Citrus Sinensis ID: 043006

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MRLSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccEEEEcEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEccccEEEEEccccccccccccEEEccccccEEccccccccccccccEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccccccEEEEcccccccEEEEEEccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHcHcccccccEEEccccccc
Coil and Loop (DISEMBL)
MRLSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAHVVDYRSALAnnwamsspicnwigiscglphqrVTALnhldmglggtipshLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFnklsgsiptWIGVLSKLRILSLCnnsltglipnslfnlskLEMLDAMFNVidgsipsgirNLSNLFNLnlgynnlq
Flexible Loop (DISEMBL)
MRLSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNlfnlnlgynnlq
Low Complexity Region (SEG)
MRLSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRnlsnlfnlnlgynnlQ
Disordered region (IsUnstruct)
**LSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGY****
Disordered Region (DISOPRED)
*RLSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAHVVDYRS*****WAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL*
Disordered Region (DISEMBL)
MRLSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ
Disordered Region (DISPRO)
*RLSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.834	0.169	0.373	4e-28
C0LGT6	1031	LRR receptor-like serine/	no	no	0.853	0.169	0.387	1e-26
Q9SD62	1025	Putative receptor-like pr	no	no	0.853	0.170	0.366	2e-24
Q9C9H7	847	Receptor-like protein 12	no	no	0.951	0.230	0.369	2e-19
C0LGS3	768	Probable LRR receptor-lik	no	no	0.780	0.208	0.402	4e-18
Q42371	976	LRR receptor-like serine/	no	no	0.765	0.160	0.372	4e-18
C0LGE4	882	Probable LRR receptor-lik	no	no	0.970	0.225	0.338	7e-18
O49318	1124	Probable leucine-rich rep	no	no	0.541	0.098	0.428	2e-17
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.878	0.179	0.315	3e-17
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.878	0.165	0.347	4e-17

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  124 bits (311), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 112/201 (55%), Gaps = 30/201 (14%)

Query: 30  TDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMG---LGG 86
           TD+ ALL FK+ V + +  + ++W  S P+CNW G++CG  ++RVT   HL++G   LGG
Sbjct: 24  TDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVT---HLELGRLQLGG 80

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTF----------------- 129
            I   +GNL FL+SLDL  N F G +  E+GQL RL ++                     
Sbjct: 81  VISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRL 140

Query: 130 -------NKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG 182
                  N+L GS+P+ +G L+ L  L+L  N++ G +P SL NL+ LE L    N ++G
Sbjct: 141 LNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEG 200

Query: 183 SIPSGIRNLSNLFNLNLGYNN 203
            IPS +  L+ +++L L  NN
Sbjct: 201 EIPSDVAQLTQIWSLQLVANN 221

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/178 (38%), Positives = 107/178 (60%), Gaps = 3/178 (1%)

Query: 30  TDQSALLAFKAHVVD--YRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGT 87
           TD  ALL FK+ V +   R  LA+ W  SSP CNWIG++CG   +RV +LN     L G 
Sbjct: 30  TDMQALLEFKSQVSENNKREVLAS-WNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGV 88

Query: 88  IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLR 147
           I   +GNL FL  L+L  N+F   +  ++G+L RL++++ ++N L G IP+ +   S+L 
Sbjct: 89  ISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLS 148

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            + L +N L   +P+ L +LSKL +LD   N + G+ P+ + NL++L  L+  YN ++
Sbjct: 149 TVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMR 206

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 73/199 (36%), Positives = 105/199 (52%), Gaps = 24/199 (12%)

Query: 30  TDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIP 89
           TD+ ALL FK+ V +    +  +W  S P+C+W G+ CGL H+RVT ++   + L G + 
Sbjct: 39  TDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVS 98

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWI--------- 140
             +GNL FL SL+L  N FHG +  E+G L RL++++ + N   G IP  +         
Sbjct: 99  PFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTL 158

Query: 141 ---------------GVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP 185
                          G LSKL +LSL  N+LTG  P SL NL+ L+MLD ++N I+G IP
Sbjct: 159 DLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGEIP 218

Query: 186 SGIRNLSNLFNLNLGYNNL 204
             I  L  +    +  N  
Sbjct: 219 GDIARLKQMIFFRIALNKF 237

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/203 (36%), Positives = 104/203 (51%), Gaps = 8/203 (3%)

Query: 10  MLLLQYLTASLATKTLKNITTDQ-SALLAFKAHV-VDYRSALANNWA----MSSPICNWI 63
           ++ L  L  SLA+ +      DQ  ALL F+    ++    + N W      S+  C W 
Sbjct: 16  IIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWN 75

Query: 64  GISCGLPHQRVTALNHLDMGLGGTIP--SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRR 121
           G++C     +V +L+  +  L   +   S L  L +L  LDLT  N +G +   LG L  
Sbjct: 76  GVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSH 135

Query: 122 LRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID 181
           L  ++  FNK  G IP  IG L++LR L L NN LTG IP+SL NLS+L  L+   N + 
Sbjct: 136 LTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSLGNLSRLVNLELFSNRLV 195

Query: 182 GSIPSGIRNLSNLFNLNLGYNNL 204
           G IP  I +L  L NL+L  NNL
Sbjct: 196 GKIPDSIGDLKQLRNLSLASNNL 218

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGS3|Y4372_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 66/164 (40%), Positives = 92/164 (56%), Gaps = 4/164 (2%)

Query: 28  ITTDQSALLAFKAHV-VDYRSALAN-NWAMSSPICNWIGISCGLPHQRVTALNHLDMGLG 85
           + +D   L+ FK+ V VD  S L   N+   SP C+W GISC     +V  L+  +  L 
Sbjct: 22  LNSDGLVLMKFKSSVLVDPLSLLQTWNYKHESP-CSWRGISCNN-DSKVLTLSLPNSQLL 79

Query: 86  GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSK 145
           G+IPS LG+LL L SLDL+ N+F+G L       R LRF+  + N +SG IP+ IG L  
Sbjct: 80  GSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHN 139

Query: 146 LRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIR 189
           L  L+L +N+L G +P +L +L  L ++    N   G IP G R
Sbjct: 140 LLTLNLSDNALAGKLPTNLASLRNLTVVSLENNYFSGEIPGGWR 183

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score = 91.3 bits (225), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 60/161 (37%), Positives = 85/161 (52%), Gaps = 4/161 (2%)

Query: 28  ITTDQSA-LLAFKAHVVDYRSALANNWAMS--SPICNWIGISCGLPHQRVTALNHLDMGL 84
           +T+++ A LL  K    D  + L + W  S  S  C W G+SC      V ALN  D+ L
Sbjct: 22  VTSEEGATLLEIKKSFKDVNNVLYD-WTTSPSSDYCVWRGVSCENVTFNVVALNLSDLNL 80

Query: 85  GGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLS 144
            G I   +G+L  L+S+DL  N   G +  E+G    L+ +  +FN+LSG IP  I  L 
Sbjct: 81  DGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLK 140

Query: 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP 185
           +L  L L NN L G IP++L  +  L++LD   N + G IP
Sbjct: 141 QLEQLILKNNQLIGPIPSTLSQIPNLKILDLAQNKLSGEIP 181

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGE4|Y1124_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 102/207 (49%), Gaps = 8/207 (3%)

Query: 1   MRLSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAHVVDYRSALANNWAMSSPIC 60
           MR    F+ ++   Y++ S +        +++  LL FK  + D       +W     +C
Sbjct: 1   MRKVHLFLVLVHFIYISTSRSDSI-----SERDILLQFKGSISDDPYNSLASWVSDGDLC 55

Query: 61  N-WIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQL 119
           N + GI+C  P   V  +   +  L GT+   L NL F+  L+L  N F G+L  +  +L
Sbjct: 56  NSFNGITCN-PQGFVDKIVLWNTSLAGTLAPGLSNLKFIRVLNLFGNRFTGNLPLDYFKL 114

Query: 120 RRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNL-SKLEMLDAMFN 178
           + L  I+ + N LSG IP +I  LS LR L L  N  TG IP SLF    K + +    N
Sbjct: 115 QTLWTINVSSNALSGPIPEFISELSSLRFLDLSKNGFTGEIPVSLFKFCDKTKFVSLAHN 174

Query: 179 VIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            I GSIP+ I N +NL   +  YNNL+
Sbjct: 175 NIFGSIPASIVNCNNLVGFDFSYNNLK 201

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 71/119 (59%)

Query: 86  GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSK 145
           G IPS +GN+  L  L L  N  +G +  ELG+L ++  I F+ N LSG IP  +  +S+
Sbjct: 291 GPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELSKISE 350

Query: 146 LRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           LR+L L  N LTG+IPN L  L  L  LD   N + G IP G +NL+++  L L +N+L
Sbjct: 351 LRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPPGFQNLTSMRQLQLFHNSL 409

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 101/206 (49%), Gaps = 26/206 (12%)

Query: 24  TLKNITTDQSALLAFKAH-VVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDM 82
           T+    T+  ALL+ K+   +D  S L  +W +S+  C+W G++C +  + VT+L+   +
Sbjct: 20  TVAKPITELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGL 79

Query: 83  GLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV 142
            L GT+ S + +L  L +L L  N   G +  ++  L  LR ++ + N  +GS P  +  
Sbjct: 80  NLSGTLSSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSS 139

Query: 143 -LSKLRILSLCNNSLTGLIPNSLFNLSK------------------------LEMLDAMF 177
            L  LR+L L NN+LTG +P SL NL++                        LE L    
Sbjct: 140 GLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSG 199

Query: 178 NVIDGSIPSGIRNLSNLFNLNLGYNN 203
           N + G IP  I NL+ L  L +GY N
Sbjct: 200 NELTGKIPPEIGNLTTLRELYIGYYN 225

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 95/187 (50%), Gaps = 7/187 (3%)

Query: 24  TLKNITTDQSALLAFKAHVVDYRSALANNW----AMSSPICN--WIGISCGLPHQRVTAL 77
           ++ ++ +D  ALL+   H       +A+ W    + ++P CN  W G+ C L    V  L
Sbjct: 23  SVSSLNSDGLALLSLLKHFDKVPLEVASTWKENTSETTP-CNNNWFGVICDLSGNVVETL 81

Query: 78  NHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP 137
           N    GL G + S +G L  L++LDL+LN+F G L   LG    L ++  + N  SG +P
Sbjct: 82  NLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNNDFSGEVP 141

Query: 138 TWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNL 197
              G L  L  L L  N+L+GLIP S+  L +L  L   +N + G+IP  + N S L  L
Sbjct: 142 DIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCSKLEYL 201

Query: 198 NLGYNNL 204
            L  N L
Sbjct: 202 ALNNNKL 208

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
224115338	255	predicted protein [Populus trichocarpa]	1.0	0.803	0.442	3e-39
255583729	383	serine-threonine protein kinase, plant-t	0.946	0.506	0.459	4e-38
449500845	982	PREDICTED: probable LRR receptor-like se	0.995	0.207	0.441	9e-38
356510768	1214	PREDICTED: probable LRR receptor-like se	0.868	0.146	0.463	7e-37
449465016	1092	PREDICTED: probable LRR receptor-like se	0.873	0.163	0.483	1e-36
359483675	1250	PREDICTED: LRR receptor-like serine/thre	0.863	0.141	0.483	3e-35
302143439	830	unnamed protein product [Vitis vinifera]	0.853	0.210	0.505	5e-35
359497186	1140	PREDICTED: LRR receptor-like serine/thre	0.848	0.152	0.48	2e-34
358344067	416	Receptor protein kinase-like protein [Me	0.960	0.473	0.445	3e-34
359483198	1087	PREDICTED: probable LRR receptor-like se	0.970	0.183	0.448	4e-34

>gi|224115338|ref|XP_002317007.1| predicted protein [Populus trichocarpa] gi|222860072|gb|EEE97619.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/208 (44%), Positives = 123/208 (59%), Gaps = 3/208 (1%)

Query: 1   MRLSIFFVP--MLLLQYLTASLATKTLKNITTDQSALLAFKAHVV-DYRSALANNWAMSS 57
           MR   F +P  ++L      +L    + +ITTDQ ALLA K H+V D ++ L  NW  ++
Sbjct: 1   MRNGCFLIPFTVILWSSFVVTLVANRVTSITTDQDALLALKDHIVNDPQNLLTTNWTATT 60

Query: 58  PICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELG 117
            +C+W+G++CG  H+RV AL    MGL GTIP H GNL FL+      N+F G L  EL 
Sbjct: 61  SVCDWVGVTCGTRHRRVRALKLSHMGLTGTIPPHFGNLSFLVFASFYNNSFRGSLPDELA 120

Query: 118 QLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
           +LRRL++ S   N   G IP+W+G  ++L  LSL NNS TG IP SLF+LS+L+ LD   
Sbjct: 121 KLRRLKYFSIQKNYFGGEIPSWLGSFTRLHTLSLANNSFTGAIPPSLFHLSELDGLDLSN 180

Query: 178 NVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           N + G IP  I  LS L  L L +  L 
Sbjct: 181 NDLQGHIPREIGKLSKLRLLYLRHTGLS 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583729|ref|XP_002532618.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223527674|gb|EEF29784.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/196 (45%), Positives = 123/196 (62%), Gaps = 2/196 (1%)

Query: 10  MLLLQYLTASLATKTLKNITTDQSALLAFKAHVV-DYRSALANNWAMSSPICNWIGISCG 68
           M+LL    ASL  + + N+ TDQ  LLA K  ++ D  + LA NW+ ++ +C W+G++CG
Sbjct: 13  MMLLYSFFASLV-EGVTNLATDQDGLLALKLRLIRDPNNLLATNWSTTTSVCTWVGVTCG 71

Query: 69  LPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFT 128
             H RV AL+  DMGL GT+P HLGNL FL+ +    N+FHG L +EL +LRR++    T
Sbjct: 72  ARHGRVAALDLSDMGLTGTVPPHLGNLSFLVFISFYNNSFHGSLPNELSKLRRMKTFWLT 131

Query: 129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
            N  SG IP+W+G  ++L+ LSL  N  TG+IP S FNLSKL   D   N + G IP  I
Sbjct: 132 KNYFSGEIPSWLGSFARLQQLSLGFNKFTGVIPVSFFNLSKLNFFDLSSNKLQGYIPKAI 191

Query: 189 RNLSNLFNLNLGYNNL 204
            NL++L  L+L  NN 
Sbjct: 192 GNLNSLRILSLEKNNF 207

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449500845|ref|XP_004161209.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 91/206 (44%), Positives = 125/206 (60%), Gaps = 2/206 (0%)

Query: 1   MRLSIFFVPMLLLQYLT-ASLATKTLKNITTDQSALLAFKAHVV-DYRSALANNWAMSSP 58
           M  + FF  +    Y+  A+++    +NITTDQ+ALLA +AH+  D    + N+W+ ++ 
Sbjct: 1   MEKNCFFSSLAFFSYIVIATISMAFAQNITTDQAALLALRAHITSDPFGIITNHWSATTS 60

Query: 59  ICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQ 118
           +CNW+GI CG+ H+RVT+LN   MGL GT P  +G L FL  + +  N+FH  L  EL  
Sbjct: 61  VCNWVGIICGVKHKRVTSLNFSFMGLTGTFPPEVGTLSFLTYVTIKNNSFHDPLPIELTN 120

Query: 119 LRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN 178
           L RL+ +S   N  SG IPTWIG L ++  L L  N  +GLIP SLFNL+ L ML+   N
Sbjct: 121 LPRLKMMSLGNNNFSGEIPTWIGRLPRMEELYLYGNQFSGLIPTSLFNLTSLIMLNLQEN 180

Query: 179 VIDGSIPSGIRNLSNLFNLNLGYNNL 204
            + GSIP  I NL+ L +L L  N L
Sbjct: 181 QLSGSIPREIGNLTLLQDLYLNSNQL 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510768|ref|XP_003524106.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  159 bits (401), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 83/179 (46%), Positives = 115/179 (64%), Gaps = 1/179 (0%)

Query: 27  NITTDQSALLAFKAHVV-DYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLG 85
           N TTD+ ALLA K+ +  D  + L +NW+ ++ +CNW+G++C   H RV  LN  DM L 
Sbjct: 30  NFTTDKLALLALKSSITRDPHNFLTHNWSATTSVCNWVGVTCDAYHGRVRTLNLGDMSLS 89

Query: 86  GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSK 145
           G +PSHLGNL FL  LDL  N FHG L  EL QL RL+F++ ++N+ SG++  WIG LS 
Sbjct: 90  GIMPSHLGNLTFLNKLDLGGNKFHGQLPEELVQLHRLKFLNLSYNEFSGNVSEWIGGLST 149

Query: 146 LRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           LR L+L NN   G IP S+ NL+ LE++D   N I G+IP  +  ++ L  L++  N L
Sbjct: 150 LRYLNLGNNDFGGFIPKSISNLTMLEIMDWGNNFIQGTIPPEVGKMTQLRVLSMYSNRL 208

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465016|ref|XP_004150225.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/180 (48%), Positives = 113/180 (62%), Gaps = 1/180 (0%)

Query: 26  KNITTDQSALLAFKAHVV-DYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGL 84
           +NITTDQ+ALLA +AH+  D      NNW+ ++ +CNW+GI CG+ H+RVT+LN   MGL
Sbjct: 5   QNITTDQAALLALRAHITSDPFGITTNNWSATTSVCNWVGIICGVKHKRVTSLNFSFMGL 64

Query: 85  GGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLS 144
            GT P  +G L FL  + +  N+FH  L  EL  L RL+ +S   N  SG IPTWIG L 
Sbjct: 65  TGTFPPEVGTLSFLTYVTIKNNSFHDPLPIELTNLPRLKMMSLGNNNFSGEIPTWIGRLP 124

Query: 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           ++  L L  N  +GLIP SLFNL+ L ML+   N + GSIP  I NL+ L +L L  N L
Sbjct: 125 RMEELYLYGNQFSGLIPTSLFNLTSLIMLNLQENQLSGSIPREIGNLTLLQDLYLNSNQL 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483675|ref|XP_003632999.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/178 (48%), Positives = 115/178 (64%), Gaps = 1/178 (0%)

Query: 28  ITTDQSALLAFKAHVV-DYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGG 86
           I  D+ AL+A KAH+  D +  LA NW+  S  C+W GISC  P QRV+A+N  +MGL G
Sbjct: 6   ILVDEFALIALKAHITYDSQGMLATNWSTKSSHCSWYGISCNAPQQRVSAINSSNMGLEG 65

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           TI   +GNL FL+SLDL+ N FHG L  ++G+ + L+ ++   NKL GSIP  I  LSKL
Sbjct: 66  TIAPQVGNLSFLVSLDLSNNYFHGSLPKDIGKCKELQQLNLFNNKLVGSIPEAICNLSKL 125

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
             L L NN L G IP  + NL  L++L    N + GSIP+ I N+S+L N++L YN+L
Sbjct: 126 EELYLGNNQLIGEIPKKMSNLLNLKILSFPMNNLTGSIPTTIFNMSSLLNISLSYNSL 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143439|emb|CBI22000.3| unnamed protein product [Vitis vinifera]

 Score =  152 bits (385), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/178 (50%), Positives = 114/178 (64%), Gaps = 3/178 (1%)

Query: 30  TDQSALLAFKAHVV-DYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTI 88
           +D+ ALLA KAH+  D +  LA NW+ ++  CNW G+SC   H R+TALN  +MGL GTI
Sbjct: 88  SDEYALLALKAHITYDSQGILATNWSSTTSYCNWFGVSCNAHHGRLTALNLSNMGLEGTI 147

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRI 148
           P  + NL FL SLDL+ N FH  L +E+G  R+LR + F  N+L+GSIP  +G LSKL  
Sbjct: 148 PPQVSNLSFLASLDLSDNYFHASLPNEIGNCRQLRQLYFFNNELTGSIPQSLGNLSKLEE 207

Query: 149 LSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRN--LSNLFNLNLGYNNL 204
             L +N LTG IP  + NL  L++L    N + GSIPSGI N  LS L  L LG NNL
Sbjct: 208 SYLDSNHLTGDIPEEMSNLLSLKILSLFVNNLTGSIPSGIFNISLSKLEELYLGVNNL 265

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497186|ref|XP_003635448.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/175 (48%), Positives = 113/175 (64%), Gaps = 1/175 (0%)

Query: 31  DQSALLAFKAHVV-DYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIP 89
           D+ AL+A KAH+  D +  LA NW+  SP C+WIGISC  P Q V+A+N  +MGL GTI 
Sbjct: 9   DEFALIALKAHITYDSQGILATNWSTKSPHCSWIGISCNAPQQSVSAINLSNMGLEGTIA 68

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
             +GNL FL+SLDL+ N FHG L  ++G+ + L+ ++   NKL G IP  I  LSKL  L
Sbjct: 69  PQVGNLSFLVSLDLSDNYFHGSLPKDIGKCKELQQLNLFNNKLVGGIPEAICNLSKLEEL 128

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
            L NN L G IP  + +L  L++L    N + GSIP+ I N+S+L N++L  NNL
Sbjct: 129 YLGNNQLIGEIPKKMNHLQNLKVLSFPMNNLTGSIPATIFNISSLLNISLSNNNL 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358344067|ref|XP_003636115.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355502050|gb|AES83253.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/202 (44%), Positives = 126/202 (62%), Gaps = 5/202 (2%)

Query: 2   RLSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAHVV-DYRSALANNWAMSSPIC 60
           RL +F +    L    A LAT T KNITTDQSALLAFK+ +  D    L+NNW+ SS +C
Sbjct: 7   RLLLFLIS---LHCFVACLATNT-KNITTDQSALLAFKSLITSDPYDMLSNNWSTSSSVC 62

Query: 61  NWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLR 120
            W+G++C   H RV +L   +M L GT+  +LGNL FL+ L+L+ N+F G    E+ +L 
Sbjct: 63  TWVGVTCDERHNRVHSLILRNMSLRGTVSPNLGNLSFLVILNLSRNSFSGQFPKEIYRLH 122

Query: 121 RLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVI 180
           RL+ IS TFN+  G IP  +G LS+L+I+ L  N+ +G +P S+ NL +L+  D   N++
Sbjct: 123 RLKVISITFNEFVGGIPEALGDLSQLQIVHLGANNFSGFLPQSIGNLRQLKSFDISRNML 182

Query: 181 DGSIPSGIRNLSNLFNLNLGYN 202
            G IP  I N+S+L  L L  N
Sbjct: 183 FGPIPQTISNMSSLEYLGLHLN 204

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483198|ref|XP_002271405.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  149 bits (377), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/203 (44%), Positives = 125/203 (61%), Gaps = 4/203 (1%)

Query: 3   LSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAHV-VDYRSALANNWAMSSPICN 61
           LS   + + ++Q+  ++    +L N T DQS+LLA KAH+ +D    LA NW+  +  C 
Sbjct: 7   LSSTIISVFIVQF--SACVAMSLSNFT-DQSSLLALKAHITLDPHHVLAGNWSTKTSFCE 63

Query: 62  WIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRR 121
           WIG+SC    QRV AL+  ++GL GTIP  LGNL FL+SLDL+ NNFHG +  E+GQL  
Sbjct: 64  WIGVSCNAQQQRVIALDLSNLGLRGTIPPDLGNLSFLVSLDLSSNNFHGPVPVEVGQLTS 123

Query: 122 LRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID 181
           L  ++  +N LSG IP   G L++L+ L L NNS TG IP S+ N+S LE L    N + 
Sbjct: 124 LLSMNLQYNLLSGQIPPSFGNLNRLQSLFLGNNSFTGTIPPSIGNMSMLETLGLGGNHLQ 183

Query: 182 GSIPSGIRNLSNLFNLNLGYNNL 204
           G+IP  I  LS +  L++  N L
Sbjct: 184 GNIPEEIGKLSTMKILDIQSNQL 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.775	0.157	0.396	9.5e-25
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.760	0.154	0.401	2e-24
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.912	0.181	0.363	7e-24
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.775	0.155	0.371	1e-22
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.780	0.158	0.381	2.7e-22
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.760	0.191	0.402	3.1e-22
TAIR|locus:2157182	751	RLK "receptor-like kinase" [Ar	0.878	0.239	0.331	1.9e-21
TAIR|locus:2115120	768	AT4G37250 [Arabidopsis thalian	0.780	0.208	0.402	8.9e-21
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.887	0.181	0.329	1.8e-20
TAIR|locus:2170668	604	AT5G62710 [Arabidopsis thalian	0.760	0.258	0.393	1.9e-20

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 9.5e-25, P = 9.5e-25
 Identities = 63/159 (39%), Positives = 94/159 (59%)

Query:    30 TDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIP 89
             TD+ ALL FK+ V + +  + ++W  S P+CNW  ++CG  H+RVT LN   + LGG + 
Sbjct:    24 TDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGGIVS 83

Query:    90 SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
               +GN+ FL+SLDL+ N F G +  E+G L RL  +   FN L G IP  +   S+L  L
Sbjct:    84 PSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRLLNL 143

Query:   150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
              L +N L   +P+ L +L+KL +LD   N + G +P  +
Sbjct:   144 DLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRSL 182

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 65/162 (40%), Positives = 97/162 (59%)

Query:    30 TDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMG---LGG 86
             TD+ ALL FK+ V + +  + ++W  S P+CNW G++CG  ++RVT   HL++G   LGG
Sbjct:    24 TDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVT---HLELGRLQLGG 80

Query:    87 TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
              I   +GNL FL+SLDL  N F G +  E+GQL RL ++    N L G IP  +   S+L
Sbjct:    81 VISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRL 140

Query:   147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
               L L +N L G +P+ L +L+ L  L+   N + G +P+ +
Sbjct:   141 LNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSL 182

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 7.0e-24, P = 7.0e-24
 Identities = 69/190 (36%), Positives = 106/190 (55%)

Query:     1 MRLSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAHVVDY--RSALANNWAMSSP 58
             M+LS   V   L   L   +  +   +  TD  ALL FK+ V +   R  LA+ W  SSP
Sbjct:     1 MKLSFSLVFNALTLLLQVCIFAQARFSNETDMQALLEFKSQVSENNKREVLAS-WNHSSP 59

Query:    59 ICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQ 118
              CNWIG++CG   +RV +LN     L G I   +GNL FL  L+L  N+F   +  ++G+
Sbjct:    60 FCNWIGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGR 119

Query:   119 LRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN 178
             L RL++++ ++N L G IP+ +   S+L  + L +N L   +P+ L +LSKL +LD   N
Sbjct:   120 LFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKN 179

Query:   179 VIDGSIPSGI 188
              + G+ P+ +
Sbjct:   180 NLTGNFPASL 189

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 59/159 (37%), Positives = 89/159 (55%)

Query:    30 TDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIP 89
             TD+ ALL FK+ V +    +  +W  S P+C+W G+ CGL H+RVT ++   + L G + 
Sbjct:    39 TDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVS 98

Query:    90 SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
               +GNL FL SL+L  N FHG +  E+G L RL++++ + N   G IP  +   S L  L
Sbjct:    99 PFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTL 158

Query:   150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
              L +N L   +P    +LSKL +L    N + G  P+ +
Sbjct:   159 DLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASL 197

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 61/160 (38%), Positives = 91/160 (56%)

Query:    30 TDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIP 89
             +D+ ALL  K+ V + +    + W  S P+C+W  + CG  H+RVT L+   + LGG I 
Sbjct:    24 SDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGVIS 83

Query:    90 SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
               +GNL FL+ LDL+ N+F G +  E+G L RL++++  FN L G IP  +   S+L  L
Sbjct:    84 PSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLLYL 143

Query:   150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIR 189
              L +N+L   +P+ L +L KL  L    N + G  P  IR
Sbjct:   144 DLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIR 183

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 269 (99.8 bits), Expect = 3.1e-22, P = 3.1e-22
 Identities = 64/159 (40%), Positives = 87/159 (54%)

Query:    31 DQSALLAFKAHVVDYRSALANNWAMSS--PICNWIGISCGLPH-QRVTALNHLDMGLGGT 87
             D+ ALL+FK+ ++        +W  S     C W+G+ CG  H  RV  L      L G 
Sbjct:    34 DELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGI 93

Query:    88 IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLR 147
             I   LGNL FL +L L+ N+  G +  EL +L RL+ +   FN LSG IP  +G L+ L 
Sbjct:    94 ISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLS 153

Query:   148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS 186
             +L L NN+L+G IP+SL  L+ L  L    N + GSIPS
Sbjct:   154 VLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPS 192

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2157182 RLK "receptor-like kinase" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 60/181 (33%), Positives = 93/181 (51%)

Query:    10 MLLLQYLTASLATKTLKNITTDQSALLAFKAHVVDYRSALANNWAMSSPI-CNWIGISCG 68
             + L+      L  KT   +TTD   LL+F+  +VD    +  +W       C+W G++C 
Sbjct:    13 LFLITVFLFFLCDKTSLALTTDGVLLLSFRYSIVDDPLYVFRSWRFDDETPCSWRGVTCD 72

Query:    69 LPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFT 128
                + VT L+     L GT+PS+LG+L  L  LDL+ N+ +G     L     LRF+  +
Sbjct:    73 ASSRHVTVLSLPSSNLTGTLPSNLGSLNSLQRLDLSNNSINGSFPVSLLNATELRFLDLS 132

Query:   129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
              N +SG++P   G LS L++L+L +NS  G +PN+L     L  +    N + G IP G 
Sbjct:   133 DNHISGALPASFGALSNLQVLNLSDNSFVGELPNTLGWNRNLTEISLQKNYLSGGIPGGF 192

Query:   189 R 189
             +
Sbjct:   193 K 193

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2115120 AT4G37250 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 8.9e-21, P = 8.9e-21
 Identities = 66/164 (40%), Positives = 92/164 (56%)

Query:    28 ITTDQSALLAFKAHV-VDYRSALAN-NWAMSSPICNWIGISCGLPHQRVTALNHLDMGLG 85
             + +D   L+ FK+ V VD  S L   N+   SP C+W GISC     +V  L+  +  L 
Sbjct:    22 LNSDGLVLMKFKSSVLVDPLSLLQTWNYKHESP-CSWRGISCN-NDSKVLTLSLPNSQLL 79

Query:    86 GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSK 145
             G+IPS LG+LL L SLDL+ N+F+G L       R LRF+  + N +SG IP+ IG L  
Sbjct:    80 GSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHN 139

Query:   146 LRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIR 189
             L  L+L +N+L G +P +L +L  L ++    N   G IP G R
Sbjct:   140 LLTLNLSDNALAGKLPTNLASLRNLTVVSLENNYFSGEIPGGWR 183

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.8e-20, P = 1.8e-20
 Identities = 62/188 (32%), Positives = 103/188 (54%)

Query:     1 MRLSIFFVPMLLLQYLTASLATKTLKNITTDQSALLAFKAH-VVDYRSALANNWAMSSPI 59
             M+L +  + +LLL +++ S    T+    T+  ALL+ K+   +D  S L  +W +S+  
Sbjct:     1 MKLLLLLL-LLLLLHISHSF---TVAKPITELHALLSLKSSFTIDEHSPLLTSWNLSTTF 56

Query:    60 CNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQL 119
             C+W G++C +  + VT+L+   + L GT+ S + +L  L +L L  N   G +  ++  L
Sbjct:    57 CSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSDVAHLPLLQNLSLAANQISGPIPPQISNL 116

Query:   120 RRLRFISFTFNKLSGSIPTWIGV-LSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN 178
               LR ++ + N  +GS P  +   L  LR+L L NN+LTG +P SL NL++L  L    N
Sbjct:   117 YELRHLNLSNNVFNGSFPDELSSGLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGN 176

Query:   179 VIDGSIPS 186
                G IP+
Sbjct:   177 YFSGKIPA 184

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2170668 AT5G62710 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 63/160 (39%), Positives = 87/160 (54%)

Query:    28 ITTDQSALLAFKAHVVDYRSALANNWAMS--SPICNWIGISCGLPHQRVTALNHLDMGLG 85
             +T D  ALL  K+   D R++L  NW  S  SP C+W G+SC    QRV ++N   M LG
Sbjct:    24 LTLDGFALLELKSGFNDTRNSL-ENWKDSDESP-CSWTGVSCNPQDQRVVSINLPYMQLG 81

Query:    86 GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSK 145
             G I   +G L  L  L L  N+ HG++ +E+     LR +    N L G IP  +G L+ 
Sbjct:    82 GIISPSIGKLSRLQRLALHQNSLHGNIPNEITNCTELRAMYLRANFLQGGIPPDLGNLTF 141

Query:   146 LRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP 185
             L IL L +N+L G IP+S+  L++L  L+   N   G IP
Sbjct:   142 LTILDLSSNTLKGAIPSSISRLTRLRSLNLSTNFFSGEIP 181

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XI001207	hypothetical protein (255 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.VI.2319.1	hypothetical protein (308 aa)			•						0.476
	eugene3.162250001	hypothetical protein (262 aa)			•						0.424
	fgenesh4_pg.C_scaffold_20023000001	hypothetical protein (307 aa)			•						0.415
	fgenesh4_pg.C_scaffold_1268000001	hypothetical protein (327 aa)			•						0.406

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	205
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-23
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-04
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.9 bits (236), Expect = 9e-23
 Identities = 57/133 (42%), Positives = 76/133 (57%), Gaps = 3/133 (2%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
           ++L  LD+G   L G IP+ L NL  L  L L  N   G +  ELGQ++ L++I   +N 
Sbjct: 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223

Query: 132 LSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNL 191
           LSG IP  IG L+ L  L L  N+LTG IP+SL NL  L+ L    N + G IP  I +L
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 192 SNLFNLNLGYNNL 204
             L +L+L  N+L
Sbjct: 284 QKLISLDLSDNSL 296

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.1 bits (213), Expect = 1e-19
 Identities = 57/171 (33%), Positives = 94/171 (54%), Gaps = 5/171 (2%)

Query: 35  LLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGN 94
           LL+FK+ + D    L+N W  S+ +C W GI+C     RV +++     + G I S +  
Sbjct: 34  LLSFKSSINDPLKYLSN-WNSSADVCLWQGITCN-NSSRVVSIDLSGKNISGKISSAIFR 91

Query: 95  LLFLMSLDLTLNNFHGHLAHELGQL-RRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN 153
           L ++ +++L+ N   G +  ++      LR+++ + N  +GSIP   G +  L  L L N
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSN 149

Query: 154 NSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           N L+G IPN + + S L++LD   NV+ G IP+ + NL++L  L L  N L
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 81.4 bits (201), Expect = 5e-18
 Identities = 48/121 (39%), Positives = 65/121 (53%)

Query: 84  LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
           L G IP  LG +  L  + L  NN  G + +E+G L  L  +   +N L+G IP+ +G L
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259

Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNN 203
             L+ L L  N L+G IP S+F+L KL  LD   N + G IP  +  L NL  L+L  NN
Sbjct: 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319

Query: 204 L 204
            
Sbjct: 320 F 320

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 79.9 bits (197), Expect = 2e-17
 Identities = 55/145 (37%), Positives = 79/145 (54%), Gaps = 5/145 (3%)

Query: 65  ISCGLPHQ--RVTALNHLDM---GLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQL 119
           +S  +P++   +T+LNHLD+    L G IPS LGNL  L  L L  N   G +   +  L
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 120 RRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNV 179
           ++L  +  + N LSG IP  +  L  L IL L +N+ TG IP +L +L +L++L    N 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 180 IDGSIPSGIRNLSNLFNLNLGYNNL 204
             G IP  +   +NL  L+L  NNL
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNL 368

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.2 bits (172), Expect = 3e-14
 Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 62  WIGISCGLPHQR----VTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELG 117
           W G  C     +    +  L   + GL G IP+ +  L  L S++L+ N+  G++   LG
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG 463

Query: 118 QLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
            +  L  +  ++N  +GSIP  +G L+ LRIL+L  NSL+G +P +   L    +  A F
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA---LGGRLLHRASF 520

Query: 178 NVIDGSIPSGIRNL 191
           N  D +   GI  L
Sbjct: 521 NFTDNAGLCGIPGL 534

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 45/133 (33%), Positives = 64/133 (48%)

Query: 72  QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
           Q++ +L+  D  L G IP  +  L  L  L L  NNF G +   L  L RL+ +    NK
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343

Query: 132 LSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNL 191
            SG IP  +G  + L +L L  N+LTG IP  L +   L  L    N ++G IP  +   
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403

Query: 192 SNLFNLNLGYNNL 204
            +L  + L  N+ 
Sbjct: 404 RSLRRVRLQDNSF 416

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 84  LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
           L G I S   ++  L  L L  N F G L    G  +RL  +  + N+ SG++P  +G L
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSL 498

Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNN 203
           S+L  L L  N L+G IP+ L +  KL  LD   N + G IP+    +  L  L+L  N 
Sbjct: 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558

Query: 204 L 204
           L
Sbjct: 559 L 559

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 40/107 (37%), Positives = 58/107 (54%)

Query: 98  LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLT 157
           L +LDL+ N F G +  +LG L  L  +  + NKLSG IP  +    KL  L L +N L+
Sbjct: 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 158 GLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           G IP S   +  L  LD   N + G IP  + N+ +L  +N+ +N+L
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.6 bits (139), Expect = 7e-10
 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 68  GLPHQ-RVTALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLR 123
           GLP       L +LD+      G +P  LG+L  LM L L+ N   G +  EL   ++L 
Sbjct: 467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526

Query: 124 FISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGS 183
            +  + N+LSG IP     +  L  L L  N L+G IP +L N+  L  ++   N + GS
Sbjct: 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586

Query: 184 IPS 186
           +PS
Sbjct: 587 LPS 589

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 31/73 (42%), Positives = 45/73 (61%)

Query: 132 LSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNL 191
           L G IP  I  L  L+ ++L  NS+ G IP SL +++ LE+LD  +N  +GSIP  +  L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 192 SNLFNLNLGYNNL 204
           ++L  LNL  N+L
Sbjct: 490 TSLRILNLNGNSL 502

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 41/122 (33%), Positives = 55/122 (45%)

Query: 84  LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
             G IP  L +L  L  L L  N F G +   LG+   L  +  + N L+G IP  +   
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS 379

Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNN 203
             L  L L +NSL G IP SL     L  +    N   G +PS    L  ++ L++  NN
Sbjct: 380 GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439

Query: 204 LQ 205
           LQ
Sbjct: 440 LQ 441

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 1/132 (0%)

Query: 71  HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFN 130
           H  +T L+     L G IP  L +   L  L L  N+  G +   LG  R LR +    N
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414

Query: 131 KLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRN 190
             SG +P+    L  +  L + NN+L G I +  +++  L+ML    N   G +P    +
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474

Query: 191 LSNLFNLNLGYN 202
              L NL+L  N
Sbjct: 475 -KRLENLDLSRN 485

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 48.3 bits (115), Expect = 8e-07
 Identities = 45/140 (32%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 67  CGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHEL---GQLRRLR 123
             LP  R+  L        G IP +LG    L  LDL+ NN  G +   L   G L +L 
Sbjct: 329 TSLP--RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386

Query: 124 FISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGS 183
             S   N L G IP  +G    LR + L +NS +G +P+    L  +  LD   N + G 
Sbjct: 387 LFS---NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443

Query: 184 IPSGIRNLSNLFNLNLGYNN 203
           I S   ++ +L  L+L  N 
Sbjct: 444 INSRKWDMPSLQMLSLARNK 463

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 25/80 (31%), Positives = 43/80 (53%)

Query: 84  LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
           L G IP  L +   L+SLDL+ N   G +     ++  L  +  + N+LSG IP  +G +
Sbjct: 511 LSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570

Query: 144 SKLRILSLCNNSLTGLIPNS 163
             L  +++ +N L G +P++
Sbjct: 571 ESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
            L+ L L NN LT +   +   L  L++LD   N +    P     L +L +L+L  NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 16/60 (26%), Positives = 27/60 (45%)

Query: 121 RLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVI 180
            L+ +  + N+L+         L  L++L L  N+LT + P +   L  L  LD   N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 149 LSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           L L N  L G IPN +  L  L+ ++   N I G+IP  + ++++L  L+L YN+ 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 30 TDQSALLAFKAHVVDYRSALANNW-AMSSPICNWIGISC 67
           D+ ALLAFK+ +    S   ++W   SS  C+W G++C
Sbjct: 3  DDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 48/152 (31%), Positives = 64/152 (42%), Gaps = 7/152 (4%)

Query: 56  SSPICNWIGISCGLPHQRVTALNHLDMGLGGT--IPSHLGNLLF-LMSLDLTLNNFHGHL 112
           S  +      S       +T L  LD+       IP  +G L   L  LDL+ N     L
Sbjct: 97  SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESL 155

Query: 113 AHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEM 172
              L  L  L+ +  +FN LS  +P  +  LS L  L L  N ++  +P  +  LS LE 
Sbjct: 156 PSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEE 213

Query: 173 LDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           LD   N I   + S + NL NL  L L  N L
Sbjct: 214 LDLSNNSII-ELLSSLSNLKNLSGLELSNNKL 244

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN03150	623	hypothetical protein; Provisional	99.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
PLN03150	623	hypothetical protein; Provisional	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.46
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.45
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.43
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.42
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.39
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.29
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.28
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.26
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.25
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.22
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.2
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.17
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.09
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.08
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.07
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.04
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.96
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.96
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.94
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.9
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.82
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.79
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.54
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.51
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.47
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.44
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.44
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.4
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.39
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.39
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.34
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.33
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.24
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.22
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.19
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.95
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.86
PRK15386	426	type III secretion protein GogB; Provisional	97.75
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.59
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.41
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.38
PRK15386	426	type III secretion protein GogB; Provisional	97.34
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.34
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.33
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.32
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.19
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.85
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.83
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.77
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.67
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.44
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.41
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.23
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.84
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.35
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.92
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.82
smart00370	26	LRR Leucine-rich repeats, outliers.	92.82
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.63
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.14
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.39
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.92
KOG1947	482	consensus Leucine rich repeat proteins, some prote	86.91
KOG4308	478	consensus LRR-containing protein [Function unknown	86.08
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.53
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.53
KOG1947	482	consensus Leucine rich repeat proteins, some prote	80.49

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=4.5e-26  Score=206.44  Aligned_cols=175  Identities=33%  Similarity=0.583  Sum_probs=124.3

Q ss_pred             ChhhHHHHHHHHhccccCCCCcCCCCCCCCCCCcccceeeCCCCCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCc
Q 043006           28 ITTDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNN  107 (205)
Q Consensus        28 ~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~  107 (205)
                      .+.|+.+|++||+.+. ++.....+|+...++|.|.|+.|+. .++|+.|+++++.+.|.+|..+..+++|++|++++|.
T Consensus        27 ~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~  104 (968)
T PLN00113         27 HAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ  104 (968)
T ss_pred             CHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence            3579999999999996 5666778998888999999999984 4689999999999999888889999999999999999


Q ss_pred             cccccccccC-CCCCCcEEEcccCcCCCCC----------------------CccccCCCCCCEEEcccccCCCCCchhc
Q 043006          108 FHGHLAHELG-QLRRLRFISFTFNKLSGSI----------------------PTWIGVLSKLRILSLCNNSLTGLIPNSL  164 (205)
Q Consensus       108 ~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~----------------------p~~~~~l~~L~~l~l~~n~l~~~~p~~~  164 (205)
                      +++.+|..+. .+++|++|++++|.+++.+                      |..++.+++|++|++++|.+.+.+|..+
T Consensus       105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~  184 (968)
T PLN00113        105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL  184 (968)
T ss_pred             cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence            8887876644 6666666666666665444                      4444455555555555555555555555


Q ss_pred             cCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          165 FNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       165 ~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ..+++|++|++++|.+.+.+|..++++++|++|++++|.+
T Consensus       185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence            5555555555555555555555555555555555555543

>PLN03150 hypothetical protein; Provisional

Probab=99.80  E-value=8.3e-19  Score=151.83  Aligned_cols=156  Identities=28%  Similarity=0.440  Sum_probs=131.3

Q ss_pred             CChhhHHHHHHHHhccccCCCCcCCCCCCCCC---CCcccceeeCCCC----CcEEEEEcCCCCccccCCccccCCCCCC
Q 043006           27 NITTDQSALLAFKAHVVDYRSALANNWAMSSP---ICNWIGISCGLPH----QRVTALNHLDMGLGGTIPSHLGNLLFLM   99 (205)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~---~c~w~gv~c~~~~----~~l~~L~l~~~~l~~~~p~~l~~l~~L~   99 (205)
                      ..++|..+|..+|..+.. +.  ..+|.+..+   .|.|.||.|....    ..++.|+++++.+.|.+|..+..+++|+
T Consensus       369 t~~~~~~aL~~~k~~~~~-~~--~~~W~g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~  445 (623)
T PLN03150        369 TLLEEVSALQTLKSSLGL-PL--RFGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQ  445 (623)
T ss_pred             cCchHHHHHHHHHHhcCC-cc--cCCCCCCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCC
Confidence            456799999999998863 22  237864321   1279999995321    3589999999999999999999999999


Q ss_pred             EEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCC-CCCCeeecccC
Q 043006          100 SLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNL-SKLEMLDAMFN  178 (205)
Q Consensus       100 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l-~~L~~L~ls~n  178 (205)
                      .|++++|.++|.+|..++.+++|+.|++++|.++|.+|+.++++++|++|++++|+++|.+|..+... .++..+++.+|
T Consensus       446 ~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             EEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999999988764 46778899988


Q ss_pred             cCcccCC
Q 043006          179 VIDGSIP  185 (205)
Q Consensus       179 ~l~~~~p  185 (205)
                      ......|
T Consensus       526 ~~lc~~p  532 (623)
T PLN03150        526 AGLCGIP  532 (623)
T ss_pred             ccccCCC
Confidence            7654444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.77  E-value=1.3e-18  Score=157.96  Aligned_cols=132  Identities=35%  Similarity=0.530  Sum_probs=80.4

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      .+++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|+++
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG  220 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence            45555555555555556566666666666666666665666666666666666666666665566666666666666666


Q ss_pred             cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +|.+++.+|..+..+++|++|++++|.+.+.+|..++++++|++|++++|.+
T Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence            6666655666566666666666666666555555555555666666555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=1.6e-18  Score=123.77  Aligned_cols=130  Identities=27%  Similarity=0.430  Sum_probs=112.9

Q ss_pred             CCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           71 HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        71 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      ...++.|.+++|.++ .+|+.+..+.+|+.|++.+|+++ .+|.+++.++.|+.|++..|++. .+|..|+.++.|+.||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            367899999999998 78888999999999999999998 78999999999999999999998 8999999999999999


Q ss_pred             cccccCCC-CCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          151 LCNNSLTG-LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       151 l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +..|++.. .+|..|..+..|+-|++++|.+. .+|..++++++|+.|.+..|.+
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl  162 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL  162 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence            99998874 56777777777888888888876 7777788888888887777753

>PLN03150 hypothetical protein; Provisional

Probab=99.57  E-value=9.5e-15  Score=126.74  Aligned_cols=107  Identities=29%  Similarity=0.513  Sum_probs=100.4

Q ss_pred             CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecc
Q 043006           97 FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAM  176 (205)
Q Consensus        97 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls  176 (205)
                      .++.|+|++|.++|.+|..+..+++|+.|++++|.+.|.+|..++.+++|+.|++++|+++|.+|+.++.+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCcccCChhhcCC-CCCCEEEccCCC
Q 043006          177 FNVIDGSIPSGIRNL-SNLFNLNLGYNN  203 (205)
Q Consensus       177 ~n~l~~~~p~~~~~l-~~L~~L~ls~N~  203 (205)
                      +|.++|.+|..++.. .++..+++++|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCc
Confidence            999999999988764 467788988885

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=5.1e-17  Score=116.15  Aligned_cols=130  Identities=25%  Similarity=0.419  Sum_probs=111.9

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCC-CCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLS-GSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~l~  150 (205)
                      .+++.|++.+|.++ .+|.+++.+++|+.|+++.|.+. .+|..|+.++.|+.||+++|.+. ..+|..|..++.|+.|.
T Consensus        56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence            56788899999987 78889999999999999999987 78999999999999999988874 45787788888888889


