Citrus Sinensis ID: 042999
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1006 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DN12 | 878 | Multiple C2 and transmemb | yes | no | 0.600 | 0.687 | 0.213 | 5e-10 | |
| Q5RJH2 | 878 | Multiple C2 and transmemb | yes | no | 0.674 | 0.773 | 0.208 | 4e-09 | |
| Q9ZVT9 | 1020 | C2 and GRAM domain-contai | no | no | 0.119 | 0.117 | 0.356 | 1e-07 | |
| Q7XA06 | 540 | Synaptotagmin-3 OS=Arabid | no | no | 0.067 | 0.125 | 0.418 | 5e-07 | |
| P27715 | 2155 | Phorbol ester/diacylglyce | yes | no | 0.119 | 0.055 | 0.285 | 1e-06 | |
| O14795 | 1591 | Protein unc-13 homolog B | no | no | 0.119 | 0.075 | 0.293 | 2e-06 | |
| Q9Z1N9 | 1602 | Protein unc-13 homolog B | no | no | 0.119 | 0.074 | 0.293 | 2e-06 | |
| Q62769 | 1622 | Protein unc-13 homolog B | no | no | 0.119 | 0.073 | 0.293 | 3e-06 | |
| Q62770 | 2204 | Protein unc-13 homolog C | no | no | 0.119 | 0.054 | 0.285 | 3e-06 | |
| Q8NB66 | 2214 | Protein unc-13 homolog C | no | no | 0.119 | 0.054 | 0.285 | 4e-06 |
| >sp|Q6DN12|MCTP2_HUMAN Multiple C2 and transmembrane domain-containing protein 2 OS=Homo sapiens GN=MCTP2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 159/746 (21%), Positives = 296/746 (39%), Gaps = 142/746 (19%)
Query: 290 DLVEPMMYLF-VKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDSPEW 343
+L P YL + +++ R LV + PYVK + + Y+ +P W
Sbjct: 187 NLPSPFAYLLTIHLKEGRNLVVRDRCGTSDPYVKFKLNGKTLYKSKVIYKNLNP----VW 242
Query: 344 NQVFALFHNKNDSVSATLEITVWDS--PTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRL 401
+++ L S+ L + V+D T +F+G LSD+ + + L +L
Sbjct: 243 DEIVVL---PIQSLDQKLRVKVYDRDLTTSDFMGSAFVILSDLELNRTTEHIL-----KL 294
Query: 402 EGEASDQNNRVSGDIQLAVWIGTQADEAFPEAWS-------SDAPYVTHTR-SKVYQSPK 453
E S +++ G I L + + + + WS S + + + R S+ + +
Sbjct: 295 EDPNSLEDDM--GVIVLNLNLVVKQGDFKRHRWSNRKRLSASKSSLIRNLRLSESLKKNQ 352
Query: 454 LW--YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHED 511
LW + +T++E + N+ + E+ V+ +L Q +++ S++ W E
Sbjct: 353 LWNGIISITLLEGK------NVSGGSMTEMFVQLKLGDQRYKSKTLC---KSANPQWQEQ 403
Query: 512 VFFVAAEPFEDSLILLVEDRTAKDAAA--VILGHAVVPVSSIDQRIDERHVASKWFPLEG 569
F F D + +L + KD LG V +S++ + PL+
Sbjct: 404 FDF---HYFSDRMGILDIEVWGKDNKKHEERLGTCKVDISALPLK----QANCLELPLDS 456
Query: 570 SCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWK-----------PPV 618
C + + L C G V D +D KQ+ + V
Sbjct: 457 -----CLGALLMLVTLTPC--AGVSVSDLCVCPLADL-SERKQITQRYCLQNSLKDVKDV 508
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQV 678
GIL++ +L A LL G +D +C+ + G ++T T+ +P WN+ +T+ +
Sbjct: 509 GILQVKVLKAADLLAADFS----GKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 564
Query: 679 YDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGL 738
D VL V VFD + ++ PD+ +GK+ I + ++ + + Y L
Sbjct: 565 KDIHDVLEVTVFD------EDGDKPPDF-LGKVAIPLLSIRDGQ--PNCYVL-------- 607
Query: 739 KKMGEIELAVRFVCPSMLPETSSVYGQPLLPRMHYLRPLGVAQQEALRGAATKMVAAWLD 798
K ++E A + V + E +Y P+ + P E R + K+++ +D
Sbjct: 608 -KNKDLEQAFKGV---IYLEMDLIYN-PVKASIRTFTPREKRFVEDSRKLSKKILSRDVD 662
Query: 799 RSEPPLGPEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAIGLAKWLHNIRRWKNPVTT 858
R + R + A W ++L + +W++ + +
Sbjct: 663 RVK---------------------RITMAIW-----------NTMQFLKSCFQWESTLRS 690
Query: 859 VLVHVLYLVLVWYPDL-IVPTGFLYVVLIGVWYYRFRP---KIPSGMDTRLSQAETVDPD 914
+ ++L+ VW +L ++P L + + Y RP K+ S D SQ T D
Sbjct: 691 TIAFAVFLITVWNFELYMIPLALLLIFV----YNFIRPVKGKVSSIQD---SQESTDIDD 743
Query: 915 ELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKL 974
E DE+ E I M D + + VQ VL + A+ GER++ +W P + L
Sbjct: 744 EEDEDDKESEKKGLIERIYMVQD----IVSTVQNVLEEIASFGERIKNTFNWTVPFLSSL 799
Query: 975 FIGVCTVITLVLYVVPPKMVAVALGF 1000
+ T++LY +P + + + G
Sbjct: 800 ACLILAAATIILYFIPLRYIILIWGI 825
|
Homo sapiens (taxid: 9606) |
| >sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 172/825 (20%), Positives = 321/825 (38%), Gaps = 146/825 (17%)
Query: 214 EESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIRKMQSGCA-----ERVNVLKRPNGDYS 268
E S HGV E + P +E + A ++ K G ++ + N +
Sbjct: 109 EASHVHGVDTDSEEIYASPAEEWQAFSQSALDLHKPSLGRDAPEEHDKTHGNDDLNASMT 168
Query: 269 PKVINSSKPNGEVPTERIHPYDLVEPMMYLF-VKIRKARGLVPNEA-----PYVKIRTSS 322
+ GE H L P YL + +++ R LV + PYVK + +
Sbjct: 169 SQHFEEESTLGEASDCVSH---LPSPFAYLLTIHLKEGRNLVVRDRCGTSDPYVKFKLNG 225
Query: 323 HYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDS--PTENFLGGVCFD 380
Y+ +P W+++ L S+ L + V+D +F+G
Sbjct: 226 KTLYKSKVIYKNLNPI----WDEIVVL---PIQSLDQKLRVKVYDRDLTKSDFMGSAFVV 278
Query: 381 LSDVPVRDPPDSPLAPQWYRLEGEASDQNNRVSGDIQLAVWIGTQADEAFPEAWS----- 435
L D+ + + L +LE S +++ G I L + + + + WS
Sbjct: 279 LRDLELNRTTEHIL-----KLEDPNSLEDDM--GVIVLNLNLVVKQGDFKRHRWSNRKRL 331
Query: 436 --SDAPYVTHTR-SKVYQSPKLW--YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQ 490
S + + + R S+ + +LW + +T++E + N+ E+ V+ +L Q
Sbjct: 332 SASKSSLIRNLRLSESLRKNQLWNGIISITLLEGK------NVSGGNMTEMFVQLKLGEQ 385
Query: 491 SARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAA--VILGHAVVPV 548
+++ S++ W E F F D + +L + KD+ LG V +
Sbjct: 386 RYKSKTLC---KSANPQWQEQFDF---HYFSDRMGILDIEVWGKDSKKHEERLGTCKVDI 439
Query: 549 SSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRP 608
S++ + D PLE C + I L C G + D VC P
Sbjct: 440 SALPLKQDN----CLELPLES-----CQGALLMLITLTPC--TGVSISDLC--VCPFEDP 486
Query: 609 TAKQLWK------------PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW 656
+ +Q VGIL++ +L A LL G +D +C+ + G
Sbjct: 487 SERQQISQRYAFQNSLKDVKDVGILQVKVLKASDLLAADFS----GKSDPFCLLELGNDR 542
Query: 657 VRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVS 716
++T TI +P WN+ +T+ + D VL V VFD + ++ PD+ +GK+ I +
Sbjct: 543 LQTHTIYKNLNPEWNKVFTFPIKDIHDVLEVTVFD------EDGDKAPDF-LGKVAIPLL 595
Query: 717 TLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLPRMHYLRP 776
++ + + Y L K ++E A + + + E +Y P+ + P
Sbjct: 596 SIRDGQ--PNCYVL---------KNKDLEQAFKGL---IYLELDLIYN-PVKASIRTFTP 640
Query: 777 LGVAQQEALRGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWSMRKSKANWFRIVAVL 836
E R + K+++ +DR + R + A W
Sbjct: 641 REKRFVEDSRKLSKKILSRDVDRVK---------------------RLTLAIW------- 672
Query: 837 AWAIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWYPDL-IVPTGFLYVVLIGVWYYRFRP 895
++ + +W++ + + + V++LV VW +L ++P L + L Y RP
Sbjct: 673 ----NTVQFFKSCFQWESTLRSTIAFVVFLVTVWNFELYMIPLALLLLFL----YNFLRP 724
Query: 896 KIPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFAT 955
T+ SQ T D +E + S+ II Y ++ + + VQ +L + A+
Sbjct: 725 MKGKASSTQDSQEST---DVEEEGKEEEKESEKKGIIERIY-MVQDIVSTVQNILEEVAS 780
Query: 956 QGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGF 1000
GER++ + +W P + L + + T++LY +P + + + G
Sbjct: 781 FGERIKNVFNWTVPFLSLLACLILAITTVILYFIPLRYIILLWGI 825
|
Mus musculus (taxid: 10090) |
| >sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 65/132 (49%), Gaps = 12/132 (9%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
KL V VV+AR+L D G S PYV QR RT ++LNP W E F V D
Sbjct: 2 KLQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLN- 60
Query: 77 MDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQF--ARRGDEGLVYFPLE-KKSVFS 133
+EL + V ++ +Y N + F+G+V++ S A G V++PL KK
Sbjct: 61 ---DELVVSVLDEDKYFN-----DDFVGQVRVSVSLVFDAENQSLGTVWYPLNPKKKGSK 112
Query: 134 WIRGEIGLRIYY 145
GEI L+I +
Sbjct: 113 KDCGEILLKICF 124
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA06|SYT3_ARATH Synaptotagmin-3 OS=Arabidopsis thaliana GN=SYT3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 6/74 (8%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQR---KRTSTKFRDLNPVWNEPLEFIVSDP 74
L V ++ AR+LL KD G+S PYV G++ K+T+ K R+LNP WNE + IV DP
Sbjct: 263 LHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKTTIKKRNLNPEWNEHFKLIVKDP 322
Query: 75 KNMDCEELEIEVYN 88
+ + L++EV++
Sbjct: 323 ---NSQVLQLEVFD 333
|
May be involved in membrane trafficking. Arabidopsis thaliana (taxid: 3702) |
| >sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 OS=Caenorhabditis elegans GN=unc-13 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
K+ + V+ A+ L+ KD G S PYV A ++RT T ++LNPVWNE F +
Sbjct: 1158 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS-- 1215
Query: 77 MDCEELEIEVYNDKRYCNGSGRK------NHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130
+ +++ V+++ R+ + FLG+ + + D V++ LEK++
Sbjct: 1216 --TDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMD---VWYNLEKRT 1270
Query: 131 VFSWIRGEIGLRI 143
S + G I L I
Sbjct: 1271 DKSAVSGAIRLHI 1283
|
May form part of a signal transduction pathway, transducing the signal from diacylglycerol to effector functions. One such function could be the release of neurotransmitter from neurons. Caenorhabditis elegans (taxid: 6239) |
| >sp|O14795|UN13B_HUMAN Protein unc-13 homolog B OS=Homo sapiens GN=UNC13B PE=1 SV=2 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
K+ + VV A+ L KD GSS PYV +KRT T F +LNPVW E F + +
Sbjct: 601 KITITVVCAQGLQAKDKTGSSDPYVTVQVSKTKKRTKTIFGNLNPVWEEKFHFECHNSSD 660
Query: 77 MDCEELEIEVYNDKRYCNGSGRK------NHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130
+++ V+++ ++ + FLG+ + + D V++ LEK++
Sbjct: 661 ----RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLSGEMD---VWYNLEKRT 713
Query: 131 VFSWIRGEIGLRI 143
S + G I L+I
Sbjct: 714 DKSAVSGAIRLQI 726
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Homo sapiens (taxid: 9606) |
| >sp|Q9Z1N9|UN13B_MOUSE Protein unc-13 homolog B OS=Mus musculus GN=Unc13b PE=2 SV=2 | Back alignment and function description |
|---|
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
K+ + VV A+ L KD GSS PYV +KRT T F +LNPVW E F + +
Sbjct: 613 KITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLNPVWEEKFHFECHNSSD 672
Query: 77 MDCEELEIEVYNDKRYCNGSGRK------NHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130
+++ V+++ ++ + FLG+ + + D V++ LEK++
Sbjct: 673 ----RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLSGEMD---VWYNLEKRT 725
Query: 131 VFSWIRGEIGLRI 143
S + G I L+I
Sbjct: 726 DKSAVSGAIRLQI 738
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP) (By similarity). Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Mus musculus (taxid: 10090) |
| >sp|Q62769|UN13B_RAT Protein unc-13 homolog B OS=Rattus norvegicus GN=Unc13b PE=1 SV=2 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
K+ + VV A+ L KD GSS PYV +KRT T F +LNPVW E F + +
Sbjct: 614 KITITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIFGNLNPVWEEKFHFECHNSSD 673
Query: 77 MDCEELEIEVYNDKRYCNGSGRK------NHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130
+++ V+++ ++ + FLG+ + + D V++ LEK++
Sbjct: 674 ----RIKVRVWDEDDDIKSRVKQRLKRESDDFLGQTIIEVRTLSGEMD---VWYNLEKRT 726
Query: 131 VFSWIRGEIGLRI 143
S + G I L+I
Sbjct: 727 DKSAVSGAIRLQI 739
|
Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Is involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-depending refilling of readily releasable vesicle pool (RRP), Essential for synaptic vesicle maturation in a subset of excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Rattus norvegicus (taxid: 10116) |
| >sp|Q62770|UN13C_RAT Protein unc-13 homolog C OS=Rattus norvegicus GN=Unc13c PE=1 SV=3 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
K+ + VV A+ L KD GSS PYV ++RT T F +LNPVW+E F +
Sbjct: 1211 KITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFYFECHNS-- 1268
Query: 77 MDCEELEIEVYNDKRYCNGSGRK------NHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130
+ +++ V+++ ++ + FLG+ + + D V++ LEK++
Sbjct: 1269 --TDRIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLSGEMD---VWYNLEKRT 1323
Query: 131 VFSWIRGEIGLRI 143
S + G I L+I
Sbjct: 1324 DKSAVSGAIRLKI 1336
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Rattus norvegicus (taxid: 10116) |
| >sp|Q8NB66|UN13C_HUMAN Protein unc-13 homolog C OS=Homo sapiens GN=UNC13C PE=2 SV=3 | Back alignment and function description |
|---|
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 13/133 (9%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
K+ + VV A+ L KD GSS PYV ++RT T F +LNPVW+E F +
Sbjct: 1221 KITITVVSAQGLQAKDKTGSSDPYVTVQVGKNKRRTKTIFGNLNPVWDEKFYFECHNS-- 1278
Query: 77 MDCEELEIEVYNDKRYCNGSGRK------NHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130
+ +++ V+++ ++ + FLG+ + + D V++ LEK++
Sbjct: 1279 --TDRIKVRVWDEDDDIKSRVKQHFKKESDDFLGQTIVEVRTLSGEMD---VWYNLEKRT 1333
Query: 131 VFSWIRGEIGLRI 143
S + G I L+I
Sbjct: 1334 DKSAVSGAIRLKI 1346
|
May play a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. May be involved in the regulation of synaptic transmission at parallel fiber - Purkinje cell synapses. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1006 | ||||||
| 357477443 | 1036 | Unc-13-like protein [Medicago truncatula | 0.977 | 0.948 | 0.741 | 0.0 | |
| 356512491 | 1025 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.956 | 0.755 | 0.0 | |
| 449469663 | 1028 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.947 | 0.760 | 0.0 | |
| 449528986 | 1033 | PREDICTED: uncharacterized LOC101219043 | 0.968 | 0.942 | 0.760 | 0.0 | |
| 297839347 | 1078 | C2 domain-containing protein [Arabidopsi | 0.982 | 0.916 | 0.719 | 0.0 | |
| 255540917 | 1044 | conserved hypothetical protein [Ricinus | 0.977 | 0.941 | 0.739 | 0.0 | |
| 224090973 | 1023 | predicted protein [Populus trichocarpa] | 0.967 | 0.951 | 0.751 | 0.0 | |
| 15221349 | 1081 | C2 calcium/lipid-binding plant phosphori | 0.983 | 0.914 | 0.716 | 0.0 | |
| 225456679 | 1009 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.965 | 0.762 | 0.0 | |
| 5882720 | 1276 | Similar to gb|D86180 phosphoribosylanthr | 0.976 | 0.769 | 0.716 | 0.0 |
| >gi|357477443|ref|XP_003609007.1| Unc-13-like protein [Medicago truncatula] gi|355510062|gb|AES91204.1| Unc-13-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1530 bits (3961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 765/1031 (74%), Positives = 861/1031 (83%), Gaps = 48/1031 (4%)
Query: 2 TTPSQPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNP 61
TTP Q P Q TVR+L VEVVDAR+LLPKDGQGSSSPYV+ADFDGQRKRT+T+F++LNP
Sbjct: 3 TTPFQQGPPQ--TVRRLAVEVVDARNLLPKDGQGSSSPYVVADFDGQRKRTTTRFKELNP 60
Query: 62 VWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGL 121
VWNE LEFIVSDP NM+ EELE+EVYNDK++ NGSGRKNHFLGRVKL G+QF RG+E L
Sbjct: 61 VWNELLEFIVSDPDNMEFEELEVEVYNDKKFGNGSGRKNHFLGRVKLYGTQFFGRGEEAL 120
Query: 122 VYFPLEKKSVFSWIRGEIGLRIYYYDEL-----------------SEEEHQHPPPPQDEP 164
VY+ LEKKSVFSWIRGEIGL+IYYYDEL EE +H + E
Sbjct: 121 VYYTLEKKSVFSWIRGEIGLKIYYYDELLQQDEQQQQQQDQPSQPPPEEERHGGGAEQE- 179
Query: 165 PPPQPPQQQPGVCVVEEGRVFEVPGGHVEVCHPVPEIYHGQPPPQAPIIEESQPHGVHVQ 224
+ +VEEGRVF+V +E C P+P+ G P P+ ++EES V VQ
Sbjct: 180 ---RNNHSHRHPMMVEEGRVFQVE--QMEHCVPLPD---GPPSPRVVVMEESPSPVVRVQ 231
Query: 225 PEPVQIPPHDEPIPTAV---PAAEIRKMQSGCAERVNVLKRPNG----DYSPKVINSSKP 277
+P + +P P E+RKMQ+ +RV ++KRPNG DY+PK I+ KP
Sbjct: 232 QDPPLPEMYAQPEPEMQYHHHHPEVRKMQTMRNDRVKIMKRPNGNGNGDYAPKDISGKKP 291
Query: 278 NGEVPTERIHPYDLVEPMMYLFVKIRKARGLVP-NEAPYVKIRTSSHYKKSKLASYRACD 336
NGE +ERIHPYDLVEPM YLFV+I K RGL P E+P+VK+RTSSHY +SK AS+R +
Sbjct: 292 NGE--SERIHPYDLVEPMQYLFVRIVKVRGLNPPTESPFVKVRTSSHYVRSKPASFRPNE 349
Query: 337 PHDSPEWNQVFALFHNKNDSVSATLEITVWDSPTENFLGGVCFDLSDVPVRDPPDSPLAP 396
P+DSPEWNQVFAL ++K D+ ATLEI+VWDSPTE FLGGVCFDLSDVP+RD PDSPLAP
Sbjct: 350 PNDSPEWNQVFALGYSKTDATGATLEISVWDSPTEQFLGGVCFDLSDVPIRDSPDSPLAP 409
Query: 397 QWYRLEGEASDQNN-RVSGDIQLAVWIGTQADEAFPEAWSSDAPYVTHTRSKVYQSPKLW 455
QWYRLEG A++QN RVSGDIQL+VWIGTQ+D+AFPEAWSSDAPYV HTRSKVYQSPKLW
Sbjct: 410 QWYRLEGGAAEQNAVRVSGDIQLSVWIGTQSDDAFPEAWSSDAPYVAHTRSKVYQSPKLW 469
Query: 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFV 515
YLRVTVMEAQDL + NLPPLTAPEIRVK QL QS RTRRGSMN+HS SFHWHED+ FV
Sbjct: 470 YLRVTVMEAQDLNLTPNLPPLTAPEIRVKVQLGFQSQRTRRGSMNHHSMSFHWHEDLLFV 529
Query: 516 AAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGC 575
A EP EDS++LLVEDRT K+AA +LGH V+P++SI+QRID+RHV +KWFPLEG
Sbjct: 530 AGEPLEDSMVLLVEDRTTKEAA--LLGHVVIPLTSIEQRIDDRHVPAKWFPLEGG----- 582
Query: 576 ARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMK 635
SYCGR+ L+LCLEGGYHVLDEAAHVCSDFRPTAK LWKPPVGILELGILGARGLLPMK
Sbjct: 583 --SYCGRVHLRLCLEGGYHVLDEAAHVCSDFRPTAKSLWKPPVGILELGILGARGLLPMK 640
Query: 636 TKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRM 695
+K GKGSTD+YCVAKYGKKWVRTRT+TD FDPRWNEQYTWQVYDPCTVLTVGVFDNWRM
Sbjct: 641 SKGPGKGSTDSYCVAKYGKKWVRTRTVTDSFDPRWNEQYTWQVYDPCTVLTVGVFDNWRM 700
Query: 696 FADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSM 755
FAD +EE+PD RIGKIRIRVSTLE+NK+YT+SYPLLVL R GLKKMGEIELAVRF C
Sbjct: 701 FADVAEEKPDCRIGKIRIRVSTLESNKIYTSSYPLLVLTRNGLKKMGEIELAVRFACHGF 760
Query: 756 LPETSSVYGQPLLPRMHYLRPLGVAQQEALRGAATKMVAAWLDRSEPPLGPEVVRYMLDA 815
P+T +VY QPLLP+MHY+RPLGVAQQEALRGAATKMVA WL RSEPP+G EVVRYMLDA
Sbjct: 761 FPDTCAVYQQPLLPKMHYIRPLGVAQQEALRGAATKMVAQWLARSEPPMGHEVVRYMLDA 820
Query: 816 DSHAWSMRKSKANWFRIVAVLAWAIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWYPDLI 875
DSHAWSMRKSKANWFRIVAVLAWA+GLAKWL +IRRWKNPVTTVL+H+LYLVLVWYPDLI
Sbjct: 821 DSHAWSMRKSKANWFRIVAVLAWAVGLAKWLDDIRRWKNPVTTVLLHILYLVLVWYPDLI 880
Query: 876 VPTGFLYVVLIGVWYYRFRPKIPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMR 935
VPTGFLYVVLIG+WYYRFRPKIP+GMDTRLSQAE VDPDELDEEFDT+PSSKPP+++R+R
Sbjct: 881 VPTGFLYVVLIGIWYYRFRPKIPAGMDTRLSQAEAVDPDELDEEFDTMPSSKPPDLVRVR 940
Query: 936 YDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVA 995
YDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVC VI ++LY VPPKMVA
Sbjct: 941 YDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCLVIAVILYSVPPKMVA 1000
Query: 996 VALGFYYLRHP 1006
VALGFYYLRHP
Sbjct: 1001 VALGFYYLRHP 1011
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512491|ref|XP_003524952.1| PREDICTED: uncharacterized protein LOC100783882 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1526 bits (3950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 774/1025 (75%), Positives = 863/1025 (84%), Gaps = 45/1025 (4%)
Query: 1 MTTPSQPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLN 60
MTTP Q PPQ TVR+LVVEVVDAR+LLPKDGQGSSSPYV+ADFDGQRKRT+T+F++LN
Sbjct: 2 MTTPFQQPPQ---TVRRLVVEVVDARNLLPKDGQGSSSPYVVADFDGQRKRTTTRFKELN 58
Query: 61 PVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEG 120
PVWNEPLEFIVSDP+NM+ EELE+EVYNDK++ NGSGRKNHFLGRVKL G+QF+RRG+E
Sbjct: 59 PVWNEPLEFIVSDPENMEFEELEVEVYNDKKFGNGSGRKNHFLGRVKLYGTQFSRRGEEA 118
Query: 121 LVYFPLEKKSVFSWIRGEIGLRIYYYDEL------------SEEEHQHPPPPQDEPPPPQ 168
LVY+ LEK+SVFSWIRGEIGLRIYYYDE+ ++E Q QD PP
Sbjct: 119 LVYYTLEKRSVFSWIRGEIGLRIYYYDEMLMEEEKPPPPPQQQQEEQGERTEQDRNKPP- 177
Query: 169 PPQQQPGVCVVEEGRVFEVPGGHVEVCHPVPEIYHGQPPPQAP---IIEESQPHGVHVQP 225
PGV VVEEGRVFE PG +E C P+P PP +P ++ ES P VHV
Sbjct: 178 -----PGVVVVEEGRVFEAPGA-MEQCVPLP-----SGPPHSPRVVVVAESPPPVVHVSQ 226
Query: 226 EPVQIPPHDEPIPTAVPAAEIRKMQSGCAERVNVLKRPNGDYSPKVINSSKPNGEVPTER 285
+P + P E+RKMQ+ RV +LKRPNGDY PK I+ K E +ER
Sbjct: 227 DPPLAEMCEPPASEMQFHPEVRKMQANRGNRVKILKRPNGDYLPKDISGKKTGNE--SER 284
Query: 286 IHPYDLVEPMMYLFVKIRKARGLVP-NEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWN 344
+HP+DLVEPM YLFVKI KARGL P +E P V++R SS ++S ASYR +P DSPEWN
Sbjct: 285 VHPFDLVEPMQYLFVKIWKARGLAPPSEGPIVRVRMSSQSRRSNPASYRPSEPPDSPEWN 344
Query: 345 QVFAL-FHNKNDSVSATLEITVWDSPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEG 403
Q FAL ++N ND+ SATLEI+VWDSPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEG
Sbjct: 345 QTFALSYNNTNDANSATLEISVWDSPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEG 404
Query: 404 EASDQN-NRVSGDIQLAVWIGTQADEAFPEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVM 462
+DQN RVSGDIQL+VWIGTQ+D+AFPEAW SDAPYV HTRSKVYQSPKLWYLRVTV+
Sbjct: 405 GTADQNPGRVSGDIQLSVWIGTQSDDAFPEAWISDAPYVAHTRSKVYQSPKLWYLRVTVV 464
Query: 463 EAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFED 522
EAQDL IA NLPPLTAPE+RVK +L QS RTRRGSMN+ S SFHW+ED+ FVA EP ED
Sbjct: 465 EAQDLNIAPNLPPLTAPEVRVKVELGFQSQRTRRGSMNHRSLSFHWNEDLLFVAGEPLED 524
Query: 523 SLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGR 582
S+I+L+EDRT K+ A +LGH V+P+SSI+QRIDERHVA+KWF LEG YCGR
Sbjct: 525 SVIVLLEDRTTKEPA--LLGHIVIPLSSIEQRIDERHVAAKWFTLEGG-------PYCGR 575
Query: 583 IQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKG 642
+Q++LCLEGGYHVLDEAAHVCSDFRPTAKQLWKP VGILELGILGARGLLPMK+K GGKG
Sbjct: 576 VQMRLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPAVGILELGILGARGLLPMKSKGGGKG 635
Query: 643 STDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEE 702
STDAYCVAKYGKKWVRTRT+TD FDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD SE+
Sbjct: 636 STDAYCVAKYGKKWVRTRTVTDTFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADVSED 695
Query: 703 -RPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSS 761
RPD RIGK+RIRVSTLE+N++YT SYPLLVL RTGLKKMGEIELAVRF CPS+LP+T +
Sbjct: 696 HRPDCRIGKVRIRVSTLESNRIYTNSYPLLVLTRTGLKKMGEIELAVRFACPSLLPDTCA 755
Query: 762 VYGQPLLPRMHYLRPLGVAQQEALRGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWS 821
VY QPLLPRMHYLRPLGVAQQEALRGA+TKMVA WL RSEPPLG EVVRYMLDADSH WS
Sbjct: 756 VYAQPLLPRMHYLRPLGVAQQEALRGASTKMVAQWLARSEPPLGHEVVRYMLDADSHVWS 815
Query: 822 MRKSKANWFRIVAVLAWAIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWYPDLIVPTGFL 881
MRKSKANWFRIVAVLAWA+GLAKWL +IRRWKNPVTTVL+H+LYLVLVWYPDLIVPT FL
Sbjct: 816 MRKSKANWFRIVAVLAWAVGLAKWLDDIRRWKNPVTTVLLHILYLVLVWYPDLIVPTAFL 875
Query: 882 YVVLIGVWYYRFRPKIPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRM 941
YVVLIG+WYYRFRPKIP+GMDTRLSQAE VDPDELDEEFDT+PSSKPP++IRMRYDRLRM
Sbjct: 876 YVVLIGIWYYRFRPKIPAGMDTRLSQAEAVDPDELDEEFDTMPSSKPPDVIRMRYDRLRM 935
Query: 942 LAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFY 1001
LAARVQTVLGDFATQGER+QALVSWRDPRATKLFIGVC IT+ LY +PPKMVAVALGFY
Sbjct: 936 LAARVQTVLGDFATQGERLQALVSWRDPRATKLFIGVCLTITVALYAMPPKMVAVALGFY 995
Query: 1002 YLRHP 1006
YLRHP
Sbjct: 996 YLRHP 1000
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469663|ref|XP_004152538.1| PREDICTED: uncharacterized protein LOC101219043 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1515 bits (3923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/1001 (76%), Positives = 853/1001 (85%), Gaps = 27/1001 (2%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSD 73
TVRKLVVEV DAR+LLPKDGQGSSSPYV+ADFDGQRKRT+TKFR+LNPVWNEPLEFIVSD
Sbjct: 22 TVRKLVVEVADARNLLPKDGQGSSSPYVVADFDGQRKRTATKFRELNPVWNEPLEFIVSD 81
Query: 74 PKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFS 133
P NMD EEL+IEV+NDKRY NGSGRKNHFLGRVKL GSQFA+RGDEGLVY+ LEKKSVFS
Sbjct: 82 PDNMDYEELDIEVFNDKRYGNGSGRKNHFLGRVKLYGSQFAKRGDEGLVYYQLEKKSVFS 141
Query: 134 WIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPPQPPQQQPGVCVVEEGRVFEVPGGHVE 193
WIRGEIGLRI YYDEL EE PPP +++PPPP + VVEE R+FE+P
Sbjct: 142 WIRGEIGLRICYYDELVEEAPPPPPPQEEQPPPPTEKPKT-PEAVVEEVRMFELP----- 195
Query: 194 VCHPVPEIYHGQPPPQAP---IIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIRKMQ 250
P+ G+ +P +IEES + V EP + P A E+R+MQ
Sbjct: 196 -----PQGEVGRDDSNSPPVVVIEESPRQDMPVHSEPPPPEVNGPPPGEGQFAPEMRRMQ 250
Query: 251 S----GCAERVNVLKRPNGDYSPKVINSSKPNGEVPTERIHPYDLVEPMMYLFVKIRKAR 306
S G E + VL+RPNGDYSP+VIN TERIHPYDLVEPM YLF++I KAR
Sbjct: 251 SNRAAGFGEGIRVLRRPNGDYSPRVINKKY---MAETERIHPYDLVEPMQYLFIRIVKAR 307
Query: 307 GLVPNEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVW 366
L PNE PY++IRTS H+ KS A++R +P +SPEWN+VFAL H++ D+ + TLEI VW
Sbjct: 308 NLAPNERPYLQIRTSGHFVKSDPANHRPGEPTESPEWNRVFALRHSRLDTANTTLEIAVW 367
Query: 367 DSPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQN-NRVSGDIQLAVWIGTQ 425
D+ +E FLGGVCFDLSDVPVRDPPDSPLAPQWYRLEG A DQ +++SGDIQL+VWIGTQ
Sbjct: 368 DTSSEQFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGGAGDQQPSKISGDIQLSVWIGTQ 427
Query: 426 ADEAFPEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKA 485
AD+AFPEAW SDAP+V HTRSKVYQSPKLWYLRV+V+EAQDL IA NLPPLTAPEIRVKA
Sbjct: 428 ADDAFPEAWCSDAPHVAHTRSKVYQSPKLWYLRVSVIEAQDLHIASNLPPLTAPEIRVKA 487
Query: 486 QLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAV 545
QL+ QSARTRRGSMNNHS+SFHW+ED+ FVA EP EDSLILLVEDRT+K+A ++LGH +
Sbjct: 488 QLSFQSARTRRGSMNNHSASFHWNEDLVFVAGEPLEDSLILLVEDRTSKEA--ILLGHVM 545
Query: 546 VPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSD 605
+PV +++QR DER+VA+KW+ LEG G +Y GRI L+LCLEGGYHVLDEAAHVCSD
Sbjct: 546 IPVDTVEQRFDERYVAAKWYSLEGGNG---GETYSGRIYLRLCLEGGYHVLDEAAHVCSD 602
Query: 606 FRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDC 665
FRPTAKQLWK VGILELGILGARGLLPMKTK+ GKGSTDAYCVAKYGKKWVRTRT+TD
Sbjct: 603 FRPTAKQLWKSAVGILELGILGARGLLPMKTKDPGKGSTDAYCVAKYGKKWVRTRTMTDS 662
Query: 666 FDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYT 725
FDPRWNEQYTWQVYDPCTVLT+GVFDNWRM++DASE++PDY IGK+RIRVSTLE+NK+YT
Sbjct: 663 FDPRWNEQYTWQVYDPCTVLTIGVFDNWRMYSDASEDKPDYHIGKVRIRVSTLESNKIYT 722
Query: 726 TSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLPRMHYLRPLGVAQQEAL 785
SYPLLVL RTGLKKMGEIELAVRF CP++LP+T +VYGQPLLPRMHYLRPLGVAQQEAL
Sbjct: 723 NSYPLLVLQRTGLKKMGEIELAVRFACPALLPDTCAVYGQPLLPRMHYLRPLGVAQQEAL 782
Query: 786 RGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAIGLAKW 845
R AATKMVA WL RSEPPLG EVVRYMLDADSHAWSMRKSKANWFRIVAVLAWA+GLAKW
Sbjct: 783 RRAATKMVATWLGRSEPPLGSEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAVGLAKW 842
Query: 846 LHNIRRWKNPVTTVLVHVLYLVLVWYPDLIVPTGFLYVVLIGVWYYRFRPKIPSGMDTRL 905
L +IRRW+NP+TT+LVH+LYLVLVWYPDLIVPTGFLYV LIGVWYYRFRPKIP+GMDTRL
Sbjct: 843 LDDIRRWRNPITTMLVHILYLVLVWYPDLIVPTGFLYVFLIGVWYYRFRPKIPAGMDTRL 902
Query: 906 SQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQALVS 965
S AE VDPDELDEEFDTIPSSKPP+IIR+RYDRLR+LAARVQTVLGD ATQGERVQALVS
Sbjct: 903 SHAEAVDPDELDEEFDTIPSSKPPDIIRVRYDRLRILAARVQTVLGDLATQGERVQALVS 962
Query: 966 WRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFYYLRHP 1006
WRDPRATKLFIGVC ITL+LY VPPKMVAVALGFYYLRHP
Sbjct: 963 WRDPRATKLFIGVCFAITLILYAVPPKMVAVALGFYYLRHP 1003
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449528986|ref|XP_004171482.1| PREDICTED: uncharacterized LOC101219043 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1515 bits (3922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/1001 (76%), Positives = 853/1001 (85%), Gaps = 27/1001 (2%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSD 73
TVRKLVVEV DAR+LLPKDGQGSSSPYV+ADFDGQRKRT+TKFR+LNPVWNEPLEFIVSD
Sbjct: 27 TVRKLVVEVADARNLLPKDGQGSSSPYVVADFDGQRKRTATKFRELNPVWNEPLEFIVSD 86
Query: 74 PKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFS 133
P NMD EEL+IEV+NDKRY NGSGRKNHFLGRVKL GSQFA+RGDEGLVY+ LEKKSVFS
Sbjct: 87 PDNMDYEELDIEVFNDKRYGNGSGRKNHFLGRVKLYGSQFAKRGDEGLVYYQLEKKSVFS 146
Query: 134 WIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPPQPPQQQPGVCVVEEGRVFEVPGGHVE 193
WIRGEIGLRI YYDEL EE PPP +++PPPP + VVEE R+FE+P
Sbjct: 147 WIRGEIGLRICYYDELVEEAPPPPPPQEEQPPPPTEKPKT-PEAVVEEVRMFELP----- 200
Query: 194 VCHPVPEIYHGQPPPQAP---IIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIRKMQ 250
P+ G+ +P +IEES + V EP + P A E+R+MQ
Sbjct: 201 -----PQGEVGRDDSNSPPVVVIEESPRQDMPVHSEPPPPEVNGPPPGEGQFAPEMRRMQ 255
Query: 251 S----GCAERVNVLKRPNGDYSPKVINSSKPNGEVPTERIHPYDLVEPMMYLFVKIRKAR 306
S G E + VL+RPNGDYSP+VIN TERIHPYDLVEPM YLF++I KAR
Sbjct: 256 SNRAAGFGEGIRVLRRPNGDYSPRVINKKY---MAETERIHPYDLVEPMQYLFIRIVKAR 312
Query: 307 GLVPNEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVW 366
L PNE PY++IRTS H+ KS A++R +P +SPEWN+VFAL H++ D+ + TLEI VW
Sbjct: 313 NLAPNERPYLQIRTSGHFVKSDPANHRPGEPTESPEWNRVFALRHSRLDTANTTLEIAVW 372
Query: 367 DSPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQN-NRVSGDIQLAVWIGTQ 425
D+ +E FLGGVCFDLSDVPVRDPPDSPLAPQWYRLEG A DQ +++SGDIQL+VWIGTQ
Sbjct: 373 DTSSEQFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGGAGDQQPSKISGDIQLSVWIGTQ 432
Query: 426 ADEAFPEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKA 485
AD+AFPEAW SDAP+V HTRSKVYQSPKLWYLRV+V+EAQDL IA NLPPLTAPEIRVKA
Sbjct: 433 ADDAFPEAWCSDAPHVAHTRSKVYQSPKLWYLRVSVIEAQDLHIASNLPPLTAPEIRVKA 492
Query: 486 QLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAV 545
QL+ QSARTRRGSMNNHS+SFHW+ED+ FVA EP EDSLILLVEDRT+K+A ++LGH +
Sbjct: 493 QLSFQSARTRRGSMNNHSASFHWNEDLVFVAGEPLEDSLILLVEDRTSKEA--ILLGHVM 550
Query: 546 VPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSD 605
+PV +++QR DER+VA+KW+ LEG G +Y GRI L+LCLEGGYHVLDEAAHVCSD
Sbjct: 551 IPVDTVEQRFDERYVAAKWYSLEGGNG---GETYSGRIYLRLCLEGGYHVLDEAAHVCSD 607
Query: 606 FRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDC 665
FRPTAKQLWK VGILELGILGARGLLPMKTK+ GKGSTDAYCVAKYGKKWVRTRT+TD
Sbjct: 608 FRPTAKQLWKSAVGILELGILGARGLLPMKTKDPGKGSTDAYCVAKYGKKWVRTRTMTDS 667
Query: 666 FDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYT 725
FDPRWNEQYTWQVYDPCTVLT+GVFDNWRM++DASE++PDY IGK+RIRVSTLE+NK+YT
Sbjct: 668 FDPRWNEQYTWQVYDPCTVLTIGVFDNWRMYSDASEDKPDYHIGKVRIRVSTLESNKIYT 727
Query: 726 TSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLPRMHYLRPLGVAQQEAL 785
SYPLLVL RTGLKKMGEIELAVRF CP++LP+T +VYGQPLLPRMHYLRPLGVAQQEAL
Sbjct: 728 NSYPLLVLQRTGLKKMGEIELAVRFACPALLPDTCAVYGQPLLPRMHYLRPLGVAQQEAL 787
Query: 786 RGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAIGLAKW 845
R AATKMVA WL RSEPPLG EVVRYMLDADSHAWSMRKSKANWFRIVAVLAWA+GLAKW
Sbjct: 788 RRAATKMVATWLGRSEPPLGSEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAVGLAKW 847
Query: 846 LHNIRRWKNPVTTVLVHVLYLVLVWYPDLIVPTGFLYVVLIGVWYYRFRPKIPSGMDTRL 905
L +IRRW+NP+TT+LVH+LYLVLVWYPDLIVPTGFLYV LIGVWYYRFRPKIP+GMDTRL
Sbjct: 848 LDDIRRWRNPITTMLVHILYLVLVWYPDLIVPTGFLYVFLIGVWYYRFRPKIPAGMDTRL 907
Query: 906 SQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQALVS 965
S AE VDPDELDEEFDTIPSSKPP+IIR+RYDRLR+LAARVQTVLGD ATQGERVQALVS
Sbjct: 908 SHAEAVDPDELDEEFDTIPSSKPPDIIRVRYDRLRILAARVQTVLGDLATQGERVQALVS 967
Query: 966 WRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFYYLRHP 1006
WRDPRATKLFIGVC ITL+LY VPPKMVAVALGFYYLRHP
Sbjct: 968 WRDPRATKLFIGVCFAITLILYAVPPKMVAVALGFYYLRHP 1008
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839347|ref|XP_002887555.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333396|gb|EFH63814.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1509 bits (3906), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 768/1068 (71%), Positives = 860/1068 (80%), Gaps = 80/1068 (7%)
Query: 2 TTP--SQPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDL 59
TTP S PPP + RKLVVEVV+AR++LPKDGQGSSS YV+ DFD Q+KRTSTKFRDL
Sbjct: 3 TTPFHSDPPPSR--IQRKLVVEVVEARNILPKDGQGSSSAYVVVDFDAQKKRTSTKFRDL 60
Query: 60 NPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDE 119
NP+WNE L+F VSDPKNMD +EL++EVYNDKR+ NG GRKNHFLGRVK+ GSQF+RRG+E
Sbjct: 61 NPIWNEMLDFTVSDPKNMDYDELDVEVYNDKRFGNGGGRKNHFLGRVKIYGSQFSRRGEE 120
Query: 120 GLVYFPLEKKSVFSWIRGEIGLRIYYYDELSEEE-------------------------- 153
GLVYFPLEKKSVFSWIRGEIGL+IYYYDE ++E+
Sbjct: 121 GLVYFPLEKKSVFSWIRGEIGLKIYYYDEAADEDTAVGGGGQQQQQQFHPPQQEADEQQH 180
Query: 154 HQHPPPPQDEPPPPQPPQQQPGVCVVEEGRVFEVPGGHVEVCHPVPEIYHGQPPPQAPII 213
H HPPP Q PP+ +P V VVEEGRVFE H PE H QPP A I+
Sbjct: 181 HFHPPPQQMMNIPPE----KPNVVVVEEGRVFESAQ-----SHSYPET-HQQPP--AVIV 228
Query: 214 EESQPHGVHVQPEPVQIPPHDEPIPTAVPAA--------------EIRKMQSG---CAER 256
E+S P V P P ++ P P+ E+RKMQ G +R
Sbjct: 229 EKSPPQQVMQGPNDNH-PQRNDNYPQRPPSPPPPPSAGEVHYYPPEVRKMQVGRPPGGDR 287
Query: 257 VNVLKRP-NGDYSPKVINSSKPNGEVPTERI--HPYDLVEPMMYLFVKIRKARGLVPNEA 313
+ V KRP NGDYSP+VINS GE E+ HPY+LVEPM YLFV+I KARGL PNE+
Sbjct: 288 IRVTKRPPNGDYSPRVINSKIGGGETTMEKKTHHPYNLVEPMQYLFVRIVKARGLPPNES 347
Query: 314 PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDS--VSATLEITVWDSPTE 371
YVK+RTS+H+ +SK A R + DSPEWNQVFAL HN++DS ATLEI+ WD+ +E
Sbjct: 348 AYVKVRTSNHFVRSKPAVNRPGESVDSPEWNQVFALGHNRSDSAVTGATLEISAWDASSE 407
Query: 372 NFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNN-RVSGDIQLAVWIGTQADEAF 430
+FLGGVCFDLS+VPVRDPPDSPLAPQWYRLEG +DQN+ R+SGDIQL+VWIGTQ DEAF
Sbjct: 408 SFLGGVCFDLSEVPVRDPPDSPLAPQWYRLEGSGADQNSGRISGDIQLSVWIGTQVDEAF 467
Query: 431 PEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQ 490
PEAWSSDAP+V HTRSKVYQSPKLWYLRVTV+EAQDL IA NLPPLTAPEIRVKAQL Q
Sbjct: 468 PEAWSSDAPHVAHTRSKVYQSPKLWYLRVTVLEAQDLHIAPNLPPLTAPEIRVKAQLGFQ 527
Query: 491 SARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSS 550
SARTRRGSMNNHS SFHWHED+ FVA EP ED L+L+VEDRT K+A +LGHA++PVSS
Sbjct: 528 SARTRRGSMNNHSGSFHWHEDMIFVAGEPLEDCLVLMVEDRTTKEAT--LLGHAMIPVSS 585
Query: 551 IDQRIDERHVASKWFPLEGSCGRGCARS------------YCGRIQLKLCLEGGYHVLDE 598
I+QRIDER V SKW LEG G G YCGRI L+LCLEGGYHVL+E
Sbjct: 586 IEQRIDERFVPSKWHTLEGEGGGGGGGGGGGGPGSGGGGPYCGRISLRLCLEGGYHVLEE 645
Query: 599 AAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVR 658
AAHVCSDFRPTAKQLWKPP+GILELGILGARGLLPMK KNGGKGSTDAYCVAKYGKKWVR
Sbjct: 646 AAHVCSDFRPTAKQLWKPPIGILELGILGARGLLPMKAKNGGKGSTDAYCVAKYGKKWVR 705
Query: 659 TRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTL 718
TRTITD FDPRW+EQYTWQVYDPCTVLT+GVFDNWRMF+D S++RPD RIGKIRIRVSTL
Sbjct: 706 TRTITDSFDPRWHEQYTWQVYDPCTVLTIGVFDNWRMFSDVSDDRPDTRIGKIRIRVSTL 765
Query: 719 ENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLPRMHYLRPLG 778
E+NKVYT SYPLLVLL +G+KKMGEIE+AVRF CPS+LP+ + YGQPLLPRMHY+RPLG
Sbjct: 766 ESNKVYTNSYPLLVLLPSGMKKMGEIEVAVRFACPSLLPDVCAAYGQPLLPRMHYIRPLG 825
Query: 779 VAQQEALRGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWSMRKSKANWFRIVAVLAW 838
VAQQ+ALRGAATKMVAAWL R+EPPLGPEVVRYMLDADSHAWSMRKSKANW+RIV VLAW
Sbjct: 826 VAQQDALRGAATKMVAAWLARAEPPLGPEVVRYMLDADSHAWSMRKSKANWYRIVGVLAW 885
Query: 839 AIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWYPDLIVPTGFLYVVLIGVWYYRFRPKIP 898
A+GLAKWL NIRRW+NPVTTVLVH+LYLVLVWYPDL+VPTGFLYVV+IGVWYYRFRPKIP
Sbjct: 886 AVGLAKWLDNIRRWRNPVTTVLVHILYLVLVWYPDLVVPTGFLYVVMIGVWYYRFRPKIP 945
Query: 899 SGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQGE 958
+GMD RLSQAETVDPDELDEEFDTIPSS+ PE+IR RYDRLR+LA RVQT+LGDFA QGE
Sbjct: 946 AGMDIRLSQAETVDPDELDEEFDTIPSSRRPEVIRARYDRLRILAVRVQTILGDFAAQGE 1005
Query: 959 RVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFYYLRHP 1006
R+QALVSWRDPRATKLFI +C VIT+VLY VP KMVAVALGFYYLRHP
Sbjct: 1006 RIQALVSWRDPRATKLFIAICLVITIVLYAVPAKMVAVALGFYYLRHP 1053
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540917|ref|XP_002511523.1| conserved hypothetical protein [Ricinus communis] gi|223550638|gb|EEF52125.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1501 bits (3885), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 771/1042 (73%), Positives = 859/1042 (82%), Gaps = 59/1042 (5%)
Query: 1 MTTPSQPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLN 60
MTTP +P P + VRKL+VEV +ARDLLPKDGQGSSSPYVIA+FDGQ+KRTSTK+RDLN
Sbjct: 1 MTTPCEPAPPPRI-VRKLLVEVANARDLLPKDGQGSSSPYVIAEFDGQKKRTSTKYRDLN 59
Query: 61 PVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEG 120
P WNE LEFIVSDP NM+ EELEIEV+NDK++ NGSGRKNHFLGRVK+ G+QFARRG E
Sbjct: 60 PEWNETLEFIVSDPDNMEVEELEIEVFNDKKFGNGSGRKNHFLGRVKVYGTQFARRGQEA 119
Query: 121 LVYFPLEKKSVFSWIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPPQPPQQQPGVCVVE 180
L+YFPLEKKSVFSWIRG++GLRI YYDEL ++ Q PPPP D+ PPQ P + P V VVE
Sbjct: 120 LIYFPLEKKSVFSWIRGDLGLRICYYDELVDD--QQPPPPSDKDAPPQEPPKSPAVVVVE 177
Query: 181 EGRV-FEV-PGGHVEVCHPVPEIYHGQPPPQAPIIEESQPHGVHVQPE------------ 226
EG FEV P H+ H +H P +I ES P VHV
Sbjct: 178 EGGKVFEVTPHDHISHSH----RFHDHQFPPVVVIGESPPPVVHVHSSEPPPPGPGPGPG 233
Query: 227 -------------------PVQIPPHDEPIPTAVPAAEIRKMQSGC---AERVNVLKRPN 264
+ +PP + +P E+RKMQ +RV + +RPN
Sbjct: 234 PGPGPGSIPLPIPVPVPEPAMPLPPEADYVP------EVRKMQQSARFGGDRVRLSRRPN 287
Query: 265 GDYSPKVINSSKPNGEVPTERIHPYDLVEPMMYLFVKIRKARGLVPNEAPYVKIRTSSHY 324
GD+SP+VI+ N ER+HPYDLVEPM YLF +I KARGL PN+ P+VKIRTS+H
Sbjct: 288 GDFSPRVISGKLKNE---NERVHPYDLVEPMQYLFTRIVKARGLSPNDGPFVKIRTSTHS 344
Query: 325 KKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSPTENFLGGVCFDLSDV 384
+SK A YR +P DSPEW+QVFAL HNK DS +TLEI+VWDS TE FLGGVCFDLSDV
Sbjct: 345 VRSKPAIYRPGEPTDSPEWHQVFALGHNKPDSPCSTLEISVWDS-TEQFLGGVCFDLSDV 403
Query: 385 PVRDPPDSPLAPQWYRLEGEASDQNNRVSGDIQLAVWIGTQADEAFPEAWSSDAPYVTHT 444
PVRDPPDSPLAPQWYRLE ++RVSGDIQL+VWIGTQ D+AFPEAWSSDAPYV HT
Sbjct: 404 PVRDPPDSPLAPQWYRLESGPDQNSSRVSGDIQLSVWIGTQNDDAFPEAWSSDAPYVAHT 463
Query: 445 RSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSS 504
RSKVYQSPKLWYLRVTV+EAQDL IA NLPPLTAPEIRVKA L QS R+RRGSMNNH++
Sbjct: 464 RSKVYQSPKLWYLRVTVIEAQDLQIASNLPPLTAPEIRVKAHLGFQSVRSRRGSMNNHTT 523
Query: 505 SFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKW 564
SFHWHED+ FVA EP EDSLIL+VEDRT+K+A + LGH ++PV+SI+QRIDERHV+SKW
Sbjct: 524 SFHWHEDLIFVAGEPLEDSLILVVEDRTSKEA--ISLGHIMIPVASIEQRIDERHVSSKW 581
Query: 565 FPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELG 624
FPLEG+ + Y GRI L+LCLEGGYHVLDEAAHVCSDFRPTAKQLWKP +GILELG
Sbjct: 582 FPLEGAA----SGFYQGRIHLRLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPAIGILELG 637
Query: 625 ILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTV 684
ILGARGLLPMK + G KGSTDAYCVAKYGKKWVRTRTITD FDPRWNEQYTWQVYDPCTV
Sbjct: 638 ILGARGLLPMKNQCGVKGSTDAYCVAKYGKKWVRTRTITDSFDPRWNEQYTWQVYDPCTV 697
Query: 685 LTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEI 744
LT+GVFDNWRMFAD SEE+PD RIGK+RIRVSTLE+NKVYT SYPLLVLLR+GLKKMGEI
Sbjct: 698 LTIGVFDNWRMFADPSEEKPDSRIGKVRIRVSTLESNKVYTNSYPLLVLLRSGLKKMGEI 757
Query: 745 ELAVRFVCPSMLPETSSVYGQPLLPRMHYLRPLGVAQQEALRGAATKMVAAWLDRSEPPL 804
E+AVRF CPS+LP+T + YGQPLLPRMHYLRPLGVAQQEALRGAATKMVA+WL RSEP L
Sbjct: 758 EVAVRFACPSLLPDTCAAYGQPLLPRMHYLRPLGVAQQEALRGAATKMVASWLARSEPAL 817
Query: 805 GPEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAIGLAKWLHNIRRWKNPVTTVLVHVL 864
G EVV+YMLDADSH WSMRKSKANWFRIVAVLAWA+GLAKWLH+IRRWKNPVTTVLVHVL
Sbjct: 818 GHEVVQYMLDADSHTWSMRKSKANWFRIVAVLAWAVGLAKWLHDIRRWKNPVTTVLVHVL 877
Query: 865 YLVLVWYPDLIVPTGFLYVVLIGVWYYRFRPKIPSGMDTRLSQAETVDPDELDEEFDTIP 924
YLVLVWYPDL+VPTGFLYVVLIGVWYYRFRPKIP+GMD RLSQAETVDPDELDEEFDTIP
Sbjct: 878 YLVLVWYPDLVVPTGFLYVVLIGVWYYRFRPKIPAGMDIRLSQAETVDPDELDEEFDTIP 937
Query: 925 SSKPPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCTVITL 984
SS+PPE+IR+RYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFI VC IT+
Sbjct: 938 SSRPPELIRVRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIAVCLAITI 997
Query: 985 VLYVVPPKMVAVALGFYYLRHP 1006
+LY+VPPKMVAVALGFYYLRHP
Sbjct: 998 ILYMVPPKMVAVALGFYYLRHP 1019
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224090973|ref|XP_002309131.1| predicted protein [Populus trichocarpa] gi|222855107|gb|EEE92654.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1499 bits (3880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/1012 (75%), Positives = 843/1012 (83%), Gaps = 39/1012 (3%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSD 73
TVRK++VEVVDARDLLPKDGQGSSS YVIADFDGQRKRT+TK+RDLNPVW E EF VSD
Sbjct: 7 TVRKVLVEVVDARDLLPKDGQGSSSAYVIADFDGQRKRTTTKYRDLNPVWKETFEFTVSD 66
Query: 74 PKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFS 133
P NM+ EELEIEV+NDK++CNGSGRKNHFLGRVK+ GSQF++RGDEG+VYFPLEKKSVFS
Sbjct: 67 PSNMEFEELEIEVFNDKKFCNGSGRKNHFLGRVKVYGSQFSKRGDEGIVYFPLEKKSVFS 126
Query: 134 WIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPPQPPQ---QQPGVCVVEEGRVFEVPGG 190
WIRGEIGLRI YYDEL EE+ Q PPPP ++ PP Q + P V +VEE RVF+V
Sbjct: 127 WIRGEIGLRICYYDELLEEDQQQPPPPPEKDAPPPQQQDPQKSPAVTMVEEVRVFQV-AE 185
Query: 191 HVEVCHPVPEIYHGQPPPQAPIIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIRKMQ 250
H E + + Q S P + P PV +R MQ
Sbjct: 186 HAEFNYHDYHHHQNDHHQQHQNGTHSPPVAIEESPPPV---------------VHVRMMQ 230
Query: 251 ----SGCAERVNVLKRPNGDYSPKVINSSKPNGEVPTERIHPYDLVEPMMYLFVKIRKAR 306
S RV +++RPNGD++PKVI S + E PTERI PYDLVEPM YLF++I KAR
Sbjct: 231 TTRESSGNNRVKIMRRPNGDFTPKVI-SGRFKSE-PTERILPYDLVEPMQYLFIRIVKAR 288
Query: 307 GLVPNEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSAT----LE 362
GL NE+P++K+RTS+H+ +SK ASYR D S EW+QVFAL HN V ++ +E
Sbjct: 289 GLSQNESPFIKLRTSTHFVRSKPASYRPGDSPGSFEWHQVFALGHNNKTDVQSSDAGIIE 348
Query: 363 ITVWDSPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLE-GEASDQNN-RVSGDIQLAV 420
I+VWDS +E FLGGVC DLSDVPVRDPPDSPLAPQWYRLE G A+DQN+ RVSGDIQL+V
Sbjct: 349 ISVWDSQSEQFLGGVCLDLSDVPVRDPPDSPLAPQWYRLESGAAADQNSCRVSGDIQLSV 408
Query: 421 WIGTQADEAFPEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPE 480
WIGTQAD+AFPEAWSSDAPYV HTRSKVYQSPKLWYLRVTV+EAQDL IA NLPPLTAPE
Sbjct: 409 WIGTQADDAFPEAWSSDAPYVAHTRSKVYQSPKLWYLRVTVIEAQDLRIASNLPPLTAPE 468
Query: 481 IRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVI 540
IRVKAQL QSA+TRRGSM+NHS+SF W ED+ FVA EP E+SLILLVEDRT K+A ++
Sbjct: 469 IRVKAQLGFQSAKTRRGSMSNHSTSFQWIEDLIFVAGEPLEESLILLVEDRTNKEA--LL 526
Query: 541 LGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCAR------SYCGRIQLKLCLEGGYH 594
LGH ++PVSSI+QRIDERHVASKWF LEG G SY GRI L+LCLEGGYH
Sbjct: 527 LGHIIIPVSSIEQRIDERHVASKWFALEGGGDTGGGGGGVNGGSYRGRIHLRLCLEGGYH 586
Query: 595 VLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK 654
VLDEAAHVCSDFRPTAKQLWKP +G+LELGILGARGLLPMKTK GGKGSTDAYCVAK+GK
Sbjct: 587 VLDEAAHVCSDFRPTAKQLWKPAIGVLELGILGARGLLPMKTKGGGKGSTDAYCVAKFGK 646
Query: 655 KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIR 714
KWVRTRTITD FDPRWNEQYTWQVYDPCTVLT+GVFDNW MF D S+++PD RIGKIRIR
Sbjct: 647 KWVRTRTITDSFDPRWNEQYTWQVYDPCTVLTIGVFDNWHMFGDMSDDKPDCRIGKIRIR 706
Query: 715 VSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLPRMHYL 774
VSTLE+NKVYT SYPLLVLLRTGLKKMGEIELAVRF CPS+LP+T + YGQPLLP+MHYL
Sbjct: 707 VSTLESNKVYTNSYPLLVLLRTGLKKMGEIELAVRFACPSLLPDTCAAYGQPLLPKMHYL 766
Query: 775 RPLGVAQQEALRGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWSMRKSKANWFRIVA 834
RPLGVAQQEALRGAAT+MV+ WL RSEPPLGPEVVRYMLDADSH WSMRKSKANWFRIVA
Sbjct: 767 RPLGVAQQEALRGAATRMVSLWLARSEPPLGPEVVRYMLDADSHTWSMRKSKANWFRIVA 826
Query: 835 VLAWAIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWYPDLIVPTGFLYVVLIGVWYYRFR 894
VLAWA+GLAKWL +IRRW+N VTTVLVH LYLVLVWYPDL+VPTGFLYV+LIGVWYYRFR
Sbjct: 827 VLAWAVGLAKWLDDIRRWRNSVTTVLVHALYLVLVWYPDLVVPTGFLYVILIGVWYYRFR 886
Query: 895 PKIPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFA 954
PKIP+GMD RLSQAETVDPDELDEEFDTIPS KPPEIIR RYDRLR+LAARVQTVLGDFA
Sbjct: 887 PKIPAGMDIRLSQAETVDPDELDEEFDTIPSMKPPEIIRARYDRLRVLAARVQTVLGDFA 946
Query: 955 TQGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFYYLRHP 1006
TQGERVQALVSWRDPRATKLFIGVC ITL+LYVVPPKMVAVALGFYYLRHP
Sbjct: 947 TQGERVQALVSWRDPRATKLFIGVCLAITLILYVVPPKMVAVALGFYYLRHP 998
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221349|ref|NP_177610.1| C2 calcium/lipid-binding plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] gi|219381913|gb|ACL14176.1| quirky [Arabidopsis thaliana] gi|332197505|gb|AEE35626.1| C2 calcium/lipid-binding plant phosphoribosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1498 bits (3878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 767/1070 (71%), Positives = 859/1070 (80%), Gaps = 81/1070 (7%)
Query: 2 TTP--SQPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDL 59
TTP S PPP + RKLVVEVV+AR++LPKDGQGSSS YV+ DFD Q+KRTSTKFRDL
Sbjct: 3 TTPFHSDPPPSR--IQRKLVVEVVEARNILPKDGQGSSSAYVVVDFDAQKKRTSTKFRDL 60
Query: 60 NPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDE 119
NP+WNE L+F VSDPKNMD +EL+IEVYNDKR+ NG GRKNHFLGRVK+ GSQF+RRG+E
Sbjct: 61 NPIWNEMLDFAVSDPKNMDYDELDIEVYNDKRFGNGGGRKNHFLGRVKIYGSQFSRRGEE 120
Query: 120 GLVYFPLEKKSVFSWIRGEIGLRIYYYDELSEEEHQ---------------HPPPPQDEP 164
GLVYFPLEKKSVFSWIRGEIGL+IYYYDE ++E+ HPP + +
Sbjct: 121 GLVYFPLEKKSVFSWIRGEIGLKIYYYDEAADEDTAGGGGGQQQQQQQQQFHPPQQEADE 180
Query: 165 PPPQP------------PQQQPGVCVVEEGRVFEVPGG--HVEVCHPVPEIYHGQPPPQA 210
Q P ++P V VVEEGRVFE + E H QPP
Sbjct: 181 QQHQQQFHPPPQQMMNIPPEKPNVVVVEEGRVFESAQSQRYTET--------HQQPP--V 230
Query: 211 PIIEESQPHGVHVQPEPVQIPPH-DEPIPTAVPAA--------------EIRKMQSG--- 252
I+EES P HV P PH ++ P P+ E+RKMQ G
Sbjct: 231 VIVEESPPQ--HVMQGPNDNHPHRNDNHPQRPPSPPPPPSAGEVHYYPPEVRKMQVGRPP 288
Query: 253 CAERVNVLKRP-NGDYSPKVINSSKPNGEVPTERI--HPYDLVEPMMYLFVKIRKARGLV 309
+R+ V KRP NGDYSP+VINS GE E+ HPY+LVEPM YLFV+I KARGL
Sbjct: 289 GGDRIRVTKRPPNGDYSPRVINSKTGGGETTMEKKTHHPYNLVEPMQYLFVRIVKARGLP 348
Query: 310 PNEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDS--VSATLEITVWD 367
PNE+ YVK+RTS+H+ +SK A R + DSPEWNQVFAL HN++DS ATLEI+ WD
Sbjct: 349 PNESAYVKVRTSNHFVRSKPAVNRPGESVDSPEWNQVFALGHNRSDSAVTGATLEISAWD 408
Query: 368 SPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNN-RVSGDIQLAVWIGTQA 426
+ +E+FLGGVCFDLS+VPVRDPPDSPLAPQWYRLEG +DQN+ R+SGDIQL+VWIGTQ
Sbjct: 409 ASSESFLGGVCFDLSEVPVRDPPDSPLAPQWYRLEGSGADQNSGRISGDIQLSVWIGTQV 468
Query: 427 DEAFPEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQ 486
DEAFPEAWSSDAP+V HTRSKVYQSPKLWYLRVTV+EAQDL IA NLPPLTAPEIRVKAQ
Sbjct: 469 DEAFPEAWSSDAPHVAHTRSKVYQSPKLWYLRVTVLEAQDLHIAPNLPPLTAPEIRVKAQ 528
Query: 487 LALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVV 546
L QSARTRRGSMNNHS SFHWHED+ FVA EP ED L+L+VEDRT K+A +LGHA++
Sbjct: 529 LGFQSARTRRGSMNNHSGSFHWHEDMIFVAGEPLEDCLVLMVEDRTTKEA--TLLGHAMI 586
Query: 547 PVSSIDQRIDERHVASKWFPLEGSCGRGCARS----------YCGRIQLKLCLEGGYHVL 596
PVSSI+QRIDER V SKW LEG G G YCGRI L+LCLEGGYHVL
Sbjct: 587 PVSSIEQRIDERFVPSKWHTLEGEGGGGGGGGGPGGGGGGGPYCGRISLRLCLEGGYHVL 646
Query: 597 DEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW 656
+EAAHVCSDFRPTAKQLWKPP+GILELGILGARGLLPMK KNGGKGSTDAYCVAKYGKKW
Sbjct: 647 EEAAHVCSDFRPTAKQLWKPPIGILELGILGARGLLPMKAKNGGKGSTDAYCVAKYGKKW 706
Query: 657 VRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVS 716
VRTRTITD FDPRW+EQYTWQVYDPCTVLTVGVFDNWRMF+DAS++RPD RIGKIRIRVS
Sbjct: 707 VRTRTITDSFDPRWHEQYTWQVYDPCTVLTVGVFDNWRMFSDASDDRPDTRIGKIRIRVS 766
Query: 717 TLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLPRMHYLRP 776
TLE+NKVYT SYPLLVLL +G+KKMGEIE+AVRF CPS+LP+ + YGQPLLPRMHY+RP
Sbjct: 767 TLESNKVYTNSYPLLVLLPSGMKKMGEIEVAVRFACPSLLPDVCAAYGQPLLPRMHYIRP 826
Query: 777 LGVAQQEALRGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWSMRKSKANWFRIVAVL 836
LGVAQQ+ALRGAATKMVAAWL R+EPPLGPEVVRYMLDADSHAWSMRKSKANW+RIV VL
Sbjct: 827 LGVAQQDALRGAATKMVAAWLARAEPPLGPEVVRYMLDADSHAWSMRKSKANWYRIVGVL 886
Query: 837 AWAIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWYPDLIVPTGFLYVVLIGVWYYRFRPK 896
AWA+GLAKWL NIRRW+NPVTTVLVH+LYLVLVWYPDL+VPT FLYVV+IGVWYYRFRPK
Sbjct: 887 AWAVGLAKWLDNIRRWRNPVTTVLVHILYLVLVWYPDLVVPTAFLYVVMIGVWYYRFRPK 946
Query: 897 IPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQ 956
IP+GMD RLSQAETVDPDELDEEFDTIPSS+ PE+IR RYDRLR+LA RVQT+LGDFA Q
Sbjct: 947 IPAGMDIRLSQAETVDPDELDEEFDTIPSSRRPEVIRARYDRLRILAVRVQTILGDFAAQ 1006
Query: 957 GERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFYYLRHP 1006
GER+QALVSWRDPRATKLFI +C VIT+VLY VP KMVAVALGFYYLRHP
Sbjct: 1007 GERIQALVSWRDPRATKLFIAICLVITIVLYAVPAKMVAVALGFYYLRHP 1056
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456679|ref|XP_002267314.1| PREDICTED: uncharacterized protein LOC100262158 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1494 bits (3867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 775/1016 (76%), Positives = 854/1016 (84%), Gaps = 42/1016 (4%)
Query: 1 MTTPSQPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLN 60
MTT +QPPP T RKL+VE+VDARDLLPKDGQGSSSPYVI DFDG ++RT+TK+RDLN
Sbjct: 1 MTTSAQPPPPPSKTQRKLIVEIVDARDLLPKDGQGSSSPYVIVDFDGHKQRTTTKYRDLN 60
Query: 61 PVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSG--RKNHFLGRVKLCGSQFARRGD 118
PVWNE LEF+VSDP M+ EELEIEV+NDKR NG G RKNHFLGRVKL GSQFA+RG+
Sbjct: 61 PVWNEKLEFLVSDPDTMEVEELEIEVFNDKRMGNGGGSSRKNHFLGRVKLYGSQFAKRGE 120
Query: 119 EGLVYFPLEKKSVFSWIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPPQPPQQQPGVCV 178
EGLVYFPLEKKSVFSWIRGEIGLRIYYYDE EE + P E PPPQ ++P V
Sbjct: 121 EGLVYFPLEKKSVFSWIRGEIGLRIYYYDEEVVEETKTP-----EEPPPQADVKKPPV-- 173
Query: 179 VEEGRV--FEVPGGHVEVCHPVPEIYHGQPPPQAPIIEESQPHGVHVQPEPVQIPPHDEP 236
EE RV E+P +EV + G P IIEES P V +Q E
Sbjct: 174 -EESRVQSLEIPVAQMEV------VREGSQSPPIVIIEESPPPPVSLQTE--------HH 218
Query: 237 IPTAVPAAEIRKM----QSGCAERVNVLKRPNGDYSPKVINSSKPNGEVPTERIHPYDLV 292
+P V +E+R+M + G ERV + +RPNGDYSPKVI + +E++ YDLV
Sbjct: 219 VPEEV-QSEMRRMVQGVKMGGGERVRLWRRPNGDYSPKVIRGRFTS---ESEKMTAYDLV 274
Query: 293 EPMMYLFVKIRKARGLVPNEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
EPM YLFV+I KAR L P E+P VKIRT+ H+ +SK A+ R + ++PEW+QVFAL +N
Sbjct: 275 EPMQYLFVRIVKARRLSPTESPCVKIRTAGHFLRSKPATLRPGESWENPEWHQVFALGYN 334
Query: 353 KNDSVSATLEITVWDSPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNR- 411
K+DS SATLEI+VW+ +E FLGGVCFDLSDVPVRDPPDSPLAPQWYRLEG A DQN+
Sbjct: 335 KSDSASATLEISVWNGTSEQFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEG-ADDQNSGI 393
Query: 412 VSGDIQLAVWIGTQADEAFPEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVMEAQDLCIAH 471
VSGDIQL+VWIGTQAD+AFPE+WSSDAPYV HTRSKVYQSPKLWYLRVTVMEAQDL IA
Sbjct: 394 VSGDIQLSVWIGTQADDAFPESWSSDAPYVAHTRSKVYQSPKLWYLRVTVMEAQDLHIAS 453
Query: 472 NLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDR 531
NLPPLTAPE+RVKAQL QS RTRRGSM++HSSSF WHED+ FVA E ED LILLVEDR
Sbjct: 454 NLPPLTAPEVRVKAQLGFQSVRTRRGSMSSHSSSFFWHEDLVFVAGEALEDHLILLVEDR 513
Query: 532 TAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEG 591
TAKDA ++LGH VVPVS+I+QRIDERHVASKWFPL+G C G YCGRI L+LCLEG
Sbjct: 514 TAKDA--LLLGHVVVPVSAIEQRIDERHVASKWFPLDGGCVGG---PYCGRINLRLCLEG 568
Query: 592 GYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAK 651
GYHVLDEAA VCSDFRPTAKQLWKP VG+LELGILGARGLLPMKTK GGKGSTDAYCVAK
Sbjct: 569 GYHVLDEAAQVCSDFRPTAKQLWKPAVGVLELGILGARGLLPMKTKGGGKGSTDAYCVAK 628
Query: 652 YGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFA-DASEERPDYRIGK 710
YGKKWVRTRTITD FDPRWNEQYTWQVYDPCTVLT+GVFDN RMFA D EE+PDYRIGK
Sbjct: 629 YGKKWVRTRTITDSFDPRWNEQYTWQVYDPCTVLTIGVFDNLRMFAPDMPEEKPDYRIGK 688
Query: 711 IRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLPR 770
+RIRVSTLE+NKVYT SYPLLVL RTGLKKMGEIELA+RF CPSMLPET ++YGQPLLPR
Sbjct: 689 VRIRVSTLESNKVYTNSYPLLVLQRTGLKKMGEIELAIRFACPSMLPETCAIYGQPLLPR 748
Query: 771 MHYLRPLGVAQQEALRGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWSMRKSKANWF 830
MHYLRPLGVAQQEALRGAATK+VAAWL RSEPPLGPEVVRYMLDADSH WSMRKSKANWF
Sbjct: 749 MHYLRPLGVAQQEALRGAATKIVAAWLVRSEPPLGPEVVRYMLDADSHTWSMRKSKANWF 808
Query: 831 RIVAVLAWAIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWYPDLIVPTGFLYVVLIGVWY 890
RIVAVLAWA+GLAKWL +IRRWKNP+TTVLVHVLYLVLVWYPDLIVPTGFLY+ LIG+WY
Sbjct: 809 RIVAVLAWAVGLAKWLDDIRRWKNPITTVLVHVLYLVLVWYPDLIVPTGFLYIFLIGLWY 868
Query: 891 YRFRPKIPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVL 950
YRFRPKIP+GMD RLSQAETVDPDELDEEFDTIPSSKPPEIIR RYDRLRMLAARVQTVL
Sbjct: 869 YRFRPKIPAGMDIRLSQAETVDPDELDEEFDTIPSSKPPEIIRARYDRLRMLAARVQTVL 928
Query: 951 GDFATQGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFYYLRHP 1006
GDFATQGERVQALVSWRDPRATKLFIGVC ++T+VLY VPPKMVAVA+GFY+LRHP
Sbjct: 929 GDFATQGERVQALVSWRDPRATKLFIGVCLIVTVVLYAVPPKMVAVAIGFYFLRHP 984
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5882720|gb|AAD55273.1|AC008263_4 Similar to gb|D86180 phosphoribosylanthranilate transferase from Pisum sativum and contains 2 PF|00168 C2 (phospholipid binding) domains. ESTs gb|H76726, gb|T45544 and gb|N96377 come from this gene [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1493 bits (3865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 762/1063 (71%), Positives = 853/1063 (80%), Gaps = 81/1063 (7%)
Query: 2 TTP--SQPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDL 59
TTP S PPP + RKLVVEVV+AR++LPKDGQGSSS YV+ DFD Q+KRTSTKFRDL
Sbjct: 3 TTPFHSDPPPSR--IQRKLVVEVVEARNILPKDGQGSSSAYVVVDFDAQKKRTSTKFRDL 60
Query: 60 NPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDE 119
NP+WNE L+F VSDPKNMD +EL+IEVYNDKR+ NG GRKNHFLGRVK+ GSQF+RRG+E
Sbjct: 61 NPIWNEMLDFAVSDPKNMDYDELDIEVYNDKRFGNGGGRKNHFLGRVKIYGSQFSRRGEE 120
Query: 120 GLVYFPLEKKSVFSWIRGEIGLRIYYYDELSEEEHQ---------------HPPPPQ-DE 163
GLVYFPLEKKSVFSWIRGEIGL+IYYYDE ++E+ HPP + DE
Sbjct: 121 GLVYFPLEKKSVFSWIRGEIGLKIYYYDEAADEDTAGGGGGQQQQQQQQQFHPPQQEADE 180
Query: 164 PPPPQP-----------PQQQPGVCVVEEGRVFEVPGG--HVEVCHPVPEIYHGQPPPQA 210
Q P ++P V VVEEGRVFE + E H QPP
Sbjct: 181 QQHQQQFHPPPQQMMNIPPEKPNVVVVEEGRVFESAQSQRYTET--------HQQPP--V 230
Query: 211 PIIEESQPHGVHVQPEPVQIPPH-DEPIPTAVPAA--------------EIRKMQSG--- 252
I+EES P HV P PH ++ P P+ E+RKMQ G
Sbjct: 231 VIVEESPPQ--HVMQGPNDNHPHRNDNHPQRPPSPPPPPSAGEVHYYPPEVRKMQVGRPP 288
Query: 253 CAERVNVLKRP-NGDYSPKVINSSKPNGEVPTERI--HPYDLVEPMMYLFVKIRKARGLV 309
+R+ V KRP NGDYSP+VINS GE E+ HPY+LVEPM YLFV+I KARGL
Sbjct: 289 GGDRIRVTKRPPNGDYSPRVINSKTGGGETTMEKKTHHPYNLVEPMQYLFVRIVKARGLP 348
Query: 310 PNEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDS--VSATLEITVWD 367
PNE+ YVK+RTS+H+ +SK A R + DSPEWNQVFAL HN++DS ATLEI+ WD
Sbjct: 349 PNESAYVKVRTSNHFVRSKPAVNRPGESVDSPEWNQVFALGHNRSDSAVTGATLEISAWD 408
Query: 368 SPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNN-RVSGDIQLAVWIGTQA 426
+ +E+FLGGVCFDLS+VPVRDPPDSPLAPQWYRLEG +DQN+ R+SGDIQL+VWIGTQ
Sbjct: 409 ASSESFLGGVCFDLSEVPVRDPPDSPLAPQWYRLEGSGADQNSGRISGDIQLSVWIGTQV 468
Query: 427 DEAFPEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQ 486
DEAFPEAWSSDAP+V HTRSKVYQSPKLWYLRVTV+EAQDL IA NLPPLTAPEIRVKAQ
Sbjct: 469 DEAFPEAWSSDAPHVAHTRSKVYQSPKLWYLRVTVLEAQDLHIAPNLPPLTAPEIRVKAQ 528
Query: 487 LALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVV 546
L QSARTRRGSMNNHS SFHWHED+ FVA EP ED L+L+VEDRT K+A +LGHA++
Sbjct: 529 LGFQSARTRRGSMNNHSGSFHWHEDMIFVAGEPLEDCLVLMVEDRTTKEA--TLLGHAMI 586
Query: 547 PVSSIDQRIDERHVASKWFPLEGSCGRGCARS----------YCGRIQLKLCLEGGYHVL 596
PVSSI+QRIDER V SKW LEG G G YCGRI L+LCLEGGYHVL
Sbjct: 587 PVSSIEQRIDERFVPSKWHTLEGEGGGGGGGGGPGGGGGGGPYCGRISLRLCLEGGYHVL 646
Query: 597 DEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW 656
+EAAHVCSDFRPTAKQLWKPP+GILELGILGARGLLPMK KNGGKGSTDAYCVAKYGKKW
Sbjct: 647 EEAAHVCSDFRPTAKQLWKPPIGILELGILGARGLLPMKAKNGGKGSTDAYCVAKYGKKW 706
Query: 657 VRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVS 716
VRTRTITD FDPRW+EQYTWQVYDPCTVLTVGVFDNWRMF+DAS++RPD RIGKIRIRVS
Sbjct: 707 VRTRTITDSFDPRWHEQYTWQVYDPCTVLTVGVFDNWRMFSDASDDRPDTRIGKIRIRVS 766
Query: 717 TLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLPRMHYLRP 776
TLE+NKVYT SYPLLVLL +G+KKMGEIE+AVRF CPS+LP+ + YGQPLLPRMHY+RP
Sbjct: 767 TLESNKVYTNSYPLLVLLPSGMKKMGEIEVAVRFACPSLLPDVCAAYGQPLLPRMHYIRP 826
Query: 777 LGVAQQEALRGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWSMRKSKANWFRIVAVL 836
LGVAQQ+ALRGAATKMVAAWL R+EPPLGPEVVRYMLDADSHAWSMRKSKANW+RIV VL
Sbjct: 827 LGVAQQDALRGAATKMVAAWLARAEPPLGPEVVRYMLDADSHAWSMRKSKANWYRIVGVL 886
Query: 837 AWAIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWYPDLIVPTGFLYVVLIGVWYYRFRPK 896
AWA+GLAKWL NIRRW+NPVTTVLVH+LYLVLVWYPDL+VPT FLYVV+IGVWYYRFRPK
Sbjct: 887 AWAVGLAKWLDNIRRWRNPVTTVLVHILYLVLVWYPDLVVPTAFLYVVMIGVWYYRFRPK 946
Query: 897 IPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQ 956
IP+GMD RLSQAETVDPDELDEEFDTIPSS+ PE+IR RYDRLR+LA RVQT+LGDFA Q
Sbjct: 947 IPAGMDIRLSQAETVDPDELDEEFDTIPSSRRPEVIRARYDRLRILAVRVQTILGDFAAQ 1006
Query: 957 GERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALG 999
GER+QALVSWRDPRATKLFI +C VIT+VLY VP KMVAVALG
Sbjct: 1007 GERIQALVSWRDPRATKLFIAICLVITIVLYAVPAKMVAVALG 1049
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1006 | ||||||
| TAIR|locus:2019070 | 1081 | QKY "AT1G74720" [Arabidopsis t | 0.773 | 0.719 | 0.737 | 0.0 | |
| TAIR|locus:2161523 | 1049 | AT5G17980 [Arabidopsis thalian | 0.795 | 0.762 | 0.484 | 8.4e-243 | |
| TAIR|locus:2096409 | 1017 | AT3G03680 "AT3G03680" [Arabido | 0.948 | 0.938 | 0.456 | 2.7e-219 | |
| TAIR|locus:2162712 | 1036 | AT5G48060 "AT5G48060" [Arabido | 0.707 | 0.687 | 0.495 | 3.3e-206 | |
| TAIR|locus:2139727 | 1011 | AT4G11610 "AT4G11610" [Arabido | 0.947 | 0.942 | 0.423 | 3.7e-206 | |
| TAIR|locus:2009492 | 1029 | AT1G22610 "AT1G22610" [Arabido | 0.691 | 0.676 | 0.472 | 7.2e-202 | |
| TAIR|locus:2020280 | 1012 | AT1G04150 "AT1G04150" [Arabido | 0.698 | 0.694 | 0.473 | 7.4e-200 | |
| TAIR|locus:2095853 | 773 | AT3G57880 "AT3G57880" [Arabido | 0.720 | 0.937 | 0.517 | 3.2e-199 | |
| TAIR|locus:2017627 | 776 | AT1G51570 [Arabidopsis thalian | 0.721 | 0.935 | 0.521 | 1.7e-198 | |
| TAIR|locus:2182305 | 769 | AT5G12970 "AT5G12970" [Arabido | 0.720 | 0.942 | 0.5 | 6e-190 |
| TAIR|locus:2019070 QKY "AT1G74720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3096 (1094.9 bits), Expect = 0., Sum P(3) = 0.
