71  Identities=18%  Similarity=0.319  Sum_probs=61.4

Q ss_pred             CCCceeEEEeccC------------------------------------CCcchHHHHHhhhccceEEEeecCccccHHH
Q 042984           12 PHTKYDVFLSFRE------------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWC   55 (132)
Q Consensus        12 ~~~~ydVFlsfrg------------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wC   55 (132)
                      .+++|||||||++                                    +.|.++|.++|++||..|+|+|++|+.|.||
T Consensus       667 ~~~~yd~fisy~~~d~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc  746 (844)
T 3j0a_A          667 DMYKYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWC  746 (844)
T ss_dssp             SCCCCSEEEECCSTTHHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTST
T ss_pred             cceeccEEEEeeCCcHHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHH
Confidence            4679999999999                                    3466899999999999999999999999999


Q ss_pred             HHHHHHHHHHH-HhcCCeeeeEEeecCC
Q 042984           56 LNELVKILEIK-NKYGQIVVPVFYRVDP   82 (132)
Q Consensus        56 l~EL~~i~~~~-~~~~~~viPIfy~v~p   82 (132)
                      .+|+..++.+. +++++.||||||+..|
T Consensus       747 ~~e~~~a~~~~~~~~~~~~i~i~~~~~~  774 (844)
T 3j0a_A          747 LEAFSYAQGRCLSDLNSALIMVVVGSLS  774 (844)
T ss_dssp             THHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence            99999887543 5667899999996544

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=96.26  E-value=0.0018  Score=44.54  Aligned_cols=60  Identities=12%  Similarity=0.011  Sum_probs=41.7

Q ss_pred             CceeEEEeccCCCcchHHH------------HHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEE
Q 042984           14 TKYDVFLSFREDEISPSLS------------SAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVF   77 (132)
Q Consensus        14 ~~ydVFlsfrg~~i~~~l~------------~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIf   77 (132)
                      .+|.+||||..+.--+.|.            +.|+.|.+.||..+++...|+||..|+....+    .+..|+-|.
T Consensus         3 ~~~~lFISh~~~d~~~~L~~~l~~~~f~~~~~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~----~gkpIigV~   74 (111)
T 1eiw_A            3 AEIRLYITEGEVEDYRVFLERLEQSGLEWRPATPEDADAVIVLAGLWGTRRDEILGAVDLARK----SSKPIITVR   74 (111)
T ss_dssp             CCEEEEECCCCSHHHHHHHHHHHHHCSCEEECCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTT----TTCCEEEEC
T ss_pred             ceEEEEEecccHhHHHHHHHHHhCCCCeeecCccccCCEEEEEeCCCcCCChHHHHHHHHHHH----cCCCEEEEE
Confidence            4799999999854111221            23567888899888888999999999976543    344454443

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=92.28  E-value=0.16  Score=37.96  Aligned_cols=71  Identities=23%  Similarity=0.318  Sum_probs=51.1

Q ss_pred             CCcchHHHHHhhhccceEEEeecCccccHHHHHHHHHHHHHHHhcCCeeeeEEeec-CCcccccccCchHHHHHH
Q 042984           25 DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILEIKNKYGQIVVPVFYRV-DPSDVRNQTGTFGDSFSE   98 (132)
Q Consensus        25 ~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~~i~~~~~~~~~~viPIfy~v-~ps~V~~q~g~~~~~f~~   98 (132)
                      ..|-..|.+.|..|+..|+++|++...|.|-..|+..+++   +.+..||-|.-+- ..+++..-.|.+......
T Consensus        67 ~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~  138 (189)
T 3hyn_A           67 KTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKD  138 (189)
T ss_dssp             TTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETTCCSGGGTBCTTSCBCHHHHH
T ss_pred             HHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECCccccchhhhccccchhhHhh
Confidence            3466788999999999999999999999999999987762   2455777776542 244566544555444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	1e-06
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	2e-06

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (100), Expect = 1e-06
 Identities = 17/108 (15%), Positives = 28/108 (25%), Gaps = 34/108 (31%)

Query: 15  KYDVFLSFRE---------------------------------DEISPSLSSAIEGSKIS 41
            YD F+S+ E                                   I  ++  +IE S  +
Sbjct: 5   CYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKT 64