Q ss_pred             cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++.|.+. .+|..++.+++|++|.+.+|.+- ++|..++.+..|++|.+++|.++
T Consensus       134 l~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             hcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence            9999888 77888888999999999888887 78888888888888888888753

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.46  E-value=1.1e-14  Score=116.32  Aligned_cols=130  Identities=32%  Similarity=0.436  Sum_probs=113.5

Q ss_pred             cEEEEEcCCCCcc-----------------------ccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEccc
Q 043006           73 RVTALNHLDMGLG-----------------------GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTF  129 (205)
Q Consensus        73 ~l~~L~l~~~~l~-----------------------~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  129 (205)
                      -|+.++++.|++.                       +-+|..++.+++|+.|++++|.+. .+|.+++.+..||+++++.
T Consensus       389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~  467 (565)
T KOG0472|consen  389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSF  467 (565)
T ss_pred             ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccc
Confidence            4888888888643                       235556788899999999999987 7899999999999999999


Q ss_pred             CcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          130 NKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       130 n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      |+|. .+|..+..+..++.+-.++|++...-|..+.++.+|..||+.+|.+. .+|+.++++.+|++|++++|+|+
T Consensus       468 NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  468 NRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            9998 88988888888888888889998666677999999999999999998 99999999999999999999874

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.45  E-value=5.6e-15  Score=122.70  Aligned_cols=132  Identities=26%  Similarity=0.264  Sum_probs=86.0

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCC------
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSK------  145 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~------  145 (205)
                      ..+++|+++.|+++..-...+.+++.|+.|++++|.|...-+++|.-.++|+.|+++.|.++.-.+.+|..+..      
T Consensus       269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL  348 (873)
T KOG4194|consen  269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL  348 (873)
T ss_pred             cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence            45777888888877655666777888888888888877666777777778888888888777333344444444      


Q ss_pred             ------------------CCEEEcccccCCCCCc---hhccCCCCCCeeecccCcCcccCCh-hhcCCCCCCEEEccCCC
Q 043006          146 ------------------LRILSLCNNSLTGLIP---NSLFNLSKLEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNN  203 (205)
Q Consensus       146 ------------------L~~l~l~~n~l~~~~p---~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~  203 (205)
                                        |++|||++|.+++.+.   ..|.++++|+.|++.+|++. .||. .|..+.+|++|||.+|.
T Consensus       349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCCCc
Confidence                              4555555554443332   23455666666666666665 4553 46667777777777775


Q ss_pred             C
Q 043006          204 L  204 (205)
Q Consensus       204 l  204 (205)
                      |
T Consensus       428 i  428 (873)
T KOG4194|consen  428 I  428 (873)
T ss_pred             c
Confidence            4

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.43  E-value=1.7e-14  Score=121.05  Aligned_cols=130  Identities=31%  Similarity=0.408  Sum_probs=98.0

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccc-cCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHE-LGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      ..++.|+++.|.+. .+|..+...+.+-+|++++|+|. .+|.. |-+++.|-+||+++|++. .+|+.+..+..|++|.
T Consensus       103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~  179 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLK  179 (1255)
T ss_pred             ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhh
Confidence            56778888888876 67777777778888888888887 56654 456777778888888887 7777777777777777


Q ss_pred             cccccCC-------------------------CCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          151 LCNNSLT-------------------------GLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       151 l~~n~l~-------------------------~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      |++|++.                         ..+|..+..+.+|+.+|+|.|++. .+|+.+-++++|+.|+||+|+|+
T Consensus       180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it  258 (1255)
T KOG0444|consen  180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT  258 (1255)
T ss_pred             cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence            7777654                         125666667777888888888887 77888888888888888888764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.42  E-value=6.6e-14  Score=116.45  Aligned_cols=132  Identities=23%  Similarity=0.176  Sum_probs=72.5

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      .+..|.++.|+++..-+..|..+++|+.|++..|.+...-..+|..+++|+.|.+.+|.+.......|..+.++++|+|.
T Consensus       198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~  277 (873)
T KOG4194|consen  198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE  277 (873)
T ss_pred             hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence            45555555555553333344446666666666666553223344555555555555555442222334555556666666


Q ss_pred             cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      .|+++..-...+.++.+|+.|++|+|.|....+.+|...++|++|+|++|+|
T Consensus       278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI  329 (873)
T ss_pred             cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence            6666644444555666666666666666655555566666666666666655

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.39  E-value=9.8e-15  Score=116.53  Aligned_cols=126  Identities=32%  Similarity=0.346  Sum_probs=97.2

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcccc-CCCCCCEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIG-VLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~l~  150 (205)
                      +++.++|...|-++ .+|+.++.+.+|..|+++.|.+. .+| +|.++..|+++.+..|+++ .+|..+. +++++.+||
T Consensus       183 ~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLD  258 (565)
T KOG0472|consen  183 KRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLD  258 (565)
T ss_pred             HHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeee
Confidence            34555565555554 67777777777777777777776 566 6777777888888888777 6775544 788888889


Q ss_pred             cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++.|+++ .+|..++-+++|.+||+|+|.++ .+|.+++++ .|+.|-+-+|++
T Consensus       259 LRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  259 LRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             ccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence            8888888 77888888888888999988888 678788888 888888888875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.31  E-value=1.5e-13  Score=115.48  Aligned_cols=128  Identities=28%  Similarity=0.399  Sum_probs=93.0

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccc-ccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG-HLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++|.+.+|++. .+-.++..+++|+.+.++.|+++. -+|.++..+..|.+||++.|++. ..|..+-..+++.+|+|
T Consensus        56 kLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNL  133 (1255)
T KOG0444|consen   56 KLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNL  133 (1255)
T ss_pred             hhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEc
Confidence            4556666666655 344456666666666776666652 35777777888888888888887 77777777778888888


Q ss_pred             ccccCCCCCch-hccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPN-SLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~-~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|++. .+|. .+.++..|-+||+|+|++. .+|+++.++..|+.|+|++|++
T Consensus       134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             ccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence            888887 5554 4557778888888888887 7788888888888888888865

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.29  E-value=3.7e-12  Score=93.08  Aligned_cols=122  Identities=30%  Similarity=0.313  Sum_probs=51.7

Q ss_pred             CcEEEEEcCCCCccccCCcccc-CCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccc-cCCCCCCEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLG-NLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWI-GVLSKLRIL  149 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l  149 (205)
                      .+++.|++.+|.++. +. .+. .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++ .+++.+ ..+++|++|
T Consensus        19 ~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence            357889999999873 32 354 4778999999999998 444 4778899999999999998 565544 468999999


Q ss_pred             EcccccCCCCC-chhccCCCCCCeeecccCcCcccCCh----hhcCCCCCCEEEc
Q 043006          150 SLCNNSLTGLI-PNSLFNLSKLEMLDAMFNVIDGSIPS----GIRNLSNLFNLNL  199 (205)
Q Consensus       150 ~l~~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~p~----~~~~l~~L~~L~l  199 (205)
                      ++++|++...- -..+..+++|+.|++.+|.+. ..+.    .+..+++|+.||-
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETT
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCC
Confidence            99999987421 145678899999999999998 4454    3567889988874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.28  E-value=1.4e-10  Score=102.25  Aligned_cols=118  Identities=27%  Similarity=0.369  Sum_probs=82.0

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      +.+.|++++++++ .+|..+.  +.++.|++++|.++ .+|..+.  .+|++|++++|.++ .+|..+.  ++|+.|+++
T Consensus       179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            3467777777776 4665553  46888888888888 5676543  57888888888887 6676543  467788888


Q ss_pred             cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      +|.+. .+|..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|+|+
T Consensus       250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt  296 (754)
T PRK15370        250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR  296 (754)
T ss_pred             CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence            88777 5565553  46777888877777 5666443  46777777777653

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.28  E-value=3.5e-13  Score=111.75  Aligned_cols=127  Identities=31%  Similarity=0.432  Sum_probs=110.9

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.++++.|.+. .+|..++.++ |+.|-+++|+++ .+|..++.+.+|..|+.+.|.+. .+|..++.+.+|+.+.+
T Consensus       121 ~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~v  196 (722)
T KOG0532|consen  121 EALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNV  196 (722)
T ss_pred             hHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHH
Confidence            45677888888887 6787787776 888899999987 78888888888999999999988 88888999999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ..|++. .+|+.+..++ |..||+|.|+++ .+|-.|.+|+.|++|-|.+|.++
T Consensus       197 rRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  197 RRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             hhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence            999998 6788888666 899999999998 99999999999999999999874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.26  E-value=2.1e-11  Score=107.14  Aligned_cols=56  Identities=30%  Similarity=0.335  Sum_probs=40.1

Q ss_pred             CCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       145 ~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      +|+.|++++|.++ .+|..   ..+|+.|++++|+++ .+|..++++++|+.+++++|+|+
T Consensus       403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence            4455555555555 23432   235677788888887 78888999999999999999875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.25  E-value=2.8e-13  Score=117.56  Aligned_cols=127  Identities=26%  Similarity=0.352  Sum_probs=107.8

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccc-cCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHE-LGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      ..++.|++.+|.++...-+.+.++++|+.|++++|++. .+|.. +.++..|+.|++++|+++ .+|..+..+..|++|.
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~  436 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR  436 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence            45778899999999888778999999999999999997 56654 678899999999999999 8999999999999999


Q ss_pred             cccccCCCCCchhccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEEccCCC
Q 043006          151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNN  203 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~  203 (205)
                      ..+|++. .+| .+..++.|+.+|+|.|+++. .+|... .-++|++||+++|.
T Consensus       437 ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  437 AHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT  487 (1081)
T ss_pred             hcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence            9999999 778 68899999999999999972 344322 22789999999995

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.25  E-value=7.1e-12  Score=91.61  Aligned_cols=108  Identities=27%  Similarity=0.365  Sum_probs=41.6

Q ss_pred             ccCCCCCCEEEccCCccccccccccC-CCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhc-cCCCC
Q 043006           92 LGNLLFLMSLDLTLNNFHGHLAHELG-QLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSL-FNLSK  169 (205)
Q Consensus        92 l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~-~~l~~  169 (205)
                      +.+..++++|++++|.|+ .+. .++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|.++. +++.+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence            344557899999999998 443 354 5789999999999998 554 57789999999999999994 44444 46899


Q ss_pred             CCeeecccCcCcccCC--hhhcCCCCCCEEEccCCCCC
Q 043006          170 LEMLDAMFNVIDGSIP--SGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       170 L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l~  205 (205)
                      |++|++++|++.. +-  ..++.+++|+.|++.+|+++
T Consensus        90 L~~L~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   90 LQELYLSNNKISD-LNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             --EEE-TTS---S-CCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CCEEECcCCcCCC-hHHhHHHHcCCCcceeeccCCccc
Confidence            9999999999973 22  34778999999999999863

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.25  E-value=2.3e-12  Score=103.09  Aligned_cols=132  Identities=29%  Similarity=0.319  Sum_probs=56.1

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCC---CCEEEccCCcccc----ccccccCCC-CCCcEEEcccCcCCCC----CCcc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLF---LMSLDLTLNNFHG----HLAHELGQL-RRLRFISFTFNKLSGS----IPTW  139 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~---L~~L~l~~n~~~~----~~p~~~~~l-~~L~~L~l~~n~l~~~----~p~~  139 (205)
                      .+++.|+++++.+.+..+..+..+..   |++|++++|.+++    .+...+..+ ++|+.+++++|.+++.    ++..
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~  160 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA  160 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence            34555555555554333333333333   5555555555441    112223333 4555555555555421    1122


Q ss_pred             ccCCCCCCEEEcccccCCCC----CchhccCCCCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCC
Q 043006          140 IGVLSKLRILSLCNNSLTGL----IPNSLFNLSKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNN  203 (205)
Q Consensus       140 ~~~l~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~  203 (205)
                      +..+++|++|++++|.+++.    ++..+...++|+.|++++|.+++.    ++..+.++++|++|++++|.
T Consensus       161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence            33344455555555544421    122223334455555555544321    12223344445555554444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.22  E-value=1.4e-12  Score=101.08  Aligned_cols=128  Identities=27%  Similarity=0.286  Sum_probs=108.1

Q ss_pred             CCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           71 HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        71 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      +..++.+|+++|.++ .++.+..-++.+++|+++.|.+. .+.. +..+.+|+.||+++|.++ .+..+..++.+.++|.
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence            356889999999997 78888888999999999999997 4443 778899999999999998 7777778889999999


Q ss_pred             cccccCCCCCchhccCCCCCCeeecccCcCcccCC--hhhcCCCCCCEEEccCCCCC
Q 043006          151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP--SGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l~  205 (205)
                      +++|.+...  ..+..+.+|..||+++|+|. ..-  ..+++++.|+++.+.+|+++
T Consensus       359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhhhHhhh--hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCcc
Confidence            999988732  34677889999999999997 333  35889999999999999874

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.20  E-value=5.9e-12  Score=100.78  Aligned_cols=132  Identities=23%  Similarity=0.214  Sum_probs=65.7

Q ss_pred             cEEEEEcCCCCcccc----CCccccCCCCCCEEEccCCccccc----cccccCCCCCCcEEEcccCcCCCC----CCccc
Q 043006           73 RVTALNHLDMGLGGT----IPSHLGNLLFLMSLDLTLNNFHGH----LAHELGQLRRLRFISFTFNKLSGS----IPTWI  140 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~  140 (205)
                      +++.+++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+
T Consensus       138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~  217 (319)
T cd00116         138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL  217 (319)
T ss_pred             CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh
Confidence            455555555555421    222344444555666655555521    222233345666666666655422    12234


Q ss_pred             cCCCCCCEEEcccccCCCCCchhcc-----CCCCCCeeecccCcCc----ccCChhhcCCCCCCEEEccCCCC
Q 043006          141 GVLSKLRILSLCNNSLTGLIPNSLF-----NLSKLEMLDAMFNVID----GSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       141 ~~l~~L~~l~l~~n~l~~~~p~~~~-----~l~~L~~L~ls~n~l~----~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ..+++|++|++++|.+++.....+.     ..+.|+.|++++|.++    ..+...+..+++|+++++++|.+
T Consensus       218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence            4455666666666666542121111     1256666666666664    12233344556666777776665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.17  E-value=6.3e-11  Score=104.30  Aligned_cols=119  Identities=27%  Similarity=0.399  Sum_probs=75.1

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcccc-----------
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIG-----------  141 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-----------  141 (205)
                      .++.|++++|.+. .+|..+.  ..|++|++++|+++ .+|..+.  ++|++|++++|+++ .+|..+.           
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N  314 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSN  314 (754)
T ss_pred             cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCC
Confidence            5778888888876 5666554  36778888887777 4665443  46777777777776 4443221           


Q ss_pred             --------CCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          142 --------VLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       142 --------~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                              ..++|+.|++++|.+++ +|..+.  ++|+.|++++|+++ .+|..+.  ++|+.|++++|+|
T Consensus       315 ~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~L  379 (754)
T PRK15370        315 SLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNAL  379 (754)
T ss_pred             ccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcC
Confidence                    11356666666666653 454332  56777777777776 5665442  4677777777765

>PLN03210 Resistant to P

Probab=99.09  E-value=6.3e-10  Score=103.08  Aligned_cols=126  Identities=18%  Similarity=0.139  Sum_probs=99.1

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|..-..+|..   .++|++|++
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L  853 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL  853 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence            467888888887777888888899999999998876555777665 6888999999887654455543   367889999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN  202 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N  202 (205)
                      ++|.++ .+|..+..+++|+.|++++|+--..+|..+..+++|+.++++++
T Consensus       854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence            999888 67888889999999999885433367877788888888888776

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.09  E-value=1e-09  Score=101.64  Aligned_cols=124  Identities=28%  Similarity=0.312  Sum_probs=58.4

Q ss_pred             EEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 043006           74 VTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN  153 (205)
Q Consensus        74 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~  153 (205)
                      ++.|.+.++.+. .+|..+ .+.+|++|++++|.+. .++..+..+++|+.++++++.....+|. +..+++|++|++++
T Consensus       591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~  666 (1153)
T PLN03210        591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD  666 (1153)
T ss_pred             cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence            444444444432 334333 2345555555555554 3444444555555555554433224442 44455555555555


Q ss_pred             ccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006          154 NSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN  202 (205)
Q Consensus       154 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N  202 (205)
                      |.....+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc  714 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence            54334455555555555555555543333444433 3444444444443

syringae 6; Provisional

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.08  E-value=6.5e-11  Score=71.70  Aligned_cols=60  Identities=43%  Similarity=0.544  Sum_probs=34.6

Q ss_pred             CCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       145 ~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +|+++++++|+++...+..|..+++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455566666665543334555566666666666666544444556666666666666653

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.07  E-value=1e-11  Score=99.21  Aligned_cols=130  Identities=25%  Similarity=0.260  Sum_probs=113.5

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEccc-CcCCCCCC-ccccCCCCCCEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTF-NKLSGSIP-TWIGVLSKLRIL  149 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p-~~~~~l~~L~~l  149 (205)
                      ...+.|++..|.|+..-|..|+.+++|++|||+.|+|+..-|+.|..++++..|-+-+ |+|+ .+| ..|.++.+++.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            5678999999999966667899999999999999999988899999999888776655 9999 666 568999999999


Q ss_pred             EcccccCCCCCchhccCCCCCCeeecccCcCcccCCh-hhcCCCCCCEEEccCCC
Q 043006          150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNN  203 (205)
Q Consensus       150 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~  203 (205)
                      .+.-|++.-..++.|..++++..|.+.+|.+. .++. .+..+.+++.+.+..|.
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCc
Confidence            99999999777888999999999999999998 7777 67888888888888876

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.04  E-value=9.9e-10  Score=96.75  Aligned_cols=116  Identities=28%  Similarity=0.278  Sum_probs=73.6

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      .++.|++.+|.++ .+|..   +++|++|++++|+++ .+|..   .++|+.|++++|.++ .+|..   .++|+.|+++
T Consensus       223 ~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls  290 (788)
T PRK15387        223 HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL---PSGLCKLWIF  290 (788)
T ss_pred             CCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc---hhhcCEEECc
Confidence            4666777777666 34432   356777777777776 44532   356667777777666 45542   2457777888


Q ss_pred             cccCCCCCchhccCCCCCCeeecccCcCcccCCh---hhcC-------------C-CCCCEEEccCCCCC
Q 043006          153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS---GIRN-------------L-SNLFNLNLGYNNLQ  205 (205)
Q Consensus       153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~---~~~~-------------l-~~L~~L~ls~N~l~  205 (205)
                      +|+++ .+|.   ..++|+.|++++|.++ .+|.   .+..             + .+|++|++++|+|+
T Consensus       291 ~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls  355 (788)
T PRK15387        291 GNQLT-SLPV---LPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA  355 (788)
T ss_pred             CCccc-cccc---cccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCCccC
Confidence            88777 4454   2467899999999888 3443   1111             1 36888888888874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.00  E-value=4.1e-10  Score=68.15  Aligned_cols=59  Identities=31%  Similarity=0.375  Sum_probs=26.5

Q ss_pred             CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccccc
Q 043006           97 FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNS  155 (205)
Q Consensus        97 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~  155 (205)
                      +|++|++++|+++...+..|..+++|++|++++|.++...|..|..+++|+++++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34445555554442222334444445555554444443333344444444444444443

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.96  E-value=8.7e-11  Score=102.37  Aligned_cols=127  Identities=25%  Similarity=0.289  Sum_probs=101.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.++..-...+.++..|++|++++|.++ .+|.++..+..|++|...+|++. ..| .+..++.|+.+|+
T Consensus       383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDL  459 (1081)
T ss_pred             cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEec
Confidence            68999999999998443456888999999999999998 89999999999999999999999 889 7889999999999


Q ss_pred             ccccCCCC-CchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006          152 CNNSLTGL-IPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN  202 (205)
Q Consensus       152 ~~n~l~~~-~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N  202 (205)
                      +.|+++.. +|... ..++|++||+++|.-...--..+..++++...+++-|
T Consensus       460 S~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  460 SCNNLSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             ccchhhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            99999853 33322 3389999999999732122233555666665555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.96  E-value=2.7e-10  Score=94.14  Aligned_cols=102  Identities=33%  Similarity=0.451  Sum_probs=59.5

Q ss_pred             cEEEEEcCCCCccccCCccccCCC-CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLL-FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .++.+++.++.++ .+|+....+. +|+.|++++|.+. .+|..+..++.|+.|+++.|.++ .+|...+..+.|+.+++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            4666777777766 5555555553 6777777777766 45445566666666666666666 55554445566666666


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFN  178 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n  178 (205)
                      ++|+++ .+|........|+++.+++|
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            666665 33443333333444444444

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.94  E-value=1.4e-09  Score=60.85  Aligned_cols=40  Identities=38%  Similarity=0.772  Sum_probs=31.1

Q ss_pred             hhhHHHHHHHHhccccCCCCcCCCCCCC--CCCCcccceeeC
Q 043006           29 TTDQSALLAFKAHVVDYRSALANNWAMS--SPICNWIGISCG   68 (205)
Q Consensus        29 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~w~gv~c~   68 (205)
                      ++|+++|++||+.+..++...+.+|+..  .++|.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            5799999999999987777789999987  699999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.90  E-value=4.2e-11  Score=99.61  Aligned_cols=122  Identities=31%  Similarity=0.456  Sum_probs=90.9

Q ss_pred             EEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccC
Q 043006           77 LNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSL  156 (205)
Q Consensus        77 L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l  156 (205)
                      +.+..|.+- .+|..+.++..|++++|+.|+++ .+|..+..++ |+.|-+++|+++ .+|+.++....|..+|.+.|.+
T Consensus       103 liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei  178 (722)
T KOG0532|consen  103 LILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI  178 (722)
T ss_pred             HHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence            333334443 56777778888888888888887 6676665543 777888888887 7888888778888888888888


Q ss_pred             CCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          157 TGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       157 ~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      . .+|..++.+.+|+.|.+..|++. .+|..+..+ .|..||+|.|+++
T Consensus       179 ~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis  224 (722)
T KOG0532|consen  179 Q-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS  224 (722)
T ss_pred             h-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee
Confidence            8 66777888888888888888887 778777744 5677888888763

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.89  E-value=8.9e-10  Score=91.03  Aligned_cols=105  Identities=37%  Similarity=0.464  Sum_probs=53.8

Q ss_pred             CCCCCCEEEccCCccccccccccCCCC-CCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCe
Q 043006           94 NLLFLMSLDLTLNNFHGHLAHELGQLR-RLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEM  172 (205)
Q Consensus        94 ~l~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~  172 (205)
                      .++.++.+++.+|.++ .+|.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|......+.|+.
T Consensus       114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~  190 (394)
T COG4886         114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN  190 (394)
T ss_pred             cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence            3344555555555555 4444444442 5555555555555 44444555555555555555555 33433334555555


Q ss_pred             eecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006          173 LDAMFNVIDGSIPSGIRNLSNLFNLNLGYN  202 (205)
Q Consensus       173 L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N  202 (205)
                      |++++|.+. .+|........|+.+.+++|
T Consensus       191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         191 LDLSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             eeccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            555555555 45544334444555555555

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.82  E-value=5.2e-10  Score=87.02  Aligned_cols=107  Identities=25%  Similarity=0.347  Sum_probs=82.2

Q ss_pred             ccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCC
Q 043006           92 LGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLE  171 (205)
Q Consensus        92 l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~  171 (205)
                      +...+.|+++|+++|.|+ .+..+..-.+.++.|+++.|.+. .+. .+..+++|+.||+++|.++ .+...-..+-+.+
T Consensus       280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIK  355 (490)
T ss_pred             cchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEe
Confidence            344567888999999988 66666667788999999999887 333 3778889999999999888 3333334566788


Q ss_pred             eeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          172 MLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       172 ~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      .|.++.|.+.  --..++++-+|..||+++|+|
T Consensus       356 tL~La~N~iE--~LSGL~KLYSLvnLDl~~N~I  386 (490)
T KOG1259|consen  356 TLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQI  386 (490)
T ss_pred             eeehhhhhHh--hhhhhHhhhhheeccccccch
Confidence            8889998886  334578888999999999987

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.79  E-value=4.9e-10  Score=89.73  Aligned_cols=125  Identities=26%  Similarity=0.261  Sum_probs=102.7

Q ss_pred             EEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccc-cc
Q 043006           77 LNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN-NS  155 (205)
Q Consensus        77 L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~-n~  155 (205)
                      ++-++.+++ .+|..+..  ..+.++|..|+|+...|..|+.+++|+.||++.|.|+...|+.|.+++++..+.+.+ |+
T Consensus        51 VdCr~~GL~-eVP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   51 VDCRGKGLT-EVPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             EEccCCCcc-cCcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            344455554 45654432  578899999999966667899999999999999999988899999999998888777 89


Q ss_pred             CCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          156 LTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       156 l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++......|+++..++.|.+.-|++.-.....+..++++..|.+..|.+
T Consensus       128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~  176 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI  176 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh
Confidence            9966557899999999999999999855556789999999999988865

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.54  E-value=6e-10  Score=95.36  Aligned_cols=125  Identities=29%  Similarity=0.356  Sum_probs=98.1

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcc-ccCCCCCCEEEc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTW-IGVLSKLRILSL  151 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~l~l  151 (205)
                      .+...++++|.+. .++.++.-++.+++|+|++|++.. .. .+..++.|++||+++|.+. .+|.- ...+. |+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence            4567788888887 778888889999999999999984 33 6788999999999999998 66642 33444 999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccC-ChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSI-PSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|-++..  ..+.++++|+.||+++|-+.+-- -.-++.+..|+.|.|.+|++
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            99988833  35678899999999999887321 11256778888999999975

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.51  E-value=5.3e-08  Score=87.45  Aligned_cols=107  Identities=25%  Similarity=0.306  Sum_probs=76.2

Q ss_pred             CcEEEEEcCCCC--ccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEE
Q 043006           72 QRVTALNHLDMG--LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL  149 (205)
Q Consensus        72 ~~l~~L~l~~~~--l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  149 (205)
                      +.+++|-+.+|.  +....+..|..++.|++||+++|.--+.+|..++.+-+|++|+++++.+. .+|.++.++..|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            456677776665  33222233666788888888877766678888888888888888888887 788888888888888


Q ss_pred             EcccccCCCCCchhccCCCCCCeeecccCc
Q 043006          150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNV  179 (205)
Q Consensus       150 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~  179 (205)
                      ++..+.....+|.....+++|++|.+..-.
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccc
Confidence            888776554556666667888888776544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.47  E-value=1.5e-07  Score=52.80  Aligned_cols=37  Identities=41%  Similarity=0.489  Sum_probs=25.9

Q ss_pred             CCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCc
Q 043006          144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID  181 (205)
Q Consensus       144 ~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~  181 (205)
                      ++|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            46777777777777 55666777777777777777776

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=5.4e-08  Score=79.05  Aligned_cols=62  Identities=27%  Similarity=0.289  Sum_probs=38.3

Q ss_pred             CCCCCCEEEcccccCCCCCc--hhccCCCCCCeeecccCcCccc-CChh-----hcCCCCCCEEEccCCCC
Q 043006          142 VLSKLRILSLCNNSLTGLIP--NSLFNLSKLEMLDAMFNVIDGS-IPSG-----IRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       142 ~l~~L~~l~l~~n~l~~~~p--~~~~~l~~L~~L~ls~n~l~~~-~p~~-----~~~l~~L~~L~ls~N~l  204 (205)
                      .+..|+.|||++|++- ..+  ...+.++.|+.|+++.+.+... +|+.     ...+++|++|+++.|+|
T Consensus       244 i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  244 ILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            3455777777777665 223  3455677777777777776522 3332     23566788888888776

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.44  E-value=1e-08  Score=71.12  Aligned_cols=113  Identities=22%  Similarity=0.266  Sum_probs=90.0

Q ss_pred             CcEEEEEcCCCCcc--ccCCccccCCCCCCEEEccCCccccccccccCC-CCCCcEEEcccCcCCCCCCccccCCCCCCE
Q 043006           72 QRVTALNHLDMGLG--GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQ-LRRLRFISFTFNKLSGSIPTWIGVLSKLRI  148 (205)
Q Consensus        72 ~~l~~L~l~~~~l~--~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~-l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~  148 (205)
                      .....++++.+.+-  ...+..+....+|+..++++|.+. ..|+.|.. .+..+++++++|.++ .+|+.+..++.|+.
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            44566788888654  123344566678888899999998 56766654 458899999999999 89988999999999


Q ss_pred             EEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhh
Q 043006          149 LSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI  188 (205)
Q Consensus       149 l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~  188 (205)
                      ++++.|++. ..|+.+..+.++..|+..+|.+. ++|-.+
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl  142 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL  142 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence            999999999 66888888999999999999887 777653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.40  E-value=5.1e-08  Score=81.24  Aligned_cols=124  Identities=29%  Similarity=0.408  Sum_probs=72.8

Q ss_pred             EEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 043006           74 VTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN  153 (205)
Q Consensus        74 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~  153 (205)
                      +..+++..|.+.. +-..+..++.++.+++.+|.+.+ +...+..+.+|++|++++|.|+.. . .+..++.|+.|++.+
T Consensus        74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i-~-~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL-E-GLSTLTLLKELNLSG  149 (414)
T ss_pred             HHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc-c-chhhccchhhheecc
Confidence            3344455555542 22335666677777777777763 333255677777777777777632 2 244555577777777


Q ss_pred             ccCCCCCchhccCCCCCCeeecccCcCcccCChh-hcCCCCCCEEEccCCCC
Q 043006          154 NSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG-IRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       154 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~ls~N~l  204 (205)
                      |.++..  ..+..++.|+.+++++|.+. .+... ...+.+++.+++.+|.+
T Consensus       150 N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  150 NLISDI--SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             Ccchhc--cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCch
Confidence            777622  23444667777777777776 33332 35566666666666654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.39  E-value=2.9e-07  Score=82.77  Aligned_cols=126  Identities=25%  Similarity=0.251  Sum_probs=95.5

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCc--cccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNN--FHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~--~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      .++...+-++.+. .++.... .+.|+.|-+..|.  +....+..|..++.|+.||+++|.=-+.+|..++.+-+|++|+
T Consensus       524 ~~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             heeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            4555555556554 2222222 2368888888886  4422333477899999999998876668999999999999999


Q ss_pred             cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccC
Q 043006          151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGY  201 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~  201 (205)
                      +++..+. .+|..+..++.|.+|++..+.-...+|.....+.+|++|.+..
T Consensus       602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            9999999 8899999999999999998876656677677799999988754

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.39  E-value=1.6e-08  Score=70.13  Aligned_cols=112  Identities=22%  Similarity=0.276  Sum_probs=86.7

Q ss_pred             CCcEEEEEcCCCCccccCCccccC-CCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEE
Q 043006           71 HQRVTALNHLDMGLGGTIPSHLGN-LLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL  149 (205)
Q Consensus        71 ~~~l~~L~l~~~~l~~~~p~~l~~-l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l  149 (205)
                      ..+++.+++++|.+. .+|+.|.. ++.++.+++++|.++ .+|..+..++.|+.++++.|.+. ..|..+..+.++..|
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            367889999999998 56655544 558999999999998 78999999999999999999998 889888889999999


Q ss_pred             EcccccCCCCCchhccCCCCCCeeecccCcCcccCCh
Q 043006          150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS  186 (205)
Q Consensus       150 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~  186 (205)
                      +..+|.+- .+|-.+.--...-..++.++.+.+.-+.
T Consensus       129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence            99999887 6664433222223345566666655443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=9.3e-08  Score=77.72  Aligned_cols=131  Identities=25%  Similarity=0.246  Sum_probs=86.6

Q ss_pred             CcEEEEEcCCCCccc-cCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCC--ccccCCCCCCE
Q 043006           72 QRVTALNHLDMGLGG-TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP--TWIGVLSKLRI  148 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~  148 (205)
                      .+++.|.+++|+++- .+...+..++.|+.|++..|.....-.....-+..|+.|++++|.+- ..+  ...+.++.|..
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence            455666666666552 23334455667777777777422222223344678899999999886 445  45678899999


Q ss_pred             EEcccccCCCC-Cchh-----ccCCCCCCeeecccCcCcccCCh--hhcCCCCCCEEEccCCCC
Q 043006          149 LSLCNNSLTGL-IPNS-----LFNLSKLEMLDAMFNVIDGSIPS--GIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       149 l~l~~n~l~~~-~p~~-----~~~l~~L~~L~ls~n~l~~~~p~--~~~~l~~L~~L~ls~N~l  204 (205)
                      |+++.+.+... +|+.     ...+++|++|++..|++. .++.  .+..+.+|+.|.+..|.+
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccc
Confidence            99999988742 2322     346789999999999996 5553  355666777777777765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.33  E-value=5.8e-07  Score=50.38  Aligned_cols=37  Identities=24%  Similarity=0.495  Sum_probs=26.8

Q ss_pred             CCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCC
Q 043006          120 RRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLT  157 (205)
Q Consensus       120 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~  157 (205)
                      ++|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            36777888888887 66766778888888888888777

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.24  E-value=2.8e-08  Score=85.38  Aligned_cols=102  Identities=28%  Similarity=0.422  Sum_probs=78.2

Q ss_pred             CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecc
Q 043006           97 FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAM  176 (205)
Q Consensus        97 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls  176 (205)
                      .|.+.+++.|.+. .+..++.-++.++.|++++|+++.. . .+..++.|++||++.|.+. .+|..-..-..|..|.+.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence            4556677777776 5566666778899999999999833 3 7888999999999999999 556432222349999999


Q ss_pred             cCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          177 FNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       177 ~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +|.++ ++ ..+.++++|+.||+++|-|
T Consensus       241 nN~l~-tL-~gie~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  241 NNALT-TL-RGIENLKSLYGLDLSYNLL  266 (1096)
T ss_pred             ccHHH-hh-hhHHhhhhhhccchhHhhh
Confidence            99997 43 3478999999999999965

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.22  E-value=3.4e-07  Score=76.35  Aligned_cols=107  Identities=29%  Similarity=0.392  Sum_probs=86.6

Q ss_pred             cCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCe
Q 043006           93 GNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEM  172 (205)
Q Consensus        93 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~  172 (205)
                      ..+..++.+.++.|.+. .+-..+..+++|+.+++.+|.+. .+...+..+++|+++++++|.++...  .+..++.|+.
T Consensus        69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhh
Confidence            34567778889999887 34445778899999999999998 55554778999999999999999553  3667778999


Q ss_pred             eecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          173 LDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       173 L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      |++++|.++ .+.. +..+.+|+.+++++|.++
T Consensus       145 L~l~~N~i~-~~~~-~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  145 LNLSGNLIS-DISG-LESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             heeccCcch-hccC-CccchhhhcccCCcchhh
Confidence            999999998 5443 566899999999999863

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.19  E-value=5.8e-07  Score=71.23  Aligned_cols=133  Identities=17%  Similarity=0.159  Sum_probs=74.2

Q ss_pred             CcEEEEEcCCCCccccCCc----cccCCCCCCEEEccCCccccccc-------------cccCCCCCCcEEEcccCcCCC
Q 043006           72 QRVTALNHLDMGLGGTIPS----HLGNLLFLMSLDLTLNNFHGHLA-------------HELGQLRRLRFISFTFNKLSG  134 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~----~l~~l~~L~~L~l~~n~~~~~~p-------------~~~~~l~~L~~L~l~~n~l~~  134 (205)
                      ++++.++|++|.+...-++    -+...+.|++|.+.+|.+...-.             .....-+.|+.+...+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            4788888888877644332    34446677777777777652111             112233455555555555431


Q ss_pred             C--------------------------------CCccccCCCCCCEEEcccccCCCC----CchhccCCCCCCeeecccC
Q 043006          135 S--------------------------------IPTWIGVLSKLRILSLCNNSLTGL----IPNSLFNLSKLEMLDAMFN  178 (205)
Q Consensus       135 ~--------------------------------~p~~~~~l~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n  178 (205)
                      .                                +...+..+++|+.||+..|-|+..    +...+..+++|+.+++++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            1                                112344566677777777766531    2334555666777777777


Q ss_pred             cCcccCCh----hh-cCCCCCCEEEccCCCC
Q 043006          179 VIDGSIPS----GI-RNLSNLFNLNLGYNNL  204 (205)
Q Consensus       179 ~l~~~~p~----~~-~~l~~L~~L~ls~N~l  204 (205)
                      .+...-..    .+ ...++|+.+.+.+|.|
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcchh
Confidence            66532221    22 2356677777777765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.99  E-value=1.2e-05  Score=59.54  Aligned_cols=102  Identities=23%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCC--ccccCCCCCCEEE
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP--TWIGVLSKLRILS  150 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~l~  150 (205)
                      ....+|+++|.+. .+ ..|..+++|.+|.+.+|.|+..-|.--.-+++|+.|.+.+|.+. .+.  +.+..+|.|++|.
T Consensus        43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence            4567788888775 22 23666778888888888888443432233567888888888876 332  3466778888888


Q ss_pred             cccccCCCCC---chhccCCCCCCeeeccc
Q 043006          151 LCNNSLTGLI---PNSLFNLSKLEMLDAMF  177 (205)
Q Consensus       151 l~~n~l~~~~---p~~~~~l~~L~~L~ls~  177 (205)
                      +-+|+.+..-   --.+..+|+|+.||++.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            8888777321   12355678888888765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.95  E-value=1.8e-05  Score=58.52  Aligned_cols=102  Identities=27%  Similarity=0.324  Sum_probs=78.1

Q ss_pred             CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCC-chhccCCCCCCeeec
Q 043006           97 FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLI-PNSLFNLSKLEMLDA  175 (205)
Q Consensus        97 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~-p~~~~~l~~L~~L~l  175 (205)
                      ....+||++|.+. .++ .|..++.|.+|.+.+|.|+...|.--..+++|+.|.+.+|++...- -+.+..+|.|++|.+
T Consensus        43 ~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            5678999999986 333 4778999999999999999444443445688999999999988321 134667899999999


Q ss_pred             ccCcCcccCCh----hhcCCCCCCEEEccC
Q 043006          176 MFNVIDGSIPS----GIRNLSNLFNLNLGY  201 (205)
Q Consensus       176 s~n~l~~~~p~----~~~~l~~L~~L~ls~  201 (205)
                      -+|.+. ..+.    .+..+++|+.||.+.
T Consensus       121 l~Npv~-~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVE-HKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchh-cccCceeEEEEecCcceEeehhh
Confidence            999887 3333    357889999999753

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.86  E-value=4e-06  Score=66.60  Aligned_cols=133  Identities=19%  Similarity=0.174  Sum_probs=97.3

Q ss_pred             CcEEEEEcCCCCcccc----CCccccCCCCCCEEEccCCccccc----cccccCCCCCCcEEEcccCcCCCC----CCcc
Q 043006           72 QRVTALNHLDMGLGGT----IPSHLGNLLFLMSLDLTLNNFHGH----LAHELGQLRRLRFISFTFNKLSGS----IPTW  139 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~  139 (205)
                      ..++++..+.|++...    +...+...+.|+.+.++.|.|...    +-..+..+++|+.||+.+|.|+..    +...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            6788888888876521    333455567888899988887621    223467789999999999999733    2355


Q ss_pred             ccCCCCCCEEEcccccCCCCCchhc-----cCCCCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCCC
Q 043006          140 IGVLSKLRILSLCNNSLTGLIPNSL-----FNLSKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       140 ~~~l~~L~~l~l~~n~l~~~~p~~~-----~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +..+++|+.++++.|.+...-...+     ...|+|+++.+.+|.++..    +-..+...+.|+.|++++|.+
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            6778899999999999885433222     2468999999999999732    223456688899999999986

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.75  E-value=0.00013  Score=60.12  Aligned_cols=13  Identities=15%  Similarity=-0.181  Sum_probs=7.3

Q ss_pred             CCCeeecccCcCc
Q 043006          169 KLEMLDAMFNVID  181 (205)
Q Consensus       169 ~L~~L~ls~n~l~  181 (205)
                      +|++|++++|...
T Consensus       157 SLk~L~Is~c~~i  169 (426)
T PRK15386        157 SLKTLSLTGCSNI  169 (426)
T ss_pred             cccEEEecCCCcc
Confidence            4566666655543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.64  E-value=4.9e-05  Score=67.10  Aligned_cols=107  Identities=23%  Similarity=0.230  Sum_probs=61.7

Q ss_pred             CCCCCEEEccCCccccc-cccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCC-CCchhccCCCCCCe
Q 043006           95 LLFLMSLDLTLNNFHGH-LAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTG-LIPNSLFNLSKLEM  172 (205)
Q Consensus        95 l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~  172 (205)
                      ||.|+.|.+.+-.+... ...-..++++|..||+++..++ .+ .+++++++|+.|.+.+=.+.. ..-..+..+++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            56677777766555321 1122345667777777777766 33 556677777777766544442 11134566777777


Q ss_pred             eecccCcCcccCC---h----hhcCCCCCCEEEccCCCC
Q 043006          173 LDAMFNVIDGSIP---S----GIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       173 L~ls~n~l~~~~p---~----~~~~l~~L~~L~ls~N~l  204 (205)
                      ||+|..... ..+   .    .-..+++|+.||.|++.+
T Consensus       225 LDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  225 LDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDI  262 (699)
T ss_pred             eeccccccc-cchHHHHHHHHhcccCccccEEecCCcch
Confidence            777765543 222   1    113467777777777654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.59  E-value=4.7e-05  Score=58.35  Aligned_cols=64  Identities=22%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             cCCCCCCcEEEcccC--cCCCCCCccccCCCCCCEEEcccccCCCCCchh---ccCCCCCCeeecccCcCc
Q 043006          116 LGQLRRLRFISFTFN--KLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNS---LFNLSKLEMLDAMFNVID  181 (205)
Q Consensus       116 ~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~---~~~l~~L~~L~ls~n~l~  181 (205)
                      +..+++|+.|.++.|  ++.+.++...-.+++|+++++++|++..  +..   +..+.+|..|++.+|..+
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence            344555566666655  3343333333344566666666665551  111   223344555555555544

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=1.3e-05  Score=62.78  Aligned_cols=59  Identities=19%  Similarity=0.133  Sum_probs=43.2

Q ss_pred             CCCCCCEEEcccc-cCCCCCchhccCCCCCCeeecccCcCcccCChh---hcCCCCCCEEEccCC
Q 043006          142 VLSKLRILSLCNN-SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG---IRNLSNLFNLNLGYN  202 (205)
Q Consensus       142 ~l~~L~~l~l~~n-~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~---~~~l~~L~~L~ls~N  202 (205)
                      .+++|.+|||+.| .++...-..|..++-|++|.++.|+.  .+|..   +...++|.+||+.+.
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            4678888888877 45544455677888889999988875  36664   466778888887653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=5.6e-05  Score=59.32  Aligned_cols=37  Identities=27%  Similarity=0.367  Sum_probs=19.9

Q ss_pred             CCCCCeeecccCcCcccCC--hhhcCCCCCCEEEccCCCC
Q 043006          167 LSKLEMLDAMFNVIDGSIP--SGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       167 l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l  204 (205)
                      +|.+..|+++.|++. ...  ..+.++++|..|.+++|++
T Consensus       223 ~p~~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  223 FPSLSCLNLGANNID-SWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             CCcchhhhhcccccc-cHHHHHHHcCCchhheeeccCCcc
Confidence            344445555555553 222  2355666666666666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.34  E-value=0.00042  Score=57.27  Aligned_cols=95  Identities=18%  Similarity=0.206  Sum_probs=54.0

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCC-ccccccccccCCCCCCcEEEcccCcC--CCCCCccccCC-----
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLN-NFHGHLAHELGQLRRLRFISFTFNKL--SGSIPTWIGVL-----  143 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~L~l~~n~l--~~~~p~~~~~l-----  143 (205)
                      ..++.|.++++.--..+|..+.  ..|++|++++| .+. .+|.      +|+.|++..+..  -+.+|.++..+     
T Consensus        72 ~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPssLk~L~I~~~  142 (426)
T PRK15386         72 NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPNGLTSLSINSY  142 (426)
T ss_pred             CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcchHhheecccc
Confidence            3567777766443234444332  36777777776 343 4443      345555554432  12455443322     


Q ss_pred             -------------CCCCEEEcccccCCCCCchhccCCCCCCeeecccC
Q 043006          144 -------------SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN  178 (205)
Q Consensus       144 -------------~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n  178 (205)
                                   ++|++|++++|... .+|..+.  .+|+.|+++.+
T Consensus       143 n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        143 NPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             ccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence                         37888999888765 3444333  58899998876

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.34  E-value=6.7e-05  Score=66.22  Aligned_cols=106  Identities=17%  Similarity=0.257  Sum_probs=76.0

Q ss_pred             CCCCEEEccCCccc-cccccccC-CCCCCcEEEcccCcCCCC-CCccccCCCCCCEEEcccccCCCCCchhccCCCCCCe
Q 043006           96 LFLMSLDLTLNNFH-GHLAHELG-QLRRLRFISFTFNKLSGS-IPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEM  172 (205)
Q Consensus        96 ~~L~~L~l~~n~~~-~~~p~~~~-~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~  172 (205)
                      .+|++|++++...- ...|..++ -+|+|+.|.+.+-.+... .-.-..++++|..||+++.+++..  ..+.++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            46888999886532 12233333 468999999988666422 224456889999999999999844  67889999999


Q ss_pred             eecccCcCcc-cCChhhcCCCCCCEEEccCCC
Q 043006          173 LDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNN  203 (205)
Q Consensus       173 L~ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~  203 (205)
                      |.+.+=.+.. ..-..+.++++|+.||+|...
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence            9888766651 111247789999999999753

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.33  E-value=0.00015  Score=55.62  Aligned_cols=82  Identities=26%  Similarity=0.262  Sum_probs=58.5

Q ss_pred             CCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccc--cCCCCCchhccCCCCCCeeecccCcCcccCChh---hcCCCC
Q 043006          119 LRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN--SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG---IRNLSN  193 (205)
Q Consensus       119 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n--~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~---~~~l~~  193 (205)
                      ...|+.+.+.+..++ .+ ..+-.+++|+.|.++.|  +.++.++-....+|+|+++++++|++.  ++..   +..+.+
T Consensus        42 ~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~n  117 (260)
T KOG2739|consen   42 FVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELEN  117 (260)
T ss_pred             ccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcc
Confidence            345555555555544 11 23557789999999999  777666655666799999999999997  3443   456778


Q ss_pred             CCEEEccCCCC
Q 043006          194 LFNLNLGYNNL  204 (205)
Q Consensus       194 L~~L~ls~N~l  204 (205)
                      |..|++.+|..
T Consensus       118 L~~Ldl~n~~~  128 (260)
T KOG2739|consen  118 LKSLDLFNCSV  128 (260)
T ss_pred             hhhhhcccCCc
Confidence            88899988754

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.32  E-value=0.00021  Score=55.51  Aligned_cols=38  Identities=21%  Similarity=0.347  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCccccCCcc----ccCCCCCCEEEccCCccc
Q 043006           72 QRVTALNHLDMGLGGTIPSH----LGNLLFLMSLDLTLNNFH  109 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~----l~~l~~L~~L~l~~n~~~  109 (205)
                      ++++.+++++|.+....|+.    ++.-+.|++|.+++|.+.
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            45666666666665444432    334455666666666553

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=5.8e-05  Score=59.26  Aligned_cols=86  Identities=29%  Similarity=0.266  Sum_probs=55.7

Q ss_pred             CCCCCEEEccCCccccc--cccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCC-CchhccCCCCCC
Q 043006           95 LLFLMSLDLTLNNFHGH--LAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGL-IPNSLFNLSKLE  171 (205)
Q Consensus        95 l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~-~p~~~~~l~~L~  171 (205)
                      .+.++.+|+.+|.++..  +..-+..++.|++|+++.|.+...+-..-....+|+++.+.+..+.-. ....+..+|.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            35678888888888742  223345678888888888887633222113556788888877766532 223445677788