Identities = 590/800 (73%), Positives = 655/800 (81%)
Query: 225 PEPVQIPPHDEP--IPTAVPAAEIRKMQSGCAERVNVLKRP-NGDYSPKVINSSKPNGEV 281
P P P E P V ++ + G +R+ V KRP NGDYSP+VINS GE
Sbjct: 261 PSPPPPPSAGEVHYYPPEVRKMQVGRPPGG--DRIRVTKRPPNGDYSPRVINSKTGGGET 318
Query: 282 PTERI--HPYDLVEPMMYLFVKIRKARGLVPNEAPYVKIRTSSHYKKSKLASYRACDPHD 339
E+ HPY+LVEPM YLFV+I KARGL PNE+ YVK+RTS+H+ +SK A R + D
Sbjct: 319 TMEKKTHHPYNLVEPMQYLFVRIVKARGLPPNESAYVKVRTSNHFVRSKPAVNRPGESVD 378
Query: 340 SPEWNQVFALFHNKNDSV--SATLEITVWDSPTENFLGGVCFXXXXXXXXXXXXXXXAPQ 397
SPEWNQVFAL HN++DS ATLEI+ WD+ +E+FLGGVCF APQ
Sbjct: 379 SPEWNQVFALGHNRSDSAVTGATLEISAWDASSESFLGGVCFDLSEVPVRDPPDSPLAPQ 438
Query: 398 WYRLEGEASDQNN-RVSGDIQLAVWIGTQADEAFPEAWSSDAPYVTHTRSKVYQSPKLWY 456
WYRLEG +DQN+ R+SGDIQL+VWIGTQ DEAFPEAWSSDAP+V HTRSKVYQSPKLWY
Sbjct: 439 WYRLEGSGADQNSGRISGDIQLSVWIGTQVDEAFPEAWSSDAPHVAHTRSKVYQSPKLWY 498
Query: 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVA 516
LRVTV+EAQDL IA NLPPLTAPEIRVKAQL QSARTRRGSMNNHS SFHWHED+ FVA
Sbjct: 499 LRVTVLEAQDLHIAPNLPPLTAPEIRVKAQLGFQSARTRRGSMNNHSGSFHWHEDMIFVA 558
Query: 517 AEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCA 576
EP ED L+L+VEDRT K+A +LGHA++PVSSI+QRIDER V SKW LEG G G
Sbjct: 559 GEPLEDCLVLMVEDRTTKEAT--LLGHAMIPVSSIEQRIDERFVPSKWHTLEGEGGGGGG 616
Query: 577 RS----------YCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGIL 626
YCGRI L+LCLEGGYHVL+EAAHVCSDFRPTAKQLWKPP+GILELGIL
Sbjct: 617 GGGPGGGGGGGPYCGRISLRLCLEGGYHVLEEAAHVCSDFRPTAKQLWKPPIGILELGIL 676
Query: 627 GARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLT 686
GARGLLPMK KNGGKGSTDAYCVAKYGKKWVRTRTITD FDPRW+EQYTWQVYDPCTVLT
Sbjct: 677 GARGLLPMKAKNGGKGSTDAYCVAKYGKKWVRTRTITDSFDPRWHEQYTWQVYDPCTVLT 736
Query: 687 VGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIEL 746
VGVFDNWRMF+DAS++RPD RIGKIRIRVSTLE+NKVYT SYPLLVLL +G+KKMGEIE+
Sbjct: 737 VGVFDNWRMFSDASDDRPDTRIGKIRIRVSTLESNKVYTNSYPLLVLLPSGMKKMGEIEV 796
Query: 747 AVRFVCPSMLPETSSVYGQPLLPRMHYLRPLGVAQQEALRGAATKMVAAWLDRSEPPLGP 806
AVRF CPS+LP+ + YGQPLLPRMHY+RPLGVAQQ+ALRGAATKMVAAWL R+EPPLGP
Sbjct: 797 AVRFACPSLLPDVCAAYGQPLLPRMHYIRPLGVAQQDALRGAATKMVAAWLARAEPPLGP 856
Query: 807 EVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAIGLAKWLHNIRRWKNPXXXXXXXXXXX 866
EVVRYMLDADSHAWSMRKSKANW+RIV VLAWA+GLAKWL NIRRW+NP
Sbjct: 857 EVVRYMLDADSHAWSMRKSKANWYRIVGVLAWAVGLAKWLDNIRRWRNPVTTVLVHILYL 916
Query: 867 XXXWYPDLIVPTGFLYVVLIGVWYYRFRPKIPSGMDTRLSQAETVDPDELDEEFDTIPSS 926
WYPDL+VPT FLYVV+IGVWYYRFRPKIP+GMD RLSQAETVDPDELDEEFDTIPSS
Sbjct: 917 VLVWYPDLVVPTAFLYVVMIGVWYYRFRPKIPAGMDIRLSQAETVDPDELDEEFDTIPSS 976
Query: 927 KPPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCTVITLVL 986
+ PE+IR RYDRLR+LA RVQT+LGDFA QGER+QALVSWRDPRATKLFI +C VIT+VL
Sbjct: 977 RRPEVIRARYDRLRILAVRVQTILGDFAAQGERIQALVSWRDPRATKLFIAICLVITIVL 1036
Query: 987 YVVPPKMVAVALGFYYLRHP 1006
Y VP KMVAVALGFYYLRHP
Sbjct: 1037 YAVPAKMVAVALGFYYLRHP 1056
|
|
| TAIR|locus:2161523 AT5G17980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1947 (690.4 bits), Expect = 8.4e-243, Sum P(2) = 8.4e-243
Identities = 416/859 (48%), Positives = 539/859 (62%)
Query: 180 EEGRVFEVPGGHVEVCHPVPE--IYHGQPPPQAPIIEESQPHGVHVQP--EPVQIPPHDE 235
EE E P E P+ E G+ PP + ES + +P EP Q P E
Sbjct: 193 EESSPAEGPKPDEEASPPLQENATVGGEEPPAS----ESDKNEAEAKPVEEPPQNQPDGE 248
Query: 236 PI-------------PTA-VPAAEIRKMQSGCAERVNVLKRPNGDYSPKVINSSKPNGEV 281
I P + +P I + SG +P + + + +V
Sbjct: 249 DIVLESEDTMSWASAPRSPLPEVIISRSVSGSIPETKNGPQPLRRSVSETASYTSEISDV 308
Query: 282 PTERIHPYDLVEPMMYLFVKIRKARGLVPNEAPYVKIRTSSHYKKSKLASYRACDPHDSP 341
T +DLVE M Y+F+++ KAR L + +P KI S +SK A +C
Sbjct: 309 STIERSTFDLVEKMHYVFIRVVKARSLPTSGSPVTKISLSGTMIQSKPARKTSCF----- 363
Query: 342 EWNQVFALFHNKND-SVSATLEITVWDSPT----ENFLGGVCFXXXXXXXXXXXXXXXAP 396
EW+Q FA + D S S LEI+VWDS T FLGG+CF AP
Sbjct: 364 EWDQTFAFLRDSPDLSSSPILEISVWDSSTGIETSQFLGGICFDVSEIPLRDPPDSPLAP 423
Query: 397 QWYRLEGEASDQNNRVSGDIQLAVWIGTQADEAFPEAWSSDAPYVTHTRSKVYQSPKLWY 456
QWYRLEG + + D+ LA W GTQADE+FP+AW +D R+KVY S KLWY
Sbjct: 424 QWYRLEGGGAHNS-----DLMLATWTGTQADESFPDAWKTDTAGNVTARAKVYMSSKLWY 478
Query: 457 LRVTVMEAQDLCIAHNLPP-LTA---PEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDV 512
LR TV+EAQDL LPP LTA ++KAQL Q +T+ N + S W+ED+
Sbjct: 479 LRATVIEAQDL-----LPPQLTAFKEASFQLKAQLGSQVQKTKSAVTRNGAPS--WNEDL 531
Query: 513 FFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCG 572
FVAAEPF D L+ +E RT+K V +G A VP+S+I++R+D+R VAS+W LE
Sbjct: 532 LFVAAEPFSDQLVFTLEYRTSK--GPVTVGMARVPLSAIERRVDDRLVASRWLGLEDPND 589
Query: 573 RGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLL 632
R R+ ++LC +GGYHV+DEAAHVCSD+RPTA+QLWKP VGI+ELGI+G + LL
Sbjct: 590 E--KRGNRSRVHIRLCFDGGYHVMDEAAHVCSDYRPTARQLWKPAVGIVELGIIGCKNLL 647
Query: 633 PMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDN 692
PMKT NG KGSTDAY VAKYG KWVRTRT++D DP+WNEQYTW+VYDPCTVLT+GVFD+
Sbjct: 648 PMKTVNG-KGSTDAYTVAKYGSKWVRTRTVSDSLDPKWNEQYTWKVYDPCTVLTIGVFDS 706
Query: 693 WRMF-ADASEE--RPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVR 749
W ++ D +E R D RIGK+RIR+STLE K Y +YPLL+L+ G+KK+GEIELAVR
Sbjct: 707 WGVYEVDGGKEATRQDLRIGKVRIRISTLETGKAYRNTYPLLMLVNGGVKKLGEIELAVR 766
Query: 750 FVCPSMLPETSSVYGQPLLPRMHYLRPLGVAQQEALRGAATKMVAAWLDRSEPPLGPEVV 809
FV + + VY QPLLP MH+++PL + Q++ LR A K++AA L RSEPPL PE+V
Sbjct: 767 FVRTAPPLDFLHVYTQPLLPLMHHIKPLSLFQEDMLRNTAVKILAAHLSRSEPPLRPEIV 826
Query: 810 RYMLDADSHAWSMRKSKANWFRIVAVLAWAIGLAKWLHNIRRWKNPXXXXXXXXXXXXXX 869
RYMLDAD+H +SMRK +ANW RIV V+A + + +W+ + R WKNP
Sbjct: 827 RYMLDADTHTFSMRKVRANWLRIVNVVAGMVDVVRWVDDTRFWKNPTSTLLVHALVVMLI 886
Query: 870 WYPDLIVPTGFLYVVLIGVWYYRFRPK--IPSGMDTRLSQAETVDPDELDEEFDTIPSSK 927
W+PDLIVPT Y+ +IG W YRFR + +P D RLS A+ D DELDEEFD +PS++
Sbjct: 887 WFPDLIVPTLAFYLFVIGAWNYRFRSRAALPH-FDPRLSLADAADRDELDEEFDVVPSNR 945
Query: 928 PPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCTVITLVLY 987
PPE++R+RYD+LR + ARVQT+LG+ A QGE++QALV+WRDPRAT +F+G+C + LVLY
Sbjct: 946 PPEMVRLRYDKLRNVGARVQTILGEVAAQGEKMQALVTWRDPRATGIFVGLCFFVALVLY 1005
Query: 988 VVPPKMVAVALGFYYLRHP 1006
+VP KMVA+A GFYY RHP
Sbjct: 1006 LVPTKMVAMASGFYYFRHP 1024
|
|
| TAIR|locus:2096409 AT3G03680 "AT3G03680" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2118 (750.6 bits), Expect = 2.7e-219, P = 2.7e-219
Identities = 468/1025 (45%), Positives = 617/1025 (60%)
Query: 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDP 74
+RKL+VE+ AR+L+PKDGQG++S Y I DFDGQR+RT TKFRDLNP W+E LEF V D
Sbjct: 6 LRKLIVEICSARNLMPKDGQGTASAYAIVDFDGQRRRTKTKFRDLNPQWDEKLEFFVHDV 65
Query: 75 KNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSW 134
M E LEI + NDK+ +G+++ FLG+VK+ GS FA G E LVY+PLEK+SVFS
Sbjct: 66 ATMGEEILEINLCNDKK----TGKRSTFLGKVKIAGSAFASAGSETLVYYPLEKRSVFSQ 121
Query: 135 IRGEIGLRIYYYDELSXXXXXXXXXXXXXXXXXXX-----XXXXXGVCVVEEGRVFEVP- 188
I+GEIGL+ YY DE G E + E
Sbjct: 122 IKGEIGLKAYYVDENPPAAPAATEPKPEAAAATEEKPPEIAKAEDGKKETEAAKTEEKKE 181
Query: 189 GGHVEVCHPVPEIYHGQPPPQAPIIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIRK 248
G E P E + P AP +++ V P P + PIP A +++
Sbjct: 182 GDKKEEEKPKEEAKPDEKKPDAPPDTKAKKPDTAVAPPPPPAEVKNPPIPQK--AETVKQ 239
Query: 249 MQSGCA-ERVNVLKRPNGDYS-PKVINSSKPNGEVPTERIHPYDLVEPMMYLFVKIRKA- 305
+ G E VN D P + G YDLV+ M +L++++ KA
Sbjct: 240 NELGIKPENVNRQDLIGSDLELPSLTRDQNRGGG--------YDLVDRMPFLYIRVAKAK 291
Query: 306 RGLVPNEAP-YVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEIT 364
R P Y K+ ++ K++ + + +W+QVFA K S +LE++
Sbjct: 292 RAKNDGSNPVYAKLVIGTNGVKTRSQTGK--------DWDQVFAF--EKESLNSTSLEVS 341
Query: 365 VWD-----------SPTENFLGGVCFXXXXXXXXXXXXXXXAPQWYRLEGEASDQNNRVS 413
VW + TE+ LG V F APQWY LE E S N
Sbjct: 342 VWSEEKIEKEDKTTTTTESCLGTVSFDLQEVPKRVPPDSPLAPQWYTLESEKSPGN---- 397
Query: 414 GDIQLAVWIGTQADEAFPEAWSSDAP-YVTHTRSKVYQSPKLWYLRVTVMEAQDLCI--- 469
D+ LAVW+GTQADEAF EAW SD+ + TRSKVY SPKLWYLR+TV++ QDL +
Sbjct: 398 -DVMLAVWLGTQADEAFQEAWQSDSGGLIPETRSKVYLSPKLWYLRLTVIQTQDLQLGLG 456
Query: 470 AHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFH-----WHEDVFFVAAEPFEDSL 524
+ + E+ VKAQL Q +T R S+ +SS W+ED+ FVA+EPFE L
Sbjct: 457 SEAKSKIPTTELYVKAQLGPQVFKTARTSIGPSASSSGSGNPTWNEDLVFVASEPFEPFL 516
Query: 525 ILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDER-HVASKWFPLEGSCGRGCARSYCGRI 583
I+ VED T + +G + + S+++R D+R S+WF L G + Y GRI
Sbjct: 517 IVTVEDITNGQS----IGQTKIHMGSVERRNDDRTEPKSRWFNLAGDE----KKPYSGRI 568
Query: 584 QLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGS 643
+K+CLEGGYHVLDEAAHV SD RP+AKQL KPP+G+LE+GI GA LLP+KT++G +G+
Sbjct: 569 HVKVCLEGGYHVLDEAAHVTSDVRPSAKQLAKPPIGLLEVGIRGATNLLPVKTRDGTRGT 628
Query: 644 TDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADAS-EE 702
TDAY VAKYG KW+RTRTI D F+PRWNEQYTW VYDPCTVLT+GVFDN R D S ++
Sbjct: 629 TDAYVVAKYGPKWIRTRTILDRFNPRWNEQYTWDVYDPCTVLTIGVFDNGRYKRDESGKQ 688
Query: 703 RPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSV 762
D R+GKIR+R+STL+ N++Y SY L V+L +G KKMGE+E+AVRF CPS L
Sbjct: 689 GRDVRVGKIRVRLSTLDMNRIYLNSYTLTVILPSGAKKMGEVEIAVRFSCPSWL-SIIQA 747
Query: 763 YGQPLLPRMHYLRPLGVAQQEALRGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWSM 822
Y P+LPRMHY+RPLG AQQ+ LR A ++V A L RSEPPLG EVV+YMLD D+H WSM
Sbjct: 748 YVTPMLPRMHYVRPLGPAQQDILRHTAMRIVTARLARSEPPLGQEVVQYMLDTDNHVWSM 807
Query: 823 RKSKANWFRIVAVLAWAIGLAKWLHNIRRWKNPXXXXXXXXXXXXXXWYPDLIVPTGFLY 882
R+SKANWFR++ L+ A +A+W+H IR W +P P L++PT F+Y
Sbjct: 808 RRSKANWFRVITFLSRAATIARWIHGIRTWVHPPTTVLVHLLLVAIVLCPHLVLPTVFMY 867
Query: 883 VVLIGVWYYRFRPKIP-SGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRM 941
LI +R+R ++ + +D RLS ++V PDELDEEFD P+++ PE++R+RYDRLR
Sbjct: 868 AFLILALRFRYRGRVKVNSVDPRLSCVDSVAPDELDEEFDGFPTTRQPEVVRIRYDRLRA 927
Query: 942 LAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFY 1001
LA R QT+LGD A QGERV+AL +WRDPRAT +F+ C + + Y+VP K+ + GFY
Sbjct: 928 LAGRAQTLLGDVAAQGERVEALFNWRDPRATCIFVVFCLFASFLFYIVPFKVFLLGSGFY 987
Query: 1002 YLRHP 1006
Y+RHP
Sbjct: 988 YIRHP 992
|
|
| TAIR|locus:2162712 AT5G48060 "AT5G48060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1771 (628.5 bits), Expect = 3.3e-206, Sum P(2) = 3.3e-206
Identities = 374/755 (49%), Positives = 491/755 (65%)
Query: 277 PNGEVPTERIHPYDLVEPMMYLFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLAS 331
PN YDLVE M YL+V++ KA+ L P PYV+++ ++ ++K+
Sbjct: 275 PNPNAGERFTGTYDLVEQMFYLYVRVVKAKELPPGSITGGCDPYVEVKLGNYKGRTKIFD 334
Query: 332 YRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSPT---ENFLGGVCFXXXXXXXXX 388
+ PEWNQVFA K S+ LE+ V D T ++ LG V F
Sbjct: 335 RKTT----IPEWNQVFAF--TKERIQSSVLEVFVKDKETLGRDDILGKVVFDLNEIPTRV 388
Query: 389 XXXXXXAPQWYRLEGEASDQNNRVSGDIQLAVWIGTQADEAFPEAWSSDAPYVT-----H 443
APQWYRLE + + V G+I LAVW+GTQADEAFPEAW +D+ V +
Sbjct: 389 PPNSPLAPQWYRLE-DWRGEGKVVRGEIMLAVWMGTQADEAFPEAWHADSASVHGEGVFN 447
Query: 444 TRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHS 503
RSKVY SPKLWYLRV V+EAQD+ I + L P++ VKA + +Q+ +T S+ +
Sbjct: 448 IRSKVYVSPKLWYLRVNVIEAQDM-IPSDRNRL--PDVFVKASVGMQTLKTSICSIKTTN 504
Query: 504 SSFHWHEDVFFVAAEPFEDSLILLVEDR--TAKDAAAVILGHAVVPVSSIDQRIDERHVA 561
W ED+ FV AEPFE+ L++ VEDR T+KD ++G +P++ ++R+D R V
Sbjct: 505 PL--WKEDLVFVVAEPFEEQLVISVEDRVHTSKDE---VIGKITLPMNVFEKRLDHRPVH 559
Query: 562 SKWFPLEGSCGRGC----AR----SYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQL 613
S+WF L+ G G AR + RI L++CLEGGYHV+DE+ SD RPTA+QL
Sbjct: 560 SRWFNLD-KYGTGVLEPDARRKEHKFSSRIHLRICLEGGYHVMDESTMYISDTRPTARQL 618
Query: 614 WKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQ 673
WK PVG+LE+GILGA GL+PMK K+G +GST+AYCVAKYG+KWVRTRTI D PRWNEQ
Sbjct: 619 WKQPVGMLEIGILGANGLVPMKLKDG-RGSTNAYCVAKYGQKWVRTRTILDTLSPRWNEQ 677
Query: 674 YTWQVYDPCTVLTVGVFDNWRMFADAS--EERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731
YTW+VYDPCTV+T+GVFDN + + S + D RIGK+RIR+STLE +K+YT S+PLL
Sbjct: 678 YTWEVYDPCTVITLGVFDNSHLGSAQSGTADSRDARIGKVRIRLSTLEAHKIYTHSFPLL 737
Query: 732 VLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLPRMHYLRPLGVAQQEALRGAATK 791
VL GLKK G+++++VRF S L YG PLLP+MHYL P V Q + LR A
Sbjct: 738 VLQPHGLKKTGDLQISVRFTTLS-LANIIYNYGHPLLPKMHYLFPFTVNQVDGLRYQAMN 796
Query: 792 MVAAWLDRSEPPLGPEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAIGLAKWLHNIRR 851
+V+ L R+EPPL EVV YMLD DSH WSMR+SKAN+FRI+++L+ + KWL ++
Sbjct: 797 IVSTRLGRAEPPLRKEVVEYMLDVDSHLWSMRRSKANFFRIMSLLSGYFLVGKWLEDVCN 856
Query: 852 WKNPXXXXXXXXXXXXXXWYPDLIVPTGFLYVVLIGVWYYRFRPKIPSGMDTRLSQAETV 911
W+ P YP+LI+PT FLY+ IG+W +R RP+ P MD +LS AE V
Sbjct: 857 WRYPVTSVLVNVLFFILVMYPELILPTMFLYMFFIGLWNFRSRPRHPPHMDMKLSWAEAV 916
Query: 912 DPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRA 971
PDELDEEFDT P+S+ E++R+RYDRLR +A R+QTV+GD A QGER+Q+L+SWRDPRA
Sbjct: 917 GPDELDEEFDTFPTSRSQELVRLRYDRLRSVAGRIQTVVGDIAAQGERIQSLLSWRDPRA 976
Query: 972 TKLFIGVCTVITLVLYVVPPKMVAVALGFYYLRHP 1006
T LFI C ++VLY +P K +A+A G YYLRHP
Sbjct: 977 TSLFILFCLAASVVLYAMPFKAIALASGLYYLRHP 1011
|
|
| TAIR|locus:2139727 AT4G11610 "AT4G11610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1994 (707.0 bits), Expect = 3.7e-206, P = 3.7e-206
Identities = 431/1017 (42%), Positives = 599/1017 (58%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
KL V+V+ A +L PKDGQG+S+ YV FDGQ+ RT+ K RDLNPVWNE F +SDP
Sbjct: 7 KLGVDVIGAHNLFPKDGQGTSNAYVELYFDGQKHRTTIKDRDLNPVWNESFFFNISDPSR 66
Query: 77 MDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIR 136
+ LE + Y+ R NG FLG+V L G+ F D +++FP+E++ +FS +R
Sbjct: 67 LHYLNLEAQAYSHNRSTNGRS----FLGKVSLSGTSFVPHSDAVVLHFPMERRGIFSRVR 122
Query: 137 GEIGLRIYYYDELSXXXXXXXXXXXXXXXXXXXXXXXXGVCVVEEGRVFEVPGGHVEVCH 196
GE+GL++Y DE S + + +P E H
Sbjct: 123 GELGLKVYITDEASLKSSAASNDHPDNLDPALPRAMNVEHRSDKRHVFYNLPNSAQEHQH 182
Query: 197 PVPEIYHGQPPPQAPIIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIRKMQSGCAER 256
H Q P Q+ + Q + H + +P H + PA + + +
Sbjct: 183 Q-----HPQGPNQSSSLAAEQDN--HNEHHHHYVPKHQVDEMRSEPARPSKLVHAH---- 231
Query: 257 VNVLKRPNGDYSPKVINSSKPNGEVPTER-IHP-------YDLVEPMMYLFVKIRKARGL 308
++ D++ K + G V R IH YDLVE M +L+V++ KAR L
Sbjct: 232 -SIASAQPADFALKETSPHLGGGRVVGGRVIHKDKTATSTYDLVERMYFLYVRVVKAREL 290
Query: 309 -----VPNEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEI 363
+ P+V++R + YK R + PEWNQVFA K ++ LE+
Sbjct: 291 PIMDITGSVDPFVEVRVGN-YK----GITRHFEKRQHPEWNQVFAFA--KERMQASVLEV 343
Query: 364 TVWDSPT--ENFLGGVCFXXXXXXXXXXXXXXXAPQWYRLEGEASDQNNRVSGDIQLAVW 421
V D ++++G V F APQWYRLE + + ++ G++ LAVW
Sbjct: 344 VVKDKDLLKDDYVGFVRFDINDVPLRVPPDSPLAPQWYRLEDKKGE---KIKGELMLAVW 400
Query: 422 IGTQADEAFPEAWSSDA-------PYVTHT-RSKVYQSPKLWYLRVTVMEAQDLCIAHNL 473
IGTQADEAF +AW SDA P ++ RSKVY +P+LWY+RV V+EAQDL
Sbjct: 401 IGTQADEAFSDAWHSDAAMPVDCSPAISAVLRSKVYHAPRLWYVRVNVIEAQDLIPTDKT 460
Query: 474 PPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTA 533
P++ VKAQL Q +TR + W+ED FV AEPFED L+L VEDR A
Sbjct: 461 ---RFPDVYVKAQLGNQVMKTRPCQARTLGAV--WNEDFLFVVAEPFEDHLVLTVEDRVA 515
Query: 534 KDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEG----SCGRGCARSYCGRIQLKLCL 589
++ G +P++++++R D+ + ++W+ LE + + RI L++CL
Sbjct: 516 PGKDEIV-GRTYIPLNTVEKRADDHMIHARWYNLERPVIVDVDQLKREKFSMRIHLRVCL 574
Query: 590 EGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCV 649
EGGYHVLDE+ H SD RP+A+ LW+ P+G+LELGIL A GL PMKT+ G +G++D +CV
Sbjct: 575 EGGYHVLDESTHYSSDLRPSARPLWRQPIGVLELGILNAVGLHPMKTREG-RGTSDTFCV 633
Query: 650 AKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIG 709
KYG+KWVRTRT+ D P++NEQYTW+V+DP TVLTVGVFDN ++ + D +IG
Sbjct: 634 GKYGQKWVRTRTMVDNLCPKYNEQYTWEVFDPATVLTVGVFDNGQL---GEKGNRDVKIG 690
Query: 710 KIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLP 769
KIRIR+STLE ++YT SYPLLVL TG+KKMGE+ +AVRF C S Y +PLLP
Sbjct: 691 KIRIRLSTLETGRIYTHSYPLLVLHPTGVKKMGELHMAVRFTCISFANMLYQ-YSKPLLP 749
Query: 770 RMHYLRPLGVAQQEALRGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWSMRKSKANW 829
+MHY+RP V QQ+ LR A +VAA L R+EPPL E++ +M D DSH WSMRKSKAN+
Sbjct: 750 KMHYVRPFSVMQQDMLRHQAVNIVAARLGRAEPPLRKEIIEFMSDTDSHLWSMRKSKANF 809
Query: 830 FRIVAVLAWAIGLAKWLHNIRRWKNPXXXXXXXXXXXXXXWYPDLIVPTGFLYVVLIGVW 889
FR++ V + I + KW +I W+NP P+LI+PT FLY+ LIG+W
Sbjct: 810 FRMMTVFSGVIAVGKWFSDICSWRNPITTVLVHVLFLMLVCLPELILPTMFLYMFLIGLW 869
Query: 890 YYRFRPKIPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTV 949
YRFRP+ P M+T++SQAE V PDELDEEFDT P+++ P+++R+RYDRLR +A R+QTV
Sbjct: 870 NYRFRPRYPPHMNTKISQAEAVHPDELDEEFDTFPTTRNPDMVRLRYDRLRSVAGRIQTV 929
Query: 950 LGDFATQGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFYYLRHP 1006
+GD ATQGER QAL+SWRDPRAT +F+ +C + +V ++ P ++V GF+ +RHP
Sbjct: 930 IGDLATQGERFQALLSWRDPRATAIFVILCFIAAIVFFITPIQIVVALAGFFTMRHP 986
|
|
| TAIR|locus:2009492 AT1G22610 "AT1G22610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1649 (585.5 bits), Expect = 7.2e-202, Sum P(2) = 7.2e-202
Identities = 350/740 (47%), Positives = 466/740 (62%)
Query: 289 YDLVEPMMYLFVKIRKARGLVPNEAPYVKIRTS-SHYKKSKLASYRACDPH----DSPEW 343
YDLVE M YL+V + KAR L P + + S Y + KL +Y+ H +P W
Sbjct: 287 YDLVEQMHYLYVSVVKARDL-----PVMDVSGSLDPYVEVKLGNYKGLTKHLEKNSNPIW 341
Query: 344 NQVFALFHNKNDSVSATLEITVWDSPT---ENFLGGVCFXXXXXXXXXXXXXXXAPQWYR 400
Q+FA +K S LE+TV D ++F+G V APQWYR
Sbjct: 342 KQIFAF--SKERLQSNLLEVTVKDKDLLTKDDFVGRVHIDLTEVPLRVPPDSPLAPQWYR 399
Query: 401 LEGEASDQNNRVSGDIQLAVWIGTQADEAFPEAWSSDAPYVTH-----TRSKVYQSPKLW 455
LE + + NR G+I LAVW+GTQADE+FP+AW SDA V+H TRSKVY SPKL+
Sbjct: 400 LEDKKGMKTNR--GEIMLAVWMGTQADESFPDAWHSDAHRVSHSNLSNTRSKVYFSPKLY 457
Query: 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFV 515
YLR+ VMEAQDL + P+ VK Q Q TR M + WHE++ FV
Sbjct: 458 YLRIHVMEAQDLVPSDKG---RVPDAIVKIQAGNQMRATRTPQMRTMNPQ--WHEELMFV 512
Query: 516 AAEPFEDSLILLVEDRTA--KDAAAVILGHAVVPVSSIDQRIDERHVAS-KWFPLEGSC- 571
+EPFED +I+ V+DR KD ILG +PV + R + + +WF L+
Sbjct: 513 VSEPFEDMVIVSVDDRIGPGKDE---ILGRVFIPVRDVPVRQEVGKMPDPRWFNLQRHSM 569
Query: 572 -----GRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGIL 626
+ +I L++C+E GYHVLDE+ H SD +P++K L KP +GILELGIL
Sbjct: 570 SMEEENEKRKEKFSSKILLRVCIEAGYHVLDESTHFSSDLQPSSKHLRKPSIGILELGIL 629
Query: 627 GARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLT 686
AR L+PMK K+G TD YCVAKYG KWVRTRT+ D P+WNEQYTW+V+DPCTV+T
Sbjct: 630 SARNLMPMKGKDGRM--TDPYCVAKYGNKWVRTRTLLDALAPKWNEQYTWEVHDPCTVIT 687
Query: 687 VGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIEL 746
+GVFDN + D + + D RIGK+R+R+STLE ++VYT YPLLVL GLKK GE++L
Sbjct: 688 IGVFDNSHV-NDGGDFK-DQRIGKVRVRLSTLETDRVYTHFYPLLVLTPGGLKKNGELQL 745
Query: 747 AVRFVCPSMLPETSSVYGQPLLPRMHYLRPLGVAQQEALRGAATKMVAAWLDRSEPPLGP 806
A+R+ C + + YG+PLLP+MHY++P+ V + LR A ++VA L RSEPPL
Sbjct: 746 ALRYTCTGFV-NMMAQYGRPLLPKMHYIQPIPVRHIDLLRHQAMQIVATRLSRSEPPLRR 804
Query: 807 EVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAIGLAKWLHNIRRWKNPXXXXXXXXXXX 866
EVV YMLD D H +S+R+SKAN+ RI+++L+ + KW ++I W+NP
Sbjct: 805 EVVEYMLDVDYHMFSLRRSKANFSRIMSLLSSVTLVCKWFNDICTWRNPITTCLVHVLFL 864
Query: 867 XXXWYPDLIVPTGFLYVVLIGVWYYRFRPKIPSGMDTRLSQAETVDPDELDEEFDTIPSS 926
YP+LI+PT FLY+ +IG+W YR+RP+ P MD R+SQA+ PDELDEEFDT P+S
Sbjct: 865 ILVCYPELILPTVFLYLFVIGMWNYRYRPRHPPHMDARVSQADNAHPDELDEEFDTFPTS 924
Query: 927 KPPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCTVITLVL 986
+P +I+RMRYDRLR + RVQTV+GD ATQGER+QAL+SWRDPRAT LFI + + +
Sbjct: 925 RPADIVRMRYDRLRSVGGRVQTVVGDLATQGERIQALLSWRDPRATALFIVFALIWAVFI 984
Query: 987 YVVPPKMVAVALGFYYLRHP 1006
YV P +++A+ +G + LRHP
Sbjct: 985 YVTPFQVIAIIIGLFMLRHP 1004
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| TAIR|locus:2020280 AT1G04150 "AT1G04150" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1655 (587.6 bits), Expect = 7.4e-200, Sum P(2) = 7.4e-200
Identities = 346/731 (47%), Positives = 456/731 (62%)
Query: 289 YDLVEPMMYLFVKIRKARGLVPNEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFA 348
YDLVE M YL+V I KA+ L +++ ++ +K S + +PEWNQVF
Sbjct: 272 YDLVEQMQYLYVNIVKAKDLSVLGEVVSEVKLGNYRGVTKKVSSNS----SNPEWNQVFV 327
Query: 349 LFHNKNDSVSATLEITVWDSPTENFLGGVCFXXXXXXXXXXXXXXXAPQWYRLEGEASDQ 408
+K S+ +E+ V + + + G V F APQWY++E +
Sbjct: 328 F--SKERIQSSVVELFVKEGNKDEYTGRVLFDLSEIPTRVPPDSPLAPQWYKIENRNGGR 385
Query: 409 NNRVSGDIQLAVWIGTQADEAFPEAWSSDAPYV-----THTRSKVYQSPKLWYLRVTVME 463
N G++ ++VW GTQADEAF EAW S A V + +SKVY SPKLWYLR++V+E
Sbjct: 386 GN---GELMVSVWFGTQADEAFAEAWHSKAGNVHIEELSSIKSKVYLSPKLWYLRISVIE 442
Query: 464 AQDLCIAHNLPPLTA-PEIRVKAQLALQSARTRRGSM--NNHSSSFHWHEDVFFVAAEPF 520
AQD+ I L PE+ K Q+ Q RT S S+ +W+ED+ FV AEPF
Sbjct: 443 AQDVAIMDKGSSLMRFPELSAKLQVGSQILRTAIASAIPTKSFSNPYWNEDLMFVVAEPF 502
Query: 521 EDSLILLVEDRTAKDAAA----VILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCA 576
ED + ++VEDR A V +G +P+S++++R + V S+WF L+ G
Sbjct: 503 EDCVTVVVEDRLNGGAIGGQNDVAVGRVQIPISAVERRTGDTLVGSRWFSLDN--GNNNN 560
Query: 577 RSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKT 636
R + RI L+L L+GGYHVLDEA SD RPTAK+LWKP VG+LE+GIL A GL+PMK
Sbjct: 561 R-FGSRIHLRLSLDGGYHVLDEATMYNSDVRPTAKELWKPQVGLLEIGILSATGLMPMKV 619
Query: 637 KNGGKGS-TDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRM 695
++G G D+YCVAKYG KWVRTRT+ D P+WNEQYTW+VYDPCTV+TVGVFDN R+
Sbjct: 620 RDGKCGGIADSYCVAKYGPKWVRTRTVVDSLCPKWNEQYTWEVYDPCTVVTVGVFDNARV 679
Query: 696 FADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSM 755
+ + D RIGK+RIR+STLE +VYT SYPL+VL +G+KK GE+ LAVR C +
Sbjct: 680 --NENNNSRDVRIGKVRIRLSTLETGRVYTHSYPLIVLHPSGVKKTGELHLAVRLSCGNA 737
Query: 756 LPETSSVYGQPLLPRMHYLRPLGVAQQEALRGAATKMVAAWLDRSEPPLGPEVVRYMLDA 815
+ +Y PLLP+MHY +PLGV E LR VAA L R+EPPLG EVV YMLD
Sbjct: 738 V-NMLHMYALPLLPKMHYTQPLGVHMLERLRYQTLNAVAARLSRAEPPLGREVVEYMLDH 796
Query: 816 DSHAWSMRKSKANWFRIVAVLAWAIGLAKWLHNIRRWKNPXXXXXXXXXXXXXXWYPDLI 875
D H WSMR+SKAN+FR+V V++ + +AK + +R W P +P+L+
Sbjct: 797 DFHVWSMRRSKANFFRLVNVISGLVAVAKLVEVMRSWSKPVYSTVFVLAFLFMVLFPELL 856
Query: 876 VPTGFLYVVLIGVWYYRFRPKIPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMR 935
+P LY +GVW +R R + P MD R+S AETV PDELDEEFDT P+S+ +++RMR
Sbjct: 857 LPCLLLYTAAVGVWRFRRRSRYPPHMDARISHAETVFPDELDEEFDTFPTSRGFDVVRMR 916
Query: 936 YDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVA 995
YDR+R +A RVQTV+GD A+QGERVQAL+SWRDPRAT LF+ C + + Y VP K+
Sbjct: 917 YDRVRSIAGRVQTVVGDMASQGERVQALLSWRDPRATFLFLMFCLLAAVGFYTVPVKLTV 976
Query: 996 VALGFYYLRHP 1006
G YYLR P
Sbjct: 977 AISGLYYLRPP 987
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| TAIR|locus:2095853 AT3G57880 "AT3G57880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1910 (677.4 bits), Expect = 3.2e-199, Sum P(2) = 3.2e-199
Identities = 395/763 (51%), Positives = 502/763 (65%)
Query: 263 PNGDYSPKVINSSKPNGEVPTERI-HPYDLVEPMMYLFVKIRKARGLVPNEA-----PYV 316
P D+S K G++ +++ YDLVE M YL+V++ KA+ L + PYV
Sbjct: 5 PPEDFSLKETRPHLGGGKLSGDKLTSTYDLVEQMQYLYVRVVKAKELPGKDMTGSCDPYV 64
Query: 317 KIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSAT-LEITVWDSP--TENF 373
+++ + YK + R + +PEWNQVFA D + A+ LE TV D ++
Sbjct: 65 EVKLGN-YK----GTTRHFEKKSNPEWNQVFAF---SKDRIQASFLEATVKDKDFVKDDL 116
Query: 374 LGGVCFXXXXXXXXXXXXXXXAPQWYRLEGEASDQNNRVSGDIQLAVWIGTQADEAFPEA 433
+G V F APQWYRLE D +V G++ LAVW GTQADEAFPEA
Sbjct: 117 IGRVVFDLNEVPKRVPPDSPLAPQWYRLEDRKGD---KVKGELMLAVWFGTQADEAFPEA 173
Query: 434 WSSDAPYVTHT------RSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL 487
W SDA V+ T RSKVY SPKLWYLRV V+EAQDL PE+ VKA +
Sbjct: 174 WHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPTDKQ---RYPEVYVKAIV 230
Query: 488 ALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVP 547
Q+ RTR + W+ED+ FVAAEPFE+ LIL VEDR A + V LG +P
Sbjct: 231 GNQALRTRVSQSRTINPM--WNEDLMFVAAEPFEEPLILSVEDRVAPNKDEV-LGRCAIP 287
Query: 548 VSSIDQRIDERHVASKWFPLEGSC---GRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCS 604
+ +D+R D + V S+W+ LE G + RI +++CLEGGYHVLDE+ H S
Sbjct: 288 LQYLDRRFDHKPVNSRWYNLEKHIMVDGEKKETKFASRIHMRICLEGGYHVLDESTHYSS 347
Query: 605 DFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITD 664
D RPTAKQLWKP +G+LELGIL A GL+PMKTK+G +G+TDAYCVAKYG+KW+RTRTI D
Sbjct: 348 DLRPTAKQLWKPNIGVLELGILNATGLMPMKTKDG-RGTTDAYCVAKYGQKWIRTRTIID 406
Query: 665 CFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFA-DASEERPDYRIGKIRIRVSTLENNKV 723
F PRWNEQYTW+V+DPCTV+TVGVFDN + + D RIGK+RIR+STLE ++V
Sbjct: 407 SFTPRWNEQYTWEVFDPCTVVTVGVFDNCHLHGGEKIGGAKDSRIGKVRIRLSTLETDRV 466
Query: 724 YTTSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLPRMHYLRPLGVAQQE 783
YT SYPLLVL G+KKMGEI LAVRF C S+L +Y QPLLP+MHY+ PL V+Q +
Sbjct: 467 YTHSYPLLVLHPNGVKKMGEIHLAVRFTCSSLL-NMMYMYSQPLLPKMHYIHPLTVSQLD 525
Query: 784 ALRGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAIGLA 843
LR AT++V+ L R+EPPL EVV YMLD SH WSMR+SKAN+FRI+ VL+ I +
Sbjct: 526 NLRHQATQIVSMRLTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVG 585
Query: 844 KWLHNIRRWKNPXXXXXXXXXXXXXXWYPDLIVPTGFLYVVLIGVWYYRFRPKIPSGMDT 903
KW I WKNP YP+LI+PT FLY+ LIG+WYYR+RP+ P MDT
Sbjct: 586 KWFEQICNWKNPITTVLIHLLFIILVLYPELILPTIFLYLFLIGIWYYRWRPRHPPHMDT 645
Query: 904 RLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQAL 963
RLS A++ PDELDEEFDT P+S+P +I+RMRYDRLR +A R+QTV+GD ATQGER+Q+L
Sbjct: 646 RLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSL 705
Query: 964 VSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFYYLRHP 1006
+SWRDPRAT LF+ C + ++LYV P ++VA+ +G Y LRHP
Sbjct: 706 LSWRDPRATALFVLFCLIAAVILYVTPFQVVALCIGIYALRHP 748
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| TAIR|locus:2017627 AT1G51570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1903 (674.9 bits), Expect = 1.7e-198, Sum P(2) = 1.7e-198
Identities = 399/765 (52%), Positives = 498/765 (65%)
Query: 263 PNGDYSPKVINSSKPNGEVPTERIHP-YDLVEPMMYLFVKIRKARGLVPNEAPYVKIRTS 321
P D+S K G+V +++ YDLVE M YL+V++ KA+ E P + S
Sbjct: 5 PPEDFSLKETKPHLGGGKVTGDKLTTTYDLVEQMQYLYVRVVKAK-----ELPGKDLTGS 59
Query: 322 SH-YKKSKLASYRACDPH----DSPEWNQVFALFHNKNDSVSAT-LEITVWDSPT--ENF 373
Y + KL +YR H +PEWNQVFA D V A+ LE TV D ++
Sbjct: 60 CDPYVEVKLGNYRGTTRHFEKKSNPEWNQVFAF---SKDRVQASYLEATVKDKDLVKDDL 116
Query: 374 LGGVCFXXXXXXXXXXXXXXXAPQWYRLEGEASDQNNRVSGDIQLAVWIGTQADEAFPEA 433
+G V F APQWYRLE + +V G++ LAVW GTQADEAFPEA
Sbjct: 117 IGRVVFDLNEIPKRVPPDSPLAPQWYRLE---DGKGQKVKGELMLAVWFGTQADEAFPEA 173
Query: 434 WSSDAPYVTHT------RSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL 487
W SDA V+ T RSKVY SPKLWYLRV V+EAQDL + PE+ VK +
Sbjct: 174 WHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLIPSDKG---RYPEVFVKVIM 230
Query: 488 ALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVP 547
Q+ RTR + S + W+ED+ FV AEPFE+ LIL VEDR A + V LG VP
Sbjct: 231 GNQALRTRVSQ--SRSINPMWNEDLMFVVAEPFEEPLILSVEDRVAPNKDEV-LGRCAVP 287
Query: 548 VSSIDQRIDERHVASKWFPLEGSC----GRGCARSYCGRIQLKLCLEGGYHVLDEAAHVC 603
+ +D+R D R V S+WF LE G + +I +++CLEGGYHVLDE+ H
Sbjct: 288 LQYLDKRFDYRPVNSRWFNLEKHVIMEGGEKKEIKFASKIHMRICLEGGYHVLDESTHYS 347
Query: 604 SDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTIT 663
SD RPTAKQLWKP +G+LELG+L A GL+PMK K GG+G+TDAYCVAKYG+KW+RTRTI
Sbjct: 348 SDLRPTAKQLWKPNIGVLELGVLNATGLMPMKAKEGGRGTTDAYCVAKYGQKWIRTRTII 407
Query: 664 DCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEER--PDYRIGKIRIRVSTLENN 721
D F PRWNEQYTW+V+DPCTV+TVGVFDN + D RIGK+RIR+STLE +
Sbjct: 408 DSFTPRWNEQYTWEVFDPCTVVTVGVFDNCHLHGGDKNNGGGKDSRIGKVRIRLSTLEAD 467
Query: 722 KVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLPRMHYLRPLGVAQ 781
+VYT SYPLLVL +G+KKMGEI LAVRF C S+L +Y PLLP+MHYL PL V+Q
Sbjct: 468 RVYTHSYPLLVLHPSGVKKMGEIHLAVRFTCSSLL-NMMYMYSMPLLPKMHYLHPLTVSQ 526
Query: 782 QEALRGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAIG 841
+ LR AT++V+ L R+EPPL EVV YMLD SH WSMR+SKAN+FRI+ VL+ I
Sbjct: 527 LDNLRHQATQIVSTRLTRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSGIIA 586
Query: 842 LAKWLHNIRRWKNPXXXXXXXXXXXXXXWYPDLIVPTGFLYVVLIGVWYYRFRPKIPSGM 901
+ KW I WKNP YP+LI+PT FLY+ LIGVWYYR+RP+ P M
Sbjct: 587 VGKWFEQICVWKNPITTVLIHILFIILVIYPELILPTIFLYLFLIGVWYYRWRPRHPPHM 646
Query: 902 DTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQ 961
DTRLS A++ PDELDEEFDT P+S+P +I+RMRYDRLR +A R+QTV+GD ATQGER Q
Sbjct: 647 DTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERFQ 706
Query: 962 ALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFYYLRHP 1006
+L+SWRDPRAT LF+ C + ++LY+ P ++VA A+G Y LRHP
Sbjct: 707 SLLSWRDPRATALFVLFCLIAAVILYITPFQVVAFAIGLYVLRHP 751
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| TAIR|locus:2182305 AT5G12970 "AT5G12970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1841 (653.1 bits), Expect = 6.0e-190, P = 6.0e-190
Identities = 383/766 (50%), Positives = 501/766 (65%)
Query: 260 LKRP--NGDYSPKVINSSKPNGEVPTERI-HPYDLVEPMMYLFVKIRKARGLVPNEAPYV 316
+++P N D++ K + G V +++ YDLVE M YL+V++ KA+ E P
Sbjct: 1 MQKPGQNIDFALKETSPKIGAGSVTGDKLCSTYDLVEQMHYLYVRVVKAK-----ELPGK 55
Query: 317 KIRTSSH-YKKSKLASYRACDPH----DSPEWNQVFALFHNKNDSVSATLEITVWDSPT- 370
+ S Y + KL +YR H +PEW QVFA +K ++ LE+ V D
Sbjct: 56 DVTGSCDPYVEVKLGNYRGMTKHFEKRSNPEWKQVFAF--SKERIQASILEVVVKDKDVV 113
Query: 371 -ENFLGGVCFXXXXXXXXXXXXXXXAPQWYRLEGEASDQNNR-VSGDIQLAVWIGTQADE 428
++ +G + F APQWYRLE D++ R V G++ LAVW+GTQADE
Sbjct: 114 LDDLIGRIMFDLNEIPKRVPPDSPLAPQWYRLE----DRHGRKVKGELMLAVWMGTQADE 169
Query: 429 AFPEAWSSDA----PY-VTHTRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRV 483
AF +AW SDA P VTH RSKVY SPKLWY+RV V+EAQDL I H+ PE+ V
Sbjct: 170 AFSDAWHSDAATVGPEGVTHIRSKVYLSPKLWYVRVNVIEAQDL-IPHDKTKF--PEVYV 226
Query: 484 KAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGH 543
KA L Q+ RTR + W+ED+ FV AEPFE++LIL VEDR A + LG
Sbjct: 227 KAMLGNQTLRTRISQTKTLNPM--WNEDLMFVVAEPFEEALILAVEDRVAPNKDET-LGR 283
Query: 544 AVVPVSSIDQRIDERHVASKWFPLEGSC---GRGCARSYCGRIQLKLCLEGGYHVLDEAA 600
+P+ ++ +R+D R + S+WF LE G + RI L++ LEGGYHVLDE+
Sbjct: 284 CAIPLQNVQRRLDHRPLNSRWFNLEKHIMVEGEQKEIKFASRIHLRIFLEGGYHVLDEST 343
Query: 601 HVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTR 660
H SD RPTAKQLWKP +G+LE+GI+ A GL+PMK+K+G KG+TDAYCVAKYG+KW+RTR
Sbjct: 344 HYSSDLRPTAKQLWKPSIGLLEVGIISAHGLMPMKSKDG-KGTTDAYCVAKYGQKWIRTR 402
Query: 661 TITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLEN 720
TI D F P+WNEQYTW+V+D CTV+T G FDN + + + D RIGK+RIR+STLE
Sbjct: 403 TIVDSFTPKWNEQYTWEVFDTCTVITFGAFDNGHIPGGSGK---DLRIGKVRIRLSTLEA 459
Query: 721 NKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLPRMHYLRPLGVA 780
+++YT SYPLLV +G+KK GEI+LAVRF C S++ +Y QPLLP+MHY+ PL V
Sbjct: 460 DRIYTHSYPLLVFHPSGIKKTGEIQLAVRFTCLSLI-NMLHMYSQPLLPKMHYIHPLSVL 518
Query: 781 QQEALRGAATKMVAAWLDRSEPPLGPEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAI 840
Q ++LR A +V+A L+R+EPPL E+V YMLD DSH WSMR+SKAN+FRI+ VL+ I
Sbjct: 519 QLDSLRHQAMNIVSARLNRAEPPLRKEIVEYMLDVDSHMWSMRRSKANFFRIMNVLSGLI 578
Query: 841 GLAKWLHNIRRWKNPXXXXXXXXXXXXXXWYPDLIVPTGFLYVVLIGVWYYRFRPKIPSG 900
+ KW I W+NP YP+LI+PT FLY+ LIG+W +R+RP+ P
Sbjct: 579 AVGKWFDQICNWRNPITTILIHVLFIILVLYPELILPTVFLYLFLIGIWNFRWRPRHPPH 638
Query: 901 MDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQGERV 960
MDTRLS A+ V PDELDEEFDT P+S+ EI+RMRYDRLR + RVQTV+GD ATQGER
Sbjct: 639 MDTRLSHADAVHPDELDEEFDTFPTSRSSEIVRMRYDRLRSIGGRVQTVIGDLATQGERF 698
Query: 961 QALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFYYLRHP 1006
+L+SWRDPRAT LF+ C + +VLYV P ++VA+ G Y LRHP
Sbjct: 699 LSLLSWRDPRATTLFVLFCLIAAIVLYVTPFQVVALLAGIYVLRHP 744
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh2_kg.2__1739__AT1G74720.1 | annotation not avaliable (1078 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1006 | |||
| pfam08372 | 156 | pfam08372, PRT_C, Plant phosphoribosyltransferase | 9e-74 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-64 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 5e-60 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 1e-57 | |
| cd08378 | 121 | cd08378, C2B_MCTP_PRT_plant, C2 domain second repe | 8e-46 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 2e-21 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 1e-20 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-17 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 2e-13 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 4e-13 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 3e-12 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 3e-12 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 6e-12 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 4e-11 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 8e-11 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 3e-10 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 3e-10 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 1e-09 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 1e-09 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 3e-09 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 4e-09 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 7e-09 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 3e-08 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 3e-08 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 3e-08 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 4e-08 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 5e-08 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 7e-08 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 9e-08 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 1e-07 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 1e-07 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 1e-07 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 1e-07 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 2e-07 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-07 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 2e-07 | |
| cd08681 | 118 | cd08681, C2_fungal_Inn1p-like, C2 domain found in | 2e-07 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 4e-07 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 4e-07 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 8e-07 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 8e-07 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 9e-07 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 1e-06 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 2e-06 | |
| cd04018 | 151 | cd04018, C2C_Ferlin, C2 domain third repeat in Fer | 2e-06 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 2e-06 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 3e-06 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 3e-06 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 4e-06 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 5e-06 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 5e-06 | |
| cd08373 | 127 | cd08373, C2A_Ferlin, C2 domain first repeat in Fer | 6e-06 | |
| cd08393 | 125 | cd08393, C2A_SLP-1_2, C2 domain first repeat prese | 9e-06 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 1e-05 | |
| cd04045 | 120 | cd04045, C2C_Tricalbin-like, C2 domain third repea | 1e-05 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-05 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 2e-05 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 3e-05 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 3e-05 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 3e-05 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 3e-05 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 5e-05 | |
| cd08678 | 126 | cd08678, C2_C21orf25-like, C2 domain found in the | 5e-05 | |
| cd08379 | 126 | cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe | 6e-05 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 6e-05 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 7e-05 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 8e-05 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 9e-05 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 1e-04 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 1e-04 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 1e-04 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 1e-04 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 1e-04 | |
| cd04019 | 150 | cd04019, C2C_MCTP_PRT_plant, C2 domain third repea | 2e-04 | |
| cd04052 | 111 | cd04052, C2B_Tricalbin-like, C2 domain second repe | 2e-04 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 2e-04 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 2e-04 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 3e-04 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 7e-04 | |
| cd08406 | 136 | cd08406, C2B_Synaptotagmin-12, C2 domain second re | 9e-04 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 0.001 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 0.001 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 0.001 | |
| cd08395 | 120 | cd08395, C2C_Munc13, C2 domain third repeat in Mun | 0.001 | |
| cd04029 | 125 | cd04029, C2A_SLP-4_5, C2 domain first repeat prese | 0.001 | |
| cd08682 | 126 | cd08682, C2_Rab11-FIP_classI, C2 domain found in R | 0.002 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 0.002 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 0.002 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 0.002 | |
| cd08383 | 117 | cd08383, C2A_RasGAP, C2 domain (first repeat) of R | 0.002 | |
| PRK03427 | 333 | PRK03427, PRK03427, cell division protein ZipA; Pr | 0.003 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 0.003 | |
| cd08409 | 137 | cd08409, C2B_Synaptotagmin-15, C2 domain second re | 0.003 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 0.004 | |
| cd04014 | 132 | cd04014, C2_PKC_epsilon, C2 domain in Protein Kina | 0.004 | |
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 0.004 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 0.004 |
| >gnl|CDD|192017 pfam08372, PRT_C, Plant phosphoribosyltransferase C-terminal | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 9e-74
Identities = 88/131 (67%), Positives = 108/131 (82%)
Query: 876 VPTGFLYVVLIGVWYYRFRPKIPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMR 935
+PT FLY+ +IG+W YRFRP+ P MDTRLS A+ PDELDEEFDT P+S+PP+++RMR
Sbjct: 1 LPTIFLYLFVIGLWNYRFRPRHPPHMDTRLSHADAAHPDELDEEFDTFPTSRPPDVVRMR 60
Query: 936 YDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVA 995
YDRLR +A RVQTV+GD ATQGER+QAL+SWRDPRAT +F+ C V +VLYVVP K+VA
Sbjct: 61 YDRLRSVAGRVQTVVGDIATQGERLQALLSWRDPRATAIFVLFCLVAAVVLYVVPFKVVA 120
Query: 996 VALGFYYLRHP 1006
+ GFYYLRHP
Sbjct: 121 LLAGFYYLRHP 131
|
This domain is found at the C-terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (pfam00168). Length = 156 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 2e-64
Identities = 77/131 (58%), Positives = 96/131 (73%), Gaps = 4/131 (3%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
KLVVEVVDA+DL+PKDGQGSSS YV DFDGQ+KRT TK +DLNPVWNE L F VSDP
Sbjct: 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSR 60
Query: 77 MDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIR 136
+ LE+ VYND+R SGR+ FLGRV++ G+ F + + +PLEK+ +FS +R
Sbjct: 61 LSNLVLEVYVYNDRR----SGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVR 116
Query: 137 GEIGLRIYYYD 147
GEIGL++Y D
Sbjct: 117 GEIGLKVYITD 127
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 5e-60
Identities = 84/128 (65%), Positives = 101/128 (78%), Gaps = 2/128 (1%)
Query: 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVY 679
ILE+GILGA+GL ++ K G+GSTDAYCVAKYG KWVRTRT+ D +PRWNEQYTW VY
Sbjct: 1 ILEVGILGAQGLDVLRAK-DGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVY 59
Query: 680 DPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLK 739
DPCTVLTVGVFDN + +PD IGK+RIR+STLE+++VY SYPLL L +G+K
Sbjct: 60 DPCTVLTVGVFDNSQSHWK-EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVK 118
Query: 740 KMGEIELA 747
KMGE+E A
Sbjct: 119 KMGELECA 126
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 1e-57
Identities = 76/156 (48%), Positives = 97/156 (62%), Gaps = 9/156 (5%)
Query: 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFV 515
YLRVTV+EAQDL + PE+ VKAQL Q RTR + + W+E++ FV
Sbjct: 1 YLRVTVIEAQDLVPSDKNR---VPEVFVKAQLGNQVLRTRPSQT--RNGNPSWNEELMFV 55
Query: 516 AAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGC 575
AAEPFED LIL VEDR + LG AV+P++ I++R+D+R V S+WF LE G
Sbjct: 56 AAEPFEDHLILSVEDRVGPNKD-EPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAME 114
Query: 576 A---RSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRP 608
R + RI L+LCL+GGYHVLDE+ H SD RP
Sbjct: 115 QKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 8e-46
Identities = 65/130 (50%), Positives = 83/130 (63%), Gaps = 11/130 (8%)
Query: 297 YLFVKIRKARGLVPNEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDS 356
YL+V++ KARGL N V +YK S +A + +PEWNQVFA +K+
Sbjct: 1 YLYVRVVKARGLPANSNDPVVEVKLGNYKGST----KAIERTSNPEWNQVFAF--SKDRL 54
Query: 357 VSATLEITVWD--SPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNRVSG 414
+TLE++VWD ++FLGGVCFDLS+VP R PPDSPLAPQWYRLE + RV G
Sbjct: 55 QGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK---GGRVGG 111
Query: 415 DIQLAVWIGT 424
++ LAVW GT
Sbjct: 112 ELMLAVWFGT 121
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-21
Identities = 38/93 (40%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQR---KRTSTKFRDLNPVWNEPLEFIVSDP 74
L V V+ A++L PKD G S PYV GQ+ K+T LNPVWNE F V+ P
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60
Query: 75 KNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVK 107
+ EL IEVY+ R+ K+ F+G V
Sbjct: 61 ---ELAELRIEVYDYDRF-----GKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 1e-20
Identities = 43/110 (39%), Positives = 61/110 (55%), Gaps = 9/110 (8%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
L V V++AR+L KD G S PYV G Q+ +T LNPVWNE EF V DP++
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60
Query: 77 MDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126
+ L +EV++ R+ K+ FLG V++ S+ G EG ++ PL
Sbjct: 61 ---DTLTVEVWDKDRF-----SKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 1e-17
Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQ---RKRTSTKFRDLNPVWNEPLEFIVSD 73
L V+++ AR+L PKD G S PYV DG +K+T LNPVWNE EF V
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60
Query: 74 PKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
P+ ELEIEVY+ R+ ++ F+G+V +
Sbjct: 61 PEL---AELEIEVYDKDRF-----GRDDFIGQVTI 87
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-13
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-KKWVRTRTITDCFDPRWNEQYTWQVY 679
L + ++ AR L G +D Y G K+ +T+ + + +P WNE + + V
Sbjct: 1 LRVTVIEARNLPAK----DLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVL 56
Query: 680 DP-CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLE-NNKVYTTSYPL 730
DP LTV V+D R D +G++ I +S L + K PL
Sbjct: 57 DPESDTLTVEVWDKDRFSKDDF-------LGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 4e-13
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWV---RTRTITDCFDPRWNEQYTWQ 677
L + ++ A+ L P G +D Y G + +T+ + + +P WNE +T++
Sbjct: 1 LRVTVISAKNLPPKD----LNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFE 56
Query: 678 VYDP-CTVLTVGVFDNWRMFAD 698
V P L + V+D R D
Sbjct: 57 VTLPELAELRIEVYDYDRFGKD 78
|
Length = 85 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-12
Identities = 41/131 (31%), Positives = 61/131 (46%), Gaps = 26/131 (19%)
Query: 18 LVVEVVDARDLLPKD------GQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIV 71
L + V++A+DL+ KD +G S PYVI Q ++ +LNP WNE E +V
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62
Query: 72 SDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL-CGSQFARRG-DEGLVYFPLEK- 128
+ +ELEIE++ D+ K+ FLGR+ + GS + DE + PLE
Sbjct: 63 DEVPG---QELEIELF-DE-----DPDKDDFLGRLSIDLGSVEKKGFIDE---WLPLEDV 110
Query: 129 -----KSVFSW 134
W
Sbjct: 111 KSGRLHLKLEW 121
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-12
Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIAD--FDGQR---KRTSTKFRDLNPVWNEPLE 68
T +L V V+ AR+L P DG+G S PYV G++ K+TS K LNPV+NE
Sbjct: 12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFS 71
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRV 106
F V + + L I V S +N +G+V
Sbjct: 72 FDVPAEQLEEV-SLVITV-----VDKDSVGRNEVIGQV 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 6e-12
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 10 QQQFTVR------KLVVEVVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRD 58
+ Q T+R KL+V V R+L P D PYV R++TS K +
Sbjct: 4 RIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDN 63
Query: 59 LNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
LNPV++E EF VS + L++ V N K + + R+ LG+V +
Sbjct: 64 LNPVFDETFEFPVSLEELKR-RTLDVAVKNSKSFLS---REKKLLGQVLI 109
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 4e-11
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 39/146 (26%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
K+ + VV A+ L+ KD G+S PYV +KRT T ++LNPVWNE F
Sbjct: 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHF------- 54
Query: 77 MDC----EELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGL----------- 121
+C + +++ V+++ + R+K +F R D+ L
Sbjct: 55 -ECHNSSDRIKVRVWDE---------DDDIKSRLK---QKFTRESDDFLGQTIIEVRTLS 101
Query: 122 ----VYFPLEKKSVFSWIRGEIGLRI 143
V++ LEK++ S + G I L I
Sbjct: 102 GEMDVWYNLEKRTDKSAVSGAIRLHI 127
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 8e-11
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 25/119 (21%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKI-----RTSSHYKKSKLASYRACDPHDSPEWNQVF 347
L V + +AR L P + PYVK+ R+ +++K +PEWNQ F
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKT-----VKKTLNPEWNQTF 72
Query: 348 ALFH-NKNDSVSATLEITVWDSP---TENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLE 402
+ + TLE+TVWD +FLG V DL+D + D P WY L+
Sbjct: 73 EYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADALLDD------EPHWYPLQ 125
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-10
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 15/106 (14%)
Query: 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTW 676
L + I+ AR L P G +D Y K+ +T+ + + +P WNE + +
Sbjct: 1 TLTVKIISARNLPPKD----KGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEF 56
Query: 677 QVYDPCT-VLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENN 721
+V P L + V+D F D IG++ I +S L
Sbjct: 57 EVPPPELAELEIEVYD-KDRF------GRDDFIGQVTIPLSDLLLG 95
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-10
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 18 LVVEVVDARDLLPKD--GQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPK 75
L V VV+A+DL KD G+G S PY I QR +T T LNP WN EF + +
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62
Query: 76 NMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+ L++ ++ DK G K+ +LG +
Sbjct: 63 ---NQLLKLILW-DKDRFAG---KD-YLGEFDI 87
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-09
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNM 77
L V + A++L SPYV +++ K R NPVW E F+V +P+N
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPEN- 60
Query: 78 DCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVY---FPLEKKSV 131
+ELEIEV +DK + LG + L S+ + + L FPL+
Sbjct: 61 --QELEIEVKDDKTGKS--------LGSLTLPLSELLK--EPDLTLDQPFPLDNSGP 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-09
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNM 77
L V+V+ A L D G S P+ + + R +T T ++ LNP WN+ F + D ++
Sbjct: 3 LQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDV 62
Query: 78 DCEELEIEVYNDKRYCNGSGRKNHFLGRV 106
LE+ VY++ + +K FLG+V
Sbjct: 63 ----LEVTVYDEDK-----DKKPEFLGKV 82
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-09
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEPLEFIV 71
L ++ A+ L D G S PYV + + RT T + NP +NE L +
Sbjct: 16 ALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG 75
Query: 72 SDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLC 109
+++ + L + V ++ R+ N FLG ++
Sbjct: 76 ITEEDIQRKTLRLLVLDEDRF------GNDFLGETRIP 107
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 4e-09
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 629 RGLLPMKTKNGGK------GSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPC 682
GLL ++ G S+D Y V G + V+TR I +P WNE+ T V +P
Sbjct: 1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPM 60
Query: 683 TVLTVGVFDNWRMFADAS 700
L + VFD D S
Sbjct: 61 APLKLEVFDKDTFSKDDS 78
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 7e-09
Identities = 39/142 (27%), Positives = 58/142 (40%), Gaps = 29/142 (20%)
Query: 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWV--RTRTITDCFDPRWNEQYT 675
+G+L + I ARGL K + G+ D Y + RT+ D +P WNE
Sbjct: 1 IGVLAVTIKSARGL---KGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNE--- 54
Query: 676 WQVY-------DPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSY 728
Y +P L + V+D +++R D IG +S+L N
Sbjct: 55 -TKYILVNSLTEP---LNLTVYDF-------NDKRKDKLIGTAEFDLSSLLQNPEQENLT 103
Query: 729 PLLVLLRTGLKKMGEIELAVRF 750
LLR G K +GE+ +RF
Sbjct: 104 --KNLLRNG-KPVGELNYDLRF 122
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-08
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
L V VV +L +D SS PYV+ Q+ +T ++LNPVWNE L V +P
Sbjct: 3 LLKVRVVRGTNLAVRD-FTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPM- 60
Query: 77 MDCEELEIEVYNDK 90
L++EV+ DK
Sbjct: 61 ---APLKLEVF-DK 70
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADF-------DGQRKRTSTKFRDLNPVWNEPLE 68
+ L VE+++AR+LLP D GSS P+V + D +T K + L P+++E E
Sbjct: 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFE 75
Query: 69 FIVSDP 74
F V
Sbjct: 76 FNVPPE 81
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-08
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
+L V++ARDL PKD G+S P+V ++GQ TS + P WNE EF + + +
Sbjct: 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGAD 60
Query: 77 MDCEELEIEVYNDKRYCNGSGRKNHFLGRV 106
L +EV++ KN FLG+V
Sbjct: 61 ---SPLSVEVWDWDLV-----SKNDFLGKV 82
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-08
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 12/93 (12%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKR-TSTKFRDLNPVWNEPLEFIV 71
KL VEV +A++L+P D G S PYV I D + K+ T T + LNPVWNE F +
Sbjct: 14 KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDL 73
Query: 72 SDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLG 104
P + D L IEV++ R +N F+G
Sbjct: 74 K-PADKD-RRLSIEVWDWDRTT-----RNDFMG 99
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-08
Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 21/140 (15%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYV-IADFDGQRKR------TSTKFRDLNPVWNEPLEFI 70
L V+V+ DL KD G+S PYV I+ +D T T + LNP WNE F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 71 VSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVK--LCGSQFARRGDEGLV---YFP 125
V +P+ L EV+++ R ++ FLG+V+ L G+E +
Sbjct: 62 V-NPRE---HRLLFEVFDENRL-----TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYL 112
Query: 126 LEKKSVFSWIRGEIGLRIYY 145
L +S S ++G + L + Y
Sbjct: 113 LRPRSSKSRVKGHLRLYMAY 132
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-08
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 16 RKLVVEVVDARDLLPKDGQGSSSPYV----IAD-FDGQRKRTSTKFRDLNPVWNEPLEFI 70
R L+V ++ +L D G S P+V D + +T K + LNP +NE +
Sbjct: 13 RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD 72
Query: 71 VSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+ ++ + LEI V++ G+ N ++G ++L
Sbjct: 73 IK-HSDLAKKTLEITVWDKDI-----GKSNDYIGGLQL 104
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 9e-08
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKN 76
L V+V+ A +L D G S P+V +G++ +T T + LNPVWNE E V +
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVP---S 57
Query: 77 MDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
L++EVY+ R G K+ LG +
Sbjct: 58 RVRAVLKVEVYDWDR-----GGKDDLLGSAYI 84
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-07
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 18/106 (16%)
Query: 297 YLFVKIRKARGLVPNEA-----PYVKIR---TSSHYKKSKLASYRACDPHDSPEWNQVFA 348
L VKI AR L P + PYVK+ KK+K+ +P WN+ F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTL-----NPVWNETFE 55
Query: 349 LFHNKNDSVSATLEITVWDSPTEN---FLGGVCFDLSDVPVRDPPD 391
A LEI V+D F+G V LSD+ + +
Sbjct: 56 F--EVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHE 99
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 1e-07
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 18/95 (18%)
Query: 19 VVEVV--DARDL-LPKDGQGSSSPYVIADFDGQRK--RTSTKFRDLNPVWNEPLEFIVSD 73
V+ V AR L G+ PYV +R+ RT K NPVWNE +V
Sbjct: 3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILV-- 60
Query: 74 PKNMDCEELEIEVY--NDKRYCNGSGRKNHFLGRV 106
N E L + VY NDK RK+ +G
Sbjct: 61 --NSLTEPLNLTVYDFNDK-------RKDKLIGTA 86
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 22/107 (20%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKRTSTKFRDLNPVWNEPLEFIVSD 73
L V V++ RDL K G+ P+ KRT K + NP ++E F ++
Sbjct: 1 LSVRVLECRDLALKSN-GTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 74 PKNMDC------------EELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+ + EL +E+++ + FLG V++
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHA-----SMVSGDDFLGEVRI 101
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 10 QQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEF 69
Q+ + +L+V +V+ RDL P + G S PY Q +T LNP WN ++F
Sbjct: 9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQF 68
Query: 70 IVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGR 105
V K+++ + L I V++ + + FLGR
Sbjct: 69 FV---KDLEQDVLCITVFDRDFF-----SPDDFLGR 96
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-07
Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 18/112 (16%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
L V + +AR L + PYVK+ + + +P WN+ F
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVS----LGGKQKFKTKVVKNTLNPVWNETFEFPVL 56
Query: 353 KNDSVSATLEITVWDS---PTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRL 401
+ S TL + VWD ++FLG V LS++ W L
Sbjct: 57 DPE--SDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEG----ELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 20 VEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEF-IVSDPKNMD 78
+ +V+ ++L P D G S PYV ++ ++ + LNP W E + + D +
Sbjct: 4 IVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQI- 62
Query: 79 CEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
LEIEV+ DK +G+K+ F+GR ++
Sbjct: 63 ---LEIEVW-DKD----TGKKDEFIGRCEI 84
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNEPLE 68
T +L + ++ AR+L D G S PYV +G+R K+TS K LNP +NE L
Sbjct: 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALV 71
Query: 69 FIVSDPKNMDCEELEIEV 86
F V P+N+D L I V
Sbjct: 72 FDVP-PENVDNVSLIIAV 88
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-07
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRD-LNPVWNEPLEF-IVSDPK 75
LVV V+ AR+L K PY + G K+T T FR +P W+E L F I D K
Sbjct: 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKK 62
Query: 76 NMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+ L++ V++D + RK +G ++
Sbjct: 63 PI----LKVAVFDDDK------RKPDLIGDTEV 85
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-07
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 11/102 (10%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQV 678
G L++ ++ A GL GGK +D +CV + ++T TI +P WN+ +T+ +
Sbjct: 1 GFLQVKVIRASGL--AAADIGGK--SDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI 56
Query: 679 YDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLEN 720
D VL V V+D + +++P++ +GK+ I + +++N
Sbjct: 57 KDIHDVLEVTVYDEDK------DKKPEF-LGKVAIPLLSIKN 91
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-07
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 10 QQQFTVRKLVVEVVDARDLLPKDGQGS-SSPYVIADFDGQRKRTSTKFRDLNPVWNEPLE 68
Q F VR V V++AR L G P V + GQ+K TS K P +NE
Sbjct: 1 PQDFQVR---VRVIEARQL-----VGGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFF 52
Query: 69 FIVSDPKNMDCEE-LEIEVYNDKR 91
F + + ++ ++I VY+ +
Sbjct: 53 FNFHESPDELFDKIIKISVYDSRS 76
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 8e-07
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYV-----IADFDGQRKRTSTKFRDLNPVWNEPLEF 69
+ V ++ AR+L D G+S PYV D ++K+T K R LNPV+NE F
Sbjct: 17 ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIF 73
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 8e-07
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 20/118 (16%)
Query: 25 ARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEF----IVSDPKNM--D 78
ARDLL D G S P+ F Q + T L+P W++ L F + P+ + +
Sbjct: 10 ARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQN 69
Query: 79 CEELEIEVYNDKRYCNGSGRKNHFLGR------VKLCGSQFARRGDEGLVYFPLEKKS 130
+ +E++ D+ K+ FLGR VKL L +FP+ K
Sbjct: 70 PPLVVVELF-DQDSVG----KDEFLGRSVAKPLVKLDLE---EDFPPKLQWFPIYKGG 119
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 9e-07
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 619 GILELGILGARGLLP--MKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTW 676
G+L + ++ A+ L+ KG +D Y + + G + +++ I + +P+WNE Y
Sbjct: 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60
Query: 677 QVYD-PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730
V + P L + +FD D + +G++ I + ++E PL
Sbjct: 61 VVDEVPGQELEIELFDEDP---DKDDF-----LGRLSIDLGSVEKKGFIDEWLPL 107
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEPLEFIVS 72
L+V V+ ARDL P+D +PYV + ++RT T + LNP WN+ E+
Sbjct: 18 LIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNV 77
Query: 73 DPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRV 106
+ + LE+ V++ R +N FLG V
Sbjct: 78 RRETLKERTLEVTVWDYDRD-----GENDFLGEV 106
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPK 75
+L + + + R+L +D G+S PYV + G ++ T +++LNPVW+E + D
Sbjct: 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVT 60
Query: 76 NMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+ L I+V++ R G + F+G +
Sbjct: 61 ----QPLYIKVFDYDR-----GLTDDFMGSAFV 84
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 38 SPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSG 97
PYV F GQ+ +TS K NP WNE + F P + CE ++I++ + R N
Sbjct: 36 DPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFP-PL-CERIKIQIRDWDRVGNDDV 93
Query: 98 RKNHFL 103
HF+
Sbjct: 94 IGTHFI 99
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 19 VVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMD 78
V V+ AR LL K G++ YVI ++ TS K + +PVW E F + + +
Sbjct: 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGN 61
Query: 79 CEELEIEVYNDKRYCNGSGRKNHFLGRVKL-CGSQFARRGDEGLVYFPLE-KKSVFSWIR 136
+++ R G + FLG+V + +G +F LE K R
Sbjct: 62 GNRATLQLTVMHRNLLGL---DKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKER 118
Query: 137 GEIGLRI 143
GEI + I
Sbjct: 119 GEIEVDI 125
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQV 678
G+L + ++ A+ L GKG +D Y + G + +T+TI + +P+WN + +
Sbjct: 1 GVLRVHVVEAKDL--AAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPI 58
Query: 679 YDP-CTVLTVGVFDNWRMFAD 698
+ +L + ++D R
Sbjct: 59 FSAQNQLLKLILWDKDRFAGK 79
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKRTSTKFRDLNPVWNEPLEF 69
L ++++ A +L KD G+S P+V + D + T K ++LNP WNE F
Sbjct: 18 LTLKILKAVELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKNLNPHWNETFLF 72
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 28/98 (28%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKI----------RTSSHYKKSKLASYRACDPHDSPE 342
L V I + L +A P+VK+ + + KK L +PE
Sbjct: 15 LIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTL----------NPE 64
Query: 343 WNQVFALFHNKNDSVSATLEITVWD---SPTENFLGGV 377
+N+ F +D TLEITVWD + +++GG+
Sbjct: 65 FNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGL 102
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYV-IADFDG----QRKRTSTKFRDLNPVWNEPLEFIV 71
KL V +++A++L D G S PYV I ++K+T+ K R LNP +NE F V
Sbjct: 16 KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEV 75
Query: 72 SDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+ + L + V + R KN +G+V L
Sbjct: 76 P-FEQIQKVHLIVTVLDYDRI-----GKNDPIGKVVL 106
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-06
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 18 LVVEVVDARDLLPKD-GQGSSSPYVIADFDGQRK---RTSTKFRDLNPVWNEPLEFIVSD 73
LVV + A DL D G GSS PYV A F K T +DLNPVW E F++
Sbjct: 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEET-WFVLVT 61
Query: 74 PKNMDC-EELEIEVYNDKR 91
P + E L +++ R
Sbjct: 62 PDEVKAGERLSCRLWDSDR 80
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-06
Identities = 37/152 (24%), Positives = 50/152 (32%), Gaps = 31/152 (20%)
Query: 22 VVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVS---DPKNMD 78
VV ++L G+G F G +K+T +LNPVWNE E+ ++ DP
Sbjct: 2 VVSLKNLPGLKGKGD--RIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPD--- 56
Query: 79 CEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL--EKKSVFSWIR 136
E LEI V + GR N +G + G V PL
Sbjct: 57 -ESLEIVVKD----YEKVGR-NRLIGSATVSLQDLVSEG-LLEVTEPLLDSNGRP---TG 106
Query: 137 GEIGLRIYYYDELSEEEHQHPPPPQDEPPPPQ 168
I L + Y PP
Sbjct: 107 ATISLEVSY-----------QPPDGAVGGWAD 127
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 9e-06
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 16 RKLVVEVVDARDLLPKDGQ-GSSSPYV----IADFDGQRKR-TSTKFRDLNPVWNEPLEF 69
R+L V V+ +DL D + S PYV + D + KR TS K + LNPV+NE L +
Sbjct: 15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRY 74
Query: 70 IVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
V EEL V N + S +N FLG V++
Sbjct: 75 KVER------EELPTRVLNLSVWHRDSLGRNSFLGEVEV 107
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-05
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 15 VRKLVVEVVDARDL-LPKDGQGSS-SPYVIADF------DGQRKRTSTKFRD-LNPVWNE 65
L ++++ + L PK +GS PYV + D + +T + NPVWNE
Sbjct: 1 PLTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNE 60
Query: 66 PLEFIVSDP 74
EF V+ P
Sbjct: 61 TFEFDVTVP 69
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 24 DARDLLPKDGQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEEL 82
A DL +G G PYV +G + RT T LNPVW+E L V+ P +++
Sbjct: 9 KANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPN----QKI 64
Query: 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEG 120
+EV + ++ G K+ LG V++ S ++ ++G
Sbjct: 65 TLEVMDYEK--VG---KDRSLGSVEINVSDLIKKNEDG 97
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 625 ILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTV 684
++ A+ L+P G+GS+ AY + + RTRT +P WNE+ + V DP +
Sbjct: 6 VVDAQDLMP----KDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDP-SR 60
Query: 685 LTVGVFDNWRMFADASEERPDYRIGKIRIRVSTL 718
L+ V + ++ D R +G++RI ++
Sbjct: 61 LSNLVLE-VYVYNDRRSGRRRSFLGRVRISGTSF 93
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 29/91 (31%)
Query: 15 VRKLVVEVVDARDLLPKDGQGSSSPY----VIADFDGQR--------------------- 49
+ L V V++A+ LL KD G S PY ++ +
Sbjct: 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVP 86
Query: 50 ----KRTSTKFRDLNPVWNEPLEFIVSDPKN 76
K T K + LNPVWNE F V D N
Sbjct: 87 AKSIKVTEVKPQTLNPVWNETFRFEVEDVSN 117
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-05
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 18/92 (19%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIR---TSSHYKKSKLASYRACDPHDSPEWNQVFAL 349
L V + A+ L P + PYVK+ KK+K+ P WN+ F
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLN-----PVWNETFTF 55
Query: 350 FHNKNDSVSATLEITVWD--SPTEN-FLGGVC 378
+ A L I V+D ++ F+G V
Sbjct: 56 EVTLPE--LAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 10/108 (9%)
Query: 642 GSTDAYCVAKYGKKWV-RTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADAS 700
G++D Y KYG K V +++TI +P W+E++T + D L + VFD R D
Sbjct: 19 GTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTD-- 76
Query: 701 EERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAV 748
D+ +G + +STLE NK T L + + +G I L V
Sbjct: 77 ----DF-MGSAFVDLSTLELNK--PTEVKLKLEDPNSDEDLGYISLVV 117
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 20 VEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDC 79
V V A L +D G + PYVI +G+ R+ + L+P ++ F P++
Sbjct: 7 VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRS--- 63
Query: 80 EELEIEVYNDKRYCNGSGRKNHFLGRVKLCGS 111
++I+V+N C+ FLG+ L
Sbjct: 64 -PIKIQVWNSNLLCDE------FLGQATLSAD 88
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYV-IADFDGQRK--RTSTKFRDLNPVWNEPLEF 69
FT+R +V A +L G S PYV + D +G+R+ +T T + LNP W+E EF
Sbjct: 3 FTIR-----IVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDE--EF 55
Query: 70 IVSDPKN 76
+ P
Sbjct: 56 ELEVPAG 62
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 341 PEWNQV--FALFHNKNDSVSATLEITVWD---SPTENFLGGVCFDLSDVPVRDPPDSPLA 395
P+WN F +F +N L++ +WD +++LG L +V + +
Sbjct: 48 PKWNYWCEFPIFSAQNQL----LKLILWDKDRFAGKDYLGEFDIALEEV--FADGKTGQS 101
Query: 396 PQWYRLEGEASDQNNRVSGDIQL 418
+W L+ + + VSG+I L
Sbjct: 102 DKWITLKSTRPGKTSVVSGEIHL 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-05
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFD--GQRKRTSTKFRDLNPVWNEPLEFIVSDPK 75
L+V+ + A L + GSS+PY + + D Q+ ++ST+ NP W+E F +S
Sbjct: 1 LLVKNIKANGLS--EAAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNS 58
Query: 76 NMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130
EL EVY+ NG + FLG + R+ G FPL+ +
Sbjct: 59 K----ELLFEVYD-----NGKKSDSKFLGLA-IVPFDELRKNPSGRQIFPLQGRP 103
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 31 KDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90
KDG+GS+ Y +A + + RT T NP WNE + V DP C L + V+++
Sbjct: 18 KDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP----CTVLTVGVFDNS 73
Query: 91 RYCNGSGRKNH-FLGRVKLCGSQFARRGDEGLVY---FPL 126
+ + +G+V++ ++ VY +PL
Sbjct: 74 QSHWKEAVQPDVLIGKVRI----RLSTLEDDRVYAHSYPL 109
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-05
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 13/113 (11%)
Query: 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVA 516
LRVTV+EA++L A +L + P ++V L + + + ++ + W+E F
Sbjct: 1 LRVTVIEARNL-PAKDLNGKSDPYVKVS----LGGKQKFKTKVVKNTLNPVWNETFEFPV 55
Query: 517 AEPFEDSLILLV--EDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPL 567
+P D+L + V +DR +KD LG +P+S + +D W PL
Sbjct: 56 LDPESDTLTVEVWDKDRFSKD---DFLGEVEIPLSEL---LDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-05
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQ 673
P + ++ + A GL +K G D Y + K + VR+ D P ++ Q
Sbjct: 1 PQVVTQVHVHSAEGL----SKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQ 53
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 8e-05
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDP 74
L + +V+ ++L KD GSS PY I D + RT+T ++ LNP W E E+ V P
Sbjct: 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGE--EYTVHLP 57
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 9e-05
Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 4/99 (4%)
Query: 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFV 515
L V ++ A++L + VK L ++ + ++ + W+E F
Sbjct: 1 TLTVKIISARNL---PPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFE 57
Query: 516 AAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQR 554
P L + V D+ + +G +P+S +
Sbjct: 58 VPPPELAELEIEVYDKD-RFGRDDFIGQVTIPLSDLLLG 95
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQ 677
+G L + I+ R L P + G +D YC G + +T+ ++D +P+WN +
Sbjct: 14 IGRLMVVIVEGRDLKPCNSN----GKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFF 69
Query: 678 VYD-PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVS 716
V D VL + VFD F+ PD +G+ IRV+
Sbjct: 70 VKDLEQDVLCITVFDR-DFFS------PDDFLGRTEIRVA 102
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 15/90 (16%)
Query: 304 KARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVS 358
+ + L P + PYVK R + KSK+ S P+W + F H +D S
Sbjct: 8 EGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLN-----PQWLEQFD-LHLFDDQ-S 60
Query: 359 ATLEITVWD---SPTENFLGGVCFDLSDVP 385
LEI VWD + F+G DLS +P
Sbjct: 61 QILEIEVWDKDTGKKDEFIGRCEIDLSALP 90
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIAD--FDGQR---KRTSTKFRDLNPVWNEP 66
Q T +L V V+ AR L D G + PYV + + +R K+T K LNPV+NE
Sbjct: 11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNES 70
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGS 111
F + + ++ +E V + R KN +GR+ L
Sbjct: 71 FVFDIPS-EELEDISVEFLVLDSDRVT-----KNEVIGRLVLGPK 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRT-STKF--RDLNPVWNEPLEF 69
F +L V ++ A DL D G+S PYV +K+ TK + LNPV+NE F
Sbjct: 13 FQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTF 72
Query: 70 IVSDPKNMDCEELEIEVYNDKRY 92
V + + L VY+ R+
Sbjct: 73 KVP-YSELGNKTLVFSVYDFDRF 94
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 22/102 (21%)
Query: 18 LVVEVVDARDLLPKD-GQGSSSPYV----IADFDGQRKR-TSTKFRDLNPVWNEPLEFIV 71
L V + + R+L D + S+PYV + D Q KR TS K NPV+NE L++ +
Sbjct: 16 LEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHI 75
Query: 72 SDPKNMDCEELE-----IEVYNDKRYCNGSGRKNHFLGRVKL 108
S +LE + V++ R+ GR N FLG V++
Sbjct: 76 SK------SQLETRTLQLSVWHHDRF----GR-NTFLGEVEI 106
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 24/141 (17%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRT-STKFRDLNPVWNEPLEFIVSDPK 75
L V V++A+DL+P D +V A Q RT ++ R+ NP WNE L F+ ++P
Sbjct: 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60
Query: 76 NMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLV---YFPLE----- 127
+ L + V + K+ LGR + + RR D+ V +F LE
Sbjct: 61 E---DHLILSVEDRV-----GPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGA 112
Query: 128 ----KKSVFSWIRGEIGLRIY 144
KK F+ I LR+
Sbjct: 113 MEQKKKRKFA---SRIHLRLC 130
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150 |
| >gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 32 DGQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90
G SPY +G+ T K + NP WN EF+V+D + + + V +D+
Sbjct: 8 SKTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRK---SRVTVVVKDDR 64
Query: 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126
R + LG V + + G +FPL
Sbjct: 65 ------DRHDPVLGSVSISLNDLIDATSVGQQWFPL 94
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKF--RDLNPVWNEPLEFIV 71
VR V VV AR+L PKD G S PY+ ++ + LNPV+ + E
Sbjct: 1 LVR---VYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEA 57
Query: 72 SDPKNMDCEELEIEVYN 88
+ P N L+I V +
Sbjct: 58 TLPGNSI---LKISVMD 71
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYV---IADFDGQRKRTSTKFRDLNPVWNEPLEFIV-SD 73
L V V+ A ++ D + YV + ++KRT T +NPVWNE EF + S
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ 61
Query: 74 PKNMDCEELEIEVYND 89
KN+ LE+ V ++
Sbjct: 62 VKNV----LELTVMDE 73
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQ-RKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
L V ++ A+ L D G PYVI Q RK K NP WNE +F V P
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW 62
Query: 77 MDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+L + + DK + F+G +
Sbjct: 63 GGDTKLILRIM-DKDNFSDDD----FIGEATI 89
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 7e-04
Identities = 23/98 (23%), Positives = 30/98 (30%), Gaps = 9/98 (9%)
Query: 152 EEHQHPPP---PQDEPPPPQPPQQQPGVCVVEEGRVFEVPGGHVEVCHPVPEIYHGQPPP 208
+HQ+ PP Q P QPP+ Q P P + P
Sbjct: 88 PQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQP-----EQPL 142
Query: 209 QAPIIEESQPHGVHVQPEPVQIPPHDEPI-PTAVPAAE 245
Q P+ + P V P +P P A P E
Sbjct: 143 QQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPE 180
|
Length = 333 |
| >gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 9e-04
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNEPLE 68
T +L V VV AR+L+ +G+ ++ P+V DG++ K+TS K D NP++NE +
Sbjct: 13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMI 72
Query: 69 FIVSDP 74
F V
Sbjct: 73 FSVPAI 78
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 25/137 (18%)
Query: 298 LFVKIRKARGLVPNE-----APYVKIRTSSHYKKSKLASYRACDPHD-SPEWNQ--VFAL 349
L V++ A+ L+P + + YV++ K+++ P D +P WN+ VF +
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTK------PKDLNPVWNEKLVFNV 55
Query: 350 FHNKNDSVSATLEITVW----DSPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEA 405
+ + + LE+ V+ +FLG V + P S Q Y LE
Sbjct: 56 -SDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFV----PPSEAVVQRYPLEKRG 110
Query: 406 SDQNNRVSGDIQLAVWI 422
+RV G+I L V+I
Sbjct: 111 --LFSRVRGEIGLKVYI 125
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.001
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 10/103 (9%)
Query: 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD 680
+ + ++ A+GL+ K K G ++D Y + GK RT+TI +P WNE++ ++ ++
Sbjct: 3 ISITVVCAQGLIA-KDKTG---TSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHN 58
Query: 681 PCTVLTVGVFD-----NWRMFADASEERPDYRIGKIRIRVSTL 718
+ V V+D R+ + E D+ +G+ I V TL
Sbjct: 59 SSDRIKVRVWDEDDDIKSRLKQKFTRESDDF-LGQTIIEVRTL 100
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 17/114 (14%)
Query: 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKY-GKKWVRTRTITDCFDPRWNEQYTWQVY 679
L + ++ A L GK +D + G+K +T+TI +P WNE + V
Sbjct: 1 LTVDVISAENLPSADR--NGK--SDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPV- 55
Query: 680 DPC---TVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730
P VL V V+D W D + D +G I +S LE + + PL
Sbjct: 56 -PSRVRAVLKVEVYD-W----DRGGK--DDLLGSAYIDLSDLEPEETTELTLPL 101
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 13/95 (13%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLN--PVWNEPLEF 69
K+ V+VV A DL + G P+V + G ++++ +TK ++ N P +NE +F
Sbjct: 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQF 59
Query: 70 IVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLG 104
I+ + + + EL I V K YC R + +G
Sbjct: 60 ILGNEDDPESYELHICV---KDYC--FARDDRLVG 89
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120 |
| >gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 32/97 (32%), Positives = 54/97 (55%), Gaps = 12/97 (12%)
Query: 18 LVVEVVDARDLLPKD-GQGSSSPYV----IADFDGQRKRTSTKFRD-LNPVWNEPLEFIV 71
L V V + R+L D + S+PYV + D Q KR ++ R+ NPV+NE L++ +
Sbjct: 17 LNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSI 76
Query: 72 SDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
S + ++ L++ V++ R+ GR N FLG V++
Sbjct: 77 SHSQ-LETRTLQLSVWHYDRF----GR-NTFLGEVEI 107
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.002
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 625 ILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQ 673
+L ARGLL K K+G + DAY + + GK+ T P W E+
Sbjct: 5 VLQARGLLC-KGKSG---TNDAYVIIQLGKEKYSTSVKEKTTSPVWKEE 49
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVA---KYGKKWVRTRTITDCFDPRWNEQYT 675
G+L + I A L + G GS+D Y A K+GK TR I +P W E T
Sbjct: 1 GVLVVTIHRATDL---PKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEE--T 55
Query: 676 WQV 678
W V
Sbjct: 56 WFV 58
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 23/86 (26%), Positives = 28/86 (32%), Gaps = 8/86 (9%)
Query: 147 DELSEEEHQHPPPPQDEPPPPQPPQQQPGVCVVEEGRVFEVPGGHVEVCHPVPEIYHGQP 206
E P P Q P P Q P QP + V P P+ H P
Sbjct: 109 PEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPV-------SPQVAPAPQPVHSAP 161
Query: 207 PPQAPIIEESQPHGVHVQPEPVQIPP 232
P + ++P QPEPV P
Sbjct: 162 QPAQQAFQPAEPV-AAPQPEPVAEPA 186
|
Length = 333 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKR-TSTKFRDLNPVWNEPLEFIV 71
L V V+ A++L DG PYV + D KR T + NP +NE L +
Sbjct: 14 TLFVMVMHAKNLPLLDGS-DPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDG 72
Query: 72 SDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQF 113
+++ L++ V++ +N FLG V + +
Sbjct: 73 LPVEDLQQRVLQVSVWSHDSL-----VENEFLGGVCIPLKKL 109
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQRK--RTSTKFRDLNPVWNEPLEFIVSDPK 75
L + +++A++L K G+ PY D Q + RT T + LNP W E EF+ DP
Sbjct: 2 LRLRILEAKNLPSK---GTRDPYCTVSLD-QVEVARTKTVEK-LNPFWGE--EFVFDDPP 54
Query: 76 NMDCEELEIEVYN-DKR 91
D + YN DKR
Sbjct: 55 P-DVTFFTLSFYNKDKR 70
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117 |
| >gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 4/97 (4%)
Query: 150 SEEEHQHPPPPQDEPPPPQPPQQQPGVCVVEEGRVFEVPGGH-VEVCHPVPEIYHGQPPP 208
E E P P PP Q + V E +V + + QP P
Sbjct: 79 QEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQP 138
Query: 209 QAPIIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAE 245
+ P+ + P V P P + +P A AE
Sbjct: 139 EQPLQQPVSP---QVAPAPQPVHSAPQPAQQAFQPAE 172
|
Length = 333 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYV-IADFDGQR----KRTSTKFRDLNPVWNEPLEFIV 71
+L V+++ A+ LL D S P+V I G + K+TS ++P +NE F V
Sbjct: 15 RLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKV 74
Query: 72 SDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRV 106
+ ++ L VY + N F+GR+
Sbjct: 75 P-QEELENVSLVFTVYG-----HNVKSSNDFIGRI 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 12/104 (11%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYV-IADFDGQR----KRTSTKFRDLNPVWNEPLEFIV 71
+L V V+ AR L D +S YV ++ + K+T +P +NE F V
Sbjct: 16 RLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKV 74
Query: 72 SDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFAR 115
+ +D L + V +G RK+ LGRV L +AR
Sbjct: 75 -TSRQLDTASLSLSVMQ-----SGGVRKSKLLGRVVLGPFMYAR 112
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVA 516
LRVTV+ A++L + VK L Q T++ + ++ + W+E F
Sbjct: 1 LRVTVISAKNL---PPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEV 57
Query: 517 AEPFEDSLILLVEDR 531
P L + V D
Sbjct: 58 TLPELAELRIEVYDY 72
|
Length = 85 |
| >gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 14 TVRKLVVEVVD-------ARDLLPKDGQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNE 65
T++ + E VD R +PK G PYV D D +TSTK + +PVWNE
Sbjct: 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNE 64
Query: 66 PLEFIVSDPKNMDCEELEIEVYND 89
V + +N LE+ V++D
Sbjct: 65 EFTTEVHNGRN-----LELTVFHD 83
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTST--KFRDLNPVWNEPLEFIVSDP 74
L + ++ A DL + G Y + D K+++ + NP WNE L F + +
Sbjct: 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDER 60
Query: 75 -KNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
L IEV YC + +G V++
Sbjct: 61 LLQQGRLALTIEV-----YCERPSLGDKLIGEVRV 90
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.004
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 10 QQQFTVRKLVVEVVDARDLLPKDGQ-GSSSPYVIA---DFDGQRKRTSTKFRDLNPVWNE 65
Q +L V ++ AR+L P+ P+V + + ++ K + NP ++E
Sbjct: 8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDE 67
Query: 66 PLEFIVS 72
F VS
Sbjct: 68 TFVFQVS 74
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1006 | |||
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 100.0 | |
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 100.0 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.91 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.9 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.9 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.89 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.88 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.87 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.87 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.85 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.84 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.83 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.83 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.83 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.82 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.82 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.81 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.81 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.79 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.79 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.79 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.78 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.77 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.77 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.77 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.77 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.77 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.77 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.76 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.76 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.75 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.74 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.74 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.74 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.74 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.74 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.74 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.73 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.73 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.73 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.73 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.73 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.73 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.72 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.72 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.72 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.72 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.72 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.72 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.71 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.71 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.71 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.71 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.71 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.71 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.71 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.71 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.71 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.71 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.71 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.71 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.7 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.7 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.7 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.7 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.7 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.7 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.69 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.69 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.69 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.69 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.69 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.69 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.69 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.69 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.68 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.68 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.67 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.67 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.67 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.67 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.67 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.67 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.66 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.66 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.66 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.66 | |
| PF04842 | 683 | DUF639: Plant protein of unknown function (DUF639) | 99.66 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.66 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.66 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.66 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.65 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.65 | |
| PLN03008 | 868 | Phospholipase D delta | 99.65 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.65 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.65 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.65 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.65 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.64 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.64 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.64 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.64 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.63 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.63 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.63 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.63 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.63 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.63 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.63 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.63 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.63 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.62 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.62 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.62 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.62 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.62 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.61 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.61 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.61 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.61 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.61 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.61 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.61 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.61 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.61 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.61 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.6 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.6 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.6 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.59 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.58 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.58 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.58 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.57 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.57 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.57 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.57 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.57 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.57 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.56 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.56 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.56 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.56 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.56 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.56 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.56 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.56 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.55 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.55 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.55 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.55 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.55 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.54 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.54 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.54 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.54 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.53 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.53 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.53 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.52 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.52 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.51 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.51 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.51 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.51 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.51 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.5 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.5 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.5 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.5 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.5 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.49 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.49 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.48 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.48 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.48 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.48 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.47 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.47 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.47 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.47 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.46 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.46 | |
| PLN03008 | 868 | Phospholipase D delta | 99.46 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.45 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.44 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 99.44 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.44 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.43 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.43 | |
| PF06398 | 359 | Pex24p: Integral peroxisomal membrane peroxin; Int | 99.43 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.43 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.42 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.41 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.4 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.4 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.4 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.38 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.38 | |
| PLN02270 | 808 | phospholipase D alpha | 99.37 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.34 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.32 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.29 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.26 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.23 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 99.16 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.11 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.06 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.06 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.05 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.04 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.03 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.01 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.0 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.96 | |
| PF11696 | 642 | DUF3292: Protein of unknown function (DUF3292); In | 98.92 | |
| PLN02270 | 808 | phospholipase D alpha | 98.9 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 98.9 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.89 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.89 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.86 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.85 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.83 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.83 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.82 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.8 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 98.78 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 98.76 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.76 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.75 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.73 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.72 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.67 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.63 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.5 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.49 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.23 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.08 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 97.98 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 97.9 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 97.71 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 97.66 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.62 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.4 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.01 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 96.99 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.96 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.82 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 96.74 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 96.66 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 96.59 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 96.3 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.03 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.67 | |
| PF08372 | 156 | PRT_C: Plant phosphoribosyltransferase C-terminal; | 95.6 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 95.3 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.79 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.78 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 94.66 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 94.54 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.27 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 94.16 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 93.23 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 93.12 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 92.79 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 92.59 | |
| KOG1329 | 887 | consensus Phospholipase D1 [Lipid transport and me | 91.74 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 91.68 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 91.58 | |
| PF02453 | 169 | Reticulon: Reticulon; InterPro: IPR003388 Eukaryot | 91.44 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 90.96 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 90.92 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 90.27 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 90.02 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 89.91 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 89.43 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 88.84 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 87.07 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 84.68 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 84.18 |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=339.67 Aligned_cols=543 Identities=18% Similarity=0.250 Sum_probs=382.6
Q ss_pred CCcccEEEEEEEEecCCCCCC--CCCCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 12 QFTVRKLVVEVVDARDLLPKD--GQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 12 ~~~~~~L~V~v~~a~~L~~~~--~~g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
....|+|.|+|.+|++|...+ .++..|||+.+.+.+ ...||+++++++||+|||+|.+.+... ++.|.++|||
T Consensus 432 ~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~----~d~L~LslyD 507 (1227)
T COG5038 432 GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSF----TDPLNLSLYD 507 (1227)
T ss_pred CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEeccc----CCceeEEEEe
Confidence 456899999999999998887 578999999999854 447999999999999999999999876 5689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecCcccccCCCCCCCCCCCCCC
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPPQ 168 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1006)
.+.. ++|+.+|+..++|..+...+...+.-+.+... .+..|++...+.|++....
T Consensus 508 ~n~~-----~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~---~k~vGrL~yDl~ffp~~e~----------------- 562 (1227)
T COG5038 508 FNSF-----KSDKVVGSTQLDLALLHQNPVKKNELYEFLRN---TKNVGRLTYDLRFFPVIED----------------- 562 (1227)
T ss_pred cccc-----CCcceeeeEEechHHhhhccccccceeeeecc---CccceEEEEeeeeecccCC-----------------
Confidence 8888 79999999999999976665555545544432 2448999999999998631
Q ss_pred CCCCCCCcccccCCcccccCCCCccccCCCCccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhh
Q 042999 169 PPQQQPGVCVVEEGRVFEVPGGHVEVCHPVPEIYHGQPPPQAPIIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIRK 248 (1006)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 248 (1006)
+... .+. +++ .
T Consensus 563 ---k~~~---------------------~~s--------------~e~--~----------------------------- 573 (1227)
T COG5038 563 ---KKEL---------------------KGS--------------VEP--L----------------------------- 573 (1227)
T ss_pred ---cccc---------------------ccc--------------cCC--c-----------------------------
Confidence 1000 000 000 0
Q ss_pred cccccccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccccccceEEEEEEEeeCCCCC---C-CcEEEEEECCe-
Q 042999 249 MQSGCAERVNVLKRPNGDYSPKVINSSKPNGEVPTERIHPYDLVEPMMYLFVKIRKARGLVPN---E-APYVKIRTSSH- 323 (1006)
Q Consensus 249 ~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~l~V~v~~a~~l~~~---~-dpyv~v~~~~~- 323 (1006)
+ +...| .+.+.+.+.++|... - .-++++++..+
T Consensus 574 --------------e-----------d~n~G-----------------I~k~tl~~~~~l~~~~~~~~~~~a~l~~~~ke 611 (1227)
T COG5038 574 --------------E-----------DSNTG-----------------ILKVTLREVKALDELSSKKDNKSAELYTNAKE 611 (1227)
T ss_pred --------------c-----------cCCcc-----------------eeEEEeeccccccCccccccceeEEEEecceE
Confidence 0 00001 133555555555432 2 33388888774
Q ss_pred eeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEEcCCCCCccEEEEEeCCcCCCCCCCCCCCcceeEEccc
Q 042999 324 YKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEG 403 (1006)
Q Consensus 324 ~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~D~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~ 403 (1006)
.+.|+.+ +.+.+|.||+.+...+.+.. ...+.+.++|....+.+|....+|.++..+. ...-+||++..
T Consensus 612 V~st~~~-----k~t~~~~wn~~~~~~v~~~~--ns~~~~~~~d~~~g~~i~~~~~~l~~li~~t----~dt~~~f~~~~ 680 (1227)
T COG5038 612 VYSTGKL-----KFTNHPSWNLQYNVLVTDRK--NSSIKVVTFDVQSGKVIATEGSTLPDLIDRT----LDTFLVFPLRN 680 (1227)
T ss_pred Eecccee-----eeccCCceeeecceEeccCc--ceeEEEEecccccCceeccccccchHhhhcc----ccceEEEEcCC
Confidence 5777999 99999999999999999988 8899999999767888999989998887752 22248999996
Q ss_pred CCCCCCcceeeEEEEEEEeecCCCCcCccccCCCCCCccccccccccCCceEEEEEEEEEeecCcccCCCCCCCCCCcEE
Q 042999 404 EASDQNNRVSGDIQLAVWIGTQADEAFPEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRV 483 (1006)
Q Consensus 404 ~~~~~~~~~~g~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~d~~~~~dpyv 483 (1006)
++ |++.++. .|..-+.+..+ .++-+....++.++|.|..|.||... ..++.+|||+
T Consensus 681 ~k----g~I~~t~---~W~Pi~~~~~~--------------~s~~~~~~pIg~irv~v~~andl~n~---i~g~~~dPya 736 (1227)
T COG5038 681 PK----GRIFITN---YWKPIYNAGGS--------------SSKTVYDTPIGAIRVSVRKANDLRNE---IPGGKSDPYA 736 (1227)
T ss_pred Cc----ceEEEEe---ccceeeccccc--------------cceeeecCccceEEEEeehhhccccc---ccCcccccce
Confidence 64 3444443 34222222111 12334566688899999999999843 7889999999
Q ss_pred EEEECC-ccceeeeeecCCCCCCceecceeeeeeccCCCCcEEEEEEECCCCccccceeEEEEEeccccccccccCcc--
Q 042999 484 KAQLAL-QSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHV-- 560 (1006)
Q Consensus 484 ~v~lg~-~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~-- 560 (1006)
+|.+++ .++||-... .+.||.|++..+..+..+. +.|.++++|....+ .|..+|++.++++++.++.++...
T Consensus 737 ~v~~n~~~k~rti~~~---~~~npiw~~i~Yv~v~sk~-~r~~l~~~~~~~sg-ddr~lg~~~i~vsn~~~k~~~s~~~~ 811 (1227)
T COG5038 737 TVLVNNLVKYRTIYGS---STLNPIWNEILYVPVTSKN-QRLTLECMDYEESG-DDRNLGEVNINVSNVSKKDEDSALME 811 (1227)
T ss_pred EEEecceeEEEEeccc---CccccceeeeEEEEecCCc-cEEeeeeecchhcc-ccceeceeeeeeeeeeecCCCcceEE
Confidence 999987 677777654 8999999998888777665 45899999988655 689999999999998874222100
Q ss_pred ------cceEEeCcCCCCCCCccceeeeEEEEEee---------------------------------------------
Q 042999 561 ------ASKWFPLEGSCGRGCARSYCGRIQLKLCL--------------------------------------------- 589 (1006)
Q Consensus 561 ------~~~w~~L~~~~~~~~~~~~~G~l~l~v~l--------------------------------------------- 589 (1006)
...-..+.+ ....|.+.+.+.+
T Consensus 812 ~i~g~~~t~~l~~~~-------~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~~~e~~~~~~~~~~l~ek~~~~~D~~~~ 884 (1227)
T COG5038 812 TIDGAEETGKLSLTG-------KKVKGTITYKCRFYPAVIVLSLEEVRYVDKVSSEKRKSEKRKSALDEKTISLVDKEDS 884 (1227)
T ss_pred eecCccccccccccc-------CCcceeEEEEEEEEeecccCChHHhcchhhhhhHHHHhhhhhcccCccccchhccccc
Confidence 000001100 0111111111111
Q ss_pred -----------------------------------------------------eC-Ccccccccc---------------
Q 042999 590 -----------------------------------------------------EG-GYHVLDEAA--------------- 600 (1006)
Q Consensus 590 -----------------------------------------------------~~-~~~~~d~~~--------------- 600 (1006)
+. .|+..-.+.
T Consensus 885 ~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ 964 (1227)
T COG5038 885 VEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFFDDASHPQIVSSKAPTRGERNGESGDTF 964 (1227)
T ss_pred hhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEecCCCCceeeccCCcccccccchhhhhh
Confidence 10 000000000
Q ss_pred ----------------------ccCCC------------CCcc-------ccc----cCC------------CCcEEEEE
Q 042999 601 ----------------------HVCSD------------FRPT-------AKQ----LWK------------PPVGILEL 623 (1006)
Q Consensus 601 ----------------------~~~~~------------~~p~-------~~~----l~~------------~~~g~L~v 623 (1006)
..++. .+|. ++. .|. .+.|-|+|
T Consensus 965 ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~~v~~~~tPv~~~l~~~emv~nsG~l~I 1044 (1227)
T COG5038 965 IRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTI 1044 (1227)
T ss_pred hhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceEEEEEEEeecccccCcceeecccCcEEE
Confidence 00000 0000 000 000 24789999
Q ss_pred EEeeccCCccCccCCCCCCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCCCCcCCCC
Q 042999 624 GILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWRMFADASE 701 (1006)
Q Consensus 624 ~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~~~~ 701 (1006)
.+..|.||++.| . +|.+||||++.++++ .++|+++++|+||+|||++.++|.. ..+.++|.|+|||...
T Consensus 1045 ~~~~~~nl~~~d---~-ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~----- 1115 (1227)
T COG5038 1045 MLRSGENLPSSD---E-NGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGE----- 1115 (1227)
T ss_pred EEeccCCCcccc---c-CCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccCC-----
Confidence 999999999855 4 899999999999877 7899999999999999999999985 6679999999999866
Q ss_pred CCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecCC
Q 042999 702 ERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPS 754 (1006)
Q Consensus 702 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~~ 754 (1006)
+++.||.+.|+|+.+..+..+....+|.++. .+ ...|.++..+.|....
T Consensus 1116 --knd~lg~~~idL~~l~~~~~~n~~i~ldgk~-~~-~~~g~~~~~~~~r~~~ 1164 (1227)
T COG5038 1116 --KNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT-FI-VLDGTLHPGFNFRSKY 1164 (1227)
T ss_pred --CccccccccccHhhcCcCCccceeeeccCcc-eE-ecccEeecceecchhh
Confidence 8999999999999999999888888886643 22 2358888888776543
|
|
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=268.08 Aligned_cols=131 Identities=64% Similarity=1.142 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHhhhccccCCCCCCCCCCccccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 042999 876 VPTGFLYVVLIGVWYYRFRPKIPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFAT 955 (1006)
Q Consensus 876 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~ 955 (1006)
+|+++++++++++|||+++++.|+|+|.++|+++++++||+|||+|++|++++++++++||+++|+++++|||++|++|+
T Consensus 1 lp~~~l~~~~~~~w~yr~rpr~p~~~d~~ls~~~~~~~deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~vlgd~At 80 (156)
T PF08372_consen 1 LPTVFLYLFLIGLWNYRFRPRHPPHMDTKLSHADSAHPDELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQNVLGDVAT 80 (156)
T ss_pred CchHHHHHHHHHHhccccCCCCCCCCCccccccccCCcchhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhHhhhccccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhccCC
Q 042999 956 QGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALGFYYLRHP 1006 (1006)
Q Consensus 956 ~~e~i~~~~~w~~p~~t~~~~~~l~~~~~~l~~iP~r~i~l~~~~~~~~hP 1006 (1006)
++||++|+|+|+||++|++++++|+++++++|++|+|+++++||+|+||||
T Consensus 81 ~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P 131 (156)
T PF08372_consen 81 QGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHP 131 (156)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999998
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-22 Score=231.88 Aligned_cols=390 Identities=18% Similarity=0.240 Sum_probs=278.5
Q ss_pred cceEEEEEEEeeCCCC-------CCCcEEEEEECC-eeeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEE
Q 042999 295 MMYLFVKIRKARGLVP-------NEAPYVKIRTSS-HYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVW 366 (1006)
Q Consensus 295 ~~~l~V~v~~a~~l~~-------~~dpyv~v~~~~-~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~ 366 (1006)
...+.|++.+|++|.. ..|||+.+.+.+ ...+|+++ +++.||+|||+|+.++.... ++|.++||
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~-----~nt~nPvwNEt~Yi~lns~~---d~L~Lsly 506 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVK-----KNTLNPVWNETFYILLNSFT---DPLNLSLY 506 (1227)
T ss_pred eEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCcccee-----eccCCccccceEEEEecccC---CceeEEEE
Confidence 4567899999999864 349999999877 45699999 99999999999999998774 99999999
Q ss_pred cCC---CCCccEEEEEeCCcCCCCCCCCCCCcceeEEcccCCCCCCcceeeEEEEEEE-eecCCCCcCccccCCCCCCcc
Q 042999 367 DSP---TENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNRVSGDIQLAVW-IGTQADEAFPEAWSSDAPYVT 442 (1006)
Q Consensus 367 D~~---~d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~~~g~l~~~~~-~~~~~d~~~~~~~~~~~~~~~ 442 (1006)
|++ +|+.+|++.++|+.+..+....+. -+.+... .+..|+|.+.+. +....+........
T Consensus 507 D~n~~~sd~vvG~~~l~L~~L~~~~~~~ne----~~e~~~~-----~k~vGrL~yDl~ffp~~e~k~~~~~s~------- 570 (1227)
T COG5038 507 DFNSFKSDKVVGSTQLDLALLHQNPVKKNE----LYEFLRN-----TKNVGRLTYDLRFFPVIEDKKELKGSV------- 570 (1227)
T ss_pred eccccCCcceeeeEEechHHhhhccccccc----eeeeecc-----CccceEEEEeeeeecccCCcccccccc-------
Confidence 965 599999999999988876322222 2233222 235577766553 22222211110000
Q ss_pred ccccccccCCceEEEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC-ccceeeeeecCCCCCCceecceeeeeeccCCC
Q 042999 443 HTRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL-QSARTRRGSMNNHSSSFHWHEDVFFVAAEPFE 521 (1006)
Q Consensus 443 ~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~ 521 (1006)
........+.+.+++.++++|... ......-++++++.. +++.|++.+ .+.+|.||+++.-.+.+-..
T Consensus 571 ----e~~ed~n~GI~k~tl~~~~~l~~~----~~~~~~~~a~l~~~~keV~st~~~k---~t~~~~wn~~~~~~v~~~~n 639 (1227)
T COG5038 571 ----EPLEDSNTGILKVTLREVKALDEL----SSKKDNKSAELYTNAKEVYSTGKLK---FTNHPSWNLQYNVLVTDRKN 639 (1227)
T ss_pred ----CCcccCCcceeEEEeeccccccCc----cccccceeEEEEecceEEeccceee---eccCCceeeecceEeccCcc
Confidence 000111246799999999999842 222223337788865 666667776 89999999999998888878
Q ss_pred CcEEEEEEECCCCccccceeEEEEEeccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeCCccccccccc
Q 042999 522 DSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAH 601 (1006)
Q Consensus 522 ~~L~v~V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~~~~~~d~~~~ 601 (1006)
..+.+.+.|.. . .+.||....+|.++.... .....||++..+ .|+|.+..+...-|...+.
T Consensus 640 s~~~~~~~d~~-~---g~~i~~~~~~l~~li~~t---~dt~~~f~~~~~---------kg~I~~t~~W~Pi~~~~~~--- 700 (1227)
T COG5038 640 SSIKVVTFDVQ-S---GKVIATEGSTLPDLIDRT---LDTFLVFPLRNP---------KGRIFITNYWKPIYNAGGS--- 700 (1227)
T ss_pred eeEEEEecccc-c---CceeccccccchHhhhcc---ccceEEEEcCCC---------cceEEEEeccceeeccccc---
Confidence 88999999975 2 578999999998877543 345679999854 6899888765543321110
Q ss_pred cCCCCCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeecccCCCCCeeccEEEEEEeC
Q 042999 602 VCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDPRWNEQYTWQVYD 680 (1006)
Q Consensus 602 ~~~~~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~~~~nP~wne~~~~~v~~ 680 (1006)
.+......++|.++|.|..|.+|.. ... .|++|||+.+.+++ ..+||-....++||.||+....++..
T Consensus 701 -------~s~~~~~~pIg~irv~v~~andl~n---~i~-g~~~dPya~v~~n~~~k~rti~~~~~~npiw~~i~Yv~v~s 769 (1227)
T COG5038 701 -------SSKTVYDTPIGAIRVSVRKANDLRN---EIP-GGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTS 769 (1227)
T ss_pred -------cceeeecCccceEEEEeehhhcccc---ccc-CcccccceEEEecceeEEEEecccCccccceeeeEEEEecC
Confidence 1112234689999999999999974 345 88999999999986 46799888999999999999999999
Q ss_pred CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccC----CceEeeE---EEeeeeccCCcccccEEEEEEEEecC
Q 042999 681 PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLEN----NKVYTTS---YPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 681 ~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~----~~~~~~~---~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
+.+.+.+.++|....+ .|..||.+.|+++++.. +.....- -........|.+..|++++..+|-+.
T Consensus 770 k~~r~~l~~~~~~~sg-------ddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~ 842 (1227)
T COG5038 770 KNQRLTLECMDYEESG-------DDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA 842 (1227)
T ss_pred CccEEeeeeecchhcc-------ccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee
Confidence 9999999999999888 89999999999998865 2111100 00000111233345999999999875
Q ss_pred CCC
Q 042999 754 SML 756 (1006)
Q Consensus 754 ~~~ 756 (1006)
.+.
T Consensus 843 ~i~ 845 (1227)
T COG5038 843 VIV 845 (1227)
T ss_pred ccc
Confidence 433
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=229.82 Aligned_cols=211 Identities=29% Similarity=0.424 Sum_probs=171.2
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
...|.|+|++|++|+.++..|.+||||++++. ..+.+|++.++|+||+|||+|.|.+... .+....|.+.|||+|+
T Consensus 166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~-~l~~~~L~l~V~~~dr 244 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYE-ELSNRVLHLSVYDFDR 244 (421)
T ss_pred CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHH-HhccCEEEEEEEecCC
Confidence 45799999999999999977889999999995 4679999999999999999999997663 3448899999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCce-eeeEEEEEEEEEEecCcccccCCCCCCCCCCCCCCCC
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFS-WIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPPQPP 170 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (1006)
+ +++++||++.+++..+ ........|.+|....... ...|+|.+.++|.+...
T Consensus 245 f-----sr~~~iGev~~~l~~~-~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g-------------------- 298 (421)
T KOG1028|consen 245 F-----SRHDFIGEVILPLGEV-DLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAG-------------------- 298 (421)
T ss_pred c-----ccccEEEEEEecCccc-cccccceeeeccccccCCcccccceEEEEEEeecCCC--------------------
Confidence 9 8999999999998885 4444466899998754332 22379999999987641
Q ss_pred CCCCCcccccCCcccccCCCCccccCCCCccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcc
Q 042999 171 QQQPGVCVVEEGRVFEVPGGHVEVCHPVPEIYHGQPPPQAPIIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIRKMQ 250 (1006)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 250 (1006)
T Consensus 299 -------------------------------------------------------------------------------- 298 (421)
T KOG1028|consen 299 -------------------------------------------------------------------------------- 298 (421)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccccccceEEEEEEEeeCCCC-----CCCcEEEEEECC---
Q 042999 251 SGCAERVNVLKRPNGDYSPKVINSSKPNGEVPTERIHPYDLVEPMMYLFVKIRKARGLVP-----NEAPYVKIRTSS--- 322 (1006)
Q Consensus 251 ~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~l~V~v~~a~~l~~-----~~dpyv~v~~~~--- 322 (1006)
.|.|.|++|++|.. .+||||++.+-.
T Consensus 299 ----------------------------------------------~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~ 332 (421)
T KOG1028|consen 299 ----------------------------------------------RLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDK 332 (421)
T ss_pred ----------------------------------------------eEEEEEEEecCCCcccCCCCCCccEEEEEecCCc
Confidence 04478889999874 459999999753
Q ss_pred --eeeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEEcCCC---CCccEEEEEeCCc
Q 042999 323 --HYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSPT---ENFLGGVCFDLSD 383 (1006)
Q Consensus 323 --~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~D~~~---d~~lG~~~i~l~~ 383 (1006)
.+.+|.+. +++.||+|||+|.|.+.........|.|+|||+++ +++||.+.+....
T Consensus 333 ~~~kkkT~~~-----~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 333 RLSKKKTSVK-----KKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred eeeeeeeecc-----cCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 34566666 99999999999999766433226789999999883 7799999887654
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=227.86 Aligned_cols=216 Identities=22% Similarity=0.281 Sum_probs=172.8
Q ss_pred ceEEEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC---ccceeeeeecCCCCCCceecceeeeeeccC--CCCcEEEE
Q 042999 453 KLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL---QSARTRRGSMNNHSSSFHWHEDVFFVAAEP--FEDSLILL 527 (1006)
Q Consensus 453 ~~~~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~---~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~--~~~~L~v~ 527 (1006)
+...|.|+|++|+||+.+ |..|.+||||++++.. .+.+|++.+ +++||.|||.|.|.|... ....|.+.
T Consensus 165 ~~~~L~V~V~qa~~Lp~~---d~~g~sdpyVK~~llPdk~~k~kT~v~r---~tlnP~fnEtf~f~v~~~~l~~~~L~l~ 238 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAK---DRGGTSDPYVKVYLLPDKKGKFKTRVHR---KTLNPVFNETFRFEVPYEELSNRVLHLS 238 (421)
T ss_pred cCCEEEEEEEEecCCCcc---cCCCCCCCeeEEEEcCCCCCcceeeeee---cCcCCccccceEeecCHHHhccCEEEEE
Confidence 345699999999999988 6667899999999964 556787764 999999999999986533 35589999
Q ss_pred EEECCCCccccceeEEEEEeccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeCCccccccccccCCCCC
Q 042999 528 VEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFR 607 (1006)
Q Consensus 528 V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~ 607 (1006)
|||.|..+ ++++||++.++|..+... .....|..|....... ....|+|.+.++...
T Consensus 239 V~~~drfs-r~~~iGev~~~l~~~~~~----~~~~~w~~l~~~~~~~--~~~~gel~~sL~Y~p---------------- 295 (421)
T KOG1028|consen 239 VYDFDRFS-RHDFIGEVILPLGEVDLL----STTLFWKDLQPSSTDS--EELAGELLLSLCYLP---------------- 295 (421)
T ss_pred EEecCCcc-cccEEEEEEecCcccccc----ccceeeeccccccCCc--ccccceEEEEEEeec----------------
Confidence 99999854 599999999999888753 1245699988754321 112289998876442
Q ss_pred ccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE--CC---EEEEeecccCCCCCeeccEEEEEEeC--
Q 042999 608 PTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY--GK---KWVRTRTITDCFDPRWNEQYTWQVYD-- 680 (1006)
Q Consensus 608 p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~--~~---~~~rT~~~~~~~nP~wne~~~~~v~~-- 680 (1006)
..|.|+|.|++|++|+.++. .+.+||||++.+ +. ++.+|.+.++++||+|||+|.|.|..
T Consensus 296 ---------~~g~ltv~v~kar~L~~~~~----~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~ 362 (421)
T KOG1028|consen 296 ---------TAGRLTVVVIKARNLKSMDV----GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQ 362 (421)
T ss_pred ---------CCCeEEEEEEEecCCCcccC----CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHH
Confidence 35899999999999998764 788999999987 32 35688899999999999999998864
Q ss_pred -CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccc
Q 042999 681 -PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVST 717 (1006)
Q Consensus 681 -~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~ 717 (1006)
....|.|+|||+|.++ .+++||.+.+....
T Consensus 363 l~~~~l~l~V~d~d~~~-------~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 363 LAEVSLELTVWDHDTLG-------SNDLIGRCILGSDS 393 (421)
T ss_pred hheeEEEEEEEEccccc-------ccceeeEEEecCCC
Confidence 3347999999999998 77899988887664
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=225.31 Aligned_cols=250 Identities=20% Similarity=0.291 Sum_probs=198.0
Q ss_pred EEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC-ccceeeeeecCCCCCCceecceeeeeeccCCCCcEEEEEEECCCC
Q 042999 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL-QSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAK 534 (1006)
Q Consensus 456 ~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~-~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~ 534 (1006)
.|.|.|.+|+||++. +..|..||||.|.+.+ .++||.++. +++.|.|.|+|.|.+...+. .|.|.|||.|..
T Consensus 6 sl~vki~E~knL~~~---~~~g~~D~yC~v~lD~E~v~RT~tv~---ksL~PF~gEe~~~~iP~~F~-~l~fYv~D~d~~ 78 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSY---GPSGMRDCYCTVNLDQEEVCRTATVE---KSLCPFFGEEFYFEIPRTFR-YLSFYVWDRDLK 78 (800)
T ss_pred ceeEEEeecccCCCC---CCCCCcCcceEEeecchhhhhhhhhh---hhcCCccccceEEecCccee-eEEEEEeccccc
Confidence 489999999999987 8899999999999976 788999876 99999999999999886664 699999999955
Q ss_pred ccccceeEEEEEeccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeCCccccccccccCCCCCccccccC
Q 042999 535 DAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLW 614 (1006)
Q Consensus 535 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~ 614 (1006)
. |++||.+.|.-.+|...+ ....||.|...+. +.+.+|++++.+.+...-. .
T Consensus 79 ~--D~~IGKvai~re~l~~~~----~~d~W~~L~~VD~---dsEVQG~v~l~l~~~e~~~---~---------------- 130 (800)
T KOG2059|consen 79 R--DDIIGKVAIKREDLHMYP----GKDTWFSLQPVDP---DSEVQGKVHLELALTEAIQ---S---------------- 130 (800)
T ss_pred c--ccccceeeeeHHHHhhCC----CCccceeccccCC---ChhhceeEEEEEEeccccC---C----------------
Confidence 5 999999999988887643 3567999998765 6788999999998764221 0
Q ss_pred CCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEE----EEeecccCCCCCeeccEEEEEEeCC---------
Q 042999 615 KPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW----VRTRTITDCFDPRWNEQYTWQVYDP--------- 681 (1006)
Q Consensus 615 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~----~rT~~~~~~~nP~wne~~~~~v~~~--------- 681 (1006)
..+.-.++.++.+.|.+ +|.+||||.+...+.+ .+|++.++|.+|.|+|.|.|.+...
T Consensus 131 ----~~~~c~~L~~r~~~P~~-----~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~ 201 (800)
T KOG2059|consen 131 ----SGLVCHVLKTRQGLPII-----NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLF 201 (800)
T ss_pred ----CcchhhhhhhcccCcee-----CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhc
Confidence 01222344455555543 5669999999986544 4999999999999999999998543
Q ss_pred -------CcEEEEEEEEC-CCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCC-c---ccccEEEEEEE
Q 042999 682 -------CTVLTVGVFDN-WRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTG-L---KKMGEIELAVR 749 (1006)
Q Consensus 682 -------~~~l~i~v~d~-~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-~---~~~G~l~l~~~ 749 (1006)
...|.+++|++ +... .++|+|++++++..+........||-|....... . ...|.+++.++
T Consensus 202 ~~~~e~~~l~irv~lW~~~~~~~-------~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~ 274 (800)
T KOG2059|consen 202 MPEEEDDMLEIRVDLWNDLNLVI-------NDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVT 274 (800)
T ss_pred CcccCCceeeEEEeeccchhhhh-------hhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEE
Confidence 23789999994 4433 6999999999999887666668999998764311 1 12399999999
Q ss_pred EecCCCC
Q 042999 750 FVCPSML 756 (1006)
Q Consensus 750 ~~~~~~~ 756 (1006)
|+.+.++
T Consensus 275 y~~D~Vl 281 (800)
T KOG2059|consen 275 YTEDHVL 281 (800)
T ss_pred eeeceec
Confidence 9988766
|
|
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-22 Score=185.83 Aligned_cols=125 Identities=66% Similarity=1.139 Sum_probs=106.7
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADA 699 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 699 (1006)
.|+|+|++|+||+.+...|. .|++||||+|++|++++||+++++++||+|||+|.|++.++...|+|+|||++..+ .+
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~-~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~-~~ 78 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDG-RGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSH-WK 78 (126)
T ss_pred CeEEEEEEeECCcccccccc-CCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcc-cc
Confidence 38999999999433333566 89999999999999999999999999999999999999998889999999998762 00
Q ss_pred CCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEE
Q 042999 700 SEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIEL 746 (1006)
Q Consensus 700 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l 746 (1006)
....+|++||++.|+|+.+..+..+..||+|.+.+.++.++.|+|++
T Consensus 79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 00116999999999999999998889999999887777778899986
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=181.29 Aligned_cols=119 Identities=24% Similarity=0.379 Sum_probs=104.0
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccC-CCCCeeccEEEEEEeCCCcEEEEEEEECCCCC
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITD-CFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMF 696 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~-~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~ 696 (1006)
.|.|+|+|++|++|+.. . .|++||||+|.+|++.+||+++.+ +.||+|||+|.|++.+....|.|+|||+|.++
T Consensus 1 ~g~L~v~v~~Ak~l~~~----~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~ 75 (121)
T cd04016 1 VGRLSITVVQAKLVKNY----G-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFT 75 (121)
T ss_pred CcEEEEEEEEccCCCcC----C-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCc
Confidence 48999999999988643 2 579999999999999999999876 79999999999999877778999999999987
Q ss_pred cCCCCCCCCceeEEEEEEcc-cccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 697 ADASEERPDYRIGKIRIRVS-TLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
+|++||.+.|++. .+..++..+.||+|.... |..+.|+|+|.++|
T Consensus 76 -------~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~--~~~~~g~i~l~l~y 121 (121)
T cd04016 76 -------MDERIAWTHITIPESVFNGETLDDWYSLSGKQ--GEDKEGMINLVFSY 121 (121)
T ss_pred -------CCceEEEEEEECchhccCCCCccccEeCcCcc--CCCCceEEEEEEeC
Confidence 8999999999996 577888789999997643 33456999999986
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=188.93 Aligned_cols=147 Identities=52% Similarity=0.867 Sum_probs=125.3
Q ss_pred EEEEEEEEeecCcccCCCCCCCCCCcEEEEEECCccceeeeeecCCCCCCceecceeeeeeccCCCCcEEEEEEECCCCc
Q 042999 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKD 535 (1006)
Q Consensus 456 ~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~~ 535 (1006)
+|+|+|++|+||+.+ +.+|.+||||++.+|++.++|+++. ++++||.|||.|.|.+.++..+.|.|.|+|++..+
T Consensus 1 ~L~V~Vi~A~~L~~~---d~~g~sDPYV~v~l~~~~~kTk~~~--~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~ 75 (150)
T cd04019 1 YLRVTVIEAQDLVPS---DKNRVPEVFVKAQLGNQVLRTRPSQ--TRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN 75 (150)
T ss_pred CEEEEEEEeECCCCC---CCCCCCCeEEEEEECCEEeeeEecc--CCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC
Confidence 389999999999987 7788999999999999999999864 23799999999999998877788999999998753
Q ss_pred cccceeEEEEEeccccccccccCcccceEEeCcCCCC---CCCccceeeeEEEEEeeeCCccccccccccCCCCCc
Q 042999 536 AAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCG---RGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRP 608 (1006)
Q Consensus 536 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~---~~~~~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p 608 (1006)
++++||++.++|+++....+.+....+||+|....+ .++..+.+|+|+|+++|.++|++.++..++++|++|
T Consensus 76 -~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~~~~ 150 (150)
T cd04019 76 -KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSDLRP 150 (150)
T ss_pred -CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccCCCC
Confidence 489999999999998754333455789999998754 123456789999999999999999999999998775
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=216.01 Aligned_cols=402 Identities=19% Similarity=0.198 Sum_probs=231.8
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEe---eCCC---CCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIV---SDPK---NMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~---~~~~---~~~~~~L~i~V~ 87 (1006)
....++++|..|+.|...+..+.+|||+.+.+.++.+.|.++.+|+||.|+++..|.- .... ...-..+.++||
T Consensus 204 ~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~y 283 (1105)
T KOG1326|consen 204 IHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVY 283 (1105)
T ss_pred hhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEee
Confidence 3456778899999999999899999999999999999999999999999999999862 1110 011245789999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecCcccccCCCCCCCCCCCCC
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPP 167 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (1006)
|.++. +.++|+|+..+...-++. .....|+++...+.. .|++.+....+.... +
T Consensus 284 d~dr~-----g~~ef~gr~~~~p~V~~~--~p~lkw~p~~rg~~l---~gd~l~a~eliq~~~------~---------- 337 (1105)
T KOG1326|consen 284 DLDRS-----GINEFKGRKKQRPYVMVQ--CPALKWVPTMRGAFL---DGDVLIAAELIQIGK------P---------- 337 (1105)
T ss_pred hhhhh-----chHHhhcccccceEEEec--CCccceEEeeccccc---ccchhHHHHHHhhcC------C----------
Confidence 99999 899999999887665433 334568888754321 233332222211110 0
Q ss_pred CCCCCCCCcccccCCcccccCCCCccccCCCCccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhh
Q 042999 168 QPPQQQPGVCVVEEGRVFEVPGGHVEVCHPVPEIYHGQPPPQAPIIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIR 247 (1006)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 247 (1006)
.+.|+.. +.