Query: 42  IVIFSEGYASSRWCLNELVKILEIKNKYG-QIVVPVFYRVDPSDVRNQ 88
           + + SE +  S WC  EL               + +           Q
Sbjct: 65  VFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 2e-06
 Identities = 17/107 (15%), Positives = 29/107 (27%), Gaps = 32/107 (29%)

Query: 15  KYDVFLSFR-EDE------------------------------ISPSLSSAIEGSKISIV 43
           ++  F+S+   D                               I  ++ + IE S  SI 
Sbjct: 12  QFHAFISYSGHDSFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIF 71

Query: 44  IFSEGYASSRWCLNELVKILEIKNKYGQIV-VPVFYRVDPSDVRNQT 89
           + S  +  S WC  EL          G    + +     P      +
Sbjct: 72  VLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSS 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.53
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.47

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.8e-16  Score=109.82  Aligned_cols=71  Identities=23%  Similarity=0.375  Sum_probs=60.7

Q ss_pred             CCCceeEEEeccC---------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHH
Q 042984           12 PHTKYDVFLSFRE---------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNE   58 (132)
Q Consensus        12 ~~~~ydVFlsfrg---------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~E   58 (132)
                      ..+.|||||||++                                 +.+.++|.++|++|+..|+|+|++|..|.||..|
T Consensus         2 ~~~~YDvFiSys~~D~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~~E   81 (149)
T d1fyxa_           2 RNICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYE   81 (149)
T ss_dssp             CSCCEEEEEECCGGGHHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred             CCCEEEEEEECchhhHHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchHHH
Confidence            4578999999999                                 5677899999999999999999999999999999


Q ss_pred             HHHHHH-HHHhcCCeeeeEEeecCC
Q 042984           59 LVKILE-IKNKYGQIVVPVFYRVDP   82 (132)
Q Consensus        59 L~~i~~-~~~~~~~~viPIfy~v~p   82 (132)
                      +..++. ..+.++..+|||+++..+
T Consensus        82 ~~~a~~~~~~~~~~~iIpV~l~~~~  106 (149)
T d1fyxa_          82 LDFSHFRLFDENNDAAILILLEPIE  106 (149)
T ss_dssp             SCCSCCTTCGGGTTCCEEEESSCCC
T ss_pred             HHHHHHHHHHcCCceEEEEEeccCc
Confidence            987654 335667899999996433

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.5e-15  Score=107.42  Aligned_cols=71  Identities=21%  Similarity=0.384  Sum_probs=61.4

Q ss_pred             CCCceeEEEeccC-------------------------------CCcchHHHHHhhhccceEEEeecCccccHHHHHHHH
Q 042984           12 PHTKYDVFLSFRE-------------------------------DEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELV   60 (132)
Q Consensus        12 ~~~~ydVFlsfrg-------------------------------~~i~~~l~~aI~~Sri~IvV~S~~y~~S~wCl~EL~   60 (132)
                      ..++|||||||++                               +.+.++|.++|++|+..|+|+|++|..|.||..|+.
T Consensus         9 ~~~~yDvFisys~~D~~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E~~   88 (161)
T d1fyva_           9 RNLQFHAFISYSGHDSFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYELY   88 (161)
T ss_dssp             SCCCEEEEEECCGGGHHHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHHHH
T ss_pred             CCCeeEEEEecChhHHHHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHHHHH
Confidence            5689999999999                               567789999999999999999999999999999999


Q ss_pred             HHHHHH-HhcCCeeeeEEeecCC
Q 042984           61 KILEIK-NKYGQIVVPVFYRVDP   82 (132)
Q Consensus        61 ~i~~~~-~~~~~~viPIfy~v~p   82 (132)
                      .++.+. +.+...+|||+++--|
T Consensus        89 ~a~~~~~~~~~~~lIpV~l~~~~  111 (161)
T d1fyva_          89 FAHHNLFHEGSNSLILILLEPIP  111 (161)
T ss_dssp             TTSCCCSCSSCSSEEEEESSCCC
T ss_pred             HHHHHHHHcCCCceeEEEEecCc
Confidence            987654 4456789999996433