Q ss_pred             eeecccCcC
Q 043006          172 MLDAMFNVI  180 (205)
Q Consensus       172 ~L~ls~n~l  180 (205)
                      +|.+|.|++
T Consensus       150 elHmS~N~~  158 (418)
T KOG2982|consen  150 ELHMSDNSL  158 (418)
T ss_pred             hhhhccchh
Confidence            888887744

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.85  E-value=0.0014  Score=51.15  Aligned_cols=112  Identities=22%  Similarity=0.186  Sum_probs=76.6

Q ss_pred             ccccCCCCCCEEEccCCccccccccc----cCCCCCCcEEEcccCcCCCCCC-c-------------cccCCCCCCEEEc
Q 043006           90 SHLGNLLFLMSLDLTLNNFHGHLAHE----LGQLRRLRFISFTFNKLSGSIP-T-------------WIGVLSKLRILSL  151 (205)
Q Consensus        90 ~~l~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~l~~~~p-~-------------~~~~l~~L~~l~l  151 (205)
                      +.+.+.++|+..++|.|.+....|..    ++..+.|.+|.+++|.+. .+. .             -...-|.|+++..
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            34667889999999999988665543    456688999999999875 222 1             1224478999999


Q ss_pred             ccccCCCCCch----hccCCCCCCeeecccCcCcccCCh--------hhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPN----SLFNLSKLEMLDAMFNVIDGSIPS--------GIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~----~~~~l~~L~~L~ls~n~l~~~~p~--------~~~~l~~L~~L~ls~N~l~  205 (205)
                      ..|++-.....    .+..-..|+.+.+..|.|.   |.        .+..+.+|+.||++.|-++
T Consensus       165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             ccchhccCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence            99987632111    1223356778888888775   32        2356778888888888654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.85  E-value=4.1e-05  Score=59.54  Aligned_cols=97  Identities=28%  Similarity=0.322  Sum_probs=68.3

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCc--cccCCCCCCEEE
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPT--WIGVLSKLRILS  150 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~l~  150 (205)
                      .+..|++=++++...  ....+|+.|++|.|+.|.|+..-|  +..++.|++|++..|.|. .+.+  -+.++++|+.|.
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence            345556656665532  123567788999999999884333  678899999999999887 5543  367889999999


Q ss_pred             cccccCCCCCchh-----ccCCCCCCeee
Q 043006          151 LCNNSLTGLIPNS-----LFNLSKLEMLD  174 (205)
Q Consensus       151 l~~n~l~~~~p~~-----~~~l~~L~~L~  174 (205)
                      |..|+-.|.-+..     +..+|+|+.||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            9999877654432     44577777775

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.83  E-value=0.0063  Score=41.81  Aligned_cols=116  Identities=16%  Similarity=0.180  Sum_probs=56.5

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.+.+.. .+...-...+...+.|+.+.+..+ +...-...|..+.+++.+.+.. .+.......+..+++++.+++
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence            4677777764 455444556777778888888775 5533344577777888888865 443233455677888888888


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCC-hhhcCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP-SGIRNLSNL  194 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L  194 (205)
                      ..+ +...-...+... +++.+.+.. .+. .++ ..|.++++|
T Consensus        89 ~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   89 PSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             Ccc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            765 442223445555 788887765 333 233 345666555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=3.1e-05  Score=60.78  Aligned_cols=56  Identities=13%  Similarity=0.118  Sum_probs=23.8

Q ss_pred             EEEEEcCCCCccc-cCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEccc
Q 043006           74 VTALNHLDMGLGG-TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTF  129 (205)
Q Consensus        74 l~~L~l~~~~l~~-~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  129 (205)
                      ++++|++...++- .+..-+....+|+.|.+.++.+...+-..+..-.+|+.+++++
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm  243 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM  243 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence            4445555444431 1112223333444445555544443333444444455555444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.67  E-value=0.00055  Score=32.09  Aligned_cols=19  Identities=47%  Similarity=0.525  Sum_probs=10.5

Q ss_pred             CCeeecccCcCcccCChhhc
Q 043006          170 LEMLDAMFNVIDGSIPSGIR  189 (205)
Q Consensus       170 L~~L~ls~n~l~~~~p~~~~  189 (205)
                      |++||+++|+++ .+|..++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455566666555 5555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.44  E-value=0.014  Score=40.06  Aligned_cols=106  Identities=23%  Similarity=0.205  Sum_probs=61.1

Q ss_pred             cccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCC
Q 043006           91 HLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKL  170 (205)
Q Consensus        91 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L  170 (205)
                      .+.+..+|+.+.+.. .+...-...|..+++|+.+.+..+ +.......+.++++++.+.+.+ .+...-...|..++++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            456667899999885 455344556888889999999875 6633446688888999999976 4442333456678999


Q ss_pred             CeeecccCcCcccCC-hhhcCCCCCCEEEccCC
Q 043006          171 EMLDAMFNVIDGSIP-SGIRNLSNLFNLNLGYN  202 (205)
Q Consensus       171 ~~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls~N  202 (205)
                      +.+++..+ +. .++ ..+.+. +++.+.+..+
T Consensus        84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~~  113 (129)
T PF13306_consen   84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIPSN  113 (129)
T ss_dssp             CEEEETTT--B-EEHTTTTTT--T--EEE-TTB
T ss_pred             cccccCcc-cc-EEchhhhcCC-CceEEEECCC
Confidence            99999776 44 333 346666 8888887653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.41  E-value=0.0021  Score=30.07  Aligned_cols=18  Identities=33%  Similarity=0.447  Sum_probs=9.5

Q ss_pred             CCEEEccCCcccccccccc
Q 043006           98 LMSLDLTLNNFHGHLAHEL  116 (205)
Q Consensus        98 L~~L~l~~n~~~~~~p~~~  116 (205)
                      |++|++++|+++ .+|..|
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            455555555555 455443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.23  E-value=9e-05  Score=56.26  Aligned_cols=84  Identities=20%  Similarity=0.123  Sum_probs=73.3

Q ss_pred             CCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           71 HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        71 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      ..+++.||++.|.+. .+...++.++++..|+++.|.+. .+|.++.....++.+++..|..+ ..|.+++..+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            378999999999876 44556777889999999999987 78999999999999999999988 8899999999999999


Q ss_pred             cccccCC
Q 043006          151 LCNNSLT  157 (205)
Q Consensus       151 l~~n~l~  157 (205)
                      +-+|.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9998876

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.84  E-value=0.00036  Score=54.39  Aligned_cols=99  Identities=23%  Similarity=0.212  Sum_probs=74.7

Q ss_pred             CCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCc--hhccCCCCCCe
Q 043006           95 LLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIP--NSLFNLSKLEM  172 (205)
Q Consensus        95 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p--~~~~~l~~L~~  172 (205)
                      +...+.|++=++.++. +. -...|+.|+.|.++-|+|+..  ..+..+++|++|+|..|.+.. +-  ..+.++|+|+.
T Consensus        18 l~~vkKLNcwg~~L~D-Is-ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDD-IS-ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccH-HH-HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhh
Confidence            4456777877777762 22 135789999999999999833  347789999999999999984 33  34568999999


Q ss_pred             eecccCcCcccCChh-----hcCCCCCCEEE
Q 043006          173 LDAMFNVIDGSIPSG-----IRNLSNLFNLN  198 (205)
Q Consensus       173 L~ls~n~l~~~~p~~-----~~~l~~L~~L~  198 (205)
                      |.+..|.-.|.-+..     +.-+++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999999888766543     45677877776

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.35  E-value=0.0094  Score=25.94  Aligned_cols=13  Identities=31%  Similarity=0.314  Sum_probs=4.6

Q ss_pred             CCCeeecccCcCc
Q 043006          169 KLEMLDAMFNVID  181 (205)
Q Consensus       169 ~L~~L~ls~n~l~  181 (205)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.92  E-value=0.00034  Score=53.20  Aligned_cols=89  Identities=15%  Similarity=0.103  Sum_probs=75.1

Q ss_pred             ccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCC
Q 043006           90 SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSK  169 (205)
Q Consensus        90 ~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~  169 (205)
                      .++..+.+.+.||++.|++- .+...|+.++.+..++++.|.+. .+|..++....+..+++..|.++ ..|.+++..+.
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~  112 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH  112 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence            35667778899999999876 56667788888999999999988 78888888888888999888888 77888999999


Q ss_pred             CCeeecccCcCc
Q 043006          170 LEMLDAMFNVID  181 (205)
Q Consensus       170 L~~L~ls~n~l~  181 (205)
                      +++++.-.|.+.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            999999888765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.82  E-value=0.12  Score=24.87  Aligned_cols=18  Identities=33%  Similarity=0.468  Sum_probs=10.2

Q ss_pred             CCCCeeecccCcCcccCCh
Q 043006          168 SKLEMLDAMFNVIDGSIPS  186 (205)
Q Consensus       168 ~~L~~L~ls~n~l~~~~p~  186 (205)
                      ++|+.|++++|.+. .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45566666666665 4454

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.82  E-value=0.12  Score=24.87  Aligned_cols=18  Identities=33%  Similarity=0.468  Sum_probs=10.2

Q ss_pred             CCCCeeecccCcCcccCCh
Q 043006          168 SKLEMLDAMFNVIDGSIPS  186 (205)
Q Consensus       168 ~~L~~L~ls~n~l~~~~p~  186 (205)
                      ++|+.|++++|.+. .+|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPP   19 (26)
T ss_pred             CCCCEEECCCCcCC-cCCH
Confidence            45566666666665 4454

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.63  E-value=0.041  Score=41.11  Aligned_cols=34  Identities=24%  Similarity=0.194  Sum_probs=15.0

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCC
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLN  106 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n  106 (205)
                      .|+.++-++..+...--..+..++.++.|.+.++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            3555555555544332233444444444444443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.14  E-value=0.041  Score=26.05  Aligned_cols=13  Identities=46%  Similarity=0.440  Sum_probs=5.3

Q ss_pred             CCCeeecccCcCc
Q 043006          169 KLEMLDAMFNVID  181 (205)
Q Consensus       169 ~L~~L~ls~n~l~  181 (205)
                      +|+.|++++|.++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4445555555444

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.39  E-value=0.46  Score=23.09  Aligned_cols=13  Identities=38%  Similarity=0.580  Sum_probs=7.0

Q ss_pred             CCCCEEEccCCCC
Q 043006          192 SNLFNLNLGYNNL  204 (205)
Q Consensus       192 ~~L~~L~ls~N~l  204 (205)
                      .+|+.|++++|.|
T Consensus         2 ~~L~~L~L~~NkI   14 (26)
T smart00365        2 TNLEELDLSQNKI   14 (26)
T ss_pred             CccCEEECCCCcc
Confidence            3455555555554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.92  E-value=0.43  Score=23.19  Aligned_cols=18  Identities=28%  Similarity=0.435  Sum_probs=12.8

Q ss_pred             CCCCeeecccCcCcccCCh
Q 043006          168 SKLEMLDAMFNVIDGSIPS  186 (205)
Q Consensus       168 ~~L~~L~ls~n~l~~~~p~  186 (205)
                      ++|+.|++++|+++ .+|+
T Consensus         2 ~~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             cccceeecCCCccc-cCcc
Confidence            35777778888777 6665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=86.91  E-value=0.29  Score=41.23  Aligned_cols=37  Identities=24%  Similarity=0.192  Sum_probs=15.3

Q ss_pred             CCCCCEEEccccc-CCCCCchhcc-CCCCCCeeecccCc
Q 043006          143 LSKLRILSLCNNS-LTGLIPNSLF-NLSKLEMLDAMFNV  179 (205)
Q Consensus       143 l~~L~~l~l~~n~-l~~~~p~~~~-~l~~L~~L~ls~n~  179 (205)
                      +.+|+.++++.+. ++...-..+. .+++|+.|.+.++.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS  280 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence            3445555555544 3322111111 24455555544444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=86.08  E-value=0.0056  Score=52.05  Aligned_cols=132  Identities=24%  Similarity=0.264  Sum_probs=77.1

Q ss_pred             cEEEEEcCCCCccc----cCCccccCCCCCCEEEccCCcccc----cccccc----CCCCCCcEEEcccCcCCCCCC---
Q 043006           73 RVTALNHLDMGLGG----TIPSHLGNLLFLMSLDLTLNNFHG----HLAHEL----GQLRRLRFISFTFNKLSGSIP---  137 (205)
Q Consensus        73 ~l~~L~l~~~~l~~----~~p~~l~~l~~L~~L~l~~n~~~~----~~p~~~----~~l~~L~~L~l~~n~l~~~~p---  137 (205)
                      .++.+++..+.++.    .+...+.....++.++++.|.+..    .++..+    ....++++|.+++|.++...-   
T Consensus       145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l  224 (478)
T KOG4308|consen  145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL  224 (478)
T ss_pred             HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence            44556666666553    244455556677777777777631    112222    245677778887777662111   


Q ss_pred             -ccccCCCC-CCEEEcccccCCCC----CchhccCC-CCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCCC
Q 043006          138 -TWIGVLSK-LRILSLCNNSLTGL----IPNSLFNL-SKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       138 -~~~~~l~~-L~~l~l~~n~l~~~----~p~~~~~l-~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l  204 (205)
                       ..+...+. +..+++..|.+.+.    +...+..+ ..++.++++.|.++..    ++..+..++.++++.++.|.+
T Consensus       225 ~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  225 DEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence             12233344 56678888877643    22233444 5678888888888743    233445666778888888765

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.53  E-value=0.77  Score=22.57  Aligned_cols=12  Identities=42%  Similarity=0.567  Sum_probs=6.9

Q ss_pred             CCCEEEccCCCC
Q 043006          193 NLFNLNLGYNNL  204 (205)
Q Consensus       193 ~L~~L~ls~N~l  204 (205)
                      +|++|||++|.|
T Consensus         3 ~L~~LdL~~N~i   14 (28)
T smart00368        3 SLRELDLSNNKL   14 (28)
T ss_pred             ccCEEECCCCCC
Confidence            455566666654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.53  E-value=0.42  Score=35.85  Aligned_cols=81  Identities=19%  Similarity=0.140  Sum_probs=57.7

Q ss_pred             CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCC-Ccccc-CCCCCCEEEcccc-cCCCCCchhccCCCCCCee
Q 043006           97 FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSI-PTWIG-VLSKLRILSLCNN-SLTGLIPNSLFNLSKLEML  173 (205)
Q Consensus        97 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~-~l~~L~~l~l~~n-~l~~~~p~~~~~l~~L~~L  173 (205)
                      .++.+|-++..|...--..+..++.++.|.+.++.-.+.. -+-++ -.++|+.|++++| ++|..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            5788898988887655566778888888888877533211 11122 3479999999988 6886555667788888888


Q ss_pred             eccc
Q 043006          174 DAMF  177 (205)
Q Consensus       174 ~ls~  177 (205)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=80.49  E-value=0.41  Score=40.31  Aligned_cols=89  Identities=20%  Similarity=0.010  Sum_probs=44.1

Q ss_pred             ccCCCCCCEEEccCC-ccccccc----cccCCCCCCcEEEcccCc-CCCCCCcccc-CCCCCCEEEccccc-CCCC-Cch
Q 043006           92 LGNLLFLMSLDLTLN-NFHGHLA----HELGQLRRLRFISFTFNK-LSGSIPTWIG-VLSKLRILSLCNNS-LTGL-IPN  162 (205)
Q Consensus        92 l~~l~~L~~L~l~~n-~~~~~~p----~~~~~l~~L~~L~l~~n~-l~~~~p~~~~-~l~~L~~l~l~~n~-l~~~-~p~  162 (205)
                      ....+.|+.|+++++ ......+    .....+++|+.++++.+. ++...-..+. .+++|++|.+.++. +++. +-.
T Consensus       210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~  289 (482)
T KOG1947|consen  210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS  289 (482)
T ss_pred             HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence            444556777776652 1110111    122334666777776665 4422222222 25677777765554 4422 112


Q ss_pred             hccCCCCCCeeecccCcC
Q 043006          163 SLFNLSKLEMLDAMFNVI  180 (205)
Q Consensus       163 ~~~~l~~L~~L~ls~n~l  180 (205)
                      ....++.|+.|+++++..
T Consensus       290 i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  290 IAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHHhcCcccEEeeecCcc
Confidence            223556677777776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		9e-12
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-07

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 62/129 (48%), Gaps = 24/129 (18%)
Query: 84  LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLR-------------------- 123
           L GTIPS LG+L  L  L L LN   G +  EL  ++ L                     
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 124 ----FISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNV 179
               +IS + N+L+G IP WIG L  L IL L NNS +G IP  L +   L  LD   N+
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 180 IDGSIPSGI 188
            +G+IP+ +
Sbjct: 547 FNGTIPAAM 555

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 62/129 (48%), Gaps = 24/129 (18%)
Query: 84  LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLR-------------------- 123
           L GTIPS LG+L  L  L L LN   G +  EL  ++ L                     
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 124 ----FISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNV 179
               +IS + N+L+G IP WIG L  L IL L NNS +G IP  L +   L  LD   N+
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 180 IDGSIPSGI 188
            +G+IP+ +
Sbjct: 550 FNGTIPAAM 558

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 36/188 (19%)
Query: 31  DQSALLAFKAHVVDYRSALANNWAMSSPICN--WIGISCGLPHQRVTALNHLDMG----- 83
           D+ ALL  K  + +      ++W  ++  CN  W+G+ C    Q    +N+LD+      
Sbjct: 7   DKQALLQIKKDLGN--PTTLSSWLPTTDCCNRTWLGVLCDTDTQ-TYRVNNLDLSGLNLP 63
Query: 84  -------------------------LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQ 118
                                    L G IP  +  L  L  L +T  N  G +   L Q
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 119 LRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKL-EMLDAMF 177
           ++ L  + F++N LSG++P  I  L  L  ++   N ++G IP+S  + SKL   +    
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 178 NVIDGSIP 185
           N + G IP
Sbjct: 184 NRLTGKIP 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-21
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-29
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-11
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  144 bits (366), Expect = 1e-42
 Identities = 54/183 (29%), Positives = 90/183 (49%), Gaps = 10/183 (5%)

Query: 30  TDQSALLAFKAHVVDYRSALANNWAMSSPICN--WIGISCGLPHQ--RVTALNHLDMGLG 85
            D+ ALL  K  + +  + L++ W  ++  CN  W+G+ C    Q  RV  L+   + L 
Sbjct: 6   QDKQALLQIKKDLGNP-TTLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63

Query: 86  GT--IPSHLGNLLFLMSLDLT-LNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV 142
               IPS L NL +L  L +  +NN  G +   + +L +L ++  T   +SG+IP ++  
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123

Query: 143 LSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFN-LNLGY 201
           +  L  L    N+L+G +P S+ +L  L  +    N I G+IP    + S LF  + +  
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 202 NNL 204
           N L
Sbjct: 184 NRL 186

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  105 bits (265), Expect = 8e-28
 Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLM-SLDLTLNNFHGHLAHELGQLRRLRFISFTFN 130
             L  +      + G IP   G+   L  S+ ++ N   G +      L  L F+  + N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207

Query: 131 KLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRN 190
            L G      G     + + L  NSL   +   +     L  LD   N I G++P G+  
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 191 LSNLFNLNLGYNNLQ 205
           L  L +LN+ +NNL 
Sbjct: 267 LKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 87.6 bits (218), Expect = 5e-21
 Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 84  LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
           L G IP    NL  L  +DL+ N   G  +   G  +  + I    N L+  +   +G+ 
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLS 243

Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNN 203
             L  L L NN + G +P  L  L  L  L+  FN + G IP G  NL          N 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 77  LNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLS 133
           L  +D+    L G      G+      + L  N+    L  ++G  + L  +    N++ 
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIY 257

Query: 134 GSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN 178
           G++P  +  L  L  L++  N+L G IP    NL + ++     N
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
             LN LD+    + GT+P  L  L FL SL+++ NN  G +  + G L+R    ++  NK
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

Query: 132 LSGSIP 137
                P
Sbjct: 303 CLCGSP 308

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  125 bits (317), Expect = 9e-34
 Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 14/187 (7%)

Query: 28  ITTDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGL--- 84
           +  +   L++FK  + D    L  +W+ +   C + G++C     +VT+++     L   
Sbjct: 10  LYREIHQLISFKDVLPD--KNLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVG 65

Query: 85  GGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPT--WIGV 142
              + S L +L  L SL L+ ++ +G +         L  +  + N LSG + T   +G 
Sbjct: 66  FSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGS 124

Query: 143 LSKLRILSLCNNSLTGLIPNSLF-NLSKLEMLDAMFNVIDGSIPSGIR---NLSNLFNLN 198
            S L+ L++ +N+L      S    L+ LE+LD   N I G+   G         L +L 
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 199 LGYNNLQ 205
           +  N + 
Sbjct: 185 ISGNKIS 191

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (285), Expect = 2e-29
 Identities = 46/133 (34%), Positives = 59/133 (44%), Gaps = 3/133 (2%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
             L  L +      G IP  L N   L+SL L+ N   G +   LG L +LR +    N 
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453

Query: 132 LSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNL 191
           L G IP  +  +  L  L L  N LTG IP+ L N + L  +    N + G IP  I  L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513

Query: 192 SNLFNLNLGYNNL 204
            NL  L L  N+ 
Sbjct: 514 ENLAILKLSNNSF 526

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  109 bits (275), Expect = 4e-28
 Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 3/133 (2%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
           + L  L +    L GTIPS LG+L  L  L L LN   G +  EL  ++ L  +   FN 
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477

Query: 132 LSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNL 191
           L+G IP+ +   + L  +SL NN LTG IP  +  L  L +L    N   G+IP+ + + 
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537

Query: 192 SNLFNLNLGYNNL 204
            +L  L+L  N  
Sbjct: 538 RSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (271), Expect = 1e-27
 Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 6/137 (4%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLF-LMSLDLTLNNFHGHLAHELGQ--LRRLRFISFT 128
             L  LD+      G +P  L NL   L++LDL+ NNF G +   L Q     L+ +   
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402

Query: 129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
            N  +G IP  +   S+L  L L  N L+G IP+SL +LSKL  L    N+++G IP  +
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462

Query: 189 RNLSNLFNLNLGYNNLQ 205
             +  L  L L +N+L 
Sbjct: 463 MYVKTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (270), Expect = 2e-27
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 69  LPHQRVTALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFI 125
           +   R   L  LD+        IP  LG+   L  LD++ N   G  +  +     L+ +
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252

Query: 126 SFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLF-NLSKLEMLDAMFNVIDGSI 184
           + + N+  G IP     L  L+ LSL  N  TG IP+ L      L  LD   N   G++
Sbjct: 253 NISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310

Query: 185 PSGIRNLSNLFNLNLGYNNLQ 205
           P    + S L +L L  NN  
Sbjct: 311 PPFFGSCSLLESLALSSNNFS 331

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (268), Expect = 3e-27
 Identities = 45/133 (33%), Positives = 62/133 (46%), Gaps = 3/133 (2%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
           + L  L +    L G IP  L  +  L +L L  N+  G +   L     L +IS + N+
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501

Query: 132 LSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNL 191
           L+G IP WIG L  L IL L NNS +G IP  L +   L  LD   N+ +G+IP+ +   
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561

Query: 192 SNLFNLNLGYNNL 204
           S     N      
Sbjct: 562 SGKIAANFIAGKR 574

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  104 bits (263), Expect = 2e-26
 Identities = 38/139 (27%), Positives = 63/139 (45%)

Query: 67  CGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS 126
                ++        +   G     L  L      ++T   + GH +        + F+ 
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS 186
            ++N LSG IP  IG +  L IL+L +N ++G IP+ + +L  L +LD   N +DG IP 
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698

Query: 187 GIRNLSNLFNLNLGYNNLQ 205
            +  L+ L  ++L  NNL 
Sbjct: 699 AMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  101 bits (255), Expect = 2e-25
 Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
           +AL HLD+    L G     +     L  L+++ N F G +      L+ L+++S   NK
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENK 280

Query: 132 LSGSIPTWI-GVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP-SGIR 189
            +G IP ++ G    L  L L  N   G +P    + S LE L    N   G +P   + 
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340

Query: 190 NLSNLFNLNLGYNNLQ 205
            +  L  L+L +N   
Sbjct: 341 KMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (251), Expect = 7e-25
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 9/135 (6%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
             L HL +    + G +   +   + L  LD++ NNF   +   LG    L+ +  + NK
Sbjct: 178 GELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNK 234

Query: 132 LSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIR-N 190
           LSG     I   ++L++L++ +N   G IP     L  L+ L    N   G IP  +   
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGA 292

Query: 191 LSNLFNLNLGYNNLQ 205
              L  L+L  N+  
Sbjct: 293 CDTLTGLDLSGNHFY 307

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 1e-23
 Identities = 38/134 (28%), Positives = 53/134 (39%), Gaps = 7/134 (5%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
             L  L +    L G IPS L N   L  + L+ N   G +   +G+L  L  +  + N 
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525

Query: 132 LSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNL 191
            SG+IP  +G    L  L L  N   G IP ++F  S         N I G     I+N 
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKND 581

Query: 192 SNLFNLNLGYNNLQ 205
                 +   N L+
Sbjct: 582 GMKKECHGAGNLLE 595

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 1e-23
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 8/136 (5%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHEL-GQLRRLRFISFTFN 130
           T L  L++      G IP     L  L  L L  N F G +   L G    L  +  + N
Sbjct: 247 TELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 131 KLSGSIPTWIGVLSKLRILSLCNNSLTGLIP-NSLFNLSKLEMLDAMFNVIDGSIPSGIR 189
              G++P + G  S L  L+L +N+ +G +P ++L  +  L++LD  FN   G +P  + 
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT 364

Query: 190 NLS-NLFNLNLGYNNL 204
           NLS +L  L+L  NN 
Sbjct: 365 NLSASLLTLDLSSNNF 380

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.4 bits (207), Expect = 5e-19
 Identities = 35/104 (33%), Positives = 52/104 (50%)

Query: 84  LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL 143
            GG       N   +M LD++ N   G++  E+G +  L  ++   N +SGSIP  +G L
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679

Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG 187
             L IL L +N L G IP ++  L+ L  +D   N + G IP  
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 4/133 (3%)

Query: 77  LNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLS 133
             +LD+    L         +   L  LDL+              L  L  +  T N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 134 GSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLS 192
                    LS L+ L     +L  L    + +L  L+ L+   N+I    +P    NL+
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 193 NLFNLNLGYNNLQ 205
           NL +L+L  N +Q
Sbjct: 150 NLEHLDLSSNKIQ 162

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 88  IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLR 147
           IP +L       +LDL+ N      ++       L+ +  +  ++          LS L 
Sbjct: 22  IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            L L  N +  L   +   LS L+ L A+   +       I +L  L  LN+ +N +Q
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.8 bits (192), Expect = 4e-17
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHE-LGQLRRLRFISFTFN 130
             L +LD+               L  L  L +  N+F  +   +   +LR L F+  +  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 131 KLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRN 190
           +L    PT    LS L++L++ +N+   L       L+ L++LD   N I  S    +++
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540

Query: 191 L-SNLFNLNLGYNNLQ 205
             S+L  LNL  N+  
Sbjct: 541 FPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 9e-16
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 5/136 (3%)

Query: 75  TALNHLDMG---LGGTIP-SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFN 130
             L HLD     L      S   +L  L+ LD++  +           L  L  +    N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455

Query: 131 KLSGSI-PTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIR 189
               +  P     L  L  L L    L  L P +  +LS L++L+   N          +
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 190 NLSNLFNLNLGYNNLQ 205
            L++L  L+   N++ 
Sbjct: 516 CLNSLQVLDYSLNHIM 531

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 5/142 (3%)

Query: 68  GLPHQRVTALNHLDM-GLGGTIPSHLGNLLFLMSLDLTLN--NFHGHLAHELGQLRRLRF 124
             P  ++ +L  L      G       +L  L  LDL+ N  +F G  +        L++
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 125 ISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLF-NLSKLEMLDAMFNVIDGS 183
           +  +FN +      ++G L +L  L   +++L  +   S+F +L  L  LD        +
Sbjct: 378 LDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 184 IPSGIRNLSNLFNLNLGYNNLQ 205
                  LS+L  L +  N+ Q
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQ 458

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 9/142 (6%)

Query: 72  QRVTALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFT 128
           Q ++ L+ L +    +          L  L  L     N        +G L+ L+ ++  
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 129 FNKL-SGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEM----LDAMFNVIDGS 183
            N + S  +P +   L+ L  L L +N +  +    L  L ++ +    LD   N ++  
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

Query: 184 IPSGIRNLSNLFNLNLGYNNLQ 205
            P   + +  L  L L  N   
Sbjct: 193 QPGAFKEI-RLHKLTLRNNFDS 213

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 4e-12
 Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 6/144 (4%)

Query: 65  ISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRF 124
           I             HL+  L          L       LT  +  G  A     L  L F
Sbjct: 294 IERVKDFSYNFGWQHLE--LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 125 ISFTFNKLS--GSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG 182
           +  + N LS  G         + L+ L L  N +   + ++   L +LE LD   + +  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 183 SIPSGI-RNLSNLFNLNLGYNNLQ 205
                +  +L NL  L++ + + +
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTR 434

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 31/148 (20%), Positives = 56/148 (37%), Gaps = 18/148 (12%)

Query: 75  TALNHLDMG---LGGTIPSHLGNL----LFLMSLDLTLNNFHGHLAHELGQLRRLRFISF 127
           T L HLD+    +     + L  L    L  +SLDL+LN  +  +     +  RL  ++ 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTL 207

Query: 128 TFNKLSGSIP-TWIGVLSKLRILSLCNNSLTG------LIPNSLFNLSKLEMLDAMFNVI 180
             N  S ++  T I  L+ L +  L                ++L  L  L + +     +
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267

Query: 181 DGS---IPSGIRNLSNLFNLNLGYNNLQ 205
           D     I      L+N+ + +L    ++
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 26/131 (19%), Positives = 49/131 (37%), Gaps = 7/131 (5%)

Query: 75  TALNHLDM---GLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
             L  LD+    L    P+   +L  L  L+++ NNF          L  L+ + ++ N 
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529

Query: 132 LSGSIPTWIG-VLSKLRILSLCNNSLTGLIPNSLF--NLSKLEMLDAMFNVIDGSIPSGI 188
           +  S    +    S L  L+L  N       +  F   +     L      ++ + PS  
Sbjct: 530 IMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

Query: 189 RNLSNLFNLNL 199
           + +  + +LN+
Sbjct: 590 QGMP-VLSLNI 599

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 21/131 (16%), Positives = 33/131 (25%), Gaps = 10/131 (7%)

Query: 78  NHLDMGLGGTIPSHLGNLLFLMSLDLTLNN---FHGHLAHELGQLRRLRFISFTFNKLSG 134
              +  L     S L  L  L   +  L     +   +      L  +   S     +  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNL 194
                       + L L N          L +L +L           G       +L +L
Sbjct: 297 VKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS-----NKGGNAFSEVDLPSL 349

Query: 195 FNLNLGYNNLQ 205
             L+L  N L 
Sbjct: 350 EFLDLSRNGLS 360

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.8 bits (200), Expect = 5e-18
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 2/119 (1%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
            +P  L     +  L+LT N      A    +  +L  +   FN +S   P     L  L
Sbjct: 18  QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           ++L+L +N L+ L   +    + L  L  M N I     +      NL  L+L +N L 
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 80.0 bits (198), Expect = 7e-18
 Identities = 29/132 (21%), Positives = 47/132 (35%), Gaps = 3/132 (2%)

Query: 77  LNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLS 133
           +  L++    L     ++      L SLD+  N           +L  L+ ++   N+LS
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 134 GSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSN 193
                     + L  L L +NS+  +  N       L  LD   N +  +       L N
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146

Query: 194 LFNLNLGYNNLQ 205
           L  L L  N +Q
Sbjct: 147 LQELLLSNNKIQ 158

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 77.7 bits (192), Expect = 4e-17
 Identities = 37/163 (22%), Positives = 60/163 (36%), Gaps = 11/163 (6%)

Query: 49  LANNWAMSSPICNWIGISCGLPHQRVTALNHLDMG---LGGTIPSHLGNLLFLMSLDLTL 105
           L+N++     + N   +S        + L+ L++    +          L  L  LDL L
Sbjct: 360 LSNSFTSLRTLTNETFVSLAH-----SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414

Query: 106 NNFHGHL-AHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGL--IPN 162
           N     L   E   L  +  I  ++NK          ++  L+ L L   +L  +   P+
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 163 SLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
               L  L +LD   N I       +  L  L  L+L +NNL 
Sbjct: 475 PFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 29/139 (20%), Positives = 42/139 (30%), Gaps = 5/139 (3%)

Query: 72  QRVTALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFT 128
            R + L  LD+G   +    P     L  L  L+L  N               L  +   
Sbjct: 46  TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105

Query: 129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS-- 186
            N +             L  L L +N L+     +   L  L+ L    N I        
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165

Query: 187 GIRNLSNLFNLNLGYNNLQ 205
            I   S+L  L L  N ++
Sbjct: 166 DIFANSSLKKLELSSNQIK 184

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
           T L  L +    +     +       L++LDL+ N           QL  L+ +  + NK
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 132 LSGSIPTWIGVL--SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIR 189
           +       + +   S L+ L L +N +    P     + +L  L      +  S+   + 
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 190 ---NLSNLFNLNLGYNNLQ 205
                +++ NL+L  + L 
Sbjct: 217 LELANTSIRNLSLSNSQLS 235

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 86  GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLS--------GSIP 137
            + PS    L  L  LDL+ NN        L  L +L  +    N L+        G   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 138 TWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNL 197
            ++  LS L IL+L +N    +      +L +L+++D   N ++    S   N  +L +L
Sbjct: 530 YFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589

Query: 198 NLGYNNLQ 205
           NL  N + 
Sbjct: 590 NLQKNLIT 597

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 12/146 (8%)

Query: 72  QRVTALNHLDM---GLGGTIPSHLGNLLFLMSLDLTLNN--------FHGHLAHELGQLR 120
           Q +  L  LD+    +       L  L  L  LDL  NN          G   + L  L 
Sbjct: 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS 536

Query: 121 RLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVI 180
            L  ++   N            L +L+I+ L  N+L  L  +   N   L+ L+   N+I
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

Query: 181 DGSIPSGIR-NLSNLFNLNLGYNNLQ 205
                        NL  L++ +N   
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.0 bits (172), Expect = 2e-14
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 19/165 (11%)

Query: 55  MSSPICNWIGISCGLPHQRVTALNHLDMG---LGGTIPSHLGNLLF--LMSLDLTLNNFH 109
           +   +   + +           + +L +    L  T  +    L +  L  LDL+ NN +
Sbjct: 207 LGPSLTEKLCLELANTS-----IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 110 GHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN---------SLTGLI 160
                    L +L +    +N +       +  L  +R L+L  +         SL  + 
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 161 PNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
             S   L  LE L+   N I G   +    L NL  L+L  +   
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 17/148 (11%)

Query: 75  TALNHLDMG---LGGTIPSHLG---NLLFLMSLDLTLNNFHGHLAHELGQLR--RLRFIS 126
             L  L +    LG ++   L        + +L L+ +            L+   L  + 
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254

Query: 127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSI-- 184
            ++N L+         L +L    L  N++  L  +SL  L  +  L+   +    SI  
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 185 -------PSGIRNLSNLFNLNLGYNNLQ 205
                      + L  L +LN+  N++ 
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 8e-13
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 5/127 (3%)

Query: 84  LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPT----W 139
           L          L  L  L++  N+  G  ++    L  L+++S + +  S    T     
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376

Query: 140 IGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG-IRNLSNLFNLN 198
               S L IL+L  N ++ +  ++   L  LE+LD   N I   +     R L N+F + 
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 199 LGYNNLQ 205
           L YN   
Sbjct: 437 LSYNKYL 443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 16/146 (10%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHL---------AHELGQLRRL 122
             L +  +    +       L  L  +  L+L  +     +               L+ L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 123 RFISFTFNKLSGSIPTWIGVLSKLRILSLCNN--SLTGLIPNSLFNL--SKLEMLDAMFN 178
             ++   N + G        L  L+ LSL N+  SL  L   +  +L  S L +L+   N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 179 VIDGSIPSGIRNLSNLFNLNLGYNNL 204
            I          L +L  L+LG N +
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEI 417

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 4/100 (4%)

Query: 75  TALNHLDM---GLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
           + L+ L++   G          +L  L  +DL LNN +   A        L+ ++   N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 132 LSGSIPTWIG-VLSKLRILSLCNNSLTGLIPNSLFNLSKL 170
           ++       G     L  L +  N       +  + ++ +
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.8 bits (189), Expect = 9e-17
 Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 12/151 (7%)

Query: 65  ISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRF 124
            +           N               NL  L  ++L        L   L  L  L+ 
Sbjct: 460 FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519

Query: 125 ISFTFNKLSG---------SIPTWIGVLSKLRILSLCNNSLTGLIPN-SLFNLSKLEMLD 174
           ++   N+             +        K++I  +  N+L     + SL  + KL +LD
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLD 579

Query: 175 AMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            + N +             L +L L YN ++
Sbjct: 580 CVHNKV--RHLEAFGTNVKLTDLKLDYNQIE 608

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 7e-13
 Identities = 25/158 (15%), Positives = 43/158 (27%), Gaps = 37/158 (23%)

Query: 85  GGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLS-------GSIP 137
             +        +   ++ L+ N               +  I  + N ++           
Sbjct: 662 NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721

Query: 138 TWIGVLSKLRILSLCNNSLTGL------------------------IPNSLFNLSKLEML 173
                   L  + L  N LT L                         P    N S+L+  
Sbjct: 722 GNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAF 781

Query: 174 ------DAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
                 DA  N I    P+GI    +L  L +G N+++
Sbjct: 782 GIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 9e-13
 Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 6/123 (4%)

Query: 86  GTIPSHLGNLLFLMSLDLTLNNFHG-HLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLS 144
             +         +    +  NN      +  L ++ +L  +    NK+   +    G   
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNV 595

Query: 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS--GIRNLSNLFNLNLGYN 202
           KL  L L  N +  +  +      ++E L    N +   IP+    +++  + +++  YN
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654

Query: 203 NLQ 205
            + 
Sbjct: 655 KIG 657

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 1e-12
 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 6/130 (4%)

Query: 77  LNHLDMGLGGTIPSHLGNLLFLMSLDLT-LNNFHGHLAHELGQLRRLRFISFTFNKLSGS 135
           L           P    + + L    +  L N    ++  + +L +L+ I F  +  +  
Sbjct: 404 LQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD 463

Query: 136 IPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLF 195
                         +            S  NL  L  ++         +P  + +L  L 
Sbjct: 464 NIA-----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 196 NLNLGYNNLQ 205
           +LN+  N   
Sbjct: 519 SLNIACNRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 23/135 (17%), Positives = 50/135 (37%), Gaps = 17/135 (12%)

Query: 87  TIPS--HLGNLLFLMSLDLTLNNFHGHLAH-----ELGQLRRLRFISFTFNKLSGSIPTW 139
            IP+  +  ++  + S+D + N       +     +  +      ++ ++N++       
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL 692

Query: 140 IGVLSKLRILSLCNNSLTGL-------IPNSLFNLSKLEMLDAMFNVIDGSIPSGIR--N 190
               S +  + L NN +T +          +  N   L  +D  FN +  S+    R   
Sbjct: 693 FATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATT 751

Query: 191 LSNLFNLNLGYNNLQ 205
           L  L N+++ YN   
Sbjct: 752 LPYLSNMDVSYNCFS 766

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 8e-09
 Identities = 33/204 (16%), Positives = 55/204 (26%), Gaps = 41/204 (20%)

Query: 30  TDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIP 89
            D  AL A       + +    NW   S   N    S             LDM  G    
Sbjct: 269 KDYKALKAI------WEALDGKNWRYYSGTINNTIHSLNWN-----FNKELDM-WGDQPG 316

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
             L N   +  L L      G +   +GQL  L+ +SF  +  + S   +        + 
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 150 SLCNNSLTGLIPN-SLFNLSKLEMLDAMFNVIDG-------------------------- 182
               + +        L    +L + D + + I+                           
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 183 --SIPSGIRNLSNLFNLNLGYNNL 204
              I   I+ L+ L  +    +  
Sbjct: 437 ITFISKAIQRLTKLQIIYFANSPF 460

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 14/128 (10%)

Query: 87  TIPSHL--GNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS------FTFNKLSGSIPT 138
           ++        L +L ++D++ N F      +     +L+            N++    PT
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800

Query: 139 WIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVI-DGSIPSGIRNLSNLFNL 197
            I     L  L + +N +   +   L    +L +LD   N      + S    +      
Sbjct: 801 GITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGM-Y 856

Query: 198 NLGYNNLQ 205
            L Y+  Q
Sbjct: 857 VLLYDKTQ 864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 17/142 (11%), Positives = 43/142 (30%), Gaps = 17/142 (11%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
           T L    MG                     +      +     +   L+ L  +      
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENE-----NSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 132 LSGSIPTWIGVLSKLRILSLCNNSLTGL--------IPNSLFNLSKLEMLDAMFNVI-DG 182
               +PT++  L +++++++  N                      K++++   +N +   
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 183 SIPSGIRNLSNLFNLNLGYNNL 204
            + + ++ +  L  L   YN L
Sbjct: 321 PVETSLQKMKKLGMLECLYNQL 342

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 14/143 (9%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
             L  L+     L G +P+  G+ + L SL+L  N      A+  G   ++  +SF  NK
Sbjct: 330 KKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK 388

Query: 132 LSGSIPTW--IGVLSKLRILSLCNNSLTGL-------IPNSLFNLSKLEMLDAMFNVIDG 182
           L   IP       +S +  +    N +  +       +  + F    +  ++   N I  
Sbjct: 389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK 447

Query: 183 SIPSGIRNLSNLFNLNLGYNNLQ 205
                    S L ++NL  N L 
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLT 470

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 29/181 (16%), Positives = 46/181 (25%), Gaps = 9/181 (4%)

Query: 31  DQSALLAFKAHVVDYRSALANNW-AMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIP 89
                L+  A  +    AL   W A++    +  G     P         LDM  G    
Sbjct: 17  IVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGT-QPGANWNFNKELDM-WGAQPG 74

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSG----SIPTWIGVLSK 145
             L +   +  L L      G +   +GQL  L  ++   +          P  I     
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 146 LRILSLCNNSLTGLIPNSLF--NLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNN 203
                           +     + S L       +    SI    R       +    NN
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 204 L 204
           +
Sbjct: 195 I 195

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.3 bits (170), Expect = 4e-14
 Identities = 20/149 (13%), Positives = 48/149 (32%), Gaps = 18/149 (12%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAH-ELGQLRRLRFISFTFN 130
             L  L++    +     +  G    + +L    N         +   +  +  I F++N
Sbjct: 353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412

Query: 131 KLSG-------SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG- 182
           ++          +         +  ++L NN ++          S L  ++ M N++   
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEI 472

Query: 183 ------SIPSGIRNLSNLFNLNLGYNNLQ 205
                       +N   L +++L +N L 
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLT 501

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 18/149 (12%), Positives = 41/149 (27%), Gaps = 22/149 (14%)

Query: 77  LNHLDMGLGGTIPSHLGNLLF--LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSG 134
              + M    T   +     F  L+   +  +     +        +   I    N ++ 
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT- 196

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGL-------------------IPNSLFNLSKLEMLDA 175
            +   +  L+KLR   + N+                              NL  L  ++ 
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 176 MFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
                   +P+ ++ L  +  +N+  N  
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRG 285

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 67.4 bits (165), Expect = 2e-13
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 17/135 (12%)

Query: 87  TIPSHL--GNLLFLMSLDLTLNNFHG-------HLAHELGQLRRLRFISFTFNKLSGSIP 137
            IP+     ++  + ++D + N            L     +   +  I+ + N++S    
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 138 TWIGVLSKLRILSLCNNSLTGL-------IPNSLFNLSKLEMLDAMFNVIDGSIPS-GIR 189
                 S L  ++L  N LT +          +  N   L  +D  FN +          
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

Query: 190 NLSNLFNLNLGYNNL 204
            L  L  ++L YN+ 
Sbjct: 511 TLPYLVGIDLSYNSF 525

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 10/120 (8%)

Query: 92  LGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS------FTFNKLSGSIPTWIGVLSK 145
              L +L+ +DL+ N+F      +      L+            N+     P  I +   
Sbjct: 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 146 LRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           L  L + +N +  +          + +LD   N       S +          L Y+  Q
Sbjct: 568 LTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 126 SFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG--- 182
           +   +         +    ++  LSL     +G +P+++  L++LE+L    +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 183 -SIPSGIRNLSNLFNLNLGYNNLQ 205
              P GI    +         + Q
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQ 146

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 24/118 (20%), Positives = 35/118 (29%)

Query: 88  IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLR 147
             +    L+ L  LDLT    +           RL  +  T N L     T +     L+
Sbjct: 49  QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            L      ++ +    L N   LE L    N I             L  L+   N + 
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 5e-13
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 2/112 (1%)

Query: 95  LLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN 154
            + + S++L  + F    ++       L+ +  T   LS  +P+ +  LS L+ L L  N
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN 311

Query: 155 SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG-IRNLSNLFNLNLGYNNLQ 205
               L   S  N   L  L    N     + +G + NL NL  L+L +++++
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 3/137 (2%)

Query: 72  QRVTALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFT 128
            R+  L  LD+    +         +   L +L LT N         L   + L+ + F 
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
              +S      +     L  L L +N ++ +     F   KL++LD   N I       +
Sbjct: 114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173

Query: 189 RNLSNLFNLNLGYNNLQ 205
            +L    NL+L  N   
Sbjct: 174 SSLQQATNLSLNLNGND 190

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 7/137 (5%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHG---HLAHELGQLRRLRFISFT 128
             L  L++    L  +       L  L  L+L  N+F        + L  L RL  +  +
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
           F  LS         L  +  + L +N LT     +L +L  +  L+   N I   +PS +
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLL 543

Query: 189 RNLSNLFNLNLGYNNLQ 205
             LS    +NL  N L 
Sbjct: 544 PILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 4/124 (3%)

Query: 86  GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP-TWIGVLS 144
                 L NL  L SL+L+ N           +  +L  +   F +L      +    L 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSI---PSGIRNLSNLFNLNLGY 201
            L++L+L ++ L          L  L+ L+   N          + ++ L  L  L L +
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 202 NNLQ 205
            +L 
Sbjct: 486 CDLS 489

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 36/141 (25%), Positives = 51/141 (36%), Gaps = 4/141 (2%)

Query: 68  GLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISF 127
           GL    V ++N           +       L  LDLT  +    L   L  L  L+ +  
Sbjct: 250 GLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVL 308

Query: 128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLF-NLSKLEMLDAMFNVIDGSIPS 186
           + NK              L  LS+  N+    +      NL  L  LD   + I+ S   
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 187 G--IRNLSNLFNLNLGYNNLQ 205
              +RNLS+L +LNL YN   
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPL 389

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 10/140 (7%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
             L  L +G   +             L  LD   N  H     ++  L++   +S   N 
Sbjct: 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 132 LS-GSIPTWIGVLSKLRILSLCNNSLTGLIP-----NSLFNLSKLEMLDAMFNVIDGSIP 185
                I       +  + L+        +I      +++ +L      D     I  ++ 
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248

Query: 186 SGIRNLSNLFNLNLGYNNLQ 205
            G+  + ++ ++NL  +   
Sbjct: 249 EGLCEM-SVESINLQKHYFF 267

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 2/71 (2%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNL 194
            IP    + +    L    N L  +   +   L  L  LD     I        ++   L
Sbjct: 26  EIPG--TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83

Query: 195 FNLNLGYNNLQ 205
             L L  N L 
Sbjct: 84  DTLVLTANPLI 94

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
            +P  + +     ++DL+ N      ++       L+++  +  ++          L  L
Sbjct: 25  KVPDDIPS--STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
             L L  N +    P S   L+ LE L A+   +       I  L  L  LN+ +N + 
Sbjct: 83  SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.3 bits (170), Expect = 4e-14
 Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 88  IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLR 147
                 N   L  LDL+              L  L  +  T N +    P     L+ L 
Sbjct: 48  KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNNLQ 205
            L      L  L    +  L  L+ L+   N I    +P+   NL+NL +++L YN +Q
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 1/122 (0%)