T Consensus 338 -----------------------------------i~~p~~~-------------------------~~----------- 346 (1105)
T KOG1326|consen 338 -----------------------------------IPQPPPQ-------------------------RE----------- 346 (1105)
T ss_pred -----------------------------------CCCCCcc-------------------------cc-----------
Confidence 0000000 00
Q ss_pred hcccccccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccccccceEEEEEEEeeCCCCCCCcEEEEEECCeeeee
Q 042999 248 KMQSGCAERVNVLKRPNGDYSPKVINSSKPNGEVPTERIHPYDLVEPMMYLFVKIRKARGLVPNEAPYVKIRTSSHYKKS 327 (1006)
Q Consensus 248 ~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~l~V~v~~a~~l~~~~dpyv~v~~~~~~~~T 327 (1006)
..+... .+.|.|.+-.+. -.+. . -.++..+..++.....|-+-+.+|++..+|
T Consensus 347 ---------~~~~~v------p~~iRp~~q~~~--------~evl---~-wgLrn~k~~~m~~~~~P~~~~e~g~e~v~s 399 (1105)
T KOG1326|consen 347 ---------IIFSLV------PKKIRPKTQIGK--------AELL---M-WGLRNPKKSGMASTFSPALLVEFGGERVSS 399 (1105)
T ss_pred ---------cceecc------ccCCCcceeeee--------eehh---h-hhhcccccccccccCCcceeEeeCCceEee
Confidence 000000 011111111110 0000 0 012223333444566899999999988777
Q ss_pred eEeeccCCCCCCCCeeceEEEEeccC-CC--CCCCEEEEEEEcCC---CCCccEEEEEeCCcCCCCCCCC-CCCc-----
Q 042999 328 KLASYRACDPHDSPEWNQVFALFHNK-ND--SVSATLEITVWDSP---TENFLGGVCFDLSDVPVRDPPD-SPLA----- 395 (1006)
Q Consensus 328 ~~~~~~~~~~~~nP~wne~f~f~~~~-~~--~~~~~l~i~V~D~~---~d~~lG~~~i~l~~l~~~~~~~-~~~~----- 395 (1006)
-.+. ....||.++..|.+.... +. .-..++.++|+|.+ ....+|.|.+.--.=....|.. ....
T Consensus 400 ~~I~----~~k~npnf~s~~~~~~v~lpd~e~Y~ppl~akvvd~~~fg~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~ 475 (1105)
T KOG1326|consen 400 FSIF----NRKKNPNFPSRVLGRLVILPDEELYMPPLNAKVVDLRQFGRMEVVGQCKILSLYNFFCDPSAVNSITPQFAS 475 (1105)
T ss_pred eeeh----hhhhCCCCceeEEEEEEeccchHhhCccceeEEEecccccceeehhhhcchhhhhhccCchhhcccCcCCCC
Confidence 7772 455677777766553222 21 13578999999965 4788898877422111111100 0000
Q ss_pred ------------------ceeEEcccCCC------------CCC--cceee-------EEEEEEEeecCCCC---cCc--
Q 042999 396 ------------------PQWYRLEGEAS------------DQN--NRVSG-------DIQLAVWIGTQADE---AFP-- 431 (1006)
Q Consensus 396 ------------------~~w~~L~~~~~------------~~~--~~~~g-------~l~~~~~~~~~~d~---~~~-- 431 (1006)
..|+....... ... ....+ ...+.++ ...+| +|.
T Consensus 476 d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiy--n~ele~v~ef~~l 553 (1105)
T KOG1326|consen 476 DPVSIMMGSTDNEIRHCNSSTLPASPHEDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIY--NMELEMVAEFRGL 553 (1105)
T ss_pred CchhhhcCCchhhhhhccccCCCCCccccccceehhhhhhccccccccccccccccccceEEEEe--hhhhhhHHHHhhh
Confidence 00111110000 000 00000 0011110 00000 000
Q ss_pred cccCC--------------CCC--Cccccccccc--------------------cCCceEEEEEEEEEeecCcccCCCCC
Q 042999 432 EAWSS--------------DAP--YVTHTRSKVY--------------------QSPKLWYLRVTVMEAQDLCIAHNLPP 475 (1006)
Q Consensus 432 ~~~~~--------------~~~--~~~~~~~~~~--------------------~~p~~~~L~V~v~~a~~L~~~~~~d~ 475 (1006)
+.|.. +.. +....+.++| ..|....++|+|++|-+|.+. |.
T Consensus 554 ~D~~~~f~l~rG~~~~e~~e~~Ivg~fKgl~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~ 630 (1105)
T KOG1326|consen 554 QDWAVTFKLYRGKEGLECLEQQIVGEFKGLFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DG 630 (1105)
T ss_pred hhccceeEeeeccccCCCcccchhhhhhcceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CC
Confidence 00000 000 0000000000 125556699999999999998 89
Q ss_pred CCCCCcEEEEEECCccceeeeeecCCCCCCceecceeeeeeccCCCCcEEEEEEECCCCccccceeEEEEEeccc
Q 042999 476 LTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSS 550 (1006)
Q Consensus 476 ~~~~dpyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~~~~d~~lG~~~i~l~~ 550 (1006)
+|++||||++.+|++....+.- .+.+|+||+|++.|++....+....|.+.|||+|..+ .|+.||+..++|..
T Consensus 631 ng~adpYv~l~lGk~~~~d~~~-yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~-~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 631 NGDADPYVKLLLGKKRTLDRAH-YIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA-QDEKIGETTIDLEN 703 (1105)
T ss_pred CCCcCceeeeeeccchhhhhhh-cCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc-ccchhhceehhhhh
Confidence 9999999999999876544443 3459999999999999999999999999999999644 59999999999876
|
|
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-21 Score=179.40 Aligned_cols=116 Identities=31% Similarity=0.489 Sum_probs=100.9
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCC
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMF 696 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~ 696 (1006)
.+|.|+|.|++|.||... |. .++|||||++.+|+++.||+++++++||+|||.|+|.|.++...|+++|||+|.++
T Consensus 4 ~vGLL~v~v~~g~~L~~r---D~-~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs 79 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIR---DF-LGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFS 79 (168)
T ss_pred cceEEEEEEEeecCeeee---cc-ccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCC
Confidence 589999999999999874 44 68999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEE
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELA 747 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~ 747 (1006)
+||+||.++|+|..+.... ..+| |....+.|... |++.++
T Consensus 80 -------~dD~mG~A~I~l~p~~~~~--~~~~-l~~~~~~gt~~-~~v~~s 119 (168)
T KOG1030|consen 80 -------SDDFMGEATIPLKPLLEAQ--KMDY-LKLELLTGTAI-GKVLLS 119 (168)
T ss_pred -------cccccceeeeccHHHHHHh--hhhc-cccccCCCcEe-eEEEec
Confidence 8999999999999998776 4566 65555555433 655553
|
|
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-20 Score=170.14 Aligned_cols=120 Identities=18% Similarity=0.307 Sum_probs=102.5
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCC-CCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFR-DLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
.|.|.|+|++|++|+..+ .|++||||++.+++++++|+++.+ +.||+|||+|.|.+... ...|.|+|||+|.+
T Consensus 1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~----~~~l~~~V~d~d~~- 74 (121)
T cd04016 1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG----VDSIYIEIFDERAF- 74 (121)
T ss_pred CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC----CcEEEEEEEeCCCC-
Confidence 368999999999988777 789999999999999999999875 89999999999998764 35799999999999
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
++|++||.+.+++...+..+.....|++|.+... ....|+|+|+++|
T Consensus 75 ----~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~-~~~~g~i~l~l~y 121 (121)
T cd04016 75 ----TMDERIAWTHITIPESVFNGETLDDWYSLSGKQG-EDKEGMINLVFSY 121 (121)
T ss_pred ----cCCceEEEEEEECchhccCCCCccccEeCcCccC-CCCceEEEEEEeC
Confidence 7899999999999643456666789999986432 2357999999986
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.2e-20 Score=179.49 Aligned_cols=125 Identities=25% Similarity=0.280 Sum_probs=109.8
Q ss_pred cEEEEEEEeeccCCccCccC---------------------------CCCCCCCCeEEEEEECCEE-EEeecccCCCCCe
Q 042999 618 VGILELGILGARGLLPMKTK---------------------------NGGKGSTDAYCVAKYGKKW-VRTRTITDCFDPR 669 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~---------------------------d~~~g~sdpyv~v~~~~~~-~rT~~~~~~~nP~ 669 (1006)
-|.|.|+|++|++|++||.. .. .|++||||+|.+++.. .||++++++.||+
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~ 84 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVG-KITSDPYATVDLAGARVARTRVIENSENPV 84 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCC-CCCcCeEEEEEECCeEeeEEEEeCCCCCCc
Confidence 48999999999999998731 23 7889999999999765 5999999999999
Q ss_pred eccEEEEEEeCCCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEE
Q 042999 670 WNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVR 749 (1006)
Q Consensus 670 wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~ 749 (1006)
|||+|.|++.++.+.|+|.|||+|.++ +++||++.|++.++..+...+.||+|.+...++.+..|+|+|+++
T Consensus 85 WnE~F~~~~~~~~~~l~~~V~d~d~~~--------~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~ 156 (158)
T cd04015 85 WNESFHIYCAHYASHVEFTVKDNDVVG--------AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQ 156 (158)
T ss_pred cceEEEEEccCCCCEEEEEEEeCCCcC--------CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEE
Confidence 999999999888889999999999865 679999999999999888889999998765566556699999999
Q ss_pred Ee
Q 042999 750 FV 751 (1006)
Q Consensus 750 ~~ 751 (1006)
|+
T Consensus 157 f~ 158 (158)
T cd04015 157 FT 158 (158)
T ss_pred EC
Confidence 84
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-20 Score=174.88 Aligned_cols=118 Identities=25% Similarity=0.376 Sum_probs=101.4
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeC------CCcEEEEEEEECCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD------PCTVLTVGVFDNWR 694 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~------~~~~l~i~v~d~~~ 694 (1006)
++|+|++|+||++++ . .|.+||||++.++++..||+++++++||+|||.|.|.+.. ....|.|.|||++.
T Consensus 1 ~~V~V~~A~~L~~~d---~-~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCKG---K-SGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCCC---C-CcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 579999999998854 4 7889999999999999999999999999999999999977 45689999999998
Q ss_pred CCcCCCCCCCCceeEEEEEEccccc--CCceEeeEEEeeeeccCCcccccEEEEEEE
Q 042999 695 MFADASEERPDYRIGKIRIRVSTLE--NNKVYTTSYPLLVLLRTGLKKMGEIELAVR 749 (1006)
Q Consensus 695 ~~~~~~~~~~d~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~ 749 (1006)
++ +|++||++.|+|+++. .+.....||+|........+..|+|+|+++
T Consensus 77 ~~-------~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 77 LG-------LDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred cC-------CCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 87 7999999999999987 566678999998654333334599999863
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=200.76 Aligned_cols=124 Identities=19% Similarity=0.308 Sum_probs=110.0
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCe-EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQ-RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
...|.|.|.+|+||++++..|++||||.|.++++ ..||.++.+++.|.|.|.|.|.+... -+.|.|.|||.| +
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~----F~~l~fYv~D~d-~- 77 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRT----FRYLSFYVWDRD-L- 77 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcc----eeeEEEEEeccc-c-
Confidence 4578999999999999999999999999999864 59999999999999999999998875 678999999999 7
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
++|+.||.+.+.-.+|.. ....+.||.|..-...+.++|+|++++.+.+..
T Consensus 78 ----~~D~~IGKvai~re~l~~-~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~ 128 (800)
T KOG2059|consen 78 ----KRDDIIGKVAIKREDLHM-YPGKDTWFSLQPVDPDSEVQGKVHLELALTEAI 128 (800)
T ss_pred ----ccccccceeeeeHHHHhh-CCCCccceeccccCCChhhceeEEEEEEecccc
Confidence 799999999999888633 335678999998887889999999999988765
|
|
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-19 Score=174.94 Aligned_cols=136 Identities=21% Similarity=0.274 Sum_probs=110.2
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccC-CCCCeeccEEEEEEeCCC-cEEEEEEEECCCCCc
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITD-CFDPRWNEQYTWQVYDPC-TVLTVGVFDNWRMFA 697 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~-~~nP~wne~~~~~v~~~~-~~l~i~v~d~~~~~~ 697 (1006)
.|+|+|++|++|++++ . +|++||||++.++++..||+++.+ ++||+|||.|.|.+.++. +.|.|.|||++..+
T Consensus 1 ~L~V~Vi~A~~L~~~d---~-~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~- 75 (150)
T cd04019 1 YLRVTVIEAQDLVPSD---K-NRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPN- 75 (150)
T ss_pred CEEEEEEEeECCCCCC---C-CCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCC-
Confidence 3899999999999865 4 789999999999999999999977 699999999999998754 58999999999876
Q ss_pred CCCCCCCCceeEEEEEEcccccCC----ceEeeEEEeeeecc-----CCcccccEEEEEEEEecCCCCcccccccCCC
Q 042999 698 DASEERPDYRIGKIRIRVSTLENN----KVYTTSYPLLVLLR-----TGLKKMGEIELAVRFVCPSMLPETSSVYGQP 766 (1006)
Q Consensus 698 ~~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~-----~g~~~~G~l~l~~~~~~~~~~~~~~~~~~~p 766 (1006)
+|++||++.|+|+++..+ .....||+|..... +..+..|+|+|.+.|............|...
T Consensus 76 ------~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~~~~~~~~~~ 147 (150)
T cd04019 76 ------KDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVLDESTHYSSD 147 (150)
T ss_pred ------CCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEeecccccccC
Confidence 789999999999998643 44589999987532 2234459999999999876543333344433
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-19 Score=169.40 Aligned_cols=120 Identities=28% Similarity=0.379 Sum_probs=106.4
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 698 (1006)
.|+|+|++|+||++++ . .|.+||||++.+++ ...||+++.+++||.|||.|.|.+.++...|.|+|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~d---~-~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~-- 74 (121)
T cd04042 1 QLDIHLKEGRNLAARD---R-GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGL-- 74 (121)
T ss_pred CeEEEEEEeeCCCCcC---C-CCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCC--
Confidence 3799999999998864 4 78999999999987 678999999999999999999999887889999999999986
Q ss_pred CCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
+|++||.+.+++.++..+...+.|++|.+... .+..|+|+|+++|++
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 -----TDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS--DEDLGYISLVVTLTP 121 (121)
T ss_pred -----CCcceEEEEEEHHHcCCCCCeEEEEECCCCCC--ccCceEEEEEEEECC
Confidence 79999999999999998888899999976432 345699999999974
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-19 Score=172.14 Aligned_cols=125 Identities=58% Similarity=0.951 Sum_probs=109.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
.|.|+|++|++|.+++..|.+||||++.+++++++|++++++.||+|||.|.|.+..........|.|+|||++.+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~---- 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS---- 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC----
Confidence 4899999999999999889999999999999999999999999999999999998764333346899999999987
Q ss_pred CC-CCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 97 GR-KNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 97 ~~-~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
+ ++++||++.++++++...+....+||+|++.+..++.+|+|.|++.+.
T Consensus 77 -~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 77 -GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred -cCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 5 799999999999997645566679999998766666799999999875
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=163.96 Aligned_cols=119 Identities=23% Similarity=0.359 Sum_probs=102.9
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADA 699 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 699 (1006)
|.|.|++|+||++++ +. .|.+||||.|.++++ ..+|+++++|+||.|||+|.|++.+....|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~--~~-~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~--- 75 (121)
T cd08401 2 LKIKIGEAKNLPPRS--GP-NKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLR--- 75 (121)
T ss_pred eEEEEEEccCCCCCC--CC-CCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCC---
Confidence 689999999999864 23 678999999999865 57999999999999999999999876679999999999887
Q ss_pred CCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 700 SEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 700 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
+|++||++.++++++..+...+.||+|......+. ..|+|+|+++|
T Consensus 76 ----~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-~~G~i~l~~~~ 121 (121)
T cd08401 76 ----RDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-VQGKVHLELRL 121 (121)
T ss_pred ----CCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-ccEEEEEEEEC
Confidence 89999999999999988877899999986544332 35999999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=164.38 Aligned_cols=120 Identities=23% Similarity=0.380 Sum_probs=102.2
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEE-EEeecccCCCCCeeccEEEEEEeCCC-cEEEEEEEECCCC
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW-VRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVGVFDNWRM 695 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~-~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~v~d~~~~ 695 (1006)
...|+|+|++|+||++ .+.+||||.|.+++.. .||++ +++.||.|||.|.|++..+. ..++|.|||++..
T Consensus 3 ~~~L~V~Vi~A~~L~~-------~~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~ 74 (126)
T cd08400 3 VRSLQLNVLEAHKLPV-------KHVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKR 74 (126)
T ss_pred eeEEEEEEEEeeCCCC-------CCCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCC
Confidence 4579999999999976 3468999999998754 68887 56899999999999976654 5799999999987
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 696 FADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
+ +|++||++.|+|.++..+...+.||+|......+.+..|+|+|+++|..
T Consensus 75 ~-------~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 75 S-------KDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred C-------CCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 6 8999999999999999988889999998765434445699999999975
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.2e-19 Score=166.80 Aligned_cols=122 Identities=30% Similarity=0.437 Sum_probs=103.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCC--CCCCCceEEEEEEeCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDP--KNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~--~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
++|+|++|+||+.++..|.+||||++.+++++++|+++++++||+|||+|.|.+... .......|.|+|||++.+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~--- 77 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL--- 77 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc---
Confidence 579999999999999889999999999999999999999999999999999998762 112256899999999998
Q ss_pred CCCCCceeEEEEEeCeeeee-eCCceeEEEEceecC-CceeeeEEEEEEEE
Q 042999 96 SGRKNHFLGRVKLCGSQFAR-RGDEGLVYFPLEKKS-VFSWIRGEIGLRIY 144 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~-~~~~~~~w~~L~~~~-~~~~~~G~i~l~~~ 144 (1006)
++|++||++.++++++.. .+....+||+|.+.. ...+..|+|+|+++
T Consensus 78 --~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 78 --GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred --CCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 789999999999999752 345566899998533 33456899999873
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-18 Score=163.27 Aligned_cols=119 Identities=28% Similarity=0.476 Sum_probs=102.1
Q ss_pred CCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCC-cEEEEEEEECC
Q 042999 615 KPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVGVFDNW 693 (1006)
Q Consensus 615 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~v~d~~ 693 (1006)
...+|.|+|+|++|+||++++ . .|.+||||++.++++..||+++++++||.|||.|.|.+.++. ..|.|+|||+|
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d---~-~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d 86 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCN---S-NGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRD 86 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCC---C-CCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECC
Confidence 457899999999999998864 4 789999999999999999999999999999999999998754 68999999999
Q ss_pred CCCcCCCCCCCCceeEEEEEEcccccC-----CceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 694 RMFADASEERPDYRIGKIRIRVSTLEN-----NKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 694 ~~~~~~~~~~~d~~lG~~~i~l~~l~~-----~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
.++ +|++||++.|++.++.. ......|.+|. + +..|+|+|++.|
T Consensus 87 ~~~-------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~-~~~g~i~l~~~~ 135 (136)
T cd08375 87 FFS-------PDDFLGRTEIRVADILKETKESKGPITKRLLLH-----E-VPTGEVVVKLDL 135 (136)
T ss_pred CCC-------CCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----c-ccceeEEEEEEe
Confidence 877 89999999999999876 23345666663 2 234999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-18 Score=160.73 Aligned_cols=118 Identities=26% Similarity=0.422 Sum_probs=103.8
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 698 (1006)
|.|+|+|++|+||+.++ . .+.+||||++.+++...+|++++++.||.|||+|.|++.+....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~---~-~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~-- 74 (119)
T cd08377 1 GFLQVKVIRASGLAAAD---I-GGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDK-- 74 (119)
T ss_pred CEEEEEEEeeeCCCCCC---C-CCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCC--
Confidence 78999999999998854 4 77899999999999999999999999999999999999877789999999999876
Q ss_pred CCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
++++||++.+++.++..+. ..||+|......+. ..|+|.+++.|
T Consensus 75 -----~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~ 118 (119)
T cd08377 75 -----KPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRTR-AKGSILLEMDV 118 (119)
T ss_pred -----CCceeeEEEEEHHHCCCCC--ceEEECcccCCCCc-eeeEEEEEEEe
Confidence 7899999999999998776 68999976543332 35999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.9e-18 Score=159.87 Aligned_cols=114 Identities=21% Similarity=0.422 Sum_probs=102.6
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCCcC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~ 698 (1006)
.|+|+|++|+||++++ . .|.+||||+++++++..+|+++.+++||.|||.|.|.+.++ ...|.|+|||++..+
T Consensus 1 ~~~V~v~~a~~L~~~~---~-~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~-- 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMD---D-NGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK-- 74 (116)
T ss_pred CEEEEEEEEECCCCCC---C-CCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC--
Confidence 3789999999998864 4 77899999999999999999999999999999999999876 679999999999876
Q ss_pred CCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
+|++||++.++|.++..+.....||+|.. ..|+|++++.|+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~~ 115 (116)
T cd08376 75 -----KDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTLT 115 (116)
T ss_pred -----CCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEec
Confidence 89999999999999998888899999954 139999998886
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-18 Score=161.82 Aligned_cols=120 Identities=23% Similarity=0.346 Sum_probs=103.5
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--CEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--KKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 698 (1006)
|.|+|++|+||+. . .|.+||||++.++ .+..||+++.+++||+|||.|.|.+......|.|+|||++..+
T Consensus 1 l~v~v~~A~~L~~-----~-~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~-- 72 (126)
T cd08678 1 LLVKNIKANGLSE-----A-AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKS-- 72 (126)
T ss_pred CEEEEEEecCCCC-----C-CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCC--
Confidence 5799999999976 2 7899999999997 4678999999999999999999999766778999999999876
Q ss_pred CCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
+|++||++.|++.++..+.....||+|......+.+..|+|++++.|...
T Consensus 73 -----~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 73 -----DSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEP 122 (126)
T ss_pred -----CCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecc
Confidence 79999999999999988776689999976533233446999999999864
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=163.37 Aligned_cols=121 Identities=31% Similarity=0.472 Sum_probs=102.3
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCC----cEEEEEEEECCCC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPC----TVLTVGVFDNWRM 695 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~----~~l~i~v~d~~~~ 695 (1006)
.|+|+|++|++|++.+ . .|.+||||++.++++..||+++.+++||.|||.|.|.+.++. ..|.|+|||++.+
T Consensus 1 ~L~V~vi~A~~L~~~d---~-~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKD---G-QGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCCC---C-CCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence 3899999999998864 4 788999999999999999999999999999999999998643 4799999999876
Q ss_pred CcCCCCCCCCceeEEEEEEccccc-CCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 696 FADASEERPDYRIGKIRIRVSTLE-NNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
+ .+|++||++.|+++++. .+.....||+|......+ +..|+|+|++.|+
T Consensus 77 ~------~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~~ 126 (127)
T cd04022 77 G------RRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFS-RVRGEIGLKVYIT 126 (127)
T ss_pred c------CCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCC-CccEEEEEEEEEc
Confidence 3 15889999999999987 456668999998643333 2459999999886
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-18 Score=161.98 Aligned_cols=116 Identities=27% Similarity=0.441 Sum_probs=100.1
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccC-CCCCeeccEEEEEEeC-CCcEEEEEEEECCCCC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITD-CFDPRWNEQYTWQVYD-PCTVLTVGVFDNWRMF 696 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~-~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~~~ 696 (1006)
|.|+|+|++|++|++.+ . .|++||||++.+++...||+++.+ ++||+|||.|.|.+.. ....|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~---~-~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKR---K-LDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR- 75 (118)
T ss_pred CEEEEEEEEccCCCCCC---c-CCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC-
Confidence 78999999999998854 4 789999999999999999999865 7999999999999987 456899999999864
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
.|++||++.+++.++..+.....||+|... | +..|+|+|+++|
T Consensus 76 -------~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~---~-~~~G~i~l~l~f 118 (118)
T cd08681 76 -------KPDLIGDTEVDLSPALKEGEFDDWYELTLK---G-RYAGEVYLELTF 118 (118)
T ss_pred -------CCcceEEEEEecHHHhhcCCCCCcEEeccC---C-cEeeEEEEEEEC
Confidence 388999999999998777666899999642 3 345999999886
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-18 Score=159.20 Aligned_cols=118 Identities=52% Similarity=1.019 Sum_probs=104.8
Q ss_pred eEEEEEEEeeCCCC-CCCcEEEEEECCeeeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEEcCCC--CCc
Q 042999 297 YLFVKIRKARGLVP-NEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSPT--ENF 373 (1006)
Q Consensus 297 ~l~V~v~~a~~l~~-~~dpyv~v~~~~~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~D~~~--d~~ 373 (1006)
||.|+|++|++|+. .+||||++.++++..+|+++ +++.||+|||.|.|.+..+. ...|.|+|||++. +++
T Consensus 1 ~L~V~Vi~a~~L~~~~~Dpyv~v~l~~~~~kT~v~-----~~t~nP~Wne~F~f~~~~~~--~~~L~~~v~d~d~~~~~~ 73 (121)
T cd08378 1 YLYVRVVKARGLPANSNDPVVEVKLGNYKGSTKAI-----ERTSNPEWNQVFAFSKDRLQ--GSTLEVSVWDKDKAKDDF 73 (121)
T ss_pred CEEEEEEEecCCCcccCCCEEEEEECCcccccccc-----CCCCCCccceEEEEEcCCCc--CCEEEEEEEeCCCCcCce
Confidence 58899999999976 78999999999999999999 99999999999999988765 6899999999874 899
Q ss_pred cEEEEEeCCcCCCCCCCCCCCcceeEEcccCCCCCCcceeeEEEEEEEeec
Q 042999 374 LGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNRVSGDIQLAVWIGT 424 (1006)
Q Consensus 374 lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~~~g~l~~~~~~~~ 424 (1006)
||.+.++++++..+.+.+....++||+|.+..+ ++.+|+|++++|+|+
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~---~~~~G~i~l~~~~~~ 121 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG---GRVGGELMLAVWFGT 121 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC---CccceEEEEEEEecC
Confidence 999999999998765555566789999998864 578899999999974
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.4e-18 Score=157.63 Aligned_cols=119 Identities=27% Similarity=0.420 Sum_probs=98.1
Q ss_pred EEEEEEEecC---CCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC-
Q 042999 18 LVVEVVDARD---LLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC- 93 (1006)
Q Consensus 18 L~V~v~~a~~---L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~- 93 (1006)
|+|+|++|++ |..+|..|++||||++.+++++.+|+++++++||+|||+|.|.+... ...|.|+|||++..+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~----~~~l~v~V~d~d~~~~ 77 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDP----CTVLTVGVFDNSQSHW 77 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCC----CCEEEEEEEECCCccc
Confidence 8899999999 88899999999999999999999999999999999999999999764 348999999998860
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC-ceeeeEEEEE
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV-FSWIRGEIGL 141 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~i~l 141 (1006)
....++|++||++.++++.+ ..+.....||+|..... ..+..|+|++
T Consensus 78 ~~~~~~dd~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 78 KEAVQPDVLIGKVRIRLSTL-EDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred cccCCCCceEEEEEEEHHHc-cCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 00002799999999999995 55666678999986432 2334677764
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.7e-18 Score=158.26 Aligned_cols=120 Identities=26% Similarity=0.420 Sum_probs=104.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
+|+|+|++|++|+.++..|.+||||++.+++ ..++|+++.++.||+|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~----~~~l~~~v~D~d~~--- 73 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDV----TQPLYIKVFDYDRG--- 73 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCC----CCeEEEEEEeCCCC---
Confidence 4889999999999999889999999999987 578999999999999999999998654 46899999999998
Q ss_pred CCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 96 SGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
+++++||.+.++++++ ..+.....|++|.+.+. .+..|+|.+.+++.+
T Consensus 74 --~~~~~iG~~~~~l~~l-~~~~~~~~~~~L~~~~~-~~~~G~l~l~~~~~~ 121 (121)
T cd04042 74 --LTDDFMGSAFVDLSTL-ELNKPTEVKLKLEDPNS-DEDLGYISLVVTLTP 121 (121)
T ss_pred --CCCcceEEEEEEHHHc-CCCCCeEEEEECCCCCC-ccCceEEEEEEEECC
Confidence 7999999999999996 45566678999986553 346899999999864
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=160.06 Aligned_cols=123 Identities=21% Similarity=0.383 Sum_probs=103.7
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCCCCc
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWRMFA 697 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~~~~ 697 (1006)
|.|+|+|++|+||++.+. .. .|.+||||++.++++..+|+++++++||.|||.|.|++.+ ....|.|+|||++..+
T Consensus 1 g~l~v~v~~a~~L~~~~~-~~-~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~- 77 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDR-SG-KGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFA- 77 (128)
T ss_pred CEEEEEEEEeeCCCcccC-CC-CCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCC-
Confidence 789999999999988652 12 5789999999999999999999999999999999999987 5679999999999876
Q ss_pred CCCCCCCCceeEEEEEEccccc---CCceEeeEEEeeeeccC-CcccccEEEEEEEE
Q 042999 698 DASEERPDYRIGKIRIRVSTLE---NNKVYTTSYPLLVLLRT-GLKKMGEIELAVRF 750 (1006)
Q Consensus 698 ~~~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~~~-g~~~~G~l~l~~~~ 750 (1006)
+|++||.+.|++.++. .......||+|.+.... .....|+|+|++.|
T Consensus 78 ------~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 78 ------GKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ------CCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 7899999999999987 23445799999875332 22346999998865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-17 Score=155.70 Aligned_cols=118 Identities=20% Similarity=0.370 Sum_probs=101.2
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEECCe-EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 18 LVVEVVDARDLLPKD-GQGSSSPYVIADFDGQ-RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
|.|+|++|+||+.++ ..|.+||||.+.++++ .++|+++++|+||+|||+|.|.+... ...|.|.|||++.+
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~----~~~l~~~v~d~~~~--- 74 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRT----FRHLSFYIYDRDVL--- 74 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCC----CCEEEEEEEECCCC---
Confidence 679999999999874 4578999999999865 58999999999999999999999763 35899999999998
Q ss_pred CCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 96 SGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+++++||.+.++++++. .+.....||+|++....++.+|+|++++.+
T Consensus 75 --~~~~~iG~~~i~l~~l~-~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 75 --RRDSVIGKVAIKKEDLH-KYYGKDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred --CCCceEEEEEEEHHHcc-CCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence 78999999999999964 455567899999765555678999998764
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=160.28 Aligned_cols=119 Identities=24% Similarity=0.378 Sum_probs=100.8
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-------EEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEEC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-------WVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDN 692 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-------~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~ 692 (1006)
.|+|+|++|+||++++ . .|.+||||++.+++. ..+|+++++++||.|||+|.|.+......|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d---~-~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKD---I-FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCccc---C-CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEEC
Confidence 3899999999998754 4 788999999999654 5799999999999999999999977677899999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCce------EeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKV------YTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
+.++ +|++||.+.|++.++..+.. ...||+|......+ +..|+|+|++.|
T Consensus 77 ~~~~-------~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~-~~~G~l~~~~~~ 132 (133)
T cd04033 77 NRLT-------RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS-RVKGHLRLYMAY 132 (133)
T ss_pred CCCC-------CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC-cceeEEEEEEee
Confidence 9887 79999999999999876543 35899998654444 345999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-18 Score=159.06 Aligned_cols=94 Identities=32% Similarity=0.596 Sum_probs=88.5
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
.|.|+|+|++|.+|..+|..+++||||++.+++|+.+|+++++++||+|||.|.|.+.++ ...|.+.|||+|.+
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~----~~~lkv~VyD~D~f-- 78 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDP----NTPLKVTVYDKDTF-- 78 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCC----CceEEEEEEeCCCC--
Confidence 579999999999999999889999999999999999999999999999999999999997 67899999999999
Q ss_pred CCCCCCceeEEEEEeCeeeeeeC
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRG 117 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~ 117 (1006)
++|||||.++|++..++...
T Consensus 79 ---s~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 79 ---SSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred ---CcccccceeeeccHHHHHHh
Confidence 89999999999999976543
|
|
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=155.12 Aligned_cols=117 Identities=24% Similarity=0.350 Sum_probs=99.6
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEE-EEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW-VRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADA 699 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~-~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 699 (1006)
|.|+|++|+||++++ . .|++||||++.++++. .||+++++++||.|||.|.|++.+....|.|.|||++.++
T Consensus 2 l~v~vi~a~~L~~~d---~-~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~--- 74 (121)
T cd04054 2 LYIRIVEGKNLPAKD---I-TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLS--- 74 (121)
T ss_pred EEEEEEEeeCCcCCC---C-CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCC---
Confidence 789999999998865 4 7899999999998764 6999999999999999999999877789999999999887
Q ss_pred CCCCCCceeEEEEEEcccccCC-ceEeeEEEeeeeccCCcccccEEEEEEE
Q 042999 700 SEERPDYRIGKIRIRVSTLENN-KVYTTSYPLLVLLRTGLKKMGEIELAVR 749 (1006)
Q Consensus 700 ~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g~~~~G~l~l~~~ 749 (1006)
+|++||++.+++..+..+ ...+.|++|......+. ..|+|++.++
T Consensus 75 ----~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~-~~G~i~l~~~ 120 (121)
T cd04054 75 ----RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEE-VQGEIHLELS 120 (121)
T ss_pred ----CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCc-cccEEEEEEE
Confidence 899999999999888754 33579999987544332 3599998764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=154.42 Aligned_cols=120 Identities=18% Similarity=0.273 Sum_probs=101.9
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCc
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFA 697 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 697 (1006)
.+.|+|+|++|++|++.+ . .|.+||||++.++++.+||++++++.||+|||.|.|.+.+....|.|+|||++..
T Consensus 2 ~~~~~V~v~~A~~L~~~d---~-~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQD---S-GGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCC---C-CCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC--
Confidence 478999999999998754 4 7899999999999999999999999999999999999988888999999999875
Q ss_pred CCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeec--cCCcccccEEEEEEEEec
Q 042999 698 DASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLL--RTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 698 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~--~~g~~~~G~l~l~~~~~~ 752 (1006)
+|++||.+.+++..+..+. ..+|+|.... .++ +..|+|.+++.+.+
T Consensus 76 ------~d~~lG~~~~~l~~~~~~~--~~~~~l~~~~~~~~~-~~~G~i~~~~~~~~ 123 (126)
T cd04046 76 ------CDEFLGQATLSADPNDSQT--LRTLPLRKRGRDAAG-EVPGTISVKVTSSD 123 (126)
T ss_pred ------CCCceEEEEEecccCCCcC--ceEEEcccCCCCCCC-CCCCEEEEEEEEcc
Confidence 4889999999998865444 5888996432 223 34599999998764
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=156.19 Aligned_cols=117 Identities=27% Similarity=0.455 Sum_probs=101.3
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcC-CCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKF-RDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
|.|.|+|++|++|+.++..+.+||||++.+++++++|+++. +++||+|||.|.|.+.... ...|.|+|||++..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~-- 75 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK---KPILKVAVFDDDKR-- 75 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCC---CCEEEEEEEeCCCC--
Confidence 57999999999999999889999999999999899999875 5799999999999998743 56899999999887
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+ +++||++.++++++.. +....+|++|...+ +..|+|+++++|
T Consensus 76 ---~-~~~iG~~~~~l~~~~~-~~~~~~w~~L~~~~---~~~G~i~l~l~f 118 (118)
T cd08681 76 ---K-PDLIGDTEVDLSPALK-EGEFDDWYELTLKG---RYAGEVYLELTF 118 (118)
T ss_pred ---C-CcceEEEEEecHHHhh-cCCCCCcEEeccCC---cEeeEEEEEEEC
Confidence 4 8999999999999644 34456899998654 458999999986
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=153.50 Aligned_cols=107 Identities=25% Similarity=0.383 Sum_probs=90.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-------eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG-------QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-------~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.|+|+|++|++|+.++ .|.+||||+|++.+ ++++|+++.+|+||+|||+|.|.+..........|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999888 48999999999831 357899999999999999999999864333356799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
+.. +++++||++.+++.++ ..+.....|++|.+..
T Consensus 80 d~~-----~~dd~IG~~~l~l~~~-~~~~~~~~w~~L~~~~ 114 (120)
T cd08395 80 CFA-----RDDRLVGVTVLQLRDI-AQAGSCACWLPLGRRI 114 (120)
T ss_pred ccc-----CCCCEEEEEEEEHHHC-cCCCcEEEEEECcCcc
Confidence 977 6899999999999996 4555677899997643
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=155.49 Aligned_cols=117 Identities=25% Similarity=0.494 Sum_probs=100.8
Q ss_pred EEEEEEEeeccCCccCccCC---CCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCC
Q 042999 619 GILELGILGARGLLPMKTKN---GGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWR 694 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d---~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~ 694 (1006)
|.|+|+|++|+||++++... . .|.+||||+++++++..+|++++++.||.|||.|.|.+.+ ....|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~-~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~ 79 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLV-KGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDP 79 (121)
T ss_pred CeEEEEEEEccCCcccccccccCC-CCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCC
Confidence 78999999999999865311 1 3689999999999999999999999999999999999976 56799999999986
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 695 MFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 695 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
. +|++||.+.+++.++..+...+.||+|.+. ..|+|+++++|
T Consensus 80 ~--------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 80 D--------KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred C--------CCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 4 488999999999999887777899999642 34999998875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-17 Score=155.97 Aligned_cols=119 Identities=26% Similarity=0.398 Sum_probs=101.1
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCCcC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~ 698 (1006)
.|+|+|++|++|++++ . .|.+||||++.+++...+|+++++++||.|||+|.|.+... ...|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~d---~-~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~-- 74 (123)
T cd04025 1 RLRCHVLEARDLAPKD---R-NGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS-- 74 (123)
T ss_pred CEEEEEEEeeCCCCCC---C-CCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC--
Confidence 3899999999998864 4 67899999999999999999999999999999999999875 468999999999877
Q ss_pred CCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccC---CcccccEEEEEEE
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRT---GLKKMGEIELAVR 749 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~---g~~~~G~l~l~~~ 749 (1006)
++++||.+.++|.++..+.....||.|...... ..+..|.|++.++
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 -----KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred -----CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 789999999999999876666899999864322 1223499998764
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-17 Score=155.45 Aligned_cols=121 Identities=26% Similarity=0.456 Sum_probs=102.2
Q ss_pred CCcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 12 ~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
....|.|+|+|++|++|+..+..|.+||||++.++++.++|+++++++||.|||+|.|.+.... ...|.|+|||++.
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~---~~~l~i~V~D~d~ 87 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLE---QDVLCITVFDRDF 87 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCcc---CCEEEEEEEECCC
Confidence 3456899999999999999998899999999999999999999999999999999999997643 4689999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeC----CceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRG----DEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+ ++|++||++.+++.++.... .....|..|.. ..+|+|++++.+
T Consensus 88 ~-----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-----~~~g~i~l~~~~ 135 (136)
T cd08375 88 F-----SPDDFLGRTEIRVADILKETKESKGPITKRLLLHE-----VPTGEVVVKLDL 135 (136)
T ss_pred C-----CCCCeeEEEEEEHHHhccccccCCCcEEEEecccc-----ccceeEEEEEEe
Confidence 8 78999999999999976521 22234566532 348999999876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-17 Score=152.07 Aligned_cols=115 Identities=26% Similarity=0.459 Sum_probs=102.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
+|+|+|++|++|+.++..|.+||||++++++++++|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~v~v~d~~~~---- 73 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQ---SQILEIEVWDKDTG---- 73 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCC---CCEEEEEEEECCCC----
Confidence 47899999999999998899999999999999999999999999999999999987653 56899999999998
Q ss_pred CCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 97 GRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
+++++||++.++++++ ..+.....|++|.+. .|+|++.+.|.
T Consensus 74 -~~~~~iG~~~~~l~~l-~~~~~~~~w~~L~~~------~G~~~~~~~~~ 115 (116)
T cd08376 74 -KKDEFIGRCEIDLSAL-PREQTHSLELELEDG------EGSLLLLLTLT 115 (116)
T ss_pred -CCCCeEEEEEEeHHHC-CCCCceEEEEEccCC------CcEEEEEEEec
Confidence 7899999999999996 455566789999853 59999988774
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=153.61 Aligned_cols=100 Identities=20% Similarity=0.296 Sum_probs=88.5
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeC----CCcEEEEEE
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLTVGV 689 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i~v 689 (1006)
|.|.|.|++|+||++++ .|.+||||++.+. ....||+++++++||.|||+|.|++.. ....|.|+|
T Consensus 13 ~~L~V~Vi~A~~L~~~~-----~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V 87 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-----GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSV 87 (122)
T ss_pred CEEEEEEEEeeCCCCCC-----CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEE
Confidence 68999999999999865 4679999999996 347899999999999999999999732 456899999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
||+|.++ ++++||.+.|+|+++..+.....||+|
T Consensus 88 ~d~d~~~-------~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 88 WSHDSLV-------ENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred EeCCCCc-------CCcEEEEEEEeccccccCCCccceEEC
Confidence 9999887 799999999999999988777899998
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-17 Score=153.45 Aligned_cols=114 Identities=29% Similarity=0.435 Sum_probs=98.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSG 97 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~ 97 (1006)
|.|+|++|++|+.+ .+||||++.+++++.+|+++++++||+|||+|.|.+.... ...|.|+|||++..
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~---~~~L~~~v~d~d~~----- 69 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQ---GSTLEVSVWDKDKA----- 69 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCc---CCEEEEEEEeCCCC-----
Confidence 78999999999877 7999999999999999999999999999999999976532 56899999999987
Q ss_pred CCCceeEEEEEeCeeeeeeC----CceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 98 RKNHFLGRVKLCGSQFARRG----DEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 98 ~~d~~lG~~~v~l~~l~~~~----~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
++++||++.++++++.... ....+||+|..... ++.+|+|+|.+.|
T Consensus 70 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~ 119 (121)
T cd08378 70 -KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWF 119 (121)
T ss_pred -cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEe
Confidence 7899999999999974322 12358999987654 5779999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=157.09 Aligned_cols=121 Identities=30% Similarity=0.435 Sum_probs=103.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCe-------EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQ-------RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-------~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.|+|+|++|++|+.++..|.+||||++.+++. .++|++++++.||.|||+|.|.+... ...|.|+|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR----EHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC----CCEEEEEEEEC
Confidence 38899999999999998899999999999754 47999999999999999999998764 45799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCC-----ceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGD-----EGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~-----~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
+.+ +++++||++.++++++..... ....||+|++....++.+|+|++++.|.
T Consensus 77 ~~~-----~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 77 NRL-----TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCC-----CCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 998 789999999999999754322 2348999997665667799999999874
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.6e-17 Score=152.71 Aligned_cols=118 Identities=25% Similarity=0.414 Sum_probs=101.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
|.|+|++|++|.+++..|.+||||++.+++.. .+|+++.+++||+|||.|.|.+... ...|.|+|||++..
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~----~~~l~v~v~d~~~~---- 73 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPG----FHTVSFYVLDEDTL---- 73 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCC----CCEEEEEEEECCCC----
Confidence 78999999999999999999999999998754 7999999999999999999998653 46899999999998
Q ss_pred CCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEE
Q 042999 97 GRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIY 144 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~ 144 (1006)
++|++||++.++++.+...+.....|++|.+........|+|++.++
T Consensus 74 -~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 74 -SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred -CCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence 78999999999998875433445689999875544557899998875
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=155.48 Aligned_cols=122 Identities=29% Similarity=0.447 Sum_probs=104.8
Q ss_pred cEEEEEEEEecCCCCCCC--CCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDG--QGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~--~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
|.|+|+|++|++|+.++. .+.+||||++.+++++++|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~---~~~l~i~v~d~~~~- 76 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ---NQLLKLILWDKDRF- 76 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCC---CCEEEEEEEECCCC-
Confidence 579999999999999887 789999999999999999999999999999999999998632 56899999999988
Q ss_pred CCCCCCCceeEEEEEeCeeeeee--CCceeEEEEceecC--CceeeeEEEEEEEEE
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARR--GDEGLVYFPLEKKS--VFSWIRGEIGLRIYY 145 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L~~~~--~~~~~~G~i~l~~~~ 145 (1006)
+++++||++.+++.++... ......|++|.+.. ......|+|+|++.|
T Consensus 77 ----~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 77 ----AGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred ----CCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 7899999999999997532 23346899998653 234578999999876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-17 Score=149.18 Aligned_cols=99 Identities=23% Similarity=0.386 Sum_probs=87.8
Q ss_pred cceEEEEEEEeeCCCCCC--CcEEEEEECCeeeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEEcCC--C
Q 042999 295 MMYLFVKIRKARGLVPNE--APYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSP--T 370 (1006)
Q Consensus 295 ~~~l~V~v~~a~~l~~~~--dpyv~v~~~~~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~D~~--~ 370 (1006)
|++|+|+|++|++|+++. ||||.|++|+++.+|+++ ++ .||+|||.|.|.+.+.+ ..|.|+|||++ .
T Consensus 1 m~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g~~k~kT~v~-----~~-~nP~WnE~F~F~~~~~~---~~L~v~V~dkd~~~ 71 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPDKFNTYVTLKVQNVKSTTIAV-----RG-SQPCWEQDFMFEINRLD---LGLVIELWNKGLIW 71 (127)
T ss_pred CceEEEEEEEeeCCCCCCCCCCeEEEEECCEEeEeeEC-----CC-CCCceeeEEEEEEcCCC---CEEEEEEEeCCCcC
Confidence 568999999999998744 999999999999999999 66 59999999999998875 55999999988 6
Q ss_pred CCccEEEEEeCCcCCCCCCCCCCCcceeEEcccCC
Q 042999 371 ENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEA 405 (1006)
Q Consensus 371 d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~ 405 (1006)
|++||++.|+|.++..+ +..+.++||+|+...
T Consensus 72 DD~lG~v~i~L~~v~~~---~~~~~~~Wy~L~~~~ 103 (127)
T cd08394 72 DTLVGTVWIPLSTIRQS---NEEGPGEWLTLDSEV 103 (127)
T ss_pred CCceEEEEEEhHHcccC---CCCCCCccEecChHH
Confidence 99999999999999985 557778999999654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.5e-17 Score=153.22 Aligned_cols=120 Identities=28% Similarity=0.485 Sum_probs=102.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEC--CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFD--GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~--~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
|.|+|++|++|+. ..|.+||||++.++ .++++|+++++++||+|||.|.|.+... ...|.|+|||++..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~~~v~d~~~~--- 71 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPN----SKELLFEVYDNGKK--- 71 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCC----CCEEEEEEEECCCC---
Confidence 6799999999987 67899999999997 4678999999999999999999998653 56899999999998
Q ss_pred CCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC-ceeeeEEEEEEEEEEecC
Q 042999 96 SGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV-FSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~~~ 149 (1006)
+++++||++.++++++. .+.....|++|.+... .....|+|.+++.|.+..
T Consensus 72 --~~~~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 72 --SDSKFLGLAIVPFDELR-KNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred --CCCceEEEEEEeHHHhc-cCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence 78999999999999964 4444568999986532 245689999999998765
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.8e-17 Score=151.89 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=91.0
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..|.|.|+|++|+||++.+. . .|.+||||++.+. ....||+++++++||+|||+|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~--~-~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~ 89 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDE--A-KKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLS 89 (125)
T ss_pred CCCeEEEEEEEecCCCccCC--C-CCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 45789999999999988642 2 5789999999984 235799999999999999999999865 35689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|||+|.++ ++++||.+.|+|.++...+..+.||||.
T Consensus 90 V~d~~~~~-------~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 90 VWHYDRFG-------RNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEECCCCC-------CCcEEEEEEEeCCcccccCCcccEEECc
Confidence 99999887 8999999999999998888889999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=151.98 Aligned_cols=126 Identities=21% Similarity=0.336 Sum_probs=104.6
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEE-EeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCC
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWV-RTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRM 695 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~-rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~ 695 (1006)
....|.|.|++|+|||++ -||||.|.++++.+ ||+++.++.||.|+|.|.|+...+...|+|.||+.+..
T Consensus 9 ~~~sL~v~V~EAk~Lp~~---------~~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~ 79 (146)
T cd04013 9 TENSLKLWIIEAKGLPPK---------KRYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEEEccCCCCc---------CCceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCc
Confidence 346799999999999874 37999999998875 99999999999999999999877778899999876543
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCC-------cccccEEEEEEEEecCC
Q 042999 696 FADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTG-------LKKMGEIELAVRFVCPS 754 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g-------~~~~G~l~l~~~~~~~~ 754 (1006)
.+.+ .++++||++.||+.++..+...+.||||.+..... ....+.|+++++|.+-.
T Consensus 80 ~~~~---~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 80 KKKK---DKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred cccc---cCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 2111 15789999999999999998889999999866543 33458999999998643
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-17 Score=148.96 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=87.1
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 698 (1006)
|.|.|.|++|++|+. .+..||||+|++|+++.+|++++++ ||.|||+|.|.+.+....|.|+|||+|.+
T Consensus 2 ~~L~V~Vv~Ar~L~~-------~~~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~--- 70 (127)
T cd08394 2 SLLCVLVKKAKLDGA-------PDKFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI--- 70 (127)
T ss_pred ceEEEEEEEeeCCCC-------CCCCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc---
Confidence 689999999999965 3346999999999999999999885 99999999999988888899999999864
Q ss_pred CCCCCCCceeEEEEEEcccccCCceE--eeEEEeeee
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVY--TTSYPLLVL 733 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~~~L~~~ 733 (1006)
.||+||++.|+|.++..+... ..||+|..+
T Consensus 71 -----~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 71 -----WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred -----CCCceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 599999999999998866544 789999754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=150.83 Aligned_cols=121 Identities=26% Similarity=0.428 Sum_probs=100.2
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
...|+|+|++|+||+.+ +.+||||++.+++.+ .+|++. ++.||.|||+|.|.+.... ...+.|.|||++..
T Consensus 3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~---~~~l~v~v~d~~~~- 74 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPD---VNSFTISLSNKAKR- 74 (126)
T ss_pred eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCC---cCEEEEEEEECCCC-
Confidence 45799999999999874 478999999998744 788875 6899999999999865532 24789999999998
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC-ceeeeEEEEEEEEEEec
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV-FSWIRGEIGLRIYYYDE 148 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~~ 148 (1006)
++|++||.+.++++++ ..+.....|++|.+... ..+..|+|+|+++|.++
T Consensus 75 ----~~d~~iG~v~i~l~~l-~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 75 ----SKDSEIAEVTVQLSKL-QNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred ----CCCCeEEEEEEEHhHc-cCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 7999999999999996 45666678999987543 34567999999999864
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.3e-17 Score=151.41 Aligned_cols=113 Identities=22% Similarity=0.322 Sum_probs=97.4
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMF 696 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~ 696 (1006)
|+|+|++|++|++.+ . .|++||||++.++ .+..||++++++.||+|||+|.|.+... ...|.|+|||+|..
T Consensus 2 L~V~vi~a~~L~~~~---~-~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~- 76 (119)
T cd04036 2 LTVRVLRATNITKGD---L-LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV- 76 (119)
T ss_pred eEEEEEEeeCCCccC---C-CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-
Confidence 789999999998854 4 7889999999986 4678999999999999999999998764 45799999999875
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
+|++||++.++++++..+.....||+|... ..|+|++++.+.
T Consensus 77 -------~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~~ 118 (119)
T cd04036 77 -------MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLLE 118 (119)
T ss_pred -------CCcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEee
Confidence 488999999999999999888999999642 249999988763
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-17 Score=152.64 Aligned_cols=104 Identities=18% Similarity=0.307 Sum_probs=89.1
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGV 689 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v 689 (1006)
.+.|.|+|++|+||++++. . .|.+||||++.+. ....||+++++++||+|||.|.|++.. ....|.|+|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~--~-~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V 90 (125)
T cd08393 14 LRELHVHVIQCQDLAAADP--K-KQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV 90 (125)
T ss_pred CCEEEEEEEEeCCCCCcCC--C-CCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence 4689999999999998652 1 3789999999983 235799999999999999999999864 346899999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
||+|.++ ++++||.+.|+|.++..++....||+|.
T Consensus 91 ~d~~~~~-------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 91 WHRDSLG-------RNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EeCCCCC-------CCcEeEEEEEecCccccCCCCcceEECc
Confidence 9999877 8999999999999998777678999983
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.1e-17 Score=149.23 Aligned_cols=101 Identities=15% Similarity=0.218 Sum_probs=87.0
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-C----C--EEEEeecccCCCCCeeccEEEEEEeCC----CcEEEEE
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-G----K--KWVRTRTITDCFDPRWNEQYTWQVYDP----CTVLTVG 688 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-~----~--~~~rT~~~~~~~nP~wne~~~~~v~~~----~~~l~i~ 688 (1006)
.|+|+|++|++|++.+ .|.+||||+|.+ | . ++.+|+++.+++||+|||+|.|.+... ...|.|.
T Consensus 1 kL~V~Vi~A~~L~~~d-----~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~ 75 (120)
T cd08395 1 KVTVKVVAANDLKWQT-----TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHIC 75 (120)
T ss_pred CEEEEEEECcCCCccc-----CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEE
Confidence 3899999999998753 578999999997 3 2 357899999999999999999999742 2469999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||+|..+ +|++||++.++++++..++....|++|..
T Consensus 76 V~D~d~~~-------~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 76 VKDYCFAR-------DDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred EEEecccC-------CCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 99998765 78999999999999998888889999954
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=151.82 Aligned_cols=122 Identities=25% Similarity=0.405 Sum_probs=98.6
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADA 699 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 699 (1006)
.|+|+|++|++|+.+| . .|.+||||++.++++..+|+++.+++||.|||.|.|.+..+...|.|+|||+|....++
T Consensus 2 ~L~V~vi~a~~L~~~d---~-~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKD---K-TGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCC---C-CCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCcccc
Confidence 5899999999998854 4 78899999999999999999999999999999999999877788999999998531000
Q ss_pred ----CCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEE
Q 042999 700 ----SEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAV 748 (1006)
Q Consensus 700 ----~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~ 748 (1006)
-...+|++||.+.+++.++.... ..||+|......+. ..|+|.|++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~~~~~--~~w~~L~~~~~~~~-~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTLSGEM--DVWYNLEKRTDKSA-VSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHccCCC--CeEEECccCCCCCc-EeEEEEEEC
Confidence 00016899999999999886444 79999987653332 359998864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=149.70 Aligned_cols=118 Identities=29% Similarity=0.496 Sum_probs=103.8
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
|.|.|+|++|++|+.++..+.+||||++.+++...+|++++++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~----~~~l~~~v~d~~~~--- 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDI----HDVLEVTVYDEDKD--- 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCc----CCEEEEEEEECCCC---
Confidence 57999999999999999889999999999998889999999999999999999998653 46899999999987
Q ss_pred CCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 96 SGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+++++||++.+++.++. .+ ...|+.|.+.....+.+|+|.+++.+
T Consensus 74 --~~~~~iG~~~~~l~~~~-~~--~~~~~~l~~~~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 74 --KKPEFLGKVAIPLLSIK-NG--ERKWYALKDKKLRTRAKGSILLEMDV 118 (119)
T ss_pred --CCCceeeEEEEEHHHCC-CC--CceEEECcccCCCCceeeEEEEEEEe
Confidence 68999999999999863 33 24799998766566679999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=150.09 Aligned_cols=122 Identities=25% Similarity=0.428 Sum_probs=104.2
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
...|+|+|++|++|...+..|.+||||++.+++++++|++++++.||+|||.|.|.+... ...|.|+|||++..
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~----~~~l~i~V~d~~~~-- 75 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKP----RSPIKIQVWNSNLL-- 75 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCC----CCEEEEEEEECCCC--
Confidence 468999999999999998889999999999999999999999999999999999988764 56899999999987
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC--CceeeeEEEEEEEEEEecC
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS--VFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~--~~~~~~G~i~l~~~~~~~~ 149 (1006)
+|++||.+.++++.+ . .....|++|.+.. ..++..|+|.+++...+..
T Consensus 76 ----~d~~lG~~~~~l~~~-~--~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~~ 125 (126)
T cd04046 76 ----CDEFLGQATLSADPN-D--SQTLRTLPLRKRGRDAAGEVPGTISVKVTSSDDL 125 (126)
T ss_pred ----CCCceEEEEEecccC-C--CcCceEEEcccCCCCCCCCCCCEEEEEEEEcccc
Confidence 589999999999874 2 3334788886432 4456789999999887753
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-17 Score=152.59 Aligned_cols=105 Identities=24% Similarity=0.349 Sum_probs=90.1
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+.++ .+.+||||++++. ..+++|++++++.||+|||+|.|.+....+.....|.|+|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 468999999999999999 8999999999995 3568999999999999999999997332233367899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
+.+ +++++||++.++++++ ..+.....||+|
T Consensus 91 d~~-----~~~~~lG~~~i~l~~l-~~~~~~~~W~~L 121 (122)
T cd08381 91 DSL-----VENEFLGGVCIPLKKL-DLSQETEKWYPL 121 (122)
T ss_pred CCC-----cCCcEEEEEEEecccc-ccCCCccceEEC
Confidence 998 7899999999999996 445555689987
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-17 Score=148.11 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=86.6
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
..+.|+|+|++|++|+ . .|.+||||++++.. .+++|+++++|+||+|||+|.|.+... ++.+..|.|.|||+
T Consensus 12 ~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~-~l~~~tL~~~V~d~ 87 (118)
T cd08677 12 QKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEE-ESLDGTLTLTLRCC 87 (118)
T ss_pred cCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHH-HhCCcEEEEEEEeC
Confidence 3678999999999998 3 36699999999952 568999999999999999999998764 44478899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
|++ +++++||++.++++++ ..+....+|..|
T Consensus 88 Drf-----s~~d~IG~v~l~l~~~-~~~~~~~~W~~~ 118 (118)
T cd08677 88 DRF-----SRHSTLGELRLKLADV-SMMLGAAQWVDL 118 (118)
T ss_pred CCC-----CCCceEEEEEEccccc-cCCccccchhcC
Confidence 999 8999999999999984 444445567654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-16 Score=152.03 Aligned_cols=121 Identities=29% Similarity=0.377 Sum_probs=101.0
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC--EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCC
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK--KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRM 695 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~--~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~ 695 (1006)
+|.|+|+|++|++|+..+ .. .+.+||||++.+++ +..||+++.++.||.|||.|.|.+......|.|+|||++..
T Consensus 1 ~g~l~v~v~~a~~L~~~~--~~-~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~ 77 (124)
T cd04044 1 IGVLAVTIKSARGLKGSD--II-GGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDK 77 (124)
T ss_pred CeEEEEEEEcccCCCccc--cc-CCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCC
Confidence 589999999999998643 12 56799999999987 78999999999999999999999987688999999999987
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCceEe-eEEEeeeeccCCcccccEEEEEEEEec
Q 042999 696 FADASEERPDYRIGKIRIRVSTLENNKVYT-TSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
+ +|++||++.++|.++..+...+ .+++|.. .| +..|+|+++++|.|
T Consensus 78 ~-------~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~---~~-k~~G~i~~~l~~~p 124 (124)
T cd04044 78 R-------KDKLIGTAEFDLSSLLQNPEQENLTKNLLR---NG-KPVGELNYDLRFFP 124 (124)
T ss_pred C-------CCceeEEEEEEHHHhccCccccCcchhhhc---CC-ccceEEEEEEEeCC
Confidence 6 7999999999999998776554 3455532 22 34599999999963
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.5e-17 Score=147.35 Aligned_cols=97 Identities=20% Similarity=0.305 Sum_probs=84.3
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC--CcEEEEEEEECCCCC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP--CTVLTVGVFDNWRMF 696 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~--~~~l~i~v~d~~~~~ 696 (1006)
|.|.|+|++|++|++.+......+.+||||++.++++.+||+++++++||+|||.|.|++.+. ...|.|.|||+|.++
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~ 80 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS 80 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence 789999999999999764221134689999999999999999999999999999999998763 347999999999887
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCc
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNK 722 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~ 722 (1006)
+|++||++.++|++|..+.
T Consensus 81 -------~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 81 -------FNDYVATGSLSVQELLNAA 99 (108)
T ss_pred -------CCcceEEEEEEHHHHHhhC
Confidence 8999999999999997654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.2e-17 Score=153.81 Aligned_cols=105 Identities=25% Similarity=0.304 Sum_probs=90.8
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--C---EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEE-EC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--K---KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVF-DN 692 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~---~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~-d~ 692 (1006)
|.|.|+|++|+||++++ +. .|.+||||++++. + .+.||+++++++||+|||+|.|++......|.|+|| |+
T Consensus 29 ~~L~V~Vi~ArnL~~~~--~~-~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~ 105 (146)
T cd04028 29 GQLEVEVIRARGLVQKP--GS-KVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDY 105 (146)
T ss_pred CEEEEEEEEeeCCCccc--CC-CCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCC
Confidence 68999999999998753 23 6789999999993 3 367999999999999999999999866779999999 57
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
+.+. ++++||.+.|+|+++..+.....||+|...
T Consensus 106 ~~~~-------~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 106 GRMD-------KKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CCCC-------CCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 7665 789999999999999877777899999763
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.3e-17 Score=146.59 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=85.3
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC----EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK----KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~----~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
+..|.|.|+|++|++|+. .|.+||||++.+.. .+.+|++.++|+||+|||+|.|+|.. +...|.|+
T Consensus 11 ~~~~~L~V~vikA~~L~~-------~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~ 83 (118)
T cd08677 11 KQKAELHVNILEAENISV-------DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLT 83 (118)
T ss_pred CcCCEEEEEEEEecCCCC-------CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEE
Confidence 356899999999999972 45699999999853 46799999999999999999999865 45689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
|||+|+++ ++++||++.+++.++..+...++|..|
T Consensus 84 V~d~Drfs-------~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 84 LRCCDRFS-------RHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred EEeCCCCC-------CCceEEEEEEccccccCCccccchhcC
Confidence 99999998 899999999999987555444677654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=150.55 Aligned_cols=119 Identities=22% Similarity=0.278 Sum_probs=100.5
Q ss_pred cEEEEEEEeeccCCccCccCC---C---CCCCCCeEEEEEECCEE-EEeecccCCCCCeeccEEEEEEeCCCcEEEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKN---G---GKGSTDAYCVAKYGKKW-VRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVF 690 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d---~---~~g~sdpyv~v~~~~~~-~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~ 690 (1006)
.|.|+|+|++|++|++.+..- . +.|.+||||++.++++. .+|+++++++||.|||+|.|++. ....|.|.||
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~ 81 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF 81 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence 589999999999998865310 0 03689999999999866 59999999999999999999996 4578999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccC--CceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLEN--NKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
|++.++ +|++||++.++|.++.. +...+.||+|. +.|+|+|++.|..
T Consensus 82 d~~~~~-------~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 82 HDAAIG-------PDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eCCCCC-------CCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 998876 78999999999999887 45568999994 2499999999975
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=150.05 Aligned_cols=118 Identities=31% Similarity=0.470 Sum_probs=100.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
+|+|+|++|++|..++..+.+||||+++++++..+|+++++++||+|||+|.|.+.... ...|.|+|||++..
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~---~~~l~~~v~d~~~~---- 73 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGA---DSPLSVEVWDWDLV---- 73 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCC---CCEEEEEEEECCCC----
Confidence 48999999999999998889999999999999999999999999999999999987743 46899999999998
Q ss_pred CCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC----ceeeeEEEEEEE
Q 042999 97 GRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV----FSWIRGEIGLRI 143 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~----~~~~~G~i~l~~ 143 (1006)
+++++||.+.++++++.. +.....|+.|.+.+. ..+..|.|.+.|
T Consensus 74 -~~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 74 -SKNDFLGKVVFSIQTLQQ-AKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred -CCCcEeEEEEEEHHHccc-CCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 789999999999999643 444567999986432 234679998876
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=149.00 Aligned_cols=113 Identities=27% Similarity=0.416 Sum_probs=98.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
|.|+|++|++|+..+..+.+||||++.++ ..+++|++++++.||+|||+|.|.+.... ...|.|+|||++..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~---~~~l~v~v~d~d~~-- 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQV---KNVLELTVMDEDYV-- 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCccc---CCEEEEEEEECCCC--
Confidence 78999999999998888899999999996 36689999999999999999999987642 45799999999987
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
++++||++.++++++ ..+.....|++|.+.+ +|++.+++.+
T Consensus 77 ----~~~~iG~~~~~l~~l-~~g~~~~~~~~L~~~~-----~g~l~~~~~~ 117 (119)
T cd04036 77 ----MDDHLGTVLFDVSKL-KLGEKVRVTFSLNPQG-----KEELEVEFLL 117 (119)
T ss_pred ----CCcccEEEEEEHHHC-CCCCcEEEEEECCCCC-----CceEEEEEEe
Confidence 789999999999995 5666777899998654 7888888765
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=149.25 Aligned_cols=116 Identities=26% Similarity=0.450 Sum_probs=100.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEC-CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFD-GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
|+|+|++|++|+.++..+.+||||+++++ .+.++|+++++++||.|||+|.|.+.. ...|.|+|||++.+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~---- 72 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKF---- 72 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCC----
Confidence 78999999999999988999999999996 677999999999999999999999965 45899999999988
Q ss_pred CCC--CceeEEEEEeCeeeeeeCCceeEEEEceecCC--ceeeeEEEEEEE
Q 042999 97 GRK--NHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV--FSWIRGEIGLRI 143 (1006)
Q Consensus 97 ~~~--d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~--~~~~~G~i~l~~ 143 (1006)
++ +++||++.+++.+++........|++|.+.+. .....|+|.+++
T Consensus 73 -~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 73 -KKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred -CCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 43 58999999999998665555567999976554 455689998876
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=154.38 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=94.5
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEe---------------
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVY--------------- 679 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~--------------- 679 (1006)
.|.|+|++|+||++ . +|.+||||+|.+++ ...||+++++|+||+|||.|.|++.
T Consensus 1 kL~V~Vi~ArnL~~-----~-~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~ 74 (148)
T cd04010 1 KLSVRVIECSDLAL-----K-NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEE 74 (148)
T ss_pred CEEEEEEeCcCCCC-----C-CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcc
Confidence 38999999999976 2 77899999999965 5779999999999999999999995
Q ss_pred C-CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCC-ceEeeEEEeeeeccCC---------cccccEEEEEE
Q 042999 680 D-PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENN-KVYTTSYPLLVLLRTG---------LKKMGEIELAV 748 (1006)
Q Consensus 680 ~-~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~g---------~~~~G~l~l~~ 748 (1006)
+ ....|.|.|||++..+ .|++||++.|+|..+..+ .....||+|....... ....|.|+|.+
T Consensus 75 ~~~~~~L~i~V~d~~~~~-------~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 75 DAEKLELRVDLWHASMGG-------GDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred cccEEEEEEEEEcCCCCC-------CCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 1 1247999999999876 799999999999999876 5568999997754321 12237777765
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-16 Score=149.44 Aligned_cols=115 Identities=32% Similarity=0.552 Sum_probs=99.5
Q ss_pred cEEEEEEEEecCCCCCCC------CCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 16 RKLVVEVVDARDLLPKDG------QGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~------~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
|.|+|+|++|++|+.++. .|.+||||++.++++.++|++++++.||.|||+|.|.+.... ...|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~---~~~l~i~v~d~ 77 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVP---GQELEIELFDE 77 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCC---CCEEEEEEEec
Confidence 579999999999998874 368999999999999999999999999999999999987643 56899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+.. ++++||.+.++++++.. +.....|++|.+.. .|+|+++++|
T Consensus 78 ~~~------~~~~iG~~~i~l~~l~~-~~~~~~w~~L~~~~-----~G~~~~~~~~ 121 (121)
T cd08391 78 DPD------KDDFLGRLSIDLGSVEK-KGFIDEWLPLEDVK-----SGRLHLKLEW 121 (121)
T ss_pred CCC------CCCcEEEEEEEHHHhcc-cCccceEEECcCCC-----CceEEEEEeC
Confidence 987 78999999999999754 44457899998642 7999998865
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-16 Score=154.45 Aligned_cols=108 Identities=23% Similarity=0.369 Sum_probs=89.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEee------------CCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVS------------DPKNMDC 79 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~------------~~~~~~~ 79 (1006)
.|.|+|++|++|.. ..|.+||||+|.+.+ ++++|+++++++||+|||+|.|.+. ...+...
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48899999999987 468999999999975 6689999999999999999999985 1122224
Q ss_pred ceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC
Q 042999 80 EELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV 131 (1006)
Q Consensus 80 ~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~ 131 (1006)
..|.|.|||++.. ++|+|||++.+++..+.........||+|.+.+.
T Consensus 79 ~~L~i~V~d~~~~-----~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~ 125 (148)
T cd04010 79 LELRVDLWHASMG-----GGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEEcCCCC-----CCCceeEEEEEecccccccCCcCcceeecCCccc
Confidence 6799999999998 7899999999999996433244568999986553
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=148.20 Aligned_cols=102 Identities=25% Similarity=0.401 Sum_probs=90.1
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCee-ccEEEEEEeCC---CcEEEEEEEECCCCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRW-NEQYTWQVYDP---CTVLTVGVFDNWRMF 696 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~w-ne~~~~~v~~~---~~~l~i~v~d~~~~~ 696 (1006)
|+|+|++|+||++++. . .|.+||||++.++++..||+++++++||.| ||.|.|.+... ...|.|+|||++.++
T Consensus 1 l~V~v~~a~~L~~~d~--~-~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~ 77 (110)
T cd08688 1 LKVRVVAARDLPVMDR--S-SDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS 77 (110)
T ss_pred CEEEEEEEECCCcccc--C-CCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC
Confidence 6899999999998652 2 678999999999999999999999999999 99999999763 468999999999887
Q ss_pred cCCCCCCCCceeEEEEEEcccccC---CceEeeEEEeee
Q 042999 697 ADASEERPDYRIGKIRIRVSTLEN---NKVYTTSYPLLV 732 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~ 732 (1006)
+|++||++.+++.++.. +...+.||+|.+
T Consensus 78 -------~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 78 -------ANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred -------CCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 78999999999999977 345789999964
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-16 Score=148.88 Aligned_cols=120 Identities=32% Similarity=0.547 Sum_probs=100.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC-
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG- 95 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~- 95 (1006)
.|+|+|++|++|+.++..|.+||||++.++++.++|+++.+++||.|||+|.|.+... ...|.|+|||+|.....
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~----~~~l~i~v~d~d~~~~~~ 77 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNS----SDRIKVRVWDEDDDIKSR 77 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCC----CCEEEEEEEECCCCcccc
Confidence 6899999999999999889999999999998889999999999999999999988654 35799999999852100
Q ss_pred -----CCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEE
Q 042999 96 -----SGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRI 143 (1006)
Q Consensus 96 -----~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~ 143 (1006)
..+.+++||.+.+++.++ . ....+|+.|.+.+.++..+|+|.+++
T Consensus 78 ~~~~~~~~~~~~iG~~~i~l~~~-~--~~~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 78 LKQKFTRESDDFLGQTIIEVRTL-S--GEMDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cceeccccCCCcceEEEEEhHHc-c--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence 013689999999999885 2 33458999998877778899999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=149.46 Aligned_cols=104 Identities=19% Similarity=0.349 Sum_probs=91.5
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVGVF 690 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~v~ 690 (1006)
..|.|.|+|++|+||++++ . .|.+||||++.++ ++..||+++++++||+|||.|.|.+... ...|.|+||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d---~-~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~ 89 (124)
T cd08387 14 DMGILNVKLIQARNLQPRD---F-SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLY 89 (124)
T ss_pred CCCEEEEEEEEeeCCCCCC---C-CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEE
Confidence 4579999999999998854 4 7889999999983 4568999999999999999999998653 468999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|++.++ +|++||.+.|+|+++..+...+.||+|.
T Consensus 90 d~~~~~-------~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 90 DFDQFS-------RDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred ECCCCC-------CCceeEEEEEecccccCCCCcceEEECc
Confidence 999876 7999999999999998777788999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-16 Score=153.64 Aligned_cols=121 Identities=22% Similarity=0.348 Sum_probs=101.4
Q ss_pred ccEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEECCeE-EEeeCcCCCCCCee
Q 042999 15 VRKLVVEVVDARDLLPKD------------------------------GQGSSSPYVIADFDGQR-KRTSTKFRDLNPVW 63 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~------------------------------~~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~w 63 (1006)
.|.|.|+|.+|++|+++| ..|++||||++.+++.+ .+|++++++.||+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W 85 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW 85 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence 378999999999999987 35779999999999755 69999999999999
Q ss_pred eeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCc-eeeeEEEEEE
Q 042999 64 NEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVF-SWIRGEIGLR 142 (1006)
Q Consensus 64 ne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~-~~~~G~i~l~ 142 (1006)
||+|.|.+... .+.|.|.|||++.+ ++++||++.++++++. .+.....|++|.+.... .+..|+|+++
T Consensus 86 nE~F~~~~~~~----~~~l~~~V~d~d~~------~~~~IG~~~i~l~~l~-~g~~~~~w~~L~~~~~~~~~~~~~l~v~ 154 (158)
T cd04015 86 NESFHIYCAHY----ASHVEFTVKDNDVV------GAQLIGRAYIPVEDLL-SGEPVEGWLPILDSNGKPPKPGAKIRVS 154 (158)
T ss_pred ceEEEEEccCC----CCEEEEEEEeCCCc------CCcEEEEEEEEhHHcc-CCCCcceEEECcCCCCCCCCCCCEEEEE
Confidence 99999998764 45799999999988 5689999999999964 56667799999864322 2346899999
Q ss_pred EEEE
Q 042999 143 IYYY 146 (1006)
Q Consensus 143 ~~~~ 146 (1006)
+.|.
T Consensus 155 ~~f~ 158 (158)
T cd04015 155 LQFT 158 (158)
T ss_pred EEEC
Confidence 9884
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-16 Score=147.05 Aligned_cols=115 Identities=21% Similarity=0.315 Sum_probs=100.6
Q ss_pred EeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEEEEECCCCCcCCCC
Q 042999 625 ILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVGVFDNWRMFADASE 701 (1006)
Q Consensus 625 v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~v~d~~~~~~~~~~ 701 (1006)
|++|++|++ . .|++||||++.+++...||++++++.||+|||.|.|++.++ ...|.|+|||++..+
T Consensus 2 vi~a~~L~~-----~-~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~----- 70 (127)
T cd08373 2 VVSLKNLPG-----L-KGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG----- 70 (127)
T ss_pred eEEeeCCcc-----c-CCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC-----
Confidence 689999976 3 77899999999999999999999999999999999999763 578999999999876
Q ss_pred CCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecCC
Q 042999 702 ERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPS 754 (1006)
Q Consensus 702 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~~ 754 (1006)
+|++||.+.++|.++..+.....|++|.+.... ...|+|++++.|.+.+
T Consensus 71 --~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 71 --RNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGR--PTGATISLEVSYQPPD 119 (127)
T ss_pred --CCceEEEEEEEhhHcccCCceEEEEeCcCCCCC--cccEEEEEEEEEeCCC
Confidence 789999999999999988878899999764332 2349999999998764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-16 Score=147.25 Aligned_cols=117 Identities=23% Similarity=0.314 Sum_probs=95.5
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-CEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-KKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADA 699 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 699 (1006)
|+|+|++|++|++++ . .|.+||||++.++ .+.+||+++++++||.|||.|.|++.. ...|.|+|||++.++
T Consensus 2 l~v~v~~A~~L~~~~---~-~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~--- 73 (123)
T cd08382 2 VRLTVLCADGLAKRD---L-FRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFK--- 73 (123)
T ss_pred eEEEEEEecCCCccC---C-CCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCC---
Confidence 789999999998754 4 7899999999996 778899999999999999999999965 779999999999875
Q ss_pred CCCC-CCceeEEEEEEcccccCCce-EeeEEEeeeeccCCc-ccccEEEEEE
Q 042999 700 SEER-PDYRIGKIRIRVSTLENNKV-YTTSYPLLVLLRTGL-KKMGEIELAV 748 (1006)
Q Consensus 700 ~~~~-~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~-~~~G~l~l~~ 748 (1006)
. .|++||++.+++.++..... ...||+|........ ...|+|.+++
T Consensus 74 ---~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 ---KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred ---CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 1 26899999999999875432 257999977554221 1248888765
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-16 Score=143.08 Aligned_cols=99 Identities=21% Similarity=0.328 Sum_probs=87.5
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCCcC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~ 698 (1006)
.|.|+|++|++|++.+ . .|.+||||+++++++..||+++.++.||+|||.|.|.+.++ .+.|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~---~-~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAK---S-TKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---- 72 (105)
T ss_pred CEEEEEeeecCCCCcc---c-CCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC----
Confidence 3789999999998854 4 78999999999999999999999999999999999999985 5689999999863
Q ss_pred CCCCCCCceeEEEEEEcccccCC--ceEeeEEEeee
Q 042999 699 ASEERPDYRIGKIRIRVSTLENN--KVYTTSYPLLV 732 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~ 732 (1006)
|++||++.|+|.++..+ ...+.||+|.+
T Consensus 73 ------~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 73 ------GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred ------CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 67999999999998754 35789999964
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-16 Score=146.26 Aligned_cols=104 Identities=26% Similarity=0.318 Sum_probs=90.6
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVF 690 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~ 690 (1006)
..|.|.|+|++|+||++++ . .|.+||||++.+. .+..||+++++++||.|||.|.|.+.. ....|.|+||
T Consensus 14 ~~~~L~V~v~~a~~L~~~d---~-~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~ 89 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMD---M-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVY 89 (124)
T ss_pred CCCEEEEEEEEeeCCCCcc---C-CCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEE
Confidence 3478999999999998854 4 7789999999984 357799999999999999999999865 2468999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|+|.++ +|++||++.++|+++..+...+.||+|.
T Consensus 90 d~d~~~-------~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 90 DFDRFS-------KHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eCCCCC-------CCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999887 7899999999999998877778999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-16 Score=147.40 Aligned_cols=125 Identities=24% Similarity=0.335 Sum_probs=100.9
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCC----CC--CCceEEEEEEeC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPK----NM--DCEELEIEVYND 89 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~----~~--~~~~L~i~V~d~ 89 (1006)
+.|+|+|++|++|+.++..|.+||||++.+++++++|+++++++||.|||+|.|.+.... .. ....|.|+|||+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~ 80 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ 80 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence 368999999999999999999999999999999999999999999999999999753211 00 124699999999
Q ss_pred CCCCCCCCCCCceeEEEEE-eCeeeee--eCCceeEEEEceecCCceeeeEEEEEEEEEEec
Q 042999 90 KRYCNGSGRKNHFLGRVKL-CGSQFAR--RGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDE 148 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v-~l~~l~~--~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 148 (1006)
+.. ++|++||++.+ ++..+.. .+....+|++|.+.+ ...|+|.+.+++.+.
T Consensus 81 d~~-----~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~~ 134 (135)
T cd04017 81 DSV-----GKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIEV 134 (135)
T ss_pred cCC-----CCCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEEe
Confidence 998 78999999997 4444322 124456899998654 358999999998864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-16 Score=145.10 Aligned_cols=101 Identities=24% Similarity=0.348 Sum_probs=86.6
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeC--CCcEEEEEEEE
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYD--PCTVLTVGVFD 691 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~--~~~~l~i~v~d 691 (1006)
|.|.|+|++|+||++++ .|.+||||++.+.+ ...||+++.+++||.|||+|.|++.. ....|.|+|||
T Consensus 12 ~~L~V~Vi~ar~L~~~~-----~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~ 86 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-----SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWN 86 (119)
T ss_pred CEEEEEEEEEECCCCCC-----CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEEC
Confidence 68999999999998864 56899999999853 36689999999999999999999865 33578999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 692 NWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 692 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
.+... ..+++||.+.|+|.++..+...+.||.|
T Consensus 87 ~~~~~------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKS------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCCCc------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 98754 1478999999999999888778899986
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.2e-16 Score=145.08 Aligned_cols=104 Identities=19% Similarity=0.213 Sum_probs=87.5
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..+.|.|+|++|+||++++. . .|.+||||++.+. ..+.||+++++++||+|||+|.|++.. ....|.|.
T Consensus 13 ~~~~L~V~V~~a~nL~~~d~--~-~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~ 89 (128)
T cd08392 13 RTSCLEITIKACRNLAYGDE--K-KKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVS 89 (128)
T ss_pred CCCEEEEEEEecCCCCccCC--C-CCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEE
Confidence 34699999999999998642 1 3889999999984 236799999999999999999999865 35689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCC---ceEeeEEEe
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENN---KVYTTSYPL 730 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L 730 (1006)
|||.+.++ ++++||.+.|+|.++... .....||+|
T Consensus 90 V~~~~~~~-------~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLK-------RRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEeCCCCc-------CcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 99999876 789999999999998643 345799998
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.2e-16 Score=148.29 Aligned_cols=106 Identities=29% Similarity=0.524 Sum_probs=90.6
Q ss_pred ccEEEEEEEEecCCCCCCCC-CCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 15 VRKLVVEVVDARDLLPKDGQ-GSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
.+.|.|+|++|+||++++.. |.+||||++++. ..+++|+++++++||+|||+|.|.+.... +....|.|+|||
T Consensus 14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~-l~~~~L~~~V~d 92 (125)
T cd08393 14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE-LPTRVLNLSVWH 92 (125)
T ss_pred CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH-hCCCEEEEEEEe
Confidence 46899999999999999975 899999999994 24589999999999999999999986532 235689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
++.+ +++++||++.++|.++ ...+....||+|+
T Consensus 93 ~~~~-----~~~~~iG~~~i~L~~~-~~~~~~~~W~~L~ 125 (125)
T cd08393 93 RDSL-----GRNSFLGEVEVDLGSW-DWSNTQPTWYPLQ 125 (125)
T ss_pred CCCC-----CCCcEeEEEEEecCcc-ccCCCCcceEECc
Confidence 9998 7899999999999996 5555556899884
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-16 Score=146.59 Aligned_cols=120 Identities=26% Similarity=0.381 Sum_probs=99.5
Q ss_pred cEEEEEEEEecCCCCCC-CCCCCCcEEEEEECC--eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCC
Q 042999 16 RKLVVEVVDARDLLPKD-GQGSSSPYVIADFDG--QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRY 92 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~ 92 (1006)
|.|.|+|++|++|+..+ ..+.+||||++.+++ ..++|+++.++.||.|||.|.|.+... ...|.|+|||++..
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~----~~~l~~~v~d~~~~ 77 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSL----TEPLNLTVYDFNDK 77 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCC----CCEEEEEEEecCCC
Confidence 68999999999998655 356799999999987 779999999999999999999998742 56899999999988
Q ss_pred CCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 93 CNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 93 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
++|++||.+.+++.++...+.....|..|... ++..|+|+++++|.|
T Consensus 78 -----~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~---~k~~G~i~~~l~~~p 124 (124)
T cd04044 78 -----RKDKLIGTAEFDLSSLLQNPEQENLTKNLLRN---GKPVGELNYDLRFFP 124 (124)
T ss_pred -----CCCceeEEEEEEHHHhccCccccCcchhhhcC---CccceEEEEEEEeCC
Confidence 78999999999999976544433345555432 245899999999975
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-16 Score=145.35 Aligned_cols=99 Identities=26% Similarity=0.371 Sum_probs=86.4
Q ss_pred EEEEEEEeeccCCccCccCCCCC-CCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeCC----CcEEEEEEE
Q 042999 619 GILELGILGARGLLPMKTKNGGK-GSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYDP----CTVLTVGVF 690 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~-g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~~----~~~l~i~v~ 690 (1006)
|.|+|+|++|+||++++ . . |.+||||++.+. +...+|+++++++||+|||.|.|.+... ...|.|+||
T Consensus 1 G~L~V~v~~a~~L~~~d---~-~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~ 76 (111)
T cd04041 1 GVLVVTIHRATDLPKAD---F-GTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLW 76 (111)
T ss_pred CEEEEEEEEeeCCCccc---C-CCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEE
Confidence 78999999999999865 3 5 789999999983 4578999999999999999999988653 568999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|+|.++ +|++||++.+++.++... ..|++++
T Consensus 77 d~d~~~-------~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 77 DSDRFT-------ADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred eCCCCC-------CCCcceEEEEEHHHHhcC---CCCCccc
Confidence 999887 799999999999999733 6888884
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-16 Score=147.69 Aligned_cols=106 Identities=25% Similarity=0.370 Sum_probs=90.4
Q ss_pred ccEEEEEEEEecCCCCCC-CCCCCCcEEEEEEC--C---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE-
Q 042999 15 VRKLVVEVVDARDLLPKD-GQGSSSPYVIADFD--G---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY- 87 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~- 87 (1006)
.+.|.|+|++|+||.+++ ..|.+||||++++. + .++||+++++++||+|||+|.|.+.. .+..|.|+||
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l----~~~~L~v~V~~ 103 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP----TGKTLQVIVWG 103 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcC----CCCEEEEEEEe
Confidence 368999999999998874 56889999999994 2 36899999999999999999999983 2678999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
|++.+ +++++||++.|+|+++ ..+.....||+|.+..
T Consensus 104 d~~~~-----~~~~~iG~~~i~L~~l-~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 104 DYGRM-----DKKVFMGVAQILLDDL-DLSNLVIGWYKLFPTS 140 (146)
T ss_pred CCCCC-----CCCceEEEEEEEcccc-cCCCCceeEEecCCcc
Confidence 57777 7899999999999995 5555667899998654
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-16 Score=174.48 Aligned_cols=165 Identities=18% Similarity=0.235 Sum_probs=140.7
Q ss_pred cchHhhHHHHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHHHHHHhhcCcc--hhHHHHHHHHHHhhhcccc-CCC
Q 042999 820 WSMRKSKANWFRIVAVLAWAIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWYPDL--IVPTGFLYVVLIGVWYYRF-RPK 896 (1006)
Q Consensus 820 fs~~~~~~n~~rl~~~l~~~~~~~~~~~~~~~W~~p~~t~~~~~~~~~~~~~p~l--~~~~~~l~~~~~~~~~~~~-~~~ 896 (1006)
.+...+-+|+.-|++++.|+..+..+++.+.+||+|.+|+.+++++.+++|..|+ ++|.++++++++|+|.+.. +.+
T Consensus 480 vkveGI~tNvav~kELL~Pl~~i~~~~~~l~~We~P~kt~~Fl~~~~~iI~r~wl~Y~~p~~Ll~~a~~Ml~~r~~~~~g 559 (683)
T PF04842_consen 480 VKVEGIDTNVAVMKELLFPLIEIAKWLQKLASWEEPLKTLVFLALFLYIIYRGWLGYIFPAFLLFSAVFMLWLRYQGRLG 559 (683)
T ss_pred HhhcCCccHHHHHHhccccHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 3445566899999999999999999999999999999999999999999999888 6799999999999997765 322
Q ss_pred CCCCCCCccccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhccccCchhHHHHH
Q 042999 897 IPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFI 976 (1006)
Q Consensus 897 ~~~~~~~~~s~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~i~~~~~w~~p~~t~~~~ 976 (1006)
..-+++....+....+. |++-++|+.+.++++.+++++.++.|+|+++.|..|.+|..++
T Consensus 560 ------------------~~~~~v~V~~pP~~nTv--EqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va 619 (683)
T PF04842_consen 560 ------------------KSFGEVTVRDPPPKNTV--EQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVA 619 (683)
T ss_pred ------------------CccceEEecCCCCccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHH
Confidence 11122322222223333 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHhhhhcc
Q 042999 977 GVCTVITLVLYVVPPKMVAVALGFYYLR 1004 (1006)
Q Consensus 977 ~~l~~~~~~l~~iP~r~i~l~~~~~~~~ 1004 (1006)
++++++|++++++|+||++++..++.|.
T Consensus 620 ~~Ll~~A~~LavvP~kyil~~v~l~~FT 647 (683)
T PF04842_consen 620 LALLGLAAVLAVVPFKYILLFVFLEVFT 647 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998877653
|
|
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=145.01 Aligned_cols=104 Identities=22% Similarity=0.298 Sum_probs=90.2
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE---CCEEEEeecccCCCCCeeccEEEEEEeC----CCcEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY---GKKWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLTVGV 689 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~---~~~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i~v 689 (1006)
..+.|.|+|++|+||+.++ . .|.+||||++.+ ++...||+++++++||.|||.|.|.+.. ....|.++|
T Consensus 14 ~~~~L~v~v~~a~~L~~~d---~-~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v 89 (125)
T cd08386 14 QESTLTLKILKAVELPAKD---F-SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQV 89 (125)
T ss_pred CCCEEEEEEEEecCCCCcc---C-CCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEE
Confidence 3468999999999998854 4 778999999998 3567899999999999999999998543 235799999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
||++.++ ++++||.+.|++.++..+...+.||+|.
T Consensus 90 ~d~d~~~-------~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 90 LDYDRFS-------RNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EeCCCCc-------CCcEeeEEEEecccccCCCCcceEEecC
Confidence 9999877 7899999999999999888788999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=144.90 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=86.8
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeC----CCcEEEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLTVGVF 690 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i~v~ 690 (1006)
.+.|+|+|++|+||++++ ...|.+||||++.+. .+..||+++++++||+|||+|.|.... ....|.|.||
T Consensus 15 ~~~L~V~Vi~a~~L~~~~---~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~ 91 (128)
T cd08388 15 KKALLVNIIECRDLPAMD---EQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVL 91 (128)
T ss_pred CCEEEEEEEEeECCCCCC---CCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEE
Confidence 468999999999999864 313789999999985 456799999999999999999995332 2347999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCC--ceEeeEEEee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENN--KVYTTSYPLL 731 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~ 731 (1006)
|+|.++ +|++||++.|+|+++... ++...|.+|.
T Consensus 92 d~d~~~-------~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 92 SFDRYS-------RDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EcCCCC-------CCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 999876 899999999999998654 6778999884
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=145.62 Aligned_cols=103 Identities=22% Similarity=0.288 Sum_probs=86.3
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeC----CCcEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLTV 687 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i 687 (1006)
..|.|.|+|++|+||++++ . .+.+||||++.+++ ...||+++++++||+|||+|.|++.. ....|.|
T Consensus 14 ~~~~L~V~vi~a~~L~~~~---~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~ 89 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRD---D-GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEV 89 (125)
T ss_pred CCCEEEEEEEEecCCCCcC---C-CCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEE
Confidence 3478999999999998864 4 77899999999864 57799999999999999999999755 3568999
Q ss_pred EEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 688 GVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 688 ~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
+|||++..+ .|++||++.++|.+.... ....||+|.
T Consensus 90 ~V~d~~~~~-------~~~~iG~~~i~l~~~~~~-~~~~W~~L~ 125 (125)
T cd04031 90 TVWDYDRDG-------ENDFLGEVVIDLADALLD-DEPHWYPLQ 125 (125)
T ss_pred EEEeCCCCC-------CCcEeeEEEEeccccccc-CCcceEECc
Confidence 999999876 789999999999983322 226899983
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=145.77 Aligned_cols=118 Identities=19% Similarity=0.292 Sum_probs=96.7
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC----------CcEEEEEE
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP----------CTVLTVGV 689 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~----------~~~l~i~v 689 (1006)
.|+|+|++|++|+++| . .|.+||||++.+++...||+++++|+||.|||.|.|++... ...|.|+|
T Consensus 2 ~l~v~V~~a~~L~~~d---~-~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V 77 (135)
T cd04017 2 QLRAYIYQARDLLAAD---K-SGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL 77 (135)
T ss_pred EEEEEEEEeecCcCCC---C-CCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence 5899999999998865 4 78999999999999999999999999999999999986431 24699999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEE-EcccccC---CceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 690 FDNWRMFADASEERPDYRIGKIRI-RVSTLEN---NKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i-~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
||+|..+ +|++||++.+ ++..+.. +.....||+|... | ...|+|.+++.+..
T Consensus 78 ~d~d~~~-------~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~---~-~~~Geil~~~~~~~ 133 (135)
T cd04017 78 FDQDSVG-------KDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG---G-QSAGELLAAFELIE 133 (135)
T ss_pred EeCcCCC-------CCccceEEEeeeeeecccCCCCCCCceEEEeecC---C-CchhheeEEeEEEE
Confidence 9999876 7899999997 4444442 3456799999632 2 24599999998863
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-16 Score=146.31 Aligned_cols=107 Identities=28% Similarity=0.483 Sum_probs=90.6
Q ss_pred cccEEEEEEEEecCCCCCCC-CCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDG-QGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~-~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|+|++|+||+.++. .|.+||||++++. ..++||+++++++||+|||+|.|.+.... +....|.|+||
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~-l~~~~L~~~V~ 91 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ-LETRTLQLSVW 91 (125)
T ss_pred CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH-hCCCEEEEEEE
Confidence 46789999999999998875 4789999999994 23589999999999999999999986532 23568999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
|++.. +++++||++.+++.++ ........|++|+
T Consensus 92 d~~~~-----~~~~~lG~~~i~l~~~-~~~~~~~~w~~l~ 125 (125)
T cd04029 92 HYDRF-----GRNTFLGEVEIPLDSW-NFDSQHEECLPLH 125 (125)
T ss_pred ECCCC-----CCCcEEEEEEEeCCcc-cccCCcccEEECc
Confidence 99998 7999999999999995 5555667899984
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.5e-16 Score=179.48 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=95.2
Q ss_pred CCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccccc
Q 042999 641 KGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLE 719 (1006)
Q Consensus 641 ~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 719 (1006)
.++|||||+|.++++ ..||+++++++||+|||+|.|++.++.+.|+|+|||+|.++ +++||++.|||.++.
T Consensus 74 ~~tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g--------aD~IG~a~IPL~~L~ 145 (868)
T PLN03008 74 VITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG--------AQIIGTAKIPVRDIA 145 (868)
T ss_pred cCCCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC--------CceeEEEEEEHHHcC
Confidence 357899999999876 56999999999999999999999998889999999999986 579999999999999
Q ss_pred CCceEeeEEEeeeeccCCcccccEEEEEEEEecCC
Q 042999 720 NNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPS 754 (1006)
Q Consensus 720 ~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~~ 754 (1006)
.|...+.|++|.+...+..+..|+|+|+++|.+-.
T Consensus 146 ~Ge~vd~Wl~Ll~~~~kp~k~~~kl~v~lqf~pv~ 180 (868)
T PLN03008 146 SGERISGWFPVLGASGKPPKAETAIFIDMKFTPFD 180 (868)
T ss_pred CCCceEEEEEccccCCCCCCCCcEEEEEEEEEEcc
Confidence 99988999999987665555668999999999763
|
|
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=143.97 Aligned_cols=119 Identities=25% Similarity=0.390 Sum_probs=98.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEC-------------CeEEEeeCcCCCCCCee-eeEEEEEeeCCCCCCCceE
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFD-------------GQRKRTSTKFRDLNPVW-NEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-------------~~~~kT~~~~~t~nP~w-ne~f~f~~~~~~~~~~~~L 82 (1006)
...|++++|+||+ ++..|.+||||++.+. +++++|+++++++||+| ||+|.|.+.. .+.|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-----~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-----TDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-----CCEE
Confidence 4679999999997 7778999999999994 24689999999999999 9999999864 4589
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCC--ceeEEEEceecCCceeeeEEEEEEE
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGD--EGLVYFPLEKKSVFSWIRGEIGLRI 143 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~--~~~~w~~L~~~~~~~~~~G~i~l~~ 143 (1006)
.|+|||++... ....+++||++.+++.+++..+. ...+|++|.+++..+.++|+|.+.+
T Consensus 76 ~v~V~D~~~~~--~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKS--RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCC--CccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence 99999986540 00137999999999999865543 3568999999988889999999876
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=144.86 Aligned_cols=116 Identities=27% Similarity=0.431 Sum_probs=100.0
Q ss_pred ccEEEEEEEEecCCCCCCC----------CCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEE
Q 042999 15 VRKLVVEVVDARDLLPKDG----------QGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELE 83 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~----------~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~ 83 (1006)
.|.|+|+|++|++|...+. .|.+||||++.+++++ .+|+++++++||.|||+|.|.+.. ...|.
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-----~~~l~ 77 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-----GRNLE 77 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-----CCEEE
Confidence 4679999999999998875 2689999999999765 799999999999999999999974 46899
Q ss_pred EEEEeCCCCCCCCCCCCceeEEEEEeCeeeeee-CCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 84 IEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARR-GDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 84 i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~-~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
|.|||++.. +.+++||.+.++++++... +.....|++|.+ .|+|++++.|..
T Consensus 78 ~~v~d~~~~-----~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~l~l~~~~~~ 130 (132)
T cd04014 78 LTVFHDAAI-----GPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-------QGKLHVKIELKG 130 (132)
T ss_pred EEEEeCCCC-----CCCceEEEEEEEhHHhcccCCCcccEEEEccC-------CcEEEEEEEEec
Confidence 999999988 6899999999999997553 455678999973 699999998865
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.3e-16 Score=140.61 Aligned_cols=103 Identities=32% Similarity=0.448 Sum_probs=89.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
.|.|+|++|++|+..+..+.+||||+++++++.++|++++++.||+|||.|.|.+..+. ...|.|+|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~v~v~d~~~----- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPE---NQELEIEVKDDKT----- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCC---CCEEEEEEEECCC-----
Confidence 48899999999999988899999999999999999999999999999999999998753 4589999999753
Q ss_pred CCCCceeEEEEEeCeeeeeeC-CceeEEEEceecC
Q 042999 97 GRKNHFLGRVKLCGSQFARRG-DEGLVYFPLEKKS 130 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~-~~~~~w~~L~~~~ 130 (1006)
+++||++.+++.++.... .....||+|.+++
T Consensus 73 ---~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 73 ---GKSLGSLTLPLSELLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred ---CCccEEEEEEHHHhhccccceeeeeEecCCCC
Confidence 589999999999976543 3456899998654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=144.80 Aligned_cols=103 Identities=21% Similarity=0.257 Sum_probs=89.6
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~ 688 (1006)
..+.|.|+|++|+||++++ . .+.+||||++.+. ....||++++++.||+|||+|.|.+... ...|.|.
T Consensus 14 ~~~~L~V~vi~a~~L~~~~---~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~ 89 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCD---S-SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVA 89 (127)
T ss_pred CCCEEEEEEEEEECCCCcc---C-CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEE
Confidence 3468999999999998864 4 7889999999985 4678999999999999999999998642 4689999
Q ss_pred EEECCCC--CcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 689 VFDNWRM--FADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 689 v~d~~~~--~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
|||++.+ + +|++||.+.|+|.++..+.....||+|
T Consensus 90 v~~~~~~~~~-------~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 90 VKNSKSFLSR-------EKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EEECCcccCC-------CCceEEEEEEecccccccCCccceEEC
Confidence 9999875 3 789999999999999877777899998
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=147.32 Aligned_cols=105 Identities=24% Similarity=0.297 Sum_probs=87.8
Q ss_pred EEEEEEeeccCCccCccCC-----------CCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC--CcEEE
Q 042999 620 ILELGILGARGLLPMKTKN-----------GGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP--CTVLT 686 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d-----------~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~--~~~l~ 686 (1006)
.|.|+|++|++|++||... . .+.+||||+|.++++..||+++++++||+|||+|.|++..+ ...|.
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~-~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~ 79 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEK-KELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIK 79 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCC-CCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEE
Confidence 3789999999999987311 1 35799999999999999999999999999999999998653 56899
Q ss_pred EEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCce-------EeeEEEeee
Q 042999 687 VGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKV-------YTTSYPLLV 732 (1006)
Q Consensus 687 i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~L~~ 732 (1006)
|+|||+|..+ +|++||++.|++.++..... -..|+.|.+
T Consensus 80 ~~v~D~d~~~-------~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 80 IQIRDWDRVG-------NDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEEECCCCC-------CCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 9999999887 89999999999998866442 136666654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.2e-16 Score=142.21 Aligned_cols=105 Identities=30% Similarity=0.442 Sum_probs=90.7
Q ss_pred EEEEEEEecCCCCCCC-CCCCCcEEEEEECCeEEEeeCcCCCCCCee-eeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDG-QGSSSPYVIADFDGQRKRTSTKFRDLNPVW-NEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~-~g~~dPyv~v~~~~~~~kT~~~~~t~nP~w-ne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
|.|+|++|++|+.++. .|.+||||++.+++++++|+++++++||.| ||+|.|.+.... +....|.|+|||++.+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~-l~~~~l~i~V~d~d~~--- 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE-LQDEPLQIRVMDHDTY--- 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHH-cCCCeEEEEEEeCCCC---
Confidence 6799999999998884 688999999999999999999999999999 999999987643 2256899999999998
Q ss_pred CCCCCceeEEEEEeCeeeeee--CCceeEEEEcee
Q 042999 96 SGRKNHFLGRVKLCGSQFARR--GDEGLVYFPLEK 128 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L~~ 128 (1006)
+++++||++.+++.++... ......||+|.+
T Consensus 77 --~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 --SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred --CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 7899999999999997653 233557999864
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-15 Score=139.63 Aligned_cols=93 Identities=25% Similarity=0.378 Sum_probs=82.0
Q ss_pred cEEEEEEEEecCCCCCCC----CCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 16 RKLVVEVVDARDLLPKDG----QGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~----~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
|.|.|+|++|++|+..+. ++.+||||++.++++.+||+++++++||+|||.|.|.+..... ...|.|+|||++.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~--~~~L~~~V~D~d~ 78 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEK--NFDIQFKVLDKDK 78 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccC--CCEEEEEEEECCC
Confidence 589999999999998763 2458999999999999999999999999999999999876431 4589999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeee
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFAR 115 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~ 115 (1006)
. ++|++||++.++|++++.
T Consensus 79 ~-----~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 79 F-----SFNDYVATGSLSVQELLN 97 (108)
T ss_pred C-----CCCcceEEEEEEHHHHHh
Confidence 8 799999999999999754
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=144.62 Aligned_cols=106 Identities=23% Similarity=0.472 Sum_probs=89.4
Q ss_pred ccEEEEEEEEecCCCCCCCC-CCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 15 VRKLVVEVVDARDLLPKDGQ-GSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
.+.|.|+|++|+||++++.. |.+||||++++. ..++||++++++.||+|||+|.|.+... .+....|.+.|||
T Consensus 14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~-~l~~~~L~v~V~~ 92 (128)
T cd08392 14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEAD-LLSSRQLQVSVWH 92 (128)
T ss_pred CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHH-HhCCcEEEEEEEe
Confidence 46899999999999999875 899999999995 3468999999999999999999998653 2335789999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeee--CCceeEEEEc
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARR--GDEGLVYFPL 126 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~--~~~~~~w~~L 126 (1006)
.+.+ +++++||++.|+|+++--. +.....||+|
T Consensus 93 ~~~~-----~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 93 SRTL-----KRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred CCCC-----cCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9998 7899999999999996222 2345589988
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=143.11 Aligned_cols=107 Identities=20% Similarity=0.233 Sum_probs=90.6
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC------CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD------GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~------~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|+|++|+||.+++..|.+||||++++- ..+++|+++++++||+|||+|.|.+... ++.+..|.|.||
T Consensus 12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~-~L~~~~L~~~V~ 90 (124)
T cd08680 12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISST-KLYQKTLQVDVC 90 (124)
T ss_pred CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHH-HhhcCEEEEEEE
Confidence 356899999999999999888999999999983 2479999999999999999999998763 344789999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
|++.. +++++||.+.++++++-..+.....||.|
T Consensus 91 ~~~~~-----~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 91 SVGPD-----QQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred eCCCC-----CceeEEEEEEEEhhhccCCCccccccccC
Confidence 99988 78999999999999962333335578875
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=145.98 Aligned_cols=92 Identities=29% Similarity=0.488 Sum_probs=84.6
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCc
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFA 697 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 697 (1006)
+|.|+|+|++|+||+..+ .+.+||||+++++++..||+++++++||+|||+|.|.+.++...|.|+|||++.++
T Consensus 1 ~G~L~V~Vi~a~nL~~~d-----~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~- 74 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRD-----FTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFS- 74 (145)
T ss_pred CeEEEEEEEeeECCCCCC-----CCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCC-
Confidence 589999999999998754 35799999999999999999999999999999999999999889999999999987
Q ss_pred CCCCCCCCceeEEEEEEcccccCC
Q 042999 698 DASEERPDYRIGKIRIRVSTLENN 721 (1006)
Q Consensus 698 ~~~~~~~d~~lG~~~i~l~~l~~~ 721 (1006)
+|++||.+.+++.++...
T Consensus 75 ------~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 75 ------KDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred ------CCCEEEEEEEEHHHhhhh
Confidence 899999999999987643
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=141.40 Aligned_cols=95 Identities=24% Similarity=0.346 Sum_probs=84.1
Q ss_pred CCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeC--CCcEEEEEEEEC
Q 042999 615 KPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD--PCTVLTVGVFDN 692 (1006)
Q Consensus 615 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~--~~~~l~i~v~d~ 692 (1006)
+..+|.|+|+|++|+||+. +. .|.+||||+|.++++.+||+++++++||+|||+|.|.... ....|+|+|||+
T Consensus 24 ~~~~~~L~V~V~~A~~L~~----d~-~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~ 98 (127)
T cd04032 24 RRGLATLTVTVLRATGLWG----DY-FTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDR 98 (127)
T ss_pred cCCcEEEEEEEEECCCCCc----Cc-CCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeC
Confidence 4678999999999999963 34 7789999999999999999999999999999999998544 467999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCC
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENN 721 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~ 721 (1006)
|.++ +|++||++.++|.....+
T Consensus 99 d~~s-------~dd~IG~~~i~l~~~~~~ 120 (127)
T cd04032 99 DNGW-------DDDLLGTCSVVPEAGVHE 120 (127)
T ss_pred CCCC-------CCCeeEEEEEEecCCcee
Confidence 9987 899999999999976644
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.63 E-value=4e-15 Score=141.70 Aligned_cols=114 Identities=20% Similarity=0.276 Sum_probs=96.4
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC---EEEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK---KWVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRM 695 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~---~~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~ 695 (1006)
.|+|+|++|++|++++ . .|.+||||++.+++ ...||+++.+++||.|||+|.|.+... ...|.|+|||++..
T Consensus 2 ~~~V~v~~a~~L~~~~---~-~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~ 77 (126)
T cd04043 2 LFTIRIVRAENLKADS---S-NGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFV 77 (126)
T ss_pred EEEEEEEEeECCCCCC---C-CCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCC
Confidence 5899999999998854 4 78999999999864 467999999999999999999999874 56899999999987
Q ss_pred CcCCCCCCCCceeEEEEEEcccccC---CceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 696 FADASEERPDYRIGKIRIRVSTLEN---NKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
+ ++++||++.++|..+.. +...+.|++|.. .|+|++++.+..