Query: 84  LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHE-LGQLRRLRFISFTFNKLSGSIPTWIGV 142
                      L  L +L +  N+F  +           L F+  +  +L          
Sbjct: 436 TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495

Query: 143 LSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202
           L +L++L++ +N+L  L  +    L  L  LD  FN I+ S         +L   NL  N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 203 NL 204
           ++
Sbjct: 556 SV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.2 bits (162), Expect = 5e-13
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 1/118 (0%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPT-WIGVLSKLR 147
            S   +L  L+ LD++  N           L  L  +    N    +  +      + L 
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            L L    L  +       L +L++L+   N +     S    L +L  L+  +N ++
Sbjct: 477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 31/142 (21%), Positives = 53/142 (37%), Gaps = 5/142 (3%)

Query: 68  GLPHQRVTALNHLDM-GLGGTIPSHLGNLLFLMSLDLTLNNFH--GHLAHELGQLRRLRF 124
             P   +  L  L +    G+I      L  L  LDL+ N     G  ++       LR 
Sbjct: 321 QFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380

Query: 125 ISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLF-NLSKLEMLDAMFNVIDGS 183
           +  +FN     +      L +L+ L   +++L  +   S F +L KL  LD  +      
Sbjct: 381 LDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439

Query: 184 IPSGIRNLSNLFNLNLGYNNLQ 205
                  L++L  L +  N+ +
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFK 461

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 54.3 bits (131), Expect = 4e-09
 Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 9/138 (6%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
             L++L +    +    P     L  L +L           +  +GQL  L+ ++   N 
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 132 LSG-SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEM----LDAMFNVIDGSIPS 186
           +    +P +   L+ L  + L  N +  +  N L  L +       LD   N I   I  
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQD 198

Query: 187 GIRNLSNLFNLNLGYNNL 204
                  L  L L  N  
Sbjct: 199 QAFQGIKLHELTLRGNFN 216

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 15/146 (10%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLN---NFHGHLAHELGQLRRLRFISFT 128
           T L H+D+    +     + L  L     ++L+L+   N    +  +  Q  +L  ++  
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212

Query: 129 FNKLSGSIP-TWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLE--------MLDAMFNV 179
            N  S +I  T +  L+ L +  L            +F  S +E             +  
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272

Query: 180 IDGSIPSGIRNLSNLFNLNLGYNNLQ 205
                      L+N+  ++L   +++
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIK 298

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 89  PSHLGNL--LFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           PS +  L  + +    LT  N       +   L  +  +S     +   +        K 
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPK-HFKW 309

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           + LS+    L         +L  L+ L    N    SI      L +L  L+L  N L 
Sbjct: 310 QSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALS 363

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 7e-12
 Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 87  TIPSHLGNLLFLMSLDLTLNN---------FHGHLAHELGQLRRLRFISFTFNKLSGSIP 137
            +P+ + +L  L  L +                  + E   L  L+ +   +  +  S+P
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLP 199

Query: 138 TWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNL 197
             I  L  L+ L + N+ L+ L   ++ +L KLE LD        + P      + L  L
Sbjct: 200 ASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258

Query: 198 NLGYNN 203
            L   +
Sbjct: 259 ILKDCS 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 62.3 bits (152), Expect = 7e-12
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           ++P+ + NL  L SL +  +     L   +  L +L  +         + P   G  + L
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           + L L + S    +P  +  L++LE LD    V    +PS I  L     + +  +  
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 12/128 (9%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
             P     L  L  + +        L   + Q   L  ++   N L  ++P  I  L++L
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152

Query: 147 RILSL-CNNSLTGL--------IPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNL 197
           R LS+     LT L               L  L+ L   +  I  S+P+ I NL NL +L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211

Query: 198 NLGYNNLQ 205
            +  + L 
Sbjct: 212 KIRNSPLS 219

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 9/121 (7%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLS-- 144
                L       + D        H A         +  + T   L  +    +   +  
Sbjct: 27  PYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRALK-ATADLLEDATQP 81

Query: 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
               L L +  L    P+  F LS L+ +      +   +P  ++  + L  L L  N L
Sbjct: 82  GRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL 139

Query: 205 Q 205
           +
Sbjct: 140 R 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 25/117 (21%), Positives = 40/117 (34%), Gaps = 2/117 (1%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
                   L+ L SL L        L   +  L+ L+ +    + LS ++   I  L KL
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKL 231

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNN 203
             L L   +     P      + L+ L         ++P  I  L+ L  L+L    
Sbjct: 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFT-FNKLSGSIPTWIGVLSK 145
            +   + +L  L  LDL       +     G    L+ +     + L  ++P  I  L++
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQ 278

Query: 146 LRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID 181
           L  L L        +P+ +  L    ++    ++  
Sbjct: 279 LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.4 bits (116), Expect = 4e-07
 Identities = 13/81 (16%), Positives = 25/81 (30%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
             P   G    L  L L   +    L  ++ +L +L  +          +P+ I  L   
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303

Query: 147 RILSLCNNSLTGLIPNSLFNL 167
            I+ +  +    L  +     
Sbjct: 304 CIILVPPHLQAQLDQHRPVAR 324

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 88  IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLR 147
           IP +L       +LDL+ N      ++       L+ +  +  ++          LS L 
Sbjct: 22  IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            L L  N +  L   +   LS L+ L A+   +       I +L  L  LN+ +N +Q
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 3/119 (2%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWI-GVLSKLR 147
            S   +L  L+ LD++  +           L  L  +    N    +    I   L  L 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
            L L    L  L P +  +LS L++L+   N +  S+P GI   L++L  + L  N   
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 7/144 (4%)

Query: 67  CGLPHQRVTALNHLDMG--LGGTIPSHLGNLLFLMSLDLTLNNFH--GHLAHELGQLRRL 122
              P  ++ +L  L      GG   S   +L  L  LDL+ N     G  +        L
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 123 RFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLF-NLSKLEMLDAMFNVID 181
           +++  +FN +  ++ +    L +L  L   +++L  +   S+F +L  L  LD       
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 182 GSIPSGIRNLSNLFNLNLGYNNLQ 205
            +       LS+L  L +  N+ Q
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQ 458

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 8/142 (5%)

Query: 72  QRVTALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFT 128
                L  LD+    +         +L  L +L LT N            L  L+ +   
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108

Query: 129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLF-NLSKLEMLDAMFNVIDGSIPSG 187
              L+      IG L  L+ L++ +N +        F NL+ LE LD   N I     + 
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 188 IRNLSNL----FNLNLGYNNLQ 205
           +R L  +     +L+L  N + 
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMN 190

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 4/119 (3%)

Query: 72  QRVTALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHE-LGQLRRLRFISF 127
             +  L +LD+               L  L  L +  N+F  +   +   +LR L F+  
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477

Query: 128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS 186
           +  +L    PT    LS L++L++ +N L  +       L+ L+ +    N  D S P 
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 7/116 (6%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
           S L NL  + SL+L  N+    L+  L  +  L +++ T +K+    P  I  L+ L  L
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           SL  N +  + P  L +L+ L    A  N I    P  + N++ L +L +G N + 
Sbjct: 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 8/115 (6%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
           + + NL  L SL L  N         L  L  L + +   N+++   P  +  +++L  L
Sbjct: 171 TPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
            + NN +T L P  L NLS+L  L+   N I  S  + +++L+ L  LN+G N +
Sbjct: 227 KIGNNKITDLSP--LANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQI 277

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.8 bits (138), Expect = 5e-10
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           T  S L NL  L  L L  +N        L  L ++  ++   N     +   +  ++ L
Sbjct: 101 TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGL 157

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
             L++  + +  + P  + NL+ L  L   +N I+   P  + +L++L       N + 
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 9e-10
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 92  LGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151
           L NL  L  L++  N       + +  L +L+ ++   N++S      +  LS+L  L L
Sbjct: 239 LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFL 294

Query: 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            NN L       +  L+ L  L    N I    P  + +LS + + +     ++
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
               +L   +   L   +    +     +L  +  +     K++ SI   I  L+ L  L
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYL 71

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           +L  N +T + P  L NL KL  L    N I  +  S ++NL+NL  L L  +N+
Sbjct: 72  NLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNI 122

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 3e-06
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 4/94 (4%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           +  + + +L  L  L++  N         L  L +L  +    N+L       IG L+ L
Sbjct: 256 SDINAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVI 180
             L L  N +T + P  L +LSK++  D    VI
Sbjct: 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 143 LSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202
           L++     L   S+T ++      L  +  L      +  +   GI  L+NL  LNL  N
Sbjct: 21  LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV--ASIQGIEYLTNLEYLNLNGN 76

Query: 203 NLQ 205
            + 
Sbjct: 77  QIT 79

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 116 LGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDA 175
           +     ++ ++      +   P  I  LS L  L +    +T     +L  L+ L +LD 
Sbjct: 62  IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 176 MFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
             +  D SI + I  L  + +++L YN  
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 7e-10
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 3/115 (2%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
           + +  L  L  L +   +        L  L  L  +  + +    SI T I  L K+  +
Sbjct: 82  NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
            L  N     I   L  L +L+ L+  F+ +      GI +   L  L      +
Sbjct: 142 DLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 6/109 (5%)

Query: 75  TALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
           + L  L +    +      +L  L  L  LD++ +     +  ++  L ++  I  ++N 
Sbjct: 88  SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 132 LSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVI 180
               I   +  L +L+ L++  + +       + +  KL  L A    I
Sbjct: 148 AITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTI 193

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 88  IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSI-PTWIGVLSKL 146
           +P  L        L L+ N      A     L +L+ +         +I       L  L
Sbjct: 19  VPQVLNTTE---RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSI--PSGIRNLSNLFNLNLGYNNL 204
           RIL L ++ +  L P++   L  L  L   F  +  ++      RNL  L  L+L  N +
Sbjct: 76  RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 205 Q 205
           +
Sbjct: 136 R 136

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.7 bits (137), Expect = 9e-10
 Identities = 25/111 (22%), Positives = 45/111 (40%)

Query: 95  LLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN 154
              +  LDL+        +     L+ L+ ++  +NK++         L  L++L+L  N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 155 SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            L  L  ++ + L K+  +D   N I        + L  L  L+L  N L 
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 2/125 (1%)

Query: 83  GLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRR--LRFISFTFNKLSGSIPTWI 140
            +  +    L     +M      +N      +    L R  +R +  +   +        
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286

Query: 141 GVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLG 200
             L  L++L+L  N +  +   + + L  L++L+  +N++     S    L  +  ++L 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 201 YNNLQ 205
            N++ 
Sbjct: 347 KNHIA 351

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 2/115 (1%)

Query: 93  GNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVL--SKLRILS 150
           GN   +       N      A  L     +    F F+ +          L  S +R L 
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272

Query: 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           L +  +  L       L  L++L+  +N I+         L NL  LNL YN L 
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
           F  L+  +P    VL+    L L  N +  +  +S   L +L++L+        +I    
Sbjct: 13  FCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 189 -RNLSNLFNLNLGYNNLQ 205
            RNL NL  L+LG + + 
Sbjct: 69  FRNLPNLRILDLGSSKIY 86

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 7/117 (5%)

Query: 96  LFLMSLDLTLNNFHG-HLAHELGQLRRLRFISFTFNKLSG-SIPTWIGVLSKLRILSLCN 153
           L    + L+ N      + + L ++  L+ +    N+ S  S          L  L L  
Sbjct: 401 LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE 460

Query: 154 NSL-----TGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           N L     T L  +    LS L++L    N ++   P    +L+ L  L+L  N L 
Sbjct: 461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 8/123 (6%)

Query: 88  IPSHLGNLLFLMSLDLTLNNFHGHLAHEL-GQLRRLRFISFTFNKLSGSIPTWIGV---- 142
           I   L  +  L  L L  N F      +   +   L  +    N L  +  T +      
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 143 -LSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGY 201
            LS L++L L +N L  L P    +L+ L  L    N +   +       +NL  L++  
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL-TVLSHND-LPANLEILDISR 535

Query: 202 NNL 204
           N L
Sbjct: 536 NQL 538

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 6/123 (4%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHE--LGQLRRLRFISFTFNKLSG-SIPTWIGVLSK 145
           P     L  L  L L        +  +     L+ L  +  + N++    +    G L+ 
Sbjct: 90  PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149

Query: 146 LRILSLCNNSLTGLIPNSLFNLS--KLEMLDAMFNVIDGSIPSGIRNLSNLF-NLNLGYN 202
           L+ +   +N +  +  + L  L    L       N +   +        N F N+ L   
Sbjct: 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209

Query: 203 NLQ 205
           ++ 
Sbjct: 210 DVS 212

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 21/138 (15%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHG-HLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLS--K 145
             +  NL  L  LDL+ N     +L    G+L  L+ I F+ N++       +  L    
Sbjct: 116 DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

Query: 146 LRILSLCNNSLTGLIPNSLF------------------NLSKLEMLDAMFNVIDGSIPSG 187
           L   SL  NSL   +                       N   +++     N I  S    
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235

Query: 188 IRNLSNLFNLNLGYNNLQ 205
           +    ++     G++N++
Sbjct: 236 LILAHHIMGAGFGFHNIK 253

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 26/133 (19%), Positives = 46/133 (34%), Gaps = 16/133 (12%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRI 148
                 L  L  L+L+ N      +     L ++ +I    N ++         L KL+ 
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366

Query: 149 LSLCNNSLTGLI-----------PNSLFNLSKLEM----LDAMFNVIDG-SIPSGIRNLS 192
           L L +N+LT +             N L  L K+ +    +    N ++   I   +  + 
Sbjct: 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426

Query: 193 NLFNLNLGYNNLQ 205
           +L  L L  N   
Sbjct: 427 HLQILILNQNRFS 439

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 5e-10
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 5/118 (4%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHG-HLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLR 147
               G    +  LDL LN     + A        L  ++  +N +   +   +   +KL+
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLK 194

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            L L +N L   +     + + +  +    N +   I   +R   NL + +L  N   
Sbjct: 195 TLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 119 LRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN 178
             R +    T + L  ++ +       ++ L L  N L+ +    L   +KLE+L+   N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 179 VIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           V+       + +LS L  L+L  N +Q
Sbjct: 69  VL--YETLDLESLSTLRTLDLNNNYVQ 93

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 9/120 (7%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
                L +L  L +LDL  N        EL     +  +    N +S  +          
Sbjct: 71  YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS--CSRGQGK 122

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNNLQ 205
           + + L NN +T L        S+++ LD   N ID  +      +   L +LNL YN + 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 88  IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLR 147
           I     N        +T ++    LA        ++ +  + N LS      +   +KL 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           +L+L +N L   +   L +LS L  LD   N +       +    ++  L+   NN+ 
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS 112

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 13/71 (18%), Positives = 29/71 (40%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNL 194
           +I       ++ +I  + ++SL   + +   +   ++ LD   N +     + +   + L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 195 FNLNLGYNNLQ 205
             LNL  N L 
Sbjct: 61  ELLNLSSNVLY 71

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 87  TIPSH-LGNLLFLMSLDLTLNNFHGHLAHE-LGQLRRLRFISFTFNKLSGSIPTWIGVLS 144
           +IPS+    +  LM LDL       +++      L  L++++     +   +P     L 
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTP-LV 218

Query: 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG-IRNLSNLFNLNLGYNN 203
            L  L +  N    + P S   LS L+ L  M + +   I       L++L  LNL +NN
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNN 277

Query: 204 LQ 205
           L 
Sbjct: 278 LS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.8 bits (114), Expect = 7e-07
 Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 8/108 (7%)

Query: 100 SLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILSLCNNSL 156
            L+L  NN     A     L  L  +    N +   I    G    L+ L  L L +N L
Sbjct: 79  YLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEV--GAFNGLASLNTLELFDNWL 135

Query: 157 TGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNN 203
           T +   +   LSKL  L    N I  SIPS     + +L  L+LG   
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELK 182

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSN 193
            +P   G+ S  R L+L  N++  +  ++  +L  LE+L    N I   I  G    L++
Sbjct: 68  EVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLAS 124

Query: 194 LFNLNLGYNNLQ 205
           L  L L  N L 
Sbjct: 125 LNTLELFDNWLT 136

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 120 RRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNV 179
              R+++   N +          L  L +L L  NS+  +   +   L+ L  L+   N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 180 IDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
           +   IPSG    LS L  L L  N ++
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIE 160

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 19/84 (22%), Positives = 36/84 (42%)

Query: 91  HLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS 150
           +L  L+ L  L+++ N+F          L  L+ +    +++S         L+ L  L+
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272

Query: 151 LCNNSLTGLIPNSLFNLSKLEMLD 174
           L +N+L+ L  +    L  L  L 
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELH 296

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.5 bits (134), Expect = 1e-09
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 6/122 (4%)

Query: 87  TIPSHL-GNLLFLMSLDLTLNNFHGHLAHE-LGQLRRLRFISFTFNKLSGSIPTWIGVLS 144
           +IPS+    +  L  LDL       +++      L  LR+++     L   IP     L 
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP-LI 207

Query: 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG-IRNLSNLFNLNLGYNN 203
           KL  L L  N L+ + P S   L  L+ L  + + I   I      NL +L  +NL +NN
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNN 266

Query: 204 LQ 205
           L 
Sbjct: 267 LT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 8/139 (5%)

Query: 72  QRVTALNHLDMGLGGTI----PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISF 127
            R+ +L  LD+G    +          L  L  L+L + N        L  L +L  +  
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDL 214

Query: 128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG 187
           + N LS   P     L  L+ L +  + +  +  N+  NL  L  ++   N +   +P  
Sbjct: 215 SGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHD 273

Query: 188 I-RNLSNLFNLNLGYNNLQ 205
           +   L +L  ++L +N   
Sbjct: 274 LFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 2/105 (1%)

Query: 100 SLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGL 159
            L+L  N       +    LR L  +  + N +          L+ L  L L +N LT +
Sbjct: 68  LLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI 127

Query: 160 IPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNN 203
              +   LSKL+ L    N I+ SIPS     + +L  L+LG   
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK 171

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSN 193
            +P   G+ +  R+L+L  N +  +  NS  +L  LE+L    N I  +I  G    L+N
Sbjct: 57  EVPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLAN 113

Query: 194 LFNLNLGYNNLQ 205
           L  L L  N L 
Sbjct: 114 LNTLELFDNRLT 125

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 120 RRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNV 179
              R ++   N++          L  L IL L  N +  +   +   L+ L  L+   N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 180 IDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
           +  +IP+G    LS L  L L  N ++
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIE 149

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
           + L  L  L  L L  N         L  L  L  +    N+L    P  I  L  L  L
Sbjct: 259 APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           +L  N+++ + P  + +L+KL+ L    N +  S  S + NL+N+  L+ G+N + 
Sbjct: 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQIS 366

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 40/119 (33%), Positives = 51/119 (42%), Gaps = 8/119 (6%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           +  S L  L  L SL  T N         LG L  L  +S   N+L   I T +  L+ L
Sbjct: 190 SDISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLK-DIGT-LASLTNL 245

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
             L L NN ++ L P  L  L+KL  L    N I    P  +  L+ L NL L  N L+
Sbjct: 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.8 bits (130), Expect = 7e-09
 Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 9/129 (6%)

Query: 75  TALNHLDM-GLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLS 133
             +  L    LG      +  L  L  ++ + N         L  L +L  I    N+++
Sbjct: 46  DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA 103

Query: 134 GSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSN 193
              P  +  L+ L  L+L NN +T + P  L NL+ L  L+   N I  S  S +  L++
Sbjct: 104 DITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTS 157

Query: 194 LFNLNLGYN 202
           L  L+ G  
Sbjct: 158 LQQLSFGNQ 166

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           T      +L  + +L              +  L  L  I+F+ N+L+   P  +  L+KL
Sbjct: 37  TDTVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKL 92

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
             + + NN +  + P  L NL+ L  L    N I    P  ++NL+NL  L L  N +
Sbjct: 93  VDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 9/119 (7%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           +  S L  L  L  L    N         L  L  L  +  + NK+S    + +  L+ L
Sbjct: 147 SDISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNL 201

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
             L   NN ++ + P  L  L+ L+ L    N +       + +L+NL +L+L  N + 
Sbjct: 202 ESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 256

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 8/115 (6%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
                L   M   L   N    ++     L ++  +      +       +  L+ L  +
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQI 73

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           +  NN LT + P  L NL+KL  +    N I    P  + NL+NL  L L  N +
Sbjct: 74  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 124

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 6/116 (5%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
           S + +L  L  L    N         L  L  + ++S   N++S   P  +  L+++  L
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            L + + T    N   N+S    +  +   +    P+ I +  +    ++ +N   
Sbjct: 381 GLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 5/117 (4%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           +  S L NL  +  L    N         L  L R+  +       + +   +   +S  
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIP 401

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNN 203
             +     +L    P ++ +       D  +N+            S    +  G   
Sbjct: 402 NTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTT 455

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 8/133 (6%)

Query: 77  LNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHG-HLAHELGQLRRLRFISFTFNKL 132
             ++ +    +        G    +  LDL LN     + A        L  ++  +N +
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181

Query: 133 SGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLS 192
              +   +   +KL+ L L +N L   +     + + +  +    N +   I   +R   
Sbjct: 182 Y-DVKGQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 193 NLFNLNLGYNNLQ 205
           NL + +L  N   
Sbjct: 238 NLEHFDLRGNGFH 250

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 9/120 (7%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
                L +L  L +LDL  N        EL     +  +    N +S  +          
Sbjct: 71  YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVS--CSRGQGK 122

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNNLQ 205
           + + L NN +T L        S+++ LD   N ID  +      +   L +LNL YN + 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 4e-08
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 119 LRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN 178
             R +    T + L  ++ +       ++ L L  N L+ +    L   +KLE+L+   N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 179 VIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           V+       + +LS L  L+L  N +Q
Sbjct: 69  VL--YETLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 93  GNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152
            N        +T ++    LA        ++ +  + N LS      +   +KL +L+L 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           +N L   +   L +LS L  LD   N +       +    ++  L+   NN+
Sbjct: 67  SNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNI 111

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 10/133 (7%)

Query: 72  QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
            R       D  L   + S   +   +  LDL+ N      A +L    +L  ++ + N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 132 LSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNL 191
           L  ++   +  LS LR L L NN +       L     +E L A  N I   +       
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCSR--G 119

Query: 192 SNLFNLNLGYNNL 204
               N+ L  N +
Sbjct: 120 QGKKNIYLANNKI 132

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.0 bits (130), Expect = 6e-09
 Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%)

Query: 87  TIPSH-LGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSK 145
           +IP+  L +L  L+ L L   N +    +   +L RL+ +  +      ++         
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 146 LRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNL 204
           L  LS+ + +LT +   ++ +L  L  L+  +N I  +I   +   L  L  + L    L
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL 284

Query: 205 Q 205
            
Sbjct: 285 A 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 5/138 (3%)

Query: 72  QRVTALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFT 128
           +R+  L  L++       T+  +    L L SL +T  N        +  L  LRF++ +
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256

Query: 129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
           +N +S    + +  L +L+ + L    L  + P +   L+ L +L+   N +  ++   +
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESV 315

Query: 189 -RNLSNLFNLNLGYNNLQ 205
             ++ NL  L L  N L 
Sbjct: 316 FHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 2/109 (1%)

Query: 98  LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLT 157
              LDL  N        E      L  +    N +S   P     L  LR L L +N L 
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 158 GLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
            +       LS L  LD   N I   +   + ++L NL +L +G N+L 
Sbjct: 94  LIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLYNLKSLEVGDNDLV 141

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.5 bits (121), Expect = 8e-08
 Identities = 21/117 (17%), Positives = 44/117 (37%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRI 148
                +L  L SL++  N+           L  L  ++     L+      +  L  L +
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180

Query: 149 LSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           L L + ++  +   S   L +L++L+        ++        NL +L++ + NL 
Sbjct: 181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.8 bits (129), Expect = 8e-09
 Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 15/122 (12%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
            +P     L     ++   N     L      L  L   S   N+L+  +P        L
Sbjct: 134 MLPELPALL---EYINADNNQLT-MLPELPTSLEVL---SVRNNQLT-FLPELPE---SL 182

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID---GSIPSGIRNLSNLFNLNLGYNN 203
             L +  N L  L P         E  +  F   +     IP  I +L     + L  N 
Sbjct: 183 EALDVSTNLLESL-PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241

Query: 204 LQ 205
           L 
Sbjct: 242 LS 243

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 11/121 (9%)

Query: 87  TIPSHLGNLLFLMSLDL--TLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLS 144
           +I   + N   L       T++  +        +  +        N+    +     +++
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK--ECLIN 59

Query: 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           +   L L   +L+ L P++L    ++ +L+   N +  S+P    +L     L+   N L
Sbjct: 60  QFSELQLNRLNLSSL-PDNLP--PQITVLEITQNALI-SLPELPASLE---YLDACDNRL 112

Query: 205 Q 205
            
Sbjct: 113 S 113

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.8 bits (90), Expect = 8e-04
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 15/108 (13%)

Query: 98  LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLT 157
              L L   N    L   L    ++  +  T N L  S+P        L  L  C+N L+
Sbjct: 61  FSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPA---SLEYLDACDNRLS 113

Query: 158 GLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            L P    +L  L++ +         +P     L     +N   N L 
Sbjct: 114 TL-PELPASLKHLDVDNNQLT----MLPELPALLE---YINADNNQLT 153

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 24/153 (15%), Positives = 45/153 (29%), Gaps = 9/153 (5%)

Query: 61  NWIGISCGLPHQRVTALNHLDM---GLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELG 117
           +   +   L       +  L +    L   + +    L  +  + +  +           
Sbjct: 272 SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331

Query: 118 QLRRLRFISFTFNKLSGSI---PTWIGVLSKLRILSLCNNSLTGL--IPNSLFNLSKLEM 172
            L+ L F+  + N +           G    L+ L L  N L  +      L  L  L  
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 173 LDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           LD   N     +P   +    +  LNL    ++
Sbjct: 392 LDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 7e-08
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRI 148
              L     L  L L  +  +         L  L  +  + N LS    +W G LS L+ 
Sbjct: 43  HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102

Query: 149 LSLCNNSLTGLIPNSLF-NLSKLEMLDAMFNVIDGSIPSG-IRNLSNLFNLNLGYNNLQ 205
           L+L  N    L   SLF NL+ L+ L          I       L++L  L +   +L+
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 21/84 (25%), Positives = 41/84 (48%)

Query: 122 LRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID 181
           ++ +  +FNK++      +   + L++L L ++ +  +  ++ ++L  LE LD   N + 
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87

Query: 182 GSIPSGIRNLSNLFNLNLGYNNLQ 205
               S    LS+L  LNL  N  Q
Sbjct: 88  SLSSSWFGPLSSLKYLNLMGNPYQ 111

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.0 bits (99), Expect = 6e-05
 Identities = 15/117 (12%), Positives = 39/117 (33%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRI 148
                 L  L  L++   +   + +  L  +R +  ++   ++ +  +  +  +LS +R 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 149 LSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           L L + +L     + L        +  +              L  L    L  + ++
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 16/142 (11%)

Query: 72  QRVTALNHLDMG------LGGTIPSHLGNLLFLMSLDLTLNNFH--GHLAHELGQLRRLR 123
           Q + +L  LD+             +  G    L +L L+ N+          L  L+ L 
Sbjct: 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390

Query: 124 FISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGS 183
            +  + N     +P       K+R L+L +  +  ++   +     LE+LD   N +D S
Sbjct: 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNLD-S 445

Query: 184 IPSGIRNLSNLFNLNLGYNNLQ 205
                  L  L  L +  N L+
Sbjct: 446 FSL---FLPRLQELYISRNKLK 464

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 20/132 (15%), Positives = 44/132 (33%), Gaps = 3/132 (2%)

Query: 77  LNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSI 136
           L  L   +         +       D   +           +   +R +      L   +
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 137 PTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVI---DGSIPSGIRNLSN 193
            T   +L K++ +++ N+ +  +  +   +L  LE LD   N++        +      +
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 194 LFNLNLGYNNLQ 205
           L  L L  N+L+
Sbjct: 363 LQTLVLSQNHLR 374

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 16/118 (13%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           ++P+    L  L + +  L      L      L+ L     + N+L+ S+P       +L
Sbjct: 195 SLPTLPSELYKLWAYNNRLT----SLPALPSGLKEL---IVSGNRLT-SLPVLPS---EL 243

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           + L +  N LT L P      S L  L    N +   +P  + +LS+   +NL  N L
Sbjct: 244 KELMVSGNRLTSL-PMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 19/119 (15%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           ++P     L     L +  +N    L     +L +L       N+L+ S+P        L
Sbjct: 135 SLPVLPPGL---QELSV-SDNQLASLPALPSELCKLWA---YNNQLT-SLPMLPS---GL 183

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           + LS+ +N L  L P     L KL   +     +           S L  L +  N L 
Sbjct: 184 QELSVSDNQLASL-PTLPSELYKLWAYNNRLTSLPALP-------SGLKELIVSGNRLT 234

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 8/115 (6%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           ++P     L     L +   N    L      L  L   S   N+L+  +P  +  LS  
Sbjct: 235 SLPVLPSELK---ELMV-SGNRLTSLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSE 286

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGY 201
             ++L  N L+     +L  ++            D +  S  R    L      +
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 7e-06
 Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 18/119 (15%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           T+P  L   +   +L +  +N    L     +LR L     + N+L+ S+P     L +L
Sbjct: 54  TLPDCLPAHI--TTLVIP-DNNLTSLPALPPELRTLEV---SGNQLT-SLPVLPPGLLEL 106

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            I S     L  L          L  L    N +  S+P     L     L++  N L 
Sbjct: 107 SIFSNPLTHLPALPSG-------LCKLWIFGNQL-TSLPVLPPGLQ---ELSVSDNQLA 154

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 19/119 (15%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           ++P     L     L ++ N     L     +L +L   +   N+L+ S+P        L
Sbjct: 175 SLPMLPSGLQ---ELSVSDNQLA-SLPTLPSELYKLWAYN---NRLT-SLPALPS---GL 223

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           + L +  N LT L P      S+L+ L    N +  S+P      S L +L++  N L 
Sbjct: 224 KELIVSGNRLTSL-PVLP---SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT 274

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 115 ELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLD 174
            L QL  +  +  + N+L  ++P  +  L  L +L   +N+L  +  + + NL +L+ L 
Sbjct: 458 HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELL 514

Query: 175 AMFNVIDG-SIPSGIRNLSNLFNLNLGYNNLQ 205
              N +   +    + +   L  LNL  N+L 
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 121 RLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVI 180
           R  ++    +K            + +R+L L +  LT L    L  L  +  LD   N +
Sbjct: 418 RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRL 475

Query: 181 DGSIPSGIRNLSNLFNLNLGYNNLQ 205
             ++P  +  L  L  L    N L+
Sbjct: 476 R-ALPPALAALRCLEVLQASDNALE 499

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 3e-08
 Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 5/118 (4%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRI 148
            + L     L  L+L             G L  L  +  + N+L  S+P     L  L +
Sbjct: 48  LATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTV 104

Query: 149 LSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
           L +  N LT L   +L  L +L+ L    N +  ++P G+      L  L+L  NNL 
Sbjct: 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 9/117 (7%)

Query: 93  GNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV---LSKLRIL 149
           G L  L +LDL+ N     L      L  L  +  +FN+L+ S+P   G    L +L+ L
Sbjct: 74  GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL--GALRGLGELQEL 129

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
            L  N L  L P  L    KLE L    N +   +P+G+   L NL  L L  N+L 
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 7/119 (5%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV---L 143
           ++P     L  L  LD++ N         L  L  L+ +    N+L  ++P   G+    
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPP--GLLTPT 147

Query: 144 SKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202
            KL  LSL NN+LT L    L  L  L+ L    N +  +IP G      L    L  N
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 130 NKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIR 189
           N L       +   ++L  L+L    LT L  +    L  L  LD   N +  S+P   +
Sbjct: 41  NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQ-SLPLLGQ 97

Query: 190 NLSNLFNLNLGYNNLQ 205
            L  L  L++ +N L 
Sbjct: 98  TLPALTVLDVSFNRLT 113

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 7/113 (6%)

Query: 98  LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILSLCNN 154
           +  +DL+LN+          +L+ L+F+          I         LS L IL L  N
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRN--NTFRGLSSLIILKLDYN 89

Query: 155 SLTGLIPNSLFNLSKLEMLDAMFNVI-DGSIPSGI-RNLSNLFNLNLGYNNLQ 205
               L   +   L+ LE+L      +    +     + L++L  L L  NN++
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK 142

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSN 193
            +P  +        + L  NS+  L   S   L  L+ L          I +   R LS+
Sbjct: 27  ELPAHV------NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 194 LFNLNLGYNNLQ 205
           L  L L YN   
Sbjct: 81  LIILKLDYNQFL 92

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 11/126 (8%)

Query: 84  LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV- 142
           L  ++ SH  +L     L L  N  +    +    L  L  ++ + N L  SI +   + 
Sbjct: 290 LLKSVFSHFTDL---EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDS--RMF 343

Query: 143 --LSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNL 199
             L KL +L L  N +  L   S   L  L+ L    N +  S+P GI   L++L  + L
Sbjct: 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWL 402

Query: 200 GYNNLQ 205
             N   
Sbjct: 403 HTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 34/146 (23%), Positives = 53/146 (36%), Gaps = 15/146 (10%)

Query: 72  QRVTALNHLDMG---LGGTIPSHL-GNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISF 127
            R+  L  L +     G  I ++    L  L+ L L  N F          L  L  ++ 
Sbjct: 51  SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110

Query: 128 TFNKL-SGSIPTWIGV---LSKLRILSLCNNSLTGLIPNSLF-NLSKLEMLDAMFNVIDG 182
           T   L    +         L+ L +L L +N++  + P S F N+ +  +LD  FN +  
Sbjct: 111 TQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK- 167

Query: 183 SIPSGI---RNLSNLFNLNLGYNNLQ 205
           SI           +   L L    LQ
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQ 193

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 7e-08
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
           S L   + +  LD + N+ +            L  +    N L+      +     L  +
Sbjct: 205 STLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLT-DTAWLLN-YPGLVEV 259

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            L  N L  ++ +    + +LE L    N +  ++    + +  L  L+L +N+L 
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWI-GVLSKLR 147
                    +  L +  N       H    +  L  +    N LS S+P  I     KL 
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 150

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            LS+ NN+L  +  ++    + L+ L    N +   +      + +LF+ N+ YN L 
Sbjct: 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 143 LSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGY 201
           L+  +I++  N+++  L    L +  ++E+L+     I+  I +        +  L +G+
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 108

Query: 202 NNL 204
           N +
Sbjct: 109 NAI 111

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.9 bits (121), Expect = 8e-08
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
                L  +  +    ++    +   +  L  +  +    NKL+  I   +  L  L  L
Sbjct: 37  VTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWL 92

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            L  N +  L    L +L KL+ L    N I  S  +G+ +L  L +L LG N + 
Sbjct: 93  FLDENKIKDLSS--LKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT 144

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
             L NL  L  L L  N         L  L++L+ +S   N +S  I   +  L +L  L
Sbjct: 81  KPLTNLKNLGWLFLDENKIKD--LSSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESL 136

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
            L NN +T +    L  L+KL+ L    N I   I   +  L+ L NL L  N++
Sbjct: 137 YLGNNKITDITV--LSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHI 187

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 3e-06
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
                    +  +L   +     A    +L  +  I    + +  S+   I  L  +  L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKL 70

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            L  N LT + P  L NL  L  L    N I     S +++L  L +L+L +N + 
Sbjct: 71  FLNGNKLTDIKP--LTNLKNLGWLFLDENKI--KDLSSLKDLKKLKSLSLEHNGIS 122

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
           S L   + +  LD + N+ +            L  +    N L+      +     L  +
Sbjct: 199 STLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLT-DTAWLLN-YPGLVEV 253

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            L  N L  ++ +    + +LE L    N +  ++    + +  L  L+L +N+L 
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 5/118 (4%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWI-GVLSKLR 147
                    +  L +  N       H    +  L  +    N LS S+P  I     KL 
Sbjct: 86  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLT 144

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            LS+ NN+L  +  ++    + L+ L    N +   +      + +LF+ N+ YN L 
Sbjct: 145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS--LIPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 12/63 (19%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 143 LSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGY 201
           L+  +I++  N+++  L    L +  ++E+L+     I+  I +        +  L +G+
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGF 102

Query: 202 NNL 204
           N +
Sbjct: 103 NAI 105

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRI 148
                 +  L  L ++ N     L      +  L+ +  + N L   +        +L  
Sbjct: 265 YHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322

Query: 149 LSLCNNSLTGLIPNSLFNLSKL 170
           L L +NS+  L  ++   L  L
Sbjct: 323 LYLDHNSIVTLKLSTHHTLKNL 344

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 10/136 (7%)

Query: 75  TALNHLDMG----LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFN 130
             +N ++MG              + L L  L ++       +  +L     L  +    N
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHN 203

Query: 131 KLSGSIPTWI-GVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIR 189
           K+  +I        SKL  L L +N +  +   SL  L  L  L    N +   +P+G+ 
Sbjct: 204 KIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261

Query: 190 NLSNLFNLNLGYNNLQ 205
           +L  L  + L  NN+ 
Sbjct: 262 DLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 4/117 (3%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRI 148
                 L  L +L L  N            LR+L+ +  + N L   IP    + S L  
Sbjct: 71  KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVE 127

Query: 149 LSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVI-DGSIPSGIRNLSNLFNLNLGYNNL 204
           L + +N +  +       L  +  ++   N + +     G  +   L  L +    L
Sbjct: 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 98  LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLT 157
              LDL  N+       +   L+ L  +    NK+S         L KL+ L +  N L 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 158 GLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
             IP +L   S L  L    N I   +P G+   L N+  + +G N L+
Sbjct: 116 -EIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLE 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 98  LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLT 157
           L  L L  N        +L +  +L  +    N++       +  L  LR L L NN L+
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254

Query: 158 GLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-------RNLSNLFNLNLGYNNLQ 205
             +P  L +L  L+++    N I   +              +    ++L  N + 
Sbjct: 255 -RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 23/122 (18%), Positives = 40/122 (32%), Gaps = 9/122 (7%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRI 148
              L     L  L L  N         L  L  LR +    NKLS  +P  +  L  L++
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQV 268

Query: 149 LSLCNNSLTGLIPNS------LFNLSKLEMLDAMFNVID-GSIPSGI-RNLSNLFNLNLG 200
           + L  N++T +  N           +    +    N +    +     R +++   +  G
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

Query: 201 YN 202
             
Sbjct: 329 NY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSN 193
           ++P    +     +L L NN ++ L  +    L  L  L  + N I   I       L  
Sbjct: 47  AVPK--EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRK 103

Query: 194 LFNLNLGYNNLQ 205
           L  L +  N+L 
Sbjct: 104 LQKLYISKNHLV 115

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 5/119 (4%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRI 148
                NL  L +L L  N            L +L  +  + N+L   +P    +   L+ 
Sbjct: 69  DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPE--KMPKTLQE 125

Query: 149 LSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVI-DGSIPSGI-RNLSNLFNLNLGYNNLQ 205
           L +  N +T +  +    L+++ +++   N +    I +G  + +  L  + +   N+ 
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 119 LRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN 178
           +++L +I      ++ +IP   G+   L  L L  N +T +   SL  L+ L  L   FN
Sbjct: 170 MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 179 VIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
            I  ++ +G   N  +L  L+L  N L 
Sbjct: 227 SIS-AVDNGSLANTPHLRELHLNNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 4/112 (3%)

Query: 94  NLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN 153
            +  L  + +   N    +   L     L  +    NK++      +  L+ L  L L  
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 225

Query: 154 NSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           NS++ +   SL N   L  L    N +   +P G+ +   +  + L  NN+ 
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 9/122 (7%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRI 148
            + L  L  L  L L+ N+        L     LR +    NKL   +P  +     +++
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQV 267

Query: 149 LSLCNNSLTGLIPNS------LFNLSKLEMLDAMFNVI-DGSIPSGI-RNLSNLFNLNLG 200
           + L NN+++ +  N           +    +    N +    I     R +     + LG
Sbjct: 268 VYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLG 327

Query: 201 YN 202
             
Sbjct: 328 NY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 9/115 (7%)

Query: 98  LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLT 157
           L  L L  N      A  L  L  L  +  +FN +S      +     LR L L NN L 
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253

Query: 158 GLIPNSLFNLSKLEMLDAMFNVIDGSIPSG-------IRNLSNLFNLNLGYNNLQ 205
             +P  L +   ++++    N I  +I S            ++   ++L  N +Q
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 98  LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLT 157
              LDL  N        +   L+ L  +    NK+S   P     L KL  L L  N L 
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113

Query: 158 GLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
             +P  +     L+ L    N I   +   +   L+ +  + LG N L+
Sbjct: 114 -ELPEKMP--KTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLK 158

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSN 193
            +P    +     +L L NN +T +      NL  L  L  + N I   I  G    L  
Sbjct: 45  KVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-SKISPGAFAPLVK 101

Query: 194 LFNLNLGYNNLQ 205
           L  L L  N L+
Sbjct: 102 LERLYLSKNQLK 113

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 27/119 (22%), Positives = 42/119 (35%), Gaps = 4/119 (3%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPT-WIGVLSKLR 147
           P+    L  L +L L               L  L+++    N L  ++P      L  L 
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLT 156

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
            L L  N ++ +   +   L  L+ L    N +   +     R+L  L  L L  NNL 
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 122 LRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID 181
            + I    N++S            L IL L +N L  +   +   L+ LE LD   N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 182 GSIPSGI-RNLSNLFNLNLGYNNLQ 205
            S+       L  L  L+L    LQ
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQ 118

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 4/70 (5%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSN 193
           ++P   G+ +  + + L  N ++ +   S      L +L    NV+   I +     L+ 
Sbjct: 25  AVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLAL 81

Query: 194 LFNLNLGYNN 203
           L  L+L  N 
Sbjct: 82  LEQLDLSDNA 91

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-07
 Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 10/110 (9%)

Query: 101 LDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILSLCNNSLT 157
           + L  N             ++LR I  + N++S  +         L  L  L L  N +T
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVLYGNKIT 93

Query: 158 GLIPNSLF-NLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
            L P SLF  L  L++L    N I   +     ++L NL  L+L  N LQ
Sbjct: 94  EL-PKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQ 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 118 QLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILSLCNNSLTGLIPNSLFNLSKLEMLD 174
            LR L  +    NK++  +P    +   L  L++L L  N +  L  ++  +L  L +L 
Sbjct: 78  GLRSLNSLVLYGNKIT-ELPK--SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134

Query: 175 AMFNVIDGSIPSGI-RNLSNLFNLNLGYNN 203
              N +  +I  G    L  +  ++L   N
Sbjct: 135 LYDNKL-QTIAKGTFSPLRAIQTMHL-AQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSN 193
            IPT   +   +  + L  N++  + P +     KL  +D   N I   +     + L +
Sbjct: 25  EIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRS 81

Query: 194 LFNLNLGYNNLQ 205
           L +L L  N + 
Sbjct: 82  LNSLVLYGNKIT 93

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 25/119 (21%), Positives = 37/119 (31%), Gaps = 3/119 (2%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPT-WIGVLSKLR 147
                    L  LDL+ N     ++     L +L  + F  + L           L  L 
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
            L + +             LS LE+L    N    +    I   L NL  L+L    L+
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 22/112 (19%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 98  LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILSLCNN 154
              L+L  N           +L +L  +S + N LS             + L+ L L  N
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDLSFN 88

Query: 155 SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
            +   + ++   L +LE LD   + +       +  +L NL  L++ + + +
Sbjct: 89  GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 87  TIPSH-LGNLLFLMSLDLTLNNFHGHLAHE-LGQLRRLRFISFTFNKLSGSIPTWIGVLS 144
              +     L  L  L +  N+F  +   +   +LR L F+  +  +L    PT    LS
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199

Query: 145 KLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI--RNLSNLFNLNLGYN 202
            L++L++ +N+   L       L+ L++LD   N I  +          S+L  LNL  N
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

Query: 203 NLQ 205
           +  
Sbjct: 259 DFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.2 bits (97), Expect = 8e-05
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID-GSIPSGI-RNLS 192
           S+PT  G+ S    L L +N L  L       L++L  L    N +      S      +
Sbjct: 21  SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 193 NLFNLNLGYNNLQ 205
           +L  L+L +N + 
Sbjct: 79  SLKYLDLSFNGVI 91

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%)

Query: 100 SLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILSLCNNSL 156
           +LDL+ N      ++       L+ +  +  ++  +I    G    LS L  L L  N +
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIED--GAYQSLSHLSTLILTGNPI 88

Query: 157 TGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
             L   +   LS L+ L A+   +  S+ +    +L  L  LN+ +N +Q
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ 137

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 19/144 (13%)

Query: 75  TALNHLDMG------LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFT 128
           + L+ L +       L     S L +L     L     N        +G L+ L+ ++  
Sbjct: 76  SHLSTLILTGNPIQSLALGAFSGLSSL---QKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 129 FNKLSGSIPTWIGV---LSKLRILSLCNNSLTGLIPNSLFNLSKLEM----LDAMFNVID 181
            N +  S          L+ L  L L +N +  +    L  L ++ +    LD   N ++
Sbjct: 133 HNLIQ-SFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

Query: 182 GSIPSGIRNLSNLFNLNLGYNNLQ 205
             I  G      L  L L  N L+
Sbjct: 191 -FIQPGAFKEIRLKELALDTNQLK 213

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSN 193
            IP    +    + L L  N L  L   S F+  +L++LD     I  +I  G  ++LS+
Sbjct: 21  KIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 194 LFNLNLGYNNLQ 205
           L  L L  N +Q
Sbjct: 78  LSTLILTGNPIQ 89

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 11/111 (9%)

Query: 101 LDLTLNNFHGHLAH-ELGQLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILSLCNNSL 156
           L L  N F    A     +L +LR I+F+ NK++  I    G     S +  + L +N L
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEE--GAFEGASGVNEILLTSNRL 93

Query: 157 TGLIPNSLF-NLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
             +  + +F  L  L+ L    N I   + +     LS++  L+L  N + 
Sbjct: 94  ENV-QHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 38.5 bits (90), Expect = 6e-04
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLF-NLSKLEMLDAMFNVIDGSIPSGI-RNLS 192
            IP  I        L L NN  T L    +F  L +L  ++   N I   I  G     S
Sbjct: 25  KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81

Query: 193 NLFNLNLGYNNLQ 205
            +  + L  N L+
Sbjct: 82  GVNEILLTSNRLE 94

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.0 bits (112), Expect = 9e-07
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 10/111 (9%)

Query: 100 SLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILSLCNNSL 156
            LDL               L +L +++  +N+L  ++    GV   L++L  L L NN L
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSA--GVFDDLTELGTLGLANNQL 95

Query: 157 TGLIPNSLF-NLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
             L P  +F +L++L+ L    N +  S+PSG+   L+ L  L L  N LQ
Sbjct: 96  ASL-PLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ 144

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 118 QLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILSLCNNSLTGLIPNSLF-NLSKLEML 173
            L  L  +    N+L+ S+P   GV   L++L  L L  N L  L P+ +F  L+KL+ L
Sbjct: 81  DLTELGTLGLANNQLA-SLPL--GVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKEL 136

Query: 174 DAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
               N +  SIP+G    L+NL  L+L  N LQ
Sbjct: 137 RLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQ 168

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 11/153 (7%)

Query: 61  NWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLA------- 113
            W+          +  L+             +     L +LDL+ N   G          
Sbjct: 138 AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197

Query: 114 HELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLF-NLSKLEM 172
            +   L+ L   +      SG          +L+ L L +NSL            S+L  
Sbjct: 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257

Query: 173 LDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           L+  F  +   +P G+   + L  L+L YN L 
Sbjct: 258 LNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLD 287