T Consensus 78 ~-------~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--------~g~i~l~~~~~~ 122 (126)
T cd04043 78 G-------KHDLCGRASLKLDPKRFGDDGLPREIWLDLDT--------QGRLLLRVSMEG 122 (126)
T ss_pred C-------CCceEEEEEEecCHHHcCCCCCCceEEEEcCC--------CCeEEEEEEEee
Confidence 6 79999999999987643 335578999942 399999988864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-15 Score=141.59 Aligned_cols=104 Identities=30% Similarity=0.416 Sum_probs=87.7
Q ss_pred cEEEEEEEEecCCCCCCCC-CCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQ-GSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
|.|+|+|++|++|+..+.. |.+||||++++. ...++|+++++++||+|||+|.|.+...+......|.|+|||++.
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~ 80 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR 80 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence 5899999999999999987 899999999984 345899999999999999999998865422224689999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
+ ++|++||++.+++.+++.. ..|+++..
T Consensus 81 ~-----~~dd~lG~~~i~l~~l~~~----~~~~~~~~ 108 (111)
T cd04041 81 F-----TADDRLGRVEIDLKELIED----RNWMGRRE 108 (111)
T ss_pred C-----CCCCcceEEEEEHHHHhcC----CCCCcccc
Confidence 8 7899999999999997532 24877653
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=141.58 Aligned_cols=104 Identities=19% Similarity=0.289 Sum_probs=88.9
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..|.|.|+|++|+||++++. . .|.+||||++.+. ....||++++++.||+|||+|.|.+.. ....|.|.
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~--~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~ 88 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADE--K-KKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLS 88 (123)
T ss_pred CCCEEEEEEEEecCCCCcCC--C-CCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 45789999999999988641 3 6789999999873 146799999999999999999999865 25689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
|||++.++ ++++||.+.++|.++..+...+.||+|
T Consensus 89 v~d~~~~~-------~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 89 VWHHDRFG-------RNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEeCCCCc-------CCceeeEEEEecccccccCCCccEEEC
Confidence 99999876 789999999999999777667899987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.8e-15 Score=143.97 Aligned_cols=107 Identities=31% Similarity=0.525 Sum_probs=89.6
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|++|..++..+.+||||++.+.+ .+++|+++++++||+|||+|.|.+....+.....|.|+|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d 93 (125)
T cd04031 14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD 93 (125)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence 3578999999999999999889999999999963 56899999999999999999998654322335689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
++.. +++++||++.+++++... .....||+|+
T Consensus 94 ~~~~-----~~~~~iG~~~i~l~~~~~--~~~~~W~~L~ 125 (125)
T cd04031 94 YDRD-----GENDFLGEVVIDLADALL--DDEPHWYPLQ 125 (125)
T ss_pred CCCC-----CCCcEeeEEEEecccccc--cCCcceEECc
Confidence 9998 789999999999998322 2235799985
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-15 Score=142.21 Aligned_cols=118 Identities=25% Similarity=0.344 Sum_probs=93.6
Q ss_pred EEEEEeeccC--CccCccCCCCCCCCCeEEEEEE-----CCEEEEeecccCCCCCeeccEEEEEEeCC---------CcE
Q 042999 621 LELGILGARG--LLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYTWQVYDP---------CTV 684 (1006)
Q Consensus 621 L~v~v~~a~~--L~~~~~~d~~~g~sdpyv~v~~-----~~~~~rT~~~~~~~nP~wne~~~~~v~~~---------~~~ 684 (1006)
..++|..|.| |++.+ . .+.+||||++.+ +.+..||+++++|+||+|||+|.|.|... ...
T Consensus 4 ~el~i~~~~~~~l~~~~---~-~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~ 79 (155)
T cd08690 4 IELTIVRCIGIPLPSGW---N-PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG 79 (155)
T ss_pred eEEEEEEeeccccCCCc---C-CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc
Confidence 3455555555 66643 3 778999999986 35689999999999999999999999654 346
Q ss_pred EEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcc-cccEEEEEEEEec
Q 042999 685 LTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLK-KMGEIELAVRFVC 752 (1006)
Q Consensus 685 l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~l~l~~~~~~ 752 (1006)
|.|+|||++.+. .+|++||++.|+|..+..+.....|++|.. |.+ ..|.|+++++...
T Consensus 80 L~~~V~d~~~f~------~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~----~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 80 LKFEVYHKGGFL------RSDKLLGTAQVKLEPLETKCEIHESVDLMD----GRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEEEEeCCCcc------cCCCeeEEEEEEcccccccCcceEEEEhhh----CCCCcCCEEEEEEEecC
Confidence 999999999863 169999999999999987766678999974 222 3499999999864
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=143.27 Aligned_cols=107 Identities=25% Similarity=0.384 Sum_probs=88.3
Q ss_pred ccEEEEEEEEecCCCCCCCC-CCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEE-eeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQ-GSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFI-VSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~-~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|+||+.++.. |.+||||++.+. .+++||+++++++||+|||+|.|. +.. .......|.|+|||+
T Consensus 15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~-~~~~~~~L~~~V~d~ 93 (128)
T cd08388 15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPY-NQLQDLSLHFAVLSF 93 (128)
T ss_pred CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCH-HHhCCCEEEEEEEEc
Confidence 56899999999999998875 899999999995 456899999999999999999994 432 222245799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeee-eeCCceeEEEEce
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFA-RRGDEGLVYFPLE 127 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~-~~~~~~~~w~~L~ 127 (1006)
+.+ +++++||++.++++++- ..+.....|.+|+
T Consensus 94 d~~-----~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 94 DRY-----SRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCC-----CCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 998 78999999999999962 2234566898885
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-15 Score=143.87 Aligned_cols=113 Identities=24% Similarity=0.313 Sum_probs=95.4
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeeccc-CCCCCeeccEEEEEEeCC-----CcEEEEEEEEC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTIT-DCFDPRWNEQYTWQVYDP-----CTVLTVGVFDN 692 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~-~~~nP~wne~~~~~v~~~-----~~~l~i~v~d~ 692 (1006)
+|+|+|++|++|+..+ . .+++||||++++++ +..+|+++. ++.||.|||.|.|.+.++ ...|.|+|||+
T Consensus 1 ~L~V~V~sA~~L~~~~---~-~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 1 TLEITIISAEDLKNVN---L-FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred CEEEEEEEcccCCCCC---c-ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 4899999999998754 4 78999999999988 889999986 589999999999999877 57899999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCce-----EeeEEEeeeeccCCcccccEEEE
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKV-----YTTSYPLLVLLRTGLKKMGEIEL 746 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~g~~~~G~l~l 746 (1006)
+.++ +|++||.+.|+|.++..+.. ...||+|.... | +..|.|++
T Consensus 77 ~~~~-------~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g-~~~G~~~~ 125 (125)
T cd04051 77 RPSL-------GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--G-KPQGVLNF 125 (125)
T ss_pred CCCC-------CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--C-CcCeEEeC
Confidence 9876 79999999999999986543 46899997643 3 33498874
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-15 Score=138.62 Aligned_cols=100 Identities=18% Similarity=0.243 Sum_probs=87.9
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCC-----CcEEEEEEEEC
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDP-----CTVLTVGVFDN 692 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~-----~~~l~i~v~d~ 692 (1006)
-..|+|+|++|++|+ +|.+||||+++++++..+|++++++.||.|||+|.|.+..+ ...|.|+|||+
T Consensus 3 ~~~l~V~v~~a~~L~--------~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~ 74 (111)
T cd04011 3 DFQVRVRVIEARQLV--------GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDS 74 (111)
T ss_pred cEEEEEEEEEcccCC--------CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcC
Confidence 357899999999995 45799999999999999999999999999999999998654 35899999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCC---ceEeeEEEeee
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENN---KVYTTSYPLLV 732 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~---~~~~~~~~L~~ 732 (1006)
+.++ +|++||.+.|+|+++..+ .....||+|.+
T Consensus 75 ~~~~-------~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 75 RSLR-------SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cccc-------cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 9887 789999999999999665 45688999954
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-15 Score=140.30 Aligned_cols=119 Identities=24% Similarity=0.298 Sum_probs=101.3
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCc
Q 042999 22 VVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNH 101 (1006)
Q Consensus 22 v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~ 101 (1006)
|++|++|+. ..|.+||||++.+++.+++|++++++.||+|||+|.|.+.... .....|.|+|||++.. ++++
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~-----~~d~ 73 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKV-----GRNR 73 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCC-----CCCc
Confidence 789999988 5789999999999999999999999999999999999997642 2267899999999998 7899
Q ss_pred eeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecCc
Q 042999 102 FLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDELS 150 (1006)
Q Consensus 102 ~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~ 150 (1006)
+||++.++++++. .+.....|++|.+.+.. ...|+|++++.|.+...
T Consensus 74 ~iG~~~~~l~~l~-~~~~~~~~~~L~~~~~~-~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 74 LIGSATVSLQDLV-SEGLLEVTEPLLDSNGR-PTGATISLEVSYQPPDG 120 (127)
T ss_pred eEEEEEEEhhHcc-cCCceEEEEeCcCCCCC-cccEEEEEEEEEeCCCC
Confidence 9999999999974 45556689999865432 24799999999998874
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-15 Score=142.35 Aligned_cols=103 Identities=24% Similarity=0.363 Sum_probs=92.4
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccC-CCCCeeccEEEEEEeCC----CcEEEEEEEECC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITD-CFDPRWNEQYTWQVYDP----CTVLTVGVFDNW 693 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~-~~nP~wne~~~~~v~~~----~~~l~i~v~d~~ 693 (1006)
|.|+|+|++|+||++++ . .+++||||++++++...+|+++.+ +.||.|||.|.|.+..+ ...|.|+|||++
T Consensus 1 g~L~V~V~~A~~L~~~~---~-~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 1 GTLEVLLISAKGLQDTD---F-LGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred CeEEEEEEecCCCCCCC---C-CCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 78999999999998754 4 778999999999999999999885 89999999999999886 568999999999
Q ss_pred CCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 694 RMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 694 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
.++ +|++||.+.+++.++..+...+.||+|..
T Consensus 77 ~~~-------~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 77 NFS-------DDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred cCC-------CCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 876 78999999999999987766789999965
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-15 Score=147.33 Aligned_cols=106 Identities=18% Similarity=0.302 Sum_probs=90.9
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-----CCEEEEeecccCCCCCeeccEEEEEEeC----CCcEEE
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLT 686 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-----~~~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~ 686 (1006)
...|.|.|+|++|+||++++ . .|.+||||++.+ +....||+++++++||.|||.|.|.+.. ....|.
T Consensus 24 ~~~g~L~V~Vi~A~nL~~~d---~-~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~ 99 (162)
T cd04020 24 PSTGELHVWVKEAKNLPALK---S-GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLE 99 (162)
T ss_pred CCCceEEEEEEeeeCCCCCC---C-CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEE
Confidence 46899999999999999864 4 788999999987 2457899999999999999999998643 335799
Q ss_pred EEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 687 VGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 687 i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|+|||++.++ +|++||.+.+++.++........||.|.+
T Consensus 100 i~V~d~d~~~-------~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 100 LTVWDHDKLS-------SNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred EEEEeCCCCC-------CCceEEEEEEeCCccccCCCccccccCCh
Confidence 9999999886 79999999999999876656688988854
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=141.02 Aligned_cols=105 Identities=25% Similarity=0.378 Sum_probs=87.9
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|+||++++ .|.+||||++++.. .+++|++++++.||+|||+|.|.+.... . ...|.|.|||
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~-~-~~~l~v~V~~ 86 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERD-Y-QKRLLVTVWN 86 (119)
T ss_pred cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHH-h-CCEEEEEEEC
Confidence 3578999999999999998 78999999999952 3579999999999999999999986532 2 3468999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
++... .++++||.+.+++.++. .+.....||.|
T Consensus 87 ~~~~~----~~~~~lG~~~i~l~~~~-~~~~~~~Wy~l 119 (119)
T cd08685 87 KLSKS----RDSGLLGCMSFGVKSIV-NQKEISGWYYL 119 (119)
T ss_pred CCCCc----CCCEEEEEEEecHHHhc-cCccccceEeC
Confidence 99871 24789999999999975 55556789976
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.1e-15 Score=139.98 Aligned_cols=118 Identities=24% Similarity=0.333 Sum_probs=99.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
.|.|+|++|++|+..+..+.+||||++.+++ ..++|+++++++||.|||+|.|.+.... ...|.|+|||++..
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~---~~~L~i~v~d~d~~- 77 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGE---PLWISATVWDRSFV- 77 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCC---CCEEEEEEEECCCC-
Confidence 6899999999999999889999999999864 3589999999999999999999988742 56899999999988
Q ss_pred CCCCCCCceeEEEEEeCeeeee-e-CCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 94 NGSGRKNHFLGRVKLCGSQFAR-R-GDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~-~-~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
+++++||++.++++.+.. . +.....|++|.+ .|++++++.+....
T Consensus 78 ----~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-------~g~i~l~~~~~~~~ 124 (126)
T cd04043 78 ----GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT-------QGRLLLRVSMEGER 124 (126)
T ss_pred ----CCCceEEEEEEecCHHHcCCCCCCceEEEEcCC-------CCeEEEEEEEeeec
Confidence 689999999999987532 2 334568999964 68999998887653
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.2e-15 Score=142.11 Aligned_cols=107 Identities=25% Similarity=0.365 Sum_probs=91.8
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
.+.|.|+|++|++|+.++..+.+||||++.+. +++++|++++++.||+|||+|.|.+..........|.|+|||++.
T Consensus 15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~ 94 (125)
T cd08386 15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR 94 (125)
T ss_pred CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence 56899999999999999988999999999993 567899999999999999999998544322235679999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
+ +++++||++.++++++ ..+.....|+.|.
T Consensus 95 ~-----~~~~~iG~~~i~l~~l-~~~~~~~~W~~l~ 124 (125)
T cd08386 95 F-----SRNDPIGEVSLPLNKV-DLTEEQTFWKDLK 124 (125)
T ss_pred C-----cCCcEeeEEEEecccc-cCCCCcceEEecC
Confidence 8 7899999999999996 5566677899985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-15 Score=141.70 Aligned_cols=106 Identities=22% Similarity=0.407 Sum_probs=91.6
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
.+.|.|+|++|++|+.++..|.+||||++.+. ...++|+++++++||+|||+|.|.+.... +....|.|+|||++.
T Consensus 15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~-l~~~~l~i~V~d~~~ 93 (124)
T cd08387 15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQE-LPKRTLEVLLYDFDQ 93 (124)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHH-hCCCEEEEEEEECCC
Confidence 56899999999999999988999999999994 45689999999999999999999987632 224689999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
+ +++++||++.++++++ ..+.....|++|+
T Consensus 94 ~-----~~~~~iG~~~i~l~~~-~~~~~~~~W~~l~ 123 (124)
T cd08387 94 F-----SRDECIGVVELPLAEV-DLSEKLDLWRKIQ 123 (124)
T ss_pred C-----CCCceeEEEEEecccc-cCCCCcceEEECc
Confidence 8 7899999999999996 4445667899985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-15 Score=141.33 Aligned_cols=108 Identities=32% Similarity=0.437 Sum_probs=91.5
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..+.|.|+|++|+||++++..|.+||||++.+. .++++|+++++ +||+|||+|.|.......+....|.|.|||++
T Consensus 14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~ 92 (124)
T cd08389 14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE 92 (124)
T ss_pred CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence 356899999999999999988999999998873 46789999888 99999999999833323344678999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
.+ +++++||++.++|+++ ..+.....|++|++
T Consensus 93 ~~-----~~~~~lG~~~i~L~~l-~~~~~~~~w~~L~p 124 (124)
T cd08389 93 RM-----RKERLIGEKVVPLSQL-NLEGETTVWLTLEP 124 (124)
T ss_pred Cc-----ccCceEEEEEEecccc-CCCCCceEEEeCCC
Confidence 98 7899999999999996 55666778999863
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.8e-15 Score=138.89 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=87.6
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEE-EeC---CCcEEEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQ-VYD---PCTVLTVGVF 690 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~-v~~---~~~~l~i~v~ 690 (1006)
.+.|.|+|++|+||++++ . +|.+||||.+.+. .++.||++.++ .||+|||+|.|+ +.. ....|.+.||
T Consensus 15 ~~~L~V~Vi~a~nL~~~~---~-~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~ 89 (124)
T cd08389 15 ARKLTVTVIRAQDIPTKD---R-GGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY 89 (124)
T ss_pred CCEEEEEEEEecCCCchh---c-CCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence 468999999999999865 4 7789999998762 45779998887 999999999998 443 3568999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|++.++ ++++||.+.|+|+++..+.....||+|.
T Consensus 90 ~~~~~~-------~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 90 GVERMR-------KERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred ECCCcc-------cCceEEEEEEeccccCCCCCceEEEeCC
Confidence 999887 7999999999999998888889999984
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-15 Score=139.89 Aligned_cols=103 Identities=28% Similarity=0.348 Sum_probs=91.6
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCc
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFA 697 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 697 (1006)
|.|+|+|++|++|++.+ . .|.+||||++.+++ ...+|+++.++.||.|||.|.|++..+...|.|+|||++..+
T Consensus 1 g~L~V~Vi~a~~L~~~d---~-~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~- 75 (120)
T cd04045 1 GVLRLHIRKANDLKNLE---G-VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVG- 75 (120)
T ss_pred CeEEEEEEeeECCCCcc---C-CCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCC-
Confidence 78999999999998854 4 78999999999976 568999999999999999999999888889999999999887
Q ss_pred CCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 698 DASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 698 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
+|++||.+.+++.++..+ ..+.||-|.+.
T Consensus 76 ------~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~ 104 (120)
T cd04045 76 ------KDRSLGSVEINVSDLIKK-NEDGKYVEYDD 104 (120)
T ss_pred ------CCCeeeEEEEeHHHhhCC-CCCceEEecCC
Confidence 789999999999999877 44788888764
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.9e-15 Score=139.47 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=90.3
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVGVF 690 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~v~ 690 (1006)
..+.|.|+|++|+||++++. . .|.+||||++.+. .+..+|+++++++||+|||.|.|.+... ...|.|.||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~--~-~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~ 88 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTK--D-VAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVY 88 (123)
T ss_pred CCCEEEEEEEEecCCCCccC--C-CCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEE
Confidence 45789999999999988641 3 6789999999983 4567999999999999999999998652 458999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|++..+ ++++||++.++|+++........|++|.
T Consensus 89 d~~~~~-------~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 89 DVDRFS-------RHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ECCcCC-------CCcEEEEEEEeccceecCCCceEEEeCC
Confidence 999876 7899999999999998877778999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-15 Score=139.88 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=88.8
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC------CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEE
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG------KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLT 686 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~------~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~ 686 (1006)
+..|.|.|+|++|+||++++ . .|.+||||++.+- ..+.||+++++++||+|||+|.|++.. ....|.
T Consensus 11 ~~~~~L~V~V~~arnL~~~~---~-~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~ 86 (124)
T cd08680 11 SGDSSLVISVEQLRNLSALS---I-PENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQ 86 (124)
T ss_pred CCCCEEEEEEeEecCCcccc---c-CCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEE
Confidence 35678999999999999864 3 7789999999972 247899999999999999999999865 456899
Q ss_pred EEEEECCCCCcCCCCCCCCceeEEEEEEcccccCC-ceEeeEEEe
Q 042999 687 VGVFDNWRMFADASEERPDYRIGKIRIRVSTLENN-KVYTTSYPL 730 (1006)
Q Consensus 687 i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 730 (1006)
|+|||.+.++ ++++||.+.|+|.++... .....||+|
T Consensus 87 ~~V~~~~~~~-------~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 87 VDVCSVGPDQ-------QEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEEeCCCCC-------ceeEEEEEEEEhhhccCCCccccccccC
Confidence 9999999876 899999999999999654 346789976
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-15 Score=141.03 Aligned_cols=107 Identities=28% Similarity=0.409 Sum_probs=91.8
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..+.|.|+|++|++|+.++..|.+||||++.+. ...++|+++++++||+|||+|.|.+.... +....|.|+|||++
T Consensus 14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~-l~~~~l~~~V~d~d 92 (124)
T cd08385 14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSE-LGNKTLVFSVYDFD 92 (124)
T ss_pred CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHH-hCCCEEEEEEEeCC
Confidence 356899999999999999988999999999985 34689999999999999999999986521 22468999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
.+ +++++||++.++++++ ..+....+|++|.
T Consensus 93 ~~-----~~~~~lG~~~i~l~~~-~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RF-----SKHDLIGEVRVPLLTV-DLGHVTEEWRDLE 123 (124)
T ss_pred CC-----CCCceeEEEEEecCcc-cCCCCcceEEEcc
Confidence 98 7899999999999996 4466677899985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-15 Score=137.72 Aligned_cols=112 Identities=26% Similarity=0.428 Sum_probs=88.4
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEEECCCCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVFDNWRMF 696 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~d~~~~~ 696 (1006)
|+|+|++|+||+. .|.+||||+++++++ ..||+++++ .||.|||+|.|.+.. ....|.|.+||.+...
T Consensus 2 L~v~vi~a~~l~~-------~~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 2 LRLRILEAKNLPS-------KGTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKD 73 (117)
T ss_pred eEEEEEEecCCCc-------CCCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCC
Confidence 7899999999976 257999999999875 579999999 999999999999977 3456888888877544
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
++..+|++.|. .+..+...+.||+|......+ ...|+|+|+++|
T Consensus 74 -------~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 74 -------RDIVIGKVALS--KLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred -------CeeEEEEEEec--CcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 56677775554 455566678999998765433 345999999986
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-15 Score=142.92 Aligned_cols=103 Identities=19% Similarity=0.263 Sum_probs=91.2
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEEC----CEEEEeecccCCCCCeeccEEEEEEeCC---------------
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYG----KKWVRTRTITDCFDPRWNEQYTWQVYDP--------------- 681 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~----~~~~rT~~~~~~~nP~wne~~~~~v~~~--------------- 681 (1006)
|+|.|++|++|+.+ . .|.+||||++.++ +...||+++.++.||.|||+|.|++...
T Consensus 1 L~V~Vi~A~~L~~~----~-~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~ 75 (137)
T cd08675 1 LSVRVLECRDLALK----S-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDL 75 (137)
T ss_pred CEEEEEEccCCCcc----c-CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccc
Confidence 57999999999875 2 7789999999998 7889999999999999999999998775
Q ss_pred -CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeecc
Q 042999 682 -CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLR 735 (1006)
Q Consensus 682 -~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~ 735 (1006)
...|.|+|||++..+ ++++||++.|++.++........||+|.....
T Consensus 76 ~~~~l~i~V~d~~~~~-------~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 76 EKSELRVELWHASMVS-------GDDFLGEVRIPLQGLQQAGSHQAWYFLQPREA 123 (137)
T ss_pred cccEEEEEEEcCCcCc-------CCcEEEEEEEehhhccCCCcccceEecCCcCC
Confidence 358999999999876 79999999999999987777789999987653
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.60 E-value=5e-15 Score=137.37 Aligned_cols=105 Identities=26% Similarity=0.342 Sum_probs=88.8
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCC-CCCCceEEEEEEeCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPK-NMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~-~~~~~~L~i~V~d~d~~~ 93 (1006)
...|+|+|++|++|. .|.+||||++++++++++|++++++.||.|||+|.|.+..+. .+.+..|.|+|||++..
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~- 77 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL- 77 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc-
Confidence 568999999999997 578999999999999999999999999999999999976532 12245799999999998
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCC--ceeEEEEcee
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGD--EGLVYFPLEK 128 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~--~~~~w~~L~~ 128 (1006)
+++++||++.++++++..... ....|++|..
T Consensus 78 ----~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 78 ----RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ----ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 689999999999999754432 2458999864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.1e-15 Score=142.55 Aligned_cols=106 Identities=29% Similarity=0.476 Sum_probs=89.4
Q ss_pred EEEEEEEEecCCCCCCCC--------------CCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceE
Q 042999 17 KLVVEVVDARDLLPKDGQ--------------GSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~--------------g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L 82 (1006)
.|.|+|++|++|+.+|.. +.+||||+|.+++++.+|+++++++||+|||+|.|.+..+.. ...|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPL--CERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCc--CCEE
Confidence 378999999999998854 368999999999999999999999999999999999765321 4689
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCc------eeEEEEceec
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDE------GLVYFPLEKK 129 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~------~~~w~~L~~~ 129 (1006)
.|+|||+|.. ++|++||++.+++.++...+.. ...|+.|...
T Consensus 79 ~~~v~D~d~~-----~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~ 126 (151)
T cd04018 79 KIQIRDWDRV-----GNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGS 126 (151)
T ss_pred EEEEEECCCC-----CCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecC
Confidence 9999999998 7999999999999997554432 2378888654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.9e-15 Score=145.14 Aligned_cols=109 Identities=22% Similarity=0.368 Sum_probs=91.0
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|+||+.++..|.+||||++++. .++++|++++++.||+|||+|.|.+.....+.+..|.|+|||
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d 104 (162)
T cd04020 25 STGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWD 104 (162)
T ss_pred CCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEe
Confidence 468899999999999999988999999999983 356899999999999999999998644333335689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
++.+ +++++||++.++++++... .....|+.|..
T Consensus 105 ~d~~-----~~d~~lG~v~i~l~~~~~~-~~~~~w~~~~~ 138 (162)
T cd04020 105 HDKL-----SSNDFLGGVRLGLGTGKSY-GQAVDWMDSTG 138 (162)
T ss_pred CCCC-----CCCceEEEEEEeCCccccC-CCccccccCCh
Confidence 9998 7899999999999996433 34567887753
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=135.23 Aligned_cols=112 Identities=29% Similarity=0.375 Sum_probs=95.0
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCCCCcC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~ 698 (1006)
|+|+|++|++|++.+ . .|.+||||++.+++ +..+|+++.++.||.|||.|.|.+.. ....|.|+|||++..+
T Consensus 1 l~v~vi~a~~L~~~~---~-~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~-- 74 (115)
T cd04040 1 LTVDVISAENLPSAD---R-NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGG-- 74 (115)
T ss_pred CEEEEEeeeCCCCCC---C-CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCC--
Confidence 579999999998854 3 77899999999964 56799999999999999999999987 5678999999999876
Q ss_pred CCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEE
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIEL 746 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l 746 (1006)
++++||++.+++.++..+.....|++|... |..+.|.|.+
T Consensus 75 -----~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---g~~~~~~~~~ 114 (115)
T cd04040 75 -----KDDLLGSAYIDLSDLEPEETTELTLPLDGQ---GGGKLGAVFL 114 (115)
T ss_pred -----CCCceEEEEEEHHHcCCCCcEEEEEECcCC---CCccCceEEc
Confidence 799999999999999988888999999653 3334476654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.1e-15 Score=141.47 Aligned_cols=100 Identities=25% Similarity=0.467 Sum_probs=86.4
Q ss_pred CCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----------------------------EEEEeecccCC
Q 042999 615 KPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----------------------------KWVRTRTITDC 665 (1006)
Q Consensus 615 ~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----------------------------~~~rT~~~~~~ 665 (1006)
.++++.|.|+|++|+||+++| . .|.+||||++.+++ ...+|+++.++
T Consensus 24 ~~~~~~L~V~vi~a~~L~~~d---~-~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~t 99 (153)
T cd08676 24 EPPIFVLKVTVIEAKGLLAKD---V-NGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQT 99 (153)
T ss_pred CCCeEEEEEEEEeccCCcccC---C-CCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCC
Confidence 478999999999999999865 4 78999999999853 23689999999
Q ss_pred CCCeeccEEEEEEeCC-CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 666 FDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 666 ~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
+||.|||.|.|.+.+. ...|.|+|||++ |++||.+.++++++... ..+.||+|
T Consensus 100 lnP~WnE~F~f~v~~~~~~~L~i~V~D~d-----------d~~IG~v~i~l~~l~~~-~~d~W~~L 153 (153)
T cd08676 100 LNPVWNETFRFEVEDVSNDQLHLDIWDHD-----------DDFLGCVNIPLKDLPSC-GLDSWFKL 153 (153)
T ss_pred CCCccccEEEEEeccCCCCEEEEEEEecC-----------CCeEEEEEEEHHHhCCC-CCCCeEeC
Confidence 9999999999999774 568999999985 56999999999999843 35899987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=135.02 Aligned_cols=117 Identities=25% Similarity=0.368 Sum_probs=96.5
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCe-EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQ-RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
..|.|+|++|+ |...+..+.+||||+++++++ .++|+++++++||.|||+|.|.+.. ...|.|+|||++..
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-----~~~l~~~V~d~~~~-- 73 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-----QSTLEFKVWSHHTL-- 73 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-----CCEEEEEEEeCCCC--
Confidence 36899999998 555555788999999999887 7999999999999999999999864 46899999999998
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCc----eeEEEEceecCC-ceeeeEEEEEEE
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDE----GLVYFPLEKKSV-FSWIRGEIGLRI 143 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~----~~~w~~L~~~~~-~~~~~G~i~l~~ 143 (1006)
+++++||++.+++.+++..... ...|++|.+.+. .....|++.+.+
T Consensus 74 ---~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 74 ---KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred ---CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 7899999999999997644321 124888886553 346689998875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=138.46 Aligned_cols=118 Identities=21% Similarity=0.346 Sum_probs=98.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-eEEEeeCcC-CCCCCeeeeEEEEEeeCCCC-CCCceEEEEEEeCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG-QRKRTSTKF-RDLNPVWNEPLEFIVSDPKN-MDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-~~~kT~~~~-~t~nP~wne~f~f~~~~~~~-~~~~~L~i~V~d~d~~~ 93 (1006)
.|.|+|++|++|+..+..+.+||||++++++ ++++|++.. ++.||.|||.|.|.+..... .....|.|+|||++.+
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~- 79 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS- 79 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC-
Confidence 3889999999999998889999999999988 889999975 68999999999999877520 1146899999999997
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCc----eeEEEEceecCCceeeeEEEEE
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDE----GLVYFPLEKKSVFSWIRGEIGL 141 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~----~~~w~~L~~~~~~~~~~G~i~l 141 (1006)
+++++||.+.+++.++...... ...||+|.+.. ++..|+|++
T Consensus 80 ----~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~~G~~~~ 125 (125)
T cd04051 80 ----LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKPQGVLNF 125 (125)
T ss_pred ----CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCcCeEEeC
Confidence 6899999999999998655442 35899998754 455888864
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=137.87 Aligned_cols=109 Identities=31% Similarity=0.460 Sum_probs=91.0
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|+||+.++..+.+||||++.+. ..+++|++++++.||+|||+|.|.+.... +....|.|.|||
T Consensus 14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~-l~~~~l~i~v~~ 92 (127)
T cd04030 14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE-LKRRTLDVAVKN 92 (127)
T ss_pred CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH-hcCCEEEEEEEE
Confidence 357899999999999999988999999999995 45689999999999999999999986532 225689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
++.+. .+++++||++.+++.++ ..+.....||+|+
T Consensus 93 ~~~~~---~~~~~~iG~~~i~l~~l-~~~~~~~~W~~L~ 127 (127)
T cd04030 93 SKSFL---SREKKLLGQVLIDLSDL-DLSKGFTQWYDLT 127 (127)
T ss_pred CCccc---CCCCceEEEEEEecccc-cccCCccceEECc
Confidence 98741 04789999999999996 4445567899884
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=137.10 Aligned_cols=106 Identities=27% Similarity=0.516 Sum_probs=90.1
Q ss_pred cccEEEEEEEEecCCCCCC-CCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKD-GQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|+|++|+||+.++ ..+.+||||++.+. ..+++|++++++.||+|||+|.|.+.... +....|.|+||
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~-l~~~~l~i~v~ 90 (123)
T cd08521 12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQ-LETRTLQLSVW 90 (123)
T ss_pred CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHH-hCCCEEEEEEE
Confidence 4578999999999999988 67899999999984 14689999999999999999999987632 22568999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
|++.. +++++||++.++++++ ..+.....||+|
T Consensus 91 d~~~~-----~~~~~iG~~~i~l~~l-~~~~~~~~w~~l 123 (123)
T cd08521 91 HHDRF-----GRNTFLGEVEIPLDSW-DLDSQQSEWYPL 123 (123)
T ss_pred eCCCC-----cCCceeeEEEEecccc-cccCCCccEEEC
Confidence 99988 7899999999999996 455556789987
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-14 Score=135.84 Aligned_cols=109 Identities=21% Similarity=0.306 Sum_probs=93.8
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCC-CCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFR-DLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
|.|.|+|++|++|+..+..+.+||||+++++++.++|++..+ +.||.|||+|.|.+..........|.|+|||.+.+
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~-- 78 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF-- 78 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC--
Confidence 579999999999999888889999999999998899999874 89999999999999875322246899999999998
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
+++++||++.+++.+++. +.....|+.|.+.+
T Consensus 79 ---~~d~~iG~~~i~l~~l~~-~~~~~~~~~l~p~~ 110 (124)
T cd04049 79 ---SDDDFIGEATIHLKGLFE-EGVEPGTAELVPAK 110 (124)
T ss_pred ---CCCCeEEEEEEEhHHhhh-CCCCcCceEeeccc
Confidence 789999999999999755 34456799998754
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=137.77 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=80.7
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-------CEEEEeecccCCCCCeeccEEEEEEeCC-----CcEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-------KKWVRTRTITDCFDPRWNEQYTWQVYDP-----CTVL 685 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-------~~~~rT~~~~~~~nP~wne~~~~~v~~~-----~~~l 685 (1006)
.+.|.|+|++|++|++++ . .|.+||||+|.+. ....||+++++|+||+|||+|.|++... ...|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~---~-~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l 90 (133)
T cd04009 15 EQSLRVEILNARNLLPLD---S-NGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALL 90 (133)
T ss_pred CCEEEEEEEEeeCCCCcC---C-CCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEE
Confidence 468999999999998864 4 7889999999985 3478999999999999999999998752 4589
Q ss_pred EEEEEECCCCCcCCCCCCCCceeEEEEEEcccccC
Q 042999 686 TVGVFDNWRMFADASEERPDYRIGKIRIRVSTLEN 720 (1006)
Q Consensus 686 ~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 720 (1006)
.|+|||++..+ +|++||++.++|.++..
T Consensus 91 ~~~V~d~d~~~-------~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 91 LFTVKDYDLLG-------SNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEEEEecCCCC-------CCcEeEEEEEeHHHCCc
Confidence 99999999876 79999999999999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-14 Score=133.96 Aligned_cols=116 Identities=20% Similarity=0.304 Sum_probs=92.9
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~ 698 (1006)
.|.|+|++|+ |... +. .+.+||||+++++++ ..+|+++.+++||.|||.|.|.+. ....|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~---~~-~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~-- 74 (125)
T cd04021 3 QLQITVESAK-LKSN---SK-SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLK-- 74 (125)
T ss_pred eEEEEEEeeE-CCCC---Cc-CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCC--
Confidence 6899999998 5443 33 678999999999887 889999999999999999999975 4578999999999876
Q ss_pred CCCCCCCceeEEEEEEcccccCCc---e--EeeEEEeeeeccCCcccccEEEEEE
Q 042999 699 ASEERPDYRIGKIRIRVSTLENNK---V--YTTSYPLLVLLRTGLKKMGEIELAV 748 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~~~~---~--~~~~~~L~~~~~~g~~~~G~l~l~~ 748 (1006)
.|++||++.++|.++..+. . ...|++|........+..|+|++.+
T Consensus 75 -----~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 75 -----ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred -----CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 7999999999999987532 1 3458888754321223459998865
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=134.00 Aligned_cols=93 Identities=27% Similarity=0.365 Sum_probs=81.4
Q ss_pred CcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCC
Q 042999 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRY 92 (1006)
Q Consensus 13 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~ 92 (1006)
...+.|+|+|++|++|+ .+..|.+||||+|++++++++|+++++++||+|||+|.|...... ....|.|+|||++..
T Consensus 25 ~~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d~~ 101 (127)
T cd04032 25 RGLATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDRDNG 101 (127)
T ss_pred CCcEEEEEEEEECCCCC-cCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeCCCC
Confidence 34589999999999997 466788999999999999999999999999999999999753321 156899999999998
Q ss_pred CCCCCCCCceeEEEEEeCeee
Q 042999 93 CNGSGRKNHFLGRVKLCGSQF 113 (1006)
Q Consensus 93 ~~~~~~~d~~lG~~~v~l~~l 113 (1006)
++|++||++.+++...
T Consensus 102 -----s~dd~IG~~~i~l~~~ 117 (127)
T cd04032 102 -----WDDDLLGTCSVVPEAG 117 (127)
T ss_pred -----CCCCeeEEEEEEecCC
Confidence 7999999999999874
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=138.73 Aligned_cols=91 Identities=31% Similarity=0.535 Sum_probs=84.1
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
|.|+|+|++|++|+..+. +.+||||++.+++++++|++++++.||+|||+|.|.+..+ ...|.|+|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~----~~~l~~~V~D~d~~--- 73 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNP----MAPLKLEVFDKDTF--- 73 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCC----CCEEEEEEEECCCC---
Confidence 689999999999998887 8999999999999999999999999999999999999875 56899999999998
Q ss_pred CCCCCceeEEEEEeCeeeeee
Q 042999 96 SGRKNHFLGRVKLCGSQFARR 116 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~ 116 (1006)
++|++||.+.+++.+++..
T Consensus 74 --~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 74 --SKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred --CCCCEEEEEEEEHHHhhhh
Confidence 7899999999999997543
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=135.51 Aligned_cols=108 Identities=23% Similarity=0.371 Sum_probs=90.7
Q ss_pred cccEEEEEEEEecCCCCCC-CCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 14 TVRKLVVEVVDARDLLPKD-GQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
..+.|.|+|++|++|+.++ ..+.+||||++++. .+.++|+++++++||+|||+|.|.+..... ....|.|+|||+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l-~~~~l~i~v~d~ 90 (123)
T cd08390 12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKEL-QRRTLRLSVYDV 90 (123)
T ss_pred CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHh-cccEEEEEEEEC
Confidence 3568999999999999998 67899999999983 456899999999999999999999876321 145799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
+.. +++++||++.++++++ ........|++|++
T Consensus 91 ~~~-----~~~~~iG~~~i~L~~l-~~~~~~~~w~~L~~ 123 (123)
T cd08390 91 DRF-----SRHCIIGHVLFPLKDL-DLVKGGVVWRDLEP 123 (123)
T ss_pred CcC-----CCCcEEEEEEEeccce-ecCCCceEEEeCCC
Confidence 988 6899999999999996 44445568999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=133.28 Aligned_cols=115 Identities=27% Similarity=0.448 Sum_probs=91.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
|.|+|++|++|+.. |.+||||.+.+++++ ++|+++++ .||.|||+|.|.+.... .....|.|.+||.+..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~-~~~~~l~i~v~d~~~~---- 72 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPD-VTFFTLSFYNKDKRSK---- 72 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCcc-ccEEEEEEEEEecccC----
Confidence 78999999999876 789999999998754 79999988 99999999999987642 2246788899998876
Q ss_pred CCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 97 GRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+++.++|.+.+... ..+.....||+|.+........|+|++.+.|
T Consensus 73 -~~~~~~g~v~l~~~---~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 73 -DRDIVIGKVALSKL---DLGQGKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred -CCeeEEEEEEecCc---CCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence 46667776655433 2355567899998765555678999999875
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-15 Score=160.31 Aligned_cols=104 Identities=30% Similarity=0.494 Sum_probs=92.1
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..|+|+|.+|+||.++|.+|.+||||++.+- ..+++|++++.++||+|||+|+|.+..... ++.|.|+|||||
T Consensus 180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dk--drRlsiEvWDWD 257 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDK--DRRLSIEVWDWD 257 (683)
T ss_pred ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccc--cceeEEEEeccc
Confidence 4789999999999999999999999999993 356999999999999999999999987543 789999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
+. +++||+|...+.++++++.+. +.||.|..
T Consensus 258 rT-----sRNDFMGslSFgisEl~K~p~--~GWyKlLs 288 (683)
T KOG0696|consen 258 RT-----SRNDFMGSLSFGISELQKAPV--DGWYKLLS 288 (683)
T ss_pred cc-----ccccccceecccHHHHhhcch--hhHHHHhh
Confidence 99 899999999999999866543 45998764
|
|
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-14 Score=136.96 Aligned_cols=103 Identities=27% Similarity=0.387 Sum_probs=89.2
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCC--CcEEEEEEEE
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDP--CTVLTVGVFD 691 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~--~~~l~i~v~d 691 (1006)
|.|+|+|++|++|+..+ . .+.+||||.+.+. ....||+++.++.||.|||+|.|++... ...|.|+|||
T Consensus 13 ~~l~v~i~~a~nL~~~~---~-~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d 88 (131)
T cd04026 13 NKLTVEVREAKNLIPMD---P-NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWD 88 (131)
T ss_pred CEEEEEEEEeeCCCCcC---C-CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEE
Confidence 68999999999998754 4 6789999999995 3678999999999999999999998754 4689999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 692 NWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 692 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
++..+ ++++||.+.++|+++... ....||+|.+.
T Consensus 89 ~~~~~-------~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 89 WDRTT-------RNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred CCCCC-------CcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 99876 799999999999999855 55789999764
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.1e-15 Score=139.47 Aligned_cols=103 Identities=19% Similarity=0.164 Sum_probs=84.6
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CE--EEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KK--WVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~--~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..+.|.|+|++|+||++++ . .|.+||||++.+. .+ +.||+++++++||+|||+|.|.|.. ....|.|+
T Consensus 13 ~~~~L~V~Vi~A~nL~~~~---~-~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 13 TAERLTVVVVKARNLVWDN---G-KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred CCCEEEEEEEEeeCCCCcc---C-CCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 3468999999999999864 4 7889999999983 22 5589999999999999999999865 45689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||+|.++ ++++||++.|.... .+...++|..+..
T Consensus 89 V~~~d~~~-------~~~~iG~v~lg~~~--~g~~~~hW~~ml~ 123 (136)
T cd08406 89 VAESTEDG-------KTPNVGHVIIGPAA--SGMGLSHWNQMLA 123 (136)
T ss_pred EEeCCCCC-------CCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence 99999877 89999999997764 3444577877754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=140.32 Aligned_cols=103 Identities=19% Similarity=0.186 Sum_probs=86.3
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--CE---EEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--KK---WVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~~---~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..+.|.|+|++|+||++++ . .|.+||||++.+. ++ ..||+++++++||.|||+|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~vi~a~~L~~~d---~-~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~ 88 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMD---V-SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFL 88 (136)
T ss_pred CCCeEEEEEEEeeCCCccc---c-CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEE
Confidence 3468999999999998864 4 7899999999983 32 5689999999999999999999864 44579999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||+|.++ ++++||++.+++... +....+|++|..
T Consensus 89 v~d~d~~~-------~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 89 VLDSDRVT-------KNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred EEECCCCC-------CCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 99999987 899999999999983 444578998854
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=137.33 Aligned_cols=105 Identities=14% Similarity=0.146 Sum_probs=84.7
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..|.|.|.|++|+||++++.. . .+.+||||++.+.. .+.||+++++++||+|||.|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~V~karnL~~~d~~-~-~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~ 90 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQLK-L-LLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELE 90 (138)
T ss_pred CCCeEEEEEEEecCCCccccC-C-CCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEE
Confidence 457899999999999997631 2 34589999999843 24589999999999999999999875 35679999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||+|.++ ++++||.+.+++.. .|...++|..+..
T Consensus 91 V~d~d~~~-------~~d~iG~v~lg~~~--~g~~~~hW~~ml~ 125 (138)
T cd08407 91 VLNQDSPG-------QSLPLGRCSLGLHT--SGTERQHWEEMLD 125 (138)
T ss_pred EEeCCCCc-------CcceeceEEecCcC--CCcHHHHHHHHHh
Confidence 99999987 89999999999975 3444466766644
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-14 Score=133.35 Aligned_cols=104 Identities=28% Similarity=0.408 Sum_probs=90.5
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
|.|+|+|++|++|+..+..|.+||||++.+++ ..++|++++++.||.|||.|.|.+... ...|.|+|||++..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~----~~~L~v~v~d~~~~-- 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSP----NQKITLEVMDYEKV-- 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCC----CCEEEEEEEECCCC--
Confidence 57999999999999998889999999999976 468999999999999999999988764 46899999999998
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
++|++||++.+++.+++.. ....||.|.+.+
T Consensus 75 ---~~d~~IG~~~~~l~~l~~~--~~~~~~~~~~~~ 105 (120)
T cd04045 75 ---GKDRSLGSVEINVSDLIKK--NEDGKYVEYDDE 105 (120)
T ss_pred ---CCCCeeeEEEEeHHHhhCC--CCCceEEecCCC
Confidence 7899999999999997654 335688777654
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.3e-14 Score=126.80 Aligned_cols=93 Identities=24% Similarity=0.422 Sum_probs=73.1
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECC--
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNW-- 693 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~-- 693 (1006)
|.|+|++|+|| .|.+||||++.+++ ...||+++.+|+||+|||+|.|++.. ...|.+.|||++
T Consensus 1 L~V~V~~A~~L---------~~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGF---------KQSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCC---------CCCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccc
Confidence 68999999999 44589999999852 46899999999999999999999864 668999999983
Q ss_pred -----CCCcCCCCCCCCceeEEEEEEcc--cccCCceEeeEEEe
Q 042999 694 -----RMFADASEERPDYRIGKIRIRVS--TLENNKVYTTSYPL 730 (1006)
Q Consensus 694 -----~~~~~~~~~~~d~~lG~~~i~l~--~l~~~~~~~~~~~L 730 (1006)
..+ +|+++|++.|.|. .+......+..+.|
T Consensus 71 ~~~~d~~~-------~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~ 107 (118)
T cd08686 71 KVKLDGEG-------TDAIMGKGQIQLDPQSLQTKKWQEKVISM 107 (118)
T ss_pred cccccccC-------cccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence 333 7999999888875 33333333444444
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=133.64 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=97.4
Q ss_pred EEEEEEecC--CCCCCCCCCCCcEEEEEE----C-CeEEEeeCcCCCCCCeeeeEEEEEeeCCC-----CCCCceEEEEE
Q 042999 19 VVEVVDARD--LLPKDGQGSSSPYVIADF----D-GQRKRTSTKFRDLNPVWNEPLEFIVSDPK-----NMDCEELEIEV 86 (1006)
Q Consensus 19 ~V~v~~a~~--L~~~~~~g~~dPyv~v~~----~-~~~~kT~~~~~t~nP~wne~f~f~~~~~~-----~~~~~~L~i~V 86 (1006)
.++|..|++ |+..+..+.+||||++++ + .++.||+++++|+||+|||+|.|.+.... ......|.|+|
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V 84 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV 84 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence 455555555 777787889999999997 2 46799999999999999999999996542 12356799999
Q ss_pred EeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecCc
Q 042999 87 YNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDELS 150 (1006)
Q Consensus 87 ~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~ 150 (1006)
||++.++ ++|++||++.++|+.+ ........|++|.... ....|+|++++..-....
T Consensus 85 ~d~~~f~----~~D~~iG~~~i~L~~l-~~~~~~~~~~~L~~~~--k~~Gg~l~v~ir~r~p~~ 141 (155)
T cd08690 85 YHKGGFL----RSDKLLGTAQVKLEPL-ETKCEIHESVDLMDGR--KATGGKLEVKVRLREPLT 141 (155)
T ss_pred EeCCCcc----cCCCeeEEEEEEcccc-cccCcceEEEEhhhCC--CCcCCEEEEEEEecCCCc
Confidence 9999862 4799999999999996 4444455799988533 245799999999876653
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-14 Score=137.02 Aligned_cols=106 Identities=24% Similarity=0.436 Sum_probs=91.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEC----CeEEEeeCcCCCCCCeeeeEEEEEeeCCC------------CCCCce
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFD----GQRKRTSTKFRDLNPVWNEPLEFIVSDPK------------NMDCEE 81 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~----~~~~kT~~~~~t~nP~wne~f~f~~~~~~------------~~~~~~ 81 (1006)
|+|+|++|++|+.+ ..|.+||||+++++ +++++|+++.++.||.|||+|.|.+.... +.....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57999999999988 77899999999998 77899999999999999999999987741 223668
Q ss_pred EEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 82 LEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 82 L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
|.|+|||++.. ++++|||++.+++.++. .......|++|.+.+
T Consensus 80 l~i~V~d~~~~-----~~~~~IG~~~i~l~~l~-~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMV-----SGDDFLGEVRIPLQGLQ-QAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcC-----cCCcEEEEEEEehhhcc-CCCcccceEecCCcC
Confidence 99999999988 78999999999999964 344556899998765
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-14 Score=133.47 Aligned_cols=126 Identities=18% Similarity=0.269 Sum_probs=101.2
Q ss_pred CcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 13 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
+....|.|.|++|++|+.++ +|||.+.+++++ .||+++.++.||.|+|.|.|..... -..|.|.||+.+.
T Consensus 8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~----~~~l~v~v~k~~~ 78 (146)
T cd04013 8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPP----VSVITVNLYRESD 78 (146)
T ss_pred EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCc----ccEEEEEEEEccC
Confidence 35578999999999998765 799999999988 6999999999999999999986554 3579999987653
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCce--------eeeEEEEEEEEEEecC
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFS--------WIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~--------~~~G~i~l~~~~~~~~ 149 (1006)
.. +.+.++++||.+.|++.++. .+...+.||+|....... ...+.|++++.|.+..
T Consensus 79 ~~-~~~~~~~~IG~V~Ip~~~l~-~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~ 142 (146)
T cd04013 79 KK-KKKDKSQLIGTVNIPVTDVS-SRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR 142 (146)
T ss_pred cc-ccccCCcEEEEEEEEHHHhc-CCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence 31 01126899999999999964 677778999998755442 3458999999998865
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-14 Score=131.38 Aligned_cols=98 Identities=23% Similarity=0.291 Sum_probs=83.7
Q ss_pred CCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccc
Q 042999 641 KGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTL 718 (1006)
Q Consensus 641 ~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l 718 (1006)
+|++||||+|.++++ ..+|+++.++.||.|||.|.|.+.++ ...|.|.|||++.+ +|++||.+.++|.++
T Consensus 10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~--------~d~~iG~~~v~L~~l 81 (111)
T cd04052 10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR--------HDPVLGSVSISLNDL 81 (111)
T ss_pred CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC--------CCCeEEEEEecHHHH
Confidence 789999999999875 57999999999999999999999875 56899999999875 488999999999998
Q ss_pred cC-CceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 719 EN-NKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 719 ~~-~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
.. +.....||+|.+ .+.|+|++++.|.+
T Consensus 82 ~~~~~~~~~w~~L~~------~~~G~i~~~~~~~p 110 (111)
T cd04052 82 IDATSVGQQWFPLSG------NGQGRIRISALWKP 110 (111)
T ss_pred HhhhhccceeEECCC------CCCCEEEEEEEEec
Confidence 54 344579999964 23599999999975
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.1e-14 Score=132.34 Aligned_cols=118 Identities=25% Similarity=0.276 Sum_probs=91.5
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--C-----------EEEEeecccCCCCCee-ccEEEEEEeCCCcEE
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--K-----------KWVRTRTITDCFDPRW-NEQYTWQVYDPCTVL 685 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~-----------~~~rT~~~~~~~nP~w-ne~~~~~v~~~~~~l 685 (1006)
...|.+++|+||+ . +. .|++||||++.+. + +..||+++++++||+| ||+|.|.+. ..+.|
T Consensus 2 ~~~~~~~~A~~L~-~---~~-fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-K---GM-FFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-C---cc-CCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEE
Confidence 3678999999996 3 45 7899999999984 2 3689999999999999 999999985 45689
Q ss_pred EEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCc---eEeeEEEeeeeccCCcccccEEEEEE
Q 042999 686 TVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNK---VYTTSYPLLVLLRTGLKKMGEIELAV 748 (1006)
Q Consensus 686 ~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~g~~~~G~l~l~~ 748 (1006)
.|+|||++..+ +. ..+++||++.|++.++..+. ....||+|......+. -.|+|.+.+
T Consensus 76 ~v~V~D~~~~~--~~--~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~-v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKS--RP--IIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDH-VSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCC--Cc--cCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCc-EEEEEEEEe
Confidence 99999986533 00 02789999999999997552 3467999975544333 349998865
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=6e-14 Score=131.24 Aligned_cols=112 Identities=30% Similarity=0.427 Sum_probs=94.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
|+|+|++|++|+..+..+.+||||++.+++ ..++|+++.++.||.|||+|.|.+.... ...|.|+|||++..
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~---~~~l~~~v~d~~~~---- 73 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRV---RAVLKVEVYDWDRG---- 73 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCC---CCEEEEEEEeCCCC----
Confidence 579999999999988888999999999975 4589999999999999999999987642 56899999999988
Q ss_pred CCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEE
Q 042999 97 GRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIG 140 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~ 140 (1006)
+++++||++.+++.++ ..+.....|++|.+.+.. ..|.+.
T Consensus 74 -~~~~~iG~~~~~l~~l-~~~~~~~~~~~L~~~g~~--~~~~~~ 113 (115)
T cd04040 74 -GKDDLLGSAYIDLSDL-EPEETTELTLPLDGQGGG--KLGAVF 113 (115)
T ss_pred -CCCCceEEEEEEHHHc-CCCCcEEEEEECcCCCCc--cCceEE
Confidence 7899999999999996 445566789999865532 256554
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-14 Score=138.41 Aligned_cols=104 Identities=25% Similarity=0.289 Sum_probs=86.9
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--C---EEEEeecccCCCCCeeccEEEEEEeCC---CcEEEE
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--K---KWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTV 687 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~---~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i 687 (1006)
+..|.|+|+|++|++|++++ . .|.+||||.|.++ + ...+|+++++++||.|||+|.|++... ...|.|
T Consensus 12 ~~~~~l~V~Vi~a~~L~~~d---~-~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 12 PTAGKLTVVILEAKNLKKMD---V-GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred CCCCeEEEEEEEeeCCCccc---C-CCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 35689999999999998864 4 7889999999984 2 356899999999999999999998642 247999
Q ss_pred EEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 688 GVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 688 ~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
+|||++.++ +|++||.+.|++... +...++|+++..
T Consensus 88 ~v~d~~~~~-------~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 88 TVLDYDRIG-------KNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred EEEeCCCCC-------CCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 999999887 899999999999864 444578888854
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.7e-14 Score=134.58 Aligned_cols=103 Identities=21% Similarity=0.249 Sum_probs=85.6
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE--CC---EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY--GK---KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~--~~---~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..|.|.|+|++|+||++++ . .|.+||||++.+ ++ ...||++++++.||.|||.|.|.+.. ....|.|+
T Consensus 13 ~~~~L~v~vi~a~~L~~~~---~-~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~ 88 (136)
T cd08405 13 TANRITVNIIKARNLKAMD---I-NGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIIT 88 (136)
T ss_pred CCCeEEEEEEEeeCCCccc---c-CCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 4578999999999998754 4 788999999998 32 35689999999999999999999753 24589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||++.++ +|++||++.|++.+. +...++|++|..
T Consensus 89 v~d~~~~~-------~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 89 VMDKDRLS-------RNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred EEECCCCC-------CCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 99999887 789999999999876 444467887754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-14 Score=133.65 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=89.6
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEE--EEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW--VRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMF 696 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~--~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~ 696 (1006)
.|+|.|++|+||++++ . .|++||||++.+++.. .||+++++++||+|||+|.|++..+ ...|.|+|||+|.++
T Consensus 1 ~lrV~Vi~a~~L~~~d---~-~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~ 76 (124)
T cd04037 1 LVRVYVVRARNLQPKD---P-NGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLG 76 (124)
T ss_pred CEEEEEEECcCCCCCC---C-CCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCC
Confidence 3789999999998864 4 7899999999999865 4788899999999999999998765 568999999999887
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
+|++||++.|+|.+..-. .+|+.... . ....+.|.++..-.+.+
T Consensus 77 -------~dd~iG~~~i~l~~~~~~---~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 120 (124)
T cd04037 77 -------SDDLIGETVIDLEDRFFS---KHRATCGL-P-PTYEESGPNQWRDSLKP 120 (124)
T ss_pred -------CCceeEEEEEeecccccc---hHHHhccC-C-CcccccCceecCcccCc
Confidence 799999999999876532 22322211 1 11124577777655544
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.5e-15 Score=154.30 Aligned_cols=117 Identities=26% Similarity=0.418 Sum_probs=99.3
Q ss_pred ceeeeEEEEEeeeCCccccccccccCCCCCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC----
Q 042999 578 SYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---- 653 (1006)
Q Consensus 578 ~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---- 653 (1006)
+.+|+|++.+.+.+ ..|+|+|.+|+||.|||. +|-|||||.+++-
T Consensus 166 E~RGrl~l~~~~~~---------------------------~~l~v~i~ea~NLiPMDp----NGlSDPYvk~kliPD~~ 214 (683)
T KOG0696|consen 166 ERRGRLYLEAHIKR---------------------------DVLTVTIKEAKNLIPMDP----NGLSDPYVKLKLIPDPK 214 (683)
T ss_pred hhcceEEEEEEecC---------------------------ceEEEEehhhccccccCC----CCCCCcceeEEeccCCc
Confidence 44799998876543 268999999999999975 8899999999982
Q ss_pred -CEEEEeecccCCCCCeeccEEEEEEeC--CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 654 -KKWVRTRTITDCFDPRWNEQYTWQVYD--PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 654 -~~~~rT~~~~~~~nP~wne~~~~~v~~--~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
....+|+|++.++||+|||+|+|.+.. ....|.|+|||||+-+ .+||+|...+.+++|... +.+.||.|
T Consensus 215 ~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrTs-------RNDFMGslSFgisEl~K~-p~~GWyKl 286 (683)
T KOG0696|consen 215 NESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRTS-------RNDFMGSLSFGISELQKA-PVDGWYKL 286 (683)
T ss_pred chhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccccc-------cccccceecccHHHHhhc-chhhHHHH
Confidence 345699999999999999999999875 4568999999999876 899999999999999854 45789988
Q ss_pred eee
Q 042999 731 LVL 733 (1006)
Q Consensus 731 ~~~ 733 (1006)
...
T Consensus 287 Lsq 289 (683)
T KOG0696|consen 287 LSQ 289 (683)
T ss_pred hhh
Confidence 763
|
|
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.5e-14 Score=129.65 Aligned_cols=101 Identities=26% Similarity=0.443 Sum_probs=86.4
Q ss_pred CCCCCCcEEEEEECCe-EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCe
Q 042999 33 GQGSSSPYVIADFDGQ-RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGS 111 (1006)
Q Consensus 33 ~~g~~dPyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~ 111 (1006)
..|.+||||++.++++ .++|++++++.||+|||.|.|.+.+.. ...|.|.|||++.+ ++++||.+.++|+
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~---~~~l~i~v~d~~~~------~d~~iG~~~v~L~ 79 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRR---KSRVTVVVKDDRDR------HDPVLGSVSISLN 79 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcC---CCEEEEEEEECCCC------CCCeEEEEEecHH
Confidence 3688999999999875 579999999999999999999987643 56799999999987 7899999999999
Q ss_pred eeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 112 QFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 112 ~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
+++..+.....||+|... ..|+|++++.|.|
T Consensus 80 ~l~~~~~~~~~w~~L~~~-----~~G~i~~~~~~~p 110 (111)
T cd04052 80 DLIDATSVGQQWFPLSGN-----GQGRIRISALWKP 110 (111)
T ss_pred HHHhhhhccceeEECCCC-----CCCEEEEEEEEec
Confidence 976655556789999852 3799999999976
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-14 Score=137.87 Aligned_cols=103 Identities=17% Similarity=0.259 Sum_probs=86.9
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~ 688 (1006)
..|.|.|+|++|+||++++ . .|.+||||++.+. ....||+++++++||.|||+|.|++... ...|.|+
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d---~-~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~ 86 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMD---A-NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEIT 86 (133)
T ss_pred CCCEEEEEEEEEcCCCCcC---C-CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEE
Confidence 5689999999999999865 4 7789999999984 2467999999999999999999998653 4589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||+|..+ +|++||.+.|++.. .+....+||++..
T Consensus 87 V~d~d~~~-------~~~~lG~~~i~l~~--~~~~~~~W~~~l~ 121 (133)
T cd08384 87 VWDKDIGK-------SNDYIGGLQLGINA--KGERLRHWLDCLK 121 (133)
T ss_pred EEeCCCCC-------CccEEEEEEEecCC--CCchHHHHHHHHh
Confidence 99999876 78999999999986 3444478998854
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=131.37 Aligned_cols=104 Identities=21% Similarity=0.269 Sum_probs=83.3
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE--CC---EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY--GK---KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~--~~---~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..|.|.|+|++|++|++++ . .|.+||||++.+ ++ +..+|+++++++||.|||+|.|.+.. ....|.|+
T Consensus 12 ~~~~L~V~vi~a~~L~~~d---~-~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~ 87 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQTD---M-SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFT 87 (135)
T ss_pred CCCeEEEEEEEecCCCccc---C-CCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEE
Confidence 5689999999999999865 4 778999999997 32 35689999999999999999999854 23479999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||+|..+ +|++||.+.|....... ...++|+.|..
T Consensus 88 V~d~d~~~-------~~~~iG~~~l~~~~~~~-~~~~~W~~l~~ 123 (135)
T cd08410 88 VYGHNVKS-------SNDFIGRIVIGQYSSGP-SETNHWRRMLN 123 (135)
T ss_pred EEeCCCCC-------CCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence 99999876 89999999877644432 22367887765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.3e-14 Score=134.20 Aligned_cols=105 Identities=26% Similarity=0.327 Sum_probs=86.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|+||+..+..|.+||||++++.. .+++|+++++++||+|||+|.|.+... .+....|.|.|||+
T Consensus 14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~-~l~~~~l~~~V~~~ 92 (136)
T cd08406 14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAI-VLQDLSLRVTVAES 92 (136)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHH-HhCCcEEEEEEEeC
Confidence 458999999999999999889999999999942 257899999999999999999998763 23367899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
|.+ +++++||++.+.... .+....+|..+..
T Consensus 93 d~~-----~~~~~iG~v~lg~~~---~g~~~~hW~~ml~ 123 (136)
T cd08406 93 TED-----GKTPNVGHVIIGPAA---SGMGLSHWNQMLA 123 (136)
T ss_pred CCC-----CCCCeeEEEEECCCC---CChhHHHHHHHHH
Confidence 998 799999999997653 3444456776554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-14 Score=137.34 Aligned_cols=107 Identities=23% Similarity=0.410 Sum_probs=89.9
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|++|+.++..|.+||||++.+. ..+++|+++++++||+|||+|.|.+.... +....|.|+|||
T Consensus 11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~-l~~~~l~~~V~d 89 (133)
T cd08384 11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSD-LAKKTLEITVWD 89 (133)
T ss_pred CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHH-hCCCEEEEEEEe
Confidence 467899999999999999988999999999995 24589999999999999999999987632 225689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
++.. +++++||++.+++.. .+....+|+.+.+.
T Consensus 90 ~d~~-----~~~~~lG~~~i~l~~---~~~~~~~W~~~l~~ 122 (133)
T cd08384 90 KDIG-----KSNDYIGGLQLGINA---KGERLRHWLDCLKN 122 (133)
T ss_pred CCCC-----CCccEEEEEEEecCC---CCchHHHHHHHHhC
Confidence 9988 789999999999975 34445679887543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.1e-14 Score=135.41 Aligned_cols=103 Identities=24% Similarity=0.259 Sum_probs=84.7
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--C---EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--K---KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~---~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..|.|+|+|++|++|++++ . .|.+||||++.+. + ...+|+++++++||.|||+|.|.+.. ....|.|+
T Consensus 12 ~~~~L~V~v~~A~~L~~~d---~-~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMD---I-TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred CCCEEEEEEEEeeCCCccc---c-CCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 5689999999999999865 4 7899999999983 2 25689999999999999999999854 22469999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||++..+ +|++||++.|++... +...++|+++..
T Consensus 88 v~d~~~~~-------~~~~IG~~~l~~~~~--~~~~~~w~~~~~ 122 (134)
T cd08403 88 VVDYDRVG-------HNELIGVCRVGPNAD--GQGREHWNEMLA 122 (134)
T ss_pred EEECCCCC-------CCceeEEEEECCCCC--CchHHHHHHHHH
Confidence 99999887 899999999998743 333478887754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.50 E-value=6e-14 Score=133.62 Aligned_cols=104 Identities=24% Similarity=0.322 Sum_probs=85.4
Q ss_pred ccEEEEEEEEecCCCCCCC--CCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 15 VRKLVVEVVDARDLLPKDG--QGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~--~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
.+.|.|.|++|+||..++. .+.+||||++++.. .++||+++++++||+|||.|.|.+... .+....|.|+||
T Consensus 14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~-~L~~~~L~~~V~ 92 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE-LLAASSVELEVL 92 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH-HhCccEEEEEEE
Confidence 5679999999999999883 35599999999953 247999999999999999999998763 333678999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
|+|.+ +++++||++.+++.. .|....+|..+.
T Consensus 93 d~d~~-----~~~d~iG~v~lg~~~---~g~~~~hW~~ml 124 (138)
T cd08407 93 NQDSP-----GQSLPLGRCSLGLHT---SGTERQHWEEML 124 (138)
T ss_pred eCCCC-----cCcceeceEEecCcC---CCcHHHHHHHHH
Confidence 99999 899999999999864 344444676554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.6e-14 Score=180.06 Aligned_cols=119 Identities=22% Similarity=0.401 Sum_probs=103.6
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeCCC--cEEEEEEEEC
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYDPC--TVLTVGVFDN 692 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~~~--~~l~i~v~d~ 692 (1006)
...|.|.|+|++|+||. + . .|++||||++.+|++ ..||++++++.||+|||+|+|.+.+|. .+|+|+|||+
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~---~-~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--Q---S-MGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred hCCcceEEEEeeccccc--c---c-cCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence 45999999999999995 1 2 689999999999955 889999999999999999999998865 6899999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccE---EEEEEEEec
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGE---IELAVRFVC 752 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~---l~l~~~~~~ 752 (1006)
|.++ ++.||++.|++.++..++.++.||+|.++ | +|.|+ |+++++|+.
T Consensus 2051 d~f~--------kd~~G~~~i~l~~vv~~~~~~~~~~L~~~---~-~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFG--------KSSLGKVTIQIDRVVMEGTYSGEYSLNPE---S-NKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccC--------CCCCceEEEEHHHHhcCceeeeeeecCcc---c-ccCCCcceEEEEEEecC
Confidence 9986 45999999999999999999999999752 2 24477 999998863
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-13 Score=128.70 Aligned_cols=117 Identities=19% Similarity=0.289 Sum_probs=94.8
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEE------CCEEEEeecccCCC-CCeeccEEEEEEeCCC-cEEEEEEEE
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKY------GKKWVRTRTITDCF-DPRWNEQYTWQVYDPC-TVLTVGVFD 691 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~------~~~~~rT~~~~~~~-nP~wne~~~~~v~~~~-~~l~i~v~d 691 (1006)
.|+|+|++|+||+.++. +. .+.+||||++++ .....||+++.++. ||.|||+|.|.+..+. ..|.|.|||
T Consensus 3 ~l~v~vi~a~~L~~~~~-~~-~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d 80 (128)
T cd00275 3 TLTIKIISGQQLPKPKG-DK-GSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYD 80 (128)
T ss_pred EEEEEEEeeecCCCCCC-CC-CCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEe
Confidence 68999999999988652 13 678999999998 35678999988876 9999999999998765 579999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 692 NWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 692 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
++.. +|++||.+.+++.++..+ ..+++|.+..... ...|.|.+.+.+
T Consensus 81 ~~~~--------~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 81 EDSG--------DDDFLGQACLPLDSLRQG---YRHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCCC--------CCcEeEEEEEEhHHhcCc---eEEEEecCCCCCC-CcceeEEEEEEE
Confidence 9864 488999999999999766 3688997654432 234899988875
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-13 Score=133.51 Aligned_cols=102 Identities=22% Similarity=0.290 Sum_probs=85.9
Q ss_pred cCCceEEEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC-----------------------------ccceeeeeecC
Q 042999 450 QSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL-----------------------------QSARTRRGSMN 500 (1006)
Q Consensus 450 ~~p~~~~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~-----------------------------~~~kT~~~~~~ 500 (1006)
..|..+.|+|+|++|+||..+ |.+|.+||||+|.+++ +.++|+++.
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~---d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~-- 97 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAK---DVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKP-- 97 (153)
T ss_pred cCCCeEEEEEEEEeccCCccc---CCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceec--
Confidence 456788999999999999977 7889999999999963 235676654
Q ss_pred CCCCCceecceeeeeeccCCCCcEEEEEEECCCCccccceeEEEEEeccccccccccCcccceEEeC
Q 042999 501 NHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPL 567 (1006)
Q Consensus 501 ~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L 567 (1006)
+++||.|||.|.|.+.....+.|.|+|||++ +++||++.++++++... ....||.|
T Consensus 98 -~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d-----d~~IG~v~i~l~~l~~~-----~~d~W~~L 153 (153)
T cd08676 98 -QTLNPVWNETFRFEVEDVSNDQLHLDIWDHD-----DDFLGCVNIPLKDLPSC-----GLDSWFKL 153 (153)
T ss_pred -CCCCCccccEEEEEeccCCCCEEEEEEEecC-----CCeEEEEEEEHHHhCCC-----CCCCeEeC
Confidence 8999999999999998766778999999987 68999999999999831 24789986
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-14 Score=137.00 Aligned_cols=107 Identities=30% Similarity=0.417 Sum_probs=89.2
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD--G---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|+||+.++..|.+||||++.+. + .+.+|+++++++||.|||+|.|.+..... ....|.|+|||
T Consensus 13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~-~~~~l~~~v~d 91 (136)
T cd08404 13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL-EDISVEFLVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh-CCCEEEEEEEE
Confidence 356899999999999999988999999999984 2 25789999999999999999999865321 25679999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
++.+ +++++||++.+++.. .+....+|++|...
T Consensus 92 ~d~~-----~~~~~iG~~~~~~~~---~~~~~~~w~~l~~~ 124 (136)
T cd08404 92 SDRV-----TKNEVIGRLVLGPKA---SGSGGHHWKEVCNP 124 (136)
T ss_pred CCCC-----CCCccEEEEEECCcC---CCchHHHHHHHHhC
Confidence 9998 789999999999887 23445578887654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-13 Score=131.90 Aligned_cols=95 Identities=29% Similarity=0.425 Sum_probs=83.0
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-------CeEEEeeCcCCCCCCeeeeEEEEEeeCCC-CCCCceEEEEE
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-------GQRKRTSTKFRDLNPVWNEPLEFIVSDPK-NMDCEELEIEV 86 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-------~~~~kT~~~~~t~nP~wne~f~f~~~~~~-~~~~~~L~i~V 86 (1006)
.+.|.|+|++|++|+..+..|.+||||++++. ..+++|+++++|+||+|||+|.|.+.... ......|.|+|
T Consensus 15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V 94 (133)
T cd04009 15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTV 94 (133)
T ss_pred CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEE
Confidence 56899999999999999888999999999995 34689999999999999999999987632 12256899999
Q ss_pred EeCCCCCCCCCCCCceeEEEEEeCeeee
Q 042999 87 YNDKRYCNGSGRKNHFLGRVKLCGSQFA 114 (1006)
Q Consensus 87 ~d~d~~~~~~~~~d~~lG~~~v~l~~l~ 114 (1006)
||++.. +++++||++.++++++.
T Consensus 95 ~d~d~~-----~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 95 KDYDLL-----GSNDFEGEAFLPLNDIP 117 (133)
T ss_pred EecCCC-----CCCcEeEEEEEeHHHCC
Confidence 999998 78999999999999974
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-13 Score=127.11 Aligned_cols=99 Identities=25% Similarity=0.338 Sum_probs=82.0
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCC----CcEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDP----CTVLTVG 688 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~----~~~l~i~ 688 (1006)
.+.|+|+|++|++|++.+ . .+.+||||++.+. ....||+++.++.||.|||.|.|..... ...|.|+
T Consensus 14 ~~~L~V~v~~a~~L~~~~---~-~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~ 89 (123)
T cd04035 14 NSALHCTIIRAKGLKAMD---A-NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLL 89 (123)
T ss_pred CCEEEEEEEEeeCCCCCC---C-CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEE
Confidence 468999999999998754 4 6789999999973 2468999999999999999999975442 4689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEE
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSY 728 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 728 (1006)
|||++.. .+++||.+.++|+++..+...+.++
T Consensus 90 v~d~~~~--------~~~~iG~~~i~l~~l~~~~~~~~~~ 121 (123)
T cd04035 90 VLDEDRF--------GNDFLGETRIPLKKLKPNQTKQFNI 121 (123)
T ss_pred EEEcCCc--------CCeeEEEEEEEcccCCCCcceEeec
Confidence 9999865 3789999999999999877444444
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=129.18 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=82.9
Q ss_pred EEeeccCCccCccCCCCCCCCCeEEEEEECCE-------EEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCC-
Q 042999 624 GILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-------WVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWR- 694 (1006)
Q Consensus 624 ~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-------~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~- 694 (1006)
..++|++|++.+ . .|++||||++.+++. ..||+++++++||+|||.|.|.+.. ....|.|+|||+|.
T Consensus 5 ~~i~a~~L~~~d---~-~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~ 80 (120)
T cd04048 5 LSISCRNLLDKD---V-LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSK 80 (120)
T ss_pred EEEEccCCCCCC---C-CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCC
Confidence 458999998854 4 789999999999643 4799999999999999999998653 55689999999997
Q ss_pred ---CCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 695 ---MFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 695 ---~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
.+ +|++||.+.+++++|..+.....+++|..
T Consensus 81 ~~~~~-------~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 81 SKDLS-------DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred cCCCC-------CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 55 79999999999999987765678898843
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-13 Score=128.86 Aligned_cols=89 Identities=27% Similarity=0.378 Sum_probs=79.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECCeE--EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQR--KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~--~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
.|+|.|++|++|...+..|.+||||++.++++. .+|+++++++||+|||+|.|.+..+. ...|.|+|||++..
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~---~~~L~~~V~d~d~~-- 75 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPG---NSILKISVMDYDLL-- 75 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCC---CCEEEEEEEECCCC--
Confidence 478999999999999988999999999998765 57888889999999999999986543 46899999999998
Q ss_pred CCCCCCceeEEEEEeCeee
Q 042999 95 GSGRKNHFLGRVKLCGSQF 113 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l 113 (1006)
++|++||++.+++++.
T Consensus 76 ---~~dd~iG~~~i~l~~~ 91 (124)
T cd04037 76 ---GSDDLIGETVIDLEDR 91 (124)
T ss_pred ---CCCceeEEEEEeeccc
Confidence 7899999999999984
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=131.94 Aligned_cols=107 Identities=32% Similarity=0.421 Sum_probs=88.2
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD--G---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|++|+.++..|.+||||++.+. + .+++|+++++++||.|||+|.|.+.... +....|.|+|||
T Consensus 13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~-l~~~~l~~~v~d 91 (136)
T cd08402 13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ-IQKVHLIVTVLD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHH-hCCCEEEEEEEe
Confidence 357899999999999999988999999999994 2 3578999999999999999999986532 224579999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
++.+ +++++||++.+++.. .+....+|+++...
T Consensus 92 ~~~~-----~~~~~iG~~~i~~~~---~~~~~~~W~~~~~~ 124 (136)
T cd08402 92 YDRI-----GKNDPIGKVVLGCNA---TGAELRHWSDMLAS 124 (136)
T ss_pred CCCC-----CCCceeEEEEECCcc---CChHHHHHHHHHhC
Confidence 9998 789999999999875 24444568877543
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.8e-14 Score=134.14 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=88.1
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~ 688 (1006)
..|.|.|.|++|+||++.+ . .+.+||||++.+.+ ...+|+++.++.||.|||+|.|.+... ...|.|+
T Consensus 12 ~~~~L~V~v~~a~~L~~~~---~-~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~ 87 (134)
T cd00276 12 TAERLTVVVLKARNLPPSD---G-KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVIT 87 (134)
T ss_pred CCCEEEEEEEEeeCCCCcc---C-CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEE
Confidence 3478999999999998854 3 77899999999853 256899999999999999999998764 4789999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
|||.+..+ ++++||.+.|++.+ .+...++|++|...
T Consensus 88 v~d~~~~~-------~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 88 VVDKDSVG-------RNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred EEecCCCC-------CCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 99999876 78999999999999 45555899999764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-13 Score=132.62 Aligned_cols=104 Identities=18% Similarity=0.268 Sum_probs=85.1
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..+.|.|+|++|+||++++ .+.+||||++.+.. ...||++++++.||+|||.|.|.+.. ....|.|+
T Consensus 13 ~~~~L~V~V~~a~nL~~~~-----~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~ 87 (137)
T cd08409 13 TLNRLTVVVLRARGLRQLD-----HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLS 87 (137)
T ss_pred CCCeEEEEEEEecCCCccc-----CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEE
Confidence 3468999999999998864 45689999999742 35689999999999999999999853 33589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||.+..+ ++++||++.|.......+...++|..+..
T Consensus 88 V~~~~~~~-------~~~~lG~v~ig~~~~~~~~~~~hW~~~~~ 124 (137)
T cd08409 88 VMQSGGVR-------KSKLLGRVVLGPFMYARGKELEHWNDMLS 124 (137)
T ss_pred EEeCCCCC-------CcceEEEEEECCcccCCChHHHHHHHHHh
Confidence 99999876 79999999999766666665677877754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-13 Score=130.57 Aligned_cols=106 Identities=32% Similarity=0.522 Sum_probs=91.3
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
+.|.|+|++|++|+..+..+.+||||++.+.+ ..++|++++++.||.|||+|.|.+.... ....|.|+|||++
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d~~ 90 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWDWD 90 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEECC
Confidence 68999999999999988888999999999962 6799999999999999999999987642 1468999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
.. +++++||++.++++++... ....||+|.+..
T Consensus 91 ~~-----~~~~~iG~~~~~l~~l~~~--~~~~w~~L~~~~ 123 (131)
T cd04026 91 RT-----TRNDFMGSLSFGVSELIKM--PVDGWYKLLNQE 123 (131)
T ss_pred CC-----CCcceeEEEEEeHHHhCcC--ccCceEECcCcc
Confidence 88 6899999999999997533 456799997643
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.3e-14 Score=134.46 Aligned_cols=107 Identities=19% Similarity=0.287 Sum_probs=88.1
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---C---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---G---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|+|++|+||..++..|.+||||++.+. + .+++|++++++.||+|||+|.|.+... ++....|.|.||
T Consensus 13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~-~l~~~~L~~~V~ 91 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALF-QLSEVTLMFSVY 91 (138)
T ss_pred CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHH-HhCccEEEEEEE
Confidence 457899999999999999989999999999994 2 247999999999999999999998763 233678999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
|++.+ +++++||++.+++... ......+|..+..
T Consensus 92 ~~~~~-----~~~~~iG~v~l~~~~~--~~~~~~hW~~~l~ 125 (138)
T cd08408 92 NKRKM-----KRKEMIGWFSLGLNSS--GEEEEEHWNEMKE 125 (138)
T ss_pred ECCCC-----CCCcEEEEEEECCcCC--CchHHHHHHHHHh
Confidence 99998 7999999999987752 1123346877654
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-13 Score=127.99 Aligned_cols=105 Identities=17% Similarity=0.238 Sum_probs=85.2
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCC-CCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDL-NPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~-nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|+|++|+||++.+..+.+||||+|++- -.++||+++++|+ ||+|||+|.|.+... +. +..|.|+||
T Consensus 12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~-~~-~v~l~v~v~ 89 (135)
T cd08692 12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQ-EH-GIQFLIKLY 89 (135)
T ss_pred cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCch-hh-eeEEEEEEE
Confidence 457899999999999988666778999999983 2468999999995 699999999999874 33 578999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
|++.. +++++||++.++.+.. .+....+|.++.
T Consensus 90 d~~~~-----~~n~~IG~v~lG~~~~--~~~~~~hW~~m~ 122 (135)
T cd08692 90 SRSSV-----RRKHFLGQVWISSDSS--SSEAVEQWKDTI 122 (135)
T ss_pred eCCCC-----cCCceEEEEEECCccC--CchhhhhHHHHH
Confidence 99988 7999999999998752 223345676654
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.4e-14 Score=133.70 Aligned_cols=107 Identities=24% Similarity=0.407 Sum_probs=85.8
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-C----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-G----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-~----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+.++..|.+||||++.+. + .+++|+++++++||+|||+|.|.+.... .....|.|+|||+
T Consensus 13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~-l~~~~l~~~V~d~ 91 (135)
T cd08410 13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEE-LENVSLVFTVYGH 91 (135)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHH-hCCCEEEEEEEeC
Confidence 46899999999999999988999999999983 2 3579999999999999999999986532 2244799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
+.. +++++||++.+.... ..+....+|+.|...
T Consensus 92 d~~-----~~~~~iG~~~l~~~~--~~~~~~~~W~~l~~~ 124 (135)
T cd08410 92 NVK-----SSNDFIGRIVIGQYS--SGPSETNHWRRMLNS 124 (135)
T ss_pred CCC-----CCCcEEEEEEEcCcc--CCchHHHHHHHHHhC
Confidence 998 799999999876433 222234578877654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-13 Score=157.98 Aligned_cols=125 Identities=22% Similarity=0.281 Sum_probs=105.2
Q ss_pred ccEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEECCeE-EE
Q 042999 15 VRKLVVEVVDARDLLPKDG------------------------------------------QGSSSPYVIADFDGQR-KR 51 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~------------------------------------------~g~~dPyv~v~~~~~~-~k 51 (1006)
-|.|.++|.+|++|+.+|. .+++||||+|.+++++ .|
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~R 92 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLAR 92 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcceee
Confidence 3678999999999985221 2478999999998764 69
Q ss_pred eeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC
Q 042999 52 TSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV 131 (1006)
Q Consensus 52 T~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~ 131 (1006)
|+++++++||+|||+|.|.+.++ ...|.|+|||+|.+ ++++||++.++++++ ..+.....|++|.+...
T Consensus 93 TrVi~n~~NPvWNE~F~f~vah~----~s~L~f~VkD~D~~------gaD~IG~a~IPL~~L-~~Ge~vd~Wl~Ll~~~~ 161 (868)
T PLN03008 93 TRVLKNSQEPLWDEKFNISIAHP----FAYLEFQVKDDDVF------GAQIIGTAKIPVRDI-ASGERISGWFPVLGASG 161 (868)
T ss_pred EEeCCCCCCCCcceeEEEEecCC----CceEEEEEEcCCcc------CCceeEEEEEEHHHc-CCCCceEEEEEccccCC
Confidence 99999999999999999999885 45899999999999 469999999999995 66777789999986543
Q ss_pred c-eeeeEEEEEEEEEEecCc
Q 042999 132 F-SWIRGEIGLRIYYYDELS 150 (1006)
Q Consensus 132 ~-~~~~G~i~l~~~~~~~~~ 150 (1006)
+ .+..|+|+|++.|.+...
T Consensus 162 kp~k~~~kl~v~lqf~pv~~ 181 (868)
T PLN03008 162 KPPKAETAIFIDMKFTPFDQ 181 (868)
T ss_pred CCCCCCcEEEEEEEEEEccc
Confidence 3 345689999999999875
|
|
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.1e-13 Score=123.65 Aligned_cols=94 Identities=17% Similarity=0.212 Sum_probs=73.0
Q ss_pred CCceEEEEEEEEEeecCcccCCCCCCCCCCcEEEEEEC--C---ccceeeeeecCCCCC-CceecceeeeeeccCCCC-c
Q 042999 451 SPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLA--L---QSARTRRGSMNNHSS-SFHWHEDVFFVAAEPFED-S 523 (1006)
Q Consensus 451 ~p~~~~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg--~---~~~kT~~~~~~~~t~-nP~w~e~~~f~v~~~~~~-~ 523 (1006)
.|..+.|+|.|++|+||+.+ +..+.+||||+|.+- + .+.||++++ +|+ ||.|||.|.|.+..+..+ .
T Consensus 10 ~p~~~rLtV~VikarnL~~~---~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k---~t~~~P~fNEsF~Fdv~~~~~~v~ 83 (135)
T cd08692 10 QAVNSRIQLQILEAQNLPSS---STPLTLSFFVKVGMFSTGGLLYKKKTRLVK---SSNGQVKWGETMIFPVTQQEHGIQ 83 (135)
T ss_pred cCcCCeEEEEEEEccCCCcc---cCCCCCCcEEEEEEEECCCcceeecCccEE---CCCCCceecceEEEeCCchhheeE
Confidence 34455699999999999976 556677999999882 2 345566544 774 699999999998865433 6
Q ss_pred EEEEEEECCCCccccceeEEEEEecccc
Q 042999 524 LILLVEDRTAKDAAAVILGHAVVPVSSI 551 (1006)
Q Consensus 524 L~v~V~D~~~~~~~d~~lG~~~i~l~~l 551 (1006)
|.|.|||++..+ ++++||++.+.....
T Consensus 84 l~v~v~d~~~~~-~n~~IG~v~lG~~~~ 110 (135)
T cd08692 84 FLIKLYSRSSVR-RKHFLGQVWISSDSS 110 (135)
T ss_pred EEEEEEeCCCCc-CCceEEEEEECCccC
Confidence 889999998644 589999999999764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-13 Score=133.10 Aligned_cols=106 Identities=29% Similarity=0.415 Sum_probs=87.1
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD--G---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|+||...+..|.+||||++.+. + .+++|++++++.||+|||+|.|.+.... .....|.|+|||
T Consensus 13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~-~~~~~l~~~v~d 91 (136)
T cd08405 13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER-LRETTLIITVMD 91 (136)
T ss_pred CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHH-hCCCEEEEEEEE
Confidence 357899999999999998888999999999983 2 3578999999999999999999976421 124579999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
++.+ +++++||++.+++.+. +.....|++|..
T Consensus 92 ~~~~-----~~~~~lG~~~i~~~~~---~~~~~~w~~~~~ 123 (136)
T cd08405 92 KDRL-----SRNDLIGKIYLGWKSG---GLELKHWKDMLS 123 (136)
T ss_pred CCCC-----CCCcEeEEEEECCccC---CchHHHHHHHHh
Confidence 9998 7899999999999873 334456776654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-13 Score=155.98 Aligned_cols=384 Identities=16% Similarity=0.145 Sum_probs=220.9
Q ss_pred EEEEEEEeeCCCC-----CCCcEEEEEECCeeeeeeEeeccCCCCCCCCeeceEEEEeccCC----C---CCCCEEEEEE
Q 042999 298 LFVKIRKARGLVP-----NEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKN----D---SVSATLEITV 365 (1006)
Q Consensus 298 l~V~v~~a~~l~~-----~~dpyv~v~~~~~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~----~---~~~~~l~i~V 365 (1006)
+++.+.+|+.|.+ .+|||+.+.+-++...|-++ .+|+||.|+++..|.-.+. . .....+.++|
T Consensus 208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v-----~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~ 282 (1105)
T KOG1326|consen 208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVV-----PGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEV 282 (1105)
T ss_pred hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEee-----cCcCCCCccceeeccceeecCccchhhcCCCeEEEEe
Confidence 3455567777764 35999999999999999999 9999999999999853322 1 1246788999
Q ss_pred EcCCC---CCccEEEEEeCCcCCCCCCCCCCCcceeEEcccCCCCCCcceeeEEEEEEEeecCCCCcCccccCCCCCCcc
Q 042999 366 WDSPT---ENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNRVSGDIQLAVWIGTQADEAFPEAWSSDAPYVT 442 (1006)
Q Consensus 366 ~D~~~---d~~lG~~~i~l~~l~~~~~~~~~~~~~w~~L~~~~~~~~~~~~g~l~~~~~~~~~~d~~~~~~~~~~~~~~~ 442 (1006)
+|.++ ++++|+......-... +-.-.|+++.... ...|++.++.-.--..- +-.+........
T Consensus 283 yd~dr~g~~ef~gr~~~~p~V~~~------~p~lkw~p~~rg~-----~l~gd~l~a~eliq~~~---~i~~p~~~~~~~ 348 (1105)
T KOG1326|consen 283 YDLDRSGINEFKGRKKQRPYVMVQ------CPALKWVPTMRGA-----FLDGDVLIAAELIQIGK---PIPQPPPQREII 348 (1105)
T ss_pred ehhhhhchHHhhcccccceEEEec------CCccceEEeeccc-----ccccchhHHHHHHhhcC---CCCCCCcccccc
Confidence 99874 8999997654433222 1123788887653 34555543320000000 111111100000
Q ss_pred ccccccccCCceEE--EEEEEEEeecCcccCCCCCCCCCCcEEEEEECCccceeeeeecCCCCCCceecceeeee-eccC
Q 042999 443 HTRSKVYQSPKLWY--LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFV-AAEP 519 (1006)
Q Consensus 443 ~~~~~~~~~p~~~~--L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~-v~~~ 519 (1006)
.....-...|.+.. +.|-...-+|+... .......|-+.+.+|++..++..+. ..-.||.|...+.+. |..|
T Consensus 349 ~~~vp~~iRp~~q~~~~evl~wgLrn~k~~---~m~~~~~P~~~~e~g~e~v~s~~I~--~~k~npnf~s~~~~~~v~lp 423 (1105)
T KOG1326|consen 349 FSLVPKKIRPKTQIGKAELLMWGLRNPKKS---GMASTFSPALLVEFGGERVSSFSIF--NRKKNPNFPSRVLGRLVILP 423 (1105)
T ss_pred eeccccCCCcceeeeeeehhhhhhcccccc---cccccCCcceeEeeCCceEeeeeeh--hhhhCCCCceeEEEEEEecc
Confidence 00000011222222 33332223444322 3344567888889999988888775 455688888765443 3333
Q ss_pred C----CCcEEEEEEECCCCccccceeEEEEEeccc-ccccc-c-c----------------------CcccceEEeCcCC
Q 042999 520 F----EDSLILLVEDRTAKDAAAVILGHAVVPVSS-IDQRI-D-E----------------------RHVASKWFPLEGS 570 (1006)
Q Consensus 520 ~----~~~L~v~V~D~~~~~~~d~~lG~~~i~l~~-l~~~~-~-~----------------------~~~~~~w~~L~~~ 570 (1006)
. ...+.+.|.|.+..+ .-.++|+|.+.-.. ..-++ . + +.....|+.....
T Consensus 424 d~e~Y~ppl~akvvd~~~fg-~~~v~g~c~i~~l~nf~c~p~~~~~~~Pq~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~ 502 (1105)
T KOG1326|consen 424 DEELYMPPLNAKVVDLRQFG-RMEVVGQCKILSLYNFFCDPSAVNSITPQFASDPVSIMMGSTDNEIRHCNSSTLPASPH 502 (1105)
T ss_pred chHhhCccceeEEEeccccc-ceeehhhhcchhhhhhccCchhhcccCcCCCCCchhhhcCCchhhhhhccccCCCCCcc
Confidence 3 237899999998654 57788888875322 11000 0 0 0000011111110
Q ss_pred CC-----------------CC-Cccc--eeeeEEEEEeee----------------------CCc--ccccccc------
Q 042999 571 CG-----------------RG-CARS--YCGRIQLKLCLE----------------------GGY--HVLDEAA------ 600 (1006)
Q Consensus 571 ~~-----------------~~-~~~~--~~G~l~l~v~l~----------------------~~~--~~~d~~~------ 600 (1006)
.. .+ +... .+....+.|+-. |.. .-.++..
T Consensus 503 ~~~~e~~~~~w~k~~~~~~~~~k~~~~~~K~~~~LKiyn~ele~v~ef~~l~D~~~~f~l~rG~~~~e~~e~~Ivg~fKg 582 (1105)
T KOG1326|consen 503 EDEEEREVDWWGKFYPSAEENAKWEVYEHKINVTLKIYNMELEMVAEFRGLQDWAVTFKLYRGKEGLECLEQQIVGEFKG 582 (1105)
T ss_pred ccccceehhhhhhccccccccccccccccccceEEEEehhhhhhHHHHhhhhhccceeEeeeccccCCCcccchhhhhhc
Confidence 00 00 1111 111122332210 000 0000000
Q ss_pred ----ccCC-CC-Ccc-ccc---cC--CCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEE--EeecccCCC
Q 042999 601 ----HVCS-DF-RPT-AKQ---LW--KPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWV--RTRTITDCF 666 (1006)
Q Consensus 601 ----~~~~-~~-~p~-~~~---l~--~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~--rT~~~~~~~ 666 (1006)
+..+ +. .|. .++ +- .+-.-.++|.|++|.+|.+. |. +|.+|||+++.+|++.. ++..+.+|+
T Consensus 583 l~rIyp~~~~~~~p~~pr~~~~~~~~~pi~~LvrVyvv~A~~L~p~---D~-ng~adpYv~l~lGk~~~~d~~~yip~tl 658 (1105)
T KOG1326|consen 583 LFRIYPVPRNPSSPAPPRHFLDLPKEEPIKCLVRVYVVEAFSLQPS---DG-NGDADPYVKLLLGKKRTLDRAHYIPNTL 658 (1105)
T ss_pred ceeeecCCCccCCCCChhhhhcccccCcceeeEEEEEEEeeecccc---CC-CCCcCceeeeeeccchhhhhhhcCcCCC
Confidence 0000 00 000 011 10 13345678999999999884 56 99999999999999885 667899999
Q ss_pred CCeeccEEEEEEeCCC-cEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccc
Q 042999 667 DPRWNEQYTWQVYDPC-TVLTVGVFDNWRMFADASEERPDYRIGKIRIRVST 717 (1006)
Q Consensus 667 nP~wne~~~~~v~~~~-~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~ 717 (1006)
||++.+.|++....|. ..++++|||+|..+ .|+.+|...|.|..
T Consensus 659 nPVfgkmfel~~~lp~ek~l~v~vyd~D~~~-------~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 659 NPVFGKMFELECLLPFEKDLIVEVYDHDLEA-------QDEKIGETTIDLEN 703 (1105)
T ss_pred CcHHHHHHHhhcccchhhcceeEEEEeeccc-------ccchhhceehhhhh
Confidence 9999999999988865 47899999999987 89999999999863
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=124.48 Aligned_cols=117 Identities=24% Similarity=0.352 Sum_probs=95.7
Q ss_pred cEEEEEEEEecCCCCCC--CCCCCCcEEEEEEC------CeEEEeeCcCCCC-CCeeeeEEEEEeeCCCCCCCceEEEEE
Q 042999 16 RKLVVEVVDARDLLPKD--GQGSSSPYVIADFD------GQRKRTSTKFRDL-NPVWNEPLEFIVSDPKNMDCEELEIEV 86 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~--~~g~~dPyv~v~~~------~~~~kT~~~~~t~-nP~wne~f~f~~~~~~~~~~~~L~i~V 86 (1006)
..|+|+|++|++|+..+ ..+.+||||++++. ..+.+|+++.++. ||.|||+|.|.+.... ...|.|+|
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~---~~~l~~~V 78 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE---LAFLRFVV 78 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC---eEEEEEEE
Confidence 47999999999999887 47889999999993 4568999987765 9999999999988643 35799999
Q ss_pred EeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 87 YNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 87 ~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
||++.. ++++||.+.++++++ ..+ ..|++|.+........|.|.+.+.+
T Consensus 79 ~d~~~~------~~~~iG~~~~~l~~l-~~g---~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 79 YDEDSG------DDDFLGQACLPLDSL-RQG---YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EeCCCC------CCcEeEEEEEEhHHh-cCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence 999876 789999999999986 332 3688988655444457999988865
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.3e-13 Score=125.64 Aligned_cols=99 Identities=22% Similarity=0.311 Sum_probs=83.1
Q ss_pred EEEEecCCCCCCCCCCCCcEEEEEECCe-------EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC--
Q 042999 21 EVVDARDLLPKDGQGSSSPYVIADFDGQ-------RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR-- 91 (1006)
Q Consensus 21 ~v~~a~~L~~~~~~g~~dPyv~v~~~~~-------~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~-- 91 (1006)
-.++|++|+.++..|.+||||++++.+. .++|+++++++||+|||+|.|.+.... ...|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~---~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE---VQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe---eeEEEEEEEEecCCc
Confidence 4588999999998899999999999754 389999999999999999999865432 4589999999997
Q ss_pred --CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 92 --YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 92 --~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
. +++++||++.+++++++. +.....|++|..
T Consensus 82 ~~~-----~~~d~iG~~~i~l~~l~~-~~~~~~~~~l~~ 114 (120)
T cd04048 82 KDL-----SDHDFLGEAECTLGEIVS-SPGQKLTLPLKG 114 (120)
T ss_pred CCC-----CCCcEEEEEEEEHHHHhc-CCCcEEEEEccC
Confidence 6 689999999999999754 334456888843
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.8e-13 Score=126.91 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=84.9
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---C---EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---K---KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTV 687 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~---~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i 687 (1006)
..|.|.|+|++|+||++++ . .|.+||||++.+. + .+.||++++++.||+|||+|.|++.. ....|.|
T Consensus 13 ~~~~L~V~VikarnL~~~~---~-~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 13 LTGRLSVEVIKGSNFKNLA---M-NKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred CCCeEEEEEEEecCCCccc---c-CCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 5689999999999999864 4 7789999999983 2 25699999999999999999999874 4458999
Q ss_pred EEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 688 GVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 688 ~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
+|||.+.++ ++++||.+.|++.....+ ..++|+.+..
T Consensus 89 ~V~~~~~~~-------~~~~iG~v~l~~~~~~~~-~~~hW~~~l~ 125 (138)
T cd08408 89 SVYNKRKMK-------RKEMIGWFSLGLNSSGEE-EEEHWNEMKE 125 (138)
T ss_pred EEEECCCCC-------CCcEEEEEEECCcCCCch-HHHHHHHHHh
Confidence 999999876 899999999998754321 2257777743
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-12 Score=146.86 Aligned_cols=176 Identities=19% Similarity=0.259 Sum_probs=122.6
Q ss_pred cccchHhhHHHHHHHHHHHHHHHHHH---HHhhccccccCcchhhHHHHHHHHHhhcCcchh--HHHHHHHHHHhhhccc
Q 042999 818 HAWSMRKSKANWFRIVAVLAWAIGLA---KWLHNIRRWKNPVTTVLVHVLYLVLVWYPDLIV--PTGFLYVVLIGVWYYR 892 (1006)
Q Consensus 818 ~~fs~~~~~~n~~rl~~~l~~~~~~~---~~~~~~~~W~~p~~t~~~~~~~~~~~~~p~l~~--~~~~l~~~~~~~~~~~ 892 (1006)
|.+|+.+|.+|+.+|.+.+..++.++ +.+.++++|++|..|+.++++|+++|++|.+.+ ..+++.++++|+..|.
T Consensus 1 p~lS~~ll~~n~~~l~~~l~~~f~~~~~~d~vl~il~W~~p~~t~~~L~l~t~~~l~p~l~l~~lp~~~ll~~il~~~yl 80 (359)
T PF06398_consen 1 PPLSSPLLSSNFPRLSSRLGPIFPFQLILDRVLRILTWTNPDYTLSFLLLYTFLCLNPYLLLLSLPLGLLLFGILLPSYL 80 (359)
T ss_pred CCcChHHHHhChHHHHHHHHHhhHHHHHHHHHHHeEEeCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999 999999999999999999999999999999843 2333344455555555
Q ss_pred cCCCCCCCCCCccccCCCCCCCCCCccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhh----hccccC
Q 042999 893 FRPKIPSGMDTRLSQAETVDPDELDEEFDTIPSSKPPEIIRMRYDRLRMLAARVQTVLGDFATQGERVQA----LVSWRD 968 (1006)
Q Consensus 893 ~~~~~~~~~~~~~s~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~l~~~~~~vQ~~l~~~a~~~e~i~~----~~~w~~ 968 (1006)
.+...+.. .... +. .+.+.+....|+ +......+...++.+||.|+.+.+.++.+.. +++|++
T Consensus 81 ~~~p~~~~--~~~~--~~---~~~~~~~~~~pt------l~~~s~e~~~nL~dlQn~m~~~~~~~d~~~~~~~~~~~f~~ 147 (359)
T PF06398_consen 81 YRHPSPTS--SLPK--SY---EDHNPEPSEGPT------LDKPSREIVMNLRDLQNKMEDLSDPYDFLSSFLYPYLNFSD 147 (359)
T ss_pred eecCCCcc--cccc--cc---cccCCCcCCCCC------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Confidence 54311111 0000 00 000011010111 1101223344455689999999888888874 457999
Q ss_pred chhHHHHHHHHHHHHHHhh----hhhhHHHHHHHh-hhhccCC
Q 042999 969 PRATKLFIGVCTVITLVLY----VVPPKMVAVALG-FYYLRHP 1006 (1006)
Q Consensus 969 p~~t~~~~~~l~~~~~~l~----~iP~r~i~l~~~-~~~~~hP 1006 (1006)
+..|.+++++|+++.+.++ +||+|++++++| +.++.||
T Consensus 148 e~~s~~~f~~l~~~~~~~~l~~~~ip~r~~ll~~g~~~l~~Hp 190 (359)
T PF06398_consen 148 ENLSSLIFLLLLLSPILLLLLSPFIPWRFVLLVSGAFVLLYHP 190 (359)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhhcCC
Confidence 9999999988888777665 479999999987 7777887
|
Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p []. |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.8e-13 Score=130.29 Aligned_cols=106 Identities=30% Similarity=0.431 Sum_probs=86.2
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD--G---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|+|+|++|++|++++..|.+||||++.+. + .+++|+++++++||.|||+|.|.+.... .....|.|+|||
T Consensus 12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~-~~~~~l~~~v~d 90 (134)
T cd08403 12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPEN-VDNVSLIIAVVD 90 (134)
T ss_pred CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHH-hCCCEEEEEEEE
Confidence 357899999999999999988999999999984 2 3579999999999999999999976532 224579999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
++.. +++++||++.+++.. .+.....|+.+..
T Consensus 91 ~~~~-----~~~~~IG~~~l~~~~---~~~~~~~w~~~~~ 122 (134)
T cd08403 91 YDRV-----GHNELIGVCRVGPNA---DGQGREHWNEMLA 122 (134)
T ss_pred CCCC-----CCCceeEEEEECCCC---CCchHHHHHHHHH
Confidence 9998 789999999998763 2333446776643
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-13 Score=130.97 Aligned_cols=106 Identities=28% Similarity=0.373 Sum_probs=87.1
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|+||...+ .+.+||||++.+.. .+++|++++++.||+|||+|.|.+... .+....|.|+|||+
T Consensus 14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~-~l~~~~L~~~V~~~ 91 (137)
T cd08409 14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSR-QLDTASLSLSVMQS 91 (137)
T ss_pred CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHH-HhCccEEEEEEEeC
Confidence 468999999999999988 78899999999852 357999999999999999999998653 23357899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
+.. +++++||++.++.... ..+....+|..+..
T Consensus 92 ~~~-----~~~~~lG~v~ig~~~~-~~~~~~~hW~~~~~ 124 (137)
T cd08409 92 GGV-----RKSKLLGRVVLGPFMY-ARGKELEHWNDMLS 124 (137)
T ss_pred CCC-----CCcceEEEEEECCccc-CCChHHHHHHHHHh
Confidence 988 7899999999986542 44445556777654
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-13 Score=141.84 Aligned_cols=226 Identities=16% Similarity=0.129 Sum_probs=162.6
Q ss_pred EEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC-----ccceeeeeecCCCCCCceecceee--eeeccCC-CCcEEEE
Q 042999 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL-----QSARTRRGSMNNHSSSFHWHEDVF--FVAAEPF-EDSLILL 527 (1006)
Q Consensus 456 ~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~-----~~~kT~~~~~~~~t~nP~w~e~~~--f~v~~~~-~~~L~v~ 527 (1006)
.+..++..|++|.+| +.++..|||++..++. .+++|++.. +++||.|+|... +...++. ...+++.
T Consensus 94 ~~~~tl~~a~~lk~~---~~~~~~d~~~~~~llpga~kl~slr~~t~~---n~lN~~w~etev~~~i~~~~~~~K~~Rk~ 167 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPM---DINGLADPYVKLHLLPGAGKLNSLRTKTTR---NTLNPEWNETEVYEGITDDDTHLKVLRKV 167 (362)
T ss_pred hcceeechhcccchh---hhhhhcchHHhhhcccchhhhhhhhHHhhc---cCcCcceeccceecccccchhhhhhhhee
Confidence 378899999999998 8899999999999953 456777654 999999999753 4444443 3478999
Q ss_pred EEECCCCccccceeEEEEEeccccccccccCcccceEEeCcCCCCC--CCccceeeeEEEEEeeeCCccccccccccCCC
Q 042999 528 VEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGR--GCARSYCGRIQLKLCLEGGYHVLDEAAHVCSD 605 (1006)
Q Consensus 528 V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~--~~~~~~~G~l~l~v~l~~~~~~~d~~~~~~~~ 605 (1006)
|+|.+... +.+++|+..+.+..+..... .....|+.-..+.+. ....+.+|++.+++.+.
T Consensus 168 vcdn~~~~-~~~sqGq~r~~lkKl~p~q~--k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--------------- 229 (362)
T KOG1013|consen 168 VCDNDKKT-HNESQGQSRVSLKKLKPLQR--KSFNICLEKSLPSERADRDEDEERGAILISLAYS--------------- 229 (362)
T ss_pred eccCcccc-cccCcccchhhhhccChhhc--chhhhhhhccCCcccccccchhhccceeeeeccC---------------
Confidence 99999765 68999999999888875432 334456554443211 11224456666554221
Q ss_pred CCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CE--EEEeecccCCCCCeeccEEEEEEeC
Q 042999 606 FRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KK--WVRTRTITDCFDPRWNEQYTWQVYD 680 (1006)
Q Consensus 606 ~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~--~~rT~~~~~~~nP~wne~~~~~v~~ 680 (1006)
....-|.+++++|..|..+|. +|.+||||..++. ++ ..+|.+.++++||++|++|.|.+..
T Consensus 230 ----------s~~~~l~vt~iRc~~l~ssDs----ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~p 295 (362)
T KOG1013|consen 230 ----------STTPGLIVTIIRCSHLASSDS----NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGP 295 (362)
T ss_pred ----------cCCCceEEEEEEeeeeecccc----CCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCc
Confidence 134568899999999999875 8889999999884 22 4578899999999999999998875
Q ss_pred ---CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEE
Q 042999 681 ---PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSY 728 (1006)
Q Consensus 681 ---~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~ 728 (1006)
....+.|.|||++... ..+++|-+..-+. ..+....+|+
T Consensus 296 gdLa~~kv~lsvgd~~~G~-------s~d~~GG~~~g~~--rr~~v~~h~g 337 (362)
T KOG1013|consen 296 GDLAYKKVALSVGDYDIGK-------SNDSIGGSMLGGY--RRGEVHKHWG 337 (362)
T ss_pred cchhcceEEEeecccCCCc-------CccCCCccccccc--ccchhhcCcc
Confidence 3458999999998754 5778887554433 3333334444
|
|
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=118.84 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=68.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC---
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND--- 89 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~--- 89 (1006)
|.|+|++|++|. +.+||||++.++. .+.+|+++++|+||+|||+|.|.+.. ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-----s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-----SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-----CCEEEEEEEEcccc
Confidence 679999999994 5699999999962 45999999999999999999999874 45899999998
Q ss_pred ----CCCCCCCCCCCceeEEEEEeCee
Q 042999 90 ----KRYCNGSGRKNHFLGRVKLCGSQ 112 (1006)
Q Consensus 90 ----d~~~~~~~~~d~~lG~~~v~l~~ 112 (1006)
|.. ++|+++|.+.+.++-
T Consensus 71 ~~~~d~~-----~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 71 KVKLDGE-----GTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccc-----CcccEEEEEEEEECH
Confidence 455 689999998888763
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-13 Score=129.31 Aligned_cols=107 Identities=33% Similarity=0.484 Sum_probs=90.5
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+..+..+.+||||++++.. .+++|+++.++.||.|||+|.|.+.... +....|.|+|||.
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~-l~~~~l~~~v~d~ 91 (134)
T cd00276 13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQ-LEEVSLVITVVDK 91 (134)
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHH-hCCcEEEEEEEec
Confidence 468999999999999988888999999999963 2579999999999999999999987642 1246899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
+.. +++++||.+.+++++ .+....+|++|....
T Consensus 92 ~~~-----~~~~~lG~~~i~l~~---~~~~~~~W~~l~~~~ 124 (134)
T cd00276 92 DSV-----GRNEVIGQVVLGPDS---GGEELEHWNEMLASP 124 (134)
T ss_pred CCC-----CCCceeEEEEECCCC---CCcHHHHHHHHHhCC
Confidence 987 689999999999998 345556899987653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=122.87 Aligned_cols=94 Identities=26% Similarity=0.440 Sum_probs=79.6
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+..+..+.+||||++.+. ....+|++++++.||+|||+|.|.........+..|.|+|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 46899999999999998888899999999983 2468999999999999999999964332222256899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFA 114 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~ 114 (1006)
+.. ++++||.+.++++++.
T Consensus 94 ~~~------~~~~iG~~~i~l~~l~ 112 (123)
T cd04035 94 DRF------GNDFLGETRIPLKKLK 112 (123)
T ss_pred CCc------CCeeEEEEEEEcccCC
Confidence 887 6899999999999964
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-13 Score=147.00 Aligned_cols=127 Identities=29% Similarity=0.490 Sum_probs=110.0
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
..+.++|++|.+|..+|..|++||||.+.++..+++|+++...+||+|||.|+|.++.. ...|.+.|||.|....+
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechns----tdrikvrvwded~dlks 370 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNS----TDRIKVRVWDEDNDLKS 370 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCC----CceeEEEEecCcccHHH
Confidence 57899999999999999999999999999999999999999999999999999999987 56899999998754211
Q ss_pred ------CCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 96 ------SGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 96 ------~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
.+-+|||||+..|.+..+ .+..+.||.|+++..++.+.|-|++.|...-..
T Consensus 371 klrqkl~resddflgqtvievrtl---sgemdvwynlekrtdksavsgairlhisveikg 427 (1283)
T KOG1011|consen 371 KLRQKLTRESDDFLGQTVIEVRTL---SGEMDVWYNLEKRTDKSAVSGAIRLHISVEIKG 427 (1283)
T ss_pred HHHHHhhhcccccccceeEEEEec---ccchhhhcchhhccchhhccceEEEEEEEEEcC
Confidence 124789999999988874 245568999999999999999999988876654
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=120.31 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=76.6
Q ss_pred EEEeeccCCccCccCCCCCCCCCeEEEEEECC------EEEEeecccCCCCCeeccEEEEEEeC-----CCcEEEEEEEE
Q 042999 623 LGILGARGLLPMKTKNGGKGSTDAYCVAKYGK------KWVRTRTITDCFDPRWNEQYTWQVYD-----PCTVLTVGVFD 691 (1006)
Q Consensus 623 v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~------~~~rT~~~~~~~nP~wne~~~~~v~~-----~~~~l~i~v~d 691 (1006)
+-.++|++|++++ . .|++||||++.+.+ ...||+++++++||+|| +|.|++.+ +...|.|+|||
T Consensus 4 ~~~i~a~~L~~~d---~-~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d 78 (110)
T cd04047 4 ELQFSGKKLDKKD---F-FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYD 78 (110)
T ss_pred EEEEEeCCCCCCC---C-CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEE
Confidence 4467999998854 4 78999999999853 25799999999999999 78887643 35689999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEe
Q 042999 692 NWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730 (1006)
Q Consensus 692 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L 730 (1006)
++..+ +|++||++.+++.+|..++ ..++.+
T Consensus 79 ~d~~~-------~d~~iG~~~~~l~~l~~~~--~~~~~~ 108 (110)
T cd04047 79 YDSSG-------KHDLIGEFETTLDELLKSS--PLEFEL 108 (110)
T ss_pred eCCCC-------CCcEEEEEEEEHHHHhcCC--CceEEe
Confidence 99887 8999999999999998554 344443
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-12 Score=149.17 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=109.8
Q ss_pred cEEEEEEEeeccCCccCcc--------------CCCCCCCCCeEEEEEECCEEE-EeecccCC-CCCeeccEEEEEEeCC
Q 042999 618 VGILELGILGARGLLPMKT--------------KNGGKGSTDAYCVAKYGKKWV-RTRTITDC-FDPRWNEQYTWQVYDP 681 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~--------------~d~~~g~sdpyv~v~~~~~~~-rT~~~~~~-~nP~wne~~~~~v~~~ 681 (1006)
-|.|.|+|++|++|++++. ...+.+.|||||.|.+++.++ ||+++.+. .||+|||.|.+++.++
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 4899999999999987420 112256889999999987765 99999885 6999999999999999
Q ss_pred CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 682 CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 682 ~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
.+.++|+|.|.|.++ ..+||++.||+.+|..|...+.||++.+...+..+....|+++++|.+-
T Consensus 87 ~~~v~f~vkd~~~~g--------~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~ 150 (808)
T PLN02270 87 ASNIIFTVKDDNPIG--------ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEV 150 (808)
T ss_pred cceEEEEEecCCccC--------ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEc
Confidence 999999999999987 5699999999999999999999999998766555544699999999974
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-12 Score=164.82 Aligned_cols=119 Identities=14% Similarity=0.272 Sum_probs=99.6
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCe-EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQ-RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
.|.|+|+|++|+||. +..|++||||++.++++ ++||++++++.||+|||.|+|.+..+.. +..|+|+|||+|.+
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~--~~~l~iev~d~d~f- 2053 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPK--GQKLHISCKSKNTF- 2053 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCC--CCceEEEEEecCcc-
Confidence 589999999999997 33689999999999965 7899999999999999999999888642 46799999999999
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEE---EEEEEEEEe
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGE---IGLRIYYYD 147 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~---i~l~~~~~~ 147 (1006)
+++.||.+++++.+++. +.....||+|.+.+.+ .|+ |.+++.|.+
T Consensus 2054 -----~kd~~G~~~i~l~~vv~-~~~~~~~~~L~~~~~k---~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2054 -----GKSSLGKVTIQIDRVVM-EGTYSGEYSLNPESNK---DGSSRTLEIEFQWSN 2101 (2102)
T ss_pred -----CCCCCceEEEEHHHHhc-CceeeeeeecCccccc---CCCcceEEEEEEecC
Confidence 45599999999999754 4455679999865433 466 888888864
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-12 Score=142.36 Aligned_cols=127 Identities=27% Similarity=0.402 Sum_probs=103.5
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCc
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFA 697 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 697 (1006)
...++++|+.|+||.+.| . .|+|||||.+.+|....||++|..++||+|||.|.|.+.+..+.|.+.|||+|..-.
T Consensus 294 sakitltvlcaqgl~akd---k-tg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlk 369 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKD---K-TGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLK 369 (1283)
T ss_pred ceeeEEeeeecccceecc---c-CCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHH
Confidence 357889999999999854 4 899999999999999999999999999999999999999999999999999987542
Q ss_pred CCC----CCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 698 DAS----EERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 698 ~~~----~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
++- ..-+|||||+..|.+..|.-. .+.||.|..+..+.. -.|.|+|.+...
T Consensus 370 sklrqkl~resddflgqtvievrtlsge--mdvwynlekrtdksa-vsgairlhisve 424 (1283)
T KOG1011|consen 370 SKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEKRTDKSA-VSGAIRLHISVE 424 (1283)
T ss_pred HHHHHHhhhcccccccceeEEEEecccc--hhhhcchhhccchhh-ccceEEEEEEEE
Confidence 110 223799999999999988643 389999976554432 348887765554
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.7e-12 Score=115.20 Aligned_cols=90 Identities=24% Similarity=0.325 Sum_probs=74.7
Q ss_pred EEEEEEecCCCCCCCCCCCCcEEEEEECCe------EEEeeCcCCCCCCeeeeEEEEEeeCCCCC-CCceEEEEEEeCCC
Q 042999 19 VVEVVDARDLLPKDGQGSSSPYVIADFDGQ------RKRTSTKFRDLNPVWNEPLEFIVSDPKNM-DCEELEIEVYNDKR 91 (1006)
Q Consensus 19 ~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~------~~kT~~~~~t~nP~wne~f~f~~~~~~~~-~~~~L~i~V~d~d~ 91 (1006)
.+-.++|++|+.++..|.+||||++++.++ .++|+++++++||+|| +|.|.+...... ....|.|+|||++.
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 345679999999999999999999998543 4899999999999999 788875432111 14689999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeee
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFA 114 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~ 114 (1006)
. ++|++||++.++++++.
T Consensus 82 ~-----~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 82 S-----GKHDLIGEFETTLDELL 99 (110)
T ss_pred C-----CCCcEEEEEEEEHHHHh
Confidence 8 78999999999999975
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-11 Score=106.66 Aligned_cols=82 Identities=38% Similarity=0.719 Sum_probs=73.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDG---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
|+|+|++|++|...+..+..||||++.+++ ..++|+++.++.+|.|+|+|.|.+.... ...|.|+|||++..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~~~V~~~~~~-- 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD---LDSLSFEVWDKDSF-- 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC---GTEEEEEEEEETSS--
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc---ccceEEEEEECCCC--
Confidence 789999999999988888999999999976 6799999999999999999999977654 34599999999999
Q ss_pred CCCCCCceeEEEE
Q 042999 95 GSGRKNHFLGRVK 107 (1006)
Q Consensus 95 ~~~~~d~~lG~~~ 107 (1006)
+++++||++.
T Consensus 76 ---~~~~~iG~~~ 85 (85)
T PF00168_consen 76 ---GKDELIGEVK 85 (85)
T ss_dssp ---SSEEEEEEEE
T ss_pred ---CCCCEEEEEC
Confidence 6799999874
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-11 Score=105.22 Aligned_cols=81 Identities=25% Similarity=0.406 Sum_probs=71.4
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECC---EEEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCCCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK---KWVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWRMF 696 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~---~~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~~~ 696 (1006)
|+|+|++|+||+..+ . .+..||||++.+++ ...+|+++.++.+|.|||+|.|++.. ....|.|+|||++..+
T Consensus 1 L~v~I~~a~~L~~~~---~-~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~ 76 (85)
T PF00168_consen 1 LTVTIHSARNLPSKD---S-NGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFG 76 (85)
T ss_dssp EEEEEEEEESSSSSS---T-TSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSS
T ss_pred CEEEEEEEECCCCcc---c-CCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCC
Confidence 789999999998743 4 77899999999976 78999999999999999999999765 4457999999999887
Q ss_pred cCCCCCCCCceeEEEE
Q 042999 697 ADASEERPDYRIGKIR 712 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~ 712 (1006)
+|++||++.
T Consensus 77 -------~~~~iG~~~ 85 (85)
T PF00168_consen 77 -------KDELIGEVK 85 (85)
T ss_dssp -------SEEEEEEEE
T ss_pred -------CCCEEEEEC
Confidence 799999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-11 Score=125.84 Aligned_cols=94 Identities=24% Similarity=0.311 Sum_probs=78.2
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
...+.+++.+|++|.+++.++..|||++..+.. .+.+|++..+++||.|+|+.....-.........+++.|.|.
T Consensus 92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn 171 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN 171 (362)
T ss_pred hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence 457899999999999999999999999999952 348899999999999999877664433333356788999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQF 113 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l 113 (1006)
+.+ ..++++|+..+++..+
T Consensus 172 ~~~-----~~~~sqGq~r~~lkKl 190 (362)
T KOG1013|consen 172 DKK-----THNESQGQSRVSLKKL 190 (362)
T ss_pred ccc-----ccccCcccchhhhhcc
Confidence 988 6889999999888775
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-10 Score=102.15 Aligned_cols=99 Identities=29% Similarity=0.487 Sum_probs=85.0
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECCCCCcC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNWRMFAD 698 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~~~~~~ 698 (1006)
|.|.|++|++|.... . .+..||||.+.+.+ ...+|+++.++.||.||+.|.|++.. ....|.|.|||.+..+
T Consensus 1 l~v~i~~~~~l~~~~---~-~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~-- 74 (102)
T cd00030 1 LRVTVIEARNLPAKD---L-NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFS-- 74 (102)
T ss_pred CEEEEEeeeCCCCcC---C-CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCC--
Confidence 578999999997643 2 56799999999987 88999999999999999999999988 6778999999998765
Q ss_pred CCCCCCCceeEEEEEEccccc-CCceEeeEEEe
Q 042999 699 ASEERPDYRIGKIRIRVSTLE-NNKVYTTSYPL 730 (1006)
Q Consensus 699 ~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L 730 (1006)
.+.+||.+.+++..+. .......|++|
T Consensus 75 -----~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 75 -----KDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred -----CCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 6889999999999998 55555677764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-11 Score=134.04 Aligned_cols=138 Identities=24% Similarity=0.429 Sum_probs=110.1
Q ss_pred CCCCCCCCCCcccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC------C-------e------------------EEEe
Q 042999 4 PSQPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD------G-------Q------------------RKRT 52 (1006)
Q Consensus 4 p~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~------~-------~------------------~~kT 52 (1006)
+..+.++| ...|.|.+.+|+||.++|.+|.+|||+...+- + + -+-|
T Consensus 105 ~v~~~k~P---~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkat 181 (1103)
T KOG1328|consen 105 KVKQNKPP---SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKAT 181 (1103)
T ss_pred cccCCCCC---cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhc
Confidence 44555555 44566999999999999999999999998772 0 1 0568
Q ss_pred eCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC-------------------------------CCCCCCCc
Q 042999 53 STKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC-------------------------------NGSGRKNH 101 (1006)
Q Consensus 53 ~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~-------------------------------~~~~~~d~ 101 (1006)
+++++|+||+|+|.|.|.+.+.. ...+++.+||+|.-. ++-...||
T Consensus 182 svk~~TLnPkW~EkF~F~IeDv~---tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDD 258 (1103)
T KOG1328|consen 182 SVKKKTLNPKWSEKFQFTIEDVQ---TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDD 258 (1103)
T ss_pred ccccccCCcchhhheeeehhccc---cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccc
Confidence 88999999999999999998854 568999999987542 21224489
Q ss_pred eeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 102 FLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 102 ~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
|||++.+++.++- ....++||.|++++..++++|.+++.+......
T Consensus 259 FLGciNipl~EiP--~~Gld~WFkLepRS~~S~VqG~~~LklwLsT~e 304 (1103)
T KOG1328|consen 259 FLGCINIPLAEIP--PDGLDQWFKLEPRSDKSKVQGQVKLKLWLSTKE 304 (1103)
T ss_pred cccccccchhcCC--cchHHHHhccCcccccccccceEEEEEEEeeec
Confidence 9999999999963 334568999999999999999999999877654
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.4e-10 Score=103.49 Aligned_cols=93 Identities=23% Similarity=0.281 Sum_probs=77.9
Q ss_pred EEEEEeeccCCccCccCCCCCC--CCCeEEEEEEC---CEEEEeecccCCCC--CeeccEEEEEEeCC------------
Q 042999 621 LELGILGARGLLPMKTKNGGKG--STDAYCVAKYG---KKWVRTRTITDCFD--PRWNEQYTWQVYDP------------ 681 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g--~sdpyv~v~~~---~~~~rT~~~~~~~n--P~wne~~~~~v~~~------------ 681 (1006)
|+|.|.+|+|++..+. +. .| .+||||++.+. .+..+|.+.++++| |.||+.|.|++..+
T Consensus 2 LRViIw~~~~v~~~~~-~~-~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 2 LRVIVWNTRDVLNDDT-NI-TGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred EEEEEEECcCCccccc-cc-CCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 7999999999776543 33 34 59999999985 35689999999998 99999999987541
Q ss_pred ------------CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCc
Q 042999 682 ------------CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNK 722 (1006)
Q Consensus 682 ------------~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~ 722 (1006)
...|+|+|||+|.++ +|++||.+.++|+.+..+.
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s-------~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFS-------PDDFLGSLELDLSILPRPA 125 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccC-------CCCcceEEEEEhhhccccc
Confidence 247999999999987 8999999999999988765
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-09 Score=99.50 Aligned_cols=91 Identities=29% Similarity=0.469 Sum_probs=79.2
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE---EEEeecccCCCCCeeccEEEEEEeCC-CcEEEEEEEECCCCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK---WVRTRTITDCFDPRWNEQYTWQVYDP-CTVLTVGVFDNWRMF 696 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~---~~rT~~~~~~~nP~wne~~~~~v~~~-~~~l~i~v~d~~~~~ 696 (1006)
|.|.|++|++|.... . .+..+|||.++++.. ..+|+++.++.||.||++|.|++..+ ...|.|+|||++..+
T Consensus 2 l~i~i~~~~~l~~~~---~-~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~ 77 (101)
T smart00239 2 LTVKIISARNLPKKD---K-KGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFG 77 (101)
T ss_pred eEEEEEEeeCCCCCC---C-CCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCcc
Confidence 689999999997643 2 357899999999764 79999999999999999999999887 789999999998765
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCc
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNK 722 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~ 722 (1006)
.+.++|.+.+++.++..+.
T Consensus 78 -------~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 78 -------RDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred -------CCceeEEEEEEHHHcccCc
Confidence 6899999999999987665
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=98.75 Aligned_cols=101 Identities=43% Similarity=0.755 Sum_probs=85.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGS 96 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~ 96 (1006)
|.|+|++|++|......+..+|||.+.+.+ ..++|++..++.||.|||.|.|.+.... ...|.|+|||.+..
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~---~~~l~i~v~~~~~~---- 73 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPE---SDTLTVEVWDKDRF---- 73 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCC---CCEEEEEEEecCCC----
Confidence 579999999998766677899999999987 8899999999999999999999998731 56899999999988
Q ss_pred CCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 97 GRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 97 ~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
+.+++||.+.+++.++.........|++|
T Consensus 74 -~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 74 -SKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred -CCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 57899999999999964244445567764
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=120.72 Aligned_cols=121 Identities=20% Similarity=0.255 Sum_probs=91.2
Q ss_pred cEEEEEEEeeccCCccC--ccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeCCCc-EEEEEE
Q 042999 618 VGILELGILGARGLLPM--KTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYDPCT-VLTVGV 689 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~--~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~~~~-~l~i~v 689 (1006)
...|.|+|+.|++++.- ++.+. ....||||.|.+.+ ...+|.+..++.||+|||+|.|++..|.- .|.|.|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~-~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGR-LSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCC-CCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEE
Confidence 46899999999998621 11122 45689999999843 35678776778999999999999988774 789999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
+|+|... +|+|+|+..+|++.|+.|- +..+|.++...... .-.|.+++.|
T Consensus 487 ~D~D~~~-------~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 487 YDYEVST-------ADAFCGQTCLPVSELIEGI---RAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred EecCCCC-------CCcEEEEEecchHHhcCCc---eeEeccCCCcCCCC-CceEEEEEEe
Confidence 9999765 7899999999999999884 77899875443322 2444444433
|
|
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-09 Score=101.54 Aligned_cols=92 Identities=27% Similarity=0.409 Sum_probs=77.2
Q ss_pred EEEEEEEecCCCCCC--CCC--CCCcEEEEEECC---eEEEeeCcCCCCC--CeeeeEEEEEeeCC--------------
Q 042999 18 LVVEVVDARDLLPKD--GQG--SSSPYVIADFDG---QRKRTSTKFRDLN--PVWNEPLEFIVSDP-------------- 74 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~--~~g--~~dPyv~v~~~~---~~~kT~~~~~t~n--P~wne~f~f~~~~~-------------- 74 (1006)
|+|.|.+|++++..+ ..| .+||||++.+.+ .+++|.++.+++| |.||+.|.|++...
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~ 81 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF 81 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence 789999999965433 355 599999999964 5699999999999 99999999987662
Q ss_pred ------CCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeee
Q 042999 75 ------KNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFA 114 (1006)
Q Consensus 75 ------~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~ 114 (1006)
+......|.++|||.|.+ ++|++||.+.+++..+.
T Consensus 82 ~~~~~~e~~~~~~L~lqvwD~D~~-----s~dd~iG~~~l~l~~l~ 122 (133)
T cd08374 82 WSLDETEYKIPPKLTLQVWDNDKF-----SPDDFLGSLELDLSILP 122 (133)
T ss_pred cccCcceEecCcEEEEEEEECccc-----CCCCcceEEEEEhhhcc
Confidence 223367899999999999 89999999999999863
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=119.82 Aligned_cols=120 Identities=20% Similarity=0.292 Sum_probs=91.8
Q ss_pred cccEEEEEEEEecCCCCC-----CCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEE
Q 042999 14 TVRKLVVEVVDARDLLPK-----DGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELE 83 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~-----~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~ 83 (1006)
....|.|+|+.|.+++.. +.....||||+|.+.| .+++|++..++.||+|||+|.|.+..++ -..|+
T Consensus 407 ~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PE---LAlLr 483 (537)
T PLN02223 407 VVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPD---LALIS 483 (537)
T ss_pred cceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccC---ceEEE
Confidence 357899999999987521 2234679999999953 3478888889999999999999998875 34789
Q ss_pred EEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 84 IEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 84 i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
|+|+|+|.. ++++|+|+..+|+..+ ..| .++++|.+..+..-..-.|.+++.|
T Consensus 484 f~V~D~D~~-----~~ddfiGQ~~LPv~~L-r~G---yR~VpL~~~~g~~l~~~~Ll~~f~~ 536 (537)
T PLN02223 484 FEVYDYEVS-----TADAFCGQTCLPVSEL-IEG---IRAVPLYDERGKACSSTMLLTRFKW 536 (537)
T ss_pred EEEEecCCC-----CCCcEEEEEecchHHh-cCC---ceeEeccCCCcCCCCCceEEEEEEe
Confidence 999999988 6899999999999985 444 4578887655433223466666654
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.96 E-value=7e-09 Score=120.19 Aligned_cols=120 Identities=22% Similarity=0.241 Sum_probs=92.9
Q ss_pred cEEEEEEEeeccCCccCcc---CCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCCC-cEEEEE
Q 042999 618 VGILELGILGARGLLPMKT---KNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVG 688 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~---~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~ 688 (1006)
...|.|+|+.|++|+.... .+. ....||||+|.+- ....+|+++.++.||+|||+|.|++..+. ..|.|.
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~-~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDS-YSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCc-cCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEE
Confidence 4679999999999853211 111 2345999999973 35679999999999999999999998875 578999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
|+|+|..+ .|+++|.+.||++.|..|- +|++|.+.... +.+..+|-++|.
T Consensus 548 V~D~D~~~-------~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~---~l~~a~Llv~f~ 597 (599)
T PLN02952 548 VREYDMSE-------KDDFGGQTCLPVSELRPGI---RSVPLHDKKGE---KLKNVRLLMRFI 597 (599)
T ss_pred EEecCCCC-------CCCeEEEEEcchhHhcCCc---eeEeCcCCCCC---CCCCEEEEEEEE
Confidence 99999876 7999999999999999885 68999765432 225556666654
|
|
| >PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-08 Score=113.60 Aligned_cols=74 Identities=26% Similarity=0.500 Sum_probs=65.5
Q ss_pred ccCCcccchHhhHHHHHHHHH-HHHHHHHHHHHhhccccccCcchhhHHHHHHHHHhhcCcchhHHHHHHHHHHhh
Q 042999 814 DADSHAWSMRKSKANWFRIVA-VLAWAIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWYPDLIVPTGFLYVVLIGV 888 (1006)
Q Consensus 814 ~~~~~~fs~~~~~~n~~rl~~-~l~~~~~~~~~~~~~~~W~~p~~t~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~ 888 (1006)
.++...||...+++|+.||.. ++-.+..+...+.++.+|+.|.+|..++++|+++ |+.++++|+++..++++++
T Consensus 82 ~a~~e~FspdkLRa~lERlY~tv~v~~~~~~khi~RLrSW~eprRT~~fc~vYf~a-W~~dll~p~~~~~L~~li~ 156 (642)
T PF11696_consen 82 IAEDEEFSPDKLRANLERLYMTVVVGLAAFIKHIARLRSWREPRRTAAFCAVYFIA-WLLDLLVPAFFAFLIALIL 156 (642)
T ss_pred ccccccCChHHHHHHhHhheeehHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 356788999999999999988 6678888999999999999999999999999765 8889999998887777766
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.9e-09 Score=121.29 Aligned_cols=125 Identities=18% Similarity=0.288 Sum_probs=102.5
Q ss_pred ccEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEECCeE-EEeeCcCCC-CCCeeeeEEEEEeeCC
Q 042999 15 VRKLVVEVVDARDLLPKD------------------GQGSSSPYVIADFDGQR-KRTSTKFRD-LNPVWNEPLEFIVSDP 74 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~------------------~~g~~dPyv~v~~~~~~-~kT~~~~~t-~nP~wne~f~f~~~~~ 74 (1006)
-|.|.|+|.+|++|++++ ..+++||||.|.+++.+ .||+++.+. .||+|+|+|.+++...
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~ 86 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM 86 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence 478999999999998631 13678999999998755 899999875 6999999999999886
Q ss_pred CCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCc-eeeeEEEEEEEEEEecCc
Q 042999 75 KNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVF-SWIRGEIGLRIYYYDELS 150 (1006)
Q Consensus 75 ~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~-~~~~G~i~l~~~~~~~~~ 150 (1006)
-..+.|.|.|.|.+ +..+||.+.+++.+++ .+...+.||++.....+ .+..-.|++++.|.+...
T Consensus 87 ----~~~v~f~vkd~~~~------g~~~ig~~~~p~~~~~-~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~ 152 (808)
T PLN02270 87 ----ASNIIFTVKDDNPI------GATLIGRAYIPVEEIL-DGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK 152 (808)
T ss_pred ----cceEEEEEecCCcc------CceEEEEEEEEHHHhc-CCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence 46899999999999 6679999999999964 56677889998765433 233359999999999764
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.7e-09 Score=93.62 Aligned_cols=89 Identities=44% Similarity=0.787 Sum_probs=78.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEECCe---EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQ---RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~---~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
|.|+|++|++|......+..+|||++.+... ..+|+++.++.||.|||+|.|.+.... ...|.|+|||.+..
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~-- 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRF-- 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc---cCEEEEEEEecCCc--
Confidence 6899999999988775568999999999864 799999999999999999999988753 56899999999887
Q ss_pred CCCCCCceeEEEEEeCeeee
Q 042999 95 GSGRKNHFLGRVKLCGSQFA 114 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~ 114 (1006)
+.+.++|.+.+++.++.
T Consensus 77 ---~~~~~~G~~~~~l~~~~ 93 (101)
T smart00239 77 ---GRDDFIGQVTIPLSDLL 93 (101)
T ss_pred ---cCCceeEEEEEEHHHcc
Confidence 57899999999988863
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-08 Score=116.89 Aligned_cols=120 Identities=23% Similarity=0.275 Sum_probs=90.3
Q ss_pred cccEEEEEEEEecCCCCC------CCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceE
Q 042999 14 TVRKLVVEVVDARDLLPK------DGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~------~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L 82 (1006)
....|.|+|+.|.+|+.. +.....||||+|.+- ..+++|+++.++.||+|||+|.|.+..++ -.-|
T Consensus 468 ~~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE---LAll 544 (599)
T PLN02952 468 VKKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE---LALL 544 (599)
T ss_pred ccceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC---ccEE
Confidence 357899999999987431 111235999999994 35689999999999999999999988864 3478
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+|.|||+|.. +.++|+|++.+++..+ ..| .+|++|.+..+.....-.+.+++.|
T Consensus 545 rf~V~D~D~~-----~~ddfiGq~~lPv~~L-r~G---yR~VpL~~~~G~~l~~a~Llv~f~~ 598 (599)
T PLN02952 545 RIEVREYDMS-----EKDDFGGQTCLPVSEL-RPG---IRSVPLHDKKGEKLKNVRLLMRFIF 598 (599)
T ss_pred EEEEEecCCC-----CCCCeEEEEEcchhHh-cCC---ceeEeCcCCCCCCCCCEEEEEEEEe
Confidence 9999999988 6899999999999996 444 3589998654333223345555543
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.6e-09 Score=113.97 Aligned_cols=120 Identities=26% Similarity=0.448 Sum_probs=101.2
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeec-cEEEEEEeCC---CcEEEEEEEECCC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWN-EQYTWQVYDP---CTVLTVGVFDNWR 694 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wn-e~~~~~v~~~---~~~l~i~v~d~~~ 694 (1006)
|.|.|+|..|++||.||.. +...|.||.|++++..++|.+..+++||.|| +=|.|.|.|. ..+|.|.+.|+|.
T Consensus 3 gkl~vki~a~r~lpvmdka---sd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt 79 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKA---SDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT 79 (1169)
T ss_pred CcceeEEEeccCCcccccc---cccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence 7899999999999999853 5568999999999999999999999999999 5689999873 4689999999999
Q ss_pred CCcCCCCCCCCceeEEEEEEccccc----------CCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 695 MFADASEERPDYRIGKIRIRVSTLE----------NNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 695 ~~~~~~~~~~d~~lG~~~i~l~~l~----------~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
.+ .+|-||++.|++..|. .|.....|||+.+.- .|. +|+|.+-++..
T Consensus 80 ys-------andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-hgi--rgeinvivkvd 136 (1169)
T KOG1031|consen 80 YS-------ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-HGI--RGEINVIVKVD 136 (1169)
T ss_pred cc-------cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-ccc--cceeEEEEEEe
Confidence 87 7889999999998763 245678999998743 232 49998877654
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=116.28 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=92.0
Q ss_pred cEEEEEEEeeccCCccCccC---CCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCCC-cEEEEE
Q 042999 618 VGILELGILGARGLLPMKTK---NGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVG 688 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~---d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~ 688 (1006)
..+|.|+|+.+++++..... +. ....||||+|.+- ....||++..++.||+|||+|.|++.-|. ..|+|.
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~-~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDS-YSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCC-CCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence 45799999999997532111 12 3357999999982 33568998888999999999999998876 689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
|+|+|... +|+|+|+..||+..|+.|- +..+|.+....... .-.|.+++.|
T Consensus 547 V~d~d~~~-------~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 547 VHEHDINE-------KDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred EEECCCCC-------CCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 99999865 7999999999999999884 56788775443322 2455555554
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-08 Score=114.58 Aligned_cols=121 Identities=20% Similarity=0.224 Sum_probs=91.7
Q ss_pred cEEEEEEEeeccCCc--cCcc-CCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCCC-cEEEEE
Q 042999 618 VGILELGILGARGLL--PMKT-KNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVG 688 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~--~~~~-~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~ 688 (1006)
...|.|+|+.+++++ ..+. .+. ....||||.|.+- ....||+++.++.||+|||.|.|.+..|. ..|+|.
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~-~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQ-YSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCC-CCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEE
Confidence 467999999999853 1111 112 3457999999983 34679999999999999999999998876 589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
|+|+|..+ .|+++|...||++.|+.|- +..+|.+....... .-.|-+.+.|
T Consensus 530 V~d~D~~~-------~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 530 VHEYDMSE-------KDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred EEECCCCC-------CCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 99998765 7899999999999999884 57788775443322 2455555544
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-08 Score=89.34 Aligned_cols=86 Identities=22% Similarity=0.314 Sum_probs=71.1
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-EEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-WVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADA 699 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~ 699 (1006)
|.|+|..|+++.-...... .++.||||+|++++. .+||++ +.||.|||.|.|+| +....+.|.|||....
T Consensus 1 L~I~V~~~RdvdH~~~~~~-~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~V-dk~nEiel~VyDk~~~---- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRF-SKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPV-EKNNEEEVIVYDKGGD---- 71 (109)
T ss_pred CEEEEEEEecCccccchhh-ccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEe-cCCcEEEEEEEeCCCC----
Confidence 5789999999965442224 778899999999866 889998 58999999999999 6788999999998643
Q ss_pred CCCCCCceeEEEEEEccccc
Q 042999 700 SEERPDYRIGKIRIRVSTLE 719 (1006)
Q Consensus 700 ~~~~~d~~lG~~~i~l~~l~ 719 (1006)
..-.||-.-|++++|.
T Consensus 72 ----~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 72 ----QPVPVGLLWLRLSDIA 87 (109)
T ss_pred ----eecceeeehhhHHHHH
Confidence 4568999999999875
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.2e-08 Score=113.10 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=95.2
Q ss_pred cEEEEEEEeeccCCcc---CccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCee-ccEEEEEEeCCC-cEEEE
Q 042999 618 VGILELGILGARGLLP---MKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRW-NEQYTWQVYDPC-TVLTV 687 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~---~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~w-ne~~~~~v~~~~-~~l~i 687 (1006)
...|.|+|++|++|+. .+..+. ....||||.|.+- ....||+++.++.||.| ||.|.|.+..|. ..|+|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~-~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQ-YSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCC-CCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEE
Confidence 3579999999999832 111122 3347999999972 34579999999999999 999999998876 58999
Q ss_pred EEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 688 GVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 688 ~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
.|+|+|..+ .|+++|...||++.|+.|- +..+|.+....... ..+|-+.+.+.+.
T Consensus 509 ~V~D~d~~~-------~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~~~~~ 563 (567)
T PLN02228 509 KVQDYDNDT-------QNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFALDPP 563 (567)
T ss_pred EEEeCCCCC-------CCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEEEcCc
Confidence 999998765 7899999999999998874 56788775443322 3678888777643
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.82 E-value=3e-08 Score=114.83 Aligned_cols=120 Identities=21% Similarity=0.338 Sum_probs=91.3
Q ss_pred cccEEEEEEEEecCCCCC------CCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceE
Q 042999 14 TVRKLVVEVVDARDLLPK------DGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~------~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L 82 (1006)
....|.|+|+.+.+++.. +.....||||+|.+- ..+++|++..++.||+|||+|.|.+..++ -..|
T Consensus 467 ~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE---LAll 543 (598)
T PLN02230 467 PKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE---LALL 543 (598)
T ss_pred cCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc---eeEE
Confidence 457899999999986421 122346999999994 34579999999999999999999998875 3578
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+|+|+|+|.. .+|+|+|+..+++..| ..| .+.++|.+..+..-..-.|.+++.+
T Consensus 544 Rf~V~d~d~~-----~~ddfiGQ~~lPv~~L-r~G---yR~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 544 RVEVHEHDIN-----EKDDFGGQTCLPVSEI-RQG---IHAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEEECCCC-----CCCCEEEEEEcchHHh-hCc---cceEeccCCCcCCCCCCeeEEEEEe
Confidence 9999999987 6899999999999995 443 3467887655433223466666654
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-08 Score=114.44 Aligned_cols=124 Identities=25% Similarity=0.419 Sum_probs=96.6
Q ss_pred CCCcccEEEEEEEEecCCCCCCC----CCCCCcEEEEEECC-----eEEEee-CcCCCCCCeeeeEEEEEeeCCCCCCCc
Q 042999 11 QQFTVRKLVVEVVDARDLLPKDG----QGSSSPYVIADFDG-----QRKRTS-TKFRDLNPVWNEPLEFIVSDPKNMDCE 80 (1006)
Q Consensus 11 ~~~~~~~L~V~v~~a~~L~~~~~----~g~~dPyv~v~~~~-----~~~kT~-~~~~t~nP~wne~f~f~~~~~~~~~~~ 80 (1006)
|.... .|.|.|+.+.++.+.-. +..+||||.|.+.| .+++|+ +..++.||.|+|+|+|.+..++ -.
T Consensus 612 ~~~~~-tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE---LA 687 (746)
T KOG0169|consen 612 PPVKK-TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPE---LA 687 (746)
T ss_pred CCCCc-eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccc---ee
Confidence 33334 89999999997655322 35689999999954 348999 5568999999999999999986 35
Q ss_pred eEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 81 ELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 81 ~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
-|+|.|+|+|.. ++|+|+|+.++|+..+ ..| ..-++|.+..+..-..-+|.+++.+.+
T Consensus 688 liRF~V~d~d~~-----~~ddF~GQ~tlP~~~L-~~G---yRhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 688 LIRFEVHDYDYI-----GKDDFIGQTTLPVSEL-RQG---YRHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EEEEEEEecCCC-----CcccccceeeccHHHh-hCc---eeeeeecCCCCccccceeEEEEEEEec
Confidence 789999999998 7899999999999995 444 345788876555445677778777654
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=106.62 Aligned_cols=182 Identities=18% Similarity=0.154 Sum_probs=125.2
Q ss_pred ccceeeeeecCCCCCCceecceeeeeeccCCCCcEEEEEEECCCC---ccccceeEEEEEeccccccccccCcccceEEe
Q 042999 490 QSARTRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLVEDRTAK---DAAAVILGHAVVPVSSIDQRIDERHVASKWFP 566 (1006)
Q Consensus 490 ~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~~~~L~v~V~D~~~~---~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~ 566 (1006)
+..+|.++. +.+||.|.+.|.+.......+.|++.++|.+.. -...+++|++.+.++.+...... ..-..
T Consensus 41 e~~rte~i~---~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~----~~~l~ 113 (529)
T KOG1327|consen 41 EVGRTEVIR---NVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGL----TGPLL 113 (529)
T ss_pred cccceeeee---ccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhh----hhhhh
Confidence 344677664 899999999998888878888999999998743 11479999999999998754221 11122
Q ss_pred CcCCCCCCCccceeeeEEEEEeeeCCccccccccccCCCCCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCe
Q 042999 567 LEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDA 646 (1006)
Q Consensus 567 L~~~~~~~~~~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdp 646 (1006)
++.. .....|.|.+.+.-.. + + -....-.++|.+|.+ +|. .+++||
T Consensus 114 ~~~~-----~~~~~g~iti~aee~~--~--~---------------------~~~~~~~~~~~~ld~---kd~-f~ksd~ 159 (529)
T KOG1327|consen 114 LKPG-----KNAGSGTITISAEEDE--S--D---------------------NDVVQFSFRAKNLDP---KDF-FSKSDP 159 (529)
T ss_pred cccC-----ccCCcccEEEEeeccc--c--c---------------------CceeeeeeeeeecCc---ccc-cccCCc
Confidence 2211 1112466665542111 0 0 011122345788854 677 999999
Q ss_pred EEEEEE--C-C---EEEEeecccCCCCCeeccEEEEEEe-----CCCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEc
Q 042999 647 YCVAKY--G-K---KWVRTRTITDCFDPRWNEQYTWQVY-----DPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRV 715 (1006)
Q Consensus 647 yv~v~~--~-~---~~~rT~~~~~~~nP~wne~~~~~v~-----~~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l 715 (1006)
|..+.- + + ...||.++++++||.|.+ |.++.. ++...+.|.+||++..+ ++++||++..++
T Consensus 160 ~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~-------~~~~ig~~~tt~ 231 (529)
T KOG1327|consen 160 YLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG-------KHDLIGKFQTTL 231 (529)
T ss_pred ceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC-------CcCceeEecccH
Confidence 998874 2 2 245999999999999954 444432 45678999999999887 889999999999
Q ss_pred ccccC
Q 042999 716 STLEN 720 (1006)
Q Consensus 716 ~~l~~ 720 (1006)
+++..
T Consensus 232 ~~~~~ 236 (529)
T KOG1327|consen 232 SELQE 236 (529)
T ss_pred HHhcc
Confidence 98863
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.9e-08 Score=112.56 Aligned_cols=121 Identities=22% Similarity=0.319 Sum_probs=93.1
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccC-CCCCeeccEEEEEEeCCC-cEEEEEEEEC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITD-CFDPRWNEQYTWQVYDPC-TVLTVGVFDN 692 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~-~~nP~wne~~~~~v~~~~-~~l~i~v~d~ 692 (1006)
+|.|+|+.++|+++......-+..+||||.|++-+ ...+|+++.+ +-||.|+|+|+|.+..|. +-|+|.|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~ 696 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY 696 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence 89999999998766432211035689999999843 3568996664 679999999999999987 5789999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
|..+ +|||+|+..||++.|..|- +-.||.++.+... ...+|-+.+.+.
T Consensus 697 d~~~-------~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~-~~asLfv~i~~~ 744 (746)
T KOG0169|consen 697 DYIG-------KDDFIGQTTLPVSELRQGY---RHVPLLSREGEAL-SSASLFVRIAIV 744 (746)
T ss_pred CCCC-------cccccceeeccHHHhhCce---eeeeecCCCCccc-cceeEEEEEEEe
Confidence 9877 8999999999999999884 5578877543322 236677776664
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-08 Score=109.38 Aligned_cols=122 Identities=27% Similarity=0.419 Sum_probs=101.4
Q ss_pred cEEEEEEEEecCCCCCCC-CCCCCcEEEEEECCeEEEeeCcCCCCCCeee-eEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDG-QGSSSPYVIADFDGQRKRTSTKFRDLNPVWN-EPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~-~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wn-e~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
|.|.|.|+.|++|+-+|. ....|.||.+.+++..++|.+..+++||.|| ++|.|.+.+. +++++.|.|.+.|+|..
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevdda-dlqdeplqi~lld~dty- 80 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDA-DLQDEPLQIRLLDHDTY- 80 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChh-hhccCCeeEEEeccccc-
Confidence 578899999999999986 3567999999999999999999999999999 8999999985 44589999999999999
Q ss_pred CCCCCCCceeEEEEEeCeeeeee---------CCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARR---------GDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~---------~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+.+|-||.+.++++.+.-. +.....||++.+.- ...+|+|.+-+..
T Consensus 81 ----sandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti--hgirgeinvivkv 135 (1169)
T KOG1031|consen 81 ----SANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI--HGIRGEINVIVKV 135 (1169)
T ss_pred ----ccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec--ccccceeEEEEEE
Confidence 7999999999999976321 12223699988643 3468999877664
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-08 Score=110.99 Aligned_cols=120 Identities=20% Similarity=0.262 Sum_probs=90.4
Q ss_pred cccEEEEEEEEecCCC--C--C--CCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceE
Q 042999 14 TVRKLVVEVVDARDLL--P--K--DGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~--~--~--~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L 82 (1006)
....|.|+|+.+.++. . . +.....||||+|.+. ..+++|+++.++.||+|||+|.|.+..++ -.-|
T Consensus 450 ~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe---LAll 526 (581)
T PLN02222 450 VKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE---LALL 526 (581)
T ss_pred ccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc---eeEE
Confidence 3467999999998742 1 1 122456999999994 35689999999899999999999988765 3578
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
+|.|||+|.. +.++|+|+..+++..| ..| .+.++|.+..+..-..-.+.+++.+
T Consensus 527 Rf~V~d~D~~-----~~ddfigq~~lPv~~L-r~G---yR~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 527 RLEVHEYDMS-----EKDDFGGQTCLPVWEL-SQG---IRAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEEECCCC-----CCCcEEEEEEcchhhh-hCc---cceEEccCCCcCCCCCeeEEEEEEe
Confidence 9999999987 6899999999999985 443 4567887655433223466666654
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.9e-08 Score=114.29 Aligned_cols=121 Identities=19% Similarity=0.247 Sum_probs=94.1
Q ss_pred CcEEEEEEEeeccCCccCcc--CCCCCCCCCeEEEEEECCEEE-EeecccCCCCCeeccEEEEEEeCCC-cEEEEEEEEC
Q 042999 617 PVGILELGILGARGLLPMKT--KNGGKGSTDAYCVAKYGKKWV-RTRTITDCFDPRWNEQYTWQVYDPC-TVLTVGVFDN 692 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~--~d~~~g~sdpyv~v~~~~~~~-rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~v~d~ 692 (1006)
--|+|.++|++|+-+...-. ...+.+ .||||.|.+++.++ || .+..||+|||.|.+++.++. +.++|+|.|
T Consensus 8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~-~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~- 82 (758)
T PLN02352 8 FHGTLEATIFDATPYTPPFPFNCIFLNG-KATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT- 82 (758)
T ss_pred cccceEEEEEEeeehhhcccccccccCC-CCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec-
Confidence 35899999999983322100 011122 39999999987765 88 56669999999999999987 789999998
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCce-EeeEEEeeeeccCCcccccEEEEEEEEecCC
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKV-YTTSYPLLVLLRTGLKKMGEIELAVRFVCPS 754 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~~ 754 (1006)
+ ..+||++.||+.+|..|.. .+.||++.+...+.... ..|+++++|.+-.
T Consensus 83 ---~--------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~ 133 (758)
T PLN02352 83 ---K--------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAE 133 (758)
T ss_pred ---C--------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhh
Confidence 2 4599999999999999865 89999999876554432 6999999999753
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=109.28 Aligned_cols=123 Identities=16% Similarity=0.197 Sum_probs=95.5
Q ss_pred ccEEEEEEEEecCCCC---CC---CCCCCCcEEEEEECC-----eEEEeeCcCCCCCCee-eeEEEEEeeCCCCCCCceE
Q 042999 15 VRKLVVEVVDARDLLP---KD---GQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVW-NEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~---~~---~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~w-ne~f~f~~~~~~~~~~~~L 82 (1006)
...|.|+|++|.+|+. .+ .....||||+|.+.+ .+++|++++++.||+| ||+|.|.+..++ -.-|
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE---LA~l 506 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE---LALL 506 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc---eeEE
Confidence 4579999999998731 11 123479999999943 4579999988899999 999999998865 3578
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
+|.|+|+|.. +.++|+|++.++++.| ..| .+.++|.+..+..-...+|.+++.+.+..
T Consensus 507 Rf~V~D~d~~-----~~d~figq~~lPv~~L-r~G---YR~VpL~~~~G~~l~~atLfv~~~~~~~~ 564 (567)
T PLN02228 507 WFKVQDYDND-----TQNDFAGQTCLPLPEL-KSG---VRAVRLHDRAGKAYKNTRLLVSFALDPPY 564 (567)
T ss_pred EEEEEeCCCC-----CCCCEEEEEEcchhHh-hCC---eeEEEccCCCCCCCCCeEEEEEEEEcCcc
Confidence 9999999987 6899999999999986 433 45688876654443457888888877653
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.5e-08 Score=85.11 Aligned_cols=84 Identities=27% Similarity=0.312 Sum_probs=70.5
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEECCe-EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 18 LVVEVVDARDLLPKD---GQGSSSPYVIADFDGQ-RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~---~~g~~dPyv~v~~~~~-~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
|.|+|..|+|+...+ ..+.+||||.+.+++. +.||++ +.||.|||+|.|.+.. ...+.+.|||....
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vdk-----~nEiel~VyDk~~~- 71 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVEK-----NNEEEVIVYDKGGD- 71 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEecC-----CcEEEEEEEeCCCC-
Confidence 679999999998877 4678899999999875 788888 4899999999999954 56899999998654
Q ss_pred CCCCCCCceeEEEEEeCeeeee
Q 042999 94 NGSGRKNHFLGRVKLCGSQFAR 115 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~ 115 (1006)
..-.+|..-+.+++|.+
T Consensus 72 -----~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 72 -----QPVPVGLLWLRLSDIAE 88 (109)
T ss_pred -----eecceeeehhhHHHHHH
Confidence 55688988888888743
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-08 Score=114.66 Aligned_cols=96 Identities=31% Similarity=0.482 Sum_probs=83.9
Q ss_pred CcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-------eEEEeeCcCCCCCCeeeeEEEEEeeCCCC-CCCceEEE
Q 042999 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-------QRKRTSTKFRDLNPVWNEPLEFIVSDPKN-MDCEELEI 84 (1006)
Q Consensus 13 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-------~~~kT~~~~~t~nP~wne~f~f~~~~~~~-~~~~~L~i 84 (1006)
++...|.|.|+.|+++.+-|.+|.+||||+|.+.. ..++|+|+.+|+||+|+|+|+|.+....- .....|.|
T Consensus 944 ~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~F 1023 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHF 1023 (1103)
T ss_pred ccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEE
Confidence 34567899999999999999999999999999974 23899999999999999999999987432 22567999
Q ss_pred EEEeCCCCCCCCCCCCceeEEEEEeCeee
Q 042999 85 EVYNDKRYCNGSGRKNHFLGRVKLCGSQF 113 (1006)
Q Consensus 85 ~V~d~d~~~~~~~~~d~~lG~~~v~l~~l 113 (1006)
+|+|+|.+ +.+||-|++.+.|+++
T Consensus 1024 TVMDHD~L-----~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1024 TVMDHDYL-----RSNDFAGEAFLELGDV 1047 (1103)
T ss_pred Eeecccee-----cccccchHHHHhhCCC
Confidence 99999999 8999999999999985
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-07 Score=103.89 Aligned_cols=122 Identities=25% Similarity=0.374 Sum_probs=91.8
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eE-EEeeCcCCCCCCeee-eEEEEEeeCCCCCCCceEEEEEE
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QR-KRTSTKFRDLNPVWN-EPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~-~kT~~~~~t~nP~wn-e~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
...|.|.|+.|+.|+. .+.|.+.|||.|.+.| .+ ++|.+..+++||+|| |+|+|.+..++ -.-|+|.||
T Consensus 1064 p~~lsv~vigaRHL~k-~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe---~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPK-LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE---FAFLRFVVY 1139 (1267)
T ss_pred ceEEEEEEeecccccc-CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc---eEEEEEEEe
Confidence 3678999999999984 3456778999999942 33 555566799999999 99999999986 568999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
|.|.+ +...|||++.+|+..+ +.| ..-++|.+.-...-....+.+.+...+..
T Consensus 1140 eeDmf-----s~~~FiaqA~yPv~~i-k~G---fRsVpLkN~ySEdlELaSLLv~i~m~~~~ 1192 (1267)
T KOG1264|consen 1140 EEDMF-----SDPNFLAQATYPVKAI-KSG---FRSVPLKNGYSEDLELASLLVFIEMRPVL 1192 (1267)
T ss_pred ccccc-----CCcceeeeeecchhhh-hcc---ceeeecccCchhhhhhhhheeeeEecccc
Confidence 99999 6677999999999985 443 34577876432222345566666665544
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.8e-07 Score=101.95 Aligned_cols=99 Identities=21% Similarity=0.324 Sum_probs=80.9
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEE-EeecccCCCCCeec-cEEEEEEeCCC-cEEEEEEE
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWV-RTRTITDCFDPRWN-EQYTWQVYDPC-TVLTVGVF 690 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~-rT~~~~~~~nP~wn-e~~~~~v~~~~-~~l~i~v~ 690 (1006)
-.|.|.|+.|+.|+. .|.|..-|||+|.+- ...+ +|.++.+++||+|| |.|+|.|.+|. .-|++.|+
T Consensus 1065 ~~lsv~vigaRHL~k-----~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPK-----LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVY 1139 (1267)
T ss_pred eEEEEEEeecccccc-----CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEe
Confidence 578999999999974 226667799999972 3344 44556678999999 99999999986 57999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|+|.++ ...|||++..|+..|..|- +..||+.
T Consensus 1140 eeDmfs-------~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1140 EEDMFS-------DPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred cccccC-------Ccceeeeeecchhhhhccc---eeeeccc
Confidence 999997 5569999999999998873 6678865
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-06 Score=77.55 Aligned_cols=110 Identities=22% Similarity=0.327 Sum_probs=80.7
Q ss_pred EEEEEeeccCCccCccC----C--C---CCCCCCeEEEEEE----CCEEEEeecccCCCCCeeccEEEEEEe--------
Q 042999 621 LELGILGARGLLPMKTK----N--G---GKGSTDAYCVAKY----GKKWVRTRTITDCFDPRWNEQYTWQVY-------- 679 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~----d--~---~~g~sdpyv~v~~----~~~~~rT~~~~~~~nP~wne~~~~~v~-------- 679 (1006)
|.|.|++|.||.++-.. | . ..-..++||.+.+ +.+..+|+++.++..|.|+..++|++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 46889999999764210 1 0 0124689999995 477899999999999999999999875
Q ss_pred C--------CCcEEEEEEEECCCCCcCC---CCCCCCceeEEEEEEcccccCCc-eEeeEEEe
Q 042999 680 D--------PCTVLTVGVFDNWRMFADA---SEERPDYRIGKIRIRVSTLENNK-VYTTSYPL 730 (1006)
Q Consensus 680 ~--------~~~~l~i~v~d~~~~~~~~---~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L 730 (1006)
. ....+.++||....-+... ..+.+|-+||.+.||+.+|...+ -.+.|||+
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 1 1348999999987643110 12457889999999999986543 35789985
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.8e-05 Score=93.78 Aligned_cols=120 Identities=16% Similarity=0.252 Sum_probs=88.8
Q ss_pred ccEEEEEEEEecCCCCC----C-CCCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 15 VRKLVVEVVDARDLLPK----D-GQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~----~-~~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
-|.|.++|.+|+-+... + .+...||||.|.+++.+ .|| .+..||+|+|+|.+++.... +..+.|.|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~---~~~~~f~vk~ 82 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPL---DSTITITLKT 82 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeec---CCcEEEEEec
Confidence 47899999999844322 1 11223999999998755 688 55669999999999998863 2579999988
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecCc
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDELS 150 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~ 150 (1006)
. ..+||.+.+++.+++.-....+.||++.....+......|++++.|.+...
T Consensus 83 ~----------~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 134 (758)
T PLN02352 83 K----------CSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL 134 (758)
T ss_pred C----------CeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence 1 378999999999975433337789998765433221259999999999875
|
|
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.1e-05 Score=84.63 Aligned_cols=179 Identities=17% Similarity=0.161 Sum_probs=118.1
Q ss_pred eeeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEEcCC-------CCCccEEEEEeCCcCCCCCCCCCCCc
Q 042999 323 HYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSP-------TENFLGGVCFDLSDVPVRDPPDSPLA 395 (1006)
Q Consensus 323 ~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~D~~-------~d~~lG~~~i~l~~l~~~~~~~~~~~ 395 (1006)
...+|.++ ...+||.|-+.|.....-.. ...|++.++|.+ ..+++|++...++++.........+
T Consensus 41 e~~rte~i-----~~~~~p~f~~~~~l~y~fE~--vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l- 112 (529)
T KOG1327|consen 41 EVGRTEVI-----RNVLNPFFTKKFLLQYRFEK--VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPL- 112 (529)
T ss_pred cccceeee-----eccCCccceeeechhheeee--eeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhh-
Confidence 34578888 99999999999987655544 578999999854 2799999999999887642111111
Q ss_pred ceeEEcccCCCCCCcceeeEEEEEEEeecCCCCcCccccCCCCCCccccccccccCCceEEEEEEEEEeecCcccCCCCC
Q 042999 396 PQWYRLEGEASDQNNRVSGDIQLAVWIGTQADEAFPEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVMEAQDLCIAHNLPP 475 (1006)
Q Consensus 396 ~~w~~L~~~~~~~~~~~~g~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~~~~L~V~v~~a~~L~~~~~~d~ 475 (1006)
.++... ..-.|.|.... ..++ ++ .......++|++|... |.
T Consensus 113 ----~~~~~~----~~~~g~iti~a----ee~~-------~~-----------------~~~~~~~~~~~~ld~k---d~ 153 (529)
T KOG1327|consen 113 ----LLKPGK----NAGSGTITISA----EEDE-------SD-----------------NDVVQFSFRAKNLDPK---DF 153 (529)
T ss_pred ----hcccCc----cCCcccEEEEe----eccc-------cc-----------------CceeeeeeeeeecCcc---cc
Confidence 222111 11224443322 0000 00 0122334558888877 78
Q ss_pred CCCCCcEEEEEE--CC----ccceeeeeecCCCCCCceecceeeeeecc----CCCCcEEEEEEECCCCccccceeEEEE
Q 042999 476 LTAPEIRVKAQL--AL----QSARTRRGSMNNHSSSFHWHEDVFFVAAE----PFEDSLILLVEDRTAKDAAAVILGHAV 545 (1006)
Q Consensus 476 ~~~~dpyv~v~l--g~----~~~kT~~~~~~~~t~nP~w~e~~~f~v~~----~~~~~L~v~V~D~~~~~~~d~~lG~~~ 545 (1006)
.+++|||..+.- ++ ..++|.+.+ ++++|.|... ...... .....+.+.+||.+..+ ++++||.+.
T Consensus 154 f~ksd~~l~~~~~~~d~s~~~~~~tEv~~---n~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~-~~~~ig~~~ 228 (529)
T KOG1327|consen 154 FSKSDPYLEFYKRVDDGSTQMLYRTEVVK---NTLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNG-KHDLIGKFQ 228 (529)
T ss_pred cccCCcceEEEEecCCCceeeccccceec---cCCCCccccc-ccchhhhcccCCCCceEEEEeccCCCC-CcCceeEec
Confidence 899999998764 22 567888765 9999999983 222221 22347899999999765 579999999
Q ss_pred Eecccccc
Q 042999 546 VPVSSIDQ 553 (1006)
Q Consensus 546 i~l~~l~~ 553 (1006)
.+++++..
T Consensus 229 tt~~~~~~ 236 (529)
T KOG1327|consen 229 TTLSELQE 236 (529)
T ss_pred ccHHHhcc
Confidence 99998864
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.9e-06 Score=96.81 Aligned_cols=108 Identities=21% Similarity=0.265 Sum_probs=88.0
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
+.|.|.|.-|++|.--..+..+||||+.++. ..++||+++++|.||.|||.+.+.....+.+..+.|.+.||..+
T Consensus 1524 ~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~ 1603 (1639)
T KOG0905|consen 1524 GTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNG 1603 (1639)
T ss_pred ceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeeccc
Confidence 5788999999999655556789999999995 24589999999999999999998854444444678999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
.+ ..+-|+|.+.++|.++ ........||+|...
T Consensus 1604 ~~-----~en~~lg~v~i~L~~~-~l~kE~~~Wy~lg~~ 1636 (1639)
T KOG0905|consen 1604 GL-----LENVFLGGVNIPLLKV-DLLKESVGWYNLGAC 1636 (1639)
T ss_pred ce-----eeeeeeeeeecchhhc-chhhhhcceeecccc
Confidence 88 6889999999999985 444444579999753
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.6e-05 Score=91.00 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=84.9
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEe---C-CCcEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVY---D-PCTVLTVG 688 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~---~-~~~~l~i~ 688 (1006)
.|+|.|.|.-|+||+-.. . +...||||+.++-. .+.||+++.+|.||.|||.....-. . ....|.+.
T Consensus 1523 ~~~LtImV~H~K~L~~Lq---d-g~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~s 1598 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQ---D-GQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVS 1598 (1639)
T ss_pred CceEEEEhhhhccccccc---C-CCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeee
Confidence 589999999999995542 1 55689999999832 2568999999999999998876532 2 23589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
||..+.+. .+.+||.+.|+|.++.-.+....||+|..
T Consensus 1599 Vls~~~~~-------en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1599 VLSNGGLL-------ENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred eeccccee-------eeeeeeeeecchhhcchhhhhcceeeccc
Confidence 99999887 78999999999999887776679999943
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.025 Score=62.15 Aligned_cols=239 Identities=13% Similarity=0.148 Sum_probs=153.9
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEECCccceeeeeecCCCCCCceecceeeeeec-------cCCCCcEEEEEE
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAA-------EPFEDSLILLVE 529 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~v~-------~~~~~~L~v~V~ 529 (1006)
+.|.|++|+|.+.. ..-...|..+++++...|-.+. .+.+|.||.++...+. ......|++++|
T Consensus 2 ivl~i~egr~F~~~------~~~~~vv~a~~ng~~l~TDpv~---~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~ 72 (340)
T PF12416_consen 2 IVLSILEGRNFPQR------PRHPIVVEAKFNGESLETDPVP---HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCF 72 (340)
T ss_pred EEEEEecccCCCCC------CCccEEEEEEeCCceeeecCCC---CCCCceeecceeeeccHHHHHHhhccCCceEEEEE
Confidence 57899999999832 3457789999999999999765 7889999998876542 122347899999
Q ss_pred ECCCCccccceeEEEEEecccc---ccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeCCccccccccc-----
Q 042999 530 DRTAKDAAAVILGHAVVPVSSI---DQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAH----- 601 (1006)
Q Consensus 530 D~~~~~~~d~~lG~~~i~l~~l---~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~~~~~~d~~~~----- 601 (1006)
-.+......+.||.+.+||... .. .+.....+||+|-+... +-.+.+-+|++.+++............
T Consensus 73 a~~~~~~~re~iGyv~LdLRsa~~~~~--~~~~~~~~W~~LL~~~~--~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~ 148 (340)
T PF12416_consen 73 AVDGSTGKRESIGYVVLDLRSAVVPQE--KNQKQKPKWYKLLSSSS--KYKKHKPELLLSLSIEDDSKPQTPDFESFKAK 148 (340)
T ss_pred EecCCCCcceeccEEEEEccccccccc--cccccCCCeeEcccccc--ccccCCccEEEEEEEeccccccCCcccccccc
Confidence 8873222589999999999988 32 22245788999987633 223345678888877653321000000
Q ss_pred cCCC-----------CCccc--ccc------C-------CCCcEEEEEEEeeccCCccCccCCC-C-CCCCCeEEEEEEC
Q 042999 602 VCSD-----------FRPTA--KQL------W-------KPPVGILELGILGARGLLPMKTKNG-G-KGSTDAYCVAKYG 653 (1006)
Q Consensus 602 ~~~~-----------~~p~~--~~l------~-------~~~~g~L~v~v~~a~~L~~~~~~d~-~-~g~sdpyv~v~~~ 653 (1006)
..++ ..+.. -.+ . ..+.-.|.|+|-.|.||..+..... + .+.+.-|...++-
T Consensus 149 ~~p~~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~Ysll 228 (340)
T PF12416_consen 149 PAPPRQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLL 228 (340)
T ss_pred CCCcccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEec
Confidence 0000 00000 000 0 1235578899999999866521111 0 1335666777775
Q ss_pred CEEEEeecccCCCCCeec-cEEE-EEEeC----------CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccC
Q 042999 654 KKWVRTRTITDCFDPRWN-EQYT-WQVYD----------PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLEN 720 (1006)
Q Consensus 654 ~~~~rT~~~~~~~nP~wn-e~~~-~~v~~----------~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~ 720 (1006)
+.-+.|.-.....+|.+- +.-. +.+.. ....|.|.++-. +..||.+.|++..+..
T Consensus 229 Gn~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~g------------~~~Lg~~~v~l~~Ll~ 295 (340)
T PF12416_consen 229 GNDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCCG------------NQSLGSTSVPLQPLLP 295 (340)
T ss_pred CcEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEeeC------------CcEEEEEEEEhhhccC
Confidence 567888888888888775 3333 66643 234688888764 4589999999998853
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.6e-05 Score=68.94 Aligned_cols=109 Identities=21% Similarity=0.331 Sum_probs=80.2
Q ss_pred EEEEEEEecCCCCCCC-------------CCCCCcEEEEEE----CCeEEEeeCcCCCCCCeeeeEEEEEeeC-------
Q 042999 18 LVVEVVDARDLLPKDG-------------QGSSSPYVIADF----DGQRKRTSTKFRDLNPVWNEPLEFIVSD------- 73 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~-------------~g~~dPyv~v~~----~~~~~kT~~~~~t~nP~wne~f~f~~~~------- 73 (1006)
|.|.|++|.+|..... .-..|+||.+.+ ++..++|+++-++..|.|+-.++|.+.-
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4688889888865311 112589999996 3577999999999999999999998761
Q ss_pred -----CCCCCCceEEEEEEeCCCCCCC-----CCCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 74 -----PKNMDCEELEIEVYNDKRYCNG-----SGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 74 -----~~~~~~~~L~i~V~d~d~~~~~-----~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
.+.+....+.|+||+.+..+-+ ...+|-.||.+.+|+.+++........||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 0123467899999998754211 1246678999999999987766666679875
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00024 Score=84.04 Aligned_cols=100 Identities=22% Similarity=0.312 Sum_probs=78.5
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEE-EECCEEEEeecccCCCCCeeccEEEEEEeCCC-cEEEEEEEECCC
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVA-KYGKKWVRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVGVFDNWR 694 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v-~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~v~d~~~ 694 (1006)
-.|...+++++|+ |+ . .|+|+++ .+|.+.+||.+.++|+||+||+...|.|.... ...+|.|||++.
T Consensus 52 ~~~~~~~~~~~~~----~~-----~--~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (644)
T PLN02964 52 FSGIALLTLVGAE----MK-----F--KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNR 120 (644)
T ss_pred ccCeEEEEeehhh----hc-----c--CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCC
Confidence 4689999999997 32 2 5888655 57999999999999999999999999997633 346999999999
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCce--EeeEEEeeeec
Q 042999 695 MFADASEERPDYRIGKIRIRVSTLENNKV--YTTSYPLLVLL 734 (1006)
Q Consensus 695 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~--~~~~~~L~~~~ 734 (1006)
+. +++++|.++++|.++...+. ....|.+.+.+
T Consensus 121 ~s-------~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~d 155 (644)
T PLN02964 121 LS-------KNTLVGYCELDLFDFVTQEPESACESFDLLDPS 155 (644)
T ss_pred CC-------HHHhhhheeecHhhccHHHHHHHHHHHHHHCCC
Confidence 87 89999999999988765432 12335555543
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0012 Score=55.59 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=63.2
Q ss_pred EEEEEEeecCcccCCCCCCCCCCcEEEEEE--CC-ccceeeeeecCCCCCCceecceeeeeeccCC--CCcEEEEEEECC
Q 042999 458 RVTVMEAQDLCIAHNLPPLTAPEIRVKAQL--AL-QSARTRRGSMNNHSSSFHWHEDVFFVAAEPF--EDSLILLVEDRT 532 (1006)
Q Consensus 458 ~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l--g~-~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~--~~~L~v~V~D~~ 532 (1006)
.|+|+.|+||--.. .-+..+..|++--+ .. -..||... ..+.||+|.|+|.|.+.... .-.|.|.|+...
T Consensus 2 witv~~c~d~s~~~--~~~e~~~i~ikg~~tl~kpv~~KsS~r---rgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~ 76 (103)
T cd08684 2 WITVLKCKDLSWPS--SCGENPTIYIKGILTLPKPVHFKSSAK---EGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQT 76 (103)
T ss_pred EEEEEEeccccccc--ccCcCCeeEEEEEEecCCCccccchhh---cCCCChhHHHHHHHHHHHhhccceEEEEEeeccC
Confidence 58899999997542 33445677887555 22 33455543 48899999999999876444 336888888843
Q ss_pred CCccccceeEEEEEecccccc
Q 042999 533 AKDAAAVILGHAVVPVSSIDQ 553 (1006)
Q Consensus 533 ~~~~~d~~lG~~~i~l~~l~~ 553 (1006)
.+ .+.||.|.+.|.++..
T Consensus 77 -~R--Ke~iG~~sL~l~s~ge 94 (103)
T cd08684 77 -PR--KRTIGECSLSLRTLST 94 (103)
T ss_pred -Cc--cceeeEEEeecccCCH
Confidence 33 7899999999998875
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0011 Score=78.45 Aligned_cols=88 Identities=22% Similarity=0.300 Sum_probs=72.4
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEE-EEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVI-ADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRY 92 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~-v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~ 92 (1006)
-.|...+++++|+ ++ ..|+|.. +.+|.+.+||.+.++|+||+||+...|.+...+ ....+|.|||.+++
T Consensus 52 ~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 121 (644)
T PLN02964 52 FSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNG---PHLARISVFETNRL 121 (644)
T ss_pred ccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCC---cceEEEEEEecCCC
Confidence 3478889999987 33 3578655 566888999999999999999999999987754 34569999999999
Q ss_pred CCCCCCCCceeEEEEEeCeeeeee
Q 042999 93 CNGSGRKNHFLGRVKLCGSQFARR 116 (1006)
Q Consensus 93 ~~~~~~~d~~lG~~~v~l~~l~~~ 116 (1006)
+.++++|.+++++.++...
T Consensus 122 -----s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 122 -----SKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred -----CHHHhhhheeecHhhccHH
Confidence 8999999999999886443
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0011 Score=71.41 Aligned_cols=118 Identities=23% Similarity=0.275 Sum_probs=91.3
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeC-CC-----------
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYD-PC----------- 682 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~-~~----------- 682 (1006)
.|++.|+++.+++... + .-..|-|+.+.+. .+..+|.++++|.+|.|+|.|.+.+.. +.
T Consensus 368 elel~ivrg~~~pvp~---g-p~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr 443 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPG---G-PMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR 443 (523)
T ss_pred HhHHHHhhcccCCCCC---C-chhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence 5677888988886531 1 2235789888872 345688899999999999999999875 21
Q ss_pred cEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcc-cccEEEEEEEEe
Q 042999 683 TVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLK-KMGEIELAVRFV 751 (1006)
Q Consensus 683 ~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~-~~G~l~l~~~~~ 751 (1006)
--+.|++|.+..+. .+|.++|.+.|.|..|++.-.....|+|.+ |++ -.|.|++.++..
T Consensus 444 ~g~kfeifhkggf~------rSdkl~gt~nikle~Len~cei~e~~~l~D----GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 444 LGKKFEIFHKGGFN------RSDKLTGTGNIKLEILENMCEICEYLPLKD----GRKAVGGKLEVKVRIR 503 (523)
T ss_pred cCeeEEEeeccccc------cccceeceeeeeehhhhcccchhhceeccc----cccccCCeeEEEEEEe
Confidence 15899999998776 479999999999999988766678899976 333 249999998876
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00075 Score=72.14 Aligned_cols=108 Identities=23% Similarity=0.276 Sum_probs=85.7
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-CCE----EEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEE
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-GKK----WVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVF 690 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-~~~----~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~ 690 (1006)
...|.|+|.|++|++|.+.- +....++|||.|++ ++. ..+|+...+|++|.+.++..|.-..+...|.++||
T Consensus 266 d~~g~l~vEii~ar~l~~k~---~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~ 342 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKP---GSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVW 342 (405)
T ss_pred cccCceeEEEEecccccccC---CcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEe
Confidence 35799999999999998732 21336899999997 332 33788888999998888888887778889999998
Q ss_pred E-CCCCCcCCCCCCCCceeEEEEEEcccccCCc-eEeeEEEeeee
Q 042999 691 D-NWRMFADASEERPDYRIGKIRIRVSTLENNK-VYTTSYPLLVL 733 (1006)
Q Consensus 691 d-~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 733 (1006)
- +.++- .+.|+|-+.|-+.+|.... ....||+|...
T Consensus 343 gdygRmd-------~k~fmg~aqi~l~eL~ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 343 GDYGRMD-------HKSFMGVAQIMLDELNLSSSPVIGWYKLFGS 380 (405)
T ss_pred ccccccc-------hHHHhhHHHHHhhhhccccccceeeeeccCC
Confidence 5 34433 7889999999999998765 67899999764
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0013 Score=55.30 Aligned_cols=97 Identities=12% Similarity=0.153 Sum_probs=67.7
Q ss_pred EEEEEEecCCCCCCC-CCCCCcEEEEEE--C-CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 19 VVEVVDARDLLPKDG-QGSSSPYVIADF--D-GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 19 ~V~v~~a~~L~~~~~-~g~~dPyv~v~~--~-~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
-++++.++||.-... +....-|++=.+ . ...+||+..+...||+|.|+|.|.+.-.. +.+-.|-|.|++ ..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~q-L~~V~L~fsv~~--~~-- 76 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQN-LQTVRLVFKIQT--QT-- 76 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhh-ccceEEEEEeec--cC--
Confidence 378899999853322 222334555333 2 35589999999999999999999987643 336688999998 34
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCceeEEEE
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDEGLVYFP 125 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~ 125 (1006)
.+...||.|.+.++++ . .+...+|..
T Consensus 77 ---~RKe~iG~~sL~l~s~-g-eeE~~HW~e 102 (103)
T cd08684 77 ---PRKRTIGECSLSLRTL-S-TQETDHWLE 102 (103)
T ss_pred ---CccceeeEEEeecccC-C-HHHhhhhhc
Confidence 4789999999999984 2 223345643
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.018 Score=63.30 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=93.5
Q ss_pred EEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeC--------CCcEEEEEEEEC
Q 042999 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD--------PCTVLTVGVFDN 692 (1006)
Q Consensus 621 L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~--------~~~~l~i~v~d~ 692 (1006)
+.|.|++|+|.+.. .+-.-.+..+++++...|.-+..+-.|.||.++.|.+.. ...+|++++|--
T Consensus 2 ivl~i~egr~F~~~-------~~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQR-------PRHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCC-------CCccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence 57899999999752 235677888999999999999999999999999999842 356899999998
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccc---cCC--ceEeeEEEeeeeccCCcccccEEEEEEEEecCC
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTL---ENN--KVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPS 754 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l---~~~--~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~~ 754 (1006)
|... ...+.||.+.++|... ..+ ....+||+|...+.+-.+..=+|.+.+......
T Consensus 75 ~~~~------~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 75 DGST------GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS 135 (340)
T ss_pred cCCC------CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence 8332 2678999999999998 555 455799999886332222236788877776554
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0014 Score=70.48 Aligned_cols=129 Identities=13% Similarity=0.214 Sum_probs=95.0
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCC--------CCc
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNM--------DCE 80 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~--------~~~ 80 (1006)
....|.+.|+++.+++...+.-..|-|+++.+- .++.+|.+++.|.+|.|+|.|.+.+...... ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 345677888888888655433345789998883 3567899999999999999999998762211 134
Q ss_pred eEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 81 ELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 81 ~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
.+.|++|+..-+. .+|.++|.+.+.+..+ ...-.....++|.+.. ..+.|.+.+++..-...
T Consensus 445 g~kfeifhkggf~----rSdkl~gt~nikle~L-en~cei~e~~~l~DGR--K~vGGkLevKvRiR~Pi 506 (523)
T KOG3837|consen 445 GKKFEIFHKGGFN----RSDKLTGTGNIKLEIL-ENMCEICEYLPLKDGR--KAVGGKLEVKVRIRQPI 506 (523)
T ss_pred CeeEEEeeccccc----cccceeceeeeeehhh-hcccchhhceeccccc--cccCCeeEEEEEEeccc
Confidence 6899999988774 6899999999998874 4444444678887654 24578998888876554
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0024 Score=68.34 Aligned_cols=108 Identities=24% Similarity=0.380 Sum_probs=84.7
Q ss_pred cccEEEEEEEEecCCCCCCCC-CCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQ-GSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|.|++|++|..+... ..++|||+|++.. .+.+|+...+|+.|.+-+...|.-..+ ...|.+.||
T Consensus 267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~----~k~Lq~tv~ 342 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP----GKYLQGTVW 342 (405)
T ss_pred ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC----ccEEEEEEe
Confidence 457899999999999887643 3689999999942 357899999999999998888887665 568999999
Q ss_pred e-CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 88 N-DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 88 d-~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
. +.+. ..+.|+|.+.+-++++--.......||+|...+
T Consensus 343 gdygRm-----d~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 343 GDYGRM-----DHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred cccccc-----chHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 5 4556 577899999999998632233556799998654
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.068 Score=51.46 Aligned_cols=131 Identities=18% Similarity=0.162 Sum_probs=92.3
Q ss_pred cccEEEEEEEEecCCCCCCC--CCCCCc--EEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCC----------CCC
Q 042999 14 TVRKLVVEVVDARDLLPKDG--QGSSSP--YVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN----------MDC 79 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~--~g~~dP--yv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~----------~~~ 79 (1006)
...-|+++|..++-...--. .+..+. ++-+.+++|+++|+.+..+.+|.|+|.|.|.+..... ...
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~ 86 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS 86 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence 45678999999886543211 133333 4455567999999999999999999999999876420 124
Q ss_pred ceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCce-eEEEEceecCCce-eeeEEEEEEEEEEecC
Q 042999 80 EELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEG-LVYFPLEKKSVFS-WIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 80 ~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~-~~w~~L~~~~~~~-~~~G~i~l~~~~~~~~ 149 (1006)
+.|++.|---|.. +...++|...++...++..+... ..-+.|...+..+ -..|-+.++++..+..
T Consensus 87 ~pihivli~~d~~-----~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~ 153 (156)
T PF15627_consen 87 DPIHIVLIRTDPS-----GETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL 153 (156)
T ss_pred CceEEEEEEecCC-----CceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence 6788888877776 56689999999999987666432 2234454443332 2579999999988765
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.047 Score=64.58 Aligned_cols=95 Identities=22% Similarity=0.243 Sum_probs=73.1
Q ss_pred EEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC-------ccceeeeeecCCCCCCceecce-eeee-eccCCCCcEEE
Q 042999 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL-------QSARTRRGSMNNHSSSFHWHED-VFFV-AAEPFEDSLIL 526 (1006)
Q Consensus 456 ~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~-------~~~kT~~~~~~~~t~nP~w~e~-~~f~-v~~~~~~~L~v 526 (1006)
.+.|+||+|+=|-.+ +...||.|.+-| ..+||+++. .++.||+|+|+ |.|. |.-|....|+|
T Consensus 704 t~sV~VISgqFLSdr-------kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~--~n~~npvy~eepfvF~KVvLpeLA~lRi 774 (1189)
T KOG1265|consen 704 TLSVTVISGQFLSDR-------KVGTYVEVDMFGLPTDTIRKEFRTRTVQ--GNSFNPVYEEEPFVFRKVVLPELASLRI 774 (1189)
T ss_pred eEEEEEEeeeecccc-------ccCceEEEEecCCCchhhhhhhhhcccc--CCCCCcccccCCcccceecccchhheee
Confidence 499999999988643 455899999832 456777754 68899999995 7775 55566778999
Q ss_pred EEEECCCCccccceeEEEEEeccccccccccCcccceEEeCcCCC
Q 042999 527 LVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSC 571 (1006)
Q Consensus 527 ~V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~ 571 (1006)
.||+.. ..+||+-.+++..|.. +.+.+.|....
T Consensus 775 avyeEg-----gK~ig~RIlpvd~l~~-------GYrhv~LRse~ 807 (1189)
T KOG1265|consen 775 AVYEEG-----GKFIGQRILPVDGLNA-------GYRHVCLRSES 807 (1189)
T ss_pred eeeccC-----CceeeeeccchhcccC-------cceeEEecCCC
Confidence 999986 5699999999998864 34567777654
|
|
| >PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.047 Score=52.56 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=43.2
Q ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhhccccccCcchhhHHHHHHHHHhhc
Q 042999 822 MRKSKANWFRIVAVLAWAIGLAKWLHNIRRWKNPVTTVLVHVLYLVLVWY 871 (1006)
Q Consensus 822 ~~~~~~n~~rl~~~l~~~~~~~~~~~~~~~W~~p~~t~~~~~~~~~~~~~ 871 (1006)
..+++.=..|++..+..+-..+..++.+++|+.|..|.++.++.++++.-
T Consensus 61 ydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avv 110 (156)
T PF08372_consen 61 YDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVV 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHH
Confidence 34677777889999999999999999999999999999998887777655
|
It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO). |
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.073 Score=63.01 Aligned_cols=108 Identities=27% Similarity=0.366 Sum_probs=78.6
Q ss_pred CCCCCCCCCCcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-------eEEEeeCcC-CCCCCeeee-EEEEEeeCC
Q 042999 4 PSQPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-------QRKRTSTKF-RDLNPVWNE-PLEFIVSDP 74 (1006)
Q Consensus 4 p~~~~~~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-------~~~kT~~~~-~t~nP~wne-~f~f~~~~~ 74 (1006)
|+...+-+.-..+.+.|+|+++.=|..++ ..-||.|.+-+ ..++|+++. ++.||+|+| .|.|.---.
T Consensus 691 PFse~~VdgvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvL 766 (1189)
T KOG1265|consen 691 PFSESPVDGVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVL 766 (1189)
T ss_pred CcccCcccceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecc
Confidence 67777777777889999999999997665 34799998832 347888875 788999994 677762221
Q ss_pred CCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 75 KNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 75 ~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
.+ -..|+|.||+. +.+|||+-.++++.+ ..| .+.+.|...+
T Consensus 767 pe--LA~lRiavyeE---------ggK~ig~RIlpvd~l-~~G---Yrhv~LRse~ 807 (1189)
T KOG1265|consen 767 PE--LASLRIAVYEE---------GGKFIGQRILPVDGL-NAG---YRHVCLRSES 807 (1189)
T ss_pred cc--hhheeeeeecc---------CCceeeeeccchhcc-cCc---ceeEEecCCC
Confidence 11 35799999985 346999999999885 333 3456666544
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.2 Score=49.07 Aligned_cols=92 Identities=18% Similarity=0.173 Sum_probs=62.1
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCeE----EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR----KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~~~----~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
..++|+|+++.++.-. ..+|-||.+.+ +++. ..|+.+.. .++.|||.+.|++.-.....+..|.|.||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 4688999999998653 34688888866 4433 34554443 6899999999987664444477899999997
Q ss_pred CCCCCCCCCCCceeEEEEEeCee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQ 112 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~ 112 (1006)
.... +.+.....+|.+.++|=+
T Consensus 84 ~~~~-~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRK-GAKEEHCPLAWGNINLFD 105 (158)
T ss_pred eccc-CCCCceEEEEEEEEEEEC
Confidence 5420 000122468888877655
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.15 Score=49.87 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=58.7
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEE--CCccc----eeeeeecCCCCCCceecceeeeeec---cCCCCcEEEE
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL--ALQSA----RTRRGSMNNHSSSFHWHEDVFFVAA---EPFEDSLILL 527 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~~~t~nP~w~e~~~f~v~---~~~~~~L~v~ 527 (1006)
++|.|+.+.++... ..+|.||++.+ |++.. .|+.+ ...++.|||-+.|.+. -|.+..|.|.
T Consensus 10 ~~v~i~~~~~~~~~------~~~~l~V~v~l~~g~~~L~~pv~T~~v----~~~~~~WnEwL~fpI~i~dLPr~ArL~it 79 (158)
T cd08398 10 LRIKILCATYVNVN------DIDKIYVRTGIYHGGEPLCDNVNTQRV----PCSNPRWNEWLDYDIYIPDLPRSARLCLS 79 (158)
T ss_pred eEEEEEeeccCCCC------CcCeEEEEEEEEECCEEccCeeEeccc----CCCCCccceeEEcccchhcCChhheEEEE
Confidence 89999999998753 34688988866 65443 23322 2368999999888763 3345689999
Q ss_pred EEECCCCc---cccceeEEEEEeccc
Q 042999 528 VEDRTAKD---AAAVILGHAVVPVSS 550 (1006)
Q Consensus 528 V~D~~~~~---~~d~~lG~~~i~l~~ 550 (1006)
||+..... .....+|.+.++|=+
T Consensus 80 i~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 80 ICSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEEecccCCCCceEEEEEEEEEEEC
Confidence 99976321 023579999988765
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.29 Score=47.24 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=83.3
Q ss_pred CCceEEEEEEEEEeecCcccCCCC-CCCCCC--cEEEEEECCccceeeeeecCCCCCCceecceeeeeeccCC-------
Q 042999 451 SPKLWYLRVTVMEAQDLCIAHNLP-PLTAPE--IRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPF------- 520 (1006)
Q Consensus 451 ~p~~~~L~V~v~~a~~L~~~~~~d-~~~~~d--pyv~v~lg~~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~------- 520 (1006)
.|.-.+|.+.|..|+-..-. ++ ..+..+ .++-+.+++|.++|+.+. .+.+|.|+|.|.|.+....
T Consensus 5 ~~~~~yL~l~vlgGkAFld~--l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp---~~~eP~f~e~Flf~l~~~~~~~~~~~ 79 (156)
T PF15627_consen 5 DPGRRYLHLRVLGGKAFLDH--LQEPEGQVCSTFTLHLHFRGQRFRSKPVP---CACEPDFNEEFLFELPRDSFGAGSTA 79 (156)
T ss_pred CCCceEEEEEEeCchhHhhh--hhccCCCCceEEEEEEEecCceEecCCcc---cccCCCCCCcEEEEecccccccccch
Confidence 44556799999999766522 11 112333 345556689999999876 8999999999999876553
Q ss_pred ------CCcEEEEEEECCCCccccceeEEEEEeccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeC
Q 042999 521 ------EDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEG 591 (1006)
Q Consensus 521 ------~~~L~v~V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~ 591 (1006)
.+.+.+.|.-.|... ...++|...++...+....... + ..-+.|.+... ...-..|-|.+++.+.+
T Consensus 80 ~~lls~~~pihivli~~d~~~-~~~Lv~s~~ldWR~vL~s~~~~-~-~~~vEL~G~~~--e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 80 TTLLSISDPIHIVLIRTDPSG-ETTLVGSHFLDWRKVLCSGNGS-T-SFTVELCGVGP--ESKVPVGILDLRLELLP 151 (156)
T ss_pred hHhhcCCCceEEEEEEecCCC-ceEeeeeceehHHHHhccCCCc-c-ceeEEEeccCC--CCccceeEEEEEEEeec
Confidence 236777777665432 3589999999998887643211 0 11233443322 11234688888876654
|
|
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.064 Score=56.02 Aligned_cols=119 Identities=19% Similarity=0.234 Sum_probs=78.2
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCC
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWR 694 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~ 694 (1006)
...|.|.++++.++||.-... .- +-..+-|||+.++. ...||.+-.....-.|.|.|.+++... .++.+-||.|+.
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~-~k-glt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-~vl~~lvySW~p 124 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQ-QK-GLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-EVLHYLVYSWPP 124 (442)
T ss_pred cccceEEEEEecccccccChh-cc-CceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-eeeeEEEeecCc
Confidence 357999999999999954321 12 34678999999974 456777766666778999999988654 468888999875
Q ss_pred CCcCCCCCCCCc--eeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 695 MFADASEERPDY--RIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 695 ~~~~~~~~~~d~--~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
-. .+. .+| .|.+..+.+..+ .+.+.|.- ...|++.+++.|...
T Consensus 125 q~-------RHKLC~~g--~l~~~~v~rqsp-d~~~Al~l------ePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 125 QR-------RHKLCHLG--LLEAFVVDRQSP-DRVVALYL------EPRGQPPLRLPLADP 169 (442)
T ss_pred hh-------hccccccc--hhhhhhhhhcCC-cceeeeec------ccCCCCceecccCCh
Confidence 32 232 244 233333332221 33444432 245999999999843
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.29 Score=48.84 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=53.1
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCeE----EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR----KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~~~----~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
..++|+|+.+.+|.-+ ....+-||.+.+ |++. ..|+.+.-..++.|||.+.|++.-........|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4688999999999752 234666777655 4433 4666665567799999999987664434477899999997
Q ss_pred CC
Q 042999 90 KR 91 (1006)
Q Consensus 90 d~ 91 (1006)
..
T Consensus 86 ~~ 87 (173)
T cd08693 86 SK 87 (173)
T ss_pred cc
Confidence 54
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.073 Score=55.60 Aligned_cols=119 Identities=19% Similarity=0.135 Sum_probs=78.3
Q ss_pred cccEEEEEEEEecCCCCCC--CCCCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 14 TVRKLVVEVVDARDLLPKD--GQGSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~--~~g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..|.|.+++.++++|.-.. .+-+.+-||++.++. ++.+|.+......-.|.|+|..++... ..+.+-||.|+
T Consensus 49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~~-----~vl~~lvySW~ 123 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVNI-----EVLHYLVYSWP 123 (442)
T ss_pred ccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecccc-----eeeeEEEeecC
Confidence 4678999999999996533 245678999999985 457777776777778999999988763 47889999887
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
.- .++++.-..-+.+..+...... .-+.|.- ..+|++-+++.+.+..
T Consensus 124 pq-----~RHKLC~~g~l~~~~v~rqspd--~~~Al~l-----ePrgq~~~r~~~~Dp~ 170 (442)
T KOG1452|consen 124 PQ-----RRHKLCHLGLLEAFVVDRQSPD--RVVALYL-----EPRGQPPLRLPLADPE 170 (442)
T ss_pred ch-----hhccccccchhhhhhhhhcCCc--ceeeeec-----ccCCCCceecccCChH
Confidence 65 3444322223333333222222 2233332 1278888888776653
|
|
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.36 Score=47.41 Aligned_cols=73 Identities=22% Similarity=0.199 Sum_probs=54.7
Q ss_pred CCCCcEEEEEE--CCeE----EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEE
Q 042999 35 GSSSPYVIADF--DGQR----KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108 (1006)
Q Consensus 35 g~~dPyv~v~~--~~~~----~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v 108 (1006)
..+|-||.+.+ +++. ..|+.+.-+..+.|||...|++.-.....+..|.|.|||.+.. +....+|.+.+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~-----~~~~~vg~~~~ 102 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT-----GKAVPFGGTTL 102 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC-----CCceEEEEEEE
Confidence 45788888876 4433 4666666667789999999998775444577899999998765 45678999888
Q ss_pred eCee
Q 042999 109 CGSQ 112 (1006)
Q Consensus 109 ~l~~ 112 (1006)
+|=+
T Consensus 103 ~lFd 106 (159)
T cd08397 103 SLFN 106 (159)
T ss_pred eeEC
Confidence 8665
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.42 Score=47.75 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=57.8
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEE--CCccc----eeeeeecCCCCCCceecceeeeeec---cCCCCcEEEE
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL--ALQSA----RTRRGSMNNHSSSFHWHEDVFFVAA---EPFEDSLILL 527 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~~~~t~nP~w~e~~~f~v~---~~~~~~L~v~ 527 (1006)
++|+|+.+.+|... ....+.||++.+ |++.. .|+... -..++.|||.+.|.+. -|.+..|.|.
T Consensus 10 f~i~i~~~~~~~~~-----~~~~~l~V~~~lyhG~~~L~~p~~T~~~~---~~~~~~Wnewl~F~I~i~dLPr~ArLcit 81 (173)
T cd08693 10 FSITLHKISNLNAA-----ERTMKVGVQAGLFHGGESLCKTVKTSEVS---GKNDPVWNETLEFDINVCDLPRMARLCFA 81 (173)
T ss_pred EEEEEEEeccCccC-----CCCceEEEEEEEEECCEEccCceEccccC---CCCccccceeEEcccchhcCChhHeEEEE
Confidence 89999999999852 235678888755 66443 343322 3467999999888753 3445689999
Q ss_pred EEECCCCc---------------cccceeEEEEEeccc
Q 042999 528 VEDRTAKD---------------AAAVILGHAVVPVSS 550 (1006)
Q Consensus 528 V~D~~~~~---------------~~d~~lG~~~i~l~~ 550 (1006)
||+..... ..+..||.+.++|=+
T Consensus 82 i~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 82 IYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EEEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 99865311 013578877777654
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.9 Score=41.52 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=77.2
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEE---EEeecc-cCCCCCeeccEEEEEEeC---C------CcEEE
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW---VRTRTI-TDCFDPRWNEQYTWQVYD---P------CTVLT 686 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~---~rT~~~-~~~~nP~wne~~~~~v~~---~------~~~l~ 686 (1006)
.+.+.|++..++|.. ..--||....|+.. ..|... ..+..-.||+.|.+.+.- . ...+.
T Consensus 8 ~~~l~i~~l~~~p~~--------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~ 79 (143)
T PF10358_consen 8 QFDLTIHELENLPSS--------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELK 79 (143)
T ss_pred EEEEEEEEeECcCCC--------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEE
Confidence 567888888888651 23456666666553 444433 346678999999888742 1 12688
Q ss_pred EEEEECCCCCcCCCCCCCCceeEEEEEEcccccCC--ceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 687 VGVFDNWRMFADASEERPDYRIGKIRIRVSTLENN--KVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 687 i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
|.|+....-+ +...||++.|.|.++.+. ......++|... ......|++.+.+..
T Consensus 80 ~~v~~~~~~~-------~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~----~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 80 FSVFEVDGSG-------KKKVLGKVSINLAEYANEDEEPITVRLLLKKC----KKSNATLSISISLSE 136 (143)
T ss_pred EEEEEecCCC-------ccceEEEEEEEHHHhhCcCCCcEEEEEeCccC----CCCCcEEEEEEEEEE
Confidence 9999875322 236999999999999873 556778888653 123478888888764
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.67 Score=45.58 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=61.3
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCeE----EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR----KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~~~----~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
..++|++....++...+ ....+-||.+.+ +++. ..|.......++.|||.+.|++.-........|.|.||+.
T Consensus 8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 45778888888775411 234566777755 4432 3444444447899999999987654333467899999997
Q ss_pred CCCCCCCCC--CCceeEEEEEeCee
Q 042999 90 KRYCNGSGR--KNHFLGRVKLCGSQ 112 (1006)
Q Consensus 90 d~~~~~~~~--~d~~lG~~~v~l~~ 112 (1006)
+.. + .+..||.+.++|=+
T Consensus 87 ~~~-----~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 87 SEP-----GSKKEVPLGWVNVPLFD 106 (156)
T ss_pred ecC-----CCCcceEEEEEeEEeEc
Confidence 755 2 45789998888665
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.11 Score=62.59 Aligned_cols=105 Identities=15% Similarity=0.106 Sum_probs=84.2
Q ss_pred CCCCeEEEEEECCEE-EEeecccCC-CCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccccc
Q 042999 642 GSTDAYCVAKYGKKW-VRTRTITDC-FDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLE 719 (1006)
Q Consensus 642 g~sdpyv~v~~~~~~-~rT~~~~~~-~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 719 (1006)
..+++|+.+.+.... .+|..+.+. .+|.|.+.|.....+....+++.+-+.+..| ....+|.+.++...+.
T Consensus 136 ~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G-------~s~~w~~v~~s~~~~~ 208 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPG-------WSKRWGRVKISFLQYC 208 (887)
T ss_pred hhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccc-------ceeEEEEeccchhhhh
Confidence 347999999997654 488888887 5999999999999999999999999988765 5779999999999999
Q ss_pred CCceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 720 NNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 720 ~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
.+.....|+++.+.+.+..++.-.+.+.+.|.+.
T Consensus 209 ~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~ 242 (887)
T KOG1329|consen 209 SGHRIGGWFPILDNDGKPHQKGSNESLRLGFTPM 242 (887)
T ss_pred ccccccceeeeeccCCccccCCcccceEEeeEee
Confidence 9887889999988665443343445566666654
|
|
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.73 Score=45.27 Aligned_cols=70 Identities=14% Similarity=0.119 Sum_probs=51.5
Q ss_pred CCCCCeEEEEEE--CCEEE----EeecccCCCCCeeccEEEEEEeC----CCcEEEEEEEECCCCCcCCCCCCCCceeEE
Q 042999 641 KGSTDAYCVAKY--GKKWV----RTRTITDCFDPRWNEQYTWQVYD----PCTVLTVGVFDNWRMFADASEERPDYRIGK 710 (1006)
Q Consensus 641 ~g~sdpyv~v~~--~~~~~----rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~ 710 (1006)
...+|-||.+.+ |++.+ +|+.+.-+..+.|||-..|++.- ..+.|.|+|||.+..+ +...||.
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~-------~~~~vg~ 99 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG-------KAVPFGG 99 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCC-------CceEEEE
Confidence 345788887764 66543 66666656778999999998752 3568999999986533 5678999
Q ss_pred EEEEccc
Q 042999 711 IRIRVST 717 (1006)
Q Consensus 711 ~~i~l~~ 717 (1006)
+.++|=+
T Consensus 100 ~~~~lFd 106 (159)
T cd08397 100 TTLSLFN 106 (159)
T ss_pred EEEeeEC
Confidence 9998754
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=91.58 E-value=3.5 Score=39.75 Aligned_cols=124 Identities=16% Similarity=0.204 Sum_probs=80.9
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeE---EEeeCcC-CCCCCeeeeEEEEEeeCCC-----CCCCceEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQR---KRTSTKF-RDLNPVWNEPLEFIVSDPK-----NMDCEELEI 84 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~---~kT~~~~-~t~nP~wne~f~f~~~~~~-----~~~~~~L~i 84 (1006)
....+.|+|.+..+++. ....-||+...+... .+|.... .+..-.|||.|.+.++-.. ......+.|
T Consensus 5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 45678899999999875 223445555555432 4444443 4455789999998865422 123567889
Q ss_pred EEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeC-CceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 85 EVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRG-DEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 85 ~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~-~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
.|+..... ++...+|.+.++|.+++... .....-++|.... .....|.+++.+....
T Consensus 81 ~v~~~~~~-----~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~---~~~a~L~isi~~~~~~ 138 (143)
T PF10358_consen 81 SVFEVDGS-----GKKKVLGKVSINLAEYANEDEEPITVRLLLKKCK---KSNATLSISISLSELR 138 (143)
T ss_pred EEEEecCC-----CccceEEEEEEEHHHhhCcCCCcEEEEEeCccCC---CCCcEEEEEEEEEECc
Confidence 99987533 23369999999999986653 4444567776542 2356777887777665
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER) | Back alignment and domain information |
|---|
Probab=91.44 E-value=0.028 Score=56.23 Aligned_cols=50 Identities=10% Similarity=-0.077 Sum_probs=18.3
Q ss_pred HHHHHhhHHhHhhhccccCchhHHHHHHHHHHHHHHhhhhhhHHHHHHHh
Q 042999 950 LGDFATQGERVQALVSWRDPRATKLFIGVCTVITLVLYVVPPKMVAVALG 999 (1006)
Q Consensus 950 l~~~a~~~e~i~~~~~w~~p~~t~~~~~~l~~~~~~l~~iP~r~i~l~~~ 999 (1006)
...++..+..++.++.|+||..|..++++|.+++.+..+++...++.+..
T Consensus 90 ~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~ 139 (169)
T PF02453_consen 90 AEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGV 139 (169)
T ss_dssp CCCCCHHHHHHHCCCHCT-TTGGG--------------------------
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 33455557788999999999999999999999999988888776665533
|
Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A. |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=90.96 E-value=1.8 Score=37.36 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=57.8
Q ss_pred CCCCcEEEEEECC-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeee
Q 042999 35 GSSSPYVIADFDG-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQF 113 (1006)
Q Consensus 35 g~~dPyv~v~~~~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l 113 (1006)
|.++-.+.+.+++ ...+|.-.. -.+..|++.|.+.+.. ++.|+|.||-.|.- .+-|...+.|++.
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-----sRELEI~VywrD~R--------slCav~~lrLEd~ 72 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-----SRELEIAVYWRDWR--------SLCAVKFLKLEDE 72 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-----ccEEEEEEEEecch--------hhhhheeeEhhhh
Confidence 3467788999986 446666653 3578899999999987 56899999987654 3556556666662
Q ss_pred eeeCCceeEEEEceecCCceeeeEEEEEEEEE
Q 042999 114 ARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYY 145 (1006)
Q Consensus 114 ~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~ 145 (1006)
. ...-.+|.+ +|.+...+.|
T Consensus 73 ~-----~~~~~~lep-------qg~l~~ev~f 92 (98)
T cd08687 73 R-----HEVQLDMEP-------QLCLVAELTF 92 (98)
T ss_pred c-----ccceecccc-------ccEEEEEEEe
Confidence 1 112344443 6777777776
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.92 E-value=1.1 Score=43.95 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=58.1
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEE--CCccc-eeeeeecCCCCCCceecceeeeeec---cCCCCcEEEEEEE
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL--ALQSA-RTRRGSMNNHSSSFHWHEDVFFVAA---EPFEDSLILLVED 530 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l--g~~~~-kT~~~~~~~~t~nP~w~e~~~f~v~---~~~~~~L~v~V~D 530 (1006)
++|.+....++... .....+.||++.+ |++.. ...+........++.|||-+.|.+. -|.+..|.|.||+
T Consensus 10 ~~i~i~~~~~~~~~----~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~ 85 (156)
T cd08380 10 LRIKIHGITNINLL----DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYA 85 (156)
T ss_pred eEEEEEeecccccc----CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEE
Confidence 77888888887642 1335677887766 65422 1111111112368999999888753 3445689999999
Q ss_pred CCCCc-cccceeEEEEEecccc
Q 042999 531 RTAKD-AAAVILGHAVVPVSSI 551 (1006)
Q Consensus 531 ~~~~~-~~d~~lG~~~i~l~~l 551 (1006)
.+... .++..||.+.++|=+.
T Consensus 86 ~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 86 VSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EecCCCCcceEEEEEeEEeEcc
Confidence 76432 0258999999988653
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.27 E-value=1.2 Score=44.45 Aligned_cols=99 Identities=20% Similarity=0.142 Sum_probs=63.8
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCeE----EEeeCcC----CCCCCeeeeEEEEEeeCCCCCCCceEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR----KRTSTKF----RDLNPVWNEPLEFIVSDPKNMDCEELE 83 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~~~----~kT~~~~----~t~nP~wne~f~f~~~~~~~~~~~~L~ 83 (1006)
....+.|+|..+.+++........|-|+.+.+ +++. ..|+... -...+.|||.+.|.+.-........|.
T Consensus 6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 44568899999999987654446788888866 4433 3444322 123577999999998654333467899
Q ss_pred EEEEeCCCCCCC----CCCCCceeEEEEEeCee
Q 042999 84 IEVYNDKRYCNG----SGRKNHFLGRVKLCGSQ 112 (1006)
Q Consensus 84 i~V~d~d~~~~~----~~~~d~~lG~~~v~l~~ 112 (1006)
|.+|+......+ .+..+..||.+.++|=+
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 999997654000 00134577777776554
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=90.02 E-value=1.6 Score=43.51 Aligned_cols=69 Identities=20% Similarity=0.188 Sum_probs=44.3
Q ss_pred EEEEEEEeecCcccCCCCCCCCCCcEEEEEE--CCccc---eeeeeecCCCCCCceecceeeeeec---cCCCCcEEEEE
Q 042999 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL--ALQSA---RTRRGSMNNHSSSFHWHEDVFFVAA---EPFEDSLILLV 528 (1006)
Q Consensus 457 L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l--g~~~~---kT~~~~~~~~t~nP~w~e~~~f~v~---~~~~~~L~v~V 528 (1006)
++|.|..+.++.. +.+.....||++.+ |++.. +|+.. .-+.++.|||-+.|.+. -|....|.|.|
T Consensus 12 friki~~~~~~~~----~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~---~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti 84 (178)
T cd08399 12 FRVKILGIDIPVL----PRNTDLTVFVEANIQHGQQVLCQRRTSPK---PFTEEVLWNTWLEFDIKIKDLPKGALLNLQI 84 (178)
T ss_pred EEEEEEeecccCc----CCCCceEEEEEEEEEECCeecccceeecc---CCCCCccccccEECccccccCChhhEEEEEE
Confidence 7888888764432 33334456777654 65443 33332 25667999998888753 33456899999
Q ss_pred EECC
Q 042999 529 EDRT 532 (1006)
Q Consensus 529 ~D~~ 532 (1006)
|+..
T Consensus 85 ~~~~ 88 (178)
T cd08399 85 YCGK 88 (178)
T ss_pred EEEe
Confidence 9964
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.9 Score=43.09 Aligned_cols=75 Identities=24% Similarity=0.260 Sum_probs=48.9
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCeE---EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~~~---~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..++|+|..+.++. .+......-||++.+ +++. .+|+...-+.++.|||.+.|++.-.....+..|.|.||+..
T Consensus 10 ~~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 35778888887442 222222335555544 4332 35666666778999999999987654445789999999974
Q ss_pred C
Q 042999 91 R 91 (1006)
Q Consensus 91 ~ 91 (1006)
.
T Consensus 89 ~ 89 (178)
T cd08399 89 A 89 (178)
T ss_pred c
Confidence 3
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=89.43 E-value=3.3 Score=35.76 Aligned_cols=86 Identities=12% Similarity=0.161 Sum_probs=58.2
Q ss_pred CCCCCeEEEEEECCEEE-EeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccccc
Q 042999 641 KGSTDAYCVAKYGKKWV-RTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLE 719 (1006)
Q Consensus 641 ~g~sdpyv~v~~~~~~~-rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 719 (1006)
.|.++-.|+++++|+.+ +|.... ..+..|++.|.+.+ +-+..|+|.||=.|- -.+=|-..+.|.+..
T Consensus 6 ~~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~L-dRsRELEI~VywrD~----------RslCav~~lrLEd~~ 73 (98)
T cd08687 6 MGCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLEL-ERSRELEIAVYWRDW----------RSLCAVKFLKLEDER 73 (98)
T ss_pred ecccceEEEEEEcCeEEeeccccc-cccccccceeEEEe-ecccEEEEEEEEecc----------hhhhhheeeEhhhhc
Confidence 45678899999998655 665433 35788999999987 445679999997764 225555666776632
Q ss_pred CCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 720 NNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 720 ~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
. ....+| ...|.+..+++|
T Consensus 74 ~----~~~~~l--------epqg~l~~ev~f 92 (98)
T cd08687 74 H----EVQLDM--------EPQLCLVAELTF 92 (98)
T ss_pred c----cceecc--------ccccEEEEEEEe
Confidence 1 223333 244888888887
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=88.84 E-value=1.6 Score=43.63 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=60.5
Q ss_pred EEEEEEEEeecCcccCCCCCCCCCCcEEEEEE--CCccc----eeeeeec-CCCCCCceecceeeeeec---cCCCCcEE
Q 042999 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL--ALQSA----RTRRGSM-NNHSSSFHWHEDVFFVAA---EPFEDSLI 525 (1006)
Q Consensus 456 ~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l--g~~~~----kT~~~~~-~~~t~nP~w~e~~~f~v~---~~~~~~L~ 525 (1006)
.++|+|..+.+++.. ......|-||++.+ |++.. .|+.... ..-...+.|||-+.|.+. -|.+..|.