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 88  IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV-LSKL 146
            P     L  L   +  +    G  +       +L+ +  + N L  +         S+L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
             L+L    L  + P  L   +KL +LD  +N +D   PS    L  + NL+L  N  
Sbjct: 256 NSLNLSFTGLKQV-PKGLP--AKLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPF 308

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 4/133 (3%)

Query: 77  LNHLDMGLGGTIPSHLGNLLFLMS-LDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGS 135
           ++ +   + G   S++  +   M+  + T++           ++     + F+ N L+ +
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDT 339

Query: 136 IPTWIGVLSKLRILSLCNNSLTGL--IPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLS 192
           +    G L++L  L L  N L  L  I      +  L+ LD   N +      G      
Sbjct: 340 VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399

Query: 193 NLFNLNLGYNNLQ 205
           +L +LN+  N L 
Sbjct: 400 SLLSLNMSSNILT 412

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)

Query: 69  LPHQRVTALNHLDMG---LGGTIPSHLGNLLFLMSLDLTLNNFH--GHLAHELGQLRRLR 123
           L   +++   HLD     L  T+  + G+L  L +L L +N       +A    Q++ L+
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377

Query: 124 FISFTFNKLSGSIPTWI-GVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG 182
            +  + N +S             L  L++ +N LT  I   L    ++++LD   N I  
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK- 434

Query: 183 SIPSGIRNLSNLFNLNLGYNNLQ 205
           SIP  +  L  L  LN+  N L+
Sbjct: 435 SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 2/105 (1%)

Query: 101 LDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLI 160
           L+++ N        ++  L +LR +  + N++     +      +L  L L +N L  + 
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85

Query: 161 PNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            +   NL  L++    F+ +   I     N+S L  L L   +L+
Sbjct: 86  CHPTVNLKHLDLSFNAFDAL--PICKEFGNMSQLKFLGLSTTHLE 128

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 6/114 (5%)

Query: 94  NLLFLMSLDLTLNNFHGHLAHEL-GQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC 152
            +  L  LD++ N+             + L  ++ + N L+ +I   +    ++++L L 
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLH 429

Query: 153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
           +N +  + P  +  L  L+ L+   N +  S+P GI   L++L  + L  N   
Sbjct: 430 SNKIKSI-PKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/110 (13%), Positives = 34/110 (30%)

Query: 96  LFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNS 155
             + ++ L          +    L+ L       +           + S + I +   + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 156 LTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
              +       +S    LD   N++  ++     +L+ L  L L  N L+
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 5e-06
 Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 3/78 (3%)

Query: 130 NKLSGSIPTWIGVLSKLRILSLC-NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
              +      +     L  L +     L  L    L  L +L  L  + + +   +    
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA 75

Query: 189 -RNLSNLFNLNLGYNNLQ 205
                 L  LNL +N L+
Sbjct: 76  FHFTPRLSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 114 HELGQLRRLRFISFTFNKLSGSIPTW-IGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEM 172
           H L     L  +     +    +    +  L +LR L++  + L  + P++     +L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 173 LDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           L+  FN ++ S+        +L  L L  N L 
Sbjct: 85  LNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 11/119 (9%)

Query: 94  NLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILS 150
            L  L SL L+ N+ +   +     +  LR++  + N L  ++     +   L  L +L 
Sbjct: 62  RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDE--FLFSDLQALEVLL 118

Query: 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI----RNLSNLFNLNLGYNNLQ 205
           L NN +  +  N+  ++++L+ L    N I    P  +      L  L  L+L  N L+
Sbjct: 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 9/110 (8%)

Query: 100 SLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILSLCNNSL 156
            L L  N            L  L+ +    N+L  ++P   GV   L++L +L L  N L
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPV--GVFDSLTQLTVLDLGTNQL 100

Query: 157 TGLIPNSLFN-LSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           T L P+++F+ L  L+ L    N +   +P GI  L++L +L L  N L+
Sbjct: 101 TVL-PSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK 148

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 12/114 (10%)

Query: 92  LGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151
           L N  FL  +D+  N+    L      L  +   +   N+L   +P  +  L  L  +  
Sbjct: 149 LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE-ELPE-LQNLPFLTAIYA 202

Query: 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            NNSL  L          LE + A  N++       ++NL  L  +    N L+
Sbjct: 203 DNNSLKKLPD----LPLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK 250

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 22/146 (15%), Positives = 41/146 (28%), Gaps = 31/146 (21%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSG------------ 134
            +P    N+          + +  +     G+ R +                        
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS-------- 186
           S+P        L  L    NSLT L P    +L  L + +     +    P         
Sbjct: 85  SLPELPP---HLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSN 140

Query: 187 -------GIRNLSNLFNLNLGYNNLQ 205
                   ++N S L  +++  N+L+
Sbjct: 141 NQLEKLPELQNSSFLKIIDVDNNSLK 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 24/123 (19%)

Query: 98  LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLT 157
              L+L        L      L  L     + N L+  +P     L  L + +    +L+
Sbjct: 73  AHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDNNNLKALS 127

Query: 158 GLIPN---------------SLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202
            L P                 L N S L+++D   N +   +P    +L     +  G N
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLE---FIAAGNN 183

Query: 203 NLQ 205
            L+
Sbjct: 184 QLE 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 8/115 (6%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
           S +  L  + +LDLT           L  L  L+ +    N+++   P  +  L+ L+ L
Sbjct: 101 SAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 156

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           S+ N  ++ L P  L NLSKL  L A  N I  S  S + +L NL  ++L  N +
Sbjct: 157 SIGNAQVSDLTP--LANLSKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 8/115 (6%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
             +  L  L+ L+L  N         L  L ++  +  + N L  ++   I  L  ++ L
Sbjct: 57  EGVQYLNNLIGLELKDNQITD--LAPLKNLTKITELELSGNPLK-NVSA-IAGLQSIKTL 112

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
            L +  +T + P  L  LS L++L    N I  +  S +  L+NL  L++G   +
Sbjct: 113 DLTSTQITDVTP--LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQV 163

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 8/114 (7%)

Query: 92  LGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL 151
              L   + +    +N           L  +  +S     ++ +I   +  L+ L  L L
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLEL 70

Query: 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            +N +T L P  L NL+K+  L+   N +     S I  L ++  L+L    + 
Sbjct: 71  KDNQITDLAP--LKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQIT 120

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
           + L  L  L  L L LN         L  L  L+++S    ++S   P  +  LSKL  L
Sbjct: 123 TPLAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
              +N ++ + P  L +L  L  +    N I  S  S + N SNLF + L    + 
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQI--SDVSPLANTSNLFIVTLTNQTIT 230

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 118 QLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILSLCNNSLTGLIPNSLF-NLSKLEML 173
           QL  L  +    N+L  S+P    V   L+KL  LSL  N L  L P  +F  L+ L+ L
Sbjct: 107 QLVNLAELRLDRNQLK-SLPP--RVFDSLTKLTYLSLGYNELQSL-PKGVFDKLTSLKEL 162

Query: 174 DAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
               N +   +P G    L+ L  L L  N L+
Sbjct: 163 RLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 143 LSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGY 201
           L+KLR+L L +N L  L       L  LE L    N +  ++P G+   L NL  L L  
Sbjct: 60  LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDR 118

Query: 202 NNLQ 205
           N L+
Sbjct: 119 NQLK 122

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSN 193
           +IP+   + +  + L L +N L+ L   +   L+KL +L    N +  ++P+GI + L N
Sbjct: 30  AIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 194 LFNLNLGYNNLQ 205
           L  L +  N LQ
Sbjct: 87  LETLWVTDNKLQ 98

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 4/137 (2%)

Query: 73  RVTALNHLDMGLGGTIPSHLGNLLFLMS-LDLTLNNFHGHLAHELGQLRRLRFISFTFNK 131
           +   + H+   +       L ++   M+   L++++                F++FT N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 132 LSGSIPTWIGVLSKLRILSLCNNSLTGL--IPNSLFNLSKLEMLDAMFNVI-DGSIPSGI 188
            + S+      L +L+ L L  N L     +     N+S LE LD   N +   +     
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424

Query: 189 RNLSNLFNLNLGYNNLQ 205
               ++  LNL  N L 
Sbjct: 425 AWAESILVLNLSSNMLT 441

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 113 AHELGQLRRLRFISFTFNKL-SGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLE 171
           A     +  L  +  + N L S +          + +L+L +N LTG +   L    K++
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVK 453

Query: 172 MLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           +LD   N I  SIP  + +L  L  LN+  N L+
Sbjct: 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 27/116 (23%), Positives = 44/116 (37%), Gaps = 8/116 (6%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
                L  +  +    ++        +  L  +  +    NKL+   P  +  L  L  L
Sbjct: 40  VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWL 95

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            L  N +  L    L +L KL+ L    N I  S  +G+ +L  L +L LG N + 
Sbjct: 96  FLDENKVKDLSS--LKDLKKLKSLSLEHNGI--SDINGLVHLPQLESLYLGNNKIT 147

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 6/89 (6%)

Query: 116 LGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDA 175
           L  L++L+ +S   N +S  I   +  L +L  L L NN +T +    L  L+KL+ L  
Sbjct: 108 LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSL 163

Query: 176 MFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
             N I  S    +  L+ L NL L  N++
Sbjct: 164 EDNQI--SDIVPLAGLTKLQNLYLSKNHI 190

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLF-NLSKLEMLDAMFNVIDGSIPSG 187
            N+ +  +P  +     L ++ L NN ++ L  N  F N+++L  L   +N +   IP  
Sbjct: 40  GNQFT-LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRL-RCIPPR 96

Query: 188 I-RNLSNLFNLNLGYNNLQ 205
               L +L  L+L  N++ 
Sbjct: 97  TFDGLKSLRLLSLHGNDIS 115

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSN 193
           SIP+  G+   ++ L L NN +T +  + L     L+ L    N I+ +I      +L +
Sbjct: 45  SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGS 101

Query: 194 LFNLNLGYNNLQ 205
           L +L+L YN L 
Sbjct: 102 LEHLDLSYNYLS 113

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 11/123 (8%)

Query: 92  LGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWI-GVLSKLRILS 150
              L FL  L++  ++   +    L  ++ +  +     +    +      V S +  L 
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE 228

Query: 151 LCNN--------SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202
           L +          L+    NSL        +      +   +   +  +S L  L    N
Sbjct: 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL-FQVMKLLNQISGLLELEFSRN 287

Query: 203 NLQ 205
            L+
Sbjct: 288 QLK 290

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 7/111 (6%)

Query: 98  LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILSLCNN 154
           + SLDL+ N        +L +   L+ +  T N ++ +I         L  L  L L  N
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEE--DSFSSLGSLEHLDLSYN 110

Query: 155 SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNL 204
            L+ L  +    LS L  L+ + N       + +  +L+ L  L +G  + 
Sbjct: 111 YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT 161

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 20/115 (17%), Positives = 35/115 (30%), Gaps = 4/115 (3%)

Query: 94  NLLFLMSLDLTLNNFHG-HLAHELGQLRRLRFISFTFNKLSGSIPT-WIGVLSKLRILSL 151
            L  L  L+L  N +           L +L+ +          I       L+ L  L +
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
             + L    P SL ++  +  L          +        S++  L L   +L 
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLD 235

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 118 QLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
           +LR     +F F++LS      +      R + + + SL   +   L  +S L  L+   
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ-VMKLLNQISGLLELEFSR 286

Query: 178 NVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
           N +  S+P GI   L++L  + L  N   
Sbjct: 287 NQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 90  SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRIL 149
           +   N +    LDL        + +    L +   I F+ N++   +  +  +L +L+ L
Sbjct: 13  AQYTNAVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIR-KLDGF-PLLRRLKTL 69

Query: 150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYN 202
            + NN +  +       L  L  L    N +        + +L +L  L +  N
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 5/105 (4%)

Query: 101 LDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLI 160
           + LT        A +     R R +     K+   I      L +   +   +N +  L 
Sbjct: 2   VKLTAELIE--QAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL- 57

Query: 161 PNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
            +    L +L+ L    N I        + L +L  L L  N+L 
Sbjct: 58  -DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 4/120 (3%)

Query: 89  PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP--TWIGVLSKL 146
           P    NL  L  L ++                +   +    N    +I   +++G+  + 
Sbjct: 97  PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156

Query: 147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSNLFNLNLGYNNLQ 205
            IL L  N +  +  ++       E+  +  N ++  +P+ +    S    L++    + 
Sbjct: 157 VILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 11/127 (8%)

Query: 87  TIPSH-LGNLLFLMSLDLTLNNFHGHLA----HELGQLRRLRFISFTFNKLSGSIPTWI- 140
            I          L  ++++ N+    +       L +L  +R      N L   I     
Sbjct: 44  VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI--EKANNLL-YINPEAF 100

Query: 141 GVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG-IRNLS-NLFNLN 198
             L  L+ L + N  +  L      +  +  +LD   N+   +I       LS     L 
Sbjct: 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160

Query: 199 LGYNNLQ 205
           L  N +Q
Sbjct: 161 LNKNGIQ 167

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI-RNLSN 193
            IP+   +      L      L  +   +      LE ++   N +   I + +  NL  
Sbjct: 23  EIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 194 LFNLNLGYNN 203
           L  + +   N
Sbjct: 81  LHEIRIEKAN 90

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 134 GSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSN 193
           G I         L  LSL N  L  +  ++L  L KL+ L+   N I G +      L N
Sbjct: 39  GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96

Query: 194 LFNLNLGYNNLQ 205
           L +LNL  N L+
Sbjct: 97  LTHLNLSGNKLK 108

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 88  IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLR 147
           + + L  L     L L+ NN    ++  L  +  LR +S   N +   I     V   L 
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK-KIENLDAVADTLE 96

Query: 148 ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVI-DGSIPSGIRNLSNLFNLNLGYN 202
            L +  N +  L  + +  L  L +L    N I +      +  L  L +L L  N
Sbjct: 97  ELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 96  LFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNS 155
              + L   +      +   L  L+  + ++ + N +   I + +  +  LRILSL  N 
Sbjct: 25  AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNL 81

Query: 156 LTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           +   I N       LE L   +N I  S+ SGI  L NL  L +  N + 
Sbjct: 82  IKK-IENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT 128

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 134 GSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSN 193
           G +        +L  LS  N  LT +   +L  L+KL+ L+   N + G +        N
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 194 LFNLNLGYNNLQ 205
           L +LNL  N ++
Sbjct: 90  LTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 6/105 (5%)

Query: 102 DLTLNNFH---GHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTG 158
           +L L+N     G L     +   L F+S     L+ SI   +  L+KL+ L L +N ++G
Sbjct: 21  ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSG 78

Query: 159 LIPNSLFNLSKLEMLDAMFNVI-DGSIPSGIRNLSNLFNLNLGYN 202
            +         L  L+   N I D S    ++ L NL +L+L   
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 11/137 (8%)

Query: 69  LPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFT 128
           L    +T L +L+          +     L  L+   N        ++    +L  +   
Sbjct: 100 LDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCH 156

Query: 129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI 188
            NK    +   +   ++L  L    N +T L    +     L  L+   N I   +   +
Sbjct: 157 LNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNIT-KLD--L 208

Query: 189 RNLSNLFNLNLGYNNLQ 205
                L  L+   N L 
Sbjct: 209 NQNIQLTFLDCSSNKLT 225

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 9/111 (8%)

Query: 100 SLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV---LSKLRILSLCNN-S 155
           +L L   +     +H    L  +  I  + +     + +       LSK+  + + N  +
Sbjct: 35  TLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES--HSFYNLSKVTHIEIRNTRN 92

Query: 156 LTGLIPNSLFNLSKLEMLDAMFNVIDGSIP--SGIRNLSNLFNLNLGYNNL 204
           LT + P++L  L  L+ L      +    P  + + +    F L +  N  
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPY 142

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 6/125 (4%)

Query: 87  TIPSH-LGNLLFLMSLDLTLNNFHGHL-AHELGQLRRLRFISFTFNKLSGSIPT-WIGVL 143
           TIPSH   NL  +  + ++++     L +H    L ++  I     +    I    +  L
Sbjct: 45  TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL 104

Query: 144 SKLRILSLCNNSLTGLIPNS-LFNLSKLEMLDAMFNVIDGSIPSGI-RNLSN-LFNLNLG 200
             L+ L + N  L      + +++     +L+   N    SIP    + L N    L L 
Sbjct: 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164

Query: 201 YNNLQ 205
            N   
Sbjct: 165 NNGFT 169

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 4/79 (5%)

Query: 129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFN-LSKLEMLDAMFNVIDGSIPSG 187
            N L          L+ L  L L  N L  L PN +FN L+ L  L+   N +  S+P+G
Sbjct: 37  TNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQ-SLPNG 94

Query: 188 I-RNLSNLFNLNLGYNNLQ 205
           +   L+ L  L L  N LQ
Sbjct: 95  VFDKLTQLKELALNTNQLQ 113

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 11/92 (11%)

Query: 116 LGQLRRLRFISFTFNKLSGSIPTWIGVLS--KLRILSLCNNSLTGLIPNSLFNLSKLEML 173
           L  L +L  +S   N+L       +  +    L  L L NN L       L +L  LE+L
Sbjct: 81  LKDLTKLEELSVNRNRLKN-----LNGIPSACLSRLFLDNNELRDTDS--LIHLKNLEIL 133

Query: 174 DAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
               N +  SI   +  LS L  L+L  N + 
Sbjct: 134 SIRNNKLK-SI-VMLGFLSKLEVLDLHGNEIT 163

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.98
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.91
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.89
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.84
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.84
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.82
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.81
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.81
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.81
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.81
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.81
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.81
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.81
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.8
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.8
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.79
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.79
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.79
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.78
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.78
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.78
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.78
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.78
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.77
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.77
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.77
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.77
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.76
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.75
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.75
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.74
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.74
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.74
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.73
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.73
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.73
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.73
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.72
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.72
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.72
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.71
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.71
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.71
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.71
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.71
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.7
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.7
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.69
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.68
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.65
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.64
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.63
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.61
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.6
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.6
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.58
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.58
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.56
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.55
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.55
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.54
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.54
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.53
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.52
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.52
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.52
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.52
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.5
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.5
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.48
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.37
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.21
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	99.12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.03
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.98
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.84
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.75
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.68
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.64
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.5
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.34
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.28
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.27
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.25
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.63
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.4
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.28
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.26
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.25
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.07
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.95

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.98  E-value=4.8e-32  Score=215.79  Aligned_cols=177  Identities=28%  Similarity=0.482  Sum_probs=164.4

Q ss_pred             CCChhhHHHHHHHHhccccCCCCcCCCCCCCCCCCc--ccceeeCCCC--CcEEEEEcCCCCccc--cCCccccCCCCCC
Q 043006           26 KNITTDQSALLAFKAHVVDYRSALANNWAMSSPICN--WIGISCGLPH--QRVTALNHLDMGLGG--TIPSHLGNLLFLM   99 (205)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~l~~L~l~~~~l~~--~~p~~l~~l~~L~   99 (205)
                      .|.++|+.||++||+.+. ++. .+.+|..+.++|.  |.||.|+...  ++|+.|+++++.+.+  .+|+.+..+++|+
T Consensus         2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~   79 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence            488999999999999996 554 6889988888998  9999998544  789999999999999  8999999999999


Q ss_pred             EEEccC-CccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccC
Q 043006          100 SLDLTL-NNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN  178 (205)
Q Consensus       100 ~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n  178 (205)
                      +|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence            999995 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccCChhhcCCC-CCCEEEccCCCC
Q 043006          179 VIDGSIPSGIRNLS-NLFNLNLGYNNL  204 (205)
Q Consensus       179 ~l~~~~p~~~~~l~-~L~~L~ls~N~l  204 (205)
                      .+++.+|..+++++ +|++|++++|.+
T Consensus       160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          160 RISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             cccCcCCHHHhhhhhcCcEEECcCCee
Confidence            99999999999998 999999999975

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=4.3e-29  Score=215.91  Aligned_cols=177  Identities=21%  Similarity=0.305  Sum_probs=156.0

Q ss_pred             CChhhHHHHHHHHhccccCCCCcC-------CCCCCCCCCCcc---cceeeCCCCCcEEEEEcCCCCccccCCccccCCC
Q 043006           27 NITTDQSALLAFKAHVVDYRSALA-------NNWAMSSPICNW---IGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLL   96 (205)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~~~~-------~~w~~~~~~c~w---~gv~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~   96 (205)
                      ...+|+.||.++|+++.++.|...       .+|+.+.++|.|   .||+|+.. ++|+.|+++++++.|.+|+.+..++
T Consensus        27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~  105 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT  105 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred             hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence            345799999999999987777643       389988999999   99999854 8999999999999999999999999


Q ss_pred             CCCEEEccCCc---------------------------------------------------------------------
Q 043006           97 FLMSLDLTLNN---------------------------------------------------------------------  107 (205)
Q Consensus        97 ~L~~L~l~~n~---------------------------------------------------------------------  107 (205)
                      +|++|++++|.                                                                     
T Consensus       106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~  185 (636)
T 4eco_A          106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD  185 (636)
T ss_dssp             TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred             cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence            99999999884                                                                     


Q ss_pred             ---------cccccccccCCCCCCcEEEcccCcCCCC-----------------CCcccc--CCCCCCEEEcccccCCCC
Q 043006          108 ---------FHGHLAHELGQLRRLRFISFTFNKLSGS-----------------IPTWIG--VLSKLRILSLCNNSLTGL  159 (205)
Q Consensus       108 ---------~~~~~p~~~~~l~~L~~L~l~~n~l~~~-----------------~p~~~~--~l~~L~~l~l~~n~l~~~  159 (205)
                               +++ +|..++.+++|++|++++|.+++.                 +|+.++  ++++|++|++++|.+.+.
T Consensus       186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~  264 (636)
T 4eco_A          186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK  264 (636)
T ss_dssp             TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred             hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence                     344 788899999999999999999975                 999988  999999999999999999


Q ss_pred             CchhccCCCCCCeeecccCc-Ccc-cCChhhcCC------CCCCEEEccCCCCC
Q 043006          160 IPNSLFNLSKLEMLDAMFNV-IDG-SIPSGIRNL------SNLFNLNLGYNNLQ  205 (205)
Q Consensus       160 ~p~~~~~l~~L~~L~ls~n~-l~~-~~p~~~~~l------~~L~~L~ls~N~l~  205 (205)
                      +|..+..+++|++|++++|+ ++| .+|..++++      ++|++|++++|.++
T Consensus       265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            99999999999999999998 888 788777665      78888888888763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=2.6e-27  Score=208.59  Aligned_cols=173  Identities=25%  Similarity=0.354  Sum_probs=132.1

Q ss_pred             CChhhHHHHHHHHhccccCCCCcCCCCCCCCCCCcccceeeCCCCCcEEEEEcCCCCcccc---CC--------------
Q 043006           27 NITTDQSALLAFKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGT---IP--------------   89 (205)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~---~p--------------   89 (205)
                      ..++|+.||++||+.+. ++. .+.+|..+.+||.|.||+|+  .++|+.|+++++.+.|.   +|              
T Consensus         9 ~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~   84 (768)
T 3rgz_A            9 SLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL   84 (768)
T ss_dssp             CHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred             CCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence            45789999999999997 666 78999988899999999998  48999999999998876   43              


Q ss_pred             ---------ccccCCCCCCEEEccCCcccccccc--ccCCCCCCcEEEcccCcCCCCCCccc-cCCCCCCEEEcccccCC
Q 043006           90 ---------SHLGNLLFLMSLDLTLNNFHGHLAH--ELGQLRRLRFISFTFNKLSGSIPTWI-GVLSKLRILSLCNNSLT  157 (205)
Q Consensus        90 ---------~~l~~l~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l~l~~n~l~  157 (205)
                               ..+..+++|++|++++|.++|.+|.  .++.+++|++|++++|.+.+..|..+ .++++|++|++++|.++
T Consensus        85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  164 (768)
T 3rgz_A           85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS  164 (768)
T ss_dssp             TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred             cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence                     4677788888888888888887877  78888888888888888877777654 67777777777777777


Q ss_pred             CCCchh---cc----------------------CCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          158 GLIPNS---LF----------------------NLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       158 ~~~p~~---~~----------------------~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +..|..   +.                      .+++|++|++++|.+++.+|. ++++++|++|++++|.+
T Consensus       165 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l  235 (768)
T 3rgz_A          165 GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL  235 (768)
T ss_dssp             EETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred             CcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence            655544   33                      445555555555555555554 66666666666666655

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=2.5e-27  Score=210.19  Aligned_cols=172  Identities=26%  Similarity=0.383  Sum_probs=145.7

Q ss_pred             CChhhHHHHHHHHhccccCCCCcCCCCCCCC-----CC--Ccc------------cceeeCCCCCcEEEEEcCCCCcccc
Q 043006           27 NITTDQSALLAFKAHVVDYRSALANNWAMSS-----PI--CNW------------IGISCGLPHQRVTALNHLDMGLGGT   87 (205)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~l~~L~l~~~~l~~~   87 (205)
                      ...+|+.||++||+++.++      +|..+.     ++  |.|            .||.|+. .++|+.|+++++++.|.
T Consensus       266 ~~~~d~~ALl~~k~~l~~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~  338 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGR  338 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEE
T ss_pred             cchHHHHHHHHHHHHcCCC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCc
Confidence            4568999999999999744      454332     44  999            9999985 48999999999999999


Q ss_pred             CCccccCCCCCCEEEc-cCCccccc-------------------------------------------------------
Q 043006           88 IPSHLGNLLFLMSLDL-TLNNFHGH-------------------------------------------------------  111 (205)
Q Consensus        88 ~p~~l~~l~~L~~L~l-~~n~~~~~-------------------------------------------------------  111 (205)
                      +|+.+.++++|++|++ ++|.++|.                                                       
T Consensus       339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~  418 (876)
T 4ecn_A          339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK  418 (876)
T ss_dssp             ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred             CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence            9999999999999999 77765443                                                       


Q ss_pred             ---------------------cccccCCCCCCcEEEcccCcCCC-----------------CCCcccc--CCCCCCEEEc
Q 043006          112 ---------------------LAHELGQLRRLRFISFTFNKLSG-----------------SIPTWIG--VLSKLRILSL  151 (205)
Q Consensus       112 ---------------------~p~~~~~l~~L~~L~l~~n~l~~-----------------~~p~~~~--~l~~L~~l~l  151 (205)
                                           +|..++.+++|++|++++|.+++                 .+|+.++  ++++|++|++
T Consensus       419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L  498 (876)
T 4ecn_A          419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL  498 (876)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred             cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence                                 78888999999999999999997                 3898887  9999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCc-Ccc-cCChhhcCCC-------CCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNV-IDG-SIPSGIRNLS-------NLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~-~~p~~~~~l~-------~L~~L~ls~N~l~  205 (205)
                      ++|.+.+.+|..+..+++|+.|++++|+ ++| .+|..+++++       +|++|++++|.++
T Consensus       499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            9999999999999999999999999998 887 6777665544       7788888777763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=6.3e-27  Score=187.41  Aligned_cols=175  Identities=22%  Similarity=0.302  Sum_probs=139.6

Q ss_pred             CCChhhHHHHHHHHhccccCCCCcCCCC----CCCCCCCcccceeeC--------CCCCcEEEEEcCCCCccccCCcccc
Q 043006           26 KNITTDQSALLAFKAHVVDYRSALANNW----AMSSPICNWIGISCG--------LPHQRVTALNHLDMGLGGTIPSHLG   93 (205)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~w~gv~c~--------~~~~~l~~L~l~~~~l~~~~p~~l~   93 (205)
                      ....+|+.+|++||..+..++......|    ....++|.|.|+.|.        ....+++.|+++++.++ .+|+.+.
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~  101 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAF  101 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGG
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhh
Confidence            4566899999999998876776667788    455689999999994        12367889999999987 7888888


Q ss_pred             CCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccC-------
Q 043006           94 NLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFN-------  166 (205)
Q Consensus        94 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~-------  166 (205)
                      .+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+..       
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            8889999999999888 78888888888888888888888 77888888888888888888777777766543       


Q ss_pred             --CCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          167 --LSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       167 --l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                        +++|++|++++|.++ .+|..++++++|++|++++|.+
T Consensus       180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l  218 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL  218 (328)
T ss_dssp             EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred             ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence              777777777777776 6777677777777777777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.91  E-value=2.3e-23  Score=158.60  Aligned_cols=155  Identities=21%  Similarity=0.193  Sum_probs=134.7

Q ss_pred             CCCCCCCCCCCcccceeeCCCC---------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCC
Q 043006           50 ANNWAMSSPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLR  120 (205)
Q Consensus        50 ~~~w~~~~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~  120 (205)
                      ...|......|+|.+|.|....         ..++.|++++|.+.+..|..+..+++|++|++++|.++...+..|..++
T Consensus         9 ~~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~   88 (229)
T 3e6j_A            9 HSAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLT   88 (229)
T ss_dssp             --CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCC
Confidence            3456667789999999997422         5689999999999988888999999999999999999855556678999


Q ss_pred             CCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEcc
Q 043006          121 RLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLG  200 (205)
Q Consensus       121 ~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls  200 (205)
                      +|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus        89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  167 (229)
T 3e6j_A           89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF  167 (229)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            9999999999999655666889999999999999999 789899999999999999999995555668899999999999


Q ss_pred             CCCCC
Q 043006          201 YNNLQ  205 (205)
Q Consensus       201 ~N~l~  205 (205)
                      +|+++
T Consensus       168 ~N~~~  172 (229)
T 3e6j_A          168 GNPWD  172 (229)
T ss_dssp             TSCBC
T ss_pred             CCCcc
Confidence            99864

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.89  E-value=1.6e-22  Score=153.06  Aligned_cols=149  Identities=17%  Similarity=0.190  Sum_probs=131.3

Q ss_pred             CCCCCcccceeeCCCC---------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEE
Q 043006           56 SSPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS  126 (205)
Q Consensus        56 ~~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  126 (205)
                      ....|.|..+.|....         ..++.|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|+
T Consensus         7 ~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~   86 (220)
T 2v9t_B            7 AACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV   86 (220)
T ss_dssp             TTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEE
T ss_pred             CCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEE
Confidence            3455788888886422         4689999999999977777899999999999999999987799999999999999


Q ss_pred             cccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       127 l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +++|.++...+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus        87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           87 LYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            999999944445578999999999999999988889999999999999999999966666789999999999999986

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.89  E-value=2.6e-22  Score=150.34  Aligned_cols=149  Identities=19%  Similarity=0.176  Sum_probs=127.8

Q ss_pred             CCCCcccceeeCCCC---------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEc
Q 043006           57 SPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISF  127 (205)
Q Consensus        57 ~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  127 (205)
                      ...|.|.++.|....         .+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus         4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A            4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence            456789999996422         46899999999999766667889999999999999999655556789999999999


Q ss_pred             ccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       128 ~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|+++
T Consensus        84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            999999555566889999999999999999776677889999999999999999555556889999999999999763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.89  E-value=2e-22  Score=152.54  Aligned_cols=148  Identities=20%  Similarity=0.188  Sum_probs=130.9

Q ss_pred             CCCCcccceeeCCCC---------CcEEEEEcCCCCccccCC-ccccCCCCCCEEEccCCccccccccccCCCCCCcEEE
Q 043006           57 SPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIP-SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS  126 (205)
Q Consensus        57 ~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  126 (205)
                      ...|.|..+.|....         ..++.|++++|.+++..| ..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus         8 ~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   87 (220)
T 2v70_A            8 KCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEIL   87 (220)
T ss_dssp             TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEE
Confidence            345678888886421         357899999999997755 4578999999999999999977777899999999999


Q ss_pred             cccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       127 l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|++
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            999999977777799999999999999999988899999999999999999999977788999999999999999986

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.88  E-value=6.6e-22  Score=152.38  Aligned_cols=132  Identities=21%  Similarity=0.168  Sum_probs=63.9

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      +++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        60 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  139 (251)
T 3m19_A           60 KLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN  139 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             cCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECc
Confidence            34444444444444334444444444444444444443333334444555555555555543222334445555555555


Q ss_pred             cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus       140 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            5555544333455555555555555555533333455555555555555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=1.2e-21  Score=172.60  Aligned_cols=133  Identities=34%  Similarity=0.564  Sum_probs=108.5

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccccc-----------------------------------
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHEL-----------------------------------  116 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~-----------------------------------  116 (205)
                      .+++.|++++|.+.|.+|..+..+++|++|++++|.++|.+|..+                                   
T Consensus       514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (768)
T 3rgz_A          514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL  593 (768)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence            457777777777777777777777778888887777776665432                                   


Q ss_pred             -----------------------------------CCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCc
Q 043006          117 -----------------------------------GQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIP  161 (205)
Q Consensus       117 -----------------------------------~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p  161 (205)
                                                         ..+++|++|++++|+++|.+|..++.+++|+.|++++|+++|.+|
T Consensus       594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip  673 (768)
T 3rgz_A          594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP  673 (768)
T ss_dssp             EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence                                               234667888888888888888888888889999999999988888


Q ss_pred             hhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          162 NSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       162 ~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ..++.+++|+.||+++|+++|.+|..++++++|++||+++|++
T Consensus       674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            8888888999999999999888898888888899999998875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=6.2e-21  Score=148.43  Aligned_cols=132  Identities=25%  Similarity=0.187  Sum_probs=80.0

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      .++.|++++|.+.+..+..+..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            46777888877775555567777777777777777764333345666777777777777664333445566666666666


Q ss_pred             cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence            6666655445555555555555555555532222344555555555555543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.6e-20  Score=143.44  Aligned_cols=134  Identities=25%  Similarity=0.242  Sum_probs=121.5

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            56899999999999888888999999999999999999877778999999999999999999666677899999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|+++
T Consensus       115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            999999776677889999999999999999555557899999999999999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.84  E-value=1.8e-20  Score=160.68  Aligned_cols=134  Identities=22%  Similarity=0.166  Sum_probs=121.1

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|++++..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            46899999999999777788999999999999999999766778999999999999999999555567999999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|++++..+..|+.+++|++|++++|.+++ .+|..++.+++|++|++++|+|+
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            9999997766779999999999999999974 46788899999999999999874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.84  E-value=1.8e-20  Score=155.39  Aligned_cols=149  Identities=19%  Similarity=0.231  Sum_probs=128.2

Q ss_pred             CCCCcccc--eeeCCCC--------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccc-ccccCCCCCCcEE
Q 043006           57 SPICNWIG--ISCGLPH--------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHL-AHELGQLRRLRFI  125 (205)
Q Consensus        57 ~~~c~w~g--v~c~~~~--------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L  125 (205)
                      ...|.|.+  +.|....        .++++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..|..+++|++|
T Consensus         5 ~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L   84 (455)
T 3v47_A            5 TSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL   84 (455)
T ss_dssp             --CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred             cceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEE
Confidence            34555555  6665322        57999999999999888999999999999999999997666 5568999999999


Q ss_pred             EcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchh--ccCCCCCCeeecccCcCcccCChh-hcCCCCCCEEEccCC
Q 043006          126 SFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNS--LFNLSKLEMLDAMFNVIDGSIPSG-IRNLSNLFNLNLGYN  202 (205)
Q Consensus       126 ~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~--~~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~ls~N  202 (205)
                      ++++|.+++..|..+.++++|++|++++|.+++.+|..  +..+++|++|++++|.+++..|.. ++++++|++|++++|
T Consensus        85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A           85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence            99999999778999999999999999999999866655  889999999999999999777876 789999999999999


Q ss_pred             CCC
Q 043006          203 NLQ  205 (205)
Q Consensus       203 ~l~  205 (205)
                      .++
T Consensus       165 ~l~  167 (455)
T 3v47_A          165 KVK  167 (455)
T ss_dssp             CBS
T ss_pred             ccc
Confidence            863

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.84  E-value=4.1e-21  Score=152.61  Aligned_cols=132  Identities=30%  Similarity=0.407  Sum_probs=99.4

Q ss_pred             CcEEEEEcCC-CCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLD-MGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~-~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      ..++.|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            5677888884 778777888888888888888888888777777777788888888888888777777777788888888


Q ss_pred             cccccCCCCCchhccCCC-CCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          151 LCNNSLTGLIPNSLFNLS-KLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~-~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +++|.+++.+|..+..++ +|++|++++|.+++.+|..++.++ |++|++++|.+
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l  209 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML  209 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence            888887777777777776 777777777777766666665554 66666655543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=7.7e-20  Score=142.41  Aligned_cols=133  Identities=20%  Similarity=0.160  Sum_probs=108.4

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A           85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence            67888888888888666666788888888888888888666666788888888888888888555566788888888999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|++++..+..+..+++|++|++++|.+++..|..++++++|++|++++|++
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            88888877666678888899999999988866666678888899999988875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.83  E-value=3.1e-20  Score=137.62  Aligned_cols=128  Identities=24%  Similarity=0.316  Sum_probs=106.9

Q ss_pred             EEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccc-ccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 043006           75 TALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAH-ELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN  153 (205)
Q Consensus        75 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~  153 (205)
                      +.+++++++++ .+|..+..  .+++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            35667777774 67766544  889999999999855443 378899999999999999977788899999999999999


Q ss_pred             ccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          154 NSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       154 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      |++++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            9999877777888999999999999999888888889999999999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=8.7e-20  Score=156.40  Aligned_cols=134  Identities=22%  Similarity=0.213  Sum_probs=123.5

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+++..+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+.++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            67999999999999888889999999999999999999777888999999999999999999777999999999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++..|..+..+++|++|++++|.+.+ .+|..++++++|++|++++|.++
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            9999997777889999999999999999985 67999999999999999999874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=6.6e-20  Score=148.35  Aligned_cols=148  Identities=22%  Similarity=0.249  Sum_probs=125.5

Q ss_pred             CCCCcccceeeCCCC---------CcEEEEEcCCCCccccCCcccc-CCCCCCEEEccCCccccccccccCCCCCCcEEE
Q 043006           57 SPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLG-NLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS  126 (205)
Q Consensus        57 ~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  126 (205)
                      ...|.+..+.|....         ..++.|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|+
T Consensus        15 ~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~   94 (361)
T 2xot_A           15 NCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD   94 (361)
T ss_dssp             TCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence            345667777775321         4578999999999977777777 899999999999999977677899999999999


Q ss_pred             cccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhh----cCCCCCCEEEccCC
Q 043006          127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI----RNLSNLFNLNLGYN  202 (205)
Q Consensus       127 l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~----~~l~~L~~L~ls~N  202 (205)
                      +++|.+++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|.++ .+|..+    ..+++|+.|++++|
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSS
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCC
Confidence            9999999666667899999999999999999887888999999999999999998 567654    57899999999999


Q ss_pred             CCC
Q 043006          203 NLQ  205 (205)
Q Consensus       203 ~l~  205 (205)
                      +|+
T Consensus       174 ~l~  176 (361)
T 2xot_A          174 KLK  176 (361)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.83  E-value=2.4e-20  Score=150.30  Aligned_cols=133  Identities=23%  Similarity=0.244  Sum_probs=90.5

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            36777888888777655556777778888888888777655666777777777777777777333333677777777777


Q ss_pred             ccccCCCCCc-hhccCCCCCCeeecccCc-CcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIP-NSLFNLSKLEMLDAMFNV-IDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p-~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|++++..+ ..+..+++|++|++++|. +.+..|..++++++|++|++++|.+
T Consensus       132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            7777773322 256667777777777763 4433445566666677777766654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.82  E-value=2e-19  Score=140.79  Aligned_cols=133  Identities=24%  Similarity=0.186  Sum_probs=74.2

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCc-cccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNN-FHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      .+++.|++++|.+++..|..+..+++|++|++++|. ++...|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  135 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE
Confidence            345555555555555445555555555555555554 4433344555555666666666655544455555566666666


Q ss_pred             cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus       136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence            666666544444455566666666666666533333455566666666666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.82  E-value=4.1e-20  Score=156.67  Aligned_cols=146  Identities=21%  Similarity=0.202  Sum_probs=122.7

Q ss_pred             CCcccceeeCCC-----------CCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEc
Q 043006           59 ICNWIGISCGLP-----------HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISF  127 (205)
Q Consensus        59 ~c~w~gv~c~~~-----------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  127 (205)
                      .|.|.|+ |+..           ...+++|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            4777776 6422           147899999999999888888999999999999999999777788999999999999


Q ss_pred             ccCcCCCCCCccccCCCCCCEEEcccccCCC-CCchhccCCCCCCeeecccCcCcccCC-hhhcCCCCCCEEEccCCCCC
Q 043006          128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTG-LIPNSLFNLSKLEMLDAMFNVIDGSIP-SGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       128 ~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++..|..++.+++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.+| ..++++++|++|++++|.++
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            9999996666679999999999999999986 456778889999999999998555665 46888888999999888763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=5.7e-20  Score=146.95  Aligned_cols=130  Identities=20%  Similarity=0.139  Sum_probs=67.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccc--------------------------------cCCC
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHE--------------------------------LGQL  119 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~--------------------------------~~~l  119 (205)
                      .+++.|++++|.+. .+|..+..+++|++|++++|++.+.+|..                                +..+
T Consensus       127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l  205 (328)
T 4fcg_A          127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL  205 (328)
T ss_dssp             TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGC
T ss_pred             CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCC
Confidence            45566666666665 55555555556666666555544444443                                3444


Q ss_pred             CCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEc
Q 043006          120 RRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNL  199 (205)
Q Consensus       120 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l  199 (205)
                      ++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..++++++|++|++
T Consensus       206 ~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L  284 (328)
T 4fcg_A          206 QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL  284 (328)
T ss_dssp             TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred             CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence            44444444444444 33434444444555555554444444544555555555555555555455555555555555555


Q ss_pred             cCCC
Q 043006          200 GYNN  203 (205)
Q Consensus       200 s~N~  203 (205)
                      ++|+
T Consensus       285 ~~n~  288 (328)
T 4fcg_A          285 RGCV  288 (328)
T ss_dssp             TTCT
T ss_pred             CCCC
Confidence            5544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.81  E-value=1.1e-19  Score=131.58  Aligned_cols=131  Identities=21%  Similarity=0.162  Sum_probs=116.9

Q ss_pred             CcEEEEEcCCCCcc-ccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLG-GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~-~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      .+++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            67999999999998 78898899999999999999999854  6789999999999999999977888888899999999


Q ss_pred             cccccCCCCC-chhccCCCCCCeeecccCcCcccCC---hhhcCCCCCCEEEccCCCC
Q 043006          151 LCNNSLTGLI-PNSLFNLSKLEMLDAMFNVIDGSIP---SGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       151 l~~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~p---~~~~~l~~L~~L~ls~N~l  204 (205)
                      +++|.+++.. +..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            9999999642 2788999999999999999994433   3789999999999999976

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.81  E-value=4.7e-19  Score=137.97  Aligned_cols=132  Identities=26%  Similarity=0.227  Sum_probs=118.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+.+ + +.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        63 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           63 PNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             TTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence            689999999999986 3 47899999999999999999766777899999999999999999666677899999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++..|..+..+++|++|++++|.+++..+..++.+++|++|++++|.++
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            999999777777889999999999999999666666889999999999999874

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.81  E-value=3.5e-19  Score=138.77  Aligned_cols=134  Identities=22%  Similarity=0.166  Sum_probs=103.1

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            45788888888887666667788888888888888887655666777888888888888887666677778888888888


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++..+..+..+++|++|++++|.+++ .+|..++++++|++|++++|+++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            8888876655567778888888888888874 35777888888888888888763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=1.3e-19  Score=155.54  Aligned_cols=161  Identities=14%  Similarity=0.090  Sum_probs=114.1

Q ss_pred             CCCCcCCCCCCCCCCCc----ccceeeCC----------------CCCcEEEEEcCCCCccccCCccccCCCCCCEEEcc
Q 043006           45 YRSALANNWAMSSPICN----WIGISCGL----------------PHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLT  104 (205)
Q Consensus        45 ~~~~~~~~w~~~~~~c~----w~gv~c~~----------------~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~  104 (205)
                      +.+..+..|.++.+||.    |.++.|+.                ....++.++++++.+....+..+..+++|++|+++
T Consensus         4 ~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~   83 (597)
T 3oja_B            4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN   83 (597)
T ss_dssp             -------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECT
T ss_pred             cccccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC
Confidence            44445677877666653    55544431                00345677888887765444446778888888888


Q ss_pred             CCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccC
Q 043006          105 LNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSI  184 (205)
Q Consensus       105 ~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~  184 (205)
                      +|.+++..|..|..+++|++|++++|.+++..|..++.+++|++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus        84 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~  163 (597)
T 3oja_B           84 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE  163 (597)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             CCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC
Confidence            88888766667888888888888888888666667788888888888888888554555678888888888888888767


Q ss_pred             ChhhcCCCCCCEEEccCCCCC
Q 043006          185 PSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       185 p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      |..++++++|++|++++|.++
T Consensus       164 ~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          164 DDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             TTTTTTCTTCCEEECTTSCCS
T ss_pred             hhhhhcCCcCcEEECcCCCCC
Confidence            777888888888888888763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.81  E-value=2.2e-19  Score=148.86  Aligned_cols=134  Identities=19%  Similarity=0.149  Sum_probs=123.8

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.+++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            57899999999999999999999999999999999999888889999999999999999999777888999999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence            999999888999999999999999999999554556789999999999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.81  E-value=4.6e-19  Score=138.71  Aligned_cols=133  Identities=23%  Similarity=0.200  Sum_probs=65.5

Q ss_pred             CcEEEEEcCCCC-ccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMG-LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~-l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      ..++.|++++|. +.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        80 ~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  159 (285)
T 1ozn_A           80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF  159 (285)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEE
Confidence            345555555554 4433344455555555555555555544444455555555555555555533333344555555555


Q ss_pred             cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +++|.+++..+..+..+++|+.|++++|.+++..|..++++++|+.|++++|.+
T Consensus       160 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence            555555533333344445555555555554444444444444444444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.81  E-value=2.9e-19  Score=149.25  Aligned_cols=133  Identities=20%  Similarity=0.125  Sum_probs=103.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            46778888888888777778888888888888888888766777888888888888888887443445777888888888


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|.+++..|..+..+++|++|++++|.+.+..|..+.++++|+.|++++|.+
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  164 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL  164 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred             CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence            88888877777777778888888888877766666677777777777777765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=6.6e-19  Score=133.17  Aligned_cols=128  Identities=26%  Similarity=0.257  Sum_probs=114.4

Q ss_pred             EEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccc
Q 043006           75 TALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN  154 (205)
Q Consensus        75 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n  154 (205)
                      +.+++++++++ .+|..+.  +.+++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            46789999987 6777665  68999999999999766678999999999999999999777899999999999999999


Q ss_pred             cCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          155 SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       155 ~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      .+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|+|+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  141 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ  141 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC
Confidence            999665566789999999999999999777888999999999999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.80  E-value=1e-19  Score=129.20  Aligned_cols=128  Identities=19%  Similarity=0.153  Sum_probs=114.4

Q ss_pred             CcEEEEEcCCCCcc-ccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLG-GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~-~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      .+++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            57899999999998 78999899999999999999999865  6788999999999999999977888888899999999


Q ss_pred             cccccCCCC-CchhccCCCCCCeeecccCcCcccCC---hhhcCCCCCCEEEccC
Q 043006          151 LCNNSLTGL-IPNSLFNLSKLEMLDAMFNVIDGSIP---SGIRNLSNLFNLNLGY  201 (205)
Q Consensus       151 l~~n~l~~~-~p~~~~~l~~L~~L~ls~n~l~~~~p---~~~~~l~~L~~L~ls~  201 (205)
                      +++|.+++. .|..+..+++|++|++++|.+++..+   ..++.+++|+.|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            999999963 34789999999999999999995544   4688999999999874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.80  E-value=9.5e-19  Score=136.03  Aligned_cols=132  Identities=22%  Similarity=0.230  Sum_probs=67.3

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      .++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus        86 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  165 (270)
T 2o6q_A           86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLY  165 (270)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence            34445555554443333334445555555555555554334444555555555555555553222334555555555555


Q ss_pred             cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            5555544444455555566666666655532233355555666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.80  E-value=3.8e-19  Score=140.41  Aligned_cols=133  Identities=24%  Similarity=0.285  Sum_probs=108.2

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccc-ccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG-HLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      .+++.|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  205 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  205 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence            567788888888877777778888888888888888875 4677788888888888888888866677888888888888


Q ss_pred             cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCC-CCCEEEccCCCC
Q 043006          151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLS-NLFNLNLGYNNL  204 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~-~L~~L~ls~N~l  204 (205)
                      +++|.+++..+..+..+++|++|++++|.+++..|..+..++ +|++|++++|++
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            888888876666778888888888888888877787787774 888888888875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.80  E-value=8.5e-19  Score=130.03  Aligned_cols=125  Identities=25%  Similarity=0.302  Sum_probs=108.2

Q ss_pred             EEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccccc
Q 043006           76 ALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNS  155 (205)
Q Consensus        76 ~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~  155 (205)
                      .+++++++++ .+|..+.  +.+++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus        14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            5677777776 5676554  58999999999998 788889999999999999999997667789999999999999999


Q ss_pred             CCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          156 LTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       156 l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +++..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            9988788899999999999999999944444688999999999999976

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=9.1e-19  Score=133.15  Aligned_cols=135  Identities=24%  Similarity=0.231  Sum_probs=117.3

Q ss_pred             ccceeeCCCCCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcccc
Q 043006           62 WIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIG  141 (205)
Q Consensus        62 w~gv~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~  141 (205)
                      |..-.|.     .+.++.+++.++ .+|..+.  +.|++|++++|.+++..|..+..+++|++|++++|.++...+..+.
T Consensus        14 ~~~~~Cs-----~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~   85 (229)
T 3e6j_A           14 PSQCSCS-----GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD   85 (229)
T ss_dssp             CTTCEEE-----TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCEEe-----CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence            3445564     246889998886 6777654  7899999999999988788899999999999999999844446679


Q ss_pred             CCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          142 VLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       142 ~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      .+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+.++++|++|++++|+|+
T Consensus        86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred             cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence            9999999999999999776777889999999999999999 89999999999999999999874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.80  E-value=6.2e-20  Score=160.73  Aligned_cols=173  Identities=20%  Similarity=0.210  Sum_probs=118.9

Q ss_pred             CChhhHHHHHHHHhccccCCCCcCCCCCCC-CCCCcccceeeCCCCCcEEEEEc------------------CCCCccc-
Q 043006           27 NITTDQSALLAFKAHVVDYRSALANNWAMS-SPICNWIGISCGLPHQRVTALNH------------------LDMGLGG-   86 (205)
Q Consensus        27 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~-~~~c~w~gv~c~~~~~~l~~L~l------------------~~~~l~~-   86 (205)
                      ..+.++.++.+++....+..+.....|... ...+.|.++.+..  ++++.+++                  +.+.+.+ 
T Consensus       129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~  206 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQHKKLSQYSIDED  206 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhhcCccCcccccCc
Confidence            456778899999988876666666667433 3456787766543  33333333                  3333332 


Q ss_pred             --------cCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCC
Q 043006           87 --------TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTG  158 (205)
Q Consensus        87 --------~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~  158 (205)
                              ..|..+..++.|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|+|++|.++ 
T Consensus       207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-  283 (727)
T 4b8c_D          207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-  283 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred             cccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence                    23566888999999999999998 78888889999999999999999 99999999999999999999999 


Q ss_pred             CCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          159 LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       159 ~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      .+|..++.+++|++|++++|.++ .+|..++++++|++|+|++|.|+
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCC
T ss_pred             ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccC
Confidence            78999999999999999999997 89999999999999999999875

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=2.7e-18  Score=135.03  Aligned_cols=131  Identities=27%  Similarity=0.201  Sum_probs=81.8

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+. .+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus        77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (290)
T ss_dssp             TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence            45566666666665 45555666666666666666666444455666666666666666666443444566666666666


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|++++..+..+..+++|++|++++|.++ .+|..+....+|+.+++++|++
T Consensus       156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            666666443344556666666666666666 6666666666666677766654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.79  E-value=8.4e-19  Score=150.28  Aligned_cols=134  Identities=19%  Similarity=0.055  Sum_probs=111.5

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+++..|..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            56889999999998877888999999999999999988777888889999999999999988777888888999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  166 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH  166 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc
Confidence            999888765677888888888888888888533233445888888888888763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.79  E-value=7.2e-19  Score=146.11  Aligned_cols=133  Identities=24%  Similarity=0.161  Sum_probs=102.9

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+++..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            57899999999999888889999999999999999999777788999999999999999999555566888999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCCh-hhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|.+++..+..+..+++|++|++++|+..+.+|. .+..+++|++|++++|.+
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence            99998865555666666666666666333334443 355555555555555544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=1.3e-18  Score=136.83  Aligned_cols=130  Identities=31%  Similarity=0.304  Sum_probs=91.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+++. +.. ..+++|++|++++|.++ .+|..+..+++|++|++++|++++..|..+..+++|++|++
T Consensus        55 ~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L  131 (290)
T 1p9a_G           55 TRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL  131 (290)
T ss_dssp             TTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence            4556666666665532 221 55666667777777666 56666777778888888888887555566778888888888


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCCh-hhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|++++..+..|..+++|+.|++++|+++ .+|. .+.++++|++|++++|+|+
T Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC
Confidence            888888665566677888888888888887 4444 4567888888888888764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.79  E-value=1.6e-18  Score=143.49  Aligned_cols=133  Identities=24%  Similarity=0.162  Sum_probs=97.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.++...+..+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            45788999999998777788888999999999999988766777888889999999999888444456888888888888


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCCh-hhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|.+++..+..+..+++|++|++++|+..+.++. .+.++++|++|++++|.+
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence            88888855555566666666666666433323333 355555555555555544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.78  E-value=8.1e-19  Score=129.95  Aligned_cols=129  Identities=21%  Similarity=0.252  Sum_probs=113.0

Q ss_pred             CCCCcccceeeCCCC---------CcEEEEEcCCCCccccCCc-cccCCCCCCEEEccCCccccccccccCCCCCCcEEE
Q 043006           57 SPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPS-HLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS  126 (205)
Q Consensus        57 ~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~-~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  126 (205)
                      ...|.|..+.|....         ..++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..|..+++|++|+
T Consensus         5 ~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   84 (192)
T 1w8a_A            5 MCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             TSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence            345678888886421         4789999999999866554 488999999999999999988899999999999999


Q ss_pred             cccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCC
Q 043006          127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP  185 (205)
Q Consensus       127 l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p  185 (205)
                      +++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+
T Consensus        85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99999997777889999999999999999999889999999999999999999886544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.78  E-value=4.9e-18  Score=123.92  Aligned_cols=132  Identities=23%  Similarity=0.251  Sum_probs=90.8

Q ss_pred             CCCcccceeeCCCCCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCC
Q 043006           58 PICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP  137 (205)
Q Consensus        58 ~~c~w~gv~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p  137 (205)
                      ..|.|.++.|..            ++++ .+|..+.  +.+++|++++|.+++..+..+..+++|++|++++|.+++..+
T Consensus         5 C~C~~~~l~~~~------------~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~   69 (177)
T 2o6r_A            5 CSCSGTEIRCNS------------KGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD   69 (177)
T ss_dssp             CEEETTEEECCS------------SCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred             CEeCCCEEEecC------------CCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh
Confidence            446777777653            3333 3343332  477888888888775555556777888888888888874444


Q ss_pred             ccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          138 TWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       138 ~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus        70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCe
Confidence            5567788888888888888866556667778888888888888743333456778888888888875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=9.4e-19  Score=133.63  Aligned_cols=132  Identities=17%  Similarity=0.223  Sum_probs=110.1

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCc-cccccccccCCCCCCcEEEccc-CcCCCCCCccccCCCCCCEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNN-FHGHLAHELGQLRRLRFISFTF-NKLSGSIPTWIGVLSKLRIL  149 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~l  149 (205)
                      ..++.|++++|.+++..+..+..+++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..+..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            478999999999997767788899999999999997 8755555788999999999998 99985555778899999999


Q ss_pred             EcccccCCCCCchhccCCCCCC---eeecccC-cCcccCChhhcCCCCCC-EEEccCCCCC
Q 043006          150 SLCNNSLTGLIPNSLFNLSKLE---MLDAMFN-VIDGSIPSGIRNLSNLF-NLNLGYNNLQ  205 (205)
Q Consensus       150 ~l~~n~l~~~~p~~~~~l~~L~---~L~ls~n-~l~~~~p~~~~~l~~L~-~L~ls~N~l~  205 (205)
                      ++++|.+++ +|. +..+++|+   +|++++| .+++..+..+.++++|+ +|++++|.++
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            999999985 666 77888887   9999999 88744445688888898 8999888764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=3.2e-18  Score=129.37  Aligned_cols=128  Identities=24%  Similarity=0.217  Sum_probs=113.6

Q ss_pred             EEEEcCCCCccccCCccccCCCCCCEEEccCCccccccc-cccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 043006           75 TALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLA-HELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN  153 (205)
Q Consensus        75 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~  153 (205)
                      +.++++++.++ .+|..+..  .+++|++++|.+++..| ..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus        14 ~~l~~s~n~l~-~iP~~~~~--~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCCT--TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcc-cCccCCCC--CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            37899999997 57776643  57899999999996644 3478999999999999999976677899999999999999


Q ss_pred             ccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          154 NSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       154 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      |.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|+|+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  142 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT  142 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCC
Confidence            9999888888999999999999999999777888999999999999999874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.78  E-value=1.2e-18  Score=137.54  Aligned_cols=133  Identities=20%  Similarity=0.225  Sum_probs=84.1

Q ss_pred             CcEEEEEcCCCCccccCC-ccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCC-CCCccccCCCCCCEE
Q 043006           72 QRVTALNHLDMGLGGTIP-SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSG-SIPTWIGVLSKLRIL  149 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~l  149 (205)
                      .+++.|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++ ..|..+..+++|++|
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence            344555555555543322 345556666666666666665555556666666666666666654 356666667777777


Q ss_pred             EcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          150 SLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       150 ~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus       181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            7777777766566666777777777777777644444566677777777777765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.78  E-value=9.4e-19  Score=142.66  Aligned_cols=134  Identities=17%  Similarity=0.143  Sum_probs=97.6

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.++++++.++..-+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            45667777777776433333567778888888888887655667777888888888888887666666778888888888


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.++...+..+..+++|++|++++|.+++..|..++++++|++|++++|.++
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  178 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  178 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence            888887443344577788888888888887655666777888888888887653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.78  E-value=5.3e-18  Score=135.27  Aligned_cols=146  Identities=16%  Similarity=0.198  Sum_probs=121.4

Q ss_pred             CCCCcccceeeCCC---------CCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEc
Q 043006           57 SPICNWIGISCGLP---------HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISF  127 (205)
Q Consensus        57 ~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  127 (205)
                      ...|.|..+.|...         ...++.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            34568888888632         156889999999999777778999999999999999999777889999999999999


Q ss_pred             ccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCc--ccCChhhcCCCCCCEEEccCCCCC
Q 043006          128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID--GSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       128 ~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|++|++++|.+.  +..+..+.++++|++|++++|.++
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            999998 7776554  78999999999998777777888889999999988885  356677788888888888887653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.78  E-value=1.5e-18  Score=154.35  Aligned_cols=144  Identities=19%  Similarity=0.119  Sum_probs=125.1

Q ss_pred             CcccceeeCCCCCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccc-ccccCCCCCCcEEEcccCcCCCCCCc
Q 043006           60 CNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHL-AHELGQLRRLRFISFTFNKLSGSIPT  138 (205)
Q Consensus        60 c~w~gv~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~  138 (205)
                      |.|..|.+  ...+++.|++++|.+++..|..+..+++|++|++++|...+.+ |..|..+++|++|++++|.+++..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            45666665  2378999999999999888999999999999999999766666 77899999999999999999988899


Q ss_pred             cccCCCCCCEEEcccccCCCCCchh--ccCCCCCCeeecccCcCcccCC-hhhcCCCCCCEEEccCCCCC
Q 043006          139 WIGVLSKLRILSLCNNSLTGLIPNS--LFNLSKLEMLDAMFNVIDGSIP-SGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       139 ~~~~l~~L~~l~l~~n~l~~~~p~~--~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~  205 (205)
                      .+.++++|++|++++|.+++.+|..  +..+++|++|++++|.+++..| ..++++++|++|++++|.++
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            9999999999999999999877765  8899999999999999986654 57899999999999999863

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.77  E-value=3.2e-18  Score=145.47  Aligned_cols=134  Identities=22%  Similarity=0.166  Sum_probs=109.5

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            46888888888888777778888888888888888888666677888888888888888888666677888888888888


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG-SIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++..+..+..+++|++|++++|.+++ .+|..++++++|++|++++|.++
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence            8888886544467888888888888888875 46888888888888888888763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.77  E-value=1.8e-18  Score=150.09  Aligned_cols=133  Identities=23%  Similarity=0.215  Sum_probs=102.4

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .++++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            56788888888887666667888888888888888887766777777888888888888887333345778888888888


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|.+++..|..+..+++|++|++++|.+++..|..++++++|++|++++|.+
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence            88888766666777888888888888888766677777788888888887765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=2e-18  Score=128.22  Aligned_cols=127  Identities=20%  Similarity=0.240  Sum_probs=101.1

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+.  .++.+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            56888888888654  3346788888888888888888767778888888888888888888777788888888888888


Q ss_pred             cccc-CCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNS-LTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~-l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|. ++ .+| .+..+++|++|++++|.++ .++ .+.++++|++|++++|+|
T Consensus       144 ~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~-~~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          144 SYNGAIT-DIM-PLKTLPELKSLNIQFDGVH-DYR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CSCTBCC-CCG-GGGGCSSCCEEECTTBCCC-CCT-TGGGCSSCCEEEECBC--
T ss_pred             cCCCCcc-ccH-hhcCCCCCCEEECCCCCCc-ChH-HhccCCCCCEEEeeCccc
Confidence            8887 55 555 5788888888888888887 455 578888888999888876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.77  E-value=2.9e-18  Score=125.15  Aligned_cols=114  Identities=22%  Similarity=0.180  Sum_probs=99.8

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            57899999999999766667889999999999999999655666789999999999999999665666889999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP  185 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p  185 (205)
                      ++|.+++..+..+..+++|++|++++|.+.+..|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999996655667889999999999999986654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.77  E-value=1.3e-18  Score=149.08  Aligned_cols=131  Identities=21%  Similarity=0.237  Sum_probs=70.1

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccc-cccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGH-LAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .++.|++++|.+.+..|..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  504 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM  504 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence            445555555555544555555555555555555555542 4444555555555555555555444555555555555555


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCC-CCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLS-NLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~-~L~~L~ls~N~l  204 (205)
                      ++|++++..|..+..+++|++|++++|+++ .+|..+..++ +|+++++++|++
T Consensus       505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             CSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred             CCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence            555555555555555555555555555555 4454455554 355555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.77  E-value=6e-18  Score=135.13  Aligned_cols=144  Identities=19%  Similarity=0.240  Sum_probs=119.3

Q ss_pred             CCCCcccceeeCCCC---------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEc
Q 043006           57 SPICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISF  127 (205)
Q Consensus        57 ~~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  127 (205)
                      ...|.|..+.|....         ..++.|++++|.+.+..|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            345788888886322         47899999999999777888999999999999999999877889999999999999


Q ss_pred             ccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCc--ccCChhhcCCCCCCEEEccCCCC
Q 043006          128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID--GSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       128 ~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~--~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|.++ .+|..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.++  +..|..+..+ +|++|++++|.+
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            999998 7776654  79999999999999766667889999999999999985  3556666666 666666666654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=2.1e-18  Score=128.14  Aligned_cols=128  Identities=14%  Similarity=0.218  Sum_probs=115.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+. .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            56899999999998 666 6899999999999999776  3347889999999999999999878899999999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCc-CcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNV-IDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++..|..+..+++|++|++++|. +. .+| .+..+++|++|++++|+++
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCC
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCc
Confidence            9999998888999999999999999998 65 666 6899999999999999874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.77  E-value=1.4e-19  Score=156.39  Aligned_cols=131  Identities=24%  Similarity=0.364  Sum_probs=108.7

Q ss_pred             CcEEEEEcCCCCcccc-----------------CCcccc--CCCCCCEEEccCCccccccccccCCCCCCcEEEcccCc-
Q 043006           72 QRVTALNHLDMGLGGT-----------------IPSHLG--NLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK-  131 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~-----------------~p~~l~--~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-  131 (205)
                      .+++.|++++|.++|.                 +|..+.  ++++|++|++++|.+.+.+|..+..+++|++|++++|. 
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~  285 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG  285 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence            6788999999998885                 888888  89999999999999888889888889999999999998 


Q ss_pred             CCC-CCCccccCC------CCCCEEEcccccCCCCCch--hccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006          132 LSG-SIPTWIGVL------SKLRILSLCNNSLTGLIPN--SLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN  202 (205)
Q Consensus       132 l~~-~~p~~~~~l------~~L~~l~l~~n~l~~~~p~--~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N  202 (205)
                      ++| .+|..++.+      ++|++|++++|.++ .+|.  .+..+++|++|++++|.++|.+| .++++++|++|++++|
T Consensus       286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN  363 (636)
T ss_dssp             SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred             CccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence            887 788777665      88888888888888 7777  78888888888888888887777 6777777777777776


Q ss_pred             CC
Q 043006          203 NL  204 (205)
Q Consensus       203 ~l  204 (205)
                      .+
T Consensus       364 ~l  365 (636)
T 4eco_A          364 QI  365 (636)
T ss_dssp             EE
T ss_pred             cc
Confidence            54

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.76  E-value=3.3e-18  Score=133.22  Aligned_cols=133  Identities=23%  Similarity=0.225  Sum_probs=103.2

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  131 (276)
T 2z62_A           52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV  131 (276)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred             cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence            67888899998888766677888888999999999888766677888888889998888888555557888888888888


Q ss_pred             ccccCCC-CCchhccCCCCCCeeecccCcCcccCChhhcCCCCCC----EEEccCCCC
Q 043006          152 CNNSLTG-LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLF----NLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~----~L~ls~N~l  204 (205)
                      ++|.+++ .+|..+..+++|++|++++|.+++..+..+..+++|+    .|++++|.+
T Consensus       132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l  189 (276)
T 2z62_A          132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM  189 (276)
T ss_dssp             CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCC
T ss_pred             cCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcc
Confidence            8888886 3588888888888888888888755444554444443    566666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.75  E-value=6.9e-18  Score=142.21  Aligned_cols=132  Identities=24%  Similarity=0.286  Sum_probs=85.4

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccc--ccccccCCCCCCcEEEcccCcCCCCCCcc-ccCCCCCCE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG--HLAHELGQLRRLRFISFTFNKLSGSIPTW-IGVLSKLRI  148 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~  148 (205)
                      ..++.|++++|.+.+.+|..+..+++|++|++++|.+++  .+|..+..+++|++|++++|.+++.+|.. +..+++|++
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence            567888888888887777778888888888888888875  45566777778888888888777546643 555555555


Q ss_pred             EEcccccCCCC---------------------CchhccCCCCCCeeecccCcCcccCChh-hcCCCCCCEEEccCCCC
Q 043006          149 LSLCNNSLTGL---------------------IPNSLFNLSKLEMLDAMFNVIDGSIPSG-IRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       149 l~l~~n~l~~~---------------------~p~~~~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~ls~N~l  204 (205)
                      |++++|.+++.                     +|..+..+++|++|++++|+++ .+|.. +.++++|++|++++|++
T Consensus       404 L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             EECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCC
Confidence            55555555444                     4444445555555555555555 44443 45555555555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.75  E-value=1.1e-17  Score=143.45  Aligned_cols=134  Identities=25%  Similarity=0.290  Sum_probs=121.7

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccc-cccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFH-GHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      ..++.++++.|.+.+..+..+..++.+++|++++|.+. +..|..+..+++|++|++++|++++..|..|.++++|++|+
T Consensus       445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~  524 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  524 (635)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence            56778899999998888888999999999999999854 45678899999999999999999988889999999999999


Q ss_pred             cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCC-CCCCEEEccCCCCC
Q 043006          151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNL-SNLFNLNLGYNNLQ  205 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l-~~L~~L~ls~N~l~  205 (205)
                      +++|++++..|..+..+++|++|++++|++++..|..+.++ ++|++|++++|+++
T Consensus       525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            99999998888889999999999999999998888888888 68999999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.75  E-value=4e-17  Score=122.01  Aligned_cols=128  Identities=23%  Similarity=0.224  Sum_probs=108.8

Q ss_pred             EEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccc
Q 043006           75 TALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN  154 (205)
Q Consensus        75 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n  154 (205)
                      +.++.++++++ .+|..+  .+++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            46788888876 566544  358999999999999666666889999999999999999555566789999999999999


Q ss_pred             cCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          155 SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       155 ~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      .+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            999776667889999999999999999555556889999999999999874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.74  E-value=1.2e-18  Score=138.12  Aligned_cols=133  Identities=17%  Similarity=0.159  Sum_probs=75.4

Q ss_pred             CcEEEEEcCCCCccccCCccccCC-----CCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCC--CCccc--cC
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNL-----LFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGS--IPTWI--GV  142 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l-----~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~--~p~~~--~~  142 (205)
                      .+++.|++++|.+++. |..+..+     ++|++|++++|.+++..|..+..+++|++|++++|++.+.  .|..+  ..
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            4455555555555544 4444444     5566666666665544445566666666666666665543  22233  55


Q ss_pred             CCCCCEEEcccccCCC--CCc-hhccCCCCCCeeecccCcCcccCC-hhhcCCCCCCEEEccCCCCC
Q 043006          143 LSKLRILSLCNNSLTG--LIP-NSLFNLSKLEMLDAMFNVIDGSIP-SGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       143 l~~L~~l~l~~n~l~~--~~p-~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~  205 (205)
                      +++|++|++++|.+++  .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.|+
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence            6666666666666652  112 223455677777777777765554 33445667777777777653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.74  E-value=9.5e-18  Score=140.04  Aligned_cols=133  Identities=20%  Similarity=0.166  Sum_probs=102.0

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+.+..|..+.++++|++|++++|.++...+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        56 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l  135 (477)
T 2id5_A           56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV  135 (477)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEE
T ss_pred             CCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEEC
Confidence            67888888888888777888888888888888888887544445777888888888888888666777788888888888


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|.+++..|..+..+++|+.|++++|.+++..+..+.++++|+.|++++|.+
T Consensus       136 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          136 GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             CCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             CCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence            88888776677777777888888888877743334566777777777777665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.74  E-value=7.9e-18  Score=143.02  Aligned_cols=133  Identities=20%  Similarity=0.224  Sum_probs=94.6

Q ss_pred             cEEEEEcCCCCccccCC-ccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCC-CCCCccccCCCCCCEEE
Q 043006           73 RVTALNHLDMGLGGTIP-SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLS-GSIPTWIGVLSKLRILS  150 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~l~  150 (205)
                      +++.|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|+
T Consensus       397 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~  476 (570)
T 2z63_A          397 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  476 (570)
T ss_dssp             TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEE
Confidence            44555555555554433 34566667777777777776666666777777777777777776 45777777778888888


Q ss_pred             cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      +++|++++..|..+..+++|++|++++|.+++..|..+.++++|+.|++++|+++
T Consensus       477 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence            8888887776777777888888888888887665666777888888888888753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.74  E-value=1.8e-17  Score=141.11  Aligned_cols=133  Identities=23%  Similarity=0.274  Sum_probs=85.3

Q ss_pred             CCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccc--ccccccCCCCCCcEEEcccCcCCCCCCcc-ccCCCCCC
Q 043006           71 HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG--HLAHELGQLRRLRFISFTFNKLSGSIPTW-IGVLSKLR  147 (205)
Q Consensus        71 ~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~  147 (205)
                      ...++.|++++|.+++.+|..+..+++|++|++++|.+++  .+|..+..+++|++|++++|.+++.+|.. +..+++|+
T Consensus       352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~  431 (562)
T 3a79_B          352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL  431 (562)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred             CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence            3678888888888887778788888888888888888875  33456777888888888888887645543 55555555


Q ss_pred             EEEcccccCCCC---------------------CchhccCCCCCCeeecccCcCcccCChh-hcCCCCCCEEEccCCCC
Q 043006          148 ILSLCNNSLTGL---------------------IPNSLFNLSKLEMLDAMFNVIDGSIPSG-IRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       148 ~l~l~~n~l~~~---------------------~p~~~~~l~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~ls~N~l  204 (205)
                      +|++++|.+++.                     +|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++
T Consensus       432 ~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          432 VLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             EEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred             EEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence            555555555443                     3444444555555555555555 44443 45555555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=1.1e-17  Score=140.38  Aligned_cols=141  Identities=20%  Similarity=0.167  Sum_probs=117.5

Q ss_pred             CcccceeeCCCCCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccC-CCCCCcEEEcccCcCCCCCCc
Q 043006           60 CNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELG-QLRRLRFISFTFNKLSGSIPT  138 (205)
Q Consensus        60 c~w~gv~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~p~  138 (205)
                      |.+.++.+.. .+.++.|++++|.+.+..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++. |.
T Consensus       109 N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~  186 (487)
T 3oja_A          109 NNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG  186 (487)
T ss_dssp             SCCCCEEECC-CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC
T ss_pred             CcCCCCCccc-cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc
Confidence            3445555542 36789999999999988888889999999999999999987787775 789999999999999854 33


Q ss_pred             cccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          139 WIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       139 ~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                       ...+++|++|++++|.+++. |..+..+++|+.|++++|.++ .+|..++.+++|+.|++++|.++
T Consensus       187 -~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          187 -QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             -CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBC
T ss_pred             -cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCc
Confidence             44689999999999999965 455888999999999999998 57888889999999999999864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.73  E-value=5.7e-18  Score=136.34  Aligned_cols=132  Identities=21%  Similarity=0.248  Sum_probs=116.0

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCc--cccCCCCCCEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPT--WIGVLSKLRIL  149 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~l  149 (205)
                      .+++.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|.  .+..+++|++|
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L  154 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQIL  154 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEE
Confidence            68999999999999888888999999999999999999544444889999999999999999 5665  78899999999


Q ss_pred             Ecccc-cCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          150 SLCNN-SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       150 ~l~~n-~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++++| .+++..|..+..+++|++|++++|.+++..|..++++++|++|++++|.+
T Consensus       155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            99999 46766677888999999999999999988888898988898898888875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.73  E-value=2.3e-18  Score=152.95  Aligned_cols=130  Identities=22%  Similarity=0.277  Sum_probs=101.9

Q ss_pred             CcEEEEEcCCCCccc-----------------cCCcccc--CCCCCCEEEccCCccccccccccCCCCCCcEEEcccCc-
Q 043006           72 QRVTALNHLDMGLGG-----------------TIPSHLG--NLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK-  131 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~-----------------~~p~~l~--~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-  131 (205)
                      .+++.|++++|.+++                 .+|+.+.  ++++|++|++++|.+.+.+|..+..+++|++|++++|+ 
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~  527 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG  527 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence            678888888888887                 3888877  88888888888888888888888888888888888887 


Q ss_pred             CCC-CCCccccCCC-------CCCEEEcccccCCCCCch--hccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccC
Q 043006          132 LSG-SIPTWIGVLS-------KLRILSLCNNSLTGLIPN--SLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGY  201 (205)
Q Consensus       132 l~~-~~p~~~~~l~-------~L~~l~l~~n~l~~~~p~--~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~  201 (205)
                      ++| .+|..++.++       +|++|++++|.++ .+|.  .+..+++|+.|++++|.++ .+| .++++++|+.|++++
T Consensus       528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY  604 (876)
T ss_dssp             SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS
T ss_pred             cccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC
Confidence            777 6776555443       7888888888877 6776  7777777777777777777 777 677777777777777


Q ss_pred             CCC
Q 043006          202 NNL  204 (205)
Q Consensus       202 N~l  204 (205)
                      |.+
T Consensus       605 N~l  607 (876)
T 4ecn_A          605 NQI  607 (876)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.73  E-value=3.8e-17  Score=130.33  Aligned_cols=128  Identities=19%  Similarity=0.168  Sum_probs=79.1

Q ss_pred             EEEEEcCCCCccc--cCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           74 VTALNHLDMGLGG--TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        74 l~~L~l~~~~l~~--~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ++.|++++|.+..  ..+..+..+++|++|++++|.++ .+|..+.  ++|++|++++|.+++..|..+..+++|++|++
T Consensus       147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  223 (330)
T 1xku_A          147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGL  223 (330)
T ss_dssp             CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEEC
T ss_pred             ccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            3344444444321  23334444445555555555444 2333222  45666666666666555666777777777777


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|+|+
T Consensus       224 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             CSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            777777665666777777777777777777 77777777777777777777763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.73  E-value=3.2e-17  Score=121.49  Aligned_cols=123  Identities=23%  Similarity=0.263  Sum_probs=107.3

Q ss_pred             CCCcccceeeCCCC---------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcc
Q 043006           58 PICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFT  128 (205)
Q Consensus        58 ~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  128 (205)
                      ..|.|..+.|....         ..++.|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus         8 C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls   86 (193)
T 2wfh_A            8 CTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS   86 (193)
T ss_dssp             CEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence            34566666665321         57899999999998 788899999999999999999997777789999999999999


Q ss_pred             cCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCc
Q 043006          129 FNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID  181 (205)
Q Consensus       129 ~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~  181 (205)
                      +|.+++..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus        87 ~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            99999777778999999999999999999666667889999999999999886

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.73  E-value=1.5e-17  Score=140.16  Aligned_cols=127  Identities=20%  Similarity=0.179  Sum_probs=106.7

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..  .+++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            57888999999988777778888899999999999988777888888999999999999888 67766  7889999999


Q ss_pred             ccccCCC-CCchhccCCCCCCeeecccCcCcccCChhhcCCCCC--CEEEccCCCC
Q 043006          152 CNNSLTG-LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNL--FNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L--~~L~ls~N~l  204 (205)
                      ++|.+++ .+|..+..+++|++|++++|.+++   ..+..+++|  +.|++++|.+
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence            9999887 577888889999999999998874   346677777  8899988876

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.73  E-value=3.8e-18  Score=135.33  Aligned_cols=131  Identities=22%  Similarity=0.227  Sum_probs=82.0

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccc--ccccc--CCCCCCcEEEcccCcCCC--CCC-ccccCCC
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGH--LAHEL--GQLRRLRFISFTFNKLSG--SIP-TWIGVLS  144 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~--~p~~~--~~l~~L~~L~l~~n~l~~--~~p-~~~~~l~  144 (205)
                      .++++|++++|.+.+..|..+..+++|++|++++|.+.+.  .|..+  ..+++|++|++++|.+++  .++ ..+..++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            4566777777777666656667777777777777766543  23333  566777777777777662  112 2234566


Q ss_pred             CCCEEEcccccCCCCCc-hhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          145 KLRILSLCNNSLTGLIP-NSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       145 ~L~~l~l~~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      +|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|+|+
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD  287 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCC
Confidence            77777777777776554 33445667777777777776 6666554  66777777777653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=1e-17  Score=135.42  Aligned_cols=132  Identities=20%  Similarity=0.187  Sum_probs=114.7

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  143 (361)
T 2xot_A           64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL  143 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence            67999999999999877788999999999999999999766677899999999999999999777889999999999999


Q ss_pred             ccccCCCCCchhc---cCCCCCCeeecccCcCcccCC-hhhcCCCC--CCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSL---FNLSKLEMLDAMFNVIDGSIP-SGIRNLSN--LFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~---~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~--L~~L~ls~N~l  204 (205)
                      ++|.+++..+..+   ..+++|+.|++++|.++ .+| ..+..++.  ++.|++++|++
T Consensus       144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCc
Confidence            9999996444444   56899999999999999 555 56777776  48899999986

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.72  E-value=3.7e-17  Score=140.05  Aligned_cols=134  Identities=20%  Similarity=0.106  Sum_probs=120.9

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .++++|++++|.+.+..|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L  136 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL  136 (606)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred             ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence            68999999999999888999999999999999999999888989999999999999999999666788999999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCC--EEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLF--NLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~--~L~ls~N~l~  205 (205)
                      ++|.+++..+..+..+++|++|++++|.+++..|..++.+++|+  .|++++|.++
T Consensus       137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence            99999974434455599999999999999977788899999999  8999999864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.72  E-value=2.7e-17  Score=120.00  Aligned_cols=127  Identities=23%  Similarity=0.219  Sum_probs=108.9

Q ss_pred             CcEEEEEcCCCCccccCCccccCCC-CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLL-FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      ..++.|++++|.++ .+|. +..+. +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            57899999999998 4554 55555 999999999999964  5789999999999999999944334458999999999


Q ss_pred             cccccCCCCCch--hccCCCCCCeeecccCcCcccCChh----hcCCCCCCEEEccCCCC
Q 043006          151 LCNNSLTGLIPN--SLFNLSKLEMLDAMFNVIDGSIPSG----IRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       151 l~~n~l~~~~p~--~~~~l~~L~~L~ls~n~l~~~~p~~----~~~l~~L~~L~ls~N~l  204 (205)
                      +++|.++ .+|.  .+..+++|+.|++++|.++ .+|..    ++.+++|++||+++|.+
T Consensus        95 L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           95 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            9999997 5665  7889999999999999998 67775    88999999999999863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.72  E-value=6e-17  Score=134.11  Aligned_cols=131  Identities=27%  Similarity=0.292  Sum_probs=73.4

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccccc-------------------------CCCCCCcEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHEL-------------------------GQLRRLRFIS  126 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~-------------------------~~l~~L~~L~  126 (205)
                      .+++.|++++|.+++..+..+..+++|++|++++|.++...+..|                         ..+++|++|+
T Consensus       112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  191 (440)
T 3zyj_A          112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN  191 (440)
T ss_dssp             SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred             ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence            567778888877775555567777777777777777664333233                         3344444444


Q ss_pred             cccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       127 l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +++|.++ .+| .+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..|..+.++++|+.|++++|+|
T Consensus       192 L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          192 LAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             CTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             CCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence            4444444 333 244445555555555555544455555555555555555555544444455555555555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.71  E-value=5.6e-17  Score=129.51  Aligned_cols=132  Identities=20%  Similarity=0.179  Sum_probs=85.5

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccc--ccccccCCC--------------------CCCcEEEcccC
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG--HLAHELGQL--------------------RRLRFISFTFN  130 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~--~~p~~~~~l--------------------~~L~~L~l~~n  130 (205)
                      .++.|++++|.+.+..+..+..+++|++|++++|.++.  ..|..+..+                    ++|++|++++|
T Consensus       124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n  203 (332)
T 2ft3_A          124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN  203 (332)
T ss_dssp             TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS
T ss_pred             cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCC
Confidence            34444454454443333345556666666666666541  223333222                    34555556666


Q ss_pred             cCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          131 KLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       131 ~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      .+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+|+
T Consensus       204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCC
Confidence            666444566777778888888888888766667778888888888888887 77877888888888888888764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.71  E-value=3.2e-17  Score=130.23  Aligned_cols=130  Identities=19%  Similarity=0.163  Sum_probs=104.0

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccccc-CCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHEL-GQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      ..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++ +|. ...+++|++|+
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L~~L~  197 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLD  197 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccCCEEE
Confidence            456777777777776666677888888888888888886666655 367888899998888874 343 34588899999


Q ss_pred             cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      +++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus       198 Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          198 LSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             CCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            99999985 4555888899999999999998 67888888999999999999873

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=9.8e-17  Score=133.25  Aligned_cols=131  Identities=23%  Similarity=0.250  Sum_probs=81.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccc-------------------------cCCCCCCcEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHE-------------------------LGQLRRLRFIS  126 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~-------------------------~~~l~~L~~L~  126 (205)
                      .+++.|++++|.+++..+..+..+++|++|++++|.++...+..                         +..+++|++|+
T Consensus       123 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  202 (452)
T 3zyi_A          123 ASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN  202 (452)
T ss_dssp             TTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred             ccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence            56788888888887655556777888888888888776433323                         33445555555


Q ss_pred             cccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       127 l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +++|.++ .+| .+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|+.|++++|+|
T Consensus       203 L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          203 LGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             CTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence            5555554 233 244555666666666666655556666666666666666666655555566666666666666654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.71  E-value=1.3e-16  Score=130.04  Aligned_cols=129  Identities=22%  Similarity=0.271  Sum_probs=109.4

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcc-ccCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTW-IGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~L~~l~  150 (205)
                      ++++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+|.. +..+++|++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence            57899999999999777778999999999999999999777778899999999999999999 66654 68999999999


Q ss_pred             cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +++|.+++..|..+..+++|++|++++|.+++ ++  ++.+++|+.+++++|.+
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cccccccceeecccccc
Confidence            99999998878889999999999999999984 33  34455555555555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.71  E-value=1.1e-16  Score=137.45  Aligned_cols=130  Identities=21%  Similarity=0.226  Sum_probs=110.6

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+.+..|..+..+++|++|++++|.+++..|..|+.+++|++|++++|.+++..+..+..+++|++|++
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            57899999999999888889999999999999999999877778899999999999999999444445789999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|.+++..|..+..+++|+.|++++|.+++ ++  ++.+++|+.|++++|.+
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~--~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC--GGGCTTCSEEECCSSCC
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC--hhhhhhhhhhhcccCcc
Confidence            9999998888889999999999999999984 33  34455555555555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.71  E-value=1.2e-17  Score=132.22  Aligned_cols=129  Identities=20%  Similarity=0.188  Sum_probs=75.9

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccc--cc--cccCCCCCCcEEEcccCcCCCCCCc----cccCC
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGH--LA--HELGQLRRLRFISFTFNKLSGSIPT----WIGVL  143 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~--~p--~~~~~l~~L~~L~l~~n~l~~~~p~----~~~~l  143 (205)
                      .+++.|++++|.+.+..|..+..+++|++|++++|++.+.  ++  ..+..+++|++|++++|.++ .++.    .+..+
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence            5788888888888777777788888888888888876542  21  11245556666666666654 2222    13445


Q ss_pred             CCCCEEEcccccCCCCCchhccCC---CCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          144 SKLRILSLCNNSLTGLIPNSLFNL---SKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       144 ~~L~~l~l~~n~l~~~~p~~~~~l---~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|+|
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l  284 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRL  284 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcC
Confidence            556666666666655545444443   45555555555555 4454332  4555555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.71  E-value=3.2e-17  Score=116.21  Aligned_cols=109  Identities=22%  Similarity=0.181  Sum_probs=98.2

Q ss_pred             CCCCCEEEccCCccc-cccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCee
Q 043006           95 LLFLMSLDLTLNNFH-GHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEML  173 (205)
Q Consensus        95 l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L  173 (205)
                      .+++++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            468999999999998 78898889999999999999999954  778999999999999999998789888889999999


Q ss_pred             ecccCcCccc-CChhhcCCCCCCEEEccCCCCC
Q 043006          174 DAMFNVIDGS-IPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       174 ~ls~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++++|.+++. .|..++.+++|++|++++|.++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~  126 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT  126 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence            9999999852 3477899999999999999863

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.71  E-value=7.5e-17  Score=137.32  Aligned_cols=127  Identities=20%  Similarity=0.176  Sum_probs=105.2

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ++++.|++++|.+.+..|..+..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+|..  .+++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            57889999999988777778888999999999999998777888888999999999999988 67766  7889999999


Q ss_pred             ccccCCC-CCchhccCCCCCCeeecccCcCcccCChhhcCCCCC--CEEEccCCCC
Q 043006          152 CNNSLTG-LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNL--FNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L--~~L~ls~N~l  204 (205)
                      ++|.+++ .+|..+..+++|++|++++|.+++.   .+..+++|  ++|++++|.+
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence            9999886 4567888899999999999988742   34455555  8899988876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.70  E-value=2.3e-17  Score=139.76  Aligned_cols=132  Identities=16%  Similarity=0.185  Sum_probs=112.4

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCC-CCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSG-SIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~l~  150 (205)
                      .++++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ ..|..+..+++|++|+
T Consensus        50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  129 (549)
T 2z81_A           50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR  129 (549)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence            689999999999998888899999999999999999997777779999999999999999985 3567899999999999


Q ss_pred             cccccCCCCCc-hhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCC
Q 043006          151 LCNNSLTGLIP-NSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNN  203 (205)
Q Consensus       151 l~~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~  203 (205)
                      +++|.+.+.+| ..+..+++|++|++++|.+++.+|..++++++|++|++++|.
T Consensus       130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            99998555555 678899999999999999998888877765555555554443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.70  E-value=5.7e-17  Score=140.74  Aligned_cols=134  Identities=19%  Similarity=0.127  Sum_probs=113.4

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .++++|++++|.+.+..|..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++++++|++|++
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL  128 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence            67899999999998888888889999999999999998544446889999999999999998666678899999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhc--CCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIR--NLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~--~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++..|..+..+++|++|++++|.+++..|..+.  .+++|+.|++++|.++
T Consensus       129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            99999988888888899999999999999866555554  5678999999988763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.70  E-value=1.9e-16  Score=115.02  Aligned_cols=106  Identities=21%  Similarity=0.182  Sum_probs=90.3

Q ss_pred             EEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccc
Q 043006           75 TALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN  154 (205)
Q Consensus        75 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n  154 (205)
                      +.++++++.++ .+|..+.  +.+++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus        12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            46778888887 4776663  78999999999999777888999999999999999999555566789999999999999


Q ss_pred             cCCCCCchhccCCCCCCeeecccCcCccc
Q 043006          155 SLTGLIPNSLFNLSKLEMLDAMFNVIDGS  183 (205)
Q Consensus       155 ~l~~~~p~~~~~l~~L~~L~ls~n~l~~~  183 (205)
                      ++++..+..+..+++|++|++++|.+...
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            99976666788999999999999998744

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=1e-16  Score=115.80  Aligned_cols=108  Identities=21%  Similarity=0.195  Sum_probs=97.7

Q ss_pred             CCCCCEEEccCCccc-cccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCee
Q 043006           95 LLFLMSLDLTLNNFH-GHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEML  173 (205)
Q Consensus        95 l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L  173 (205)
                      .++|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            468999999999998 78898889999999999999999854  778999999999999999998788888889999999


Q ss_pred             ecccCcCcccCC--hhhcCCCCCCEEEccCCCCC
Q 043006          174 DAMFNVIDGSIP--SGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       174 ~ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++++|.++ .+|  ..++.+++|++|++++|.++
T Consensus       101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~  133 (168)
T 2ell_A          101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVT  133 (168)
T ss_dssp             ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred             eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCc
Confidence            99999998 444  67899999999999999863

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.69  E-value=2.1e-17  Score=130.90  Aligned_cols=133  Identities=20%  Similarity=0.175  Sum_probs=81.3

Q ss_pred             cEEEEEcCCCCccccCCccc--cCCCCCCEEEccCCccccccc----cccCCCCCCcEEEcccCcCCCCCCccccCCCCC
Q 043006           73 RVTALNHLDMGLGGTIPSHL--GNLLFLMSLDLTLNNFHGHLA----HELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL  146 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l--~~l~~L~~L~l~~n~~~~~~p----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  146 (205)
                      +++.|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+++..|..+..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            47777777777777777666  666677777777776665333    223455666666666666665555556666666


Q ss_pred             CEEEcccccCCC---------------------------CCch----hccCCCCCCeeecccCcCcccCChhhcCC---C
Q 043006          147 RILSLCNNSLTG---------------------------LIPN----SLFNLSKLEMLDAMFNVIDGSIPSGIRNL---S  192 (205)
Q Consensus       147 ~~l~l~~n~l~~---------------------------~~p~----~~~~l~~L~~L~ls~n~l~~~~p~~~~~l---~  192 (205)
                      ++|++++|++.+                           .+|.    .+..+++|++|++++|.+++..|..+..+   +
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~  251 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS  251 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence            666666665432                           1122    12445667777777777765556655554   4


Q ss_pred             CCCEEEccCCCCC
Q 043006          193 NLFNLNLGYNNLQ  205 (205)
Q Consensus       193 ~L~~L~ls~N~l~  205 (205)
                      +|++|++++|+|+
T Consensus       252 ~L~~L~Ls~N~l~  264 (310)
T 4glp_A          252 ALNSLNLSFAGLE  264 (310)
T ss_dssp             TCCCEECCSSCCC
T ss_pred             cCCEEECCCCCCC
Confidence            7777777777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.69  E-value=3.1e-17  Score=137.67  Aligned_cols=129  Identities=24%  Similarity=0.179  Sum_probs=65.1

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccc----------------ccCCCCCCcEEEcccCcCCCC
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAH----------------ELGQLRRLRFISFTFNKLSGS  135 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~----------------~~~~l~~L~~L~l~~n~l~~~  135 (205)
                      ..++.|++++|.+++..|  +..+++|++|++++|.+++..+.                ....+++|++|++++|.+++.
T Consensus        58 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~  135 (487)
T 3oja_A           58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML  135 (487)
T ss_dssp             TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSG
T ss_pred             CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCC
Confidence            456666666666655443  56666666666666665532110                001123444444444444444


Q ss_pred             CCccccCCCCCCEEEcccccCCCCCchhcc-CCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          136 IPTWIGVLSKLRILSLCNNSLTGLIPNSLF-NLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       136 ~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~-~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      .|..++.+++|++|++++|.+++..|..+. .+++|+.|++++|.+++. |. ...+++|+.|++++|.|
T Consensus       136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l  203 (487)
T 3oja_A          136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKL  203 (487)
T ss_dssp             GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCC
T ss_pred             CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCC
Confidence            444455555555555555555554444443 455555555555555533 21 22355555566655554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=3e-16  Score=123.29  Aligned_cols=123  Identities=33%  Similarity=0.336  Sum_probs=79.5

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+++..+  +..+++|++|++++|.+++ +| .+..+++|++|++++|.+++ + +.+..+++|++|++
T Consensus        68 ~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l  141 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  141 (291)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred             CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEc
Confidence            567777777777764333  6777777777777777763 33 36667777777777777763 3 34566667777777


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|.+++.  ..+..+++|+.|++++|.+++. +. +..+++|+.|++++|.|
T Consensus       142 ~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          142 GNNKITDI--TVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCC
T ss_pred             cCCcCCcc--hhhccCCCCCEEEccCCccccc-hh-hcCCCccCEEECCCCcC
Confidence            77766643  3466666666666666666633 32 56666666666666655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.68  E-value=1e-16  Score=142.51  Aligned_cols=132  Identities=23%  Similarity=0.122  Sum_probs=86.4

Q ss_pred             CcEEEEEcCCCCccccC-CccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcc--ccCCCCCCE
Q 043006           72 QRVTALNHLDMGLGGTI-PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTW--IGVLSKLRI  148 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~  148 (205)
                      ..++.|++++|...+.+ |..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..  +..+++|++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~  127 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR  127 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence            56677777777555555 556777777777777777777666777777777777777777777655544  667777777


Q ss_pred             EEcccccCCCCCc-hhccCCCCCCeeecccCcCcccCChhhcCC--CCCCEEEccCCC
Q 043006          149 LSLCNNSLTGLIP-NSLFNLSKLEMLDAMFNVIDGSIPSGIRNL--SNLFNLNLGYNN  203 (205)
Q Consensus       149 l~l~~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l--~~L~~L~ls~N~  203 (205)
                      |++++|.+++..| ..+..+++|++|++++|.+++..|..+..+  ++|+.|++++|.
T Consensus       128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~  185 (844)
T 3j0a_A          128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS  185 (844)
T ss_dssp             EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred             EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence            7777777765543 456777777777777777765555555443  444444444443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=4.7e-16  Score=120.51  Aligned_cols=122  Identities=25%  Similarity=0.237  Sum_probs=88.7