T Consensus 9 ~~~i~v~~~h~~~~~---~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 9 LLSVTVSSLHRIPPT---WVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred cEEEEEEEeecCChH---HhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 388999999999975 33345788888866 66443 3332110 111235779998888753 34456899
Q ss_pred EEEEECCCCc--------cccceeEEEEEecccc
Q 042999 526 LLVEDRTAKD--------AAAVILGHAVVPVSSI 551 (1006)
Q Consensus 526 v~V~D~~~~~--------~~d~~lG~~~i~l~~l 551 (1006)
|.+|+..... ..+..||.+.++|=+.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9999876321 0257889888887653
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=87.07 E-value=3.7 Score=36.88 Aligned_cols=74 Identities=24% Similarity=0.193 Sum_probs=50.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEE--CCeE----EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 18 LVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR----KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 18 L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~~~----~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
+.+.+....+.........++-||.+.+ +++. ..|+.+.-...+.|||...|++.-.....+..|.|.+|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 5677777777655433223578888866 4433 456655556668999999998766444447789999998643
|
Outlier of C2 family. |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=84.68 E-value=3.5 Score=39.77 Aligned_cols=57 Identities=25% Similarity=0.178 Sum_probs=40.1
Q ss_pred EeeCcCCC-CCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCC----ceeEEEEEeCee
Q 042999 51 RTSTKFRD-LNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKN----HFLGRVKLCGSQ 112 (1006)
Q Consensus 51 kT~~~~~t-~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d----~~lG~~~v~l~~ 112 (1006)
.|+...-+ .++.|||.+.|++.-........|.|.||+.+.. ... ..||.+.+++=+
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~-----~~~~~~~~~lgw~n~~lFd 84 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK-----KKSKKKKVPLGWVNLPLFD 84 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS-----TTT--EEEEEEEEEEESB-
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC-----CccccceeEEEEEEEEeEC
Confidence 56666555 7999999999997654333477899999998766 333 588888887665
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=84.18 E-value=15 Score=36.91 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=41.3
Q ss_pred EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCCCCCCCceeEEEEEeC
Q 042999 49 RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCG 110 (1006)
Q Consensus 49 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l 110 (1006)
.++|.+...+.+|.|+|++.+.+.... .....|.|..++..... ......+|-+-++|
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~-~~~~HL~FtfrH~S~~~---k~~~~pfg~s~lpL 111 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDK-FRGSHLRFEFRHCSTKD---KGEKKLFGFSFVPL 111 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhh-CCCeeEEEEEEEeeecc---CCCCCceEEEEEee
Confidence 378899999999999999999987743 22678999888854330 01125677766665
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1006 | ||||
| 3kwt_A | 148 | Munc13-1 C2b-Domain, Calcium-Free Length = 148 | 4e-06 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 4e-06 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 6e-06 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 1e-04 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 1e-04 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 4e-04 |
| >pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 4e-39
Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDP 74
K+ + VV A+ L KD GSS PYV +KRT T + +LNPVW E F +
Sbjct: 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS 75
Query: 75 KNMDCEELEIEVYN------DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128
+ +++ V + + + FLG+ + + D V++ L+K
Sbjct: 76 SDR----IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMD---VWYNLDK 128
Query: 129 KSVFSWIRGEIGLRIYY 145
++ S + G I L I
Sbjct: 129 RTDKSAVSGAIRLHISV 145
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 2e-17
Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 13/147 (8%)
Query: 607 RPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCF 666
+ + + + ++ A+GL GS+D Y + GK RT+TI
Sbjct: 5 KQSVLDGTSKWSAKISITVVCAQGLQAKDKT----GSSDPYVTVQVGKTKKRTKTIYGNL 60
Query: 667 DPRWNEQYTWQVYDPCTVLTVGVFD-----NWRMFADASEERPDYRIGKIRIRVSTLENN 721
+P W E + ++ ++ + V V D R+ E D+ +G+ I V TL
Sbjct: 61 NPVWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDF-LGQTIIEVRTLSGE 119
Query: 722 KVYTTSYPLLVLLRTGLKKMGEIELAV 748
Y L G I L +
Sbjct: 120 M--DVWYNLDKRTDKSAVS-GAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-12
Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 46/153 (30%)
Query: 292 VEPMMYLFVKIRKARGLVPNEA-----PYVKI-----RTSSHYKKSKLASYRACDPHDSP 341
+ + + + A+GL + PYV + + + L +P
Sbjct: 13 SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNL----------NP 62
Query: 342 EWNQVFALFHNKNDSVSATLEITVWD--------------SPTENFLGGVCFDLSDVPVR 387
W + F + + S +++ V D +++FLG ++ +
Sbjct: 63 VWEENFHF---ECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE 119
Query: 388 DPPDSPLAPQWYRLEGEASDQNNRVSGDIQLAV 420
WY L+ + VSG I+L +
Sbjct: 120 -------MDVWYNLDKRTDK--SAVSGAIRLHI 143
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-07
Identities = 31/169 (18%), Positives = 54/169 (31%), Gaps = 46/169 (27%)
Query: 443 HTRSKVYQSPKLW--YLRVTVMEAQDLCIAHNLPPLTAPEIR-------VKAQLALQSAR 493
+ V W + +TV+ AQ L + + V Q+ R
Sbjct: 3 AVKQSVLDGTSKWSAKISITVVCAQGL----------QAKDKTGSSDPYVTVQVGKTKKR 52
Query: 494 TR--RGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLV--EDRTAKDAAAVI--------L 541
T+ G++N W E F D + + V ED K L
Sbjct: 53 TKTIYGNLNPV-----WEE-NFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFL 106
Query: 542 GHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLE 590
G ++ V ++ +D W+ L+ + G I+L + +E
Sbjct: 107 GQTIIEVRTLSGEMD------VWYNLDKRTDKSAVS---GAIRLHISVE 146
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 5e-27
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
L V+V+ A DLL D G S P+ + + R +T T +++LNP WN+ F + D
Sbjct: 14 ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIH- 72
Query: 77 MDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIR 136
+ LE+ V+++ + FLG+V + + L+ K + +
Sbjct: 73 ---DVLEVTVFDEDG-----DKPPDFLGKVAIPLLSIRDGQPNC---YVLKNKDLEQAFK 121
Query: 137 GEIGLRIYYYD 147
G I L +
Sbjct: 122 GVIYLEMDLIY 132
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 6e-18
Identities = 35/146 (23%), Positives = 53/146 (36%), Gaps = 37/146 (25%)
Query: 289 YDLVEPMMYLFVKIRKARGLVPNEA-----PYVKI-----RTSSHYKKSKLASYRACDPH 338
V+ + L VK+ KA L+ + P+ + R +H L
Sbjct: 6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNL--------- 56
Query: 339 DSPEWNQVFALFHNKNDSVSATLEITVWD----SPTENFLGGVCFDLSDVPVRDPPDSPL 394
+PEWN+VF + LE+TV+D P + FLG V L +
Sbjct: 57 -NPEWNKVFTF---PIKDIHDVLEVTVFDEDGDKPPD-FLGKVAIPLLSIR-------DG 104
Query: 395 APQWYRLEGEASDQNNRVSGDIQLAV 420
P Y L+ + D G I L +
Sbjct: 105 QPNCYVLKNK--DLEQAFKGVIYLEM 128
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 14/135 (10%)
Query: 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTW 676
VGIL++ +L A LL G +D +C+ + G ++T T+ +P WN+ +T+
Sbjct: 11 DVGILQVKVLKAADLLAADFS----GKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 66
Query: 677 QVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRT 736
+ D VL V VFD + PD+ +GK+ I + ++ + + Y L
Sbjct: 67 PIKDIHDVLEVTVFD-EDGD-----KPPDF-LGKVAIPLLSIRDGQ--PNCYVLKNKDLE 117
Query: 737 GLKKMGEIELAVRFV 751
K G I L + +
Sbjct: 118 QAFK-GVIYLEMDLI 131
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 4e-23
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 11/132 (8%)
Query: 16 RKLVVEVVDARDLLPKDGQGSSSPYVIA--DFDGQRKRTSTKFRDLNPVWNEPLEFIVSD 73
K+ + V+ A++L KD P+ D GQ T T L+P WN+ + V
Sbjct: 5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK 64
Query: 74 PKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFS 133
+ + I V+N K+ + FLG V+L + +R D G L K +
Sbjct: 65 T-----DSITISVWNHKKI--HKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSD 117
Query: 134 --WIRGEIGLRI 143
+RG+I + +
Sbjct: 118 TDAVRGQIVVSL 129
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 9e-12
Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 13/134 (9%)
Query: 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKY--GKKWVRTRTITDCFDPRWNEQYTWQV 678
+ L +L A+ L D + + T T+ + DP+WN+ Y V
Sbjct: 7 IRLTVLCAKNLAKKDFF----RLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV 62
Query: 679 YDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLEN--NKVYTTSYPLLVLLRT 736
+ +T+ V++ + ++ +G +R+ + + + Y +
Sbjct: 63 GKTDS-ITISVWN-HKKIHK---KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSD 117
Query: 737 GLKKMGEIELAVRF 750
G+I ++++
Sbjct: 118 TDAVRGQIVVSLQT 131
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-10
Identities = 24/136 (17%), Positives = 45/136 (33%), Gaps = 22/136 (16%)
Query: 294 PMMYLFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFA 348
+ + + + A+ L + P+ KI + + + P+WNQ +
Sbjct: 3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTL---DPKWNQHYD 59
Query: 349 LFHNKNDSVSATLEITVWD------SPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLE 402
L+ K D ++ I+VW+ FLG V + + Q L
Sbjct: 60 LYVGKTD----SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTG----YQRLDLC 111
Query: 403 GEASDQNNRVSGDIQL 418
+ V G I +
Sbjct: 112 KLNPSDTDAVRGQIVV 127
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 9e-23
Identities = 40/181 (22%), Positives = 64/181 (35%), Gaps = 30/181 (16%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVI------ADFDGQRKRTSTKFRDLNPVWNE 65
R + V+V+ L KD G+S PYV +T T + LNP WNE
Sbjct: 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNE 63
Query: 66 PLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEG----- 120
+ F V + + EV+++ R ++ FLG+V +
Sbjct: 64 EILFRVLPQR----HRILFEVFDENRL-----TRDDFLGQVDVPLYPLPTENPRMERPYT 114
Query: 121 LVYFPLEKKSVFSWIRGEIGLRIYYY----------DELSEEEHQHPPPPQDEPPPPQPP 170
F L +S S ++G + L++ Y D+ E E Q + P
Sbjct: 115 FKDFVLHPRSHKSRVKGYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQPDAATHLPH 174
Query: 171 Q 171
Sbjct: 175 P 175
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 3e-14
Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 23/162 (14%)
Query: 612 QLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG------KKWVRTRTITDC 665
+L ++ + ++ GL G++D Y V+T+TI
Sbjct: 1 ELHNDDTRVVRVKVIAGIGLAKKDIL----GASDPYVRVTLYDPMSGILTSVQTKTIKKS 56
Query: 666 FDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYT 725
+P+WNE+ ++V + VFD D +G++ + + L
Sbjct: 57 LNPKWNEEILFRVLPQRHRILFEVFD-ENRL------TRDDFLGQVDVPLYPLPTENPRM 109
Query: 726 TSYPLLVLLRTGLKK-----MGEIELAVRFVCPSMLPETSSV 762
+ G + L + ++ P E +
Sbjct: 110 ERPYTFKDFVLHPRSHKSRVKGYLRLKMTYL-PKNGSEDENA 150
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 1e-10
Identities = 27/156 (17%), Positives = 52/156 (33%), Gaps = 35/156 (22%)
Query: 293 EPMMYLFVKIRKARGLVPNEA-----PYVKI-----------RTSSHYKKSKLASYRACD 336
+ + VK+ GL + PYV++ + K L
Sbjct: 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSL------- 57
Query: 337 PHDSPEWNQVFALFHNKNDSVSATLEITVWDS---PTENFLGGVCFDLSDVPVRDPPD-S 392
+P+WN+ + + V+D ++FLG V L +P +P
Sbjct: 58 ---NPKWNEEILF---RVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMER 111
Query: 393 PLAPQWYRLEGEASDQNNRVSGDIQLAVWIGTQADE 428
P + + L + +RV G ++L + +
Sbjct: 112 PYTFKDFVLHPRSHK--SRVKGYLRLKMTYLPKNGS 145
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 34/177 (19%), Positives = 57/177 (32%), Gaps = 35/177 (19%)
Query: 456 YLRVTVMEAQDL------------CIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHS 503
+RV V+ L P++ V+ +T + S+N
Sbjct: 9 VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQ-------TKTIKKSLNP-- 59
Query: 504 SSFHWHEDVFFVAAEPFEDSLILLV--EDRTAKDAAAVILGHAVVPVSSI--DQRIDERH 559
W+E P ++ V E+R +D LG VP+ + + ER
Sbjct: 60 ---KWNE-EILFRVLPQRHRILFEVFDENRLTRDD---FLGQVDVPLYPLPTENPRMERP 112
Query: 560 VASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKP 616
K F L + + G ++LK+ DE A + P L +P
Sbjct: 113 YTFKDFVLHPRSHKSRVK---GYLRLKMTYLPKNGSEDENADQAEELEPGWVVLDQP 166
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 1e-22
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 2 TTPSQPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNP 61
+ +L + V+ A+ K SPYV DGQ K+T +P
Sbjct: 22 SGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSP 81
Query: 62 VWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
W +PL IV+ +L V++ + + + LG L
Sbjct: 82 KWKQPLTVIVTPV-----SKLHFRVWSHQTL-----KSDVLLGTAAL 118
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 7e-13
Identities = 18/135 (13%), Positives = 45/135 (33%), Gaps = 16/135 (11%)
Query: 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYT 675
L++ ++ A+ K Y + +T + P+W + T
Sbjct: 33 TMKSQLQITVISAKLKENKK----NWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLT 88
Query: 676 WQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVST-LENNKVYTTSYPLLVLL 734
V P + L V+ + + D +G + + L++N + + + L
Sbjct: 89 VIV-TPVSKLHFRVWS-HQTL------KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQL 140
Query: 735 RT---GLKKMGEIEL 746
+ +G++ +
Sbjct: 141 GGDKEPTETIGDLSI 155
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 9e-12
Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 19/144 (13%)
Query: 283 TERIHPYDLVEPMMYLFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDP 337
++ + L + + A+ + PYV++ KK++ C+
Sbjct: 23 GSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTE-----KCNN 77
Query: 338 HDSPEWNQVFALFHNKNDSVSATLEITVWDSPT---ENFLGGVCFDLSDVPVRDPPDSPL 394
+SP+W Q + L VW T + LG D+ + + L
Sbjct: 78 TNSPKWKQPLTVIVTPVS----KLHFRVWSHQTLKSDVLLGTAALDIYETL--KSNNMKL 131
Query: 395 APQWYRLEGEASDQNNRVSGDIQL 418
L+ + GD+ +
Sbjct: 132 EEVVVTLQLGGDKEPTETIGDLSI 155
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 3e-22
Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 13/137 (9%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTST-KFRDLNPVWNEPLEFIVSDPK 75
L V +V A+ L D + PYV Q ++++ + P WNE F VS+
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT 70
Query: 76 NMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWI 135
EL+ ++++ G ++ +G + G + + K +
Sbjct: 71 ----TELKAKIFDKDV-----GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEY--- 118
Query: 136 RGEIGLRIYYYDELSEE 152
+GEI + + +
Sbjct: 119 KGEIWVALSFKPSGPSS 135
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 8e-16
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 15/138 (10%)
Query: 615 KPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDC-FDPRWNEQ 673
P G LE+ ++ A+GL + D Y + ++ P WNE
Sbjct: 6 SGPHGTLEVVLVSAKGLEDADFL----NNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNET 61
Query: 674 YTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733
+ + V + T L +FD D D +G+ I + + + +V
Sbjct: 62 FIFTVSEGTTELKAKIFDKDVGTED------DA-VGEATIPLEPVFVEGSIPPTAYNVVK 114
Query: 734 LRTGLKKMGEIELAVRFV 751
+ GEI +A+ F
Sbjct: 115 ---DEEYKGEIWVALSFK 129
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 3e-10
Identities = 26/134 (19%), Positives = 51/134 (38%), Gaps = 30/134 (22%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
L V + A+GL + PYV++ + +KS +A +PEWN+ F
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGT----TPEWNETFIF--- 64
Query: 353 KNDSVSATLEITVWDSPTEN------FLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEAS 406
+ L+ ++D ++ +G L V + + P Y +
Sbjct: 65 TVSEGTTELKAKIFD---KDVGTEDDAVGEATIPLEPV----FVEGSIPPTAYNV----- 112
Query: 407 DQNNRVSGDIQLAV 420
++ G+I +A+
Sbjct: 113 VKDEEYKGEIWVAL 126
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 5e-22
Identities = 34/131 (25%), Positives = 47/131 (35%), Gaps = 9/131 (6%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
L V V A ++ PK G P V F ++K+T +LNPVWNE LEF +
Sbjct: 8 MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66
Query: 77 MDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVY--FPLEKKSVFSW 134
L I V + + +N +G + L Y L +
Sbjct: 67 DFSSSLGIIVKDFETI-----GQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQD- 120
Query: 135 IRGEIGLRIYY 145
I L I Y
Sbjct: 121 TGATIDLVIGY 131
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 2e-16
Identities = 25/138 (18%), Positives = 51/138 (36%), Gaps = 17/138 (12%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQV 678
G+L + + A + K G D + + +T+ + + +P WNE + +
Sbjct: 7 GMLRVIVESASNIPKTKF-----GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDL 61
Query: 679 Y----DPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLL 734
D + L + V D + + IG + + L ++ + Y L+ LL
Sbjct: 62 RGIPLDFSSSLGIIVKD-FETI-----GQNKL-IGTATVALKDLTGDQSRSLPYKLISLL 114
Query: 735 -RTGLKKMGEIELAVRFV 751
G I+L + +
Sbjct: 115 NEKGQDTGATIDLVIGYD 132
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 8e-12
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 28/136 (20%)
Query: 298 LFVKIRKARGLVPNEA----PYVKIRTSSHYKKSK-----LASYRACDPHDSPEWNQVFA 348
L V + A + + P V + KK+K L +P WN++
Sbjct: 9 LRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNEL----------NPVWNEILE 58
Query: 349 L-FHNKNDSVSATLEITVWD--SPTEN-FLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGE 404
S++L I V D + +N +G L D+ Y+L
Sbjct: 59 FDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSL-----PYKLISL 113
Query: 405 ASDQNNRVSGDIQLAV 420
+++ I L +
Sbjct: 114 LNEKGQDTGATIDLVI 129
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 87.1 bits (216), Expect = 4e-20
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 20/142 (14%)
Query: 15 VRKLVVEVVDARDLLPKDGQGSSSPYVI------ADFDGQRKRTSTKFRDLNPVWNEPLE 68
R + V V+ L KD G+S PYV + +T T + LNP WNE +
Sbjct: 19 SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEIL 78
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVK-----LCGSQFARRGDEGLVY 123
F V + L EV+++ R ++ FLG+V L
Sbjct: 79 FRVHPQQ----HRLLFEVFDENRL-----TRDDFLGQVDVPLYPLPTENPRLERPYTFKD 129
Query: 124 FPLEKKSVFSWIRGEIGLRIYY 145
F L +S S ++G + L++ Y
Sbjct: 130 FVLHPRSHKSRVKGYLRLKMTY 151
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 8e-16
Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 42/157 (26%)
Query: 288 PYDLVEPMMYLFVKIRKARGLVPNEA-----PYVKI-----------RTSSHYKKSKLAS 331
D E + V++ GL + PYV++ + K L
Sbjct: 13 LED-EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSL-- 69
Query: 332 YRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSPTEN------FLGGVCFDLSDVP 385
+P+WN+ + L V+D EN FLG V L +P
Sbjct: 70 --------NPKWNEEILF---RVHPQQHRLLFEVFD---ENRLTRDDFLGQVDVPLYPLP 115
Query: 386 VRDPPDS-PLAPQWYRLEGEASDQNNRVSGDIQLAVW 421
+P P + + L + +RV G ++L +
Sbjct: 116 TENPRLERPYTFKDFVLHPRSHK--SRVKGYLRLKMT 150
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 2e-12
Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 22/146 (15%)
Query: 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG------KKWVRTRTITDCFDPRW 670
I+ + ++ GL G++D Y V+T+TI +P+W
Sbjct: 18 NSRIVRVRVIAGIGLAKKDIL----GASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKW 73
Query: 671 NEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730
NE+ ++V+ L VFD R D+ +G++ + + L
Sbjct: 74 NEEILFRVHPQQHRLLFEVFD-ENRLT-----RDDF-LGQVDVPLYPLPTENPRLERPYT 126
Query: 731 LVLLRTGLKKM-----GEIELAVRFV 751
+ G + L + ++
Sbjct: 127 FKDFVLHPRSHKSRVKGYLRLKMTYL 152
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 8e-06
Identities = 29/159 (18%), Positives = 49/159 (30%), Gaps = 35/159 (22%)
Query: 446 SKVYQSPKLWYLRVTVMEAQDL------------CIAHNLPPLTAPEIRVKAQLALQSAR 493
+ +RV V+ L P+ V+ +
Sbjct: 11 GLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQ-------TK 63
Query: 494 TRRGSMNNHSSSFHWHEDVFFVAAEPFEDSLILLV--EDRTAKDAAAVILGHAVVPVSSI 551
T + S+N W+E P + L+ V E+R +D LG VP+ +
Sbjct: 64 TIKKSLNP-----KWNE-EILFRVHPQQHRLLFEVFDENRLTRDD---FLGQVDVPLYPL 114
Query: 552 D--QRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLC 588
ER K F L + + G ++LK+
Sbjct: 115 PTENPRLERPYTFKDFVLHPRSHKSRVK---GYLRLKMT 150
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 4e-19
Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 16/124 (12%)
Query: 295 MMYLFVKIRKARGLVPNEA--PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
M L V ++KA+ E YV ++ + KS + R P W Q F
Sbjct: 4 MSLLCVGVKKAKFDGAQEKFNTYVTLKVQNV--KSTTIAVRGS----QPSWEQDFMF--- 54
Query: 353 KNDSVSATLEITVWD--SPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNN 410
+ + + L + VW+ + +G V L + + +W L+ +A ++
Sbjct: 55 EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSN---EEGPGEWLTLDSQAIMADS 111
Query: 411 RVSG 414
+ G
Sbjct: 112 EICG 115
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 6e-11
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 17/123 (13%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNM 77
L V V A+ ++ + YV K T+ R P W + F ++
Sbjct: 7 LCVGVKKAKFDGAQE---KFNTYVTLKV-QNVKSTTIAVRGSQPSWEQDFMFEINRLD-- 60
Query: 78 DCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGL-VYFPLEKKSVFSWIR 136
L +EV+N + +G V + + +EG + L+ +++ +
Sbjct: 61 --LGLTVEVWNKGLI------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMA--D 110
Query: 137 GEI 139
EI
Sbjct: 111 SEI 113
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 6e-18
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 11/121 (9%)
Query: 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIA----DFDGQRKR-TSTKFRDLNPVWNEPL 67
L ++ A+ L P D G + PYV K T T NPVWNE L
Sbjct: 26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETL 85
Query: 68 EFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127
++ ++M + L I V ++ ++ N F+G + + + LE
Sbjct: 86 QYHGITEEDMQRKTLRISVCDEDKF-----GHNEFIGETRFSLKKL-KANQRKNFNICLE 139
Query: 128 K 128
+
Sbjct: 140 R 140
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 26/122 (21%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKI-----RTSSHYKKSKLASYRACDPHDSPEWNQVF 347
L I +A+GL P ++ PYVK+ + S+ ++K +P WN+
Sbjct: 31 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTL-RNTRNP----VWNETL 85
Query: 348 ALFHN--KNDSVSATLEITVWDSP--TEN-FLGGVCFDLSDVPVRDPPDSPLAPQWYRLE 402
+H + D TL I+V D N F+G F L + + LE
Sbjct: 86 Q-YHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKN-----FNICLE 139
Query: 403 GE 404
Sbjct: 140 RV 141
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 29/123 (23%), Positives = 46/123 (37%), Gaps = 24/123 (19%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYC-------VAKYGKKWVRTRTITDCFDPRWN 671
L+ I+ A+GL PM G D Y +K K RT+T+ + +P WN
Sbjct: 29 SNLQCTIIRAKGLKPM----DSNGLADPYVKLHLLPGASKSNKL--RTKTLRNTRNPVWN 82
Query: 672 EQYTWQVYDPC----TVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTS 727
E + L + V D F ++ IG+ R + L+ N+ +
Sbjct: 83 ETLQYHGITEEDMQRKTLRISVCD-EDKFG-----HNEF-IGETRFSLKKLKANQRKNFN 135
Query: 728 YPL 730
L
Sbjct: 136 ICL 138
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 7e-18
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 9/125 (7%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADF---DGQRKRTSTKFRDLNPVWNEPLE 68
F L V+++ A++L KD G+S P+V + T K ++LNP WNE
Sbjct: 22 NFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFL 81
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128
F + + L ++V + R+ +N +G V + ++ + L+
Sbjct: 82 FEGFPYEKVVQRILYLQVLDYDRF-----SRNDPIGEVSIPLNKV-DLTQMQTFWKDLKP 135
Query: 129 KSVFS 133
S
Sbjct: 136 SGPSS 140
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 28/118 (23%), Positives = 43/118 (36%), Gaps = 24/118 (20%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIR---TSSHYKKSKLASYRACDPHDSPEWNQVFAL 349
L VKI KA+ L + P+VKI H ++K+ + + P WN+ F
Sbjct: 28 LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR-KNLN----PHWNETFL- 81
Query: 350 FHN--KNDSVSATLEITVWDSPT---ENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLE 402
F V L + V D + +G V L+ V + W L+
Sbjct: 82 FEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQ-----TFWKDLK 134
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 6e-06
Identities = 32/169 (18%), Positives = 58/169 (34%), Gaps = 43/169 (25%)
Query: 569 GSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGA 628
GS G +R GRIQ + L + I+ A
Sbjct: 1 GSSGSSGSRENLGRIQFSVGYN-------------------------FQESTLTVKIMKA 35
Query: 629 RGLLPMKTKNGGKGSTDAYCVAKY---GKKWVRTRTITDCFDPRWNEQYTWQVYDPCTV- 684
+ L G++D + K + T+ +P WNE + ++ + V
Sbjct: 36 QELPAK----DFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVV 91
Query: 685 ---LTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730
L + V D + F+ R D IG++ I ++ ++ ++ T L
Sbjct: 92 QRILYLQVLD-YDRFS-----RNDP-IGEVSIPLNKVDLTQMQTFWKDL 133
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 1e-17
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKR-TSTKFRDLNPVWNEP 66
+L+V ++ A+DL ++ +PYV + D + KR T T + L P WN+
Sbjct: 14 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 73
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+ + LEI +++ R ++ FLG + +
Sbjct: 74 FIYSPVHRREFRERMLEITLWDQARV---REEESEFLGEILI 112
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-12
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 29/122 (23%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKI-----RTSSHYKKSKLASYRACDPHDSPEWNQVF 347
L V I A+ L E PYVKI R+ + +++K + +P +WNQ F
Sbjct: 20 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEP----KWNQTF 74
Query: 348 ALFHN--KNDSVSATLEITVWD----SPTEN-FLGGVCFDLSDVPVRDPPDSPLAPQWYR 400
+ + + LEIT+WD E+ FLG + +L + D P WY+
Sbjct: 75 I-YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYK 127
Query: 401 LE 402
L+
Sbjct: 128 LQ 129
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 22/112 (19%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYC-------VAKYGKKWVRTRTITDCFDPRWN 671
L + ILGA+ L + + Y + K+ RT+T+ +P+WN
Sbjct: 18 HQLIVTILGAKDLPSREDG----RPRNPYVKIYFLPDRSDKNKR--RTKTVKKTLEPKWN 71
Query: 672 EQYTWQVYDPCT----VLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLE 719
+ + + +L + ++D EE ++ +G+I I + T
Sbjct: 72 QTFIYSPVHRREFRERMLEITLWD-QARV---REEESEF-LGEILIELETAL 118
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNEP 66
+ ++V ++ AR+L D G+S PYV +R K+T TK R+LNP++NE
Sbjct: 12 NPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNES 71
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
F + + + + I V + +N +G++ L
Sbjct: 72 FAFDIP-TEKLRETTIIITVMD-----KDKLSRNDVIGKIYL 107
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 23/124 (18%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIR---TSSHYKKSKLASYRACDPHDSPEWNQVFAL 349
+ V I KAR L + PYVK+ +K K + + + P +N+ FA
Sbjct: 18 IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKK-TVTKKRNLN--PIFNESFAF 74
Query: 350 FHNKNDSVSATLEITVW--DSPTEN-FLGGVCFDLSDVP--------VRDPPDSPLAPQW 398
T+ ITV D + N +G + P + P P+A QW
Sbjct: 75 DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA-QW 133
Query: 399 YRLE 402
++L+
Sbjct: 134 HQLK 137
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-17
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKR-TSTKFRDLNPVWNEP 66
+L+V ++ A+DL ++ +PYV + D + KR T T + L P WN+
Sbjct: 17 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 76
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+ + LEI +++ R ++ FLG + +
Sbjct: 77 FIYSPVHRREFRERMLEITLWDQARV---REEESEFLGEILI 115
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 7e-12
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 29/126 (23%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKI-----RTSSHYKKSKLASYRACDPHDSPEWNQVF 347
L V I A+ L E PYVKI R+ + +++K + +P +WNQ F
Sbjct: 23 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEP----KWNQTF 77
Query: 348 ALFHN--KNDSVSATLEITVWD----SPTEN-FLGGVCFDLSDVPVRDPPDSPLAPQWYR 400
+ + + LEIT+WD E+ FLG + +L + D P WY+
Sbjct: 78 I-YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYK 130
Query: 401 LEGEAS 406
L+ S
Sbjct: 131 LQTHDS 136
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 48/169 (28%)
Query: 574 GCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLP 633
G + S G++ +KL + L + ILGA+ L
Sbjct: 1 GSSGSSGGQLSIKLW----FD---------------------KVGHQLIVTILGAKDLPS 35
Query: 634 MKTKNGGKGSTDAYC-------VAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCT--- 683
+ + Y + K+ RT+T+ +P+WN+ + +
Sbjct: 36 RED----GRPRNPYVKIYFLPDRSDKNKR--RTKTVKKTLEPKWNQTFIYSPVHRREFRE 89
Query: 684 -VLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731
+L + ++D EE ++ +G+I I + T + Y L
Sbjct: 90 RMLEITLWD-QARV---REEESEF-LGEILIELETALLDDE-PHWYKLQ 132
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 3e-17
Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 30/140 (21%)
Query: 17 KLVVEVVDARDLLPKD-----------GQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWN 64
L +++ +A L P PY+ + D R +T+TK + +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 65 EPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGL-VY 123
+ V + ++E+ V++D + F+ + + + G +
Sbjct: 67 DEFVTDVCNG-----RKIELAVFHDAPI-----GYDDFVANCTIQFEELLQNGSRHFEDW 116
Query: 124 FPLEKKSVFSWIRGEIGLRI 143
LE + G++ + I
Sbjct: 117 IDLEPE-------GKVYVII 129
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 7e-14
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 26/144 (18%)
Query: 617 PVGILELGILGARGLLPM-------KTKNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDP 668
G+L++ I A L P D Y + +T T P
Sbjct: 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSP 63
Query: 669 RWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTL--ENNKVYTT 726
W++++ V + + + VF + + D D+ + I+ L ++ +
Sbjct: 64 AWHDEFVTDVCNG-RKIELAVFHDAPIGYD------DF-VANCTIQFEELLQNGSRHFED 115
Query: 727 SYPLLVLLRTGLKKMGEIELAVRF 750
L+ G++ + +
Sbjct: 116 WID--------LEPEGKVYVIIDL 131
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-07
Identities = 20/143 (13%), Positives = 37/143 (25%), Gaps = 39/143 (27%)
Query: 297 YLFVKIRKARGLVPNEA----------------PYVKIRTSSHYKKSKLASYRACDPHDS 340
L +KI +A L P PY+ + + S
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTN----S 62
Query: 341 PEWNQVFALFHNKNDSVSATLEITVWDS---PTENFLGGVCFDLSDVPVRDPPDSPLAPQ 397
P W+ F N +E+ V+ ++F+ ++
Sbjct: 63 PAWHDEFV-TDVCN---GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFED--- 115
Query: 398 WYRLEGEASDQNNRVSGDIQLAV 420
W LE G + + +
Sbjct: 116 WIDLE---------PEGKVYVII 129
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 3e-17
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQRKR-TSTKFRDLNPVWNEPLE 68
F +L+V ++ A +L D G+S PYV D ++K T + LNPV+NE
Sbjct: 30 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 89
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
F V + + L + VY+ R+ K+ +G K+
Sbjct: 90 FKVP-YSELGGKTLVMAVYDFDRF-----SKHDIIGEFKV 123
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 4e-11
Identities = 26/152 (17%), Positives = 52/152 (34%), Gaps = 29/152 (19%)
Query: 268 SPKVINSSKPNGEVPTE---RIH---PYDLVEPMMYLFVKIRKARGLVPNEA-----PYV 316
SP + + E ++ YD L V I +A L + PYV
Sbjct: 2 SPGIGGGGGGILDSMVEKLGKLQYSLDYDFQN--NQLLVGIIQAAELPALDMGGTSDPYV 59
Query: 317 KIR---TSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVW--DSPTE 371
K+ ++K+ + +P +N+ F ++ TL + V+ D ++
Sbjct: 60 KVFLLPDKKKKFETKVHR-KTLNP----VFNEQFTFKVPYSELGGKTLVMAVYDFDRFSK 114
Query: 372 N-FLGGVCFDLSDVPVRDPPDSPLAPQWYRLE 402
+ +G ++ V +W L+
Sbjct: 115 HDIIGEFKVPMNTVDFGHV-----TEEWRDLQ 141
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAK---YGKKWVRTRTITDCFDPRWNEQYT 675
L +GI+ A L + G++D Y KK T+ +P +NEQ+T
Sbjct: 34 NQLLVGIIQAAELPAL----DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 89
Query: 676 WQVYD---PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731
++V L + V+D + F+ + D IG+ ++ ++T++ V L
Sbjct: 90 FKVPYSELGGKTLVMAVYD-FDRFS-----KHDI-IGEFKVPMNTVDFGHVTEEWRDLQ 141
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 4e-17
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADF---DGQRKRTSTKFRDLNPVWNEPLE 68
F +L+V ++ A +L D G+S PYV ++ T + LNPV+NE
Sbjct: 38 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 97
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
F V + + L + VY+ R+ K+ +G K+
Sbjct: 98 FKVP-YSELGGKTLVMAVYDFDRF-----SKHDIIGEFKV 131
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 8e-11
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 21/118 (17%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIR---TSSHYKKSKLASYRACDPHDSPEWNQVFAL 349
L V I +A L + PYVK+ ++K+ + +P +N+ F
Sbjct: 44 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNP----VFNEQFTF 98
Query: 350 FHNKNDSVSATLEITVWDSP--TEN-FLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGE 404
++ TL + V+D +++ +G ++ V +W L+
Sbjct: 99 KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV-----TEEWRDLQSA 151
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAK---YGKKWVRTRTITDCFDPRWNEQYT 675
L +GI+ A L + G++D Y KK T+ +P +NEQ+T
Sbjct: 42 NQLLVGIIQAAELPAL----DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 97
Query: 676 WQVYD---PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731
++V L + V+D + F+ + D IG+ ++ ++T++ V L
Sbjct: 98 FKVPYSELGGKTLVMAVYD-FDRFS-----KHDI-IGEFKVPMNTVDFGHVTEEWRDLQ 149
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 4e-17
Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 12/137 (8%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKR-TSTKFRDLNPVWNEP 66
R L++ +++ + L+ K G+ PYV I + R + T T +P ++E
Sbjct: 23 DAQDRVLLLHIIEGKGLISKQP-GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEH 81
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126
F V + D + L + V+N R++ +G + E ++ L
Sbjct: 82 FFFPV--QEEDDQKRLLVTVWNRASQ----SRQSGLIGCMSFGVKSLLTPDKEISGWYYL 135
Query: 127 EKKSVFSWIRGEIGLRI 143
+ + ++ R
Sbjct: 136 LGEHLGRTKHLKVARRR 152
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 6e-12
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 19/118 (16%)
Query: 298 LFVKIRKARGLVPNEA----PYVKIR---TSSHYKKSKLASYRACDPHDSPEWNQVFALF 350
L + I + +GL+ + PYVKI S + K + C P +++ F F
Sbjct: 29 LLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCR---DPAFHEHFF-F 84
Query: 351 HNKNDSVSATLEITVWD----SPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGE 404
+ + L +TVW+ S +G + F + + PD ++ WY L GE
Sbjct: 85 PVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSL---LTPDKEIS-GWYYLLGE 138
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 34/173 (19%), Positives = 58/173 (33%), Gaps = 48/173 (27%)
Query: 569 GSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGA 628
G + G QL+L ++ +L L I+
Sbjct: 2 GHHHHHHSHKVQGAGQLRLSID-------------------------AQDRVLLLHIIEG 36
Query: 629 RGLLPMKTKNGGKGSTDAYC-------VAKYGKKWVRTRTITDCFDPRWNEQYTWQV--Y 679
+GL+ G+ D Y ++ + +T+T+ DC DP ++E + + V
Sbjct: 37 KGLISK-----QPGTCDPYVKISLIPEDSRLRHQ--KTQTVPDCRDPAFHEHFFFPVQEE 89
Query: 680 DPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENN-KVYTTSYPLL 731
D L V V++ R IG + V +L K + Y LL
Sbjct: 90 DDQKRLLVTVWNRASQS------RQSGLIGCMSFGVKSLLTPDKEISGWYYLL 136
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 6e-17
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNEP 66
T KL V +++A++L D G S PYV +G+R K+T+ K LNP +NE
Sbjct: 21 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNES 80
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
F V + + ++ + V + KN +G+V +
Sbjct: 81 FSFEVP-FEQIQKVQVVVTVLD-----YDKIGKNDAIGKVFV 116
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 21/125 (16%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIR--TSSHYKKSKLASYRACDPHDSPEWNQVFALF 350
L V I +A+ L + PYVKI + K K + + + P +N+ F+
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLN--PYYNESFSFE 84
Query: 351 HNKNDSVSATLEITVWDSPT---ENFLGGVCFDLSDVP--------VRDPPDSPLAPQWY 399
+ +TV D + +G V + + P P+A QW+
Sbjct: 85 VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWH 143
Query: 400 RLEGE 404
L+ E
Sbjct: 144 TLQVE 148
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 8e-17
Identities = 32/155 (20%), Positives = 52/155 (33%), Gaps = 32/155 (20%)
Query: 3 TPSQPPPQQQFTVRKLVVEVVDARDLLPKD----------GQGSSSPYVIADFDGQRK-R 51
S +F L V + +A L P G PY+ D R +
Sbjct: 17 RGSMSSGTMKFN-GYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQ 75
Query: 52 TSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGS 111
TSTK + P +NE V+D LE+ V+++ +HF+ L
Sbjct: 76 TSTKQKTNKPTYNEEFCANVTDG-----GHLELAVFHETPL-----GYDHFVANCTLQFQ 125
Query: 112 QFARRGDEGLVY---FPLEKKSVFSWIRGEIGLRI 143
+ R + LE + G++ + I
Sbjct: 126 ELLRTTGASDTFEGWVDLEPE-------GKVFVVI 153
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 3e-14
Identities = 27/151 (17%), Positives = 49/151 (32%), Gaps = 19/151 (12%)
Query: 607 RPTAKQLWKPPVGILELGILGARGLLPMKTKNG------GKGSTDAYCVAKYGKKWV-RT 659
R + G L + I A GL P + G D Y + V +T
Sbjct: 17 RGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQT 76
Query: 660 RTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLE 719
T P +NE++ V D L + VF + D+ + ++ L
Sbjct: 77 STKQKTNKPTYNEEFCANVTDG-GHLELAVFHETPL-------GYDHFVANCTLQFQELL 128
Query: 720 NNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750
+ ++ V L+ G++ + +
Sbjct: 129 RTTGASDTFEGWVD----LEPEGKVFVVITL 155
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 5e-07
Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 18/141 (12%)
Query: 456 YLRVTVMEAQDL-----CIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHE 510
YLRV + EA L + H+L + +++ R + S ++ ++E
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89
Query: 511 DVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGS 570
+ + L + E D + + + + + W LE
Sbjct: 90 EFCANVTDGGHLELAVFHETPLGYD---HFVANCTLQFQELLRTTGASDTFEGWVDLEPE 146
Query: 571 CGRGCARSYCGRIQLKLCLEG 591
G++ + + L G
Sbjct: 147 ----------GKVFVVITLTG 157
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 5e-07
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 27/124 (21%)
Query: 297 YLFVKIRKARGLVPNEA---------------PYVKIRTSSHYKKSKLASYRACDPHDSP 341
YL V+I +A GL P PY+ + + ++ + P
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVS----VDQVRVGQTSTKQKTNKP 85
Query: 342 EWNQVFALFHNKNDSVSATLEITVWDS---PTENFLGGVCFDLSDVPVRDPPDSPLAPQW 398
+N+ F + + LE+ V+ ++F+ ++ R S W
Sbjct: 86 TYNEEF-CANVTDGGH---LELAVFHETPLGYDHFVANCTLQFQELL-RTTGASDTFEGW 140
Query: 399 YRLE 402
LE
Sbjct: 141 VDLE 144
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 9e-17
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNEP 66
Q T L V V+ AR L D G S PYV + +R K+T K N V+NE
Sbjct: 26 QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNEL 85
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
F + ++++ +E V + +R G +N +GR+ L
Sbjct: 86 FVFDIP-CESLEEISVEFLVLDSER-----GSRNEVIGRLVL 121
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 23/123 (18%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIR---TSSHYKKSKLASYRACDPHDSPEWNQVFAL 349
L V + KAR L ++ PYVK+ K K + + +N++F
Sbjct: 32 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTP---NAVFNELFVF 88
Query: 350 FHNKNDSVSATLEITVWDSP--TEN-FLGGVCFDLSDVP--------VRDPPDSPLAPQW 398
++E V DS + N +G + + + D P +A +W
Sbjct: 89 DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KW 147
Query: 399 YRL 401
+ L
Sbjct: 148 HML 150
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 1e-16
Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 16/127 (12%)
Query: 293 EPMMYLFVKIRKARGLVPNEA--PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALF 350
+ L V ++KA+ E YV ++ + +S + R P W Q F
Sbjct: 11 GILSLLCVGVKKAKFDGAQEKFNTYVTLKVQNV--ESTTIAVRGSQP----SWEQDFMF- 63
Query: 351 HNKNDSVSATLEITVWDS--PTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQ 408
+ + + L + VW+ + +G V L + + +W L+ +A
Sbjct: 64 --EINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSN---EEGPGEWLTLDSQAIMA 118
Query: 409 NNRVSGD 415
++ + G
Sbjct: 119 DSEICGT 125
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-08
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 15/117 (12%)
Query: 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPK 75
L V V A+ ++ + YV + T+ R P W + F ++
Sbjct: 14 SLLCVGVKKAKFDGAQE---KFNTYVTLKV-QNVESTTIAVRGSQPSWEQDFMFEINRLD 69
Query: 76 NMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGL-VYFPLEKKSV 131
L +EV+N + +G V + + +EG + L+ +++
Sbjct: 70 ----LGLTVEVWNKGLI------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAI 116
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 3e-16
Identities = 30/137 (21%), Positives = 53/137 (38%), Gaps = 9/137 (6%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYV---IADFDGQRKRTSTKFRDLNPVWNEPLE 68
F +L+V ++ A +L D G+S PYV + ++ T + LNPV+NE
Sbjct: 15 DFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 74
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128
F V + + L + VY+ R+ K+ +G K+ +
Sbjct: 75 FKVP-YSELAGKTLVMAVYDFDRF-----SKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 128
Query: 129 KSVFSWIRGEIGLRIYY 145
+ G+I + Y
Sbjct: 129 EKEEQEKLGDICFSLRY 145
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 8e-15
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNEPLE 68
T KL V +++A++L D G S PYV +G+R K+T+ K LNP +NE
Sbjct: 148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFS 207
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
F V + + ++ + V + KN +G+V +
Sbjct: 208 FEVP-FEQIQKVQVVVTVLD-----YDKIGKNDAIGKVFV 241
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 46/291 (15%), Positives = 105/291 (36%), Gaps = 62/291 (21%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIR---TSSHYKKSKLASYRACDPHDSPEWNQVFAL 349
L V I +A L + PYVK+ ++K+ +R +P +N+ F
Sbjct: 21 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV--HRKTL---NPVFNEQFTF 75
Query: 350 FHNKNDSVSATLEITVWDSPT---ENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEAS 406
++ TL + V+D + +G ++ V + +W L+
Sbjct: 76 KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE-----EWRDLQSAEK 130
Query: 407 DQNNRVSGDIQLAVWIGTQADEAFPEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVMEAQD 466
++ ++ GDI ++ A + L V ++EA++
Sbjct: 131 EEQEKL-GDICFSLRYVPTAGK----------------------------LTVVILEAKN 161
Query: 467 LCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHED-VFFVAAEPFED-SL 524
L ++ L+ P +++ + + ++ ++ ++ + +++E F V E + +
Sbjct: 162 L-KKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQV 220
Query: 525 ILLVEDRTAKDAAAVILGHAVVPVSSIDQRID--------ERHVASKWFPL 567
++ V D K +G V +S + R ++W L
Sbjct: 221 VVTVLDYD-KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 270
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 21/129 (16%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
L V I +A+ L + PYVKI + K+ K +P +N+ F+
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211
Query: 353 KNDSVSATLEITVWDSPTEN---FLGGVCFDLSDVP--------VRDPPDSPLAPQWYRL 401
+ +TV D +G V + + P P+A QW+ L
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 270
Query: 402 ----EGEAS 406
E +A
Sbjct: 271 QVEEEVDAM 279
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 53/274 (19%), Positives = 94/274 (34%), Gaps = 70/274 (25%)
Query: 457 LRVTVMEAQDLCIAHNLPPLTAPEIR---VKAQLALQSARTRRGSMNNHSSSFHWHEDVF 513
L V +++A LP L VK L + ++ + + ++E
Sbjct: 21 LLVGIIQAA------ELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFT 74
Query: 514 F--VAAEPFEDSLILLV--EDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEG 569
F +E +L++ V DR +K I+G VP++++D HV +W L+
Sbjct: 75 FKVPYSELAGKTLVMAVYDFDRFSKH---DIIGEFKVPMNTVDFG----HVTEEWRDLQ- 126
Query: 570 SCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGAR 629
+ G I L + P G L + IL A+
Sbjct: 127 -SAEKEEQEKLGDICFSLR-------------------------YVPTAGKLTVVILEAK 160
Query: 630 GLLPMKTKNGGKGSTDAYCV-------AKYGKKWVRTRTITDCFDPRWNEQYTWQVYD-- 680
L M G +D Y + KK +T + +P +NE ++++V
Sbjct: 161 NLKKMD----VGGLSDPYVKIHLMQNGKRLKKK--KTTIKKNTLNPYYNESFSFEVPFEQ 214
Query: 681 -PCTVLTVGVFDNWRMFADASEERPDYRIGKIRI 713
+ V V D + + IGK+ +
Sbjct: 215 IQKVQVVVTVLD-YDKI------GKNDAIGKVFV 241
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 17/142 (11%)
Query: 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAK---YGKKWVRTRTITDCFDPRWNE 672
L +GI+ A L + G++D Y KK T+ +P +NE
Sbjct: 16 FQNNQLLVGIIQAAELPAL----DMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 71
Query: 673 QYTWQVYD---PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYP 729
Q+T++V L + V+D + F IG+ ++ ++T++ V
Sbjct: 72 QFTFKVPYSELAGKTLVMAVYD-FDRF------SKHDIIGEFKVPMNTVDFGHVTEEWRD 124
Query: 730 LLVLLRTGLKKMGEIELAVRFV 751
L + +K+G+I ++R+V
Sbjct: 125 LQSAEKEEQEKLGDICFSLRYV 146
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 4e-16
Identities = 30/133 (22%), Positives = 61/133 (45%), Gaps = 20/133 (15%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYV--------------IADFDGQRKRTSTKFR 57
+ + L++ ++ AR+L+P+D G S P+V ++RT +
Sbjct: 14 NYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK 73
Query: 58 DLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRG 117
LNP WN+ + + + + + LE+ V++ R+ N FLG V + S +
Sbjct: 74 SLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRF-----SSNDFLGEVLIDLSSTS-HL 127
Query: 118 DEGLVYFPLEKKS 130
D ++PL++++
Sbjct: 128 DNTPRWYPLKEQT 140
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 6e-11
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 25/126 (19%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDS---------PEW 343
L + I +AR LVP + P+VK+ + + + + PEW
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 344 NQVFALFHN--KNDSVSATLEITVW--DSPTEN-FLGGVCFDLSDVPVRDPPDSPLAPQW 398
NQ + + + TLE+TVW D + N FLG V DLS D P+W
Sbjct: 80 NQTVI-YKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-----TPRW 133
Query: 399 YRLEGE 404
Y L+ +
Sbjct: 134 YPLKEQ 139
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 29/131 (22%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYCV--------------AKYGKKWVRTRTITD 664
G L + IL AR L+P G +D + + RT+ +
Sbjct: 18 GNLIIHILQARNLVPRDNN----GYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK 73
Query: 665 CFDPRWNEQYTWQVYDP----CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLEN 720
+P WN+ ++ L V V+D + F+ D+ +G++ I +S+ +
Sbjct: 74 SLNPEWNQTVIYKSISMEQLMKKTLEVTVWD-YDRFS-----SNDF-LGEVLIDLSSTSH 126
Query: 721 NKVYTTSYPLL 731
YPL
Sbjct: 127 LDNTPRWYPLK 137
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 4e-16
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 14/124 (11%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKR-TSTKFRDLNPVWNEP 66
L+V V DA++L+P D G S PYV I D + K+ T T LNP WNE
Sbjct: 27 HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNET 86
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126
F + ++ L +E+++ +N F+G + S+ + G +G +F L
Sbjct: 87 FRFQL--KESDKDRRLSVEIWDWDLT-----SRNDFMGSLSFGISELQKAGVDG--WFKL 137
Query: 127 EKKS 130
+
Sbjct: 138 LSQE 141
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 25/120 (20%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKI-----RTSSHYKKSKLASYRACDPHDSPEWNQVF 347
L V +R A+ LVP + PYVK+ S +K+K C + PEWN+ F
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTK---TIKCSLN--PEWNETF 87
Query: 348 ALFHNKNDSVSATLEITVW--DSPTEN-FLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGE 404
F K L + +W D + N F+G + F +S++ W++L +
Sbjct: 88 R-FQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV------DGWFKLLSQ 140
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 46/159 (28%)
Query: 580 CGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNG 639
GRI ++ ++ +L + + A+ L+PM
Sbjct: 19 RGRIYIQAHIDRE---------------------------VLIVVVRDAKNLVPMDPN-- 49
Query: 640 GKGSTDAYCV-----AKYGKKWVRTRTITDCFDPRWNEQYTWQVY--DPCTVLTVGVFDN 692
G +D Y + +T+TI +P WNE + +Q+ D L+V ++D
Sbjct: 50 --GLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDW 107
Query: 693 WRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731
+ D+ +G + +S L+ V + LL
Sbjct: 108 DLTSRN------DF-MGSLSFGISELQKAGV-DGWFKLL 138
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 5e-16
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNEP 66
L+V ++ L D G S P+V D + +T K + LNP +NE
Sbjct: 33 STQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEE 92
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+ + ++ + L+I V++ G+ N ++G +L
Sbjct: 93 FFYDIK-HSDLAKKSLDISVWD-----YDIGKSNDYIGGCQL 128
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-08
Identities = 28/126 (22%), Positives = 48/126 (38%), Gaps = 23/126 (18%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIR---TSSHYKKSKLASYRACDPHDSPEWNQVFAL 349
L V I + L +A P+VK+ K K + + PE+N+ F
Sbjct: 39 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHK-TQIKKKTLN--PEFNEEFFY 95
Query: 350 FHNKNDSVSATLEITVWDSP--TEN-FLGGVCFDLSDVP--------VRDPPDSPLAPQW 398
+D +L+I+VWD N ++GG +S D + +W
Sbjct: 96 DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RW 154
Query: 399 YRLEGE 404
++L+ E
Sbjct: 155 HQLQNE 160
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 5e-16
Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 10/138 (7%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYV---IADFDGQRKRTSTKFRDLNPVWNEPLE 68
+ +LVV ++ A DL KD G S PYV + ++ +T + LNP++NE +
Sbjct: 16 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 75
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL-CGSQFARRGDEGLVYFPLE 127
F V + +L VY+ R+ ++ +G+V L + A + + ++ +
Sbjct: 76 FSVP-LAELAQRKLHFSVYDFDRF-----SRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 129
Query: 128 KKSVFSWIRGEIGLRIYY 145
+ GE+ + Y
Sbjct: 130 EGGSEKADLGELNFSLCY 147
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 7e-15
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNEP 66
T L V ++ A +L D G S PYV A +G+R ++TS K LNP +NE
Sbjct: 148 LPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEA 207
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
L F V+ P++++ L I V + N +G ++
Sbjct: 208 LVFDVA-PESVENVGLSIAVVD-----YDCIGHNEVIGVCRV 243
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 47/269 (17%), Positives = 87/269 (32%), Gaps = 59/269 (21%)
Query: 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFF-- 514
L V +++A DL A + + P VK L + + ++ + + ++E F
Sbjct: 22 LVVRILQALDL-PAKDSNGFSDP--YVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSV 78
Query: 515 VAAEPFEDSLILLV--EDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCG 572
AE + L V DR ++ ++G V+ ++ W +
Sbjct: 79 PLAELAQRKLHFSVYDFDRFSRH---DLIGQVVLDNLLEL--AEQPPDRPLWRDILEGGS 133
Query: 573 RGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLL 632
G + LC + P G+L + I+ A L
Sbjct: 134 EKADL---GELNFSLC-------------------------YLPTAGLLTVTIIKASNLK 165
Query: 633 PMKTKNGGKGSTDAYCVAKY---GKKWV--RTRTITDCFDPRWNEQYTWQVYD---PCTV 684
M G +D Y A G++ +T + +P +NE + V
Sbjct: 166 AMDLT----GFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVG 221
Query: 685 LTVGVFDNWRMFADASEERPDYRIGKIRI 713
L++ V D + + IG R+
Sbjct: 222 LSIAVVD-YDCI------GHNEVIGVCRV 243
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 59/294 (20%), Positives = 102/294 (34%), Gaps = 66/294 (22%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIR---TSSHYKKSKLASYRACDPHDSPEWNQVFAL 349
L V+I +A L ++ PYVKI ++K+ +R +P +N+ F
Sbjct: 22 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKV--HRKTL---NPIFNETFQF 76
Query: 350 FHNKNDSVSATLEITVWDSPT---ENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEAS 406
+ L +V+D + +G V D PPD PL W + S
Sbjct: 77 SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDILEGGS 133
Query: 407 DQNNRVSGDIQLAVWIGTQADEAFPEAWSSDAPYVTHTRSKVYQSPKLWYLRVTVMEAQD 466
+ G++ S Y P L VT+++A +
Sbjct: 134 E--KADLGELNF---------------------------SLCYL-PTAGLLTVTIIKASN 163
Query: 467 LCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHED-VFFVAAEPFED-SL 524
L A +L + P ++ + + R+ S+ ++ + ++E VF VA E E+ L
Sbjct: 164 L-KAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGL 222
Query: 525 ILLV--EDRTAKDAAAVILGHAVVPVSSIDQRIDE---------RHVASKWFPL 567
+ V D + ++G V + D E R W L
Sbjct: 223 SIAVVDYDCIGHN---EVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 273
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 19/123 (15%)
Query: 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAK---YGKKWVRTRTITDCFDPRWNE 672
L + IL A L G +D Y KK +T+ +P +NE
Sbjct: 17 YGSDQLVVRILQALDLPAK----DSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72
Query: 673 QYTWQVYD---PCTVLTVGVFDNWRMFADASEERPDYRIGKIRI--RVSTLENNKVYTTS 727
+ + V L V+D R IG++ + + E
Sbjct: 73 TFQFSVPLAELAQRKLHFSVYDFDRF-------SRHDLIGQVVLDNLLELAEQPPDRPLW 125
Query: 728 YPL 730
+
Sbjct: 126 RDI 128
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 6e-16
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNEP 66
KL+V V R+L+ GS PYV D +R ++T + LNPV+++
Sbjct: 20 SSQRNKLIVVVHACRNLIAFSEDGSD-PYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQS 78
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+F VS + L++ V N + + LG+V +
Sbjct: 79 FDFSVS-LPEVQRRTLDVAVKNSGGF---LSKDKGLLGKVLV 116
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 20/122 (16%)
Query: 298 LFVKIRKARGLVPNEA----PYVKIR---TSSHYKKSKLASYRACDPHDSPEWNQVFALF 350
L V + R L+ PYV++ + K + +P ++Q F
Sbjct: 26 LIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTL---NPVFDQSFDFS 82
Query: 351 HNKNDSVSATLEITVWD-----SPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEA 405
+ + TL++ V + S + LG V L+ + QWY L ++
Sbjct: 83 VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKG-----WTQWYDLTEDS 137
Query: 406 SD 407
Sbjct: 138 GP 139
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 22/123 (17%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYC-------VAKYGKKWVRTRTITDCFDPRWN 671
L + + R L+ + +D Y + G++ +T +P ++
Sbjct: 24 NKLIVVVHACRNLIAF-----SEDGSDPYVRMYLLPDKRRSGRR--KTHVSKKTLNPVFD 76
Query: 672 EQYTWQVYD---PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSY 728
+ + + V L V V ++ + +GK+ + +++ E K +T Y
Sbjct: 77 QSFDFSVSLPEVQRRTLDVAVKNS-----GGFLSKDKGLLGKVLVALASEELAKGWTQWY 131
Query: 729 PLL 731
L
Sbjct: 132 DLT 134
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 8e-16
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 21/136 (15%)
Query: 14 TVRKLVVEVVDARDLL---PKDGQGSSSPYV---IADFDGQRKRTSTKFRDLNPVWNEPL 67
+ K V V+ A + D + PYV I+ RKRT D+NPVWNE
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60
Query: 68 EFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127
EFI+ + LEI + + + LG S + G++ V F
Sbjct: 61 EFILDPNQE---NVLEITLMDANYV------MDETLGTATFTVSSM-KVGEKKEVPFIFN 110
Query: 128 KKSVFSWIRGEIGLRI 143
+ + + + +
Sbjct: 111 QVT-----EMVLEMSL 121
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 1e-13
Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 22/139 (15%)
Query: 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQ 677
+ +L A + + + D Y RTR + +P WNE + +
Sbjct: 5 FTVVVLRATKVTKGAFGDML-DTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 678 VYDPCT-VLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRT 736
+ VL + + D D + +G VS+++ + +
Sbjct: 64 LDPNQENVLEITLMD-ANYVMD------ET-LGTATFTVSSMKVGEKKEVPFI------- 108
Query: 737 GLKKMGEIELAVRF-VCPS 754
++ E+ L + V S
Sbjct: 109 -FNQVTEMVLEMSLEVASS 126
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 8e-12
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 37/129 (28%)
Query: 297 YLFVKIRKARGLVPNEA--------PYVKIR---------TSSHYKKSKLASYRACDPHD 339
V + +A + PYV++ + H+
Sbjct: 4 KFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDI----------- 52
Query: 340 SPEWNQVFALFHNKNDSVSATLEITVWD--SPTENFLGGVCFDLSDVPVRDPPDSPLAPQ 397
+P WN+ F + + LEIT+ D + LG F +S + V + +
Sbjct: 53 NPVWNETFEF--ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----V 105
Query: 398 WYRLEGEAS 406
+
Sbjct: 106 PFIFNQVTE 114
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 9e-16
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 13 FTVRKLVVEVVDARDLLPKDGQG-SSSPYVIADF---DGQRKRTSTKFRDLNPVWNEPLE 68
F + VV + +AR L D Q +S PY+ + +T + L+P ++E
Sbjct: 19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFT 78
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
F + L + + R+ ++ +G V +
Sbjct: 79 FYGIPYTQIQELALHFTILSFDRF-----SRDDIIGEVLI 113
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 8e-08
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 20/107 (18%)
Query: 298 LFVKIRKARGLVPNEA------PYVKIR---TSSHYKKSKLASYRACDPHDSPEWNQVFA 348
V I++ARGL + PY+K+ H K+++ + D P +++ F
Sbjct: 24 FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLD----PAFDETFT 78
Query: 349 LFHN--KNDSVSATLEITVWDSPT---ENFLGGVCFDLSDVPVRDPP 390
F+ L T+ ++ +G V LS + + +
Sbjct: 79 -FYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK 124
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 17/108 (15%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAK---YGKKWVRTRTITDCFDPRWNEQYT 675
+ I ARGL M + ++D Y K V+TR + DP ++E +T
Sbjct: 22 KAFVVNIKEARGLPAM---DEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFT 78
Query: 676 WQVYDPCTV----LTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLE 719
+ + L + R R D IG++ I +S +E
Sbjct: 79 FYGIPYTQIQELALHFTILSFDRFS------RDDI-IGEVLIPLSGIE 119
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 4e-15
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 12 QFTVR----KLVVEVVDARDLLPKDGQGSSSPYV----IADFDGQRKR-TSTKFRDLNPV 62
+ +V L + V+ +DL+ +DG +PYV + D KR T + NP
Sbjct: 12 KLSVSYRNGTLFIMVMHIKDLVTEDG-ADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPT 70
Query: 63 WNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+NE L + + + EL++ V + + R+N FLG + L
Sbjct: 71 FNEMLVYSGYSKETLRQRELQLSVLSAESL-----RENFFLGGITL 111
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 2e-11
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 25/123 (20%)
Query: 298 LFVKIRKARGLVPNEA----PYVKI-----RTSSHYKKSKLASYRACDPHDSPEWNQVFA 348
LF+ + + LV + PYVK + +K+K++ + +P +N++
Sbjct: 22 LFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISR-KTRNP----TFNEML- 75
Query: 349 LFHN--KNDSVSATLEITVWDSP--TEN-FLGGVCFDLSDVPVRDPPDSPLAPQWYRLEG 403
++ K L+++V + EN FLGG+ L D + +WY+L
Sbjct: 76 VYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKE-----TVKWYQLTA 130
Query: 404 EAS 406
Sbjct: 131 ATY 133
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 25/124 (20%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYC-------VAKYGKKWVRTRTITDCFDPRWN 671
G L + ++ + L+ + Y K K+ +T+ +P +N
Sbjct: 20 GTLFIMVMHIKDLVTED-----GADPNPYVKTYLLPDTHKTSKR--KTKISRKTRNPTFN 72
Query: 672 EQYTWQVYDPCT----VLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTS 727
E + Y T L + V + + +G I + + +K
Sbjct: 73 EMLVYSGYSKETLRQRELQLSVLSAESL------RENFF-LGGITLPLKDFNLSKETVKW 125
Query: 728 YPLL 731
Y L
Sbjct: 126 YQLT 129
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 4e-14
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 12 QFTVRKLVVEVVDARDLLPKD-GQGSSSPYV----IADFDGQRKR-TSTKFRDLNPVWNE 65
+ + LVV V + L D + S+PYV + D Q KR TS K +NP+++E
Sbjct: 19 EQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDE 78
Query: 66 PLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
L + + + L+ V++ R+ +N FLG ++
Sbjct: 79 TLRYEIP-ESLLAQRTLQFSVWHHGRF-----GRNTFLGEAEI 115
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-11
Identities = 20/125 (16%), Positives = 41/125 (32%), Gaps = 24/125 (19%)
Query: 298 LFVKIRKARGLVPNEA------PYVKI-----RTSSHYKKSKLASYRACDPHDSPEWNQV 346
L V +++ L + PYVK ++ +K+ + +P +++
Sbjct: 25 LVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR-DTVNP----LYDET 79
Query: 347 FALFHNKNDSVSATLEITVWDSP--TEN-FLGGVCFDLSDVPVRDPPDSPLAPQWYRLEG 403
++ TL+ +VW N FLG + + L G
Sbjct: 80 LRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKK-----LDHCLPLHG 134
Query: 404 EASDQ 408
+ S +
Sbjct: 135 KISAE 139
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 7e-05
Identities = 24/161 (14%), Positives = 49/161 (30%), Gaps = 47/161 (29%)
Query: 580 CGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNG 639
GRI L Y L + + L +
Sbjct: 9 TGRIAFSLK----YE---------------------QQTQSLVVHVKECHQLAYA---DE 40
Query: 640 GKGSTDAYC-------VAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGV 689
K ++ Y ++ GK+ +T D +P ++E +++ + L V
Sbjct: 41 AKKRSNPYVKTYLLPDKSRQGKR--KTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSV 98
Query: 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730
+ F R + +G+ I++ + + +K PL
Sbjct: 99 WH-HGRFG-----RNTF-LGEAEIQMDSWKLDKKLDHCLPL 132
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 4e-14
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 16/107 (14%)
Query: 12 QFTVRKLVVEVVDARDLLP-------KDGQGSSSPYVIADF--DGQRKR-TSTKFRDLNP 61
L V V++ARDL P + S+PYV D + + T K + P
Sbjct: 22 DLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKP 81
Query: 62 VWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
V+ E F + L + V + ++ ++ +G+V +
Sbjct: 82 VFEERYTFEIP-FLEAQRRTLLLTVVDFDKF-----SRHCVIGKVSV 122
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 3e-08
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 28/123 (22%)
Query: 298 LFVKIRKARGLVPNEA------------PYVKIR---TSSHYKKSKLASYRACDPHDSPE 342
L V++ +AR L P + PYVKI + K++ + + P
Sbjct: 28 LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKR-KTQKP----V 82
Query: 343 WNQVFALFHNKNDSVSATLEITVWDSP--TEN-FLGGVCFDLSDVPVRDPPDSPLAPQWY 399
+ + + ++ TL +TV D + + +G V L +V + W
Sbjct: 83 FEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGG-----HWWK 137
Query: 400 RLE 402
L
Sbjct: 138 ALI 140
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-06
Identities = 29/171 (16%), Positives = 53/171 (30%), Gaps = 41/171 (23%)
Query: 569 GSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGA 628
GS G ++ G + Y +L V ++ A
Sbjct: 1 GSSGSSGSKYQLGMLHFSTQ----YDLLHNHLTV---------------------RVIEA 35
Query: 629 RGLLPMKTKNGG---KGSTDAYCVAKY---GKKWVRTRTITDCFDPRWNEQYTWQVYD-- 680
R L P + +G ++ Y K +T P + E+YT+++
Sbjct: 36 RDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLE 95
Query: 681 -PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730
L + V D + F+ R IGK+ + + ++ K L
Sbjct: 96 AQRRTLLLTVVD-FDKFS-----RHCV-IGKVSVPLCEVDLVKGGHWWKAL 139
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 9e-14
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIA----DFDGQRKRTSTKFRDLNPVWNEPL 67
+L V ++A + G YV +T+ K R L+ W E L
Sbjct: 22 DCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGL 78
Query: 68 EFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
++ + + L + + R+ ++ G ++L
Sbjct: 79 VLPLA-EEELPTATLTLTLRTCDRF-----SRHSVAGELRL 113
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 4e-11
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 17/113 (15%)
Query: 298 LFVKIRKARGLVPNEA--PYVKIRTSSHYKKSKLAS---YRACDPHDSPEWNQVFALFHN 352
LFV +A + YV+ ++ + + R W + L
Sbjct: 28 LFVTRLEAVTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHT----TWEEGLVLPLA 83
Query: 353 KNDSVSATLEITVWDS---PTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLE 402
+ + +ATL +T+ + G + L V QW L+
Sbjct: 84 EEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA-----QWGELK 131
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 1e-13
Identities = 18/131 (13%), Positives = 40/131 (30%), Gaps = 18/131 (13%)
Query: 8 PPQQQFTVR------KLVVEVVDARDLLPKDGQGSSSPYV------IADFDGQRKRTSTK 55
+ Q ++ + + ++ +L Q + ++ RT
Sbjct: 29 ATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPL 88
Query: 56 FRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFAR 115
V+NE +S P L ++V R LG ++ ++ R
Sbjct: 89 DASDTLVFNEVFWVSMSYPALHQK-TLRVDVCTTDRS-----HLEECLGGAQISLAEVCR 142
Query: 116 RGDEGLVYFPL 126
G+ ++ L
Sbjct: 143 SGERSTRWYNL 153
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 4e-11
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 23/118 (19%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKI------RTSSHYKKSKLASYRACDPHDSPEWNQV 346
+ I + L +++ +++ +++ D D+ +N+V
Sbjct: 45 FAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTR-----PLDASDTLVFNEV 99
Query: 347 FALFHNKNDSVSATLEITVWD---SPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRL 401
F + + TL + V S E LGG L++V + +WY L
Sbjct: 100 FWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEV----CRSGERSTRWYNL 153
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 8e-13
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQ-GSSSPYVIADF--DGQR---KRTSTKFRDLNPVWNE 65
+ +L VEV+ AR L K G + +PYV +G K+T + L+P++ +
Sbjct: 26 EDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQ 85
Query: 66 PLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
L F S + L++ V+ D G F+G ++
Sbjct: 86 SLVFDESPQGKV----LQVIVWGDY----GRMDHKCFMGVAQI 120
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 9e-08
Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 28/124 (22%)
Query: 298 LFVKIRKARGLVPNE------APYVKI-----RTSSHYKKSKLASYRACDPHDSPEWNQV 346
L V++ +AR L APYVK+ KK+++A + D P + Q
Sbjct: 32 LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR-KTLD----PLYQQS 86
Query: 347 FALFHNKNDSVSATLEITVW---DSPTEN-FLGGVCFDLSDVPVRDPPDSPLAPQWYRLE 402
F L++ VW F+G L ++ + WY+L
Sbjct: 87 LV-F--DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSM-----VIGWYKLF 138
Query: 403 GEAS 406
+S
Sbjct: 139 PPSS 142
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-07
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 14/118 (11%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAK--YGKKWV---RTRTITDCFDPRWNEQ 673
G LE+ ++ AR L G K + Y + +TR DP + +
Sbjct: 30 GQLEVEVIRARSLTQK---PGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQS 86
Query: 674 YTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731
+ VL V V+ ++ + + +G +I + L+ + + Y L
Sbjct: 87 LVFDESPQGKVLQVIVWGDYGRM-----DHKCF-MGVAQILLEELDLSSMVIGWYKLF 138
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 71.1 bits (173), Expect = 1e-12
Identities = 31/173 (17%), Positives = 57/173 (32%), Gaps = 17/173 (9%)
Query: 4 PSQPPPQQQFTVRKLVVEVVDARDLLPKDGQ---GSSSPYV---IADFDGQRKRTSTKFR 57
P Q + K V V+ A + + PYV I+ RKRT
Sbjct: 6 PYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN 65
Query: 58 DLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVK--LCGSQFAR 115
D+NPVWNE EFI+ LEI + + + LG + +
Sbjct: 66 DINPVWNETFEFILDPN---QENVLEITLMDANYV------MDETLGTATFTVSSMKVGE 116
Query: 116 RGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPPQ 168
+ + ++ + + + + + + L ++E ++
Sbjct: 117 KKEVPFIFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESM 169
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 57.3 bits (137), Expect = 2e-08
Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 24/131 (18%)
Query: 286 IHPYDLV----EPMMYLFVKIRKARGLVPNEA--------PYVKIR---TSSHYKKSKLA 330
I PY + + V + +A + PYV++ T K+++
Sbjct: 4 IDPYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTR-- 61
Query: 331 SYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSPT--ENFLGGVCFDLSDVPVRD 388
+ +P WN+ F F + + LEIT+ D+ + LG F +S + V +
Sbjct: 62 ---HFNNDINPVWNETFE-FI-LDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGE 116
Query: 389 PPDSPLAPQWY 399
+ P
Sbjct: 117 KKEVPFIFNQV 127
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 1e-06
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 5/81 (6%)
Query: 615 KPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWN 671
+ +L A + + D Y RTR + +P WN
Sbjct: 14 HQYSHKFTVVVLRATKV-TKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWN 72
Query: 672 EQYTWQVYDP-CTVLTVGVFD 691
E + + + VL + + D
Sbjct: 73 ETFEFILDPNQENVLEITLMD 93
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 6e-10
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 6 QPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNE 65
Q +Q + LVV A L ++ Y+ F GQ RT + + NP W +
Sbjct: 384 QDCCPRQRGLAHLVVSNFRAEHLWGDYTT-ATDAYLKVFFGGQEFRTGVVWNNNNPRWTD 442
Query: 66 PLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
++F L ++V+ D G + LG
Sbjct: 443 KMDFENVLLSTGG--PLRVQVW-DA----DYGWDDDLLGSCDR 478
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 1e-04
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 588 CLEGGYHVLDEAAH-VCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDA 646
C G + ++ C D + T + G+ L + R +TDA
Sbjct: 360 CRSGQHKSSHDSCQCECQDSKVTNQDCCPRQRGLAHLVVSNFRAEHLWGDYTT---ATDA 416
Query: 647 YCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD--PCTVLTVGVFD 691
Y +G + RT + + +PRW ++ ++ L V V+D
Sbjct: 417 YLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWD 463
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 3e-04
Identities = 17/108 (15%), Positives = 31/108 (28%), Gaps = 13/108 (12%)
Query: 282 PTERIHPYDLVEPMMYLFVKIRKARGL----VPNEAPYVKIRTSSHYKKSKLASYRACDP 337
+ +L V +A L Y+K+ ++ +
Sbjct: 380 KVTNQDCCPRQRGLAHLVVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGV-----VWN 434
Query: 338 HDSPEWNQVFALFHNKNDSVSATLEITVW--DSPTEN-FLGGVCFDLS 382
+++P W F N S L + VW D ++ LG
Sbjct: 435 NNNPRWTDKMD-FENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH 481
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 3e-07
Identities = 18/130 (13%), Positives = 48/130 (36%), Gaps = 14/130 (10%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPV-WNEPLEFIVSDPK 75
L+V + +L +G + F GQ + + ++E + V+
Sbjct: 22 ALIVHLKTVSEL-----RGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSI 76
Query: 76 NMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWI 135
+ + E LEI+++N + N +G ++ + + ++ + + I
Sbjct: 77 DRN-EVLEIQIFNYSKV-----FSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNN--AII 128
Query: 136 RGEIGLRIYY 145
+ + + + Y
Sbjct: 129 KTSLSMEVRY 138
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 1e-05
Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 13/123 (10%)
Query: 635 KTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPR-WNEQYTWQVYDPCT---VLTVGVF 690
KT + +G D + + +R + +C D ++E + W V VL + +F
Sbjct: 28 KTVSELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIF 87
Query: 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750
+ ++F++ IG R+ + + S L + + + VR+
Sbjct: 88 NYSKVFSNKL-------IGTFRMVLQKVVEENRVEVSDTL--IDDNNAIIKTSLSMEVRY 138
Query: 751 VCP 753
Sbjct: 139 QAA 141
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 1e-04
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 17/129 (13%)
Query: 296 MYLFVKIRKARGLVPNEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKND 355
M L V ++ L K+ S++ + D ++++ F +
Sbjct: 21 MALIVHLKTVSELRGRADRIAKVTFRGQSFYSRVLE----NCEDVADFDETFRWPVASSI 76
Query: 356 SVSATLEITVWDSPT---ENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNRV 412
+ LEI +++ +G L V + + D NN +
Sbjct: 77 DRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV---------VEENRVEVSDTLIDDNNAI 127
Query: 413 SG-DIQLAV 420
+ + V
Sbjct: 128 IKTSLSMEV 136
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 49.6 bits (117), Expect = 4e-06
Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 15/107 (14%)
Query: 7 PPPQQQF-TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQ-RKRTSTKFRDL---NP 61
P L + +++AR+L PK Y D RT++K R
Sbjct: 1 PNKDNSRRVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTV 55
Query: 62 VWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
W E EF L + +Y D K ++G V +
Sbjct: 56 FWGEHFEFNNLPA----VRALRLHLYRDSDK-KRKKDKAGYVGLVTV 97
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 4e-04
Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 18/157 (11%)
Query: 621 LELGILGARGLLPMKTKNGGKGSTDAYC-VAKYGKKWVRTRTIT---DCFDPRWNEQYTW 676
L+L I+ AR L P K YC + + RT + W E + +
Sbjct: 13 LKLWIIEARELPPKK---------RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEF 63
Query: 677 QVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRT 736
L + ++ + ++ +G + + V+TL YP V L T
Sbjct: 64 NNLPAVRALRLHLYRDSD---KKRKKDKAGYVGLVTVPVATLAGRHFTEQWYP--VTLPT 118
Query: 737 GLKKMGEIELAVRFVCPSMLPETSSVYGQPLLPRMHY 773
G G + + + Y
Sbjct: 119 GSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARY 155
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 5 SQPPPQQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWN 64
Q Q+ + +L+V V++A +L G S+PY Q T T LNP WN
Sbjct: 376 YQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWN 435
Query: 65 EPLEFIVSDPKNMDCEELEIEVYNDKRYC 93
+F + D + L + +++ ++
Sbjct: 436 FNCQFFIKDLYQ---DVLCLTLFDRDQFS 461
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 2e-04
Identities = 59/432 (13%), Positives = 126/432 (29%), Gaps = 108/432 (25%)
Query: 44 DFD-GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDC---EELEIEVYNDKRYCNGSGRK 99
DF+ G+ + +++D+ V+ + F+ N DC +++ + + + + K
Sbjct: 8 DFETGEHQY---QYKDILSVFEDA--FV----DNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 100 NHFLGRVKLCGSQFARRGDEGLVYF---PLEKKSVFSWI--------RGEIGLRIYYYDE 148
+ G ++L + + +E + F L + ++ R + Y ++
Sbjct: 59 DAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 149 LSEEEHQHPPPPQDEPPPPQP--------PQQQPGVCVVEEGR--------VFEVPGGHV 192
+ + + QP + +P V+ +G +V +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 193 EVCHPVPEIY---HGQPPPQAPIIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIRKM 249
C +I+ ++E Q + P H I + + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL- 234
Query: 250 QSGCAERVNVLKR-PNG----D--YSPKVINSSKPNGE--VPTERIHPYDLVEPMMYLFV 300
R+ K N + K N+ + + + T D + +
Sbjct: 235 -----RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 301 KIRKAR-GLVPNEAPYVKIRTSSHYKKSKLASYRACDPHDSPE----------------- 342
+ L P+E KS L Y C P D P
Sbjct: 290 SLDHHSMTLTPDEV------------KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 343 ------WNQVFALFHNKNDSVSATLEITVWD-SPTE---NFLGGVCFDLSDVPVRDPPDS 392
W+ H D ++ +E ++ P E F F + P
Sbjct: 338 RDGLATWDN---WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHI---PTI 390
Query: 393 PLAPQWYRLEGE 404
L+ W+ +
Sbjct: 391 LLSLIWFDVIKS 402
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1006 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.97 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.96 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.95 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.94 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.83 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.81 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.81 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.8 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.8 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.8 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.79 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.78 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.78 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.78 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.78 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.78 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.77 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.77 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.77 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.77 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.74 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.74 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.73 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.73 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.73 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.73 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.72 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.71 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.71 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.7 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.7 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.7 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.7 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.69 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.69 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.68 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.68 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.67 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.67 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.67 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.67 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.67 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.66 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.66 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.66 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.66 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.66 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.66 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.66 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.66 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.65 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.64 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.64 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.63 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.63 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.63 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.63 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.63 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.63 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.62 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.62 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.62 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.61 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.61 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.61 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.6 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.6 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.59 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.58 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.58 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.57 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.57 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.57 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.57 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.56 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.54 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.53 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.51 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.5 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.48 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.47 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.47 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.44 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.37 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.35 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.23 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.08 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.07 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.05 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.04 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.03 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.0 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.98 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 98.94 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.8 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.73 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.7 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.61 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 84.58 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=277.53 Aligned_cols=230 Identities=22% Similarity=0.241 Sum_probs=186.6
Q ss_pred EEEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC---ccceeeeeecCCCCCCceecceeeeeeccC--CCCcEEEEEE
Q 042999 455 WYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL---QSARTRRGSMNNHSSSFHWHEDVFFVAAEP--FEDSLILLVE 529 (1006)
Q Consensus 455 ~~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~---~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~--~~~~L~v~V~ 529 (1006)
..|+|+|++|+||+.+ |.++.+||||++.+++ +.++|++++ +++||.|||.|.|.+... ....|.|.||
T Consensus 19 ~~L~v~v~~a~~L~~~---d~~~~~dpyv~v~~~~~~~~~~~T~~~~---~~~nP~wne~f~f~v~~~~~~~~~l~~~V~ 92 (284)
T 2r83_A 19 NQLLVGIIQAAELPAL---DMGGTSDPYVKVFLLPDKKKKFETKVHR---KTLNPVFNEQFTFKVPYSELAGKTLVMAVY 92 (284)
T ss_dssp TEEEEEEEEEECCCCC---SSSSSCCEEEEEEEETCTTSCEECCCCC---SCSSCEEEEEEEECCCGGGCTTCEEEEEEE
T ss_pred CEEEEEEEEeeCCCCC---CCCCCCCeEEEEEEEcCCCceEeCCccc---CCCCCeeCceEEEEechHHhCcCEEEEEEE
Confidence 4699999999999977 6788999999999963 567788764 899999999999987654 3468999999
Q ss_pred ECCCCccccceeEEEEEeccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeCCccccccccccCCCCCcc
Q 042999 530 DRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPT 609 (1006)
Q Consensus 530 D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~ 609 (1006)
|.+..+ ++++||++.++|.++... .....|++|....+. .....|.|.+.+.+.
T Consensus 93 d~d~~~-~~~~lG~~~i~l~~l~~~----~~~~~w~~L~~~~~~--~~~~~G~i~l~l~~~------------------- 146 (284)
T 2r83_A 93 DFDRFS-KHDIIGEFKVPMNTVDFG----HVTEEWRDLQSAEKE--EQEKLGDICFSLRYV------------------- 146 (284)
T ss_dssp ECCSSS-CCCEEEEEEEEGGGCCCS----SCEEEEEECBCCSSC--CCCCCCEEEEEEEEE-------------------
T ss_pred ECCCCC-CCceeEEEEEcchhcccC----CcceeEEEeeccccc--cccccccEEEEEEec-------------------
Confidence 999754 589999999999998753 346789999875431 223468888776432
Q ss_pred ccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--C---EEEEeecccCCCCCeeccEEEEEEeCC---
Q 042999 610 AKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--K---KWVRTRTITDCFDPRWNEQYTWQVYDP--- 681 (1006)
Q Consensus 610 ~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~---~~~rT~~~~~~~nP~wne~~~~~v~~~--- 681 (1006)
+..|.|.|.|++|+||+++| . +|.+||||++.+. + ...||+++++++||.|||.|.|.+...
T Consensus 147 ------p~~~~l~v~v~~a~~L~~~d---~-~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 216 (284)
T 2r83_A 147 ------PTAGKLTVVILEAKNLKKMD---V-GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQ 216 (284)
T ss_dssp ------TTTTEEEEEEEEEESCCCCS---T-TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGG
T ss_pred ------CcCCceEEEEEEeECCCCcC---C-CCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhC
Confidence 13478999999999999865 4 7889999999984 2 467999999999999999999998754
Q ss_pred CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccc------------cCCceEeeEEEeeee
Q 042999 682 CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTL------------ENNKVYTTSYPLLVL 733 (1006)
Q Consensus 682 ~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l------------~~~~~~~~~~~L~~~ 733 (1006)
...|.|+|||+|.++ +|++||.+.|+++.+ ..+.....||+|...
T Consensus 217 ~~~l~i~V~d~d~~~-------~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 217 KVQVVVTVLDYDKIG-------KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp GEEEEEEEEECCSSS-------CCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred ceEEEEEEEeCCCCC-------CCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 347999999999987 899999999999863 234566899999764
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=278.58 Aligned_cols=217 Identities=20% Similarity=0.223 Sum_probs=175.9
Q ss_pred eEEEEEEEEEeecCcccCCCCCCCCCCcEEEEEE---CCccceeeeeecCCCCCCceecceeeeeeccCC--CCcEEEEE
Q 042999 454 LWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL---ALQSARTRRGSMNNHSSSFHWHEDVFFVAAEPF--EDSLILLV 528 (1006)
Q Consensus 454 ~~~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l---g~~~~kT~~~~~~~~t~nP~w~e~~~f~v~~~~--~~~L~v~V 528 (1006)
...|+|+|++|+||+.+ |.++.+||||++.+ +.++++|++++ +++||.|||.|.|.+.... ...|.|.|
T Consensus 19 ~~~L~v~v~~a~~L~~~---d~~g~~dPyv~v~l~~~~~~~~kT~v~~---~t~nP~wne~f~f~v~~~~l~~~~L~~~V 92 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAK---DSNGFSDPYVKIYLLPDRKKKFQTKVHR---KTLNPIFNETFQFSVPLAELAQRKLHFSV 92 (296)
T ss_dssp SCEEEEEEEEEECCCCC---STTSCCCEEEEEECTTSTTSCEECCCCC---SCSSCEEEEEEEEECCGGGGSSCCCEEEE
T ss_pred CCEEEEEEEEeECCCCc---CCCCCcCeEEEEEEEcCCCeeEeCCccC---CCCCCcEeeEEEEEecHHHhcCCEEEEEE
Confidence 35699999999999977 67889999999999 56788899765 8999999999999986443 45899999
Q ss_pred EECCCCccccceeEEEEEe-ccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeeeCCccccccccccCCCCC
Q 042999 529 EDRTAKDAAAVILGHAVVP-VSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFR 607 (1006)
Q Consensus 529 ~D~~~~~~~d~~lG~~~i~-l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~ 607 (1006)
||+|..+ ++++||++.++ +.++... ......|+.|....+ .....|.|.+.+...
T Consensus 93 ~d~d~~~-~~~~iG~~~i~~l~~~~~~---~~~~~~w~~L~~~~~---~~~~~G~i~vsl~y~----------------- 148 (296)
T 1dqv_A 93 YDFDRFS-RHDLIGQVVLDNLLELAEQ---PPDRPLWRDILEGGS---EKADLGELNFSLCYL----------------- 148 (296)
T ss_dssp EECCSSS-CCCEEEEEECCCTTGGGSS---CSSCCCCEECBCCSS---CCSCCCEEEEEEEEE-----------------
T ss_pred EEcCCCC-CCceEEEEEeccccccccC---Cccceeeeccccccc---cccccceEEEEEEec-----------------
Confidence 9999754 58999999996 5444421 123467999986543 233468888776432
Q ss_pred ccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--C---EEEEeecccCCCCCeeccEEEEEEeCC-
Q 042999 608 PTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--K---KWVRTRTITDCFDPRWNEQYTWQVYDP- 681 (1006)
Q Consensus 608 p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~---~~~rT~~~~~~~nP~wne~~~~~v~~~- 681 (1006)
+..|.|.|.|++|+||+++| . .|.+||||++.++ + ...||+++++++||+|||.|.|.+...
T Consensus 149 --------~~~~~l~v~v~~a~~L~~~d---~-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 216 (296)
T 1dqv_A 149 --------PTAGLLTVTIIKASNLKAMD---L-TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPES 216 (296)
T ss_dssp --------TTTTEEEEEEEEEESCCCCS---S-SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGG
T ss_pred --------cccceeEEEEEEeecCCccC---C-CCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHH
Confidence 13579999999999998865 4 7889999999995 2 578999999999999999999998754
Q ss_pred --CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEccccc
Q 042999 682 --CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLE 719 (1006)
Q Consensus 682 --~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 719 (1006)
...|.|+|||+|.++ +|++||.+.|++..+.
T Consensus 217 l~~~~L~i~V~d~d~~~-------~~~~iG~~~i~l~~~~ 249 (296)
T 1dqv_A 217 VENVGLSIAVVDYDCIG-------HNEVIGVCRVGPEAAD 249 (296)
T ss_dssp GGSCCCCCEEEECCSSS-------CCEEEEECCCSSCTTC
T ss_pred ccCcEEEEEEEeCCCCC-------CCceEEEEEECCccCC
Confidence 347999999999987 8999999999998764
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=256.34 Aligned_cols=233 Identities=24% Similarity=0.318 Sum_probs=181.6
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..+.|.|+|++|++|+.++..|.+||||+++++ .++++|+++++++||+|||+|.|.+...+ .....|.|+|||++
T Consensus 17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~-~~~~~l~~~V~d~d 95 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE-LAGKTLVMAVYDFD 95 (284)
T ss_dssp TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGG-CTTCEEEEEEEECC
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHH-hCcCEEEEEEEECC
Confidence 357899999999999999989999999999995 35789999999999999999999986532 22578999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC-ceeeeEEEEEEEEEEecCcccccCCCCCCCCCCCCCCC
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV-FSWIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPPQP 169 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~-~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (1006)
.+ +++++||++.+++.++ ..+.....|++|..... .....|+|.+.+.|.+..
T Consensus 96 ~~-----~~~~~lG~~~i~l~~l-~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~-------------------- 149 (284)
T 2r83_A 96 RF-----SKHDIIGEFKVPMNTV-DFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTA-------------------- 149 (284)
T ss_dssp SS-----SCCCEEEEEEEEGGGC-CCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTT--------------------
T ss_pred CC-----CCCceeEEEEEcchhc-ccCCcceeEEEeeccccccccccccEEEEEEecCcC--------------------
Confidence 98 7899999999999996 44556678999986432 223467777776654221
Q ss_pred CCCCCCcccccCCcccccCCCCccccCCCCccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhc
Q 042999 170 PQQQPGVCVVEEGRVFEVPGGHVEVCHPVPEIYHGQPPPQAPIIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIRKM 249 (1006)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 249 (1006)
T Consensus 150 -------------------------------------------------------------------------------- 149 (284)
T 2r83_A 150 -------------------------------------------------------------------------------- 149 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccccccceEEEEEEEeeCCCC-----CCCcEEEEEECC--
Q 042999 250 QSGCAERVNVLKRPNGDYSPKVINSSKPNGEVPTERIHPYDLVEPMMYLFVKIRKARGLVP-----NEAPYVKIRTSS-- 322 (1006)
Q Consensus 250 ~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~l~V~v~~a~~l~~-----~~dpyv~v~~~~-- 322 (1006)
..|.|.+++|++|+. .+||||++++..
T Consensus 150 ----------------------------------------------~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~ 183 (284)
T 2r83_A 150 ----------------------------------------------GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNG 183 (284)
T ss_dssp ----------------------------------------------TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETT
T ss_pred ----------------------------------------------CceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCC
Confidence 015588999999974 569999999852
Q ss_pred ---eeeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEEcCC---CCCccEEEEEeCCcCCCC--------C
Q 042999 323 ---HYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSP---TENFLGGVCFDLSDVPVR--------D 388 (1006)
Q Consensus 323 ---~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~D~~---~d~~lG~~~i~l~~l~~~--------~ 388 (1006)
..++|+++ +++.||+|||.|.|.+.........|.|+|||++ ++++||.+.+++..+... .
T Consensus 184 ~~~~~~kT~v~-----~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~ 258 (284)
T 2r83_A 184 KRLKKKKTTIK-----KNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLA 258 (284)
T ss_dssp EEEEEEECCCC-----CSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred cEeeeecccee-----cCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHH
Confidence 45788888 9999999999999987654211468999999987 489999999999763210 0
Q ss_pred CCCCCCcceeEEcccCC
Q 042999 389 PPDSPLAPQWYRLEGEA 405 (1006)
Q Consensus 389 ~~~~~~~~~w~~L~~~~ 405 (1006)
.+. ....+||+|....
T Consensus 259 ~~~-~~~~~W~~L~~~~ 274 (284)
T 2r83_A 259 NPR-RPIAQWHTLQVEE 274 (284)
T ss_dssp STT-SCEEEEEECBCHH
T ss_pred CCC-CchheeeecCCcc
Confidence 012 2345899998654
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-27 Score=255.59 Aligned_cols=236 Identities=22% Similarity=0.318 Sum_probs=180.2
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEE---CCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADF---DGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~---~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..+.|.|+|++|++|+.+|..|.+||||++++ +.++++|+++++++||+|||+|.|.+...+ +....|.|+|||+|
T Consensus 18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~L~~~V~d~d 96 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAE-LAQRKLHFSVYDFD 96 (296)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGG-GSSCCCEEEEEECC
T ss_pred CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHH-hcCCEEEEEEEEcC
Confidence 35789999999999999999999999999999 467899999999999999999999986532 22458999999999
Q ss_pred CCCCCCCCCCceeEEEEEe-CeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecCcccccCCCCCCCCCCCCCCC
Q 042999 91 RYCNGSGRKNHFLGRVKLC-GSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDELSEEEHQHPPPPQDEPPPPQP 169 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~-l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (1006)
.+ +++++||++.++ +.++...+.....|++|..........|+|.+.+.|.+...
T Consensus 97 ~~-----~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~~------------------- 152 (296)
T 1dqv_A 97 RF-----SRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAG------------------- 152 (296)
T ss_dssp SS-----SCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTTT-------------------
T ss_pred CC-----CCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEeccccc-------------------
Confidence 98 789999999995 44433333444579999765433445688888777643210
Q ss_pred CCCCCCcccccCCcccccCCCCccccCCCCccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhc
Q 042999 170 PQQQPGVCVVEEGRVFEVPGGHVEVCHPVPEIYHGQPPPQAPIIEESQPHGVHVQPEPVQIPPHDEPIPTAVPAAEIRKM 249 (1006)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 249 (1006)
T Consensus 153 -------------------------------------------------------------------------------- 152 (296)
T 1dqv_A 153 -------------------------------------------------------------------------------- 152 (296)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCCCCCCccccCCCCCCCCCCCCCCCcccccccceEEEEEEEeeCCCC-----CCCcEEEEEEC--C
Q 042999 250 QSGCAERVNVLKRPNGDYSPKVINSSKPNGEVPTERIHPYDLVEPMMYLFVKIRKARGLVP-----NEAPYVKIRTS--S 322 (1006)
Q Consensus 250 ~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~l~V~v~~a~~l~~-----~~dpyv~v~~~--~ 322 (1006)
.|.|.|++|++|+. .+||||+++++ +
T Consensus 153 -----------------------------------------------~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~ 185 (296)
T 1dqv_A 153 -----------------------------------------------LLTVTIIKASNLKAMDLTGFSDPYVKASLISEG 185 (296)
T ss_dssp -----------------------------------------------EEEEEEEEEESCCCCSSSSCCCEEEEECCCTTC
T ss_pred -----------------------------------------------eeEEEEEEeecCCccCCCCCCCcEEEEEEEeCC
Confidence 15588899999864 46999999996 3
Q ss_pred ---eeeeeeEeeccCCCCCCCCeeceEEEEeccCCCCCCCEEEEEEEcCC---CCCccEEEEEeCCcCCC-C-------C
Q 042999 323 ---HYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSP---TENFLGGVCFDLSDVPV-R-------D 388 (1006)
Q Consensus 323 ---~~~~T~~~~~~~~~~~~nP~wne~f~f~~~~~~~~~~~l~i~V~D~~---~d~~lG~~~i~l~~l~~-~-------~ 388 (1006)
.+++|+++ +++.||+|||.|.|.+.........|.|+|||++ ++++||.+.+++..+.. . -
T Consensus 186 ~~~~~~kT~v~-----~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~ 260 (296)
T 1dqv_A 186 RRLKKRKTSIK-----KNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEML 260 (296)
T ss_dssp CTTSCEECCCC-----CSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSS
T ss_pred cCccceeccee-----cCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHH
Confidence 56789999 9999999999999987654211468999999987 48999999999986532 0 0
Q ss_pred CCCCCCcceeEEcccCCC
Q 042999 389 PPDSPLAPQWYRLEGEAS 406 (1006)
Q Consensus 389 ~~~~~~~~~w~~L~~~~~ 406 (1006)
........+|+.|....+
T Consensus 261 ~~~~~~~~~w~~L~~~~~ 278 (296)
T 1dqv_A 261 ANPRKPVEHWHQLVEEKT 278 (296)
T ss_dssp SSSSSCSCSCCCCBBCC-
T ss_pred hCCCCceeEeeeccCccc
Confidence 001123457888877653
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=180.10 Aligned_cols=124 Identities=27% Similarity=0.450 Sum_probs=110.7
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCC
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRM 695 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~ 695 (1006)
+..|.|+|+|++|+||++++ . .|++||||++.++++.+||+++++++||.|||+|.|++.++...|.|+|||+|.+
T Consensus 10 ~~~~~L~v~v~~a~~L~~~d---~-~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 10 KDVGILQVKVLKAADLLAAD---F-SGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 85 (133)
T ss_dssp CCSEEEEEEEEEEESCCCSS---S-SSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred CCceEEEEEEEeeECCCCCC---C-CCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCC
Confidence 57899999999999999864 4 7899999999999999999999999999999999999998888999999999988
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 696 FADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
+ +|++||.+.|+|.++..+. ..||+|......+ ...|+|+|+++|.++
T Consensus 86 ~-------~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~~N 133 (133)
T 2ep6_A 86 K-------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLIYN 133 (133)
T ss_dssp E-------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEEEC
T ss_pred C-------CCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEEeC
Confidence 6 7999999999999998776 6899998755433 345999999999753
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=176.64 Aligned_cols=120 Identities=20% Similarity=0.201 Sum_probs=102.6
Q ss_pred CCcEEEEEEEeeccCCccCccCC----C--CCCCCCeEEEEEECCEE-EEeecccCCCCCeeccEEEEEEeCCCcEEEEE
Q 042999 616 PPVGILELGILGARGLLPMKTKN----G--GKGSTDAYCVAKYGKKW-VRTRTITDCFDPRWNEQYTWQVYDPCTVLTVG 688 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d----~--~~g~sdpyv~v~~~~~~-~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~ 688 (1006)
...|.|+|+|++|++|+++|... . +.|.+||||++.++++. .||+++++|+||+|||+|.|.+.+. ..|.|+
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~~-~~L~~~ 104 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLELA 104 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCCC-CEEEEE
Confidence 46899999999999999876210 0 13679999999999876 5999999999999999999998764 589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCC----ceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENN----KVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
|||+|.++ +|++||++.|+|.++..+ ...+.||+|.. .|+|+|+++|.
T Consensus 105 V~D~d~~~-------~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--------~G~i~l~l~~~ 156 (157)
T 2fk9_A 105 VFHETPLG-------YDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--------EGKVFVVITLT 156 (157)
T ss_dssp EEECCSSS-------SCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--------SCEEEEEEEEC
T ss_pred EEECCCCC-------CCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--------CcEEEEEEEEE
Confidence 99999987 899999999999999754 67799999942 49999999985
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=173.54 Aligned_cols=121 Identities=25% Similarity=0.339 Sum_probs=106.2
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCC-
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRM- 695 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~- 695 (1006)
..|.|+|+|++|+||+++| . +|++||||++.++++..||+++++++||.|||+|.|.+.++...|.|+|||+|..
T Consensus 15 ~~~~L~V~v~~a~~L~~~d---~-~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~ 90 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKD---K-TGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDI 90 (148)
T ss_dssp CCEEEEEEEEEEESCCCCS---T-TSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSH
T ss_pred cccEEEEEEEeeeCCCCCC---C-CCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCc
Confidence 3699999999999999865 4 7899999999999999999999999999999999999998889999999999975
Q ss_pred ----------CcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 696 ----------FADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 696 ----------~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
+ +|++||.+.|+|.++. .....||+|......+ ...|+|+|++.|+
T Consensus 91 ~~~~~~~~~~~-------~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~-~~~G~i~l~l~~e 146 (148)
T 3kwu_A 91 KSRVKQRFKRE-------SDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKS-AVSGAIRLHISVE 146 (148)
T ss_dssp HHHHHTTTSSC-------SSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTC-CCCCEEEEEEEEE
T ss_pred cccccccccCC-------CCccEEEEEEEHHHCc--CCCCEEEEcccCCCCC-CCceEEEEEEEEE
Confidence 4 7999999999999994 3448999997643333 2459999999986
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-19 Score=173.11 Aligned_cols=123 Identities=23% Similarity=0.319 Sum_probs=108.7
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeeccc-CCCCCeeccEEEEEEeCCCcEEEEEEEECCC
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTIT-DCFDPRWNEQYTWQVYDPCTVLTVGVFDNWR 694 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~-~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~ 694 (1006)
...|.|+|+|++|++|++++ . .|++||||++.++++.+||++++ +++||.|||+|.|.+.+....|.|+|||+|.
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d---~-~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~ 82 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDAD---F-LNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCC---S-SCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred CCcEEEEEEEEeccCCCCcc---c-CCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCC
Confidence 36899999999999999864 4 78999999999999999999998 8999999999999999888899999999998
Q ss_pred CCcCCCCCCCCceeEEEEEEcccc-cCCceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 695 MFADASEERPDYRIGKIRIRVSTL-ENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 695 ~~~~~~~~~~d~~lG~~~i~l~~l-~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
++ +|++||.+.|+|.++ ..+.....||+|. . .+ +..|+|+|++.|.+.
T Consensus 83 ~~-------~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~--~~-~~~G~i~l~l~~~p~ 131 (136)
T 1wfj_A 83 GT-------EDDAVGEATIPLEPVFVEGSIPPTAYNVV-K--DE-EYKGEIWVALSFKPS 131 (136)
T ss_dssp CT-------TTCCSEEEEEESHHHHHHSEEEEEEEEEE-E--TT-EEEEEEEEEEEEEEC
T ss_pred CC-------CCceEEEEEEEHHHhccCCCCCcEEEEee-c--CC-ccCEEEEEEEEEEeC
Confidence 87 899999999999999 5566668999997 2 22 345999999999875
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-19 Score=170.68 Aligned_cols=125 Identities=19% Similarity=0.302 Sum_probs=106.8
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeC----CCcEEEEEEEEC
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLTVGVFDN 692 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i~v~d~ 692 (1006)
..|.|.|+|++|++|++++ .|++||||+++++++..||+++++++||+|||+|.|.+.. ....|.|+|||+
T Consensus 5 ~~g~L~v~v~~a~~L~~~~-----~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~ 79 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTK-----FGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDF 79 (140)
T ss_dssp BCCEEEEEEEEEESCCCCS-----SSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEET
T ss_pred CCcEEEEEEEEeeCCCCCC-----CCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEEC
Confidence 4689999999999998865 3689999999999999999999999999999999999975 357999999999
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee-ccCCcccccEEEEEEEEecC
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL-LRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~-~~~g~~~~G~l~l~~~~~~~ 753 (1006)
|.++ +|++||.+.|+|.++..+...+.||+|... ...+....|+|+|+++|.+.
T Consensus 80 d~~~-------~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 80 ETIG-------QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp TCSS-------SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CCCC-------CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 9987 799999999999999888877899983322 22333345999999999863
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-19 Score=173.78 Aligned_cols=125 Identities=21% Similarity=0.338 Sum_probs=102.5
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC------EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEE
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK------KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGV 689 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~------~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v 689 (1006)
+..|.|+|+|++|++|++++ . .|++||||++.+++ ...||+++++++||.|||+|.|.+......|.|+|
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d---~-~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V 92 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKD---I-LGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEV 92 (153)
T ss_dssp TTCEEEEEEEEEEESCC-----------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEE
T ss_pred CCccEEEEEEEEeeCCCCCC---C-CCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEE
Confidence 46799999999999998864 4 78999999999963 67899999999999999999999988888999999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEEEcccccCCce------EeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKV------YTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~------~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
||+|.++ +|++||.+.|+|.++..+.. ...||+|......+ +..|+|+|++.|.+
T Consensus 93 ~d~d~~~-------~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 93 FDENRLT-------RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYLP 153 (153)
T ss_dssp EECCSSS-------CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEECC
T ss_pred EECCCCc-------CCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEEEEEEeC
Confidence 9999887 89999999999999976542 25899997754333 34599999999963
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.9e-19 Score=168.55 Aligned_cols=125 Identities=20% Similarity=0.244 Sum_probs=111.6
Q ss_pred CcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcC-CCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKF-RDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 13 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
...+.|.|+|++|++|+.++..|.+||||++++++++++|++++ +++||+|||+|.|.+... ...|.|+|||++.
T Consensus 7 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~----~~~l~~~V~d~~~ 82 (136)
T 1wfj_A 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG----TTELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS----CCEEEEEECCSSS
T ss_pred CCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCC----CCEEEEEEEECCC
Confidence 35789999999999999999889999999999999999999998 899999999999999873 5689999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
+ ++|++||++.+++.++...+.....|++|.+. ....|+|++++.|.+..
T Consensus 83 ~-----~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~---~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 83 G-----TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---EEYKGEIWVALSFKPSG 132 (136)
T ss_dssp C-----TTTCCSEEEEEESHHHHHHSEEEEEEEEEEET---TEEEEEEEEEEEEEECC
T ss_pred C-----CCCceEEEEEEEHHHhccCCCCCcEEEEeecC---CccCEEEEEEEEEEeCC
Confidence 8 78999999999999975656556789999832 35689999999999876
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=174.37 Aligned_cols=126 Identities=19% Similarity=0.330 Sum_probs=101.7
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC------EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEE
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK------KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGV 689 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~------~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v 689 (1006)
...|.|+|+|++|++|++++ . .|++||||++.+++ ..+||+++++++||.|||.|.|.+......|.|+|
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d---~-~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V 80 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKD---I-LGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEV 80 (176)
T ss_dssp TTCEEEEEEEEEEESCC------C-CCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCcC---C-CCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEE
Confidence 46799999999999998864 4 78999999999975 67899999999999999999999998778999999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEEEcccccCCceE-e-----eEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKVY-T-----TSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~-~-----~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
||+|.++ +|++||.+.|+|.++..+... + .||+|......+. ..|+|+|+++|.+.
T Consensus 81 ~d~d~~~-------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~-~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 81 FDENRLT-------RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR-VKGYLRLKMTYLPK 142 (176)
T ss_dssp EECC-----------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCC-CCSEEEEEEEECC-
T ss_pred EECCCCC-------CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCc-cCEEEEEEEEEEeC
Confidence 9999987 899999999999999876432 2 7999987554443 35999999999864
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-18 Score=164.75 Aligned_cols=129 Identities=23% Similarity=0.226 Sum_probs=110.0
Q ss_pred CcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCC
Q 042999 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRY 92 (1006)
Q Consensus 13 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~ 92 (1006)
...+.|.|+|++|++|+.++. |.+||||++++++++++|+++++++||+|||+|.|.+..........|.|+|||++.+
T Consensus 4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~ 82 (140)
T 2dmh_A 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI 82 (140)
T ss_dssp CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCS
T ss_pred CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCC
Confidence 456899999999999999998 9999999999999999999999999999999999999764322367899999999998
Q ss_pred CCCCCCCCceeEEEEEeCeeeeeeCCceeEEEE---ceecCCceeeeEEEEEEEEEEecC
Q 042999 93 CNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFP---LEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 93 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~---L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
++|++||++.+++.++ ..+.....|++ |.+... ....|+|++++.|.+..
T Consensus 83 -----~~~~~lG~~~i~l~~l-~~~~~~~~w~~l~~l~~~~~-~~~~G~l~l~~~~~p~~ 135 (140)
T 2dmh_A 83 -----GQNKLIGTATVALKDL-TGDQSRSLPYKLISLLNEKG-QDTGATIDLVIGYDPPS 135 (140)
T ss_dssp -----SSCCCCEEEEEEGGGT-CSSSCEEEEEEEEEEECTTC-CEEEEEEEEEEEECCCB
T ss_pred -----CCCceEEEEEEEHHHh-ccCCCceeEEeeeeccCCCC-CCCCCEEEEEEEEECCC
Confidence 7899999999999996 45555667987 554332 24579999999999865
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=170.30 Aligned_cols=129 Identities=28% Similarity=0.421 Sum_probs=103.8
Q ss_pred CCCCcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC------eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEE
Q 042999 10 QQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG------QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELE 83 (1006)
Q Consensus 10 ~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~ 83 (1006)
......+.|.|+|++|++|+.++..|.+||||+++++. ..++|+++++++||+|||+|.|.+... ...|.
T Consensus 14 ~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~l~ 89 (153)
T 3b7y_A 14 EDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ----QHRLL 89 (153)
T ss_dssp SCCTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT----TCEEE
T ss_pred cCCCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC----CCEEE
Confidence 34556789999999999999999889999999999963 578999999999999999999998864 46899
Q ss_pred EEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCc-----eeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 84 IEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDE-----GLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 84 i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~-----~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
|+|||++.+ ++|++||++.+++.++...... ..+|++|.+....+...|+|++++.|.|
T Consensus 90 ~~V~d~d~~-----~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 90 FEVFDENRL-----TRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp EEEEECCSS-----SCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred EEEEECCCC-----cCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 999999998 7899999999999997544332 2489999876545567899999999975
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=166.31 Aligned_cols=123 Identities=29% Similarity=0.479 Sum_probs=108.8
Q ss_pred CcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCC
Q 042999 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRY 92 (1006)
Q Consensus 13 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~ 92 (1006)
...+.|.|+|++|++|+.++..|.+||||++.+++++++|+++++++||+|||+|.|.+... ...|.|+|||++..