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+.+. ++ +..+++|++|++++|.+++ +|.. .. ++|++|++++|.+++ ++ .+..+++|++|++
T Consensus        63 ~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L  135 (263)
T 1xeu_A           63 TNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSI  135 (263)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCC-Ch-hhcCcccccEEEC
Confidence            5677888888877743 33 7777888888888888774 4432 22 778888888888773 33 4777888888888


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|++++. | .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+
T Consensus       136 s~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          136 RNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             TTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             CCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence            88888754 4 577788888888888888744  5577788888888888764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.68  E-value=4.9e-16  Score=123.01  Aligned_cols=122  Identities=29%  Similarity=0.421  Sum_probs=56.2

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      +++.|++++|.+.+ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|++|+++
T Consensus        86 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~  159 (308)
T 1h6u_A           86 KITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIG  159 (308)
T ss_dssp             SCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECC
T ss_pred             CCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEcc
Confidence            34444444444432 11 24444444444444444442 221 4444444555555444442 222 4445555555555


Q ss_pred             cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +|.+++. +. +..+++|+.|++++|.++ .++. +..+++|++|++++|++
T Consensus       160 ~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          160 NAQVSDL-TP-LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             SSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSCC
T ss_pred             CCcCCCC-hh-hcCCCCCCEEECCCCccC-cChh-hcCCCCCCEEEccCCcc
Confidence            5555532 22 455555555555555555 2222 45555556666655554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.68  E-value=4.2e-16  Score=113.58  Aligned_cols=108  Identities=22%  Similarity=0.189  Sum_probs=91.3

Q ss_pred             EEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccc
Q 043006           75 TALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN  154 (205)
Q Consensus        75 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n  154 (205)
                      +.++++++.++ .+|..+.  +.|++|++++|.+++..|..|..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            57889999886 6787665  78999999999999877888999999999999999999544455789999999999999


Q ss_pred             cCCCCCchhccCCCCCCeeecccCcCcccCCh
Q 043006          155 SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS  186 (205)
Q Consensus       155 ~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~  186 (205)
                      ++++..+..+..+++|++|++++|.+. ..+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~  122 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD-CECR  122 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence            999665556889999999999999998 3443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.68  E-value=6.9e-17  Score=123.20  Aligned_cols=132  Identities=17%  Similarity=0.087  Sum_probs=67.3

Q ss_pred             CcEEEEEcCCCC-ccccCCccccCCCCCCEEEccC-CccccccccccCCCCCCcEEEcccCcCC----------------
Q 043006           72 QRVTALNHLDMG-LGGTIPSHLGNLLFLMSLDLTL-NNFHGHLAHELGQLRRLRFISFTFNKLS----------------  133 (205)
Q Consensus        72 ~~l~~L~l~~~~-l~~~~p~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~l~----------------  133 (205)
                      .+++.|++++|. +++..+..+..+++|++|++++ |.+++..+..|..+++|++|++++|.++                
T Consensus        55 ~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~  134 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFI  134 (239)
T ss_dssp             TTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEE
T ss_pred             CCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccE
Confidence            345555555554 4433333455555555555555 5555333334445555555555555444                


Q ss_pred             ----------CCCCccccCCCCCC-EEEcccccCCCCCchhccCCCCCCeeecccCc-CcccCChhhcCC-CCCCEEEcc
Q 043006          134 ----------GSIPTWIGVLSKLR-ILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNV-IDGSIPSGIRNL-SNLFNLNLG  200 (205)
Q Consensus       134 ----------~~~p~~~~~l~~L~-~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~-l~~~~p~~~~~l-~~L~~L~ls  200 (205)
                                +..+..+..+++|+ ++++++|.++ .+|......++|+.|++++|. +++..+..+..+ ++|+.|+++
T Consensus       135 L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~  213 (239)
T 2xwt_C          135 LEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVS  213 (239)
T ss_dssp             EEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECT
T ss_pred             EECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECC
Confidence                      22223345555555 5555555555 333332223556666666663 553333445566 666666666


Q ss_pred             CCCC
Q 043006          201 YNNL  204 (205)
Q Consensus       201 ~N~l  204 (205)
                      +|++
T Consensus       214 ~N~l  217 (239)
T 2xwt_C          214 QTSV  217 (239)
T ss_dssp             TCCC
T ss_pred             CCcc
Confidence            6655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=2.1e-16  Score=134.89  Aligned_cols=122  Identities=25%  Similarity=0.264  Sum_probs=108.1

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      .++.|++++|.+++ +|. +..+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +| .++.+++|++|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            47889999999986 676 999999999999999999 889999999999999999999994 77 89999999999999


Q ss_pred             cccCCCCC-chhccCCCCCCeeecccCcCcccCCh---hhcCCCCCCEEEc
Q 043006          153 NNSLTGLI-PNSLFNLSKLEMLDAMFNVIDGSIPS---GIRNLSNLFNLNL  199 (205)
Q Consensus       153 ~n~l~~~~-p~~~~~l~~L~~L~ls~n~l~~~~p~---~~~~l~~L~~L~l  199 (205)
                      +|.+++.. |..+..+++|+.|++++|.+++..|.   .+..+++|+.|++
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999876 99999999999999999999965442   2345889999875

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.67  E-value=1.7e-16  Score=135.25  Aligned_cols=132  Identities=23%  Similarity=0.322  Sum_probs=79.7

Q ss_pred             CCCCCCCCC-----cccce-eeCCCCCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEE
Q 043006           52 NWAMSSPIC-----NWIGI-SCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFI  125 (205)
Q Consensus        52 ~w~~~~~~c-----~w~gv-~c~~~~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L  125 (205)
                      +|.....+|     .|.|+ .|..  .+++.|++++|.+++ +|..+.  ++|++|++++|.++ .+|   ..+++|++|
T Consensus        35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L  105 (571)
T 3cvr_A           35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYL  105 (571)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred             HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence            344444556     68888 6753  468888888888875 666553  56777777777776 566   345677777


Q ss_pred             EcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          126 SFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       126 ~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++++|.+++ +|. +..  +|++|++++|.+++ +|.   .+++|+.|++++|.+++ +|.   .+++|++|++++|.|
T Consensus       106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL  172 (571)
T ss_dssp             ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred             EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence            777777763 555 433  66666666666664 443   34555555555555552 443   334445555554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.67  E-value=3.2e-16  Score=125.52  Aligned_cols=126  Identities=23%  Similarity=0.272  Sum_probs=94.5

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+++. ++ +..+++|++|++++|.+++ + ..+..+++|++|++++|.+++ + +.+..+++|++|++
T Consensus       221 ~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          221 TRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFL  294 (347)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             CcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEEC
Confidence            5677777877777643 33 7777888888888888774 3 356778888888888888874 3 34777888888888


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++..|..+..+++|++|++++|.+++..|  +..+++|+.|++++|.|+
T Consensus       295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8888887777778888888888888888885444  778888888888888774

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.67  E-value=1.1e-15  Score=121.07  Aligned_cols=124  Identities=22%  Similarity=0.337  Sum_probs=92.9

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+.+. ++ +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++
T Consensus        63 ~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence            5678888888887743 33 7778888888888888774 34 57778888888888888873 443 778888888888


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++. +. +..+++|+.|++++|.++ .++. +.++++|+.|++++|.++
T Consensus       137 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          137 DLNQITNI-SP-LAGLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CSSCCCCC-GG-GGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC
T ss_pred             CCCccCcC-cc-ccCCCCccEEEccCCcCC-CChh-hcCCCCCCEEECCCCccC
Confidence            88888754 33 777888888888888887 3444 778888888888888763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.65  E-value=1.7e-15  Score=118.95  Aligned_cols=124  Identities=24%  Similarity=0.294  Sum_probs=108.2

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ +| .+..+++|++|++
T Consensus        46 ~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             CcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence            568999999999874 44 488899999999999999854 44 8999999999999999984 44 4899999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|++++.  ..+..+++|+.|++++|.+++ + ..++.+++|++|++++|.++
T Consensus       120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          120 EHNGISDI--NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             TTSCCCCC--GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC
T ss_pred             CCCcCCCC--hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccc
Confidence            99999964  468899999999999999984 4 56899999999999999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=7.6e-16  Score=119.37  Aligned_cols=123  Identities=27%  Similarity=0.272  Sum_probs=106.6

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+. .+| .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++ .+|... . ++|++|++
T Consensus        41 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~-~l~~~~-~-~~L~~L~L  113 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLK-NLNGIP-S-ACLSRLFL  113 (263)
T ss_dssp             TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCS-CCTTCC-C-SSCCEEEC
T ss_pred             CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccC-CcCccc-c-CcccEEEc
Confidence            67899999999997 455 68899999999999999995 444 899999999999999999 455433 3 99999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++. + .+..+++|+.|++++|++++ +| .++.+++|++|++++|+++
T Consensus       114 ~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A          114 DNNELRDT-D-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             CSSCCSBS-G-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCC
T ss_pred             cCCccCCC-h-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCc
Confidence            99999964 4 58899999999999999984 55 6889999999999999874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=1.9e-17  Score=144.99  Aligned_cols=113  Identities=25%  Similarity=0.340  Sum_probs=105.8

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|+|
T Consensus       224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L  300 (727)
T 4b8c_D          224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF  300 (727)
T ss_dssp             CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred             CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence            67899999999998 78888899999999999999999 89999999999999999999999 88999999999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhh
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI  188 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~  188 (205)
                      ++|.++ .+|..|+.+++|+.|++++|.+++.+|..+
T Consensus       301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            999998 788889999999999999999998877655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=1.5e-15  Score=130.50  Aligned_cols=123  Identities=33%  Similarity=0.366  Sum_probs=63.7

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+.+..|  +..+++|++|++++|.+++ +| .+..+++|++|++++|.+++ + +.+..+++|+.|++
T Consensus        65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~L  138 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  138 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEEC
Confidence            456666666666654322  5555666666666665552 22 35555555555555555552 2 23445555555555


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|.+++.  ..+..+++|+.|++++|.+.+..|  +..+++|+.|+|++|.|
T Consensus       139 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i  187 (605)
T 1m9s_A          139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI  187 (605)
T ss_dssp             CSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             CCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence            55555533  334455555555555555543322  44455555555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.65  E-value=3.8e-16  Score=124.00  Aligned_cols=128  Identities=15%  Similarity=0.118  Sum_probs=99.6

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccc-cCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWI-GVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l~  150 (205)
                      ..++.|++++|.+.+..+.   .+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+ ..+++|++|+
T Consensus        99 ~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence            3445555555555543332   35678889999999887667778888999999999999986666666 4789999999


Q ss_pred             cccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       151 l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      +++|.+++. |. ...+++|++|++++|.++ .+|..+..+++|+.|++++|.|+
T Consensus       176 L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          176 LQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             CTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC
T ss_pred             CCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc
Confidence            999999854 43 335899999999999998 56777889999999999999874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.64  E-value=1.4e-15  Score=110.36  Aligned_cols=85  Identities=24%  Similarity=0.178  Sum_probs=42.3

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      .++.|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus        31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  110 (170)
T 3g39_A           31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL  110 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence            34455555555554444445555555555555555553333334455555555555555553333334555555555555


Q ss_pred             cccCC
Q 043006          153 NNSLT  157 (205)
Q Consensus       153 ~n~l~  157 (205)
                      +|+++
T Consensus       111 ~N~~~  115 (170)
T 3g39_A          111 NNPWD  115 (170)
T ss_dssp             SSCBC
T ss_pred             CCCCC
Confidence            55554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.63  E-value=3.5e-15  Score=108.67  Aligned_cols=103  Identities=17%  Similarity=0.145  Sum_probs=62.6

Q ss_pred             CEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccC
Q 043006           99 MSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN  178 (205)
Q Consensus        99 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n  178 (205)
                      +.+++++|.++ .+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45666666664 5555443  56666666666666555556666666666666666666544444556666666666666


Q ss_pred             cCcccCChhhcCCCCCCEEEccCCCC
Q 043006          179 VIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       179 ~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++++..+..+.++++|++|++++|++
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCc
Confidence            66633233366666666666666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.62  E-value=3.6e-15  Score=119.39  Aligned_cols=126  Identities=25%  Similarity=0.316  Sum_probs=97.0

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.+++++|.+.+..+  +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|++|++
T Consensus       199 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l  272 (347)
T 4fmz_A          199 TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNV  272 (347)
T ss_dssp             TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEEC
T ss_pred             CccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEc
Confidence            345555555555543322  6677788888888888874 343 7788888888888888874 3 45788889999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+++. | .+..+++|+.|++++|.+++..|..++.+++|++|++++|+++
T Consensus       273 ~~n~l~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  324 (347)
T 4fmz_A          273 GSNQISDI-S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT  324 (347)
T ss_dssp             CSSCCCCC-G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred             cCCccCCC-h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence            99988854 3 5788899999999999998777888899999999999999874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=1.7e-15  Score=129.31  Aligned_cols=104  Identities=26%  Similarity=0.324  Sum_probs=96.5

Q ss_pred             CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecc
Q 043006           97 FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAM  176 (205)
Q Consensus        97 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls  176 (205)
                      .|++|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|++|++++|.+++ +| .+..+++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            57789999999995 776 999999999999999999 899999999999999999999996 67 79999999999999


Q ss_pred             cCcCcccC-ChhhcCCCCCCEEEccCCCCC
Q 043006          177 FNVIDGSI-PSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       177 ~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      +|.+++.. |..++.+++|+.|++++|+|+
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            99999666 999999999999999999873

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.61  E-value=2.5e-18  Score=127.75  Aligned_cols=122  Identities=23%  Similarity=0.240  Sum_probs=85.2

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+..+++|++|++
T Consensus        48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred             CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence            467777777777765 55 6777777777777777777 566666666777777777777773 44 5667777777777


Q ss_pred             ccccCCCCCc-hhccCCCCCCeeecccCcCcccCChh----------hcCCCCCCEEE
Q 043006          152 CNNSLTGLIP-NSLFNLSKLEMLDAMFNVIDGSIPSG----------IRNLSNLFNLN  198 (205)
Q Consensus       152 ~~n~l~~~~p-~~~~~l~~L~~L~ls~n~l~~~~p~~----------~~~l~~L~~L~  198 (205)
                      ++|.+++..+ ..+..+++|++|++++|.+.+.+|..          +..+++|+.||
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            7777774222 35677777777887777776554432          56777777776

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.61  E-value=4.7e-15  Score=127.36  Aligned_cols=123  Identities=28%  Similarity=0.296  Sum_probs=109.2

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+.+ +| .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+++.  ..+..+++|+.|++
T Consensus        87 ~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L  160 (605)
T 1m9s_A           87 KNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-IN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL  160 (605)
T ss_dssp             TTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-CG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEEC
T ss_pred             CCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-Cc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEEC
Confidence            689999999999985 34 68999999999999999985 44 588999999999999999954  67899999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|.+++..|  +..+++|+.|++++|.+++ +| .+..+++|+.|++++|++
T Consensus       161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          161 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEE
T ss_pred             cCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcC
Confidence            9999997766  8999999999999999984 44 589999999999999975

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=2.1e-15  Score=109.81  Aligned_cols=110  Identities=20%  Similarity=0.161  Sum_probs=94.0

Q ss_pred             cccCCCCCCEEEccCCccccccccccCCCC-CCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCC
Q 043006           91 HLGNLLFLMSLDLTLNNFHGHLAHELGQLR-RLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSK  169 (205)
Q Consensus        91 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~  169 (205)
                      .+.....|++|++++|.++ .+|. +..+. +|++|++++|.+++.  +.+..+++|++|++++|.+++..|..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            4566789999999999998 4564 45554 999999999999954  67899999999999999999654455689999


Q ss_pred             CCeeecccCcCcccCCh--hhcCCCCCCEEEccCCCCC
Q 043006          170 LEMLDAMFNVIDGSIPS--GIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       170 L~~L~ls~n~l~~~~p~--~~~~l~~L~~L~ls~N~l~  205 (205)
                      |++|++++|.+. .+|.  .++.+++|+.|++++|+++
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~  126 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT  126 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence            999999999996 7776  7889999999999999863

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=5.8e-15  Score=125.81  Aligned_cols=118  Identities=25%  Similarity=0.279  Sum_probs=72.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccc-------------------ccccccCCCCCCcEEEcccCcC
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG-------------------HLAHELGQLRRLRFISFTFNKL  132 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~-------------------~~p~~~~~l~~L~~L~l~~n~l  132 (205)
                      .+++.|++++|.+++ +|. +..  +|++|++++|.+++                   .+|.   .+++|++|++++|.+
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQL  172 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC
T ss_pred             CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCC
Confidence            455666666666654 444 332  45555555555443                   1332   345566666666666


Q ss_pred             CCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCC-------CeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          133 SGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKL-------EMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       133 ~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L-------~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++ +|. +.  ++|++|++++|.++ .+|. +..  +|       +.|++++|.++ .+|..+.++++|+.|++++|+|+
T Consensus       173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          173 TF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             SC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred             CC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence            53 555 43  66777777777777 5555 433  56       88888888887 67887777888888888888874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.60  E-value=9.6e-15  Score=121.67  Aligned_cols=122  Identities=27%  Similarity=0.337  Sum_probs=54.9

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      +++.|++++|.+.+..|  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++. +. +..+++|++|+++
T Consensus       244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~  317 (466)
T 1o6v_A          244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLY  317 (466)
T ss_dssp             TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECC
T ss_pred             CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECc
Confidence            34444444444443222  4444445555555554443222  44444555555555554422 21 4444555555555


Q ss_pred             cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +|.+++..|  +..+++|+.|++++|.+++.  ..+.++++|+.|++++|++
T Consensus       318 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          318 FNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             SSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             CCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence            555544332  34444444444444444422  2344445555555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.60  E-value=5.7e-15  Score=123.04  Aligned_cols=123  Identities=28%  Similarity=0.430  Sum_probs=108.7

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++..|  +..+++|++|++
T Consensus       265 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  338 (466)
T 1o6v_A          265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF  338 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred             CCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence            679999999999986443  8899999999999999986444  7889999999999999996655  789999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|.+++.  ..+..+++|+.|++++|++++..|  +.++++|+.|++++|.+
T Consensus       339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred             CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence            99999965  468899999999999999997766  88999999999999975

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.59  E-value=1e-16  Score=127.87  Aligned_cols=58  Identities=14%  Similarity=0.095  Sum_probs=24.9

Q ss_pred             cEEEEEcCCCCcccc-CCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccC
Q 043006           73 RVTALNHLDMGLGGT-IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFN  130 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n  130 (205)
                      +++.|++++|.+.+. +|..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus        94 ~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B           94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence            344444444444332 3333444444444444444444333334444444444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.58  E-value=4.7e-16  Score=123.95  Aligned_cols=130  Identities=19%  Similarity=0.160  Sum_probs=109.2

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccc-cccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGH-LAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      ..++.++++++.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            5678888998888866554 66789999999999999865 787888999999999999999878888888999999999


Q ss_pred             cccc-cCCC-CCchhccCCCCCCeeecccC-cCccc-CChhhcCCC-CCCEEEccCC
Q 043006          151 LCNN-SLTG-LIPNSLFNLSKLEMLDAMFN-VIDGS-IPSGIRNLS-NLFNLNLGYN  202 (205)
Q Consensus       151 l~~n-~l~~-~~p~~~~~l~~L~~L~ls~n-~l~~~-~p~~~~~l~-~L~~L~ls~N  202 (205)
                      +++| .+++ .+|..+..+++|++|++++| .+++. ++..+.+++ +|++|++++|
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            9999 6775 36667788889999999999 88754 566677888 8888888887

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.58  E-value=3.3e-16  Score=127.44  Aligned_cols=134  Identities=16%  Similarity=0.235  Sum_probs=98.9

Q ss_pred             CcEEEEEcCCCCcc-ccCC---ccccCCCCCCEEEccCCcccc-----ccccccCCCCCCcEEEcccCcCC----CCCCc
Q 043006           72 QRVTALNHLDMGLG-GTIP---SHLGNLLFLMSLDLTLNNFHG-----HLAHELGQLRRLRFISFTFNKLS----GSIPT  138 (205)
Q Consensus        72 ~~l~~L~l~~~~l~-~~~p---~~l~~l~~L~~L~l~~n~~~~-----~~p~~~~~l~~L~~L~l~~n~l~----~~~p~  138 (205)
                      ++++.|++++|.++ +.+|   ..+..+++|++|++++|.++.     ..|..+..+++|++|++++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            46777777777776 3344   356667788888888888762     23446777888888888888885    46677


Q ss_pred             cccCCCCCCEEEcccccCCCC----Cchhcc--CCCCCCeeecccCcCcc----cCChhh-cCCCCCCEEEccCCCCC
Q 043006          139 WIGVLSKLRILSLCNNSLTGL----IPNSLF--NLSKLEMLDAMFNVIDG----SIPSGI-RNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       139 ~~~~l~~L~~l~l~~n~l~~~----~p~~~~--~l~~L~~L~ls~n~l~~----~~p~~~-~~l~~L~~L~ls~N~l~  205 (205)
                      .+..+++|++|++++|.+++.    +|..+.  .+++|+.|++++|.+++    .+|..+ .++++|++|++++|.++
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            778888888888888888754    455553  37888888888888886    377776 56788888888888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.56  E-value=4.3e-14  Score=117.70  Aligned_cols=120  Identities=20%  Similarity=0.246  Sum_probs=73.8

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+++. |  +..+++|++|++++|.+++ +|  ++.+++|++|++++|.+++ +|  ++.+++|++|++
T Consensus        64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEEC
Confidence            4566666666666542 2  5566666666666666664 23  5566666666666666663 33  566666666666


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|++++. +  +..+++|++|++++|...+.++  ++.+++|++|++++|+++
T Consensus       135 ~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          135 ARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             TTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCC
T ss_pred             CCCcccee-c--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccc
Confidence            66666642 2  5566666666666665444553  566777777777777653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.55  E-value=3.6e-16  Score=127.27  Aligned_cols=109  Identities=18%  Similarity=0.221  Sum_probs=56.5

Q ss_pred             CCCCEEEccCCccc-cccc---cccCCCCCCcEEEcccCcCCC-----CCCccccCCCCCCEEEcccccCC----CCCch
Q 043006           96 LFLMSLDLTLNNFH-GHLA---HELGQLRRLRFISFTFNKLSG-----SIPTWIGVLSKLRILSLCNNSLT----GLIPN  162 (205)
Q Consensus        96 ~~L~~L~l~~n~~~-~~~p---~~~~~l~~L~~L~l~~n~l~~-----~~p~~~~~l~~L~~l~l~~n~l~----~~~p~  162 (205)
                      ++|++|++++|.++ +.+|   ..+..+++|++|++++|.++.     ..|..+..+++|++|++++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            44555555555544 2222   233344555555555555541     12224555566666666666654    34555


Q ss_pred             hccCCCCCCeeecccCcCccc----CChhhc--CCCCCCEEEccCCCC
Q 043006          163 SLFNLSKLEMLDAMFNVIDGS----IPSGIR--NLSNLFNLNLGYNNL  204 (205)
Q Consensus       163 ~~~~l~~L~~L~ls~n~l~~~----~p~~~~--~l~~L~~L~ls~N~l  204 (205)
                      .+..+++|+.|++++|.+++.    +|..+.  ++++|+.|++++|.|
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence            555666666666666666533    344442  256666666666655

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.55  E-value=2.1e-14  Score=115.44  Aligned_cols=145  Identities=17%  Similarity=0.110  Sum_probs=104.3

Q ss_pred             CCcccceeeCCCC---------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccc-ccCCCCCCcE-EEc
Q 043006           59 ICNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAH-ELGQLRRLRF-ISF  127 (205)
Q Consensus        59 ~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~-L~l  127 (205)
                      .|.+..|.|....         ..++.|++++|.++..-+..|.++++|++|++++|.+.+.+|. .|..++++++ +.+
T Consensus         8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X            8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            4678888886321         4689999999999854445789999999999999998766664 5788888775 556


Q ss_pred             ccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeeccc-CcCcccCCh-hhcCCC-CCCEEEccCCCC
Q 043006          128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF-NVIDGSIPS-GIRNLS-NLFNLNLGYNNL  204 (205)
Q Consensus       128 ~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~-n~l~~~~p~-~~~~l~-~L~~L~ls~N~l  204 (205)
                      ..|+++...|..+..+++|+++++++|++++..+..+....++..+++.+ +.+. .+|. .+..+. .++.|++++|+|
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccc
Confidence            77899866678899999999999999999866555555555566666654 3444 3332 344443 455666666655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.55  E-value=2.8e-14  Score=114.41  Aligned_cols=101  Identities=21%  Similarity=0.142  Sum_probs=86.1

Q ss_pred             EcCCC-CccccCCccccCCCCCCEEEccC-CccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccccc
Q 043006           78 NHLDM-GLGGTIPSHLGNLLFLMSLDLTL-NNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNS  155 (205)
Q Consensus        78 ~l~~~-~l~~~~p~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~  155 (205)
                      +++++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|+
T Consensus        14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            34444 565 4788 99999999999996 99997777889999999999999999998888889999999999999999


Q ss_pred             CCCCCchhccCCCCCCeeecccCcCc
Q 043006          156 LTGLIPNSLFNLSKLEMLDAMFNVID  181 (205)
Q Consensus       156 l~~~~p~~~~~l~~L~~L~ls~n~l~  181 (205)
                      +++..+..+..++ |+.|++.+|.+.
T Consensus        92 l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           92 LESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             cceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9966555555555 999999999987

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.54  E-value=8.9e-14  Score=115.77  Aligned_cols=120  Identities=22%  Similarity=0.259  Sum_probs=71.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccc--------------------ccCCCCCCcEEEcccCc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAH--------------------ELGQLRRLRFISFTFNK  131 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~--------------------~~~~l~~L~~L~l~~n~  131 (205)
                      .+++.|++++|.+++ +|  +..+++|++|++++|.+++ ++-                    .+..+++|++|++++|.
T Consensus       106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC
T ss_pred             CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc
Confidence            567777777777765 33  6666777777777777664 220                    13344455555555555


Q ss_pred             CCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          132 LSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       132 l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +++ +|  +..+++|++|++++|.+++.   .+..+++|++|++++|++++ +|  ++.+++|+.|++++|++
T Consensus       182 l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          182 ITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             CCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred             cce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence            552 33  44555555666655555543   25556666666666666664 55  56666677777776665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.54  E-value=8.7e-14  Score=115.74  Aligned_cols=119  Identities=28%  Similarity=0.324  Sum_probs=77.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+++ +| .+..+++|++|++++|.+++ +|..   ..+|++|++++|.+++ +| .+..+++|+++++
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence            356777777777764 55 47777777777777777763 5543   2467777777777763 55 4677777777777


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|.+++ +|..   .++|++|++++|.++ .+|. ++.+++|++|++++|++
T Consensus       203 ~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          203 DNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             CSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred             CCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcC
Confidence            7777764 3332   135666666666666 5663 66667777777777665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.53  E-value=1.1e-14  Score=125.46  Aligned_cols=96  Identities=28%  Similarity=0.303  Sum_probs=47.8

Q ss_pred             EEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccc-------------
Q 043006           74 VTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWI-------------  140 (205)
Q Consensus        74 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-------------  140 (205)
                      ++.|++++++++ .+|..+.  ++|++|++++|.++ .+|.   .+++|++|++++|.++ .+|..+             
T Consensus        42 l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           42 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL  113 (622)
T ss_dssp             CCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCCCCTTCCEEEECSCCC
T ss_pred             CcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCCCCCCCCEEECcCCcC
Confidence            555556555555 4454443  45555555555555 3443   3445555555555554 344300             


Q ss_pred             ----cCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCc
Q 043006          141 ----GVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID  181 (205)
Q Consensus       141 ----~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~  181 (205)
                          ..+++|+.|++++|++++ +|..   +++|++|++++|.++
T Consensus       114 ~~l~~~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A          114 THLPALPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA  154 (622)
T ss_dssp             CCCCCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             CCCCCCCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC
Confidence                023444555555555442 3321   256666666666666

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.52  E-value=3.8e-15  Score=123.97  Aligned_cols=122  Identities=19%  Similarity=0.213  Sum_probs=54.2

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCC--------------------------------
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQL--------------------------------  119 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l--------------------------------  119 (205)
                      .+++++++++|.+ |.+|++++++++|++|++++|.+.|.+|..++.+                                
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~   89 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL   89 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence            3455555555555 4555555555555555555555555555544443                                


Q ss_pred             -CCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEE
Q 043006          120 -RRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLN  198 (205)
Q Consensus       120 -~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~  198 (205)
                       ++|++|++++|.+++ +|+.   +++|++|++++|.+++ +|..   .++|++|++++|.+++ +| .++++++|++|+
T Consensus        90 ~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~  159 (454)
T 1jl5_A           90 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID  159 (454)
T ss_dssp             CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence             455666666666653 4432   2445555555555542 2211   1466666666666663 56 366666677777


Q ss_pred             ccCCCC
Q 043006          199 LGYNNL  204 (205)
Q Consensus       199 ls~N~l  204 (205)
                      +++|++
T Consensus       160 l~~N~l  165 (454)
T 1jl5_A          160 VDNNSL  165 (454)
T ss_dssp             CCSSCC
T ss_pred             CCCCcC
Confidence            766665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.52  E-value=5.3e-17  Score=120.56  Aligned_cols=126  Identities=26%  Similarity=0.300  Sum_probs=107.4

Q ss_pred             cEEEEEcCCCCccccCCc------cccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCC
Q 043006           73 RVTALNHLDMGLGGTIPS------HLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL  146 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~------~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L  146 (205)
                      .++.++++.+.+.|.+|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            445555555666665555      89999999999999999985 77 8889999999999999999 788888888999


Q ss_pred             CEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCC--hhhcCCCCCCEEEccCCCC
Q 043006          147 RILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP--SGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       147 ~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|++++|.+++ +| .+..+++|++|++++|.++ .+|  ..+..+++|++|++++|++
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCcc
Confidence            999999999996 56 5888999999999999998 444  3688999999999999975

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.52  E-value=2.3e-15  Score=121.64  Aligned_cols=133  Identities=20%  Similarity=0.178  Sum_probs=97.2

Q ss_pred             cEEEEEcCCCCccccCCccccCC-----CCCCEEEccCCcccccccccc----CCC-CCCcEEEcccCcCCCCCCccc--
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNL-----LFLMSLDLTLNNFHGHLAHEL----GQL-RRLRFISFTFNKLSGSIPTWI--  140 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l-----~~L~~L~l~~n~~~~~~p~~~----~~l-~~L~~L~l~~n~l~~~~p~~~--  140 (205)
                      +++.|++++|.+++..+..+..+     ++|++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+  
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            68888999998887666666654     788999999998886555533    333 789999999998885555443  


Q ss_pred             --cC-CCCCCEEEcccccCCCCC----chhccCCC-CCCeeecccCcCcccCChh----hcCC-CCCCEEEccCCCCC
Q 043006          141 --GV-LSKLRILSLCNNSLTGLI----PNSLFNLS-KLEMLDAMFNVIDGSIPSG----IRNL-SNLFNLNLGYNNLQ  205 (205)
Q Consensus       141 --~~-l~~L~~l~l~~n~l~~~~----p~~~~~l~-~L~~L~ls~n~l~~~~p~~----~~~l-~~L~~L~ls~N~l~  205 (205)
                        .. .++|++|++++|.+++..    +..+...+ +|++|++++|.+++..+..    +... ++|++|++++|.|+
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence              33 358999999999888543    33445555 8999999999988665543    3445 58999999999763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.52  E-value=1.4e-13  Score=118.48  Aligned_cols=77  Identities=30%  Similarity=0.335  Sum_probs=59.7

Q ss_pred             CCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEc
Q 043006          120 RRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNL  199 (205)
Q Consensus       120 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~l  199 (205)
                      ++|++|++++|.++ .+|   ..+++|++|++++|.++ .+|.   .+++|+.|++++|.++ .+|..+.++++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            45666666666666 344   34567788888888777 4555   5678999999999998 88999999999999999


Q ss_pred             cCCCCC
Q 043006          200 GYNNLQ  205 (205)
Q Consensus       200 s~N~l~  205 (205)
                      ++|+++
T Consensus       292 ~~N~l~  297 (622)
T 3g06_A          292 EGNPLS  297 (622)
T ss_dssp             CSCCCC
T ss_pred             cCCCCC
Confidence            999874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.50  E-value=1.1e-13  Score=110.99  Aligned_cols=84  Identities=23%  Similarity=0.141  Sum_probs=51.8

Q ss_pred             cEEEEEcCC-CCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           73 RVTALNHLD-MGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        73 ~l~~L~l~~-~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      +++.|++++ |.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|++++..+..+..++ |++|++
T Consensus        32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred             CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence            366666664 666655555666666666666666666665565666666666666666666633223333333 666666


Q ss_pred             ccccCC
Q 043006          152 CNNSLT  157 (205)
Q Consensus       152 ~~n~l~  157 (205)
                      .+|.+.
T Consensus       111 ~~N~~~  116 (347)
T 2ifg_A          111 SGNPLH  116 (347)
T ss_dssp             CSSCCC
T ss_pred             eCCCcc
Confidence            666665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.50  E-value=5.4e-15  Score=119.43  Aligned_cols=134  Identities=21%  Similarity=0.149  Sum_probs=108.4

Q ss_pred             CcEEEEEcCCCCccccCC----ccccCCC-CCCEEEccCCccccccccccCCC-----CCCcEEEcccCcCCCCCCcc--
Q 043006           72 QRVTALNHLDMGLGGTIP----SHLGNLL-FLMSLDLTLNNFHGHLAHELGQL-----RRLRFISFTFNKLSGSIPTW--  139 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p----~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~--  139 (205)
                      ..++.|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+     ++|++|++++|.+++..+..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            459999999999986655    6778888 89999999999997767666664     89999999999999666654  


Q ss_pred             --ccCC-CCCCEEEcccccCCCCCchhcc----C-CCCCCeeecccCcCccc----CChhhcCCC-CCCEEEccCCCCC
Q 043006          140 --IGVL-SKLRILSLCNNSLTGLIPNSLF----N-LSKLEMLDAMFNVIDGS----IPSGIRNLS-NLFNLNLGYNNLQ  205 (205)
Q Consensus       140 --~~~l-~~L~~l~l~~n~l~~~~p~~~~----~-l~~L~~L~ls~n~l~~~----~p~~~~~l~-~L~~L~ls~N~l~  205 (205)
                        +..+ ++|++|++++|.+++..+..+.    . .++|++|++++|.+++.    ++..+...+ +|++|++++|.++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence              4444 8999999999999977665543    3 36999999999999853    344456665 9999999999873

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.48  E-value=1.7e-15  Score=125.53  Aligned_cols=134  Identities=19%  Similarity=0.097  Sum_probs=93.2

Q ss_pred             CcEEEEEcCCCCcccc----CCccccCCCCCCEEEccCCccccccccccC-----CCCCCcEEEcccCcCCCC----CCc
Q 043006           72 QRVTALNHLDMGLGGT----IPSHLGNLLFLMSLDLTLNNFHGHLAHELG-----QLRRLRFISFTFNKLSGS----IPT  138 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~-----~l~~L~~L~l~~n~l~~~----~p~  138 (205)
                      .+++.|++++|.+++.    ++..+..+++|++|++++|.++...+..+.     ..++|++|++++|.+++.    ++.
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  335 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  335 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence            4566777777766643    455566667777777777776543222222     225777788887777644    345


Q ss_pred             cccCCCCCCEEEcccccCCCCCchhccC-----CCCCCeeecccCcCcc----cCChhhcCCCCCCEEEccCCCCC
Q 043006          139 WIGVLSKLRILSLCNNSLTGLIPNSLFN-----LSKLEMLDAMFNVIDG----SIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       139 ~~~~l~~L~~l~l~~n~l~~~~p~~~~~-----l~~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      .+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++    .+|..+..+++|++|++++|+++
T Consensus       336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence            5667788888888888887654444432     6789999999998885    67878888889999999999874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.37  E-value=5.5e-14  Score=116.45  Aligned_cols=131  Identities=21%  Similarity=0.214  Sum_probs=73.2

Q ss_pred             cEEEEEcCCCCccc----cCCccccCCCCCCEEEccCCcccccccccc-----CCCCCCcEEEcccCcCCCCC----Ccc
Q 043006           73 RVTALNHLDMGLGG----TIPSHLGNLLFLMSLDLTLNNFHGHLAHEL-----GQLRRLRFISFTFNKLSGSI----PTW  139 (205)
Q Consensus        73 ~l~~L~l~~~~l~~----~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~----p~~  139 (205)
                      ++++|++++|.++.    .++..+..+++|++|++++|.++...+..+     ...++|++|++++|.+++..    +..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            57788888887773    456677777788888888887764322221     12445777777777666422    334


Q ss_pred             ccCCCCCCEEEcccccCCCCCchhcc-----CCCCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCC
Q 043006          140 IGVLSKLRILSLCNNSLTGLIPNSLF-----NLSKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNN  203 (205)
Q Consensus       140 ~~~l~~L~~l~l~~n~l~~~~p~~~~-----~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~  203 (205)
                      +..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence            44556666666666665533222221     234555555555555431    34444444555555555554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.36  E-value=2.4e-12  Score=103.46  Aligned_cols=124  Identities=19%  Similarity=0.096  Sum_probs=100.1

Q ss_pred             EEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCC-ccccCCCCCCE-EEccc
Q 043006           76 ALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP-TWIGVLSKLRI-LSLCN  153 (205)
Q Consensus        76 ~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-l~l~~  153 (205)
                      +++.++++++ .+|..+.  +.+++|++++|+++...+..|..+++|++|++++|.+.+.+| ..|.+++++++ +.+.+
T Consensus        13 ~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            5678888888 7787663  589999999999994444568999999999999999876666 45788988775 66677


Q ss_pred             ccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006          154 NSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN  202 (205)
Q Consensus       154 n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N  202 (205)
                      |++++..|..|..+++|++|++++|.+.+..+..+....++..+++.++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~  138 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN  138 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc
Confidence            8999777888999999999999999998544445556667788888653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.32  E-value=1.7e-13  Score=111.26  Aligned_cols=134  Identities=19%  Similarity=0.199  Sum_probs=101.4

Q ss_pred             CcEEEEEcCCCCccccCCcc-ccCCCCCCEEEccCCcccccccccc-----CCCCCCcEEEcccCcCCCC----CCcccc
Q 043006           72 QRVTALNHLDMGLGGTIPSH-LGNLLFLMSLDLTLNNFHGHLAHEL-----GQLRRLRFISFTFNKLSGS----IPTWIG  141 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~-l~~l~~L~~L~l~~n~~~~~~p~~~-----~~l~~L~~L~l~~n~l~~~----~p~~~~  141 (205)
                      ..++.|++++|.++..-... ...+++|++|++++|.++......+     ...++|++|++++|.++..    ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            57999999999987542222 2335688999999999875433333     3467899999999998742    345557


Q ss_pred             CCCCCCEEEcccccCCCC----CchhccCCCCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCCCC
Q 043006          142 VLSKLRILSLCNNSLTGL----IPNSLFNLSKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       142 ~l~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ..++|++|++++|.+++.    ++..+...++|+.|++++|.+++.    ++..+...++|++|++++|.|+
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            889999999999998853    355667778999999999999743    4455667789999999999874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.21  E-value=5.9e-13  Score=108.04  Aligned_cols=134  Identities=18%  Similarity=0.197  Sum_probs=101.4

Q ss_pred             CcEEEEEcCCCCccccCCcc----ccC-CCCCCEEEccCCcccccccccc-CCCCCCcEEEcccCcCCCCCCccc-----
Q 043006           72 QRVTALNHLDMGLGGTIPSH----LGN-LLFLMSLDLTLNNFHGHLAHEL-GQLRRLRFISFTFNKLSGSIPTWI-----  140 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~----l~~-l~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~~-----  140 (205)
                      ..++.|++++|.++......    +.. .+.|++|++++|.++......+ ..+++|++|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            56899999999987543322    222 2689999999999875333222 345789999999999974433333     


Q ss_pred             cCCCCCCEEEcccccCCC----CCchhccCCCCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCCCC
Q 043006          141 GVLSKLRILSLCNNSLTG----LIPNSLFNLSKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       141 ~~l~~L~~l~l~~n~l~~----~~p~~~~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ...++|++|++++|.++.    .++..+...++|++|++++|.+.+.    ++..+...++|+.|++++|.|+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            346899999999999974    2445567889999999999999743    3556777889999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.13  E-value=2.5e-12  Score=109.64  Aligned_cols=133  Identities=14%  Similarity=0.104  Sum_probs=79.6

Q ss_pred             cEEEEEcCCCCccccCCccccC-CCCCCEEEcc----CCccccc-----cccccCCCCCCcEEEcccCc--CCCCCCccc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGN-LLFLMSLDLT----LNNFHGH-----LAHELGQLRRLRFISFTFNK--LSGSIPTWI  140 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~-l~~L~~L~l~----~n~~~~~-----~p~~~~~l~~L~~L~l~~n~--l~~~~p~~~  140 (205)
                      +++.|++..+.+++..+..+.. +++|++|+++    .|.+++.     ++..+..+++|++|+++.|.  +++..+..+
T Consensus       379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~  458 (592)
T 3ogk_B          379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI  458 (592)
T ss_dssp             TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred             cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence            4455555444554443333333 5556666664    4444431     22223446666666665322  443333333


Q ss_pred             c-CCCCCCEEEcccccCCC-CCchhccCCCCCCeeecccCcCccc-CChhhcCCCCCCEEEccCCCCC
Q 043006          141 G-VLSKLRILSLCNNSLTG-LIPNSLFNLSKLEMLDAMFNVIDGS-IPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       141 ~-~l~~L~~l~l~~n~l~~-~~p~~~~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      . .+++|++|++++|++++ .++..+..+++|++|++++|.+++. ++.....+++|++|++++|+++
T Consensus       459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            3 36788888888888875 3455567788888888888887654 3444467888888888888764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=99.12  E-value=4.4e-12  Score=98.09  Aligned_cols=80  Identities=21%  Similarity=0.244  Sum_probs=64.8

Q ss_pred             CCCCCCcEEEcccCcCCC--CCCccccCCCCCCEEEcccccCCCCCchhccCCC--CCCeeecccCcCcccCCh------
Q 043006          117 GQLRRLRFISFTFNKLSG--SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLS--KLEMLDAMFNVIDGSIPS------  186 (205)
Q Consensus       117 ~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~--~L~~L~ls~n~l~~~~p~------  186 (205)
                      ..+++|++|++++|.+++  .+|..+..+++|+.|+|++|.+++.  ..+..+.  +|++|++++|.+.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            357899999999999996  4456677899999999999999964  2344344  899999999999987773      


Q ss_pred             -hhcCCCCCCEEE
Q 043006          187 -GIRNLSNLFNLN  198 (205)
Q Consensus       187 -~~~~l~~L~~L~  198 (205)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             367889999887

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.03  E-value=7.1e-11  Score=100.66  Aligned_cols=64  Identities=11%  Similarity=0.111  Sum_probs=27.9

Q ss_pred             CCCCCCEEEccCCccccc----cccccCCCCCCcEEEcccCcCCC----CCCccccCCCCCCEEEcccccCC
Q 043006           94 NLLFLMSLDLTLNNFHGH----LAHELGQLRRLRFISFTFNKLSG----SIPTWIGVLSKLRILSLCNNSLT  157 (205)
Q Consensus        94 ~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~l~l~~n~l~  157 (205)
                      .+++|++|++++|.+++.    ++.....+++|++|++++|.+++    .++..+..+++|++|++++|.+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence            445555555555554432    12222334455555555554441    12222334445555555544443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.98  E-value=2.1e-09  Score=85.40  Aligned_cols=84  Identities=12%  Similarity=0.013  Sum_probs=56.7

Q ss_pred             CCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCC-eeecccCcCcccCChhhcCCCCCCEE
Q 043006          119 LRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLE-MLDAMFNVIDGSIPSGIRNLSNLFNL  197 (205)
Q Consensus       119 l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~-~L~ls~n~l~~~~p~~~~~l~~L~~L  197 (205)
                      +++|+.+++++|.++...+..|.++++|+.+++.+| ++..-+..|.++++|+ .+++.+ .++..-+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            567777777777777333355777777888877776 5544445677777777 777777 5552334567777777777


Q ss_pred             EccCCCC
Q 043006          198 NLGYNNL  204 (205)
Q Consensus       198 ~ls~N~l  204 (205)
                      ++++|.+
T Consensus       303 ~l~~n~i  309 (329)
T 3sb4_A          303 LATGDKI  309 (329)
T ss_dssp             EECSSCC
T ss_pred             EeCCCcc
Confidence            7777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.93  E-value=1e-10  Score=85.74  Aligned_cols=113  Identities=15%  Similarity=0.134  Sum_probs=55.0

Q ss_pred             ccCCCCCCEEEccCC-ccccc----cccccCCCCCCcEEEcccCcCCCC----CCccccCCCCCCEEEcccccCCCC---
Q 043006           92 LGNLLFLMSLDLTLN-NFHGH----LAHELGQLRRLRFISFTFNKLSGS----IPTWIGVLSKLRILSLCNNSLTGL---  159 (205)
Q Consensus        92 l~~l~~L~~L~l~~n-~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~n~l~~~---  159 (205)
                      +...+.|++|++++| .+...    +...+...++|++|++++|.+...    +.+.+...++|++|++++|.+++.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344445555555555 44321    222333445555555555555421    122333345566666666655532   


Q ss_pred             -CchhccCCCCCCeeec--ccCcCccc----CChhhcCCCCCCEEEccCCCC
Q 043006          160 -IPNSLFNLSKLEMLDA--MFNVIDGS----IPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       160 -~p~~~~~l~~L~~L~l--s~n~l~~~----~p~~~~~l~~L~~L~ls~N~l  204 (205)
                       +.+.+...++|++|++  ++|.+...    +...+...++|++|++++|.+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence             2333444555666666  55665522    223344455666666666653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.84  E-value=8.7e-11  Score=100.10  Aligned_cols=131  Identities=12%  Similarity=0.092  Sum_probs=75.6

Q ss_pred             cEEEEEcCCCCccccCCcccc-CCCCCCEEEcc--C----Ccccc-----ccccccCCCCCCcEEEcccCcCCCCCCccc
Q 043006           73 RVTALNHLDMGLGGTIPSHLG-NLLFLMSLDLT--L----NNFHG-----HLAHELGQLRRLRFISFTFNKLSGSIPTWI  140 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~l~--~----n~~~~-----~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~  140 (205)
                      +++.|.+..+.+++.....+. .+++|++|+++  +    +.++.     .++..+..+++|++|++++ .+++..+..+
T Consensus       373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l  451 (594)
T 2p1m_B          373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI  451 (594)
T ss_dssp             TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred             hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence            344444444444433333332 35566666666  3    33331     1111134456677777755 4443333444


Q ss_pred             cC-CCCCCEEEcccccCCCCCchhc-cCCCCCCeeecccCcCcccCCh-hhcCCCCCCEEEccCCCC
Q 043006          141 GV-LSKLRILSLCNNSLTGLIPNSL-FNLSKLEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       141 ~~-l~~L~~l~l~~n~l~~~~p~~~-~~l~~L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~l  204 (205)
                      .. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+. ....+++|+.|++++|++
T Consensus       452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            43 6778888888888765444333 5678888888888888644333 234577888888888865

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=2.5e-09  Score=86.37  Aligned_cols=131  Identities=15%  Similarity=0.205  Sum_probs=86.5

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCcccccccccc--CCCCCCcEEEccc--CcCCCC-----CCccc--
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHEL--GQLRRLRFISFTF--NKLSGS-----IPTWI--  140 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~--~~l~~L~~L~l~~--n~l~~~-----~p~~~--  140 (205)
                      +.++.|++.++.- -.+++ + .+++|++|++..+.+.......+  ..+++|++|+++.  |...+.     +...+  
T Consensus       172 P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~  248 (362)
T 2ra8_A          172 PLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK  248 (362)
T ss_dssp             TTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred             CCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence            5788888877631 12333 3 36788888888887764332233  2678899998753  221111     11122  