T Consensus 10 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~----~~~l~i~V~d~d~~ 85 (133)
T 2ep6_A 10 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI----HDVLEVTVFDEDGD 85 (133)
T ss_dssp CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT----TCEEEEEEEEEETT
T ss_pred CCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCC----CCEEEEEEEECCCC
Confidence 35789999999999999999889999999999999999999999999999999999999864 46899999999998
Q ss_pred CCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 93 CNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 93 ~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
+++++||++.+++.++ ..+. .+|++|.+........|+|++++.|..
T Consensus 86 -----~~~~~lG~~~i~l~~l-~~~~--~~w~~L~~~~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 86 -----KPPDFLGKVAIPLLSI-RDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp -----EEEEECCBCEEEGGGC-CSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred -----CCCCeeEEEEEEHHHc-cCCC--ceEEEeecCCCCCccceEEEEEEEEEe
Confidence 7899999999999996 3332 479999876555567899999999864
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-18 Score=165.77 Aligned_cols=126 Identities=29% Similarity=0.460 Sum_probs=107.8
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
..+.|.|+|++|++|+.++..|.+||||++.+++++++|+++++++||+|||+|.|.+... ...|.|+|||++...
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~----~~~l~~~v~d~d~~~ 90 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNS----SDRIKVRVLDEDDDI 90 (148)
T ss_dssp CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECST----TCEEEEEEEECCCSH
T ss_pred cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCC----CCEEEEEEEECCCCc
Confidence 4689999999999999999999999999999999999999999999999999999999875 468999999999730
Q ss_pred ------CCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 94 ------NGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 94 ------~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
....+++++||++.+++.++ .....+|++|.+.+..+...|+|+|++.|.
T Consensus 91 ~~~~~~~~~~~~~~~lG~~~i~l~~l---~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 91 KSRVKQRFKRESDDFLGQTIIEVRTL---SGEMDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp HHHHHTTTSSCSSEEEEEEEEEGGGC---CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred cccccccccCCCCccEEEEEEEHHHC---cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 00004799999999999996 344568999997766666789999999985
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=165.57 Aligned_cols=120 Identities=18% Similarity=0.198 Sum_probs=100.6
Q ss_pred CcEEEEEEEeeccCCccCccCC---C----CCCCCCeEEEEEECCEE-EEeecccCCCCCeeccEEEEEEeCCCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKN---G----GKGSTDAYCVAKYGKKW-VRTRTITDCFDPRWNEQYTWQVYDPCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d---~----~~g~sdpyv~v~~~~~~-~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~ 688 (1006)
..|.|+|+|++|+||+++|... . ..+.+||||++.+++.. .+|+++++|+||+|||+|.|.+.+. ..|.|+
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~ 82 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA 82 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEE
Confidence 3689999999999999865200 0 01239999999998765 5999999999999999999999776 789999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCC--ceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENN--KVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
|||+|.++ +|++||.+.|+|.++..+ ...+.||+|.. .|+|+|+++|..
T Consensus 83 V~d~d~~~-------~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--------~G~i~l~l~~~~ 133 (136)
T 1gmi_A 83 VFHDAPIG-------YDDFVANCTIQFEELLQNGSRHFEDWIDLEP--------EGKVYVIIDLSG 133 (136)
T ss_dssp EEECCSSS-------SCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--------SCEEEEEEEEEE
T ss_pred EEeCCCCC-------CCCEEEEEEEEHHHhcccCCCCccEEEEcCC--------CeEEEEEEEEEe
Confidence 99999887 899999999999999864 34588998842 499999999975
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=172.53 Aligned_cols=128 Identities=27% Similarity=0.394 Sum_probs=103.0
Q ss_pred CCcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC------eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEE
Q 042999 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG------QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIE 85 (1006)
Q Consensus 12 ~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~ 85 (1006)
....+.|.|+|++|++|+.++..|.+||||++++++ .+++|+++++++||+|||+|.|.+... ...|.|+
T Consensus 4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~----~~~L~~~ 79 (176)
T 3m7f_B 4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ----RHRILFE 79 (176)
T ss_dssp CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT----TCEEEEE
T ss_pred CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC----CCEEEEE
Confidence 346789999999999999999889999999999974 578999999999999999999999864 4689999
Q ss_pred EEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCcee-----EEEEceecCCceeeeEEEEEEEEEEec
Q 042999 86 VYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGL-----VYFPLEKKSVFSWIRGEIGLRIYYYDE 148 (1006)
Q Consensus 86 V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~-----~w~~L~~~~~~~~~~G~i~l~~~~~~~ 148 (1006)
|||++.+ ++|++||++.++|.++........ +||+|..+...++..|+|+|++.|.+.
T Consensus 80 V~d~d~~-----~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 80 VFDENRL-----TRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp EEECC---------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred EEECCCC-----CCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 9999998 789999999999999754433211 799999876666678999999999987
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=167.46 Aligned_cols=116 Identities=26% Similarity=0.309 Sum_probs=100.6
Q ss_pred cccEEEEEEEEecCCCCCCC----------CCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceE
Q 042999 14 TVRKLVVEVVDARDLLPKDG----------QGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~----------~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L 82 (1006)
..+.|+|+|++|++|+++|. .|.+||||++.+++++ .+|+++++|+||+|||+|.|.+.. ...|
T Consensus 27 ~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-----~~~L 101 (157)
T 2fk9_A 27 FNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-----GGHL 101 (157)
T ss_dssp EEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-----ECEE
T ss_pred CccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-----CCEE
Confidence 46899999999999998873 3679999999999866 799999999999999999999875 3589
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeee---CCceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARR---GDEGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~---~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
.|+|||+|.+ ++|++||++.++++++... +.....||+|.+ +|+|+|+++|.
T Consensus 102 ~~~V~D~d~~-----~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-------~G~i~l~l~~~ 156 (157)
T 2fk9_A 102 ELAVFHETPL-----GYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-------EGKVFVVITLT 156 (157)
T ss_dssp EEEEEECCSS-----SSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-------SCEEEEEEEEC
T ss_pred EEEEEECCCC-----CCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-------CcEEEEEEEEE
Confidence 9999999999 7899999999999997543 245678999964 79999999874
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=164.46 Aligned_cols=118 Identities=16% Similarity=0.212 Sum_probs=99.7
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC---EEEEeecccCCCCCeeccEEEEEEeC-CCcEEEEEEEECC
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK---KWVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVGVFDNW 693 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~---~~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~v~d~~ 693 (1006)
.|.|.|+|++|+||++++..|. .|++||||++.+++ +..||+++++++||+|||+|.|.+.. ....|.|+|||+|
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~-~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d 80 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDM-LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHH-HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred CcEEEEEEEeeeCCCCCCcccc-CCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECC
Confidence 4899999999999998643344 68999999999985 78999999999999999999999964 4578999999999
Q ss_pred CCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 694 RMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 694 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
.. +|++||.+.|+|.++..+.....||+|.. ...|+|++++..
T Consensus 81 ~~--------~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le~ 123 (126)
T 1rlw_A 81 YV--------MDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEV 123 (126)
T ss_dssp SS--------CCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEEC
T ss_pred CC--------CCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEEe
Confidence 75 48899999999999999988899999953 123667766554
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=159.16 Aligned_cols=121 Identities=29% Similarity=0.417 Sum_probs=103.3
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG--QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRY 92 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~--~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~ 92 (1006)
...|+|+|++|++|+++|..|.+||||++.+++ +.++|+++++++||+|||+|.|.+... ..|.|+|||++.+
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-----~~l~~~v~d~d~~ 78 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-----DSITISVWNHKKI 78 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-----CCEEEEEEEGGGT
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-----CEEEEEEEECCCC
Confidence 467999999999999999999999999999974 789999999999999999999999774 3599999999988
Q ss_pred CCCCCCC---CceeEEEEEeCeeeeeeCCceeEEEEceecC--CceeeeEEEEEEEEE
Q 042999 93 CNGSGRK---NHFLGRVKLCGSQFARRGDEGLVYFPLEKKS--VFSWIRGEIGLRIYY 145 (1006)
Q Consensus 93 ~~~~~~~---d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~--~~~~~~G~i~l~~~~ 145 (1006)
++ |++||++.++++.+........+|++|.... ......|+|.+++.+
T Consensus 79 -----~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 79 -----HKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp -----TSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred -----CCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 44 8999999999998645555556899998752 333568999999875
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=165.27 Aligned_cols=126 Identities=21% Similarity=0.280 Sum_probs=105.6
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
..+.|.|+|++|++|+.++..+.+||||++++++++++|+++++++||+|||+|.|.+.. ...|.|+|||++.+
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-----~~~L~~~V~D~d~~- 107 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-----VSKLHFRVWSHQTL- 107 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-----TCEEEEEEEECCSS-
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-----CCEEEEEEEECCCC-
Confidence 467899999999999944444559999999999999999999999999999999999853 56899999999998
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCc----eeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDE----GLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~----~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
++|++||++.+++.++...... ...|++|.+........|+|.+.+.++...
T Consensus 108 ----~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~~ 163 (173)
T 2nq3_A 108 ----KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLE 163 (173)
T ss_dssp ----SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEECC
T ss_pred ----CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeecc
Confidence 7899999999999997543221 257999998644446789999999999775
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=158.24 Aligned_cols=124 Identities=17% Similarity=0.233 Sum_probs=99.0
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC--EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCC
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK--KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRM 695 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~--~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~ 695 (1006)
...|+|+|++|++|+++| . .|++||||++.+++ +..||+++++++||+|||+|.|.+.++.. |.|+|||+|.+
T Consensus 4 ~~~L~V~v~~a~~L~~~d---~-~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~-l~~~v~d~d~~ 78 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKD---F-FRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTDS-ITISVWNHKKI 78 (132)
T ss_dssp EEEEEEEEEEEESCCCCS---T-TCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTCC-EEEEEEEGGGT
T ss_pred eEEEEEEEEEeECCCCCC---C-CCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCCE-EEEEEEECCCC
Confidence 468999999999998865 4 78999999999974 78999999999999999999999987654 99999999987
Q ss_pred CcCCCCCCCCceeEEEEEEccccc-CCceEeeEEEeeeeccCC-cccccEEEEEEEE
Q 042999 696 FADASEERPDYRIGKIRIRVSTLE-NNKVYTTSYPLLVLLRTG-LKKMGEIELAVRF 750 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~g-~~~~G~l~l~~~~ 750 (1006)
+.. ..|++||.+.|++..+. .......|++|....+.+ .+..|+|++++.+
T Consensus 79 ~~~----~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 79 HKK----QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp TSS----TTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCC----CCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 600 02899999999998882 222224789997754322 2345999998865
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=160.03 Aligned_cols=118 Identities=19% Similarity=0.310 Sum_probs=100.9
Q ss_pred cccEEEEEEEEecCCCCCCCCC-----------CCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCce
Q 042999 14 TVRKLVVEVVDARDLLPKDGQG-----------SSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEE 81 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g-----------~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~ 81 (1006)
..+.|.|+|++|++|+++|..+ .+||||++.++++. .+|+++++|+||+|||+|.|.+... ..
T Consensus 4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-----~~ 78 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-----RK 78 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-----CE
T ss_pred cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-----CE
Confidence 3578999999999999887443 39999999998765 7999999999999999999998763 58
Q ss_pred EEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCC-ceeEEEEceecCCceeeeEEEEEEEEEEec
Q 042999 82 LEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGD-EGLVYFPLEKKSVFSWIRGEIGLRIYYYDE 148 (1006)
Q Consensus 82 L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~-~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 148 (1006)
|.|+|||+|.+ ++|++||++.+++.++...+. ....|++|.+ +|+|+++++|...
T Consensus 79 L~~~V~d~d~~-----~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~-------~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 79 IELAVFHDAPI-----GYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-------EGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEEECCSS-----SSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-------SCEEEEEEEEEEE
T ss_pred EEEEEEeCCCC-----CCCCEEEEEEEEHHHhcccCCCCccEEEEcCC-------CeEEEEEEEEEec
Confidence 99999999998 789999999999999755433 3468999864 6999999999764
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=157.23 Aligned_cols=117 Identities=26% Similarity=0.367 Sum_probs=100.0
Q ss_pred ccEEEEEEEEecCCCCC---CCCCCCCcEEEEEECC---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 15 VRKLVVEVVDARDLLPK---DGQGSSSPYVIADFDG---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~---~~~g~~dPyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
.+.|.|+|++|++|+.+ +..|.+||||++.+++ ++++|+++++++||+|||+|.|.+.... ...|.|+|||
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~---~~~l~i~V~d 78 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ---ENVLEITLMD 78 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS---CCEEEEEEEE
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCC---CCEEEEEEEE
Confidence 47899999999999984 5568999999999985 7799999999999999999999996543 5689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
++.. ++++||++.+++.++ ..+.....|++|.+. ..|+|+++++..
T Consensus 79 ~d~~------~~~~iG~~~i~l~~l-~~~~~~~~~~~L~~~-----~~g~i~~~le~~ 124 (126)
T 1rlw_A 79 ANYV------MDETLGTATFTVSSM-KVGEKKEVPFIFNQV-----TEMVLEMSLEVA 124 (126)
T ss_dssp CCSS------CCEEEEEEEEEGGGS-CTTCEEEEEEEETTT-----EEEEEEEEEECC
T ss_pred CCCC------CCceeEEEEEEHHHc-cCCCcEEEEEEcCCC-----ceEEEEEEEEeC
Confidence 9988 589999999999996 566667799999763 278888877644
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-17 Score=156.51 Aligned_cols=106 Identities=20% Similarity=0.280 Sum_probs=93.5
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeC----CCcEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLTVGV 689 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i~v 689 (1006)
..+.|.|+|++|++|++++ . .|.+||||++.+. .+..||+++++++||+|||+|.|.+.. ....|.|+|
T Consensus 24 ~~~~L~v~v~~a~~L~~~d---~-~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V 99 (141)
T 2d8k_A 24 QESTLTVKIMKAQELPAKD---F-SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQV 99 (141)
T ss_dssp SSCCEEEEEEEEESCCCCS---S-SSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEE
T ss_pred CCCEEEEEEEEeECCCCCC---C-CCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEE
Confidence 3478999999999999864 4 7899999999993 468899999999999999999998643 357899999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
||+|.++ +|++||.+.|+|.++..+...+.||+|...
T Consensus 100 ~d~d~~~-------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 100 LDYDRFS-------RNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp EECCSSS-------SCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred EECCCCC-------CCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 9999987 899999999999999988778899999764
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-17 Score=163.75 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=101.7
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCC
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMF 696 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~ 696 (1006)
..+.|+|+|++|++|++.+ + .+++||||+|.++++..||+++++++||+|||+|.|.+. +...|.|+|||+|.++
T Consensus 34 ~~~~L~V~V~~A~~L~~~~--~--~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~ 108 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKK--N--WFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLK 108 (173)
T ss_dssp CCEEEEEEEEEEEECCCC------CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSS
T ss_pred CceEEEEEEEEeECCCCcc--c--CCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCC
Confidence 5789999999999998432 2 445999999999999999999999999999999999984 5889999999999987
Q ss_pred cCCCCCCCCceeEEEEEEcccccCC---c--eEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENN---K--VYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~---~--~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
+|++||.+.|+|.++..+ . ....|++|..... +.+..|+|.+.+.|-.
T Consensus 109 -------~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~-~~~~~G~L~v~l~~l~ 161 (173)
T 2nq3_A 109 -------SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKE-PTETIGDLSICLDGLQ 161 (173)
T ss_dssp -------CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSC-TTSEEEEEEEEEESEE
T ss_pred -------CCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCC-CCcccEEEEEEEeeee
Confidence 899999999999998642 1 1257999987532 2334599999888763
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=162.27 Aligned_cols=123 Identities=17% Similarity=0.221 Sum_probs=102.7
Q ss_pred ceeeeEEEEEeeeCCccccccccccCCCCCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC----
Q 042999 578 SYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---- 653 (1006)
Q Consensus 578 ~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---- 653 (1006)
...|+|.+.+.... ..|.|.|+|++|+||++++. . +|.+||||++.++
T Consensus 7 ~~~G~l~~sl~y~~-------------------------~~~~L~V~v~~a~~L~~~d~--~-~~~~dpyv~v~l~~~~~ 58 (148)
T 3fdw_A 7 FVTGRIAFSLKYEQ-------------------------QTQSLVVHVKECHQLAYADE--A-KKRSNPYVKTYLLPDKS 58 (148)
T ss_dssp CCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCSBT--T-TTBCCEEEEEEEETCCS
T ss_pred ccceEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCccc--C-CCCCCeEEEEEEEcCCc
Confidence 34788888876542 35799999999999998652 3 7889999999996
Q ss_pred -CEEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEE
Q 042999 654 -KKWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYP 729 (1006)
Q Consensus 654 -~~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~ 729 (1006)
....||+++++++||+|||+|.|.+... ...|.|+|||+|.++ +|++||.+.|+|.++..+.....||+
T Consensus 59 ~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~-------~~~~iG~~~i~l~~l~~~~~~~~W~~ 131 (148)
T 3fdw_A 59 RQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFG-------RNTFLGEAEIQMDSWKLDKKLDHCLP 131 (148)
T ss_dssp GGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGG-------CEEEEEEEEEEHHHHHHHCCSEEEEE
T ss_pred ccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCc-------CCcEEEEEEEEcccccccCCccceEE
Confidence 3488999999999999999999998763 447999999999987 89999999999999987766789999
Q ss_pred eeeecc
Q 042999 730 LLVLLR 735 (1006)
Q Consensus 730 L~~~~~ 735 (1006)
|..+..
T Consensus 132 L~~~~~ 137 (148)
T 3fdw_A 132 LHGKIS 137 (148)
T ss_dssp CBCC--
T ss_pred CcCccc
Confidence 987543
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-17 Score=158.77 Aligned_cols=105 Identities=25% Similarity=0.310 Sum_probs=93.5
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE---CCEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY---GKKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVF 690 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~---~~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~ 690 (1006)
..+.|.|+|++|+||++++ . +|.+||||++.+ +.+..||+++++++||+|||+|.|.+.. ....|.|+||
T Consensus 40 ~~~~L~V~v~~a~~L~~~d---~-~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~ 115 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALD---M-GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVY 115 (152)
T ss_dssp TTTEEEEEEEEEESCCCCS---T-TSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCcc---C-CCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEE
Confidence 3478999999999998864 4 789999999999 4568899999999999999999999864 3578999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|+|.++ +|++||++.|+|.++..+...+.||+|..
T Consensus 116 d~d~~~-------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 116 DFDRFS-------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp ECCSSS-------CCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred ECCCCC-------CCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 999887 89999999999999988888899999964
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-17 Score=159.58 Aligned_cols=104 Identities=16% Similarity=0.088 Sum_probs=90.9
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC------EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK------KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTV 687 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~------~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i 687 (1006)
..|.|.|+|++|+||+++| . +|++||||++.+.+ ...||+++++|+||+|||+|.|.+.. ....|.|
T Consensus 41 ~~~~L~V~Vi~a~~L~~~d---~-~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~ 116 (155)
T 2z0u_A 41 KNKQFAILIIQLSNLSALL---Q-QQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRV 116 (155)
T ss_dssp TTTEEEEEEEEEECGGGTC---C-SCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEE
T ss_pred CCCEEEEEEEEccCcCCcc---c-CCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEE
Confidence 3579999999999999865 4 88999999999964 27899999999999999999999865 2468999
Q ss_pred EEEECCCCCcCCCCCCCCceeEEEEEEcccccC-CceEeeEEEee
Q 042999 688 GVFDNWRMFADASEERPDYRIGKIRIRVSTLEN-NKVYTTSYPLL 731 (1006)
Q Consensus 688 ~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~ 731 (1006)
+|||+|.++ +|++||.+.|+|.++.. +.....||+|.
T Consensus 117 ~V~d~d~~~-------~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 117 DVCTTDRSH-------LEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEEECTTS-------CEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred EEEECCCCC-------CCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 999999987 89999999999999963 56678999985
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-17 Score=154.36 Aligned_cols=104 Identities=14% Similarity=0.222 Sum_probs=92.0
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-----CCEEEEeecccCCCCCeeccEEEEE-EeC---CCcEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYTWQ-VYD---PCTVLTV 687 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-----~~~~~rT~~~~~~~nP~wne~~~~~-v~~---~~~~l~i 687 (1006)
..|.|.|+|++|+||++ + . +|.+||||++.+ +....||+++++++||+|||+|.|. +.. ....|.|
T Consensus 18 ~~~~L~V~V~~a~~L~~-~---~-~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~ 92 (134)
T 2b3r_A 18 RNGTLFIMVMHIKDLVT-E---D-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQL 92 (134)
T ss_dssp ETTEEEEEEEEEECCCC-T---T-SCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEE
T ss_pred cCCEEEEEEEEeeCCCC-C---C-CCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEE
Confidence 34799999999999985 3 3 788999999999 4568899999999999999999999 653 4578999
Q ss_pred EEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 688 GVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 688 ~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
+|||+|.++ +|++||++.|+|.++..+.....||+|..
T Consensus 93 ~V~d~d~~~-------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 93 SVLSAESLR-------ENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp EEEECCSSS-------CCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred EEEECCCCC-------CCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 999999987 79999999999999998888899999965
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.9e-17 Score=156.85 Aligned_cols=105 Identities=25% Similarity=0.310 Sum_probs=93.6
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE---CCEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY---GKKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVF 690 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~---~~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~ 690 (1006)
..|.|.|+|++|++|++++ . .|.+||||++.+ +.+..||+++++++||+|||+|.|.+.. ....|.|+||
T Consensus 32 ~~~~L~v~v~~a~~L~~~d---~-~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~ 107 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALD---M-GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVY 107 (143)
T ss_dssp TTTEEEEEEEEEECCCCBG---G-GBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCCC---C-CCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEE
Confidence 4579999999999999865 3 778999999999 5668999999999999999999999864 3478999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|+|.++ +|++||.+.|+|.++..+...+.||+|..
T Consensus 108 d~d~~~-------~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 108 DFDRFS-------KHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142 (143)
T ss_dssp ECCSSS-------CCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred eCCCCC-------CCceEEEEEEEHHHccCCCCcceEEECcC
Confidence 999987 89999999999999998888899999953
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.5e-17 Score=153.59 Aligned_cols=103 Identities=22% Similarity=0.349 Sum_probs=85.5
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-----CCEEEEeecccCCCCCeeccEEEEEEeC----CCcEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLTV 687 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-----~~~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i 687 (1006)
..|.|.|+|++|+||++++ . +|++||||++.+ +....||+++++++||+|||+|.|.+.. ....|.|
T Consensus 16 ~~~~L~v~v~~a~~L~~~d---~-~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~ 91 (129)
T 2bwq_A 16 VGHQLIVTILGAKDLPSRE---D-GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEI 91 (129)
T ss_dssp TTTEEEEEEEEEESCCCCT---T-SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEE
T ss_pred CCCEEEEEEEEeeCCCCCC---C-CCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEE
Confidence 3479999999999998864 4 788999999999 4678999999999999999999999643 3468999
Q ss_pred EEEECCCCCcCCCCCCC--CceeEEEEEEcccccCCceEeeEEEee
Q 042999 688 GVFDNWRMFADASEERP--DYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 688 ~v~d~~~~~~~~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
+|||+|.++ + |++||.+.|+|.++.... ...||+|.
T Consensus 92 ~V~d~d~~~-------~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq 129 (129)
T 2bwq_A 92 TLWDQARVR-------EEESEFLGEILIELETALLDD-EPHWYKLQ 129 (129)
T ss_dssp EEEEC--------------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred EEEECCcCc-------CcCCceeEEEEEEccccCCCc-CCccEECc
Confidence 999999876 5 999999999999987654 68999983
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.69 E-value=9.2e-17 Score=157.26 Aligned_cols=106 Identities=26% Similarity=0.365 Sum_probs=91.5
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-----CCEEEEeecccCCCCCeeccEEEEEE--eCCCcEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYTWQV--YDPCTVLTVGV 689 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-----~~~~~rT~~~~~~~nP~wne~~~~~v--~~~~~~l~i~v 689 (1006)
..|.|.|+|++|+||++++ .|.+||||++.+ .....||+++++++||+|||+|.|.+ .+....|.|+|
T Consensus 25 ~~~~L~V~v~~a~~L~~~d-----~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V 99 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISKQ-----PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTV 99 (153)
T ss_dssp SSSEEEEEEEEEESCCCCS-----SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCC-----CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEE
Confidence 4579999999999999865 468999999998 34578999999999999999999998 44556799999
Q ss_pred EECCCCCcCCCCCCC-CceeEEEEEEcccccC-CceEeeEEEeeeec
Q 042999 690 FDNWRMFADASEERP-DYRIGKIRIRVSTLEN-NKVYTTSYPLLVLL 734 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~ 734 (1006)
||+|.++ + |++||.+.|+|.++.. +.....||+|....
T Consensus 100 ~d~d~~~-------~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 100 WNRASQS-------RQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH 139 (153)
T ss_dssp EECCSSG-------GGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred EeCCCCC-------CCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence 9999876 5 8999999999999985 67778999997743
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.3e-17 Score=155.13 Aligned_cols=120 Identities=23% Similarity=0.344 Sum_probs=100.6
Q ss_pred ceeeeEEEEEeeeCCccccccccccCCCCCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-----
Q 042999 578 SYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY----- 652 (1006)
Q Consensus 578 ~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~----- 652 (1006)
...|+|.+.+.... ..|.|.|+|++|++|++++ . +|.+||||++.+
T Consensus 5 ~~~G~i~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d---~-~g~~dpyv~v~~~~~~~ 55 (141)
T 1v27_A 5 SSGGQLSIKLWFDK-------------------------VGHQLIVTILGAKDLPSRE---D-GRPRNPYVKIYFLPDRS 55 (141)
T ss_dssp CCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCS---S-SCCCCEEEECCCSSCCS
T ss_pred CcccEEEEEEEEeC-------------------------CCCEEEEEEEEccCCCCcC---C-CCCCCCEEEEEEecCCC
Confidence 44799998876542 3468999999999998865 4 788999999999
Q ss_pred CCEEEEeecccCCCCCeeccEEEEEEeC----CCcEEEEEEEECCCCCcCCCCCCC--CceeEEEEEEcccccCCceEee
Q 042999 653 GKKWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLTVGVFDNWRMFADASEERP--DYRIGKIRIRVSTLENNKVYTT 726 (1006)
Q Consensus 653 ~~~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i~v~d~~~~~~~~~~~~~--d~~lG~~~i~l~~l~~~~~~~~ 726 (1006)
+.+..||+++++++||+|||+|.|.+.. ....|.|+|||+|.++ + |++||.+.|+|.++.... ...
T Consensus 56 ~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~-------~~~~~~lG~~~i~l~~l~~~~-~~~ 127 (141)
T 1v27_A 56 DKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVR-------EEESEFLGEILIELETALLDD-EPH 127 (141)
T ss_dssp SSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSS-------SCCBCCCEEEEEEGGGCCCSS-EEE
T ss_pred CCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCc-------CCCCceEEEEEEEccccCCCC-CCc
Confidence 4678899999999999999999999543 3468999999999876 5 899999999999987654 689
Q ss_pred EEEeeeec
Q 042999 727 SYPLLVLL 734 (1006)
Q Consensus 727 ~~~L~~~~ 734 (1006)
||+|....
T Consensus 128 W~~L~~~~ 135 (141)
T 1v27_A 128 WYKLQTHD 135 (141)
T ss_dssp EEECBCCS
T ss_pred eEECcccc
Confidence 99997643
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-16 Score=151.35 Aligned_cols=106 Identities=23% Similarity=0.277 Sum_probs=89.4
Q ss_pred CcEEEEEEEeeccCCccCccCCCCC-CCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEE-EeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGK-GSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQ-VYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~-g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~-v~~---~~~~l~i~ 688 (1006)
..|.|.|+|++|+||++++. . |.+||||++.++ .+..||+++++++||+|||+|.|. +.. ....|.|+
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~----~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~ 95 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDE----QSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFT 95 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBT----TTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCCC----CCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEE
Confidence 34789999999999998653 4 789999999995 478999999999999999999996 543 23589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCc-eEeeEEEeeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNK-VYTTSYPLLVL 733 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~-~~~~~~~L~~~ 733 (1006)
|||+|.++ +|++||.+.|+|.++..+. ....|++|...
T Consensus 96 V~d~d~~~-------~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~ 134 (138)
T 1ugk_A 96 ILSFDRFS-------RDDIIGEVLIPLSGIELSEGKMLMNREIISG 134 (138)
T ss_dssp EEEECSSC-------CCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred EEECCCCC-------CCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence 99999887 8999999999999998754 33567988654
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.8e-17 Score=158.05 Aligned_cols=104 Identities=25% Similarity=0.360 Sum_probs=90.3
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE--------------EEEeecccCCCCCeeccEEEEE-EeC---
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK--------------WVRTRTITDCFDPRWNEQYTWQ-VYD--- 680 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~--------------~~rT~~~~~~~nP~wne~~~~~-v~~--- 680 (1006)
|.|.|+|++|+||++++ . +|.+||||++.+++. ..||+++++++||+|||.|.|. +..
T Consensus 18 ~~L~V~v~~a~~L~~~d---~-~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l 93 (142)
T 1rh8_A 18 GNLIIHILQARNLVPRD---N-NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQL 93 (142)
T ss_dssp TEEEEEEEEEESCCCCS---S-SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHH
T ss_pred CEEEEEEEEecCCCCCC---C-CCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHc
Confidence 58999999999999865 4 789999999999752 4789999999999999999997 432
Q ss_pred CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 681 PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 681 ~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
....|.|+|||+|.++ +|++||.+.|+|.++..+.....||+|...
T Consensus 94 ~~~~l~i~V~d~d~~~-------~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 139 (142)
T 1rh8_A 94 MKKTLEVTVWDYDRFS-------SNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TTCEEEEEEEEECSSS-------CEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred cCCEEEEEEEECCCCC-------CCceEEEEEEeccccccCCCCCeEEECCcc
Confidence 4568999999999987 899999999999999876666899999653
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=150.75 Aligned_cols=109 Identities=24% Similarity=0.433 Sum_probs=91.4
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEE-----CCeEEEeeCcCCCCCCeeeeEEEEE-eeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEPLEFI-VSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~-----~~~~~kT~~~~~t~nP~wne~f~f~-~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|+|++|++|+. +..|.+||||++++ ...+++|+++++++||+|||+|.|. +... ++....|.|+||
T Consensus 18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~-~l~~~~L~~~V~ 95 (134)
T 2b3r_A 18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE-TLRQRELQLSVL 95 (134)
T ss_dssp ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHH-HHTTCEEEEEEE
T ss_pred cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHH-HhCcCEEEEEEE
Confidence 35789999999999987 76889999999999 3467999999999999999999999 6542 111568999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
|++.+ +++++||++.++++++ ..+.....|++|.+.+
T Consensus 96 d~d~~-----~~~~~lG~~~i~l~~l-~~~~~~~~W~~L~~~~ 132 (134)
T 2b3r_A 96 SAESL-----RENFFLGGITLPLKDF-NLSKETVKWYQLTAAT 132 (134)
T ss_dssp ECCSS-----SCCEEEEEEEEEGGGS-CTTSCEEEEEECBC--
T ss_pred ECCCC-----CCCcEEEEEEEEhhhc-cCCCCcceeEECCCcc
Confidence 99998 7899999999999996 4556667899998643
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.8e-16 Score=152.22 Aligned_cols=121 Identities=22% Similarity=0.239 Sum_probs=99.8
Q ss_pred cceeeeEEEEEeeeCCccccccccccCCCCCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC--
Q 042999 577 RSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-- 654 (1006)
Q Consensus 577 ~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-- 654 (1006)
....|+|++.+.... ..|.|.|+|++|+||++++ . +|.+||||++.+++
T Consensus 8 ~~~~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~d---~-~g~~dpyv~v~l~~~~ 58 (159)
T 1tjx_A 8 LEKLGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKKMD---V-GGLSDPYVKIHLMQNG 58 (159)
T ss_dssp GGCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCS---T-TSCCCEEEEEEEEETT
T ss_pred cCcCCeEEEEEEEcC-------------------------CCCEEEEEEEEeeCCCCcc---C-CCCCCeEEEEEEEeCC
Confidence 344799998875432 3579999999999999865 4 78999999999952
Q ss_pred ---EEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccc----------
Q 042999 655 ---KWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTL---------- 718 (1006)
Q Consensus 655 ---~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l---------- 718 (1006)
...||+++++++||+|||+|.|.+... ...|.|+|||+|.++ +|++||.+.|++..+
T Consensus 59 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~-------~~~~iG~~~i~l~~~~~~~~~w~~l 131 (159)
T 1tjx_A 59 KRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG-------KNDAIGKVFVGYNSTGAELRHWSDM 131 (159)
T ss_dssp EEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS-------CCEEEEEEEEETTCCHHHHHHHHHH
T ss_pred ceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCC-------CCceEEEEEECCCCCCcHHHHHHHH
Confidence 467999999999999999999998653 358999999999987 899999999999853
Q ss_pred --cCCceEeeEEEeeee
Q 042999 719 --ENNKVYTTSYPLLVL 733 (1006)
Q Consensus 719 --~~~~~~~~~~~L~~~ 733 (1006)
..+.....||+|...
T Consensus 132 ~~~~~~~~~~W~~L~~~ 148 (159)
T 1tjx_A 132 LANPRRPIAQWHTLQVE 148 (159)
T ss_dssp HHSTTCCEEEEEECBCH
T ss_pred HHCCCCeeeeEEECcCc
Confidence 234567899999763
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-16 Score=148.64 Aligned_cols=102 Identities=16% Similarity=0.087 Sum_probs=87.8
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---C-EEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG---K-KWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVGV 689 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~---~-~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~v 689 (1006)
..+.|.|+|++|++ + |. +|.+||||++.+. + ...||+++++|+||+|||+|.|.+... ...|.|+|
T Consensus 24 ~~~~L~V~v~~a~~---~---d~-~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V 96 (138)
T 1wfm_A 24 QKAELFVTRLEAVT---S---NH-DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTL 96 (138)
T ss_dssp TTTEEEEEEEEEEC---C---CC-SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEE
T ss_pred CCCEEEEEEEEEEc---C---CC-CCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEE
Confidence 34689999999993 2 45 8899999999993 2 368999999999999999999998653 46899999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
||+|.++ +|++||.+.|+|.++..+.....||+|..
T Consensus 97 ~d~d~~~-------~dd~lG~~~i~l~~l~~~~~~~~W~~L~~ 132 (138)
T 1wfm_A 97 RTCDRFS-------RHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp EECCSSC-------TTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred EECCCCC-------CCcEEEEEEEEcccccCcccccceeeCcC
Confidence 9999987 89999999999999976666689999975
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=152.73 Aligned_cols=121 Identities=20% Similarity=0.242 Sum_probs=99.6
Q ss_pred cceeeeEEEEEeeeCCccccccccccCCCCCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC---
Q 042999 577 RSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--- 653 (1006)
Q Consensus 577 ~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--- 653 (1006)
....|+|++.+.... ..|.|.|+|++|+||++++ . .| +||||++.+.
T Consensus 7 ~~~~G~l~~~l~y~~-------------------------~~~~L~v~v~~a~~L~~~d---~-~g-~dpyv~v~l~~~~ 56 (142)
T 2dmg_A 7 GSPLGQIQLTIRHSS-------------------------QRNKLIVVVHACRNLIAFS---E-DG-SDPYVRMYLLPDK 56 (142)
T ss_dssp SCSSCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCSS---T-TC-CCEEEEEEEESCC
T ss_pred CCCcceEEEEEEEeC-------------------------CCCEEEEEEEEeECCCCCC---C-CC-CCeeEEEEEEcCC
Confidence 344699988875432 3478999999999999865 4 77 9999999993
Q ss_pred --CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEEECCCCCcCCCCCCC-CceeEEEEEEcccccCCceEeeE
Q 042999 654 --KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVFDNWRMFADASEERP-DYRIGKIRIRVSTLENNKVYTTS 727 (1006)
Q Consensus 654 --~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~d~~~~~~~~~~~~~-d~~lG~~~i~l~~l~~~~~~~~~ 727 (1006)
....||+++++++||+|||+|.|.+.. ....|.|+|||+|.++ .+ |++||.+.|+|.++..+.....|
T Consensus 57 ~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~------~~~~~~iG~~~i~l~~~~~~~~~~~W 130 (142)
T 2dmg_A 57 RRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFL------SKDKGLLGKVLVALASEELAKGWTQW 130 (142)
T ss_dssp CSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSS------CCSCCCCEEEEEECCCSTTTTCBCCB
T ss_pred CCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCcc------ccCCcEEEEEEEecccccccccccce
Confidence 267899999999999999999999854 2358999999999875 12 57999999999999877677899
Q ss_pred EEeeee
Q 042999 728 YPLLVL 733 (1006)
Q Consensus 728 ~~L~~~ 733 (1006)
|+|...
T Consensus 131 ~~L~~~ 136 (142)
T 2dmg_A 131 YDLTED 136 (142)
T ss_dssp CCCBCS
T ss_pred eeccCC
Confidence 999764
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=150.24 Aligned_cols=106 Identities=25% Similarity=0.463 Sum_probs=86.8
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEE-----CCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~-----~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+.++..|.+||||++++ +..+++|+++++++||+|||+|.|.+..........|.|+|||+
T Consensus 17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~ 96 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 96 (129)
T ss_dssp TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence 5789999999999999998999999999999 35789999999999999999999995432222256899999999
Q ss_pred CCCCCCCCCC--CceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 90 KRYCNGSGRK--NHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 90 d~~~~~~~~~--d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
+.. ++ +++||++.+++.++...+ ..+||+|+
T Consensus 97 d~~-----~~~~~~~lG~~~i~l~~l~~~~--~~~W~~Lq 129 (129)
T 2bwq_A 97 ARV-----REEESEFLGEILIELETALLDD--EPHWYKLQ 129 (129)
T ss_dssp ------------CEEEEEEEEEGGGCCCSS--CEEEEECC
T ss_pred CcC-----cCcCCceeEEEEEEccccCCCc--CCccEECc
Confidence 998 55 999999999999975433 66899984
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=153.44 Aligned_cols=123 Identities=17% Similarity=0.147 Sum_probs=101.1
Q ss_pred ceeeeEEEEEeeeCCccccccccccCCCCCccccccCCCCcEEEEEEEeeccCCccC-ccC---CCCCCCCCeEEEEEEC
Q 042999 578 SYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPM-KTK---NGGKGSTDAYCVAKYG 653 (1006)
Q Consensus 578 ~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~~~~~g~L~v~v~~a~~L~~~-~~~---d~~~g~sdpyv~v~~~ 653 (1006)
...|+|++.+.... ..|.|.|+|++|+||++. +.. +. .|.+||||++.++
T Consensus 10 ~~~G~l~~~l~y~~-------------------------~~~~L~V~v~~a~~L~~~~d~~g~~~~-~~~~dpyv~v~l~ 63 (147)
T 2enp_A 10 YQLGMLHFSTQYDL-------------------------LHNHLTVRVIEARDLPPPISHDGSRQD-MAHSNPYVKICLL 63 (147)
T ss_dssp CCCCEEEEEEEEET-------------------------TTTEEEEEEEEEECCCCSCSSCCSSCT-TCCCCCEEEEEEE
T ss_pred CcceEEEEEEEEcC-------------------------CCCEEEEEEEEEeCCCCcccccccccc-CCCCCcEEEEEEE
Confidence 44799988876542 357999999999999983 421 22 4689999999995
Q ss_pred ---CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeE
Q 042999 654 ---KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTS 727 (1006)
Q Consensus 654 ---~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~ 727 (1006)
.+..||+++++++||+|||+|.|.+.. ....|.|+|||+|.++ +|++||.+.|+|.++..+.....|
T Consensus 64 ~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~-------~~~~iG~~~i~l~~l~~~~~~~~w 136 (147)
T 2enp_A 64 PDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFS-------RHCVIGKVSVPLCEVDLVKGGHWW 136 (147)
T ss_dssp TCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTC-------CSCCCEEEEEETTTSCTTTCCCEE
T ss_pred eCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCc-------CCcEEEEEEEechhcCCCCCccEE
Confidence 467899999999999999999999864 2358999999999887 789999999999999876666789
Q ss_pred EEeeee
Q 042999 728 YPLLVL 733 (1006)
Q Consensus 728 ~~L~~~ 733 (1006)
|+|...
T Consensus 137 ~~L~~~ 142 (147)
T 2enp_A 137 KALIPS 142 (147)
T ss_dssp ECCBCC
T ss_pred EEeecC
Confidence 999754
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-17 Score=158.36 Aligned_cols=107 Identities=16% Similarity=0.179 Sum_probs=92.1
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC------eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG------QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
.+.|.|+|++|+||+++|..|.+||||++++.. .++||+++++|+||+|||+|.|.+.... +....|.|+|||
T Consensus 42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~-l~~~~L~~~V~d 120 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPA-LHQKTLRVDVCT 120 (155)
T ss_dssp TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHH-HHHCEEEEEEEE
T ss_pred CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHH-hCcCEEEEEEEE
Confidence 578999999999999999999999999999964 2699999999999999999999976521 114579999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
+|.+ +++++||++.++++++...+....+|++|.
T Consensus 121 ~d~~-----~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 121 TDRS-----HLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp ECTT-----SCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred CCCC-----CCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 9999 799999999999999643355667899985
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=151.64 Aligned_cols=104 Identities=25% Similarity=0.373 Sum_probs=91.0
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEE-EeCC---CcEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQ-VYDP---CTVLTV 687 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~-v~~~---~~~l~i 687 (1006)
..|.|.|+|++|+||++++ . +|.+||||++.+++ ...||+++++++||+|||.|.|. +... ...|.|
T Consensus 27 ~~~~L~V~v~~a~~L~~~d---~-~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i 102 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMD---S-NGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRI 102 (142)
T ss_dssp GGTEEEEEEEEEESCCCCC---T-TSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEE
T ss_pred CCCEEEEEEEEecCCCCCC---C-CCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEE
Confidence 3579999999999999864 4 78999999999965 78999999999999999999998 4332 368999
Q ss_pred EEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 688 GVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 688 ~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
+|||+|.++ +|++||.+.|+|.++..+.....|++|.
T Consensus 103 ~V~d~d~~~-------~d~~iG~~~i~l~~l~~~~~~~~~~~L~ 139 (142)
T 2chd_A 103 SVCDEDKFG-------HNEFIGETRFSLKKLKANQRKNFNICLE 139 (142)
T ss_dssp EEEEECTTS-------CEEEEEEEEEEGGGCCTTCCEEEEEECB
T ss_pred EEEECCCCC-------CCcEEEEEEEEHHHcCCCCccEEEEecc
Confidence 999999887 7899999999999999888777888884
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.4e-16 Score=149.13 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=85.1
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeCCC---cEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYDPC---TVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~~~---~~l~i~ 688 (1006)
..|.|.|+|++|+||++++ . +|.+||||++.+++ ...+|+++++++||.|||+|.|.+.... ..|.|+
T Consensus 14 ~~~~L~v~v~~a~~L~~~d---~-~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~ 89 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAMD---I-GGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIIT 89 (138)
T ss_dssp TTTEEEEEEEEEESCCCCB---T-TTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEE
T ss_pred CCCeEEEEEEEeeCCCCcC---C-CCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEE
Confidence 3579999999999999865 4 78999999999963 4789999999999999999999987644 589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|||+|.++ +|++||.+.|++.++..+. ++|++|.
T Consensus 90 V~d~~~~~-------~~~~lG~~~i~l~~~~~~~--~~W~~l~ 123 (138)
T 3n5a_A 90 VMDKDKLS-------RNDVIGKIYLSWKSGPGEV--KHWKDMI 123 (138)
T ss_dssp EEECCSSS-------CCEEEEEEEESSSSCHHHH--HHHHHHH
T ss_pred EEECCCCC-------CCcEEEEEEEccccCChHH--HHHHHHH
Confidence 99999887 8999999999999764322 4455443
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-16 Score=153.44 Aligned_cols=103 Identities=24% Similarity=0.375 Sum_probs=91.2
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC-----CEEEEeecccCCCCCeeccEEEEEEeCC--CcEEEEEEEE
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG-----KKWVRTRTITDCFDPRWNEQYTWQVYDP--CTVLTVGVFD 691 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~-----~~~~rT~~~~~~~nP~wne~~~~~v~~~--~~~l~i~v~d 691 (1006)
|.|.|+|++|++|++++ . .|.+||||++.++ ....||+++++++||+|||+|.|.+... ...|.|+|||
T Consensus 31 ~~L~v~v~~a~~L~~~d---~-~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d 106 (149)
T 1a25_A 31 EVLIVVVRDAKNLVPMD---P-NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWD 106 (149)
T ss_dssp SEEEEEEEEEESCCCCS---T-TSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEE
T ss_pred CEEEEEEEEeeCCCCCC---C-CCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEE
Confidence 57999999999999865 4 7889999999996 4688999999999999999999999763 4689999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 692 NWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 692 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
+|.++ +|++||.+.|+|.++..+ ..+.||+|...
T Consensus 107 ~d~~~-------~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~ 140 (149)
T 1a25_A 107 WDLTS-------RNDFMGSLSFGISELQKA-GVDGWFKLLSQ 140 (149)
T ss_dssp CCSSS-------CCEEEEEEEEEHHHHTTC-CEEEEEECBCH
T ss_pred CCCCC-------CCCEEEEEEEEHHHhCcC-ccCCeEEccCC
Confidence 99987 899999999999999876 46899999764
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-16 Score=158.49 Aligned_cols=106 Identities=23% Similarity=0.262 Sum_probs=92.6
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEE-EC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVF-DN 692 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~-d~ 692 (1006)
|.|.|+|++|+||+++|. . +|.+||||++.+++ ...||+++++|+||+|||+|.|.+......|.|+|| |+
T Consensus 30 ~~L~V~v~~a~~L~~~d~--~-~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~ 106 (171)
T 2q3x_A 30 GQLEVEVIRARSLTQKPG--S-KSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDY 106 (171)
T ss_dssp TEEEEEEEEEESCCCCC------CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEEC
T ss_pred CEEEEEEEEeeCCCCCCc--C-CCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcC
Confidence 689999999999998652 2 57899999999852 378999999999999999999999777789999999 99
Q ss_pred CCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeec
Q 042999 693 WRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLL 734 (1006)
Q Consensus 693 ~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 734 (1006)
|.++ +|++||.+.|+|.++..+.....||+|....
T Consensus 107 d~~~-------~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~~ 141 (171)
T 2q3x_A 107 GRMD-------HKCFMGVAQILLEELDLSSMVIGWYKLFPPS 141 (171)
T ss_dssp STTC-------SSEEEEEEEECGGGSCTTSCEEEEEECBCGG
T ss_pred CCCC-------CCCEEEEEEEEHHHcccCCCcceeEECCCcc
Confidence 9887 8999999999999998777889999997643
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=151.77 Aligned_cols=110 Identities=24% Similarity=0.326 Sum_probs=93.7
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
.+.|.|+|++|++|+.++..|.+||||++++. .++++|+++++++||+|||+|.|.+..........|.|+|||++.
T Consensus 25 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~ 104 (141)
T 2d8k_A 25 ESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDR 104 (141)
T ss_dssp SCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCS
T ss_pred CCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCC
Confidence 56899999999999999988999999999994 467999999999999999999998533211124689999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
+ +++++||++.+++.++ ..+.....|++|.+.+
T Consensus 105 ~-----~~~~~iG~~~i~l~~l-~~~~~~~~W~~L~~~~ 137 (141)
T 2d8k_A 105 F-----SRNDPIGEVSIPLNKV-DLTQMQTFWKDLKPSG 137 (141)
T ss_dssp S-----SSCEEEEEEEEETTTS-CTTSCEEEEECCEECC
T ss_pred C-----CCCcEEEEEEEEhhhh-cCCCCccEEEECcCCC
Confidence 8 7899999999999996 4455667899999765
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=152.13 Aligned_cols=92 Identities=20% Similarity=0.276 Sum_probs=81.5
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~ 688 (1006)
..|.|.|+|++|+||++++ . +|.+||||++.+++ ...||+++++++||+|||+|.|.+... ...|.|+
T Consensus 35 ~~~~L~V~v~~a~~L~~~d---~-~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~ 110 (166)
T 2cm5_A 35 QQGGLIVGIIRCVHLAAMD---A-NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDIS 110 (166)
T ss_dssp TTTEEEEEEEEEESCCCCS---T-TSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEE
T ss_pred CCCEEEEEEEEeECCCCcc---C-CCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEE
Confidence 3579999999999999865 4 78999999999965 688999999999999999999998652 4589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEccccc
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLE 719 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~ 719 (1006)
|||+|.++ +|++||.+.|+|.++.
T Consensus 111 V~d~d~~~-------~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 111 VWDYDIGK-------SNDYIGGCQLGISAKG 134 (166)
T ss_dssp EEECCSSS-------CCEEEEEEEEETTCCH
T ss_pred EEECCCCC-------CCcEEEeEEEecccCC
Confidence 99999987 8999999999999863
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-16 Score=152.75 Aligned_cols=111 Identities=24% Similarity=0.418 Sum_probs=93.1
Q ss_pred ccEEEEEEEEecCCCCCC-CCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 15 VRKLVVEVVDARDLLPKD-GQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
.+.|.|+|++|++|+.++ ..|.+||||++.+. ..+++|+++++++||+|||+|.|.+.... .....|.|+|||
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~~~~~L~~~V~d 100 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESL-LAQRTLQFSVWH 100 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTT-GGGCEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhH-hCceEEEEEEEE
Confidence 578999999999999888 57899999999996 34799999999999999999999987642 225679999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCc
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVF 132 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~ 132 (1006)
++.+ +++++||++.+++.++ ..+....+|++|.+++..
T Consensus 101 ~d~~-----~~~~~iG~~~i~l~~l-~~~~~~~~W~~L~~~~~~ 138 (148)
T 3fdw_A 101 HGRF-----GRNTFLGEAEIQMDSW-KLDKKLDHCLPLHGKISA 138 (148)
T ss_dssp ECGG-----GCEEEEEEEEEEHHHH-HHHCCSEEEEECBCC---
T ss_pred CCCC-----cCCcEEEEEEEEcccc-cccCCccceEECcCcccc
Confidence 9998 7899999999999996 444455689999876543
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.9e-16 Score=150.89 Aligned_cols=107 Identities=26% Similarity=0.391 Sum_probs=92.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
.+.|.|+|++|++|+.++..|.+||||++++. .++++|+++++++||+|||+|.|.+.... +....|.|+|||++.
T Consensus 41 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~L~i~V~d~d~ 119 (152)
T 1rsy_A 41 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE-LGGKTLVMAVYDFDR 119 (152)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHH-HTTCEEEEEEEECCS
T ss_pred CCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHH-cCCCEEEEEEEECCC
Confidence 46899999999999999988999999999993 56799999999999999999999876421 114689999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
+ +++++||++.+++.++ ..+....+|++|.+
T Consensus 120 ~-----~~~~~iG~~~i~l~~l-~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 120 F-----SKHDIIGEFKVPMNTV-DFGHVTEEWRDLQS 150 (152)
T ss_dssp S-----SCCEEEEEEEEEGGGC-CCSSCEEEEEECBC
T ss_pred C-----CCCcEEEEEEEEchhc-cCCCCcceEEECCC
Confidence 8 7899999999999996 55666779999975
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-15 Score=138.55 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=106.0
Q ss_pred CCCCcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcC-CCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 10 QQQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKF-RDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 10 ~~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
-|.+..+.|+|+|.+|.+|+ |++|||+++.+.+.+++|++++ +++||+|||.|+|++..+. ..+..|.|.|||
T Consensus 15 ~~~~~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~l-d~~e~L~v~V~d 88 (144)
T 3l9b_A 15 VPRGSHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSI-DRNEVLEIQIFN 88 (144)
T ss_dssp ----CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCC-CTTCEEEEEEEE
T ss_pred ccCCCcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCC-CCCCEEEEEEEE
Confidence 36778899999999999997 5899999999999999999998 6999999999999998854 348899999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
++++ +++++||++.++|+++...+ ....+.+|.+.+... ..++|.+++.|.+..
T Consensus 89 ~~~v-----~~nrlIG~~~i~Lq~lv~~~-~l~l~~~LvD~n~~~-~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 89 YSKV-----FSNKLIGTFRMVLQKVVEEN-RVEVSDTLIDDNNAI-IKTSLSMEVRYQAAD 142 (144)
T ss_dssp ECTT-----SCCEEEEEEEEESHHHHHHS-EEEEEEEEECTTSCE-EEEEEEEEEEEEETT
T ss_pred Cccc-----cCCCEEEEEEEEhHHhccCC-eEEEeecccCCCCCc-cccEEEEEEEecCCC
Confidence 9999 79999999999999976554 333466777655433 458999999999865
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-16 Score=150.35 Aligned_cols=108 Identities=26% Similarity=0.401 Sum_probs=93.8
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEE---CCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADF---DGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~---~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..+.|.|+|++|++|+.++..+.+||||++++ +.++++|+++++++||+|||+|.|.+.... +....|.|+|||++
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~L~i~V~d~d 110 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE-LGGKTLVMAVYDFD 110 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHH-HTTCEEEEEEEECC
T ss_pred CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhh-cCCCEEEEEEEeCC
Confidence 45789999999999999998899999999999 456799999999999999999999976531 11468999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
.+ +++++||++.+++.++ ..+.....|++|++
T Consensus 111 ~~-----~~~~~iG~~~i~l~~l-~~~~~~~~W~~L~~ 142 (143)
T 3f04_A 111 RF-----SKHDIIGEFKVPMNTV-DFGHVTEEWRDLQS 142 (143)
T ss_dssp SS-----SCCEEEEEEEEEGGGC-CTTSCEEEEEECBC
T ss_pred CC-----CCCceEEEEEEEHHHc-cCCCCcceEEECcC
Confidence 98 7899999999999996 56666779999974
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=146.37 Aligned_cols=111 Identities=19% Similarity=0.303 Sum_probs=92.5
Q ss_pred cccEEEEEEEEecCCCCCCCC-CCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEE-eeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQ-GSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFI-VSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~-g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~-~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|++|+.++.. |.+||||++++. .++++|+++++++||+|||+|.|. +... ......|.|+|||
T Consensus 20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~-~~~~~~l~i~V~d 98 (138)
T 1ugk_A 20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT-QIQELALHFTILS 98 (138)
T ss_dssp GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCST-TGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHH-HhccCEEEEEEEE
Confidence 357899999999999999984 899999999995 378999999999999999999996 5542 2235689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
++.+ +++++||++.+++.++.........|++|.++.
T Consensus 99 ~d~~-----~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~ 135 (138)
T 1ugk_A 99 FDRF-----SRDDIIGEVLIPLSGIELSEGKMLMNREIISGP 135 (138)
T ss_dssp ECSS-----CCCCCCEEEEEECTTCCCTTCCEEEEEECBSSS
T ss_pred CCCC-----CCCcEEEEEEEehhHccCCCCcchhhhhhhcCC
Confidence 9998 789999999999999744334445678998654
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.3e-16 Score=145.52 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=87.6
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeeccc-CCCCCeeccEEEEEEeCCCcEEEEEEEECCCCC
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTIT-DCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMF 696 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~-~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~ 696 (1006)
.|.|.|+|++|++|++ .|++||||++. .+..+|++++ +++||+|||+|.|.+.+....|.|+|||+| ++
T Consensus 4 ~~~L~V~V~~A~~l~~-------~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~ 73 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA-------QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI 73 (131)
T ss_dssp CEEEEEEEEEEECSSC-------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SS
T ss_pred ceEEEEEEEEeECCCC-------CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CC
Confidence 5899999999998843 67899999999 3345677666 699999999999999988889999999999 76
Q ss_pred cCCCCCCCCceeEEEEEEcccccCCce--EeeEEEeeee----c--cCCc--ccccEEEEEEEEe
Q 042999 697 ADASEERPDYRIGKIRIRVSTLENNKV--YTTSYPLLVL----L--RTGL--KKMGEIELAVRFV 751 (1006)
Q Consensus 697 ~~~~~~~~d~~lG~~~i~l~~l~~~~~--~~~~~~L~~~----~--~~g~--~~~G~l~l~~~~~ 751 (1006)
+|++||++.|+|.++..... ...|+++... . ..|. ...+.+.+.++|.
T Consensus 74 -------~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~~ 131 (131)
T 2cjt_A 74 -------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE 131 (131)
T ss_dssp -------CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEEC
T ss_pred -------CCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEeC
Confidence 79999999999999864321 1145544431 1 1121 1236688888873
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-16 Score=150.00 Aligned_cols=109 Identities=24% Similarity=0.454 Sum_probs=92.5
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEE-----CCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~-----~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+.++..|.+||||++++ +.++++|+++++++||+|||+|.|.+..........|.|+|||+
T Consensus 20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~ 99 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 99 (141)
T ss_dssp TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence 4789999999999999998999999999999 35679999999999999999999995432322357899999999
Q ss_pred CCCCCCCCCC--CceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 90 KRYCNGSGRK--NHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 90 d~~~~~~~~~--d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
+.+ ++ +++||++.+++.++...+ ..+||+|.+..
T Consensus 100 d~~-----~~~~~~~lG~~~i~l~~l~~~~--~~~W~~L~~~~ 135 (141)
T 1v27_A 100 ARV-----REEESEFLGEILIELETALLDD--EPHWYKLQTHD 135 (141)
T ss_dssp CSS-----SSCCBCCCEEEEEEGGGCCCSS--EEEEEECBCCS
T ss_pred CCC-----cCCCCceEEEEEEEccccCCCC--CCceEECcccc
Confidence 998 55 999999999999975432 67899998654
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=148.17 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=90.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+.++ .|.+||||++.+. ..+++|+++++++||+|||+|.|.+.... . ...|.|+|||+
T Consensus 26 ~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~-~~~L~i~V~d~ 102 (153)
T 3fbk_A 26 DRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEED-D-QKRLLVTVWNR 102 (153)
T ss_dssp SSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGG-T-TSEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHH-h-CCEEEEEEEeC
Confidence 578999999999999998 6899999999993 35699999999999999999999985422 2 34699999999
Q ss_pred CCCCCCCCCC-CceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 90 KRYCNGSGRK-NHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 90 d~~~~~~~~~-d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
+.+ ++ |++||++.+++.++...+.....|++|.+..
T Consensus 103 d~~-----~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 103 ASQ-----SRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH 139 (153)
T ss_dssp CSS-----GGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred CCC-----CCCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence 998 56 8999999999999754456677899998644
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=148.00 Aligned_cols=106 Identities=28% Similarity=0.460 Sum_probs=91.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+.++..|.+||||++++. ..+++|+++++++||+|||+|.|.+.... . ...|.|+|||+
T Consensus 30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~-~~~L~i~V~d~ 107 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD-K-DRRLSVEIWDW 107 (149)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG-G-GCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEecccc-C-CCEEEEEEEEC
Confidence 36799999999999999988999999999996 46799999999999999999999987632 1 45899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
+.+ +++++||++.+++.++... ....||+|.+.
T Consensus 108 d~~-----~~~~~iG~~~i~l~~l~~~--~~~~W~~L~~~ 140 (149)
T 1a25_A 108 DLT-----SRNDFMGSLSFGISELQKA--GVDGWFKLLSQ 140 (149)
T ss_dssp CSS-----SCCEEEEEEEEEHHHHTTC--CEEEEEECBCH
T ss_pred CCC-----CCCCEEEEEEEEHHHhCcC--ccCCeEEccCC
Confidence 998 7899999999999997432 36689999864
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-15 Score=146.75 Aligned_cols=103 Identities=17% Similarity=0.122 Sum_probs=81.3
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE--CCE---EEEeecccCCCCCeeccEEEEEEeCC---CcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY--GKK---WVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~--~~~---~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~ 688 (1006)
..|.|.|+|++|+||++++ . +|++||||++.+ ++. ..||+++++++||+|||+|.|.+... ...|.|+
T Consensus 28 ~~~~L~v~v~~a~~L~~~d---~-~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~ 103 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSD---V-SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFL 103 (153)
T ss_dssp TTTEEEEEEEEEESCC----------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEE
T ss_pred CCCEEEEEEEEeECCCCcC---C-CCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEE
Confidence 3479999999999999864 4 788999999999 443 67999999999999999999998764 3689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||+|.++ +|++||.+.|++... +..+++||+|..
T Consensus 104 V~d~d~~~-------~~~~lG~~~i~l~~~--~~~~~~W~~l~~ 138 (153)
T 1w15_A 104 VLDSERGS-------RNEVIGRLVLGATAE--GSGGGHWKEICD 138 (153)
T ss_dssp EEECCTTS-------CCEEEEEEEESTTCC--SHHHHHHHHHHH
T ss_pred EEeCCCCC-------CCcEEEEEEECCCCC--chHHHHHHHHHh
Confidence 99999887 899999999999883 233355666543
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=144.18 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=90.2
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---C-eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---G-QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~-~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
..+.|.|+|++|++ ++..|.+||||++.+. + .+++|+++++++||+|||+|.|.+... ++....|.|+|||+
T Consensus 24 ~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~-~l~~~~L~~~V~d~ 99 (138)
T 1wfm_A 24 QKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE-ELPTATLTLTLRTC 99 (138)
T ss_dssp TTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTT-SSTTCEEEEEEEEC
T ss_pred CCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHH-HcCCCEEEEEEEEC
Confidence 35789999999993 6778999999999993 2 358999999999999999999998764 23356899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
|.+ ++|++||++.++|.++ ..+....+|++|.+..
T Consensus 100 d~~-----~~dd~lG~~~i~l~~l-~~~~~~~~W~~L~~~~ 134 (138)
T 1wfm_A 100 DRF-----SRHSVAGELRLGLDGT-SVPLGAAQWGELKTSG 134 (138)
T ss_dssp CSS-----CTTSCSEEEEEESSSS-SSCTTCCEEEECCCCS
T ss_pred CCC-----CCCcEEEEEEEEcccc-cCcccccceeeCcCCC
Confidence 999 7999999999999996 4455667899998753
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-16 Score=151.95 Aligned_cols=109 Identities=28% Similarity=0.545 Sum_probs=91.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCe--------------EEEeeCcCCCCCCeeeeEEEEE-eeCCCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQ--------------RKRTSTKFRDLNPVWNEPLEFI-VSDPKNMDC 79 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~--------------~~kT~~~~~t~nP~wne~f~f~-~~~~~~~~~ 79 (1006)
.+.|.|+|++|++|+.++..|.+||||++++.+. +++|+++++++||+|||+|.|. +... ++..
T Consensus 17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~-~l~~ 95 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISME-QLMK 95 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHH-HHTT
T ss_pred CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHH-HccC
Confidence 3679999999999999998999999999999752 4899999999999999999997 4431 1125
Q ss_pred ceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 80 EELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 80 ~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
..|.|+|||++.+ +++++||++.+++.++ ..+.....|++|.+.+
T Consensus 96 ~~l~i~V~d~d~~-----~~~~~lG~~~i~l~~l-~~~~~~~~W~~L~~~~ 140 (142)
T 1rh8_A 96 KTLEVTVWDYDRF-----SSNDFLGEVLIDLSST-SHLDNTPRWYPLKEQT 140 (142)
T ss_dssp CEEEEEEEEECSS-----SCEEEEEEEEEETTSC-GGGTTCCEEEECBCCC
T ss_pred CEEEEEEEECCCC-----CCCceEEEEEEecccc-ccCCCCCeEEECCccC
Confidence 6899999999998 7899999999999996 4445567899998754
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=151.62 Aligned_cols=106 Identities=25% Similarity=0.374 Sum_probs=91.4
Q ss_pred ccEEEEEEEEecCCCCCCC-CCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEE-
Q 042999 15 VRKLVVEVVDARDLLPKDG-QGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVY- 87 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~-~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~- 87 (1006)
.+.|.|+|++|++|+.+|. .|.+||||++++.. .+++|+++++++||+|||+|.|.+... ...|.|+||
T Consensus 29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~~L~~~V~~ 104 (171)
T 2q3x_A 29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQ----GKVLQVIVWG 104 (171)
T ss_dssp TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCT----TEEEEEEEEE
T ss_pred CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCC----CCEEEEEEEE
Confidence 4689999999999999985 68999999999953 378999999999999999999998653 578999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
|+|.+ ++|++||++.++++++ ..+....+|++|.+..
T Consensus 105 d~d~~-----~~d~~iG~~~i~l~~l-~~~~~~~~W~~L~~~~ 141 (171)
T 2q3x_A 105 DYGRM-----DHKCFMGVAQILLEEL-DLSSMVIGWYKLFPPS 141 (171)
T ss_dssp ECSTT-----CSSEEEEEEEECGGGS-CTTSCEEEEEECBCGG
T ss_pred cCCCC-----CCCCEEEEEEEEHHHc-ccCCCcceeEECCCcc
Confidence 99998 7899999999999996 4455677899998754
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=143.17 Aligned_cols=120 Identities=20% Similarity=0.281 Sum_probs=91.0
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeeccc-CCCCCeeccEEEEEEeCCCcEEEEEEEECCCC
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTIT-DCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRM 695 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~-~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~ 695 (1006)
.+|.|.|+|++|++|+. .|++||||+++ .+..||++++ +++||+|||+|.|.+.+....|.|+|||+| +
T Consensus 12 ~~~~L~V~V~~A~~l~~-------~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~ 81 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDGA-------QEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-L 81 (167)
T ss_dssp CCCEEEEEEEEEECSSC-------GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-S
T ss_pred ceEEEEEEEEEEECCCC-------CCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-C
Confidence 46899999999998842 67899999999 3346787776 599999999999999988889999999999 7
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCc------eEeeEEEeeeecc--CCc--ccccEEEEEEEEecC
Q 042999 696 FADASEERPDYRIGKIRIRVSTLENNK------VYTTSYPLLVLLR--TGL--KKMGEIELAVRFVCP 753 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~~~~------~~~~~~~L~~~~~--~g~--~~~G~l~l~~~~~~~ 753 (1006)
+ +|++||++.|+|.++.... ....||.+..... .|. ...|.|.+.++|...
T Consensus 82 ~-------~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~ 142 (167)
T 2cjs_A 82 I-------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELP 142 (167)
T ss_dssp S-------CCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECC
T ss_pred C-------CCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecC
Confidence 6 7999999999999985432 2234444432211 111 123668888888643
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=146.11 Aligned_cols=108 Identities=26% Similarity=0.501 Sum_probs=91.4
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEE-eeCCCCCCCceEEEEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFI-VSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~-~~~~~~~~~~~L~i~V~ 87 (1006)
..+.|.|+|++|++|+.++..|.+||||++++.. .+++|+++++++||+|||+|.|. +... +.....|.|+||
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~-~~~~~~l~i~V~ 105 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEE-DMQRKTLRISVC 105 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHH-HHHHCEEEEEEE
T ss_pred CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHH-HccCCEEEEEEE
Confidence 4578999999999999999889999999999964 67999999999999999999998 4431 111258999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
|++.+ +++++||++.+++.++ ..+.....|++|.+
T Consensus 106 d~d~~-----~~d~~iG~~~i~l~~l-~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 106 DEDKF-----GHNEFIGETRFSLKKL-KANQRKNFNICLER 140 (142)
T ss_dssp EECTT-----SCEEEEEEEEEEGGGC-CTTCCEEEEEECBC
T ss_pred ECCCC-----CCCcEEEEEEEEHHHc-CCCCccEEEEeccc
Confidence 99998 7899999999999996 55556667888875
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=169.22 Aligned_cols=126 Identities=18% Similarity=0.215 Sum_probs=105.0
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeC--CCcEEEEEEEECC
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYD--PCTVLTVGVFDNW 693 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~--~~~~l~i~v~d~~ 693 (1006)
...|.|+|+|++|+||++ | . +|++||||+|.++++..||+++++++||+|||+|.|.+.+ ....|.|+|||+|
T Consensus 391 ~~~~~L~V~V~~A~~L~~-D---~-~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D 465 (540)
T 3nsj_A 391 RGLAHLVVSNFRAEHLWG-D---Y-TTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDAD 465 (540)
T ss_dssp TTEEEEEEEEEEEESCCC-S---S-CSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECC
T ss_pred CcccEEEEEEEEccCCCc-c---c-CCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECC
Confidence 468999999999999976 4 4 8899999999999999999999999999999999999754 6678999999999
Q ss_pred CCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecCCCCcccccccCCCCCC
Q 042999 694 RMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCPSMLPETSSVYGQPLLP 769 (1006)
Q Consensus 694 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~~~~~~~~~~~~~p~~p 769 (1006)
..+ +||+||.+.++|. .| ..+.|++| +.|+|++++..++.-. +--.++.-..|
T Consensus 466 ~~~-------~dD~LG~~~~~L~---~g-~~~~~~~l---------~~G~l~~~~~~~c~p~---l~g~~c~~y~~ 518 (540)
T 3nsj_A 466 YGW-------DDDLLGSCDRSPH---SG-FHEVTCEL---------NHGRVKFSYHAKCLPH---LTGGTCLEYAP 518 (540)
T ss_dssp SSS-------CCEEEEEEEECCC---SE-EEEEEEEC---------SSSEEEEEEEEEECTT---EESTTSCEECC
T ss_pred CCC-------CCCEEEEEEEEee---CC-cEEEEEEc---------CCeEEEEEEEEEECCC---CCCChhhhcCC
Confidence 987 8899999999987 34 35789887 2399999999998643 33344444444
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-15 Score=146.15 Aligned_cols=93 Identities=24% Similarity=0.374 Sum_probs=82.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+.++..|.+||||++++.+ .+++|+++++++||+|||+|.|.+.... +....|.|+|||+
T Consensus 36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~L~i~V~d~ 114 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD-LAKKSLDISVWDY 114 (166)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGG-GGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHh-cCCCEEEEEEEEC
Confidence 568999999999999999899999999999974 6799999999999999999999986532 2256899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQF 113 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l 113 (1006)
+.+ +++++||++.+++.++
T Consensus 115 d~~-----~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 115 DIG-----KSNDYIGGCQLGISAK 133 (166)
T ss_dssp CSS-----SCCEEEEEEEEETTCC
T ss_pred CCC-----CCCcEEEeEEEecccC
Confidence 998 7899999999999874
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.2e-15 Score=144.85 Aligned_cols=109 Identities=25% Similarity=0.333 Sum_probs=91.1
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+.++..|.+||||++++.. .+++|+++++++||+|||+|.|.+.... +....|.|+|||+
T Consensus 24 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~l~i~V~d~ 102 (159)
T 1tjx_A 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ-IQKVQVVVTVLDY 102 (159)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGG-GGGCEEEEEEEEC
T ss_pred CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHH-hCCcEEEEEEEEC
Confidence 568999999999999999889999999999952 4689999999999999999999986532 2245799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeee----------ee-eCCceeEEEEceec
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQF----------AR-RGDEGLVYFPLEKK 129 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l----------~~-~~~~~~~w~~L~~~ 129 (1006)
+.+ +++++||++.+++..+ +. .+....+|++|...
T Consensus 103 d~~-----~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~ 148 (159)
T 1tjx_A 103 DKI-----GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (159)
T ss_dssp CSS-----SCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred CCC-----CCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence 998 7899999999999852 22 23455689999764
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=134.03 Aligned_cols=117 Identities=16% Similarity=0.246 Sum_probs=102.0
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeeccc-CCCCCeeccEEEEEEeC---CCcEEEEEEEECCC
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTIT-DCFDPRWNEQYTWQVYD---PCTVLTVGVFDNWR 694 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~-~~~nP~wne~~~~~v~~---~~~~l~i~v~d~~~ 694 (1006)
--|+|.|.+|.|| .|++|||+.+.+-+.+.+|++++ +++||+|||.|+|++.. ....|.|.|||+++
T Consensus 21 msL~V~l~~a~~L---------pg~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~ 91 (144)
T 3l9b_A 21 MALIVHLKTVSEL---------RGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91 (144)
T ss_dssp EEEEEEEEEEESC---------CSCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT
T ss_pred EEEEEEEEEecCC---------CCCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc
Confidence 4799999999999 45799999999999999999998 59999999999999975 56799999999999
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 695 MFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 695 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
++ ++++||++.|+|.++..+.....+-+|.+.+.+. -.++|.+.++|.++
T Consensus 92 v~-------~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~--~~a~I~l~l~Y~pp 141 (144)
T 3l9b_A 92 VF-------SNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAI--IKTSLSMEVRYQAA 141 (144)
T ss_dssp TS-------CCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCE--EEEEEEEEEEEEET
T ss_pred cc-------CCCEEEEEEEEhHHhccCCeEEEeecccCCCCCc--cccEEEEEEEecCC
Confidence 98 8999999999999998877666777887754432 23999999999875
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-15 Score=145.08 Aligned_cols=108 Identities=27% Similarity=0.426 Sum_probs=89.5
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+.++..| +||||++++. ..+++|+++++++||+|||+|.|.+.... +....|.|+|||+
T Consensus 23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~L~i~V~d~ 100 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE-VQRRTLDVAVKNS 100 (142)
T ss_dssp TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHH-HHHCEEEEEEEEC
T ss_pred CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHH-hCcCEEEEEEEEC
Confidence 468999999999999999888 9999999993 25789999999999999999999975421 1135899999999
Q ss_pred CCCCCCCCCC--CceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 90 KRYCNGSGRK--NHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 90 d~~~~~~~~~--d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
+.+ ++ +++||++.+++.++ ..+....+|++|.+.+
T Consensus 101 d~~-----~~~~~~~iG~~~i~l~~~-~~~~~~~~W~~L~~~~ 137 (142)
T 2dmg_A 101 GGF-----LSKDKGLLGKVLVALASE-ELAKGWTQWYDLTEDS 137 (142)
T ss_dssp CCS-----SCCSCCCCEEEEEECCCS-TTTTCBCCBCCCBCSC
T ss_pred CCc-----cccCCcEEEEEEEecccc-cccccccceeeccCCC
Confidence 987 43 57999999999986 3444566899998754
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=141.94 Aligned_cols=92 Identities=29% Similarity=0.408 Sum_probs=75.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CCe---EEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DGQ---RKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~~---~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|+.++..|.+||||++++ ++. +++|+++++++||+|||+|.|.+.... +....|.|+|||+
T Consensus 29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~l~v~V~d~ 107 (153)
T 1w15_A 29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES-LEEISVEFLVLDS 107 (153)
T ss_dssp TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSS-STTEEEEEEEEEC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHH-hCceEEEEEEEeC
Confidence 4689999999999999998899999999999 333 679999999999999999999987642 2246899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQ 112 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~ 112 (1006)
+.+ +++++||++.++++.
T Consensus 108 d~~-----~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 108 ERG-----SRNEVIGRLVLGATA 125 (153)
T ss_dssp CTT-----SCCEEEEEEEESTTC
T ss_pred CCC-----CCCcEEEEEEECCCC
Confidence 998 789999999999987
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-14 Score=140.17 Aligned_cols=94 Identities=29% Similarity=0.481 Sum_probs=82.6
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|++|+.++..|.+||||++++.+ .+++|+++++++||+|||+|.|.+.... +....|.|+|||
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~-l~~~~l~~~V~d 92 (138)
T 3n5a_A 14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK-LRETTIIITVMD 92 (138)
T ss_dssp TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGG-GGGEEEEEEEEE
T ss_pred CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhh-cCceEEEEEEEE
Confidence 3578999999999999999889999999999963 4689999999999999999999987642 224689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeee
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQF 113 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l 113 (1006)
++.+ ++|++||++.++++++
T Consensus 93 ~~~~-----~~~~~lG~~~i~l~~~ 112 (138)
T 3n5a_A 93 KDKL-----SRNDVIGKIYLSWKSG 112 (138)
T ss_dssp CCSS-----SCCEEEEEEEESSSSC
T ss_pred CCCC-----CCCcEEEEEEEccccC
Confidence 9998 7899999999999863
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-15 Score=145.44 Aligned_cols=109 Identities=23% Similarity=0.310 Sum_probs=89.6
Q ss_pred ccEEEEEEEEecCCCCC-CC------CCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEE
Q 042999 15 VRKLVVEVVDARDLLPK-DG------QGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEI 84 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~-~~------~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i 84 (1006)
.+.|.|+|++|++|+.+ +. .|.+||||++++. .++++|+++++++||+|||+|.|.+.... .....|.|
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-l~~~~L~~ 103 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLE-AQRRTLLL 103 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHH-HHHSEEEE
T ss_pred CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHH-hccCEEEE
Confidence 46899999999999984 43 3589999999996 46789999999999999999999976421 11358999
Q ss_pred EEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 85 EVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 85 ~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
+|||++.+ +++++||++.+++.++ ........|+.|.+.+
T Consensus 104 ~V~d~d~~-----~~~~~iG~~~i~l~~l-~~~~~~~~w~~L~~~~ 143 (147)
T 2enp_A 104 TVVDFDKF-----SRHCVIGKVSVPLCEV-DLVKGGHWWKALIPSG 143 (147)
T ss_dssp EEECCSTT-----CCSCCCEEEEEETTTS-CTTTCCCEEECCBCCC
T ss_pred EEEECCCC-----cCCcEEEEEEEechhc-CCCCCccEEEEeecCC
Confidence 99999998 7899999999999996 3444456899998754
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-14 Score=170.44 Aligned_cols=119 Identities=26% Similarity=0.442 Sum_probs=103.3
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCC-cEEEEEEEECCC
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVGVFDNWR 694 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~v~d~~~ 694 (1006)
...|.|.|+|++|+||+++| . +|++||||++.++++..+|+++++|+||.|||.|.|.+..+. ..|.|+|||+|.
T Consensus 384 ~~~~~l~v~v~~a~~L~~~d---~-~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~ 459 (510)
T 3jzy_A 384 SGIGRLMVHVIEATELKACK---P-NGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ 459 (510)
T ss_dssp --CEEEEEEEEEEESCCCCS---T-TSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCS
T ss_pred CCCceEEEEeceeecCCCCC---C-CCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC
Confidence 46899999999999998854 4 889999999999999999999999999999999999998755 689999999999
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccCCce----EeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 695 MFADASEERPDYRIGKIRIRVSTLENNKV----YTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 695 ~~~~~~~~~~d~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
++ +|++||.+.++|.++..+.. ...|++|... ..|+|++++.+.
T Consensus 460 ~~-------~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------~~G~i~l~~~l~ 507 (510)
T 3jzy_A 460 FS-------PDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------PTGEVWVRFDLQ 507 (510)
T ss_dssp SS-------SCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------SSCEEEEEEEEE
T ss_pred CC-------CCCceEEEEEEHHHhccccCCCCceeeeecCCCC------CCceEEEEEEEE
Confidence 87 89999999999999976543 5789998542 359999988875
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-14 Score=133.43 Aligned_cols=99 Identities=21% Similarity=0.248 Sum_probs=78.5
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcC-CCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKF-RDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRY 92 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~ 92 (1006)
..+.|.|+|++|++|.. .|.+||||++. .+..+|++++ +++||+|||+|.|.+... ...|.|+|||+| +
T Consensus 3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~----~~~L~~~V~D~d-~ 72 (131)
T 2cjt_A 3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL----DLGLTVEVWNKG-L 72 (131)
T ss_dssp CCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC----SSEEEEEEEECC-S
T ss_pred cceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC----CCeEEEEEEECC-C
Confidence 35789999999998842 57899999999 3445566654 799999999999999864 457999999999 7
Q ss_pred CCCCCCCCceeEEEEEeCeeeeeeCCc-eeEEEEce
Q 042999 93 CNGSGRKNHFLGRVKLCGSQFARRGDE-GLVYFPLE 127 (1006)
Q Consensus 93 ~~~~~~~d~~lG~~~v~l~~l~~~~~~-~~~w~~L~ 127 (1006)
++|++||++.++++++...+.. ...|.++.
T Consensus 73 -----~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~ 103 (131)
T 2cjt_A 73 -----IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 103 (131)
T ss_dssp -----SCEEEEEEEEEEGGGSCBCSSCCCCEEEECB
T ss_pred -----CCCCeEEEEEEEHHHhhhcCCCCccccEEcc
Confidence 6899999999999997554422 22566654
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.51 E-value=6.1e-14 Score=166.10 Aligned_cols=122 Identities=23% Similarity=0.378 Sum_probs=102.7
Q ss_pred CCcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 12 ~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
....+.|.|+|++|++|+++|..|.+||||++.+++++++|+++++|+||+|||+|.|.+.... ...|.|+|||+|.
T Consensus 383 ~~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~---~~~l~~~v~d~d~ 459 (510)
T 3jzy_A 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLY---QDVLCLTLFDRDQ 459 (510)
T ss_dssp ---CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTT---TCEEEEEEEECCS
T ss_pred CCCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCC---CCEEEEEEEeCCC
Confidence 3456899999999999999999999999999999999999999999999999999999997653 4689999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCC---ceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGD---EGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~---~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
+ ++|++||++.++++++..... ....|++|.... .|+|.+.+.+.
T Consensus 460 ~-----~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~-----~G~i~l~~~l~ 507 (510)
T 3jzy_A 460 F-----SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVP-----TGEVWVRFDLQ 507 (510)
T ss_dssp S-----SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSS-----SCEEEEEEEEE
T ss_pred C-----CCCCceEEEEEEHHHhccccCCCCceeeeecCCCCC-----CceEEEEEEEE
Confidence 8 789999999999999643211 245799987543 68888887653
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-13 Score=135.43 Aligned_cols=122 Identities=19% Similarity=0.110 Sum_probs=89.0
Q ss_pred CCcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcC-CCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKF-RDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 12 ~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
.+..+.|.|+|++|++|. ..|.+||||++. .+..+|++++ +++||+|||+|.|.+... ...|.|+|||+|
T Consensus 10 ~g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~----~~~L~~~V~D~d 80 (167)
T 2cjs_A 10 GGILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRL----DLGLTVEVWNKG 80 (167)
T ss_dssp CSCCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCT----TSEEEEEEEECC
T ss_pred CCceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCC----CCEEEEEEEECC
Confidence 345679999999999884 257899999999 3446677765 699999999999999864 457999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCce-eEE----EEceecCCc-----eeeeEEEEEEEEEEec
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEG-LVY----FPLEKKSVF-----SWIRGEIGLRIYYYDE 148 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~-~~w----~~L~~~~~~-----~~~~G~i~l~~~~~~~ 148 (1006)
+ ++|++||++.++|+++...+... ..| +.+...... ....|.+++++.+...
T Consensus 81 -~-----~~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~ 142 (167)
T 2cjs_A 81 -L-----IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELP 142 (167)
T ss_dssp -S-----SCCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECC
T ss_pred -C-----CCCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecC
Confidence 7 68999999999999975544211 134 443322211 1234567777777543
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=158.41 Aligned_cols=113 Identities=21% Similarity=0.276 Sum_probs=95.7
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCN 94 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~ 94 (1006)
.+.|.|+|++|++|+. |..|++||||+|.+++++++|+++++++||+|||+|.|.+.... ....|+|+|||+|..
T Consensus 393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~--~~~~L~~~V~D~D~~-- 467 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLS--TGGPLRVQVWDADYG-- 467 (540)
T ss_dssp EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETT--TCCCEEEEEEECCSS--
T ss_pred ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCC--CCCEEEEEEEECCCC--
Confidence 6799999999999998 88899999999999999999999999999999999999864321 156899999999998
Q ss_pred CCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEec
Q 042999 95 GSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDE 148 (1006)
Q Consensus 95 ~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 148 (1006)
++||+||.+.++|.. + ....|++|. .|+|+++++..=.
T Consensus 468 ---~~dD~LG~~~~~L~~----g-~~~~~~~l~--------~G~l~~~~~~~c~ 505 (540)
T 3nsj_A 468 ---WDDDLLGSCDRSPHS----G-FHEVTCELN--------HGRVKFSYHAKCL 505 (540)
T ss_dssp ---SCCEEEEEEEECCCS----E-EEEEEEECS--------SSEEEEEEEEEEC
T ss_pred ---CCCCEEEEEEEEeeC----C-cEEEEEEcC--------CeEEEEEEEEEEC
Confidence 789999999999873 2 345788864 5888888775433
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6e-13 Score=158.33 Aligned_cols=124 Identities=19% Similarity=0.299 Sum_probs=104.6
Q ss_pred CCCcccEEEEEEEEecCCCCCCC--CCCCCcEEEEEECC-----eEEEeeCcCCC-CCCeeeeEEEEEeeCCCCCCCceE
Q 042999 11 QQFTVRKLVVEVVDARDLLPKDG--QGSSSPYVIADFDG-----QRKRTSTKFRD-LNPVWNEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 11 ~~~~~~~L~V~v~~a~~L~~~~~--~g~~dPyv~v~~~~-----~~~kT~~~~~t-~nP~wne~f~f~~~~~~~~~~~~L 82 (1006)
|....+.|.|+|++|++|+.++. .|.+||||+|.+.+ .+++|++++++ +||+|||+|.|.+..+. ...|
T Consensus 492 ~~~~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~e---l~~L 568 (624)
T 1djx_A 492 PWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD---LALV 568 (624)
T ss_dssp TTCCCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGG---GCEE
T ss_pred CCccceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCC---CCEE
Confidence 44567899999999999998874 68999999999943 67999999987 99999999999998753 3589
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
+|+|||+|.+ +++++||++.+++..+ .. ...|++|.+..+..-..|.|.|++.+.
T Consensus 569 ~~~V~D~D~~-----~~dd~iG~~~ipl~~L-~~---G~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 569 RFMVEDYDSS-----SKNDFIGQSTIPWNSL-KQ---GYRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp EEEEEECCSS-----SCCEEEEEEEEEGGGB-CC---EEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEEEEEcCCC-----CCCceeEEEEEEHHHc-CC---CcEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 9999999998 7899999999999996 33 346999987655544578999998875
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=161.09 Aligned_cols=122 Identities=18% Similarity=0.207 Sum_probs=102.2
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCC-CCCeeccEEEEEEeCCC-cEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDC-FDPRWNEQYTWQVYDPC-TVLTVGV 689 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~-~nP~wne~~~~~v~~~~-~~l~i~v 689 (1006)
..+.|+|+|++|++|++++. +. +|.+||||+|.+.+ ...||++++++ +||+|||+|.|.+..+. ..|.|+|
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~-~~-~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V 572 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNK-NK-NSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMV 572 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSS-CS-SSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEE
T ss_pred cceEEEEEEEEcCCCCcccc-cc-cCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEE
Confidence 57899999999999998652 13 67899999999943 68899999998 99999999999998764 6899999
Q ss_pred EECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 690 FDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 690 ~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
||+|.++ +|++||++.|+|..|..|. +|++|.+...... ..|+|.+.+.|+
T Consensus 573 ~D~D~~~-------~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~-~~~~L~v~i~~~ 623 (624)
T 1djx_A 573 EDYDSSS-------KNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH-PSATLFVKISIQ 623 (624)
T ss_dssp EECCSSS-------CCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE-EEEEEEEEEEEE
T ss_pred EEcCCCC-------CCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCC-CceEEEEEEEEE
Confidence 9999887 8999999999999998763 6999987543222 348888888875
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=8.6e-15 Score=170.01 Aligned_cols=124 Identities=20% Similarity=0.306 Sum_probs=23.8
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-EEEeecccCC---CCCeeccEEEEEEeCCCcEEEEEEEEC
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-WVRTRTITDC---FDPRWNEQYTWQVYDPCTVLTVGVFDN 692 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-~~rT~~~~~~---~nP~wne~~~~~v~~~~~~l~i~v~d~ 692 (1006)
..|.|+|+|++|+||+++ .||||++.++++ +.||+++++| +||+|||+|.|.+......|.|+|||+
T Consensus 9 ~~~~L~V~VieAk~L~~~---------ddpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~ 79 (483)
T 3bxj_A 9 VDNVLKLWIIEARELPPK---------KRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRD 79 (483)
T ss_dssp EEECC------------------------------------------------------CCEECC---------------
T ss_pred eccEEEEEEEEcCCcCCC---------CCCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEec
Confidence 468899999999999763 289999999875 6799999999 999999999999876668899999994
Q ss_pred -CC---CCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeecc---------------------CCcccccEEEEE
Q 042999 693 -WR---MFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLR---------------------TGLKKMGEIELA 747 (1006)
Q Consensus 693 -~~---~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~---------------------~g~~~~G~l~l~ 747 (1006)
|. .+ +|++||++.|++.++..+...+.||+|..... ++.+..|+|+|+
T Consensus 80 ~d~~~~~~-------~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~ 152 (483)
T 3bxj_A 80 SDKKRKKD-------KAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLK 152 (483)
T ss_dssp ----------------------------------CCEECC--------------------------------------CE
T ss_pred CCccccCC-------CCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEE
Confidence 42 34 79999999999999998887889999965432 122345999999
Q ss_pred EEEecCCCC
Q 042999 748 VRFVCPSML 756 (1006)
Q Consensus 748 ~~~~~~~~~ 756 (1006)
++|.+..++
T Consensus 153 v~~~~~~vl 161 (483)
T 3bxj_A 153 ARYQTMSIL 161 (483)
T ss_dssp EEEEECCBC
T ss_pred EEeeeeeec
Confidence 999976544
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.37 E-value=5e-13 Score=159.67 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=93.6
Q ss_pred CCcEEEEEEEeeccCCcc---CccCCCCCCCCCeEEEEEEC---CEEEEeecccCCCCCeeccEEEEEEeC-CCcEEEEE
Q 042999 616 PPVGILELGILGARGLLP---MKTKNGGKGSTDAYCVAKYG---KKWVRTRTITDCFDPRWNEQYTWQVYD-PCTVLTVG 688 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~---~~~~d~~~g~sdpyv~v~~~---~~~~rT~~~~~~~nP~wne~~~~~v~~-~~~~l~i~ 688 (1006)
++.|.|+|+|++|++|++ +|. .|++||||++.++ .+..||+++++++||+|||+|.|.+.. ....|+|+
T Consensus 15 ~~~g~L~V~Vi~A~nL~~~~~~D~----~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~ 90 (749)
T 1cjy_A 15 QYSHKFTVVVLRATKVTKGAFGDM----LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEIT 90 (749)
T ss_dssp CCCEEEEEEEEEEECCCSCHHHHH----HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEE
T ss_pred CCccEEEEEEEEEECCCCccccCC----CCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEE
Confidence 568999999999999988 553 7889999999998 468999999999999999999999987 45689999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|||+|.++ |++||++.|+|.++..+.....||+|.
T Consensus 91 V~D~D~~~--------ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 91 LMDANYVM--------DETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp EEECCSSS--------CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred EEECCCCC--------CceeEEEEEEHHHcCCCCceEEEEecC
Confidence 99999863 889999999999998887778999994
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.35 E-value=9.3e-13 Score=157.38 Aligned_cols=116 Identities=28% Similarity=0.382 Sum_probs=95.6
Q ss_pred CCCCCCCCCCcccEEEEEEEEecCCCC---CCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCC
Q 042999 4 PSQPPPQQQFTVRKLVVEVVDARDLLP---KDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNM 77 (1006)
Q Consensus 4 p~~~~~~~~~~~~~L~V~v~~a~~L~~---~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~ 77 (1006)
|.+....+....+.|.|+|++|++|+. +|..|.+||||++.++ ..+++|+++++++||+|||+|.|.+....
T Consensus 6 P~~~~~ve~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~-- 83 (749)
T 1cjy_A 6 PYQHIIVEHQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ-- 83 (749)
T ss_dssp -------CCCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS--
T ss_pred CCccccccCCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCC--
Confidence 333333344457899999999999998 7878899999999998 46799999999999999999999998743
Q ss_pred CCceEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 78 DCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 78 ~~~~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
...|.|+|||+|.+ + |++||++.+++.++ ..+.....|++|.+.
T Consensus 84 -~~~L~~~V~D~D~~-----~-ddfIG~v~I~L~~L-~~g~~~~~w~~L~~~ 127 (749)
T 1cjy_A 84 -ENVLEITLMDANYV-----M-DETLGTATFTVSSM-KVGEKKEVPFIFNQV 127 (749)
T ss_dssp -CCBCEEEEEECCSS-----S-CEEEEEECCBSTTS-CTTCCCCEEEEETTT
T ss_pred -CCEEEEEEEECCCC-----C-CceeEEEEEEHHHc-CCCCceEEEEecCCC
Confidence 56899999999999 7 99999999999996 556666789999753
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.8e-13 Score=154.09 Aligned_cols=122 Identities=20% Similarity=0.243 Sum_probs=22.4
Q ss_pred CcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCe-EEEeeCcCCC---CCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQ-RKRTSTKFRD---LNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 13 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~-~~kT~~~~~t---~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
+..+.|+|+|++|++|+++| ||||++.++++ ..||+++++| +||+|||+|.|.+... ...|.|+|||
T Consensus 8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~----~~~L~v~V~d 78 (483)
T 3bxj_A 8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA----VRALRLHLYR 78 (483)
T ss_dssp EEEECC--------------------------------------------------CCEECC------------------
T ss_pred eeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC----ccEEEEEEEe
Confidence 35678999999999998876 99999999875 5799999999 9999999999987543 3689999999
Q ss_pred C-C---CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCC----------------------ceeeeEEEEEE
Q 042999 89 D-K---RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV----------------------FSWIRGEIGLR 142 (1006)
Q Consensus 89 ~-d---~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~----------------------~~~~~G~i~l~ 142 (1006)
. | +. ++|++||.+.++++++ ..+.....|++|..... .....|.|+++
T Consensus 79 ~~d~~~~~-----~~d~~lG~v~i~l~~l-~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~ 152 (483)
T 3bxj_A 79 DSDKKRKK-----DKAGYVGLVTVPVATL-AGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLK 152 (483)
T ss_dssp ----------------------------------CCEECC--------------------------------------CE
T ss_pred cCCccccC-----CCCceEEEEEEEHHHh-cCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEE
Confidence 4 4 35 5899999999999996 45556678999964321 11346999999
Q ss_pred EEEEecC
Q 042999 143 IYYYDEL 149 (1006)
Q Consensus 143 ~~~~~~~ 149 (1006)
+.|.+..
T Consensus 153 v~~~~~~ 159 (483)
T 3bxj_A 153 ARYQTMS 159 (483)
T ss_dssp EEEEECC
T ss_pred EEeeeee
Confidence 9998775
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=141.72 Aligned_cols=104 Identities=25% Similarity=0.410 Sum_probs=91.3
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-----CCEEEEeecccCCCCCeeccEEEEEEeC--CCcEEEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYTWQVYD--PCTVLTVGVF 690 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-----~~~~~rT~~~~~~~nP~wne~~~~~v~~--~~~~l~i~v~ 690 (1006)
.+.|.|+|++|++|+++| . +|.+||||++.+ +....+|+++++++||.|||+|.|.+.. ....|.|+||
T Consensus 171 ~~~L~V~v~~a~~L~~~d---~-~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~ 246 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMD---P-NGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIW 246 (674)
T ss_dssp SSEEEEEEEEEESCCCCS---T-TSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEE
T ss_pred cceeeeeeecccccCCCC---c-ccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEe
Confidence 368999999999999865 4 889999999998 4567899999999999999999999875 4457999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
|+|..+ +|++||.+.++++++..... ..||.|...
T Consensus 247 d~d~~~-------~dd~iG~~~i~l~~l~~~~~-~~w~~Lls~ 281 (674)
T 3pfq_A 247 DWDLTS-------RNDFMGSLSFGISELQKAGV-DGWFKLLSQ 281 (674)
T ss_dssp ECCSSS-------CCEECCBCCCBTTHHHHCCE-EEEEECBCT
T ss_pred eccccc-------ccccccccccchhhhccCCc-ccceeeccc
Confidence 999987 89999999999999987653 899999763
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.1e-10 Score=134.63 Aligned_cols=112 Identities=19% Similarity=0.235 Sum_probs=90.0
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-------EEEEeecccC-CCCCeeccE-EEEE-EeCCC-cEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-------KWVRTRTITD-CFDPRWNEQ-YTWQ-VYDPC-TVLT 686 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-------~~~rT~~~~~-~~nP~wne~-~~~~-v~~~~-~~l~ 686 (1006)
.+.|+|+|++|++|+. .++||||+|.+.+ +.+||+++++ ++||+|||+ |.|. |..+. ..|+
T Consensus 649 ~~~L~V~Visaq~L~~--------~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lr 720 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSD--------KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVR 720 (816)
T ss_dssp CEEEEEEEEEEECCCS--------SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEE
T ss_pred ceEEEEEEEEcccCCC--------CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEE
Confidence 4899999999999964 2589999999854 6789999987 599999998 9998 76554 5899
Q ss_pred EEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 687 VGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 687 i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
|.|||++ |++||.+.|||+.|..|- +++||.+...... ..++|.+.+....
T Consensus 721 f~V~D~d-----------ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~-~~atLfv~i~~~~ 771 (816)
T 3qr0_A 721 IIVSEEN-----------GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPL-GLASVFAHIVAKD 771 (816)
T ss_dssp EEEEETT-----------SCEEEEEEEESTTCCCEE---EEEEEECTTSCEE-EEEEEEEEEEEEE
T ss_pred EEEEecC-----------CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCC-CceEEEEEEEEEe
Confidence 9999974 679999999999999873 5799987543322 2378888777764
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.9e-10 Score=138.38 Aligned_cols=106 Identities=29% Similarity=0.503 Sum_probs=91.6
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEE-----CCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~-----~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|++|.++|..|.+||||++.+ ...+++|+++++++||.|||+|.|.+.... . ...|.|+|||+
T Consensus 171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~-~-~~~L~v~v~d~ 248 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESD-K-DRRLSVEIWDW 248 (674)
T ss_dssp SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTT-T-TCEEEEEEEEC
T ss_pred cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCC-c-cceeeeEEeec
Confidence 4679999999999999999999999999999 346799999999999999999999987643 2 55799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
|.. ++|++||.+.++++++...+ ...|+.|...
T Consensus 249 d~~-----~~dd~iG~~~i~l~~l~~~~--~~~w~~Lls~ 281 (674)
T 3pfq_A 249 DLT-----SRNDFMGSLSFGISELQKAG--VDGWFKLLSQ 281 (674)
T ss_dssp CSS-----SCCEECCBCCCBTTHHHHCC--EEEEEECBCT
T ss_pred ccc-----cccccccccccchhhhccCC--cccceeeccc
Confidence 999 89999999999999974432 4679998754
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-09 Score=132.35 Aligned_cols=116 Identities=27% Similarity=0.375 Sum_probs=93.9
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC------eEEEeeCcCC-CCCCeeee-EEEEE-eeCCCCCCCceEEE
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG------QRKRTSTKFR-DLNPVWNE-PLEFI-VSDPKNMDCEELEI 84 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~-t~nP~wne-~f~f~-~~~~~~~~~~~L~i 84 (1006)
....|.|+|++|++|+. ..+||||+|.+.+ .+++|+++++ ++||+||| +|.|. +..++ ...|+|
T Consensus 723 ~~~~L~V~Visaq~L~~----~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pe---la~Lrf 795 (885)
T 3ohm_B 723 VANALRVKVISGQFLSD----RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPT---LASLRI 795 (885)
T ss_dssp CCEEEEEEEEEEESCCS----SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGG---GCEEEE
T ss_pred cceEEEEEEEEeccCcc----cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCC---cCEEEE
Confidence 45689999999999975 3689999999954 3579999975 69999999 69998 65543 347999
Q ss_pred EEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 85 EVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 85 ~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
+|||+| ++|||++.++|..| .. +.++++|.+..+..-..|.|.+.+.+.+..
T Consensus 796 ~V~D~d---------ddfiG~~~lpL~~L-~~---GyR~vpL~~~~g~~l~~atLfv~i~~~~~~ 847 (885)
T 3ohm_B 796 AAFEEG---------GKFVGHRILPVSAI-RS---GYHYVCLRNEANQPLCLPALLIYTEASDYI 847 (885)
T ss_dssp EEEETT---------TEEEEEEEEETTTC-CC---EEEEEEEECTTSCEEEEEEEEEEEEEEECC
T ss_pred EEEcCC---------ccEEeeEEEEHHHc-CC---CceEEEecCCCCCccCceEEEEEEEEEecC
Confidence 999975 48999999999985 43 356799988766655689999999998764
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-09 Score=129.91 Aligned_cols=117 Identities=20% Similarity=0.257 Sum_probs=94.9
Q ss_pred CcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-------eEEEeeCcCC-CCCCeeeeE-EEEE-eeCCCCCCCceE
Q 042999 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-------QRKRTSTKFR-DLNPVWNEP-LEFI-VSDPKNMDCEEL 82 (1006)
Q Consensus 13 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-------~~~kT~~~~~-t~nP~wne~-f~f~-~~~~~~~~~~~L 82 (1006)
...+.|.|+|++|++|+.+ .+||||+|.+.+ .+++|+++++ ++||+|||+ |.|. +..++ ...|
T Consensus 647 ~~~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pe---la~L 719 (816)
T 3qr0_A 647 VVAGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPD---LAVV 719 (816)
T ss_dssp SCCEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGG---GCEE
T ss_pred ccceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCC---ccEE
Confidence 3457899999999999753 689999999964 5689999875 699999998 9998 76543 3579
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
+|.|||++ +++||++.++|+.+ .. +.++++|.+..+..-..++|.+.+.+.+..
T Consensus 720 rf~V~D~d---------ddfiG~~~ipL~~L-~~---GyR~vpL~~~~g~~~~~atLfv~i~~~~~~ 773 (816)
T 3qr0_A 720 RIIVSEEN---------GKFIGHRVMPLDGI-KP---GYRHVPLRNESNRPLGLASVFAHIVAKDYV 773 (816)
T ss_dssp EEEEEETT---------SCEEEEEEEESTTC-CC---EEEEEEEECTTSCEEEEEEEEEEEEEEECC
T ss_pred EEEEEecC---------CCeeeEEEEEHHHc-CC---cceEEEEeCCCCCCCCceEEEEEEEEEecC
Confidence 99999963 58999999999985 43 356899988766655668999999988765
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=133.46 Aligned_cols=113 Identities=18% Similarity=0.292 Sum_probs=88.8
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-C---C--EEEEee-cccC-CCCCeecc-EEEE-EEeCCC-cE
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-G---K--KWVRTR-TITD-CFDPRWNE-QYTW-QVYDPC-TV 684 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-~---~--~~~rT~-~~~~-~~nP~wne-~~~~-~v~~~~-~~ 684 (1006)
...|.|.|+|++|++|+. +++||||+|.+ | . +.+||+ ++++ ++||+||| .|.| .|..+. ..
T Consensus 675 ~~~~~L~V~Visa~~L~~--------~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~ 746 (799)
T 2zkm_X 675 VVATTLSITVISGQFLSE--------RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELAS 746 (799)
T ss_dssp TTCEEEEEEEEEEESCCS--------SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCE
T ss_pred eeeeeEEEEEEeccccCc--------cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccE
Confidence 356899999999999963 35899999998 4 1 368999 8876 58999999 6999 786544 48
Q ss_pred EEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 685 LTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 685 l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
|.|.|||+| +++||.+.|||+.|..| .++++|.+..+... ..+.|.+.+.++
T Consensus 747 Lr~~V~D~d-----------~d~iG~~~ipl~~L~~G---~r~v~L~~~~g~~~-~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 747 LRVAVMEEG-----------NKFLGHRIIPINALNSG---YHHLCLHSESNMPL-TMPALFIFLEMK 798 (799)
T ss_dssp EEEEEEETT-----------TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEE-EEEEEEEEEEEE
T ss_pred EEEEEEEeC-----------CCccceEeeehhhcCCC---cEEEeccCCCCCCC-CceEEEEEEEEE
Confidence 999999985 57999999999999876 36899976533222 237788877764
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.98 E-value=3.7e-09 Score=128.77 Aligned_cols=115 Identities=23% Similarity=0.348 Sum_probs=90.6
Q ss_pred CCcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC------eEEEee-CcC-CCCCCeeee-EEEE-EeeCCCCCCCce
Q 042999 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG------QRKRTS-TKF-RDLNPVWNE-PLEF-IVSDPKNMDCEE 81 (1006)
Q Consensus 12 ~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~------~~~kT~-~~~-~t~nP~wne-~f~f-~~~~~~~~~~~~ 81 (1006)
.-..+.|.|+|++|++|+. +.+||||+|.+.+ ++++|+ +++ +++||+||| +|.| .+..++ ...
T Consensus 674 ~~~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~e---l~~ 746 (799)
T 2zkm_X 674 VVVATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE---LAS 746 (799)
T ss_dssp TTTCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG---GCE
T ss_pred ceeeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCC---ccE
Confidence 3356799999999999974 4689999999942 357999 776 569999999 7999 776543 347
Q ss_pred EEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 82 LEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 82 L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
|+|.|||++ +++||++.++++.+ .. +..|++|.+..+..-..+.|.+++.+.
T Consensus 747 Lr~~V~D~d---------~d~iG~~~ipl~~L-~~---G~r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 747 LRVAVMEEG---------NKFLGHRIIPINAL-NS---GYHHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp EEEEEEETT---------TEEEEEEEEEGGGB-CC---EEEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred EEEEEEEeC---------CCccceEeeehhhc-CC---CcEEEeccCCCCCCCCceEEEEEEEEE
Confidence 999999974 48999999999986 33 356899987654444568888888764
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-09 Score=128.83 Aligned_cols=112 Identities=22% Similarity=0.221 Sum_probs=89.5
Q ss_pred EEEEEEEEEeecCcccCCCCCCCCCCcEEEEEECC------ccceeeeeecCCCCCCceecc-eeeee-eccCCCCcEEE
Q 042999 455 WYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLAL------QSARTRRGSMNNHSSSFHWHE-DVFFV-AAEPFEDSLIL 526 (1006)
Q Consensus 455 ~~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~lg~------~~~kT~~~~~~~~t~nP~w~e-~~~f~-v~~~~~~~L~v 526 (1006)
..|+|.|++|++|+. ..+||||+|.+.+ .++||++++ +++.||+||| .|.|. |..+....|+|
T Consensus 725 ~~L~V~Visaq~L~~-------~~~DPYV~V~l~g~p~D~~~k~kTkvi~--~NglNPvWnEe~F~F~~V~~pela~Lrf 795 (885)
T 3ohm_B 725 NALRVKVISGQFLSD-------RKVGIYVEVDMFGLPVDTRRKYRTRTSQ--GNSFNPVWDEEPFDFPKVVLPTLASLRI 795 (885)
T ss_dssp EEEEEEEEEEESCCS-------SCCCEEEEEEEESSTTTCBCCCCCCCCS--SCSSSCBCCCCCEEEEEESCGGGCEEEE
T ss_pred eEEEEEEEEeccCcc-------cCCCcEEEEEEeCCCcccccceeeEEee--CCCcCCeeccceeEEeeEEcCCcCEEEE
Confidence 469999999999982 2689999999954 357888764 3569999999 59998 77676678999
Q ss_pred EEEECCCCccccceeEEEEEeccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEeee
Q 042999 527 LVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCLE 590 (1006)
Q Consensus 527 ~V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l~ 590 (1006)
.|||++ +++||++.++|..|.. +.++++|....+ .....|.|.+.+.+.
T Consensus 796 ~V~D~d-----ddfiG~~~lpL~~L~~-------GyR~vpL~~~~g---~~l~~atLfv~i~~~ 844 (885)
T 3ohm_B 796 AAFEEG-----GKFVGHRILPVSAIRS-------GYHYVCLRNEAN---QPLCLPALLIYTEAS 844 (885)
T ss_dssp EEEETT-----TEEEEEEEEETTTCCC-------EEEEEEEECTTS---CEEEEEEEEEEEEEE
T ss_pred EEEcCC-----ccEEeeEEEEHHHcCC-------CceEEEecCCCC---CccCceEEEEEEEEE
Confidence 999987 7899999999999864 356788887654 333468888888775
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4.5e-08 Score=87.60 Aligned_cols=108 Identities=14% Similarity=0.273 Sum_probs=84.1
Q ss_pred cEEEEEEEEecC--CCCCCCCCCCCcEEEEEECCe----EEEe-eCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 16 RKLVVEVVDARD--LLPKDGQGSSSPYVIADFDGQ----RKRT-STKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 16 ~~L~V~v~~a~~--L~~~~~~g~~dPyv~v~~~~~----~~kT-~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
.-|+|.+.++.- |++ .....||||.|.++.. +.+| .++++|..|+|||+|.-.+.. ++.|.|.|++
T Consensus 6 ~flRi~~~~~~~~~~~~--~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-----Gr~l~i~Vfh 78 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQA--EDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-----GRVIQIVLMR 78 (126)
T ss_dssp CEEEEEEEEEECSSCCC--SSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-----TCEEEEEEEE
T ss_pred ccEEeeeccccccccCC--ccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-----CEEEEEEEEc
Confidence 467788766553 332 2347899999999743 2465 788899999999999999888 5689999995
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeee----CCceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARR----GDEGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
. ..+|+..|++++.+|+.. ++..+.|+.|++ .|+|++.+.|+
T Consensus 79 ~---------a~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP-------~Gkl~~~i~~~ 124 (126)
T 1yrk_A 79 A---------AEEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMSVQYF 124 (126)
T ss_dssp E---------TTEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEE
T ss_pred C---------CCCeeeEEEEEHHHHHhhhccCCCceEEEEeccc-------CcEEEEEEEEe
Confidence 3 238999999999998643 445678999986 79999999886
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=6.8e-08 Score=87.55 Aligned_cols=114 Identities=12% Similarity=0.196 Sum_probs=87.4
Q ss_pred ccEEEEEEEEecCCCCCC-CCCCCCcEEEEEECCe----EEEe-eCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 15 VRKLVVEVVDARDLLPKD-GQGSSSPYVIADFDGQ----RKRT-STKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~-~~g~~dPyv~v~~~~~----~~kT-~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..-|+|.+.+..--+-+. .....||||.|.++.. +.+| .++++|..|+|||+|.-.+.. ++.|.|.|++
T Consensus 9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-----Gr~l~i~Vfh 83 (138)
T 2enj_A 9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-----GRVMQIIVKG 83 (138)
T ss_dssp CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-----SCEEEEEEEC
T ss_pred CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-----CeEEEEEEEc
Confidence 446788887765433221 1346899999999742 3677 777789999999999999887 5789999995
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeee----CCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARR----GDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
. ..+|+..|++++.+|+.. ++..+.|+.|++ .|+|++.+.|.-..
T Consensus 84 ~---------a~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP-------~Gkl~v~i~~~~e~ 132 (138)
T 2enj_A 84 K---------NVDLISETTVELYSLAERCRKNNGKTEIWLELKP-------QGRMLMNARYFLEM 132 (138)
T ss_dssp S---------SCSCCEEEEEESHHHHHHHHHTTTCEEEEEECBS-------SCEEEEEEEECCCS
T ss_pred C---------CCCeeeEEEEEHHHHHhhhccCCCceEEEEeccc-------CcEEEEEEEEEEec
Confidence 3 238999999999998643 455678999986 79999999997554
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-07 Score=83.41 Aligned_cols=107 Identities=15% Similarity=0.299 Sum_probs=81.3
Q ss_pred EEEEEEEeecc--CCccCccCCCCCCCCCeEEEEEECCEE----EEe-ecccCCCCCeeccEEEEEEeCCCcEEEEEEEE
Q 042999 619 GILELGILGAR--GLLPMKTKNGGKGSTDAYCVAKYGKKW----VRT-RTITDCFDPRWNEQYTWQVYDPCTVLTVGVFD 691 (1006)
Q Consensus 619 g~L~v~v~~a~--~L~~~~~~d~~~g~sdpyv~v~~~~~~----~rT-~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d 691 (1006)
+.|+|.+.++. .|++. ....||||.|.+.... .+| .+.++|..|.||+.|.-.|.+ ...|.|.||+
T Consensus 6 ~flRi~~~~~~~~~~~~~------~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh 78 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAE------DEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMR 78 (126)
T ss_dssp CEEEEEEEEEECSSCCCS------SSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEE
T ss_pred ccEEeeeccccccccCCc------cccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEc
Confidence 56777775554 33321 2358999999986433 265 777889999999999998765 4569999996
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEccccc-----CCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 692 NWRMFADASEERPDYRIGKIRIRVSTLE-----NNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 692 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
.. -++++.++|++.+|. .+...+.|+.|. ..|.|++.++|-
T Consensus 79 ~a-----------~~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe--------P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 79 AA-----------EEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMSVQYF 124 (126)
T ss_dssp ET-----------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEEE
T ss_pred CC-----------CCeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEEe
Confidence 42 379999999999997 456778999995 359999999874
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.1e-07 Score=84.32 Aligned_cols=109 Identities=14% Similarity=0.194 Sum_probs=82.1
Q ss_pred cEEEEEEEeeccC--CccCccCCCCCCCCCeEEEEEECCEE----EEe-ecccCCCCCeeccEEEEEEeCCCcEEEEEEE
Q 042999 618 VGILELGILGARG--LLPMKTKNGGKGSTDAYCVAKYGKKW----VRT-RTITDCFDPRWNEQYTWQVYDPCTVLTVGVF 690 (1006)
Q Consensus 618 ~g~L~v~v~~a~~--L~~~~~~d~~~g~sdpyv~v~~~~~~----~rT-~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~ 690 (1006)
-+.|+|.+.++.- |++.. .-..||||.|.+.... .+| .+.++|..|.||+.|.-.|.+ ...|.|.||
T Consensus 9 ~~flRi~l~~~~~~~~~~~~-----~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vf 82 (138)
T 2enj_A 9 SPFLRIGLSNFDCGSCQSCQ-----GEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVK 82 (138)
T ss_dssp CCCEEEEEEEEECCCCCCSC-----CCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEE
T ss_pred CcceEEEeeccccCCCCCcc-----cccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEE
Confidence 3567777766553 32211 2358999999986432 577 677789999999999988755 456999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEccccc-----CCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLE-----NNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
+.. -+|++.++|++.+|. .+...+.|+.|. ..|+|++.++|.
T Consensus 83 h~a-----------~~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe--------P~Gkl~v~i~~~ 129 (138)
T 2enj_A 83 GKN-----------VDLISETTVELYSLAERCRKNNGKTEIWLELK--------PQGRMLMNARYF 129 (138)
T ss_dssp CSS-----------CSCCEEEEEESHHHHHHHHHTTTCEEEEEECB--------SSCEEEEEEEEC
T ss_pred cCC-----------CCeeeEEEEEHHHHHhhhccCCCceEEEEecc--------cCcEEEEEEEEE
Confidence 532 379999999999997 455678999995 359999999995
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.58 E-value=11 Score=37.43 Aligned_cols=79 Identities=10% Similarity=0.130 Sum_probs=50.4
Q ss_pred CCCcccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---------------C----eEEEeeCcCCCCCCeeeeEEEEEe
Q 042999 11 QQFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---------------G----QRKRTSTKFRDLNPVWNEPLEFIV 71 (1006)
Q Consensus 11 ~~~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---------------~----~~~kT~~~~~t~nP~wne~f~f~~ 71 (1006)
|......|.|++.++. +.........|--|.+.+. + ..++|.+...+.+|.|+|++.+.+
T Consensus 22 Pgd~RNdLYVtl~~g~-F~~~~k~~aRNIeV~vevr~~~G~~i~~~I~~~sg~~~~se~~S~V~YHnk~P~w~EtIKi~L 100 (220)
T 3l4c_A 22 PGDVRNDIYVTLVQGD-FDKGSKTTAKNVEVTVSVYDEDGKRLEHVIFPGAGDEAISEYKSVIYYQVKQPRWFETVKVAI 100 (220)
T ss_dssp ----CEEEEEEEEEEE-CCCSSSSSCCCEEEEEEEEETTSCBCCSCEECTTCCSCBSCEECCCCTTCSSCCCCEEEEEEE
T ss_pred CCCCcccEEEEeeEeE-ECCCCCCCcceEEEEEEEEcCCCCCcccCEEcCCCCCCceeEEEEEEEcCCCCCceEeEEEee
Confidence 4556677888888874 3221112233444544441 1 237888888999999999999998
Q ss_pred eCCCCCCCceEEEEEEeCCC
Q 042999 72 SDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 72 ~~~~~~~~~~L~i~V~d~d~ 91 (1006)
..... ....|.|.+++...
T Consensus 101 P~~~~-~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 101 PIEDV-NRSHLRFTFRHRSS 119 (220)
T ss_dssp CTTSS-TTEEEEEEEEECCC
T ss_pred Chhhc-CCeEEEEEEEEecc
Confidence 87432 36789999988653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1006 | ||||
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 7e-17 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 2e-11 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 4e-10 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 1e-04 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 4e-16 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-13 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-07 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 2e-05 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 3e-15 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 4e-11 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 4e-10 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 9e-05 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 6e-15 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 1e-14 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 5e-09 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-13 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 1e-08 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 5e-07 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 7e-04 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 7e-13 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 3e-09 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 8e-04 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 0.001 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 9e-13 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 2e-07 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 5e-05 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 6e-12 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 2e-06 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-04 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 8e-12 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 9e-07 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 0.002 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 9e-12 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 3e-09 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 1e-07 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 1e-11 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 2e-07 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 1e-05 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 9e-11 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-08 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 0.001 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 5e-10 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 1e-08 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 0.002 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 7e-10 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-09 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 9e-09 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 1e-07 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 5e-09 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 5e-06 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 5e-09 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 3e-06 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 7e-09 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 1e-04 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 0.001 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 8e-08 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 1e-06 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 2e-06 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 1e-06 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 1e-04 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 8e-05 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 1e-04 |
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.5 bits (185), Expect = 7e-17
Identities = 24/121 (19%), Positives = 49/121 (40%), Gaps = 10/121 (8%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIA-----DFDGQRKRTSTKFRDLNPVWNEP 66
+L+V ++ A+DL ++ +PYV D ++RT T + L P WN+
Sbjct: 10 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQT 69
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126
+ + LEI +++ R ++ FLG + + + ++ L
Sbjct: 70 FIYSPVHRREFRERMLEITLWDQARV---REEESEFLGEILIELETALLDDEPH--WYKL 124
Query: 127 E 127
+
Sbjct: 125 Q 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.1 bits (145), Expect = 2e-11
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 17/116 (14%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALF-H 351
L V I A+ L E PYVKI + P+WNQ F
Sbjct: 16 LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75
Query: 352 NKNDSVSATLEITVWD----SPTEN-FLGGVCFDLSDVPVRDPPDSPLAPQWYRLE 402
++ + LEIT+WD E+ FLG + +L + D P WY+L+
Sbjct: 76 HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD------EPHWYKLQ 125
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.3 bits (135), Expect = 4e-10
Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 19/124 (15%)
Query: 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVA-----KYGKKWVRTRTITDCFDPRW 670
L + ILGA+ L + + Y + K RT+T+ +P+W
Sbjct: 11 KVGHQLIVTILGAKDLPSRE----DGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW 66
Query: 671 NEQYTWQVYDPCT----VLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTT 726
N+ + + +L + ++D R+ + SE +G+I I + T +
Sbjct: 67 NQTFIYSPVHRREFRERMLEITLWDQARVREEESE-----FLGEILIELETALLDDE-PH 120
Query: 727 SYPL 730
Y L
Sbjct: 121 WYKL 124
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (95), Expect = 1e-04
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 16/126 (12%)
Query: 453 KLWY------LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSF 506
KLW+ L VT++ A+DL + P +++ RR +
Sbjct: 6 KLWFDKVGHQLIVTILGAKDL-PSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEP 64
Query: 507 HWHEDVFFVAAEPFED---SLILLVEDR-TAKDAAAVILGHAVVPVSSIDQRIDERHVAS 562
W++ + E L + + D+ ++ + LG ++ + + DE H
Sbjct: 65 KWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD-DEPH--- 120
Query: 563 KWFPLE 568
W+ L+
Sbjct: 121 -WYKLQ 125
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 74.0 bits (181), Expect = 4e-16
Identities = 25/137 (18%), Positives = 50/137 (36%), Gaps = 13/137 (9%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTST-KFRDLNPVWNEPLEFIVSDPK 75
L V +V A+ L D + PYV Q ++++ + P WNE F VS+
Sbjct: 11 TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG- 69
Query: 76 NMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWI 135
EL+ ++++ ++ +G + G + + K +
Sbjct: 70 ---TTELKAKIFDKDVGT-----EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEY--- 118
Query: 136 RGEIGLRIYYYDELSEE 152
+GEI + + +
Sbjct: 119 KGEIWVALSFKPSGPSS 135
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 67.1 bits (163), Expect = 1e-13
Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 15/138 (10%)
Query: 615 KPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDC-FDPRWNEQ 673
P G LE+ ++ A+GL + D Y + ++ P WNE
Sbjct: 6 SGPHGTLEVVLVSAKGLEDADFL----NNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNET 61
Query: 674 YTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733
+ + V + T L +FD D +G+ I + + + +V
Sbjct: 62 FIFTVSEGTTELKAKIFDKDVGTEDD-------AVGEATIPLEPVFVEGSIPPTAYNVVK 114
Query: 734 LRTGLKKMGEIELAVRFV 751
+ GEI +A+ F
Sbjct: 115 ---DEEYKGEIWVALSFK 129
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 49.7 bits (118), Expect = 1e-07
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 20/133 (15%)
Query: 294 PMMYLFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFA 348
P L V + A+GL + PYV++ + +KS A +PEWN+ F
Sbjct: 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSN----VAEGMGTTPEWNETFI 63
Query: 349 LFHNKNDSVSATLEITVWDSPTEN-FLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASD 407
F + +I D TE+ +G L V + + P Y +
Sbjct: 64 -FTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPV----FVEGSIPPTAYNVV----- 113
Query: 408 QNNRVSGDIQLAV 420
++ G+I +A+
Sbjct: 114 KDEEYKGEIWVAL 126
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 43.6 bits (102), Expect = 2e-05
Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 19/144 (13%)
Query: 446 SKVYQSPKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSS 505
S P L V ++ A+ L + L + V+ Q ++ ++
Sbjct: 2 SSGSSGPH-GTLEVVLVSAKGL---EDADFLNNMDPYVQLTCRTQDQKSNV--AEGMGTT 55
Query: 506 FHWHEDVFFVAAEPFEDS-LILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKW 564
W+E F +E + + +D +D +G A +P+ + E +
Sbjct: 56 PEWNETFIFTVSEGTTELKAKIFDKDVGTED---DAVGEATIPLEPV---FVEGSIPPTA 109
Query: 565 FPLEGSCGRGCARSYCGRIQLKLC 588
+ + Y G I + L
Sbjct: 110 YNVVKD------EEYKGEIWVALS 127
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 71.3 bits (174), Expect = 3e-15
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIV 71
L+V V DA++L+P D G S PYV +++T T LNP WNE F +
Sbjct: 16 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 75
Query: 72 SDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130
+ L +E+++ +N F+G + S+ + G +G +F L +
Sbjct: 76 KESDK--DRRLSVEIWDWDLT-----SRNDFMGSLSFGISELQKAGVDG--WFKLLSQE 125
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.3 bits (143), Expect = 4e-11
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQ 673
+L + + A+ L+PM G +D Y K + +T+TI +P WNE
Sbjct: 15 EVLIVVVRDAKNLVPMD----PNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNET 70
Query: 674 YTWQVYDP--CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731
+ +Q+ + L+V ++D + +G + +S L+ V + LL
Sbjct: 71 FRFQLKESDKDRRLSVEIWDWDLT-------SRNDFMGSLSFGISELQKAGV-DGWFKLL 122
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.6 bits (136), Expect = 4e-10
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
L V +R A+ LVP + PYVK++ K + +PEWN+ F F
Sbjct: 17 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFR-FQL 75
Query: 353 KNDSVSATLEITVWDSPT---ENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGE 404
K L + +WD +F+G + F +S++ W++L +
Sbjct: 76 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG------VDGWFKLLSQ 124
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.2 bits (96), Expect = 9e-05
Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 12/116 (10%)
Query: 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVA 516
L V V +A++L + + L+ P +++K +S ++ S + W+E F
Sbjct: 17 LIVVVRDAKNL-VPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 75
Query: 517 AEPFEDSLILLV---EDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEG 569
E +D + + D T+++ +G +S + + + WF L
Sbjct: 76 KESDKDRRLSVEIWDWDLTSRN---DFMGSLSFGISELQKAGVD-----GWFKLLS 123
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (171), Expect = 6e-15
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 12/131 (9%)
Query: 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDP 74
V L V+V+ A DLL D G S P+ + + R +T T +++LNP WN+ F + D
Sbjct: 5 VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI 64
Query: 75 KNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSW 134
+ LE+ V+++ FLG+V + + L+ K +
Sbjct: 65 ----HDVLEVTVFDEDGDKP-----PDFLGKVAIPLLSIRDGQPN---CYVLKNKDLEQA 112
Query: 135 IRGEIGLRIYY 145
+G I L +
Sbjct: 113 FKGVIYLEMDL 123
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.0 bits (168), Expect = 1e-14
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYT 675
VGIL++ +L A LL G +D +C+ + G ++T T+ +P WN+ +T
Sbjct: 3 KDVGILQVKVLKAADLLAADF----SGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFT 58
Query: 676 WQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLR 735
+ + D VL V VFD P +GK+ I + ++ + + Y L
Sbjct: 59 FPIKDIHDVLEVTVFDEDGDK-------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDL 109
Query: 736 TGLKKMGEIELAVRFV 751
K G I L + +
Sbjct: 110 EQAFK-GVIYLEMDLI 124
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 5e-09
Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 25/137 (18%)
Query: 292 VEPMMYLFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQV 346
V+ + L VK+ KA L+ + P+ + + + + +PEWN+V
Sbjct: 2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQ-----THTVYKNLNPEWNKV 56
Query: 347 FALFHNKNDSVSATLEITVWDS---PTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEG 403
F V E+TV+D +FLG V L + P Y L+
Sbjct: 57 FTFPIKDIHDVL---EVTVFDEDGDKPPDFLGKVAIPLLSIR-------DGQPNCYVLKN 106
Query: 404 EASDQNNRVSGDIQLAV 420
+ D G I L +
Sbjct: 107 K--DLEQAFKGVIYLEM 121
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 66.3 bits (161), Expect = 2e-13
Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 21/141 (14%)
Query: 1 MTTPSQPPPQQ-----QFTVR------KLVVEVVDARDLLPKDGQGSSSPYVIADF---D 46
M +P ++ Q+++ +L+V ++ A +L D G+S PYV
Sbjct: 8 MVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK 67
Query: 47 GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRV 106
++ T + LNPV+NE F V + + L + VY+ R+ K+ +G
Sbjct: 68 KKKFETKVHRKTLNPVFNEQFTFKVPYS-ELGGKTLVMAVYDFDRF-----SKHDIIGEF 121
Query: 107 KLCGSQFARRGDEGLVYFPLE 127
K+ + G + L+
Sbjct: 122 KVPMNTV-DFGHVTEEWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.8 bits (126), Expect = 1e-08
Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 17/122 (13%)
Query: 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYC---VAKYGKKWVRTRTITDCFDPRWNE 672
L +GI+ A L + G++D Y + KK T+ +P +NE
Sbjct: 31 FQNNQLLVGIIQAAELPALDMG----GTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 86
Query: 673 QYTWQVYDPC---TVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYP 729
Q+T++V L + V+D + F IG+ ++ ++T++ V
Sbjct: 87 QFTFKVPYSELGGKTLVMAVYD-FDRF------SKHDIIGEFKVPMNTVDFGHVTEEWRD 139
Query: 730 LL 731
L
Sbjct: 140 LQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.8 bits (113), Expect = 5e-07
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 15/113 (13%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
L V I +A L + PYVK+ KK + +P +N+ F
Sbjct: 36 LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF--ETKVHRKTLNPVFNEQFTFKVP 93
Query: 353 KNDSVSATLEITVWDSPT---ENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLE 402
++ TL + V+D + +G ++ V + +W L+
Sbjct: 94 YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTE-----EWRDLQ 141
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.0 bits (90), Expect = 7e-04
Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 14/116 (12%)
Query: 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVA 516
L V +++A +L L + VK L + ++ + + ++E F
Sbjct: 36 LLVGIIQAAEL---PALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKV 92
Query: 517 AEPFEDSLILLVE----DRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLE 568
L++ DR +K I+G VP++++D HV +W L+
Sbjct: 93 PYSELGGKTLVMAVYDFDRFSKH---DIIGEFKVPMNTVDF----GHVTEEWRDLQ 141
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.7 bits (157), Expect = 7e-13
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQ-----RKRTSTKFRDLNPVWNEP 66
Q T L V V+ AR L D G S PYV + +K+T K N V+NE
Sbjct: 11 QSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNEL 70
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
F + +++ +E V + +R G +N +GR+ L
Sbjct: 71 FVFDIPCE-SLEEISVEFLVLDSER-----GSRNEVIGRLVL 106
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.9 bits (129), Expect = 3e-09
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 17/120 (14%)
Query: 298 LFVKIRKARGLVP-----NEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
L V + KAR L PYVK+ K+ + +N++F
Sbjct: 17 LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76
Query: 353 KNDSVSATLEITVWDSPT---ENFLGGVCFDLSDVP--------VRDPPDSPLAPQWYRL 401
++E V DS +G + + + D P +A +W+ L
Sbjct: 77 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIA-KWHML 135
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.5 bits (89), Expect = 8e-04
Identities = 18/123 (14%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query: 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVA 516
L V V++A+ L ++ L+ P ++V A + ++ + + + ++E F
Sbjct: 17 LTVVVLKARHL-PKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDI 75
Query: 517 AEPFEDSLILLVE----DRTAKDAAAVILGHAVVPVSSIDQRIDE--------RHVASKW 564
+ + + +R +++ ++G V+ ++ R +KW
Sbjct: 76 PCESLEEISVEFLVLDSERGSRN---EVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKW 132
Query: 565 FPL 567
L
Sbjct: 133 HML 135
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 0.001
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 19/111 (17%)
Query: 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKW-----VRTRTITDCFDPRW 670
L + +L AR L G +D Y +T + +
Sbjct: 12 STTNTLTVVVLKARHLPKSD----VSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 67
Query: 671 NEQYTWQVYDP---CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTL 718
NE + + + + V D+ R + IG++ + +
Sbjct: 68 NELFVFDIPCESLEEISVEFLVLDSERG-------SRNEVIGRLVLGATAE 111
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.5 bits (156), Expect = 9e-13
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVI--------------ADFDGQRKRTSTKFR 57
+ + L++ ++ AR+L+P+D G S P+V ++RT +
Sbjct: 14 NYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK 73
Query: 58 DLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRG 117
LNP WN+ + + + + + LE+ V + N FLG V + S
Sbjct: 74 SLNPEWNQTVIYKSISMEQLMKKTLEVTV-----WDYDRFSSNDFLGEVLIDLSST-SHL 127
Query: 118 DEGLVYFPLEKKS 130
D ++PL++++
Sbjct: 128 DNTPRWYPLKEQT 140
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.5 bits (117), Expect = 2e-07
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 23/125 (18%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASY---------RACDPHDSPEW 343
L + I +AR LVP + P+VK+ + + + +PEW
Sbjct: 20 LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79
Query: 344 NQVFALF-HNKNDSVSATLEITVWDSPT---ENFLGGVCFDLSDVPVRDPPDSPLAPQWY 399
NQ + + TLE+TVWD +FLG V DLS D P+WY
Sbjct: 80 NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN-----TPRWY 134
Query: 400 RLEGE 404
L+ +
Sbjct: 135 PLKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.2 bits (98), Expect = 5e-05
Identities = 25/131 (19%), Positives = 46/131 (35%), Gaps = 29/131 (22%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYCV--------------AKYGKKWVRTRTITD 664
G L + IL AR L+P G +D + + RT+ +
Sbjct: 18 GNLIIHILQARNLVPRD----NNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK 73
Query: 665 CFDPRWNEQYTWQVYDPCT----VLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLEN 720
+P WN+ ++ L V V+ ++ F + +G++ I +S+ +
Sbjct: 74 SLNPEWNQTVIYKSISMEQLMKKTLEVTVW-DYDRF------SSNDFLGEVLIDLSSTSH 126
Query: 721 NKVYTTSYPLL 731
YPL
Sbjct: 127 LDNTPRWYPLK 137
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (149), Expect = 6e-12
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKN 76
+L + V+ A+ K SPYV DGQ K+T +P W +PL IV
Sbjct: 7 QLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIV----- 61
Query: 77 MDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+L V++ + + + LG L
Sbjct: 62 TPVSKLHFRVWSHQTL-----KSDVLLGTAAL 88
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (107), Expect = 2e-06
Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 15/129 (11%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
L + + A+ + PYV++ KK C+ +SP+W Q +
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKK-----TEKCNNTNSPKWKQPLTVIVT 62
Query: 353 KNDSVSATLEITVWDSPTEN-FLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNR 411
+ + + + LG D+ + + L L+ +
Sbjct: 63 PVSKL--HFRVWSHQTLKSDVLLGTAALDIYETL--KSNNMKLEEVVVTLQLGGDKEPTE 118
Query: 412 VSGDIQLAV 420
GD+ + +
Sbjct: 119 TIGDLSICL 127
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (95), Expect = 1e-04
Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 13/135 (9%)
Query: 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVA 516
L++TV+ A+ N P V+ + ++++ N+++S W + + +
Sbjct: 8 LQITVISAKLKENKKN---WFGPSPYVEVTV---DGQSKKTEKCNNTNSPKWKQPLTVIV 61
Query: 517 AEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCA 576
+ + D V+LG A + + + + + L+ +
Sbjct: 62 TPVSKLHFRVWSHQTLKSD---VLLGTAALDIYETLKS-NNMKLEEVVVTLQLGGDKEPT 117
Query: 577 RSYCGRIQLKLCLEG 591
+ L +CL+G
Sbjct: 118 ET---IGDLSICLDG 129
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 61.4 bits (148), Expect = 8e-12
Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 11/128 (8%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEP 66
L+V ++ L D G S P+V + +T K + LNP +NE
Sbjct: 11 STQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEE 70
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126
+ + ++ + L+I V++ + N ++G +L S R
Sbjct: 71 FFYDIKHS-DLAKKSLDISVWDYDIG-----KSNDYIGGCQLGISAKGERLKHWYECLKN 124
Query: 127 EKKSVFSW 134
+ K + W
Sbjct: 125 KDKKIERW 132
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.1 bits (111), Expect = 9e-07
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 17/121 (14%)
Query: 298 LFVKIRKARGLVP-----NEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
L V I + L P+VK+ K + +PE+N+ F
Sbjct: 17 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76
Query: 353 KNDSVSATLEITVWDSPT---ENFLGGVCFDLSDV--------PVRDPPDSPLAPQWYRL 401
+D +L+I+VWD +++GG +S D + +W++L
Sbjct: 77 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE-RWHQL 135
Query: 402 E 402
+
Sbjct: 136 Q 136
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.5 bits (86), Expect = 0.002
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 9/73 (12%)
Query: 614 WKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVA-----KYGKKWVRTRTITDCFDP 668
+ G L +GI+ L M +D + K +T+ +P
Sbjct: 10 YSTQQGGLIVGIIRCVHLAAMDANG----YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNP 65
Query: 669 RWNEQYTWQVYDP 681
+NE++ + +
Sbjct: 66 EFNEEFFYDIKHS 78
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 60.9 bits (147), Expect = 9e-12
Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 12/122 (9%)
Query: 295 MMYLFVKIRKARGLVPNEA--PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
M L V ++KA+ E YV ++ + + P W Q F N
Sbjct: 1 MSLLCVGVKKAKFDGAQEKFNTYVTLKVQNVKSTTI------AVRGSQPSWEQDFMFEIN 54
Query: 353 KNDSVSATLEITVWDSPTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNRV 412
+ D T+E+ + +G V L + + +W L+ +A ++ +
Sbjct: 55 RLDLGL-TVEVWNKGLIWDTMVGTVWIPLRTIR---QSNEEGPGEWLTLDSQAIMADSEI 110
Query: 413 SG 414
G
Sbjct: 111 CG 112
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.0 bits (129), Expect = 3e-09
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 17/123 (13%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNM 77
L V V A+ ++ + YV + T R P W + F ++
Sbjct: 4 LCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL--- 56
Query: 78 DCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGL-VYFPLEKKSVFSWIR 136
L +EV+N + +G V + + +EG + L+ +++ +
Sbjct: 57 -DLGLTVEVWNKGLI------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMA--D 107
Query: 137 GEI 139
EI
Sbjct: 108 SEI 110
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.4 bits (117), Expect = 1e-07
Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 21/143 (14%)
Query: 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQV 678
+L +G+ A+ G + + Y K T + P W + + +++
Sbjct: 2 SLLCVGVKKAKFD-------GAQEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEI 53
Query: 679 YDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTL--ENNKVYTTSYPLLVLLRT 736
LTV V++ D +G + I + T+ N + L
Sbjct: 54 NRLDLGLTVEVWNK--------GLIWDTMVGTVWIPLRTIRQSNEEGPGEWLT---LDSQ 102
Query: 737 GLKKMGEIELAVRFVCPSMLPET 759
+ EI +L +
Sbjct: 103 AIMADSEICGTKDPTFHRILLDA 125
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.9 bits (147), Expect = 1e-11
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIA----DFDGQRKRTSTKFRDLNPVWNEPL 67
F + VV + +AR L D Q +S I + +T + L+P ++E
Sbjct: 18 NFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETF 77
Query: 68 EFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
F + L + + R+ ++ +G V +
Sbjct: 78 TFYGIPYTQIQELALHFTILSFDRF-----SRDDIIGEVLI 113
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.0 bits (116), Expect = 2e-07
Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 11/111 (9%)
Query: 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYT 675
+ I ARGL M ++ + K V+TR + DP ++E +T
Sbjct: 19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFT 78
Query: 676 WQVYDP----CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNK 722
+ L + + F D IG++ I +S +E ++
Sbjct: 79 FYGIPYTQIQELALHFTILS-FDRF------SRDDIIGEVLIPLSGIELSE 122
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (102), Expect = 1e-05
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 18/115 (15%)
Query: 298 LFVKIRKARGLVPNEA------PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALF- 350
V I++ARGL + PY+K+ K R P +++ F +
Sbjct: 24 FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKT--RVLRKTLDPAFDETFTFYG 81
Query: 351 HNKNDSVSATLEITVWDSPT---ENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLE 402
L T+ ++ +G V LS + + + E
Sbjct: 82 IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSE------GKMLMNRE 130
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 59.1 bits (142), Expect = 9e-11
Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEP 66
T KL V +++A++L D G S PYV ++K+T+ K LNP +NE
Sbjct: 21 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNES 80
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
F V + + ++ + V + + KN +G+V +
Sbjct: 81 FSFEVPFEQ-IQKVQVVVTVLDYDKI-----GKNDAIGKVFV 116
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.5 bits (125), Expect = 2e-08
Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 24/139 (17%)
Query: 298 LFVKIRKARGLVPNE-----APYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
L V I +A+ L + PYVKI + K+ K +P +N+ F+
Sbjct: 27 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86
Query: 353 KNDSVSATLEITVWDSPT---ENFLGGVCFDLSDVP--------VRDPPDSPLAPQWYRL 401
+ +TV D + +G V + + P P+A QW+ L
Sbjct: 87 FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA-QWHTL 145
Query: 402 EGEASDQNNRVSGDIQLAV 420
+ D LAV
Sbjct: 146 Q-------VEEEVDAMLAV 157
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.3 bits (88), Expect = 0.001
Identities = 18/126 (14%), Positives = 50/126 (39%), Gaps = 10/126 (7%)
Query: 452 PKLWYLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHED 511
P L V ++EA++ ++ L+ P +++ + + ++ ++ ++ + +++E
Sbjct: 22 PTAGKLTVVILEAKN-LKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNES 80
Query: 512 -VFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDE--------RHVAS 562
F V E + +++ K +G V +S + R +
Sbjct: 81 FSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140
Query: 563 KWFPLE 568
+W L+
Sbjct: 141 QWHTLQ 146
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 56.4 bits (135), Expect = 5e-10
Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 26/142 (18%)
Query: 619 GILELGILGARGLLPMKT-------KNGGKGSTDAYCVAKYGK-KWVRTRTITDCFDPRW 670
G+L++ I A L P D Y + +T T P W
Sbjct: 6 GLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAW 65
Query: 671 NEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTL--ENNKVYTTSY 728
++++ V + + + VF + + D + I+ L ++ +
Sbjct: 66 HDEFVTDVCNGRKI-ELAVFHDAPI-------GYDDFVANCTIQFEELLQNGSRHFEDWI 117
Query: 729 PLLVLLRTGLKKMGEIELAVRF 750
L+ G++ + +
Sbjct: 118 D--------LEPEGKVYVIIDL 131
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 52.6 bits (125), Expect = 1e-08
Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 30/140 (21%)
Query: 17 KLVVEVVDARDLLPKDGQ-----------GSSSPYVIADFDGQR-KRTSTKFRDLNPVWN 64
L +++ +A L P PY+ + D R +T+TK + +P W+
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 65 EPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGL-VY 123
+ V + + + E+ V++D + F+ + + + G +
Sbjct: 67 DEFVTDVCNGRKI-----ELAVFHDAPI-----GYDDFVANCTIQFEELLQNGSRHFEDW 116
Query: 124 FPLEKKSVFSWIRGEIGLRI 143
LE + G++ + I
Sbjct: 117 IDLEPE-------GKVYVII 129
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 37.6 bits (86), Expect = 0.002
Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 21/142 (14%)
Query: 456 YLRVTVMEAQDL-----CIAHNLPPLTAPEIR-VKAQLALQSARTRRGSMNNHSSSFHWH 509
L++ + EA L + + P + L + +R + + ++S WH
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66
Query: 510 EDVFFVAAEPFEDSLILLVEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEG 569
++ + L + + D + + + + Q W LE
Sbjct: 67 DEFVTDVCNGRKIELAVFHDAPIGYD---DFVANCTIQFEELLQN--GSRHFEDWIDLEP 121
Query: 570 SCGRGCARSYCGRIQLKLCLEG 591
G++ + + L G
Sbjct: 122 E----------GKVYVIIDLSG 133
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.9 bits (134), Expect = 7e-10
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 21/136 (15%)
Query: 14 TVRKLVVEVVDARDLLP---KDGQGSSSPYVIADFDG---QRKRTSTKFRDLNPVWNEPL 67
+ K V V+ A + D + PYV RKRT D+NPVWNE
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60
Query: 68 EFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127
EFI+ + EI + + + LG S + G++ V F
Sbjct: 61 EFILDPNQENVL---EITLMDANY------VMDETLGTATFTVSSM-KVGEKKEVPFIFN 110
Query: 128 KKSVFSWIRGEIGLRI 143
+ + + + +
Sbjct: 111 QVT-----EMVLEMSL 121
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (128), Expect = 4e-09
Identities = 15/137 (10%), Positives = 38/137 (27%), Gaps = 18/137 (13%)
Query: 621 LELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTIT---DCFDPRWNEQYTWQ 677
+ +L A + + + D Y + + +P WNE + +
Sbjct: 5 FTVVVLRATKVTKGAFGDML-DTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFI 63
Query: 678 VYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTG 737
+ + + D +G VS+++ + +
Sbjct: 64 LDPNQENVLEITLMDANYVMDE-------TLGTATFTVSSMKVGEKKEVPFIF------N 110
Query: 738 LKKMGEIELAVRFVCPS 754
+E+++ V S
Sbjct: 111 QVTEMVLEMSLE-VASS 126
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (125), Expect = 9e-09
Identities = 16/119 (13%), Positives = 35/119 (29%), Gaps = 19/119 (15%)
Query: 298 LFVKIRKARGLVPNEA--------PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFAL 349
V + +A + PYV++ + + R ++
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVEL----FISTTPDSRKRTRHFNNDINPVWNETF 60
Query: 350 FHNKNDSVSATLEITVWDS--PTENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEAS 406
+ + LEIT+ D+ + LG F +S + V + + +
Sbjct: 61 EFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKE-----VPFIFNQVTE 114
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (117), Expect = 1e-07
Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 14/133 (10%)
Query: 457 LRVTVMEAQDLCIAHNLPPLTAPEIRVKAQLALQSARTRRGSMNNHSSSFHWHEDVFFVA 516
V V+ A + L P+ V+ ++ +R N+ + W+E F+
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64
Query: 517 AEPFEDSLILLVEDR-TAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGC 575
E+ L + + D D LG A VSS+ F
Sbjct: 65 DPNQENVLEITLMDANYVMD---ETLGTATFTVSSMKV----GEKKEVPFIFNQV----- 112
Query: 576 ARSYCGRIQLKLC 588
+ L++
Sbjct: 113 -TEMVLEMSLEVA 124
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.6 bits (128), Expect = 5e-09
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 16 RKLVVEVVDARDL--LPKDGQGSSSPYVIADF-----DGQRKRTST-KFRDLNPVWNEPL 67
+L V ++ + L + K+ P VI + D ++T+ NP W+
Sbjct: 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63
Query: 68 EFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
EF V+ P V D + KN F+G+ +
Sbjct: 64 EFEVTVPDLALV---RFMVE-DYDSSS----KNDFIGQSTI 96
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.8 bits (105), Expect = 5e-06
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 25/144 (17%)
Query: 614 WKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDC-FD 667
W+P L + I+ + L + D + + +T IT+ F+
Sbjct: 1 WRP--ERLRVRIISGQQLPKVNKNKNSI--VDPKVIVEIHGVGRDTGSRQTAVITNNGFN 56
Query: 668 PRWNEQYTWQVYDPCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTS 727
PRW+ ++ ++V P L + +++ + IG+ I + K
Sbjct: 57 PRWDMEFEFEVTVPDLALVRFMVEDYDSS------SKNDFIGQSTIP---WNSLKQGYRH 107
Query: 728 YPLLVLLRTGLKKMGEIELAVRFV 751
LL K + A FV
Sbjct: 108 VHLL------SKNGDQHPSATLFV 125
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.7 bits (128), Expect = 5e-09
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEP 66
T L V ++ A +L D G S PYV A ++++TS K LNP +NE
Sbjct: 16 LPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEA 75
Query: 67 LEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
L F V+ P++++ L I V + N +G ++
Sbjct: 76 LVFDVA-PESVENVGLSIAVVDYDCI-----GHNEVIGVCRV 111
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.0 bits (108), Expect = 3e-06
Identities = 24/124 (19%), Positives = 36/124 (29%), Gaps = 18/124 (14%)
Query: 298 LFVKIRKARGLVPNEA-----PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHN 352
L V I KA L + PYVK S ++ K +P +N+
Sbjct: 22 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 81
Query: 353 KNDSVSATLEITVWDSPT---ENFLGGVCFDLSDV---------PVRDPPDSPLAPQWYR 400
+ L I V D +G + P P+ W++
Sbjct: 82 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE-HWHQ 140
Query: 401 LEGE 404
L E
Sbjct: 141 LVEE 144
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 53.0 bits (126), Expect = 7e-09
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 12 QFTVRKLVVEVVDARDLLPKDGQGSSSPYVIA---DFDGQRKRTSTKFRDLNPVWNEPLE 68
+ +LVV ++ A DL KD G S PYV ++ +T + LNP++NE +
Sbjct: 14 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQ 73
Query: 69 FIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL-CGSQFARRGDEGLVYFPLE 127
F V + +L VY+ R+ ++ +G+V L + A + + ++ +
Sbjct: 74 FSVPLAELAQR-KLHFSVYDFDRF-----SRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127
Query: 128 K 128
+
Sbjct: 128 E 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 9/111 (8%)
Query: 298 LFVKIRKARGL---VPNEAPYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKN 354
L V+I +A L N ++ + K + +P +N+ F
Sbjct: 20 LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 79
Query: 355 DSVSATLEITVWDSPT---ENFLGGVCFDLSDVPVRDPPDSPLAPQWYRLE 402
+ L +V+D + +G V D PPD PL W +
Sbjct: 80 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPL---WRDIL 127
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.6 bits (86), Expect = 0.001
Identities = 25/122 (20%), Positives = 35/122 (28%), Gaps = 29/122 (23%)
Query: 580 CGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNG 639
CGRI L + L + IL A L P K NG
Sbjct: 4 CGRISFALR-------------------------YLYGSDQLVVRILQALDL-PAKDSNG 37
Query: 640 GKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPC---TVLTVGVFDNWRMF 696
+ KK +T+ +P +NE + + V L V+D R
Sbjct: 38 FSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS 97
Query: 697 AD 698
Sbjct: 98 RH 99
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.7 bits (118), Expect = 8e-08
Identities = 12/137 (8%), Positives = 38/137 (27%), Gaps = 24/137 (17%)
Query: 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDGQR-----KRTSTKFRDLNPVWNEPLEFIV 71
++ + L +D +S P+ K K + P W + +
Sbjct: 6 RISFNSYELGSLQAEDD--ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI 63
Query: 72 SDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSV 131
+ ++I + + + + + + + L+
Sbjct: 64 Y-----EGRVIQIVLMRAAEDPM--SEVTVGVSVLAERCKKNNGKAE---FWLDLQP--- 110
Query: 132 FSWIRGEIGLRIYYYDE 148
+ ++ + + Y+ E
Sbjct: 111 ----QAKVLMCVQYFLE 123
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.3 bits (109), Expect = 1e-06
Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 14/108 (12%)
Query: 314 PYVKIRTSSHYKKSKLASYRACDPHDSPEWNQVFALFHNKNDSVSATLEITVWDSPTENF 373
P+ ++ + + P PEW + + ++I + E+
Sbjct: 26 PFCAVKMKEALTTDRGKTLVQKKPTMYPEWKST----FDAHIYEGRVIQIVLMR-AAEDP 80
Query: 374 LGGVCFDLSDVPVRDPPDSPLAPQWYRLEGEASDQNNRVSGDIQLAVW 421
+ V +S + R ++ A W L+ + + V
Sbjct: 81 MSEVTVGVSVLAERCKKNNGKAEFWLDLQP---------QAKVLMCVQ 119
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.9 bits (108), Expect = 2e-06
Identities = 10/114 (8%), Positives = 29/114 (25%), Gaps = 20/114 (17%)
Query: 642 GSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMF 696
++ +C K + P W + + V+ + +
Sbjct: 22 DASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHI-YEGRVIQIVLMRAAEDP 80
Query: 697 ADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750
+ +G + +NN L+ ++ + V++
Sbjct: 81 ------MSEVTVGVSVLAERCKKNNGKAEFWLD--------LQPQAKVLMCVQY 120
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.4 bits (109), Expect = 1e-06
Identities = 19/131 (14%), Positives = 39/131 (29%), Gaps = 20/131 (15%)
Query: 9 PQQQFTVR------KLVVEVVDARDLLPKDGQGSSSPYVIA----DFDGQRKRTSTKFRD 58
P+ + + +L V ++A + G YV +T+ K R
Sbjct: 13 PKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQ 69
Query: 59 LNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGD 118
L+ W E L +++ + + S R+ L G+
Sbjct: 70 LHTTWEEGLVLPLAEEELPTA----TLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAA 125
Query: 119 EGLVYFPLEKK 129
+ + L+
Sbjct: 126 Q---WGELKTS 133
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 1e-04
Identities = 17/166 (10%), Positives = 30/166 (18%), Gaps = 40/166 (24%)
Query: 569 GSCGRGCARSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGA 628
GS G + + ++ L + L + L A
Sbjct: 1 GSSGSSGSWNQAPKLHYCLD-------------------------YDCQKAELFVTRLEA 35
Query: 629 RGLLPMKTKNGGKGSTDAYCVAKY----GKKWVRTRTITDCFDPRWNEQYTWQVYDPCTV 684
G D Y G +T W E + +
Sbjct: 36 VTSNH-------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELP 88
Query: 685 LTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPL 730
G++R+ + L
Sbjct: 89 TATLTL----TLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGEL 130
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (96), Expect = 8e-05
Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 12/110 (10%)
Query: 298 LFVKIRKARGLVPNEA-PYVKIRTSSHYKKSKLASYRACDPHD---SPEWNQVFALFHNK 353
L + + + L YV++ K P +P W + +F
Sbjct: 3 LSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKI 62
Query: 354 NDSVSATLEITVWDSPTENFLGGVCFDLSD-------VPVRDPPDSPLAP 396
A+L + V + FLG ++ + + + PL
Sbjct: 63 LMPELASLRVAVMEEG-NKFLGHRIIPINALNSGYHHLCLHSESNMPLTM 111
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (94), Expect = 1e-04
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 22/99 (22%)
Query: 18 LVVEVVDARDLLPKDGQGSSSPYVIADFDG--------QRKRTSTKFRDLNPVWNEPLEF 69
L + V+ + L + YV + G R + S +NPVW E F
Sbjct: 3 LSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKE-EPF 57
Query: 70 IVSDPKNMDCEELEIEVYNDKRYCNGSGRKNHFLGRVKL 108
+ + L + V N FLG +
Sbjct: 58 VFEKILMPELASLRVAVME---------EGNKFLGHRII 87
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1006 | |||
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.87 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.81 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.8 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.8 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.76 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.76 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.74 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.73 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.73 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.73 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.73 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.72 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.72 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.7 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.69 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.68 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.67 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.65 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.65 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.64 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.64 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.64 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.63 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.61 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.59 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.59 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.59 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.57 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.56 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.56 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.54 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.53 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.52 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.5 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.5 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.47 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.43 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.36 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.33 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.29 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 92.13 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 88.15 |
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.9e-22 Score=188.40 Aligned_cols=123 Identities=28% Similarity=0.454 Sum_probs=110.0
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCC
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRM 695 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~ 695 (1006)
+++|.|+|+|++|+||++++ . .|++||||++.++++..||+++.++.||.|||+|.|.+.++...|.|+|||++.+
T Consensus 3 ~~~G~L~V~v~~A~~L~~~d---~-~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~ 78 (126)
T d2ep6a1 3 KDVGILQVKVLKAADLLAAD---F-SGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGD 78 (126)
T ss_dssp CCSEEEEEEEEEEESCCCSS---S-SSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETT
T ss_pred CccEEEEEEEEEeECCCCCC---C-CCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCC
Confidence 47899999999999998854 4 8899999999999999999999999999999999999999889999999999988
Q ss_pred CcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEec
Q 042999 696 FADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFVC 752 (1006)
Q Consensus 696 ~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~ 752 (1006)
+ +|++||++.|+|+++..+. ..||.|......+. ..|+|+|++.|.+
T Consensus 79 ~-------~d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~-~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 79 K-------PPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQA-FKGVIYLEMDLIY 125 (126)
T ss_dssp E-------EEEECCBCEEEGGGCCSSC--CEECCCBCSCTTSC-CSSEEEEEEEEEE
T ss_pred c-------CcceEEEEEEEHHHCCCCC--ceEEEccccCCCCc-eeEEEEEEEEEEE
Confidence 7 7899999999999998876 68999976655543 3499999999875
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=4.2e-20 Score=172.23 Aligned_cols=122 Identities=30% Similarity=0.492 Sum_probs=108.3
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYC 93 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~ 93 (1006)
..|.|+|+|++|++|+.++..|++||||++.+++++++|++++++.||.|||+|.|.+... ...|.|+|||++.+
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~----~~~L~i~V~d~~~~- 78 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDI----HDVLEVTVFDEDGD- 78 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCT----TCEEEEEEEEEETT-
T ss_pred ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEecc----CceeEEEEEEccCC-
Confidence 4689999999999999999999999999999999999999999999999999999999875 45899999999998
Q ss_pred CCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 94 NGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 94 ~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
++|++||++.++++++ ..+. .+|+.|......+..+|+|+|++.+..
T Consensus 79 ----~~d~~lG~~~i~l~~l-~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 79 ----KPPDFLGKVAIPLLSI-RDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY 125 (126)
T ss_dssp ----EEEEECCBCEEEGGGC-CSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred ----cCcceEEEEEEEHHHC-CCCC--ceEEEccccCCCCceeEEEEEEEEEEE
Confidence 7899999999999996 3332 469999877666677899999999874
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.80 E-value=8.1e-20 Score=172.85 Aligned_cols=123 Identities=23% Similarity=0.304 Sum_probs=106.5
Q ss_pred CCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccC-CCCCeeccEEEEEEeCCCcEEEEEEEECCC
Q 042999 616 PPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITD-CFDPRWNEQYTWQVYDPCTVLTVGVFDNWR 694 (1006)
Q Consensus 616 ~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~-~~nP~wne~~~~~v~~~~~~l~i~v~d~~~ 694 (1006)
.+.|.|+|+|++|++|++++ . .|++||||++.++++..+|+++++ ++||.|||+|.|.+.++...|+|+|||+|.
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d---~-~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~ 82 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDAD---F-LNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCC---S-SCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred CCcEEEEEEEEEeeCCCCCC---C-CCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecC
Confidence 47899999999999998854 5 889999999999999999999875 899999999999999988899999999998
Q ss_pred CCcCCCCCCCCceeEEEEEEcccccC-CceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 695 MFADASEERPDYRIGKIRIRVSTLEN-NKVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 695 ~~~~~~~~~~d~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
++ +|++||.+.|+|.++.. +.....||+|... + +..|+|+|++.|.+.
T Consensus 83 ~~-------~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~---~-~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 83 GT-------EDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---E-EYKGEIWVALSFKPS 131 (136)
T ss_dssp CT-------TTCCSEEEEEESHHHHHHSEEEEEEEEEEET---T-EEEEEEEEEEEEEEC
T ss_pred CC-------CCCEEEEEEEEhHHhcccCCcCcEEEEecCC---C-ccCEEEEEEEEEEeC
Confidence 87 89999999999998754 4445679988542 2 235999999999874
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.80 E-value=2e-19 Score=170.11 Aligned_cols=125 Identities=20% Similarity=0.244 Sum_probs=110.0
Q ss_pred CcccEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcC-CCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 13 FTVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKF-RDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 13 ~~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
+..|.|+|+|++|++|+.++..|++||||+++++++.++|++++ +++||+|||+|.|.+... ...|+|+|||++.
T Consensus 7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~----~~~L~v~V~d~d~ 82 (136)
T d1wfja_ 7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG----TTELKAKIFDKDV 82 (136)
T ss_dssp CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS----CCEEEEEECCSSS
T ss_pred CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCc----cceEEEEEEEecC
Confidence 45789999999999999999889999999999999999999987 689999999999999874 4579999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEecC
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYDEL 149 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~~ 149 (1006)
+ ++|++||++.|+|.++...+.....|+.|...+ +.+|+|++++.|.+..
T Consensus 83 ~-----~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~---~~~G~i~l~l~~~p~~ 132 (136)
T d1wfja_ 83 G-----TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE---EYKGEIWVALSFKPSG 132 (136)
T ss_dssp C-----TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETT---EEEEEEEEEEEEEECC
T ss_pred C-----CCCCEEEEEEEEhHHhcccCCcCcEEEEecCCC---ccCEEEEEEEEEEeCC
Confidence 8 789999999999999766666567899987643 4589999999998865
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=7.9e-19 Score=163.69 Aligned_cols=119 Identities=16% Similarity=0.220 Sum_probs=101.6
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC---EEEEeecccCCCCCeeccEEEEEEeCCC-cEEEEEEEECC
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK---KWVRTRTITDCFDPRWNEQYTWQVYDPC-TVLTVGVFDNW 693 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~---~~~rT~~~~~~~nP~wne~~~~~v~~~~-~~l~i~v~d~~ 693 (1006)
.+.|+|+|++|+||+.....|. .|++||||++.+++ +..||+++.++.||.|||+|.|.+.++. ..|.|+|||+|
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~-~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d 80 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDM-LDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN 80 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHH-HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred CcEEEEEEEEccCCCCcccccc-CCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECC
Confidence 3689999999999987544445 68899999999974 6789999999999999999999998754 58999999998
Q ss_pred CCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 694 RMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 694 ~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
.. +|++||.+.|+|+++..+...+.||+|... ..|+|++++++.
T Consensus 81 ~~--------~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~------~~g~i~~~l~~~ 124 (126)
T d1rlwa_ 81 YV--------MDETLGTATFTVSSMKVGEKKEVPFIFNQV------TEMVLEMSLEVA 124 (126)
T ss_dssp SS--------CCEEEEEEEEEGGGSCTTCEEEEEEEETTT------EEEEEEEEEECC
T ss_pred CC--------CCCeEEEEEEEHHHccCCCeEEEEEEccCC------CeEEEEEEEEEE
Confidence 64 589999999999999999888999999431 248888888764
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.76 E-value=2.9e-18 Score=161.41 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=100.9
Q ss_pred cEEEEEEEeeccCCccCcc--------CCCCCCCCCeEEEEEECCEEE-EeecccCCCCCeeccEEEEEEeCCCcEEEEE
Q 042999 618 VGILELGILGARGLLPMKT--------KNGGKGSTDAYCVAKYGKKWV-RTRTITDCFDPRWNEQYTWQVYDPCTVLTVG 688 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~--------~d~~~g~sdpyv~v~~~~~~~-rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~ 688 (1006)
.|.|+|+|++|++|++++. ... .+.+||||++.++++.+ +|+++.++.||.|||+|.|++.+. ..|+|+
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~-~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~~-~~l~i~ 82 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQ-TFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA 82 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCC-CCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCC-CCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEecC-CceEEE
Confidence 5999999999999998641 112 67899999999998664 899999999999999999999754 679999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCC--ceEeeEEEeeeeccCCcccccEEEEEEEEecC
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENN--KVYTTSYPLLVLLRTGLKKMGEIELAVRFVCP 753 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~~~ 753 (1006)
|||++.++ +|++||.++|+|.++..+ ...+.||+|. +.|+|++.+.|++.
T Consensus 83 V~d~~~~~-------~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------p~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 83 VFHDAPIG-------YDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EEECCSSS-------SCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred EEEecCCC-------CceeEEEEEEEHHHhhhcCCcceeEEEeCC--------CCcEEEEEEEEEeC
Confidence 99999887 899999999999998654 3467899994 24999999999864
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.74 E-value=5.7e-18 Score=158.96 Aligned_cols=103 Identities=24% Similarity=0.398 Sum_probs=90.7
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-----CCEEEEeecccCCCCCeeccEEEEEEeCC--CcEEEEEEEE
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYTWQVYDP--CTVLTVGVFD 691 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-----~~~~~rT~~~~~~~nP~wne~~~~~v~~~--~~~l~i~v~d 691 (1006)
+.|.|+|++|+||++++ . .|.+||||++.+ +....||+++.+|.||.|||.|.|++..+ ...|.|+|||
T Consensus 15 ~~L~V~V~~a~~L~~~d---~-~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d 90 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPMD---P-NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWD 90 (132)
T ss_dssp SEEEEEEEEEESCCCCS---T-TSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEE
T ss_pred CEEEEEEEeeeCCCCCC---C-CCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEe
Confidence 57999999999999865 4 788999999998 56688999999999999999999998764 3579999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 692 NWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 692 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
+|.++ +|++||.+.|+|.++..+. .++||+|.+.
T Consensus 91 ~d~~~-------~d~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 124 (132)
T d1a25a_ 91 WDLTS-------RNDFMGSLSFGISELQKAG-VDGWFKLLSQ 124 (132)
T ss_dssp CCSSS-------CCEEEEEEEEEHHHHTTCC-EEEEEECBCH
T ss_pred cCCCC-------CCcEeEEEEEeHHHcCCCC-CCeEEECCCC
Confidence 99987 8999999999999997654 5789999764
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=5.5e-18 Score=157.85 Aligned_cols=118 Identities=26% Similarity=0.371 Sum_probs=100.6
Q ss_pred ccEEEEEEEEecCCCCC---CCCCCCCcEEEEEECC---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 15 VRKLVVEVVDARDLLPK---DGQGSSSPYVIADFDG---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~---~~~g~~dPyv~v~~~~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
.+.|+|+|++|+||+.. |..|++||||++.+++ ++++|+++.++.||.|||+|.|.+.... ...|.|+|||
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~---~~~L~v~V~d 78 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQ---ENVLEITLMD 78 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTS---CCEEEEEEEE
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcc---cCcEEEEEEE
Confidence 46899999999999874 3357899999999964 6789999999999999999999997653 5689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
++.. +|++||++.++|+++ ..+.....||+|.+.+ +|+|++.+++.+
T Consensus 79 ~d~~------~d~~lG~~~i~L~~l-~~~~~~~~~~~L~~~~-----~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 79 ANYV------MDETLGTATFTVSSM-KVGEKKEVPFIFNQVT-----EMVLEMSLEVAS 125 (126)
T ss_dssp CCSS------CCEEEEEEEEEGGGS-CTTCEEEEEEEETTTE-----EEEEEEEEECCC
T ss_pred CCCC------CCCeEEEEEEEHHHc-cCCCeEEEEEEccCCC-----eEEEEEEEEEEe
Confidence 9887 689999999999996 5666777899997643 799998888754
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.8e-17 Score=155.20 Aligned_cols=122 Identities=22% Similarity=0.305 Sum_probs=100.5
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
+.|.|+|++|++|+.++..+.+||||++.++++.++|++++++.||.|||.|.|.+.. ...|.|+|||++.+
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-----~~~l~~~V~d~d~~--- 77 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-----VSKLHFRVWSHQTL--- 77 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-----TCEEEEEEEECCSS---
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-----cceeEEEEEEccCC---
Confidence 6799999999999998888899999999999999999999999999999999999876 35799999999999
Q ss_pred CCCCCceeEEEEEeCeeeeeeCCc--ee--EEEEceecCCceeeeEEEEEEEEEEe
Q 042999 96 SGRKNHFLGRVKLCGSQFARRGDE--GL--VYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~~~~--~~--~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
++|++||++.++|.+++..... .. .|+.|..........|+|.+.+.+..
T Consensus 78 --~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~ 131 (133)
T d2nq3a1 78 --KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ 131 (133)
T ss_dssp --SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred --CCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence 7899999999999987543221 22 34555554444566899999887654
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.5e-17 Score=155.68 Aligned_cols=121 Identities=14% Similarity=0.168 Sum_probs=95.7
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCc
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFA 697 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 697 (1006)
-+.|.|+|++|++|+..+ . .+++||||++.+|++.+||++++++.||.|||.|.|++.+ .+.|+|+|||+|.++
T Consensus 5 ~~~L~v~v~~A~~~~~~~---~-~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~- 78 (133)
T d2nq3a1 5 KSQLQITVISAKLKENKK---N-WFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLK- 78 (133)
T ss_dssp CEEEEEEEEEEEECCCC------CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSS-
T ss_pred ceEEEEEEEEeECCCcCC---C-CCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCC-
Confidence 378999999999997743 3 6789999999999999999999999999999999999864 678999999999987
Q ss_pred CCCCCCCCceeEEEEEEccccc---CCceEeeEEEeeeec-cCCcccccEEEEEEEE
Q 042999 698 DASEERPDYRIGKIRIRVSTLE---NNKVYTTSYPLLVLL-RTGLKKMGEIELAVRF 750 (1006)
Q Consensus 698 ~~~~~~~d~~lG~~~i~l~~l~---~~~~~~~~~~L~~~~-~~g~~~~G~l~l~~~~ 750 (1006)
+|++||++.|+|.++. .+.....+++|.-.. ..+....|+|.+.+.+
T Consensus 79 ------~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~ 129 (133)
T d2nq3a1 79 ------SDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDG 129 (133)
T ss_dssp ------CCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEES
T ss_pred ------CCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEee
Confidence 8999999999999874 233223444443222 2344455988877654
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=2e-17 Score=154.65 Aligned_cols=120 Identities=19% Similarity=0.240 Sum_probs=94.3
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-----CCEEEEeecccCC-CCCeeccEEEEEEeCC-CcEEEEEEEE
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDC-FDPRWNEQYTWQVYDP-CTVLTVGVFD 691 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-----~~~~~rT~~~~~~-~nP~wne~~~~~v~~~-~~~l~i~v~d 691 (1006)
..|+|+|++|++|+..+ .+. +|++||||++++ +.+..||++++++ +||.|||+|.|.+..+ ...|.|+|||
T Consensus 4 ~~l~V~Vi~a~~L~~~~-~~~-~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D 81 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVN-KNK-NSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED 81 (131)
T ss_dssp EEEEEEEEEEESCCCCC-------CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred EEEEEEEEEeeCCCCCC-CCC-CCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEE
Confidence 47999999999997644 345 788999999998 3578899998765 7999999999998764 4579999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 692 NWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 692 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
+|..+ +|++||.+.|+|+.+..| .+|++|.+...... ..++|.+.+.+.
T Consensus 82 ~d~~~-------~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~-~~~~L~v~i~~~ 130 (131)
T d1qasa2 82 YDSSS-------KNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQH-PSATLFVKISIQ 130 (131)
T ss_dssp CCTTT-------CCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEE-EEEEEEEEEEEE
T ss_pred ecCCC-------CCcEEEEEEEEEeccCCC---CEEEECCCCCcCCC-CCCEEEEEEEEE
Confidence 99887 899999999999999876 46899977543222 237777777764
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.72 E-value=2e-17 Score=155.62 Aligned_cols=117 Identities=20% Similarity=0.324 Sum_probs=101.0
Q ss_pred ccEEEEEEEEecCCCCCC-----------CCCCCCcEEEEEECCeE-EEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceE
Q 042999 15 VRKLVVEVVDARDLLPKD-----------GQGSSSPYVIADFDGQR-KRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEEL 82 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~-----------~~g~~dPyv~v~~~~~~-~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L 82 (1006)
.|.|+|+|++|++|++++ ..+.+||||++.++++. .+|++++++.||.|||.|.|.+.. ...|
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-----~~~l 79 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-----GRKI 79 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-----ECEE
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-----CCce
Confidence 589999999999998753 36788999999999866 689999999999999999999976 3589
Q ss_pred EEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCC-ceeEEEEceecCCceeeeEEEEEEEEEEec
Q 042999 83 EIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGD-EGLVYFPLEKKSVFSWIRGEIGLRIYYYDE 148 (1006)
Q Consensus 83 ~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~-~~~~w~~L~~~~~~~~~~G~i~l~~~~~~~ 148 (1006)
.|+|||++.+ ++|++||.+.+++++++..+. ....|++|++ +|+|++.+.+.+.
T Consensus 80 ~i~V~d~~~~-----~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p-------~G~v~l~v~~~~~ 134 (136)
T d1gmia_ 80 ELAVFHDAPI-----GYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-------EGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEECCSS-----SSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-------SCEEEEEEEEEEE
T ss_pred EEEEEEecCC-----CCceeEEEEEEEHHHhhhcCCcceeEEEeCCC-------CcEEEEEEEEEeC
Confidence 9999999998 789999999999999866553 4568999974 6899999988765
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.72 E-value=2.6e-17 Score=151.69 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=93.3
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCEEEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCCCCc
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKKWVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFA 697 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~~~~ 697 (1006)
.+.|.|+|++|++|.+ .+++||||++++++...+|.+++ +.||.|||.|.|++.++...|.|+|||++..
T Consensus 1 ~~~L~V~v~~a~~l~~-------~~~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-- 70 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGA-------QEKFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-- 70 (128)
T ss_dssp CEEEEEEEEEEECSSC-------GGGCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS--
T ss_pred CeEEEEEEEEEECCCC-------CCCcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc--
Confidence 3689999999999987 34689999999999999999886 5599999999999999999999999999875
Q ss_pred CCCCCCCCceeEEEEEEcccccCC--ceEeeEEEeeeecc------CCc--ccccEEEEEEEE
Q 042999 698 DASEERPDYRIGKIRIRVSTLENN--KVYTTSYPLLVLLR------TGL--KKMGEIELAVRF 750 (1006)
Q Consensus 698 ~~~~~~~d~~lG~~~i~l~~l~~~--~~~~~~~~L~~~~~------~g~--~~~G~l~l~~~~ 750 (1006)
+|++||++.|+|+++..+ .....||+|..... .|. .....|.+.++|
T Consensus 71 ------~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 71 ------WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 127 (128)
T ss_dssp ------CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred ------CCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence 589999999999998643 23468999965321 111 123667777766
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=5.8e-17 Score=154.22 Aligned_cols=103 Identities=25% Similarity=0.320 Sum_probs=91.5
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE---CCEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY---GKKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVFD 691 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~---~~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~d 691 (1006)
.+.|+|+|++|+||++++ . .|.+||||++.+ +.+..+|++++++.||.|||.|.|++.. ....|.|+|||
T Consensus 33 ~~~L~V~V~~a~~L~~~~---~-~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d 108 (143)
T d1rsya_ 33 NNQLLVGIIQAAELPALD---M-GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYD 108 (143)
T ss_dssp TTEEEEEEEEEESCCCCS---T-TSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEE
T ss_pred CCEEEEEEEEccCCCCCC---C-CCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEE
Confidence 358999999999998854 4 788999999998 5667899999999999999999998864 35689999999
Q ss_pred CCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 692 NWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 692 ~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
++.++ ++++||.+.|+|.++..+....+||+|.
T Consensus 109 ~d~~~-------~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 109 FDRFS-------KHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp CCSSS-------CCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred cCCCC-------CCcEEEEEEEEchhccCCCCCccEEeCC
Confidence 99887 7899999999999998888888999995
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=2.8e-16 Score=146.80 Aligned_cols=119 Identities=20% Similarity=0.301 Sum_probs=94.5
Q ss_pred cEEEEEEEEecCCCC--CCCCCCCCcEEEEEEC-----CeEEEeeCcCC-CCCCeeeeEEEEEeeCCCCCCCceEEEEEE
Q 042999 16 RKLVVEVVDARDLLP--KDGQGSSSPYVIADFD-----GQRKRTSTKFR-DLNPVWNEPLEFIVSDPKNMDCEELEIEVY 87 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~--~~~~g~~dPyv~v~~~-----~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~~~~~L~i~V~ 87 (1006)
..|.|+|++|++|+. ++.++++||||++++. .++++|+++++ ++||.|||+|.|.+.... ...|.|+||
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~---~~~L~~~V~ 80 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD---LALVRFMVE 80 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGG---GCEEEEEEE
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcch---hceEEEEEE
Confidence 479999999999975 4557889999999993 47789998764 579999999999887654 457999999
Q ss_pred eCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecCCceeeeEEEEEEEEEE
Q 042999 88 NDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKSVFSWIRGEIGLRIYYY 146 (1006)
Q Consensus 88 d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~ 146 (1006)
|+|.. ++|++||++.++|+.+ .. ...|++|.+..+..-..++|.+++.+.
T Consensus 81 D~d~~-----~~d~~iG~~~i~l~~l-~~---g~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 81 DYDSS-----SKNDFIGQSTIPWNSL-KQ---GYRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp ECCTT-----TCCEEEEEEEEEGGGB-CC---EEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EecCC-----CCCcEEEEEEEEEecc-CC---CCEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 99999 7899999999999986 33 346999987665555578888888875
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.68 E-value=9.4e-17 Score=150.52 Aligned_cols=106 Identities=28% Similarity=0.487 Sum_probs=91.2
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEE-----CCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~-----~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|+||+.++..|.+||||++++ +..+++|+++++|.||+|||+|.|.+..... ...|.|+|||+
T Consensus 14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~--~~~L~i~V~d~ 91 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK--DRRLSVEIWDW 91 (132)
T ss_dssp SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGG--GCEEEEEEEEC
T ss_pred CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEcccc--CCEEeEEEEec
Confidence 4689999999999999999999999999999 3467899999999999999999999876421 45799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceec
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~ 129 (1006)
|.+ ++|++||++.++++++ .. ....+||+|.+.
T Consensus 92 d~~-----~~d~~iG~~~i~l~~l-~~-~~~~~W~~L~~~ 124 (132)
T d1a25a_ 92 DLT-----SRNDFMGSLSFGISEL-QK-AGVDGWFKLLSQ 124 (132)
T ss_dssp CSS-----SCCEEEEEEEEEHHHH-TT-CCEEEEEECBCH
T ss_pred CCC-----CCCcEeEEEEEeHHHc-CC-CCCCeEEECCCC
Confidence 998 7899999999999986 32 235689999753
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=1.3e-17 Score=158.78 Aligned_cols=104 Identities=25% Similarity=0.359 Sum_probs=89.3
Q ss_pred EEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC--------------EEEEeecccCCCCCeeccEEEEEEeC----
Q 042999 619 GILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK--------------KWVRTRTITDCFDPRWNEQYTWQVYD---- 680 (1006)
Q Consensus 619 g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~--------------~~~rT~~~~~~~nP~wne~~~~~v~~---- 680 (1006)
|.|.|+|++|+||++++ . .|.+||||++.+.+ ...||++++++.||.|||.|.|.+..
T Consensus 18 ~~L~V~V~~A~~L~~~d---~-~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~ 93 (142)
T d1rh8a_ 18 GNLIIHILQARNLVPRD---N-NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQL 93 (142)
T ss_dssp TEEEEEEEEEESCCCCS---S-SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHH
T ss_pred CEEEEEEEEeECCCCcC---C-CCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeeccccc
Confidence 68999999999999864 4 78899999999831 12479999999999999999998543
Q ss_pred CCcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeee
Q 042999 681 PCTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVL 733 (1006)
Q Consensus 681 ~~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 733 (1006)
....|.|+|||+|.++ +|++||.+.|+|.++..+.....||+|..+
T Consensus 94 ~~~~L~i~V~d~d~~~-------~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~ 139 (142)
T d1rh8a_ 94 MKKTLEVTVWDYDRFS-------SNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TTCEEEEEEEEECSSS-------CEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred CCCEEEEEEEEecCCC-------CCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence 4568999999999887 889999999999999877777899999764
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=1.9e-16 Score=147.87 Aligned_cols=105 Identities=22% Similarity=0.208 Sum_probs=86.3
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE---CCEEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY---GKKWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVGVF 690 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~---~~~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~v~ 690 (1006)
..+.|.|+|++|+||++++ . .|.+||||++.+ +.+..||++++++.||.|||+|.|.+... ...|.|+||
T Consensus 16 ~~~~L~V~V~~a~~L~~~~---~-~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~ 91 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAKD---S-NGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVY 91 (130)
T ss_dssp SSCEEEEEEEEEECCCCCS---T-TSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEE
T ss_pred CCCEEEEEEEeeeCCcccc---C-CCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEE
Confidence 4579999999999998854 4 788999999998 35678999999999999999999998653 457999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEccc-ccCC-ceEeeEEEeee
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVST-LENN-KVYTTSYPLLV 732 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~-l~~~-~~~~~~~~L~~ 732 (1006)
|++.++ +|++||.+.|++.. +... .....||+|..
T Consensus 92 d~~~~~-------~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~ 128 (130)
T d1dqva1 92 DFDRFS-------RHDLIGQVVLDNLLELAEQPPDRPLWRDILE 128 (130)
T ss_dssp ECCSSS-------CCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred EcCCCC-------CCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence 999887 89999999998653 3222 22357999964
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=1.8e-16 Score=147.94 Aligned_cols=110 Identities=26% Similarity=0.430 Sum_probs=90.9
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC---CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD---GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
..+.|.|+|++|+||+.++..|.+||||++++. .++++|++++++.||+|||+|.|.+.... .....|.|+|||++
T Consensus 16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~-~~~~~L~v~V~d~~ 94 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAE-LAQRKLHFSVYDFD 94 (130)
T ss_dssp SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGG-GSSCCCEEEEEECC
T ss_pred CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHH-cCCCeEEEEEEEcC
Confidence 356899999999999999999999999999993 46699999999999999999999986642 22567999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCee-eeeeCCceeEEEEceec
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQ-FARRGDEGLVYFPLEKK 129 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~-l~~~~~~~~~w~~L~~~ 129 (1006)
.+ ++|++||++.+++.. +.........|++|.+.
T Consensus 95 ~~-----~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~~ 129 (130)
T d1dqva1 95 RF-----SRHDLIGQVVLDNLLELAEQPPDRPLWRDILEG 129 (130)
T ss_dssp SS-----SCCCEEEEEECCCTTGGGSSCSSCCCCEECBCC
T ss_pred CC-----CCCceEEEEEECchhhhhcCCCCCcEEEecccC
Confidence 98 789999999998543 23333344569999864
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=7.1e-16 Score=141.99 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=85.6
Q ss_pred cEEEEEEEEecCCCCCCCCCCCCcEEEEEECCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCCCCCC
Q 042999 16 RKLVVEVVDARDLLPKDGQGSSSPYVIADFDGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKRYCNG 95 (1006)
Q Consensus 16 ~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~ 95 (1006)
+.|.|+|++|++|.+++ ++||||++.+++++.+|.+++ +.||+|||+|.|.+..+ ...|.|+|||++..
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~----~~~L~v~V~d~~~~--- 70 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRL----DLGLTVEVWNKGLI--- 70 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCC----SSEEEEEEEECCSS---
T ss_pred eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccc----cceEEEEEEeCCCc---
Confidence 47999999999998865 689999999999999999886 55999999999999876 46899999999887
Q ss_pred CCCCCceeEEEEEeCeeeeeeCC-ceeEEEEceec
Q 042999 96 SGRKNHFLGRVKLCGSQFARRGD-EGLVYFPLEKK 129 (1006)
Q Consensus 96 ~~~~d~~lG~~~v~l~~l~~~~~-~~~~w~~L~~~ 129 (1006)
+|++||++.|+|+++...+. ...+|++|...
T Consensus 71 ---~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~ 102 (128)
T d2cjta1 71 ---WDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQ 102 (128)
T ss_dssp ---CEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred ---CCcceEEEEEEehhhccCCCCCCCeeEECCcc
Confidence 68999999999999765443 34589999754
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=3.3e-16 Score=148.84 Aligned_cols=107 Identities=26% Similarity=0.405 Sum_probs=92.2
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEE---CCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADF---DGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~---~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
.+.|+|+|++|+||+.++..|.+||||++++ +.++++|++++++.||+|||+|.|.+.... .....|.|+|||++.
T Consensus 33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~-l~~~~L~i~V~d~d~ 111 (143)
T d1rsya_ 33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE-LGGKTLVMAVYDFDR 111 (143)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHH-HTTCEEEEEEEECCS
T ss_pred CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeec-cCCceEEEEEEEcCC
Confidence 4689999999999999998999999999999 356689999999999999999999876431 225689999999999
Q ss_pred CCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
+ +++++||++.++|+++ ..+....+|++|+.
T Consensus 112 ~-----~~~~~iG~~~i~L~~~-~~~~~~~~W~~L~s 142 (143)
T d1rsya_ 112 F-----SKHDIIGEFKVPMNTV-DFGHVTEEWRDLQS 142 (143)
T ss_dssp S-----SCCEEEEEEEEEGGGC-CCSSCEEEEEECBC
T ss_pred C-----CCCcEEEEEEEEchhc-cCCCCCccEEeCCC
Confidence 8 7899999999999995 55666678999963
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=9.9e-16 Score=144.40 Aligned_cols=103 Identities=16% Similarity=0.073 Sum_probs=88.8
Q ss_pred cEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC----CEEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEEEE
Q 042999 618 VGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG----KKWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVGVF 690 (1006)
Q Consensus 618 ~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~----~~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~v~ 690 (1006)
.+.|.|+|++|++|+. .|.+||||++.+. ....+|++++++.||.|||.|.|++.. ....|.|+||
T Consensus 25 ~~~L~V~v~~a~~L~~-------~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~ 97 (138)
T d1wfma_ 25 KAELFVTRLEAVTSNH-------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLR 97 (138)
T ss_dssp TTEEEEEEEEEECCCC-------SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEE
T ss_pred CCEEEEEEEEcCCCCC-------CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEe
Confidence 4689999999999943 6678999999993 345789999999999999999999865 3568999999
Q ss_pred ECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeec
Q 042999 691 DNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLL 734 (1006)
Q Consensus 691 d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 734 (1006)
|++.++ ++++||++.|+|.++..+...+.||+|....
T Consensus 98 d~~~~~-------~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~~ 134 (138)
T d1wfma_ 98 TCDRFS-------RHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134 (138)
T ss_dssp ECCSSC-------TTSCSEEEEEESSSSSSCTTCCEEEECCCCS
T ss_pred eecccc-------cceeeeEEEEEhHHccCCCCceEeEeCCCCC
Confidence 999887 8999999999999998776678999997644
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=3.6e-17 Score=155.74 Aligned_cols=110 Identities=27% Similarity=0.522 Sum_probs=91.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC--------------eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCc
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG--------------QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCE 80 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~--------------~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~ 80 (1006)
.+.|.|+|++|+||+.++..|.+||||++++.. ++++|++++++.||.|||+|.|...........
T Consensus 17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~ 96 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK 96 (142)
T ss_dssp TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence 368999999999999999999999999999831 236899999999999999999985442222356
Q ss_pred eEEEEEEeCCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 81 ELEIEVYNDKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 81 ~L~i~V~d~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
.|.|.|||++.+ ++|++||++.++|.++ ..+.....||+|.++.
T Consensus 97 ~L~i~V~d~d~~-----~~~~~lG~~~i~L~~l-~~~~~~~~W~~L~~~~ 140 (142)
T d1rh8a_ 97 TLEVTVWDYDRF-----SSNDFLGEVLIDLSST-SHLDNTPRWYPLKEQT 140 (142)
T ss_dssp EEEEEEEEECSS-----SCEEEEEEEEEETTSC-GGGTTCCEEEECBCCC
T ss_pred EEEEEEEEecCC-----CCCeeeEEEEEEhHHc-CCCCCceEEEECcCcC
Confidence 899999999998 7899999999999996 4555567899998754
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.4e-15 Score=140.86 Aligned_cols=105 Identities=22% Similarity=0.346 Sum_probs=82.0
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-----CCEEEEeecccCCCCCeeccEEEEEEeC----CCcEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYTWQVYD----PCTVLTV 687 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-----~~~~~rT~~~~~~~nP~wne~~~~~v~~----~~~~l~i 687 (1006)
..+.|.|+|++|+||++.+ . .+.+||||++.+ .....||++++++.||.|||.|.|.... ....|.|
T Consensus 12 ~~~~L~V~V~~a~~L~~~~---~-~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i 87 (125)
T d2bwqa1 12 VGHQLIVTILGAKDLPSRE---D-GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEI 87 (125)
T ss_dssp TTTEEEEEEEEEESCCCCT---T-SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEE
T ss_pred CCCEEEEEEEEeECCCCcC---C-CCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEE
Confidence 3468999999999999854 4 788999999998 2456899999999999999999997433 2347999
Q ss_pred EEEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 688 GVFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 688 ~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
.|||.+.++. .++++||++.|+|.++..... .+||+|.
T Consensus 88 ~v~d~~~~~~-----~~~~~iG~~~i~l~~~~~~~~-~~Wy~L~ 125 (125)
T d2bwqa1 88 TLWDQARVRE-----EESEFLGEILIELETALLDDE-PHWYKLQ 125 (125)
T ss_dssp EEEEC------------CEEEEEEEEEGGGCCCSSC-EEEEECC
T ss_pred EEEECCCCCC-----CCCeeEEEEEEEchhcCCCCC-CEEEeCc
Confidence 9999997641 146799999999999876543 6899983
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=6.5e-15 Score=138.92 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=84.1
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-----CCEEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-----GKKWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-----~~~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~ 688 (1006)
..|.|.|+|++|+||++++ . .|.+||||++++ .....||++++++.||.|||+|.|++... ...|.|.
T Consensus 13 ~~~~L~V~v~~a~nL~~~~---~-~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~ 88 (137)
T d2cm5a1 13 QQGGLIVGIIRCVHLAAMD---A-NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDIS 88 (137)
T ss_dssp TTTEEEEEEEEEESCCCCS---T-TSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEE
T ss_pred CCCEEEEEEEEEECCCCCC---C-CCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEE
Confidence 4578999999999998854 4 778999999997 24567999999999999999999998643 4589999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLV 732 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~ 732 (1006)
|||++.++ +|++||.+.|++..+..+. ++||+|..
T Consensus 89 v~~~~~~~-------~~~~iG~~~i~l~~~~~~~--~~W~~l~~ 123 (137)
T d2cm5a1 89 VWDYDIGK-------SNDYIGGCQLGISAKGERL--KHWYECLK 123 (137)
T ss_dssp EEECCSSS-------CCEEEEEEEEETTCCHHHH--HHHHHHHH
T ss_pred eeeCCCCC-------CCCEEEEEEeCccccCcch--hhhhhHhh
Confidence 99999877 8999999999998654322 45666543
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=4.8e-15 Score=139.73 Aligned_cols=104 Identities=17% Similarity=0.143 Sum_probs=80.0
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE--CC---EEEEeecccCCCCCeeccEEEEEEeCC---CcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY--GK---KWVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~--~~---~~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~ 688 (1006)
..|.|.|+|++|+||++++ . +|.+||||++.+ +. ...||++++++.||.|||+|.|.+... ...|.|.
T Consensus 13 ~~~~L~V~v~~a~~L~~~~---~-~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~ 88 (138)
T d1w15a_ 13 TTNTLTVVVLKARHLPKSD---V-SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFL 88 (138)
T ss_dssp TTTEEEEEEEEEESCC----------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEE
T ss_pred CCCEEEEEEEEeECCCCCC---C-CCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEE
Confidence 3568999999999999864 4 778999999998 33 345899999999999999999998542 3469999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEccccc------------CCceEeeEEEee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLE------------NNKVYTTSYPLL 731 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~------------~~~~~~~~~~L~ 731 (1006)
|||+|.++ ++++||.+.|++.... .+++...||+|.
T Consensus 89 v~d~~~~~-------~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~ 136 (138)
T d1w15a_ 89 VLDSERGS-------RNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLC 136 (138)
T ss_dssp EEECCTTS-------CCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred EEeCCCCC-------CCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEcc
Confidence 99999887 8999999999997532 234556676664
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2e-15 Score=139.75 Aligned_cols=109 Identities=23% Similarity=0.428 Sum_probs=84.8
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEE-----CCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADF-----DGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~-----~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|+||+.++..+.+||||++.+ ...+++|++++++.||.|||+|.|......+.....|.|.|||
T Consensus 12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d 91 (125)
T d2bwqa1 12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD 91 (125)
T ss_dssp TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEE
Confidence 35689999999999999998999999999999 2456899999999999999999997433333335689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEce
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLE 127 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~ 127 (1006)
++... .+++++||++.++++++...+ ..+||+|+
T Consensus 92 ~~~~~---~~~~~~iG~~~i~l~~~~~~~--~~~Wy~L~ 125 (125)
T d2bwqa1 92 QARVR---EEESEFLGEILIELETALLDD--EPHWYKLQ 125 (125)
T ss_dssp C----------CEEEEEEEEEGGGCCCSS--CEEEEECC
T ss_pred CCCCC---CCCCeeEEEEEEEchhcCCCC--CCEEEeCc
Confidence 99761 134679999999999964333 34799985
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.2e-14 Score=136.86 Aligned_cols=116 Identities=22% Similarity=0.254 Sum_probs=92.1
Q ss_pred eeeEEEEEeeeCCccccccccccCCCCCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEE---CCEE
Q 042999 580 CGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKY---GKKW 656 (1006)
Q Consensus 580 ~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~---~~~~ 656 (1006)
-|+|++.+.... ..+.|.|+|++|+||+.++. . .+.+||||++.+ +...
T Consensus 8 ~G~l~~sl~Y~~-------------------------~~~~L~V~V~~a~~L~~~d~--~-~~~~dpyV~v~l~~~~~~~ 59 (138)
T d1ugka_ 8 LGTLFFSLEYNF-------------------------ERKAFVVNIKEARGLPAMDE--Q-SMTSDPYIKMTILPEKKHK 59 (138)
T ss_dssp CCEEEEEEEEEG-------------------------GGTEEEEEEEEEESCCCCBT--T-TTBCEEEEEEEEETTTCSE
T ss_pred CEEEEEEEEEeC-------------------------CCCEEEEEEEEecCCCCCCC--C-CCccceEEEEEEcCCCCEe
Confidence 599999886542 23589999999999998653 2 345899999999 5667
Q ss_pred EEeecccCCCCCeeccEEEEEEeCC----CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccccCC-ceEeeEEEe
Q 042999 657 VRTRTITDCFDPRWNEQYTWQVYDP----CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTLENN-KVYTTSYPL 730 (1006)
Q Consensus 657 ~rT~~~~~~~nP~wne~~~~~v~~~----~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~-~~~~~~~~L 730 (1006)
.||+++.++.||.|||+|.|..... ...|+|+|||+|.++ +|++||.+.|+|+++... .....|..+
T Consensus 60 ~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d~~~-------~~~~iG~~~i~L~~~~~~~~~~~~~~~~ 131 (138)
T d1ugka_ 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS-------RDDIIGEVLIPLSGIELSEGKMLMNREI 131 (138)
T ss_dssp EECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC-------CCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred EeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECCCCC-------CCcEEEEEEEEcccccCCCCeEEEEeec
Confidence 8999999999999999999975432 347999999999887 899999999999998533 333444444
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=1.8e-14 Score=138.83 Aligned_cols=120 Identities=23% Similarity=0.241 Sum_probs=97.1
Q ss_pred cceeeeEEEEEeeeCCccccccccccCCCCCccccccCCCCcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEEC--C
Q 042999 577 RSYCGRIQLKLCLEGGYHVLDEAAHVCSDFRPTAKQLWKPPVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYG--K 654 (1006)
Q Consensus 577 ~~~~G~l~l~v~l~~~~~~~d~~~~~~~~~~p~~~~l~~~~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~--~ 654 (1006)
....|+|.+.+++.. ..|.|.|+|++|+||++.+ . .+.+||||++.+. +
T Consensus 8 ~~~~G~l~~sl~Y~~-------------------------~~~~L~V~V~~a~~L~~~~---~-~~~~dpyV~v~l~~~~ 58 (157)
T d1uowa_ 8 LEKLGDICFSLRYVP-------------------------TAGKLTVVILEAKNLKKMD---V-GGLSDPYVKIHLMQNG 58 (157)
T ss_dssp GGCCCEEEEEEEEET-------------------------TTTEEEEEEEEEESCCCCS---T-TSCCCEEEEEEEEETT
T ss_pred ceeeeEEEEEEEEcC-------------------------CCCEEEEEEEEEEEccccc---C-CCCCCeeEEEEEecCC
Confidence 344799998876542 3468999999999998754 4 7889999999983 2
Q ss_pred E---EEEeecccCCCCCeeccEEEEEEeCC---CcEEEEEEEECCCCCcCCCCCCCCceeEEEEEEcccc----------
Q 042999 655 K---WVRTRTITDCFDPRWNEQYTWQVYDP---CTVLTVGVFDNWRMFADASEERPDYRIGKIRIRVSTL---------- 718 (1006)
Q Consensus 655 ~---~~rT~~~~~~~nP~wne~~~~~v~~~---~~~l~i~v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l---------- 718 (1006)
. ..+|++++++.||+|||+|.|++... ...|.|.|||++.++ ++++||++.|++...
T Consensus 59 ~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~~~~-------~~~~iG~~~i~l~~~~~~~~hW~~~ 131 (157)
T d1uowa_ 59 KRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG-------KNDAIGKVFVGYNSTGAELRHWSDM 131 (157)
T ss_dssp EEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSS-------CCCEEEEEEEETTCCHHHHHHHHHH
T ss_pred ccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccCCCC-------CCceeEEEEEecccCChhHHHHHHH
Confidence 2 34899999999999999999998653 348999999999987 899999999999753
Q ss_pred --cCCceEeeEEEeee
Q 042999 719 --ENNKVYTTSYPLLV 732 (1006)
Q Consensus 719 --~~~~~~~~~~~L~~ 732 (1006)
...++...||+|..
T Consensus 132 ~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 132 LANPRRPIAQWHTLQV 147 (157)
T ss_dssp HHSTTCCEEEEEECBC
T ss_pred HhCCCCceeEeEeCCC
Confidence 23456689999965
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1e-14 Score=137.35 Aligned_cols=107 Identities=20% Similarity=0.321 Sum_probs=86.5
Q ss_pred ccEEEEEEEEecCCCCCCCCC-CCCcEEEEEE---CCeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCC
Q 042999 15 VRKLVVEVVDARDLLPKDGQG-SSSPYVIADF---DGQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDK 90 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g-~~dPyv~v~~---~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d 90 (1006)
.+.|.|+|++|+||+.++..+ .+||||++.+ ..++++|++++++.||.|||+|.|............|+|+|||++
T Consensus 21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d 100 (138)
T d1ugka_ 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD 100 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECC
Confidence 468999999999999887655 4799999999 456789999999999999999999754444444668999999999
Q ss_pred CCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEc
Q 042999 91 RYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPL 126 (1006)
Q Consensus 91 ~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L 126 (1006)
.+ +++++||++.++|+++.........|..+
T Consensus 101 ~~-----~~~~~iG~~~i~L~~~~~~~~~~~~~~~~ 131 (138)
T d1ugka_ 101 RF-----SRDDIIGEVLIPLSGIELSEGKMLMNREI 131 (138)
T ss_dssp SS-----CCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred CC-----CCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence 98 78999999999999963333333345554
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.4e-14 Score=136.43 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=89.8
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
..+.|.|+|++|++|.. .|.+||||++.+. ...++|++++++.||+|||+|.|.+... ++....|.|.|||+
T Consensus 24 ~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~-~l~~~~L~~~V~d~ 99 (138)
T d1wfma_ 24 QKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE-ELPTATLTLTLRTC 99 (138)
T ss_dssp TTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTT-SSTTCEEEEEEEEC
T ss_pred CCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeeh-hccceEEEEEEeee
Confidence 35689999999999943 5679999999994 2358899999999999999999998764 33367899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEceecC
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEKKS 130 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~~~ 130 (1006)
+.+ +++++||++.|+|.++ ..+.....|++|.+..
T Consensus 100 ~~~-----~~~~~iG~~~i~L~~l-~~~~~~~~W~~L~~~~ 134 (138)
T d1wfma_ 100 DRF-----SRHSVAGELRLGLDGT-SVPLGAAQWGELKTSG 134 (138)
T ss_dssp CSS-----CTTSCSEEEEEESSSS-SSCTTCCEEEECCCCS
T ss_pred ccc-----ccceeeeEEEEEhHHc-cCCCCceEeEeCCCCC
Confidence 998 7899999999999995 5555567899998754
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=1.8e-14 Score=135.82 Aligned_cols=92 Identities=29% Similarity=0.403 Sum_probs=74.9
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEE--CC---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADF--DG---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~--~~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|+||+.++..+.+||||++++ ++ .+++|++++++.||.|||+|.|.+.... .....|.|.|||+
T Consensus 14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~-~~~~~l~i~v~d~ 92 (138)
T d1w15a_ 14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCES-LEEISVEFLVLDS 92 (138)
T ss_dssp TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSS-STTEEEEEEEEEC
T ss_pred CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHH-hCccEEEEEEEeC
Confidence 5689999999999999998899999999998 22 3478999999999999999999986643 3356799999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCee
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQ 112 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~ 112 (1006)
+.+ +++++||++.+++..
T Consensus 93 ~~~-----~~~~~iG~~~i~l~~ 110 (138)
T d1w15a_ 93 ERG-----SRNEVIGRLVLGATA 110 (138)
T ss_dssp CTT-----SCCEEEEEEEESTTC
T ss_pred CCC-----CCCCEEEEEEEcchh
Confidence 998 789999999999875
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=3.4e-14 Score=133.83 Aligned_cols=106 Identities=22% Similarity=0.339 Sum_probs=86.7
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC-----CeEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFD-----GQRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|+||+.++..+.+||||++++. ..+++|++++++.||.|||+|.|.+.... .....|.|.|||
T Consensus 13 ~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~-l~~~~l~v~v~~ 91 (137)
T d2cm5a1 13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD-LAKKSLDISVWD 91 (137)
T ss_dssp TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGG-GGGCEEEEEEEE
T ss_pred CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHH-ccccEEEEEeee
Confidence 357899999999999998888999999999982 35589999999999999999999986532 335689999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
++.+ +++++||++.+++..+. ....+|++|.+
T Consensus 92 ~~~~-----~~~~~iG~~~i~l~~~~---~~~~~W~~l~~ 123 (137)
T d2cm5a1 92 YDIG-----KSNDYIGGCQLGISAKG---ERLKHWYECLK 123 (137)
T ss_dssp CCSS-----SCCEEEEEEEEETTCCH---HHHHHHHHHHH
T ss_pred CCCC-----CCCCEEEEEEeCccccC---cchhhhhhHhh
Confidence 9998 78999999999998631 11234665543
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=3.8e-14 Score=136.56 Aligned_cols=109 Identities=26% Similarity=0.360 Sum_probs=89.7
Q ss_pred ccEEEEEEEEecCCCCCCCCCCCCcEEEEEEC--C---eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeC
Q 042999 15 VRKLVVEVVDARDLLPKDGQGSSSPYVIADFD--G---QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYND 89 (1006)
Q Consensus 15 ~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~--~---~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~ 89 (1006)
.+.|.|+|++|+||+.++..+.+||||++++. + ..++|++++++.||+|||+|.|.+.... .....|.|.|||+
T Consensus 24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~-l~~~~l~i~v~d~ 102 (157)
T d1uowa_ 24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ-IQKVQVVVTVLDY 102 (157)
T ss_dssp TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGG-GGGCEEEEEEEEC
T ss_pred CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHH-cCccEEEEEEccc
Confidence 56899999999999999988999999999984 2 3468999999999999999999987642 2256899999999
Q ss_pred CCCCCCCCCCCceeEEEEEeCeee----------eee-CCceeEEEEceec
Q 042999 90 KRYCNGSGRKNHFLGRVKLCGSQF----------ARR-GDEGLVYFPLEKK 129 (1006)
Q Consensus 90 d~~~~~~~~~d~~lG~~~v~l~~l----------~~~-~~~~~~w~~L~~~ 129 (1006)
+.+ +++++||++.+++... +.. .....+|++|...
T Consensus 103 ~~~-----~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 103 DKI-----GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (157)
T ss_dssp CSS-----SCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred CCC-----CCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence 999 7899999999999652 222 2334589998753
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=3.2e-14 Score=130.20 Aligned_cols=106 Identities=13% Similarity=0.264 Sum_probs=84.7
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEECCE-----EEEeecccCCCCCeeccEEEEEEeCCCcEEEEEEEECCC
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGKK-----WVRTRTITDCFDPRWNEQYTWQVYDPCTVLTVGVFDNWR 694 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~~-----~~rT~~~~~~~nP~wne~~~~~v~~~~~~l~i~v~d~~~ 694 (1006)
.+.+.++.+..+++ . +|.+||||+|++++. ..+|+++++|+||+|||+|.|.|.+ ...|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~~-----~-~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQA-----E-DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA- 77 (123)
T ss_dssp EEEEEEEECCTTCC-----C-CCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET-
T ss_pred EEEEEEeecccCCC-----C-CCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc-
Confidence 34455566666644 3 778999999999542 3468889999999999999999976 467999999974
Q ss_pred CCcCCCCCCCCceeEEEEEEccccc-----CCceEeeEEEeeeeccCCcccccEEEEEEEEe
Q 042999 695 MFADASEERPDYRIGKIRIRVSTLE-----NNKVYTTSYPLLVLLRTGLKKMGEIELAVRFV 751 (1006)
Q Consensus 695 ~~~~~~~~~~d~~lG~~~i~l~~l~-----~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~~ 751 (1006)
|+++|.+.|++.++. .+...+.|++|. +.|+|++.++|-
T Consensus 78 ----------d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--------~~Gkl~l~v~~f 121 (123)
T d1bdya_ 78 ----------EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--------PQAKVLMCVQYF 121 (123)
T ss_dssp ----------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--------SSCEEEEEEEEE
T ss_pred ----------ccccCccEEehhheeeccccCCCcccEEEeCC--------CCEEEEEEEEEe
Confidence 679999999999874 356778999994 359999999985
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.47 E-value=5.9e-15 Score=140.46 Aligned_cols=103 Identities=22% Similarity=0.250 Sum_probs=83.3
Q ss_pred CcEEEEEEEeeccCCccCccCCCCCCCCCeEEEEEECC-----EEEEeecccCCCCCeeccEEEEEEeC---CCcEEEEE
Q 042999 617 PVGILELGILGARGLLPMKTKNGGKGSTDAYCVAKYGK-----KWVRTRTITDCFDPRWNEQYTWQVYD---PCTVLTVG 688 (1006)
Q Consensus 617 ~~g~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~~~-----~~~rT~~~~~~~nP~wne~~~~~v~~---~~~~l~i~ 688 (1006)
..|.|.|+|++|+||++.+ . .|.+||||++.+.+ ...||++++++.||.|||.|.|++.. ....|.|.
T Consensus 18 ~~~~L~V~V~~a~nL~~~~---~-~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~ 93 (145)
T d1dqva2 18 TAGLLTVTIIKASNLKAMD---L-TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 93 (145)
T ss_dssp TTTEEEEEEEEEESCCCCS---S-SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCE
T ss_pred CCCEEEEEEEEEeCCCCcC---C-CCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEE
Confidence 4579999999999998754 4 77899999999842 25789999999999999999998764 34579999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEee
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLL 731 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~ 731 (1006)
|||++.++ +|++||.+.|++..+... ...+|++|.
T Consensus 94 v~d~~~~~-------~~~~iG~~~i~l~~~~~~-~~~~W~~l~ 128 (145)
T d1dqva2 94 VVDYDCIG-------HNEVIGVCRVGPEAADPH-GREHWAEML 128 (145)
T ss_dssp EEECCSSS-------CCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred EEecCCCC-------CCcEEEEEEECchHcCch-hhHHHHHHH
Confidence 99999887 899999999999876422 124566654
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=2e-13 Score=124.84 Aligned_cols=108 Identities=12% Similarity=0.263 Sum_probs=85.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEeCCC
Q 042999 17 KLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYNDKR 91 (1006)
Q Consensus 17 ~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d~d~ 91 (1006)
.+.|.+.++..++ ..+|.+||||.|++++ ..++|+++++|+||+|||+|.|.+.. .+.|.|.|||+|
T Consensus 6 ~~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-----~~~l~i~V~d~d- 77 (123)
T d1bdya_ 6 RISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-----GRVIQIVLMRAA- 77 (123)
T ss_dssp EEEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-----TCEEEEEEEEET-
T ss_pred EEEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-----ccEEEEEEEEcc-
Confidence 4455555555544 4468999999999954 23679999999999999999999876 357999999954
Q ss_pred CCCCCCCCCceeEEEEEeCeeeee----eCCceeEEEEceecCCceeeeEEEEEEEEEEe
Q 042999 92 YCNGSGRKNHFLGRVKLCGSQFAR----RGDEGLVYFPLEKKSVFSWIRGEIGLRIYYYD 147 (1006)
Q Consensus 92 ~~~~~~~~d~~lG~~~v~l~~l~~----~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~~~ 147 (1006)
++++|.+.+++.++.. .+.....|++|++ +|+|++++.|+.
T Consensus 78 --------d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-------~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 --------EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP-------QAKVLMCVQYFL 122 (123)
T ss_dssp --------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-------SCEEEEEEEEEE
T ss_pred --------ccccCccEEehhheeeccccCCCcccEEEeCCC-------CEEEEEEEEEec
Confidence 4799999999998743 3455668999964 799999999975
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=8.5e-14 Score=132.29 Aligned_cols=107 Identities=26% Similarity=0.329 Sum_probs=86.2
Q ss_pred cccEEEEEEEEecCCCCCCCCCCCCcEEEEEECC-----eEEEeeCcCCCCCCeeeeEEEEEeeCCCCCCCceEEEEEEe
Q 042999 14 TVRKLVVEVVDARDLLPKDGQGSSSPYVIADFDG-----QRKRTSTKFRDLNPVWNEPLEFIVSDPKNMDCEELEIEVYN 88 (1006)
Q Consensus 14 ~~~~L~V~v~~a~~L~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~L~i~V~d 88 (1006)
..+.|.|+|++|+||+.++..+.+||||++++.. .+++|++++++.||.|||+|.|.+... ......|.|.|||
T Consensus 18 ~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~-~~~~~~l~v~v~d 96 (145)
T d1dqva2 18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPE-SVENVGLSIAVVD 96 (145)
T ss_dssp TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSG-GGGSCCCCCEEEE
T ss_pred CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehh-hcCCCEEEEEEEe
Confidence 3578999999999999988889999999999952 247899999999999999999987653 2225679999999
Q ss_pred CCCCCCCCCCCCceeEEEEEeCeeeeeeCCceeEEEEcee
Q 042999 89 DKRYCNGSGRKNHFLGRVKLCGSQFARRGDEGLVYFPLEK 128 (1006)
Q Consensus 89 ~d~~~~~~~~~d~~lG~~~v~l~~l~~~~~~~~~w~~L~~ 128 (1006)
++.. +++++||++.++++.+... ...+|++|.+
T Consensus 97 ~~~~-----~~~~~iG~~~i~l~~~~~~--~~~~W~~l~~ 129 (145)
T d1dqva2 97 YDCI-----GHNEVIGVCRVGPEAADPH--GREHWAEMLA 129 (145)
T ss_dssp CCSS-----SCCEEEEECCCSSCTTCHH--HHHHHHTSSS
T ss_pred cCCC-----CCCcEEEEEEECchHcCch--hhHHHHHHHh
Confidence 9998 7899999999999874211 1234666543
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=7.1e-12 Score=114.04 Aligned_cols=111 Identities=21% Similarity=0.271 Sum_probs=81.3
Q ss_pred EEEEEEEEeecCcccCCCCCCCCCCcEEEEEE-C-----CccceeeeeecCCCCCCceecce-eee-eeccCCCCcEEEE
Q 042999 456 YLRVTVMEAQDLCIAHNLPPLTAPEIRVKAQL-A-----LQSARTRRGSMNNHSSSFHWHED-VFF-VAAEPFEDSLILL 527 (1006)
Q Consensus 456 ~L~V~v~~a~~L~~~~~~d~~~~~dpyv~v~l-g-----~~~~kT~~~~~~~~t~nP~w~e~-~~f-~v~~~~~~~L~v~ 527 (1006)
.|+|.|++|++|+.. ++||||+|.+ | ..+++|++. +.+++.||.|||+ |.| .+..+....|.|.
T Consensus 2 tl~V~Visaq~L~~~-------~~dPyV~V~l~g~~~D~~~~~~t~~~-~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~ 73 (122)
T d2zkmx2 2 TLSITVISGQFLSER-------SVRTYVEVELFGLPGDPKRRYRTKLS-PSTNSINPVWKEEPFVFEKILMPELASLRVA 73 (122)
T ss_dssp EEEEEEEEEESCCSS-------CCCEEEEEEEECCTTSCCCCEECCCC-SSSCCSSCBCCCCCEEEEEESSGGGCEEEEE
T ss_pred EEEEEEEEeeCCCCC-------CCCcEEEEEEECcCCCCCccEEEEEE-EeCCeecceEcccEeEEEecCCCcccEEEEE
Confidence 489999999999733 5899999998 3 234455543 3457899999986 433 3555556689999
Q ss_pred EEECCCCccccceeEEEEEeccccccccccCcccceEEeCcCCCCCCCccceeeeEEEEEee
Q 042999 528 VEDRTAKDAAAVILGHAVVPVSSIDQRIDERHVASKWFPLEGSCGRGCARSYCGRIQLKLCL 589 (1006)
Q Consensus 528 V~D~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~w~~L~~~~~~~~~~~~~G~l~l~v~l 589 (1006)
|||++ +++||++.++|+.+.. +.+|++|.+..+ ..-..+.|.+.+.+
T Consensus 74 V~D~d-----~~~lG~~~ipl~~l~~-------GyR~vpL~~~~g---~~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 74 VMEEG-----NKFLGHRIIPINALNS-------GYHHLCLHSESN---MPLTMPALFIFLEM 120 (122)
T ss_dssp EEETT-----TEEEEEEEEEGGGBCC-------EEEEEEEECTTC---CEEEEEEEEEEEEE
T ss_pred EECCC-----CCEEEEEEEEcccCcC-------CceEEEccCCCc---CCCCCceEEEEEEE
Confidence 99976 7899999999998864 467899988655 22334566665544
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.1e-11 Score=112.90 Aligned_cols=108 Identities=20% Similarity=0.343 Sum_probs=77.6
Q ss_pred EEEEEEeeccCCccCccCCCCCCCCCeEEEEEE-C-----CEEEEeecc--cCCCCCeeccE-EEE-EEeCCC-cEEEEE
Q 042999 620 ILELGILGARGLLPMKTKNGGKGSTDAYCVAKY-G-----KKWVRTRTI--TDCFDPRWNEQ-YTW-QVYDPC-TVLTVG 688 (1006)
Q Consensus 620 ~L~v~v~~a~~L~~~~~~d~~~g~sdpyv~v~~-~-----~~~~rT~~~--~~~~nP~wne~-~~~-~v~~~~-~~l~i~ 688 (1006)
+|.|+|++|++|+. .+.||||+|++ | .+..+|+++ .+++||.|||+ |.| .+..+. ..|.|.
T Consensus 2 tl~V~Visaq~L~~--------~~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~ 73 (122)
T d2zkmx2 2 TLSITVISGQFLSE--------RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVA 73 (122)
T ss_dssp EEEEEEEEEESCCS--------SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEE
T ss_pred EEEEEEEEeeCCCC--------CCCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEE
Confidence 68999999999964 24799999998 2 344566654 46799999976 444 344443 489999
Q ss_pred EEECCCCCcCCCCCCCCceeEEEEEEcccccCCceEeeEEEeeeeccCCcccccEEEEEEEE
Q 042999 689 VFDNWRMFADASEERPDYRIGKIRIRVSTLENNKVYTTSYPLLVLLRTGLKKMGEIELAVRF 750 (1006)
Q Consensus 689 v~d~~~~~~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~g~~~~G~l~l~~~~ 750 (1006)
|||+| |++||.+.|||+.+..| -++.||.+...... ..+.|-+.+..
T Consensus 74 V~D~d-----------~~~lG~~~ipl~~l~~G---yR~vpL~~~~g~~l-~~~~L~v~i~~ 120 (122)
T d2zkmx2 74 VMEEG-----------NKFLGHRIIPINALNSG---YHHLCLHSESNMPL-TMPALFIFLEM 120 (122)
T ss_dssp EEETT-----------TEEEEEEEEEGGGBCCE---EEEEEEECTTCCEE-EEEEEEEEEEE
T ss_pred EECCC-----------CCEEEEEEEEcccCcCC---ceEEEccCCCcCCC-CCceEEEEEEE
Confidence 99974 67999999999999877 47789987533221 12555544443
|