Q ss_pred             cCCCCCCEEEcccccCCCCCchhcc---CCCCCCeeecccCcCccc----CChhhcCCCCCCEEEccCCCCC
Q 043006          141 GVLSKLRILSLCNNSLTGLIPNSLF---NLSKLEMLDAMFNVIDGS----IPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       141 ~~l~~L~~l~l~~n~l~~~~p~~~~---~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ..+++|++|++.+|.+++..+..+.   .+++|++|+++.|.+.+.    ++..+.++++|+.|++++|.|+
T Consensus       249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            2478999999999888754433333   578899999999998753    3444456789999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.77  E-value=2.4e-08  Score=79.27  Aligned_cols=103  Identities=18%  Similarity=0.047  Sum_probs=87.1

Q ss_pred             CCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCC-EEEcccccCCCCCchhccCCCCCCee
Q 043006           95 LLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLR-ILSLCNNSLTGLIPNSLFNLSKLEML  173 (205)
Q Consensus        95 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~l~l~~n~l~~~~p~~~~~l~~L~~L  173 (205)
                      +++|+.+++++|+++...+..|..+.+|+.++++.| ++...+..|.++++|+ .+++.+ .++..-+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            679999999999998555567999999999999998 7744457799999999 999998 7775556889999999999


Q ss_pred             ecccCcCcccCChhhcCCCCCCEEEc
Q 043006          174 DAMFNVIDGSIPSGIRNLSNLFNLNL  199 (205)
Q Consensus       174 ~ls~n~l~~~~p~~~~~l~~L~~L~l  199 (205)
                      +++.|.++..-+..|.++++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99999998444457899999998863

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.75  E-value=1.3e-09  Score=92.79  Aligned_cols=131  Identities=13%  Similarity=0.109  Sum_probs=86.0

Q ss_pred             CcEEEEEcCCCCccccCCcccc-CCCCCCEEEccCC-ccccc-cccccCCCCCCcEEEcccCcCCCCCCcccc----CCC
Q 043006           72 QRVTALNHLDMGLGGTIPSHLG-NLLFLMSLDLTLN-NFHGH-LAHELGQLRRLRFISFTFNKLSGSIPTWIG----VLS  144 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~-~l~~L~~L~l~~n-~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~----~l~  144 (205)
                      ++++.|+++++.+++..+..+. .+++|++|++++| .++.. ++.....+++|++|++++|.+++..+..+.    .++
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~  184 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT  184 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence            5688888888887766555554 5778888888888 44422 343344678888888888887655444333    566


Q ss_pred             CCCEEEccccc--CCC-CCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCC
Q 043006          145 KLRILSLCNNS--LTG-LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN  202 (205)
Q Consensus       145 ~L~~l~l~~n~--l~~-~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N  202 (205)
                      +|++|++++|.  ++. .++.....+++|+.|++++|...+.+|..+.++++|+.|+++.+
T Consensus       185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY  245 (594)
T ss_dssp             CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred             cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence            88888888876  221 11222345688888888887322246666777777777775543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.68  E-value=1.7e-08  Score=78.03  Aligned_cols=80  Identities=25%  Similarity=0.271  Sum_probs=64.6

Q ss_pred             cCCCCCCEEEccCCcccc--ccccccCCCCCCcEEEcccCcCCCCCCccccCCC--CCCEEEcccccCCCCCch------
Q 043006           93 GNLLFLMSLDLTLNNFHG--HLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLS--KLRILSLCNNSLTGLIPN------  162 (205)
Q Consensus        93 ~~l~~L~~L~l~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~l~l~~n~l~~~~p~------  162 (205)
                      ..+++|+.|+|++|.+++  .+|..+..+++|+.|++++|.+++.  +.+..+.  +|++|++++|++.+.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            347899999999999997  4556667899999999999999854  2333344  999999999999986662      


Q ss_pred             -hccCCCCCCeee
Q 043006          163 -SLFNLSKLEMLD  174 (205)
Q Consensus       163 -~~~~l~~L~~L~  174 (205)
                       .+..+|+|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             366889999987

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.64  E-value=4.8e-09  Score=76.75  Aligned_cols=110  Identities=16%  Similarity=0.125  Sum_probs=86.4

Q ss_pred             CcEEEEEcCCC-Ccccc----CCccccCCCCCCEEEccCCccccc----cccccCCCCCCcEEEcccCcCCCC----CCc
Q 043006           72 QRVTALNHLDM-GLGGT----IPSHLGNLLFLMSLDLTLNNFHGH----LAHELGQLRRLRFISFTFNKLSGS----IPT  138 (205)
Q Consensus        72 ~~l~~L~l~~~-~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~  138 (205)
                      ..+++|++++| .+...    +...+...+.|++|++++|.+...    +...+...++|++|++++|.+...    +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            67999999999 88642    445566778999999999998742    333445568899999999999843    346


Q ss_pred             cccCCCCCCEEEc--ccccCCCC----CchhccCCCCCCeeecccCcCc
Q 043006          139 WIGVLSKLRILSL--CNNSLTGL----IPNSLFNLSKLEMLDAMFNVID  181 (205)
Q Consensus       139 ~~~~l~~L~~l~l--~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~  181 (205)
                      .+...++|++|++  ++|.++..    +.+.+...++|++|++++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            6777889999999  88999853    3344556689999999999885

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.50  E-value=7.7e-08  Score=77.59  Aligned_cols=131  Identities=15%  Similarity=0.067  Sum_probs=88.2

Q ss_pred             CcEEEEEcCCCCcc---------ccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCcccc-
Q 043006           72 QRVTALNHLDMGLG---------GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIG-  141 (205)
Q Consensus        72 ~~l~~L~l~~~~l~---------~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-  141 (205)
                      ++++.|.+.+....         +.++..+..++.|+.|++++|.-. .++. + .+++|+.|++..+.+.......+. 
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence            46778877655321         234455677889999999887411 3443 3 378999999998887643333343 


Q ss_pred             -CCCCCCEEEccc--ccCCCC-----Cchhc--cCCCCCCeeecccCcCcccCChhhc---CCCCCCEEEccCCCCC
Q 043006          142 -VLSKLRILSLCN--NSLTGL-----IPNSL--FNLSKLEMLDAMFNVIDGSIPSGIR---NLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       142 -~l~~L~~l~l~~--n~l~~~-----~p~~~--~~l~~L~~L~ls~n~l~~~~p~~~~---~l~~L~~L~ls~N~l~  205 (205)
                       .+++|++|+|+.  |...+.     +...+  ..+++|+.|++.+|.+.+..+..+.   .+++|++|+++.|.++
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT  292 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence             789999999863  222211     11222  2579999999999998755444443   5789999999999873

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.34  E-value=2.1e-07  Score=67.21  Aligned_cols=92  Identities=11%  Similarity=0.019  Sum_probs=67.5

Q ss_pred             CCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCc-CCCCCCccccCC----CCCCEEEcccc-cCCCCCc
Q 043006           88 IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNK-LSGSIPTWIGVL----SKLRILSLCNN-SLTGLIP  161 (205)
Q Consensus        88 ~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~l~l~~n-~l~~~~p  161 (205)
                      +|.....-..|++||++++.++..--..+..+++|++|++++|. ++...-..++.+    ++|++|++++| ++++.--
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            44433223479999999999886544567889999999999985 664333445554    47999999998 4875444


Q ss_pred             hhccCCCCCCeeecccCc
Q 043006          162 NSLFNLSKLEMLDAMFNV  179 (205)
Q Consensus       162 ~~~~~l~~L~~L~ls~n~  179 (205)
                      ..+..+++|+.|++++|.
T Consensus       133 ~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          133 IALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHGGGCTTCCEEEEESCT
T ss_pred             HHHhcCCCCCEEECCCCC
Confidence            556788999999999985

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.28  E-value=4.1e-06  Score=68.42  Aligned_cols=87  Identities=14%  Similarity=-0.009  Sum_probs=45.4

Q ss_pred             cccCCCCCCcEEEcccCcCC-----CCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhh
Q 043006          114 HELGQLRRLRFISFTFNKLS-----GSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGI  188 (205)
Q Consensus       114 ~~~~~l~~L~~L~l~~n~l~-----~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~  188 (205)
                      ..|..+++|+.+.+.+|.+.     ...+..|..+++|+.+++.+ .++..-...|.++.+|+.+.+..| ++..-+..|
T Consensus       265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF  342 (401)
T 4fdw_A          265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF  342 (401)
T ss_dssp             TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred             hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence            34555666666666555443     12234455666666666652 344333344555666666666443 431223345


Q ss_pred             cCCCCCCEEEccCCC
Q 043006          189 RNLSNLFNLNLGYNN  203 (205)
Q Consensus       189 ~~l~~L~~L~ls~N~  203 (205)
                      .++ +|+.+++++|.
T Consensus       343 ~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          343 NNT-GIKEVKVEGTT  356 (401)
T ss_dssp             SSS-CCCEEEECCSS
T ss_pred             CCC-CCCEEEEcCCC
Confidence            556 66666666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.27  E-value=6.8e-06  Score=67.10  Aligned_cols=125  Identities=11%  Similarity=0.067  Sum_probs=63.6

Q ss_pred             EEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccc
Q 043006           74 VTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCN  153 (205)
Q Consensus        74 l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~  153 (205)
                      ++.+.+.. .+...-+..|.++++|+.++++.|.++ .++.......+|+.+.+..+ ++......|.++++|+.+++..
T Consensus       159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            45555543 344333345666666777777666665 23322222355555555432 3322223444555555555543


Q ss_pred             c---------------------cCCCCCchhccCCCCCCeeecccCcCc-----ccCChhhcCCCCCCEEEccC
Q 043006          154 N---------------------SLTGLIPNSLFNLSKLEMLDAMFNVID-----GSIPSGIRNLSNLFNLNLGY  201 (205)
Q Consensus       154 n---------------------~l~~~~p~~~~~l~~L~~L~ls~n~l~-----~~~p~~~~~l~~L~~L~ls~  201 (205)
                      |                     .++..-+..|..+++|+.+++.+|.+.     ..-+..|.++++|+.+++..
T Consensus       236 ~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~  309 (401)
T 4fdw_A          236 NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE  309 (401)
T ss_dssp             TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred             CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence            2                     233222345566677777777666553     12233466777777777663

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.25  E-value=4e-07  Score=65.77  Aligned_cols=86  Identities=13%  Similarity=0.134  Sum_probs=65.1

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCc-cccccccccCCC----CCCcEEEcccCc-CCCCCCccccCCCC
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNN-FHGHLAHELGQL----RRLRFISFTFNK-LSGSIPTWIGVLSK  145 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l----~~L~~L~l~~n~-l~~~~p~~~~~l~~  145 (205)
                      .++++|+++++.++..--..+..+++|++|+++++. ++..--..+..+    ++|++|++++|. ++..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            579999999999876544557889999999999985 654322334443    479999999975 77544456778999


Q ss_pred             CCEEEccccc-CC
Q 043006          146 LRILSLCNNS-LT  157 (205)
Q Consensus       146 L~~l~l~~n~-l~  157 (205)
                      |++|+++++. ++
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            9999999984 55

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.63  E-value=1.2e-05  Score=58.97  Aligned_cols=14  Identities=43%  Similarity=0.581  Sum_probs=7.1

Q ss_pred             CCCCEEEcccccCC
Q 043006          144 SKLRILSLCNNSLT  157 (205)
Q Consensus       144 ~~L~~l~l~~n~l~  157 (205)
                      +.|++|+|++|.++
T Consensus        98 ~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           98 PSLRVLNVESNFLT  111 (197)
T ss_dssp             SSCCEEECCSSBCC
T ss_pred             CccCeEecCCCcCC
Confidence            44555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.56  E-value=0.00051  Score=55.56  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=33.4

Q ss_pred             ccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCC
Q 043006          115 ELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNL  194 (205)
Q Consensus       115 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L  194 (205)
                      .|..+.+|+.+.+..+ ++......|.++.+|+.+.+..+ ++..-...|.++.+|+.+++.++...  + ..+....+|
T Consensus       306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~-~~~~~~~~L  380 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--W-NAISTDSGL  380 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--H-HTCBCCCCC
T ss_pred             eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--h-hhhhccCCC
Confidence            3444555555555432 33122234555555555555432 33222344555555555555554332  1 233444455


Q ss_pred             CEEEccCC
Q 043006          195 FNLNLGYN  202 (205)
Q Consensus       195 ~~L~ls~N  202 (205)
                      +.+.+..|
T Consensus       381 ~~i~i~~~  388 (394)
T 4gt6_A          381 QNLPVAPG  388 (394)
T ss_dssp             --------
T ss_pred             CEEEeCCC
Confidence            55554444

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.42  E-value=0.00032  Score=47.92  Aligned_cols=57  Identities=26%  Similarity=0.216  Sum_probs=39.1

Q ss_pred             cEEEcccCcCC-CCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCc
Q 043006          123 RFISFTFNKLS-GSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVID  181 (205)
Q Consensus       123 ~~L~l~~n~l~-~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~  181 (205)
                      ..++.+++.++ ..+|..+.  +++++|+|++|+++..-+..|..+++|+.|++++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36677777765 35554322  36888888888888554556677888888888888764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.40  E-value=0.0014  Score=53.00  Aligned_cols=109  Identities=13%  Similarity=0.171  Sum_probs=81.2

Q ss_pred             ccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCC
Q 043006           90 SHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSK  169 (205)
Q Consensus        90 ~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~  169 (205)
                      ..|.....|+.+.+..+..+ .-...|..+..|+.+.+.. .++......|.++.+|+.+++..+ ++..-...|.++.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            35667778888888765543 3345678889999999964 455233467889999999999765 55344567889999


Q ss_pred             CCeeecccCcCcccCCh-hhcCCCCCCEEEccCCC
Q 043006          170 LEMLDAMFNVIDGSIPS-GIRNLSNLFNLNLGYNN  203 (205)
Q Consensus       170 L~~L~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~  203 (205)
                      |+.+.+..+ ++ .++. .|.++++|+.+++.+|.
T Consensus       336 L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          336 LERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             CCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCH
T ss_pred             CCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCce
Confidence            999999765 55 5554 68899999999998763

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.28  E-value=0.0022  Score=51.78  Aligned_cols=84  Identities=11%  Similarity=0.006  Sum_probs=54.9

Q ss_pred             ccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCC-hhhcCCCC
Q 043006          115 ELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP-SGIRNLSN  193 (205)
Q Consensus       115 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~~  193 (205)
                      .|..+.+|+.+.+..+ ++......|.++.+|+.+++..+ ++..-...|.++.+|+.+++..+ ++ .++ ..|.++.+
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~  367 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCIN  367 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCC
Confidence            3556677777777654 44233456777888888888643 55333456777888888888766 55 343 45778888


Q ss_pred             CCEEEccCC
Q 043006          194 LFNLNLGYN  202 (205)
Q Consensus       194 L~~L~ls~N  202 (205)
                      |+.+++..+
T Consensus       368 L~~i~lp~~  376 (394)
T 4fs7_A          368 LKKVELPKR  376 (394)
T ss_dssp             CCEEEEEGG
T ss_pred             CCEEEECCC
Confidence            888877554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.26  E-value=0.00073  Score=46.13  Aligned_cols=56  Identities=23%  Similarity=0.189  Sum_probs=33.9

Q ss_pred             EEEcCCCCcc-ccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCC
Q 043006           76 ALNHLDMGLG-GTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLS  133 (205)
Q Consensus        76 ~L~l~~~~l~-~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~  133 (205)
                      .++.++++++ ..+|..+.  ..+++|+|++|.++..-+..|..+++|++|++.+|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666665 34554332  25777777777777433444566667777777766553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.25  E-value=0.002  Score=51.62  Aligned_cols=105  Identities=14%  Similarity=0.126  Sum_probs=52.0

Q ss_pred             ccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCC
Q 043006           92 LGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLE  171 (205)
Q Consensus        92 l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~  171 (205)
                      +.....|+.+.+..+ ++..-...|..+.+|+.+.+..+ +.......|..+++|+.+.+.++.++..-...|.++.+|+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~  313 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS  313 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence            344445555555443 22122233445555555555432 3312223455666666666665555533334555666666


Q ss_pred             eeecccCcCcccCC-hhhcCCCCCCEEEcc
Q 043006          172 MLDAMFNVIDGSIP-SGIRNLSNLFNLNLG  200 (205)
Q Consensus       172 ~L~ls~n~l~~~~p-~~~~~l~~L~~L~ls  200 (205)
                      .+.+..+ ++ .++ .+|.++++|+.+.+.
T Consensus       314 ~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          314 SVTLPTA-LK-TIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred             EEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence            6666543 33 333 245556666555553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.07  E-value=0.00028  Score=51.75  Aligned_cols=85  Identities=11%  Similarity=0.090  Sum_probs=57.0

Q ss_pred             CCCCCcEEEcccC-cCCC----CCCccccCCCCCCEEEcccccCCC----CCchhccCCCCCCeeecccCcCccc----C
Q 043006          118 QLRRLRFISFTFN-KLSG----SIPTWIGVLSKLRILSLCNNSLTG----LIPNSLFNLSKLEMLDAMFNVIDGS----I  184 (205)
Q Consensus       118 ~l~~L~~L~l~~n-~l~~----~~p~~~~~l~~L~~l~l~~n~l~~----~~p~~~~~l~~L~~L~ls~n~l~~~----~  184 (205)
                      .-+.|++|++++| .+..    .+.+.+..-+.|+.|+|++|.+..    .+.+.+..-+.|+.|+++.|.|...    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3455666666664 5532    123445556778888888888873    3344555568899999999999743    3


Q ss_pred             ChhhcCCCCCCEEEccCC
Q 043006          185 PSGIRNLSNLFNLNLGYN  202 (205)
Q Consensus       185 p~~~~~l~~L~~L~ls~N  202 (205)
                      ...+..-+.|+.|+|++|
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence            345666677999999865

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.97  E-value=0.0015  Score=52.79  Aligned_cols=102  Identities=8%  Similarity=-0.020  Sum_probs=75.1

Q ss_pred             cccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCC
Q 043006           91 HLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKL  170 (205)
Q Consensus        91 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L  170 (205)
                      .+.....|+.+.+..+ ++..-...|..+.+|+.+++..+ ++......|.++++|+.+++..+ ++..-...|.++++|
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            3556677888888654 44333556889999999999754 66344577999999999999876 664445678899999


Q ss_pred             CeeecccCcCcccCChhhcCCCCCCEE
Q 043006          171 EMLDAMFNVIDGSIPSGIRNLSNLFNL  197 (205)
Q Consensus       171 ~~L~ls~n~l~~~~p~~~~~l~~L~~L  197 (205)
                      +.+++..+ ++ .+...|.++++|+.+
T Consensus       369 ~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          369 KKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             CEEEECCC-CE-EhhheecCCCCCcEE
Confidence            99999865 33 455568888887754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.95  E-value=0.0056  Score=48.99  Aligned_cols=115  Identities=13%  Similarity=0.007  Sum_probs=77.8

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      .++.+.+..+ ++..-...+.....|+.+.+..+ ++..-...|..+.+|+.+.+..+.++..-...|.++.+|+.+.+.
T Consensus       241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            3455555443 33233445677788999998654 442334568889999999999888884445779999999999997


Q ss_pred             cccCCCCCchhccCCCCCCeeecccCcCcccCC-hhhcCCC
Q 043006          153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIP-SGIRNLS  192 (205)
Q Consensus       153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p-~~~~~l~  192 (205)
                      .+ ++..-...|.++.+|+.+.+..+ ++ .+. .+|.++.
T Consensus       319 ~~-l~~I~~~aF~~C~~L~~i~ip~~-v~-~I~~~aF~~c~  356 (379)
T 4h09_A          319 TA-LKTIQVYAFKNCKALSTISYPKS-IT-LIESGAFEGSS  356 (379)
T ss_dssp             TT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTSS
T ss_pred             cc-ccEEHHHHhhCCCCCCEEEECCc-cC-EEchhHhhCCC
Confidence            54 55333467888999999988654 44 333 3454443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.001
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 4e-10
 Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 9/181 (4%)

Query: 30  TDQSALLAFKAHVVDYRSALANNWAMSSPICN--WIGISC--GLPHQRVTALNHLDMGLG 85
            D+ ALL  K  + +      ++W  ++  CN  W+G+ C       RV  L+   + L 
Sbjct: 6   QDKQALLQIKKDLGN--PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63

Query: 86  G--TIPSHLGNLLFLMSLDLTLN-NFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGV 142
               IPS L NL +L  L +    N  G +   + +L +L ++  T   +SG+IP ++  
Sbjct: 64  KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123

Query: 143 LSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202
           +  L  L    N+L+G +P S+ +L  L  +    N I G+IP    + S LF       
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

Query: 203 N 203
           N
Sbjct: 184 N 184

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 130 NKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN 178
           N++ G++P  +  L  L  L++  N+L G IP    NL + ++     N
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 47.1 bits (110), Expect = 4e-07
 Identities = 32/167 (19%), Positives = 47/167 (28%), Gaps = 8/167 (4%)

Query: 38  FKAHVVDYRSALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLF 97
             +           N  +S  I +  G    L      + N L   +  T  +       
Sbjct: 145 ISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----- 198

Query: 98  LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLT 157
            ++      N     A  L    +                  +G+   L  L L NN + 
Sbjct: 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257

Query: 158 GLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
           G +P  L  L  L  L+  FN + G IP G  NL          N  
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.9 bits (107), Expect = 9e-07
 Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 1/111 (0%)

Query: 51  NNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHG 110
             +   S        S      + T   HL           +G    L  LDL  N  +G
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG 258

Query: 111 HLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIP 161
            L   L QL+ L  ++ +FN L G IP   G L +  + +  NN      P
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 7/156 (4%)

Query: 47  SALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLN 106
             LA+   ++        IS   P   +T L  L +G            L  ++      
Sbjct: 235 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 294

Query: 107 NFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFN 166
           N    ++     L+ L +++  FN +S   P  +  L+KL+ L   NN ++    +SL N
Sbjct: 295 NQLEDISPI-SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLAN 349

Query: 167 LSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYN 202
           L+ +  L A  N I    P  + NL+ +  L L   
Sbjct: 350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 27/177 (15%)

Query: 50  ANNWAMSSPICNWIGISCGLPHQRVTALNHLD-MGLGGTIPSHLGNLLFLMSLDLTLNNF 108
           A    + S I     IS   P   +T L+ L   G        L +L  L  LDL  N  
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI 253

Query: 109 HGHLAHELGQLRRLRFISFTFNKLSGSIP--------------------TWIGVLSKLRI 148
                  L  L +L  +    N++S   P                    + I  L  L  
Sbjct: 254 SNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 149 LSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           L+L  N+++ + P  + +L+KL+ L    N +  S  S + NL+N+  L+ G+N + 
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKV--SDVSSLANLTNINWLSAGHNQIS 364

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 3e-08
 Identities = 30/157 (19%), Positives = 46/157 (29%)

Query: 47  SALANNWAMSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLN 106
             L   W  S+ +      +              +  L    P+    L  L +L L   
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

Query: 107 NFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFN 166
                       L  L+++    N L          L  L  L L  N ++ +   +   
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

Query: 167 LSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNN 203
           L  L+ L    N +    P   R+L  L  L L  NN
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 6e-04
 Identities = 26/175 (14%), Positives = 43/175 (24%), Gaps = 28/175 (16%)

Query: 55  MSSPICNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAH 114
           +       +G         +  L   D  L         +L  L  L L  N        
Sbjct: 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171

Query: 115 ELGQLRRLRFISFTFNKLSGSIPTWIGVLS------------------------KLRILS 150
               L  L  +    N+++   P     L                          L+ L 
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 151 LCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           L +N             + L+      + +  S+P     L+      L  N+LQ
Sbjct: 232 LNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAANDLQ 282

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 135 SIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNL 194
            +P  +       +L L NN +T +      NL  L  L  + N I    P     L  L
Sbjct: 24  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 195 FNLNLGYNNLQ 205
             L L  N L+
Sbjct: 82  ERLYLSKNQLK 92

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 22/107 (20%), Positives = 36/107 (33%)

Query: 98  LMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLT 157
              LDL  N        +   L+ L  +    NK+S   P     L KL  L L  N L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 158 GLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL 204
            L       L +L + +     +  S+ +G+  +  +        + 
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 139

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 5/148 (3%)

Query: 60  CNWIGISCGLPHQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDL--TLNNFHGHLAHELG 117
            N +        + +  L   +  +     S    L  ++ ++L        G       
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 118 QLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMF 177
            +++L +I      ++ +IP   G+   L  L L  N +T +   SL  L+ L  L   F
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 178 NVIDGSIPSGIRNLSNLFNLNLGYNNLQ 205
           N I       + N  +L  L+L  N L 
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLV 232

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 5/101 (4%)

Query: 100 SLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTW-IGVLSKLRILSLCNNSLTG 158
           +LDLT  N H  +    G+L     I+F   +     P        +++ + L N+ +  
Sbjct: 4   TLDLTGKNLHPDV---TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 159 -LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLN 198
             +   L   SKL+ L      +   I + +   SNL  LN
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 127 FTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS 186
           +  N  S  I +   +   L  L++ NN L  L         +LE L A FN +   +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHL-AEVPE 321

Query: 187 GIRNLSNLFNLNLGYNNLQ 205
             +NL     L++ YN L+
Sbjct: 322 LPQNLK---QLHVEYNPLR 337

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 14/76 (18%), Positives = 18/76 (23%)

Query: 99  MSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTG 158
           + L L  N             +         N L           S   IL +    +  
Sbjct: 156 VILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 215

Query: 159 LIPNSLFNLSKLEMLD 174
           L    L NL KL    
Sbjct: 216 LPSYGLENLKKLRARS 231

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 114 HELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEML 173
             L  L +L  +    NK+S   P  +  L  L  + L NN ++ + P  L N S L ++
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

Query: 174 D 174
            
Sbjct: 223 T 223

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 105 LNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSL 164
           L      + +             +      S  T +  LSKL  L   +N ++ + P  L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 165 FNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNL 199
            +L  L  +    N I    P  + N SNLF + L
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 87  TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKL 146
           T+  HL  LL +  LDL+ N         L  LR L  +  + N L            +L
Sbjct: 11  TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVDGVANLP--RL 67

Query: 147 RILSLCNNSLTGL-IPNSLFNLSKLEMLDAMFN---VIDGSIPSGIRNLSNLFNL 197
           + L LCNN L        L +  +L +L+   N     +G        L ++ ++
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.8
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.78
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.7
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.7
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.54
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.54
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.49
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.48
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.47
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.47
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.41
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.4
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.36
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.12
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.03
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.02
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.0
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.97
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.86
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.75
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.69
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.67
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.38
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.16
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.79
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.64
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.01

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=3.2e-31  Score=208.83  Aligned_cols=177  Identities=28%  Similarity=0.487  Sum_probs=161.5

Q ss_pred             CCChhhHHHHHHHHhccccCCCCcCCCCCCCCCCC--cccceeeCCCC--CcEEEEEcCCCCccc--cCCccccCCCCCC
Q 043006           26 KNITTDQSALLAFKAHVVDYRSALANNWAMSSPIC--NWIGISCGLPH--QRVTALNHLDMGLGG--TIPSHLGNLLFLM   99 (205)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c--~w~gv~c~~~~--~~l~~L~l~~~~l~~--~~p~~l~~l~~L~   99 (205)
                      -|.++|++||++||+.+.++  ..+.+|..++++|  .|.||+|+...  .+|+.|+++++++.|  .+|+++.++++|+
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~--~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~   79 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNP--TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC--GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCCHHHHHHHHHHHHHCCCC--CcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccc
Confidence            38899999999999999743  3588999888999  59999998643  489999999999987  5899999999999


Q ss_pred             EEEccC-CccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccC
Q 043006          100 SLDLTL-NNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN  178 (205)
Q Consensus       100 ~L~l~~-n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n  178 (205)
                      +|++++ |+++|.+|..++++++|++|++++|++.+..|..+..+.+|+++++++|.+.+.+|..+..++.++.+++++|
T Consensus        80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_          80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccc
Confidence            999997 8999999999999999999999999999888888999999999999999999999999999999999999999


Q ss_pred             cCcccCChhhcCCCCC-CEEEccCCCC
Q 043006          179 VIDGSIPSGIRNLSNL-FNLNLGYNNL  204 (205)
Q Consensus       179 ~l~~~~p~~~~~l~~L-~~L~ls~N~l  204 (205)
                      .+.|.+|..+..+..+ +.+++++|++
T Consensus       160 ~l~~~ip~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         160 RISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ccccccccccccccccccccccccccc
Confidence            9999999999888775 8899998875

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=3.1e-19  Score=130.45  Aligned_cols=126  Identities=25%  Similarity=0.322  Sum_probs=98.7

Q ss_pred             EEEcCCCCccccCCccccCCCCCCEEEccCCcccccc-ccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccc
Q 043006           76 ALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHL-AHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNN  154 (205)
Q Consensus        76 ~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n  154 (205)
                      .++.++++++ .+|..+.  +.+++|++++|.++..+ +..|..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            3455566665 5676553  57888888888887544 455678888888888888888777778888888888888888


Q ss_pred             cCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          155 SLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       155 ~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++++..|..|.++++|++|++++|.|++..|..|..+++|+++++++|.+
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            88876677788888888888888888855566678888888888888875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.78  E-value=1.3e-19  Score=141.89  Aligned_cols=133  Identities=30%  Similarity=0.388  Sum_probs=90.7

Q ss_pred             CcEEEEEcCC-CCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLD-MGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~-~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      ..++.|++++ |.+.|.+|+.+.++++|++|++++|++.+..+..+..+..|++++++.|.+.+.+|..+..++.+++++
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~  155 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence            6788999986 789999999999999999999999888765554444444444444444444434443343333333333


Q ss_pred             ccccc------------------------------------------------------------------------CCC
Q 043006          151 LCNNS------------------------------------------------------------------------LTG  158 (205)
Q Consensus       151 l~~n~------------------------------------------------------------------------l~~  158 (205)
                      +++|.                                                                        +++
T Consensus       156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~  235 (313)
T d1ogqa_         156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF  235 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            33333                                                                        322


Q ss_pred             CCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          159 LIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       159 ~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      .+ ..+..+++|+.|++++|+++|.+|..++++++|++|++++|+|+
T Consensus       236 ~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         236 DL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             BG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            22 23445567888888889998889988888999999999988763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=9.5e-19  Score=127.83  Aligned_cols=125  Identities=22%  Similarity=0.263  Sum_probs=109.2

Q ss_pred             CCCcccceeeCCCC---------CcEEEEEcCCCCccccC-CccccCCCCCCEEEccCCccccccccccCCCCCCcEEEc
Q 043006           58 PICNWIGISCGLPH---------QRVTALNHLDMGLGGTI-PSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISF  127 (205)
Q Consensus        58 ~~c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  127 (205)
                      ..|.|..|.|....         ..++.|++++|.+++.+ +..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus         6 C~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           6 CHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             SEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CEEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            44678888886322         46899999999998755 456788999999999999999888888999999999999


Q ss_pred             ccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcc
Q 043006          128 TFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDG  182 (205)
Q Consensus       128 ~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~  182 (205)
                      ++|++++..|..|.++++|++|+|++|++++..|..|..+++|+++++++|.+..
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            9999996667789999999999999999998777889999999999999998863

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.5e-17  Score=126.03  Aligned_cols=130  Identities=27%  Similarity=0.201  Sum_probs=87.2

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      .++.|++++|.+.+ .+..+..+++|++|++++|.+....+..+..+.+++++++++|.++...+..+..+++++.++++
T Consensus        78 ~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_          78 VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             TCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cccccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccc
Confidence            34444444444432 23344444555555555555443333444555566666666666664444556677888888888


Q ss_pred             cccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++
T Consensus       157 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             cccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            88888777777888899999999999988 8888888888899999998875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.74  E-value=2.4e-17  Score=128.22  Aligned_cols=149  Identities=20%  Similarity=0.180  Sum_probs=102.7

Q ss_pred             CCCCCcccceeeCCC---------CCcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEE
Q 043006           56 SSPICNWIGISCGLP---------HQRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFIS  126 (205)
Q Consensus        56 ~~~~c~w~gv~c~~~---------~~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~  126 (205)
                      ....|.|.++.|...         ...++.|++++|.++...+..|..++.|++|++++|.+....|..|..++.|++++
T Consensus         6 ~~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_           6 FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             TTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence            344577888888642         15688899999988754445688888888888888888865566777778888888


Q ss_pred             cccCcCCCC-----------------------------------------------------------------------
Q 043006          127 FTFNKLSGS-----------------------------------------------------------------------  135 (205)
Q Consensus       127 l~~n~l~~~-----------------------------------------------------------------------  135 (205)
                      +++|+++..                                                                       
T Consensus        86 l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          86 LSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             CCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             ccCCccCcCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            777765411                                                                       


Q ss_pred             ---------------------CCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCC
Q 043006          136 ---------------------IPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNL  194 (205)
Q Consensus       136 ---------------------~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L  194 (205)
                                           .+..+..++.+++|++++|.+++..+..+..+++|++|++++|.++ .+|..+.++++|
T Consensus       166 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L  244 (305)
T d1xkua_         166 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI  244 (305)
T ss_dssp             CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             CcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCC
Confidence                                 1112222333455555555555444555666778888888888887 677778888888


Q ss_pred             CEEEccCCCCC
Q 043006          195 FNLNLGYNNLQ  205 (205)
Q Consensus       195 ~~L~ls~N~l~  205 (205)
                      ++|++++|+|+
T Consensus       245 ~~L~Ls~N~i~  255 (305)
T d1xkua_         245 QVVYLHNNNIS  255 (305)
T ss_dssp             CEEECCSSCCC
T ss_pred             CEEECCCCccC
Confidence            88888888764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1e-17  Score=129.25  Aligned_cols=133  Identities=22%  Similarity=0.188  Sum_probs=116.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+.+..+..+.....|+.+++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|+++++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            57889999999987666777788889999999999998655667888899999999999998666778889999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|++++..|..|..+++|++|++++|++.+..|..++.+++|++|++++|++
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             hhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            99999988889999999999999999999966667788999999999999975

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.6e-16  Score=121.39  Aligned_cols=131  Identities=27%  Similarity=0.215  Sum_probs=90.1

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++|.+++..+..|.++++|++|++++|.++ .+|. +..+++|++|++++|+++ ..+..+..+++|+++++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-cccccccccccccccccc-ccccccccccccccccc
Confidence            45777777777777555556777777777777777776 3442 456667777777777666 34444555555555555


Q ss_pred             ------------------------ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 ------------------------CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ------------------------~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                                              ++|.+++..+..+..+++++.+++++|++++..+..+..+++|++|++++|+|+
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence                                    455555444455566788999999999998666667888999999999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=6.6e-17  Score=109.82  Aligned_cols=117  Identities=26%  Similarity=0.346  Sum_probs=95.8

Q ss_pred             EEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccccc
Q 043006           76 ALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNS  155 (205)
Q Consensus        76 ~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~  155 (205)
                      .|++++|+++ .++ .+..++.|++|++++|.++ .+|..+..+++|++|++++|.++ .+| .+..+++|+++++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            6899999998 455 4889999999999999998 67888999999999999999998 555 48899999999999999


Q ss_pred             CCCCC-chhccCCCCCCeeecccCcCccc--CChh-hcCCCCCCEE
Q 043006          156 LTGLI-PNSLFNLSKLEMLDAMFNVIDGS--IPSG-IRNLSNLFNL  197 (205)
Q Consensus       156 l~~~~-p~~~~~l~~L~~L~ls~n~l~~~--~p~~-~~~l~~L~~L  197 (205)
                      ++... ...+..+++|+.+++++|.+++.  .+.. ...+++|+.+
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            98542 25678899999999999999732  2232 3457777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=2.1e-16  Score=107.26  Aligned_cols=101  Identities=25%  Similarity=0.331  Sum_probs=88.5

Q ss_pred             CEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccC
Q 043006           99 MSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFN  178 (205)
Q Consensus        99 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n  178 (205)
                      ++|++++|+++ .++ .+..+++|++|++++|.++ .+|+.+..+++|++|++++|.+++ +| .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            57999999998 555 4889999999999999998 788889999999999999999994 45 4889999999999999


Q ss_pred             cCcccCC--hhhcCCCCCCEEEccCCCCC
Q 043006          179 VIDGSIP--SGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       179 ~l~~~~p--~~~~~l~~L~~L~ls~N~l~  205 (205)
                      +++ .+|  ..++.+++|+++++++|+++
T Consensus        76 ~i~-~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQ-QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCC-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccC-CCCCchhhcCCCCCCEEECCCCcCC
Confidence            998 444  46788999999999999863

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-16  Score=112.91  Aligned_cols=123  Identities=22%  Similarity=0.204  Sum_probs=103.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .++++|++++|.++ .++..+..+++|++|++++|.++ .++ .+..+++|++|++++|+++...+..+..+++|++|++
T Consensus        18 ~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          18 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            56899999999998 55766678899999999999998 554 5889999999999999999444444678999999999


Q ss_pred             ccccCCCCCc--hhccCCCCCCeeecccCcCcccCCh----hhcCCCCCCEEEc
Q 043006          152 CNNSLTGLIP--NSLFNLSKLEMLDAMFNVIDGSIPS----GIRNLSNLFNLNL  199 (205)
Q Consensus       152 ~~n~l~~~~p--~~~~~l~~L~~L~ls~n~l~~~~p~----~~~~l~~L~~L~l  199 (205)
                      ++|.++. ++  ..+..+++|+++++++|.++ ..|.    .++.+++|++||-
T Consensus        95 ~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          95 TNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccccc-cccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            9999984 34  45788999999999999997 5664    4788999999984

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.3e-15  Score=117.16  Aligned_cols=122  Identities=23%  Similarity=0.206  Sum_probs=106.9

Q ss_pred             ccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchh
Q 043006           84 LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNS  163 (205)
Q Consensus        84 l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~  163 (205)
                      +....|..+.++++|++|++++|.+....+..+..+.+|+++++++|.+++..+..+..+++|++|++++|++++..+..
T Consensus        93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~  172 (284)
T d1ozna_          93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence            33334667888999999999999998666677888999999999999999555677889999999999999999777788


Q ss_pred             ccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          164 LFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       164 ~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      |..+++|+++++++|++++..|..|.++++|++|++++|.++
T Consensus       173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             hccccccchhhhhhccccccChhHhhhhhhcccccccccccc
Confidence            899999999999999999888999999999999999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.9e-16  Score=112.41  Aligned_cols=110  Identities=19%  Similarity=0.148  Sum_probs=94.5

Q ss_pred             cccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCC
Q 043006           91 HLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKL  170 (205)
Q Consensus        91 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L  170 (205)
                      .+.+...+++|++++|+++ .++..+..+++|+.|++++|.++ .++ .+..+++|++|++++|.++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            4567778999999999998 56766678999999999999998 554 58899999999999999996555556789999


Q ss_pred             CeeecccCcCcccCCh--hhcCCCCCCEEEccCCCC
Q 043006          171 EMLDAMFNVIDGSIPS--GIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       171 ~~L~ls~n~l~~~~p~--~~~~l~~L~~L~ls~N~l  204 (205)
                      +.|++++|+++ .++.  .+..+++|+++++++|++
T Consensus        90 ~~L~L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i  124 (162)
T d1a9na_          90 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV  124 (162)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             ccceecccccc-ccccccccccccccchhhcCCCcc
Confidence            99999999998 5553  578999999999999976

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=7.8e-15  Score=107.23  Aligned_cols=124  Identities=23%  Similarity=0.326  Sum_probs=103.8

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ++++.|++++|.+++. ++ +..+++|++|++++|.+. .++ .+..++.|+.++++++.+.. . ..+..+++|+.+++
T Consensus        62 ~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l  135 (199)
T d2omxa2          62 NNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLEL  135 (199)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEEC
T ss_pred             CCcCcCccccccccCc-cc-ccCCcccccccccccccc-ccc-cccccccccccccccccccc-c-cccchhhhhHHhhh
Confidence            6799999999998854 33 888999999999999887 444 37889999999999988873 2 34778999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+. .++ .+..+++++.|++.+|+++ .++ .++++++|++|++++|+++
T Consensus       136 ~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~-~l~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         136 SSNTIS-DIS-ALSGLTSLQQLNFSSNQVT-DLK-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             CSSCCC-CCG-GGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCCEEECCSSCCC
T ss_pred             hhhhhc-ccc-ccccccccccccccccccc-CCc-cccCCCCCCEEECCCCCCC
Confidence            999988 444 5888999999999999998 444 3889999999999999875

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=1.2e-14  Score=112.67  Aligned_cols=129  Identities=25%  Similarity=0.249  Sum_probs=110.4

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.+++.++.+. .+|..+  +++|++|++++|..++..+..+..++.+++|++++|.+++..+..+.++++|++|++
T Consensus       150 ~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L  226 (305)
T d1xkua_         150 KKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  226 (305)
T ss_dssp             TTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             cccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeec
Confidence            46788999999887 455543  578999999999999888888999999999999999999777788899999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChh-------hcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSG-------IRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~-------~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|+++ .+|..+..+++|++|++++|+++ .++..       .....+|+.|++++|+++
T Consensus       227 ~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         227 NNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccccc-ccccccccccCCCEEECCCCccC-ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            999999 67888999999999999999998 55432       345678999999999863

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=2.5e-14  Score=105.39  Aligned_cols=123  Identities=33%  Similarity=0.347  Sum_probs=76.4

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.+++ ++ .+..+++|++|++++|+++ .+| .+..+++|+.+++++|.+. .+ +.+..+++++.+++
T Consensus        68 ~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~  141 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYL  141 (210)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEEC
T ss_pred             CCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccccccccc-cc-cccccccccccccc
Confidence            578888888888875 33 3677888888888888887 355 4677788888888887765 32 23455555555555


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      ++|.+++.  ..+..+++|+++++++|.++ .++. ++++++|+.|++++|+|
T Consensus       142 ~~n~l~~~--~~~~~l~~L~~l~l~~n~l~-~i~~-l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         142 GNNKITDI--TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCC
T ss_pred             cccccccc--cccccccccccccccccccc-cccc-ccCCCCCCEEECCCCCC
Confidence            55555532  22444555555555555554 2222 45555555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=7.3e-14  Score=101.97  Aligned_cols=124  Identities=27%  Similarity=0.372  Sum_probs=105.5

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++++++++. ++ .+..+++|++|++++|++++..|  +..+++|++|++++|.+. .++ .+.++++|+.+++
T Consensus        40 ~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-ccccccccccccc
Confidence            568899999999874 43 47889999999999999985433  889999999999999987 555 4889999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.....  ..+..+++|+.+++++|.+. .++ .+..+++|+.|++++|+++
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCC
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhc-ccc-ccccccccccccccccccc
Confidence            99988853  34788999999999999997 444 5889999999999999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.1e-14  Score=99.53  Aligned_cols=103  Identities=19%  Similarity=0.086  Sum_probs=82.4

Q ss_pred             EEcCCCCccccCCccccCCCCCCEEEccCCc-cccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEccccc
Q 043006           77 LNHLDMGLGGTIPSHLGNLLFLMSLDLTLNN-FHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNS  155 (205)
Q Consensus        77 L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~  155 (205)
                      ++..++++. ..|..+..+++|++|++++|+ ++..-+..|..+++|+.|++++|+++...|..|..+++|++|+|++|+
T Consensus        13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            455555555 567778888999999997664 775555678999999999999999996667789999999999999999


Q ss_pred             CCCCCchhccCCCCCCeeecccCcCc
Q 043006          156 LTGLIPNSLFNLSKLEMLDAMFNVID  181 (205)
Q Consensus       156 l~~~~p~~~~~l~~L~~L~ls~n~l~  181 (205)
                      ++ .+|........|+.|++++|.+.
T Consensus        92 l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          92 LE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             Cc-ccChhhhccccccccccCCCccc
Confidence            99 55655555557999999999885

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.49  E-value=1.2e-13  Score=109.61  Aligned_cols=124  Identities=27%  Similarity=0.417  Sum_probs=89.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccc--------------------cccCCCCCCcEEEcccCc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLA--------------------HELGQLRRLRFISFTFNK  131 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p--------------------~~~~~l~~L~~L~l~~n~  131 (205)
                      ..++.+++.+|.+++..+  +..+++|++++++++.+++..+                    ..+..+++++.+++++|+
T Consensus       241 ~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~  318 (384)
T d2omza2         241 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN  318 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred             cccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCC
Confidence            456677777777664332  5566677777776666653211                    234556788888888888


Q ss_pred             CCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCC
Q 043006          132 LSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNN  203 (205)
Q Consensus       132 l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~  203 (205)
                      +++ ++ .+..+++|++|++++|++++ ++ .+..+++|++|++++|++++..|  ++++++|+.|++++|.
T Consensus       319 l~~-l~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         319 ISD-IS-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CSC-CG-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCC-Cc-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            884 33 37788899999999998884 44 57888999999999999885443  7888899999998874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.48  E-value=3.9e-13  Score=98.85  Aligned_cols=124  Identities=23%  Similarity=0.263  Sum_probs=105.0

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|+++++.++.. + .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+++ .+| .+..+++|+.+++
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-ccc-ccccccccccccc
Confidence            4688999999998753 3 37889999999999999985 44 3688999999999999998 555 5888999999999


Q ss_pred             ccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++|.+. .++ .+..++.++.+++++|.+++  +..+.++++|+++++++|+++
T Consensus       120 ~~~~~~-~~~-~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~  169 (210)
T d1h6ta2         120 EHNGIS-DIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS  169 (210)
T ss_dssp             TTSCCC-CCG-GGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred             cccccc-ccc-cccccccccccccccccccc--ccccccccccccccccccccc
Confidence            999987 333 57889999999999999973  445778999999999999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=2.6e-13  Score=107.61  Aligned_cols=126  Identities=26%  Similarity=0.326  Sum_probs=101.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCC--------------
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP--------------  137 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--------------  137 (205)
                      .+++.+++++|.++. + +.+..++.|+.+++++|.+++..+  +..+++|++++++++.+++..+              
T Consensus       219 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~  294 (384)
T d2omza2         219 TNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNE  294 (384)
T ss_dssp             TTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             CCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCEeeccCcccCCCCccccccccccccccc
Confidence            578889999998874 3 357888999999999999985433  7788999999999988774321              


Q ss_pred             ------ccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          138 ------TWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       138 ------~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                            ..+..+++++++++++|++++. + .+..+++|++|++++|+++ .++ .++++++|++|++++|+|+
T Consensus       295 n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         295 NQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             SCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCC
Confidence                  2245567889999999999865 3 3788999999999999998 455 5889999999999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=4.8e-13  Score=99.35  Aligned_cols=126  Identities=27%  Similarity=0.400  Sum_probs=80.5

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCC--------------
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP--------------  137 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p--------------  137 (205)
                      ++++.|++++|.+.+..|  +..++.++++++++|.++ .++ .+..+++|++++++++...+..+              
T Consensus        63 ~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~  138 (227)
T d1h6ua2          63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (227)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCcEeecCCceeecccc--cccccccccccccccccc-ccc-cccccccccccccccccccccchhccccchhhhhchh
Confidence            677888888887764332  667777777777777765 333 35566667776666665442111              


Q ss_pred             ------ccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          138 ------TWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       138 ------~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                            ..+..+++|+++++++|.+++..  .+..+++|++|++++|+++ .+|. ++++++|++|++++|+++
T Consensus       139 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~-~l~~-l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         139 NQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSCCC
T ss_pred             hhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccC-CChh-hcCCCCCCEEECcCCcCC
Confidence                  12344556777777777666332  2666777777777777776 3443 667777777777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.2e-13  Score=94.20  Aligned_cols=85  Identities=21%  Similarity=0.122  Sum_probs=53.1

Q ss_pred             CcEEEEEcCCCC-ccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEE
Q 043006           72 QRVTALNHLDMG-LGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILS  150 (205)
Q Consensus        72 ~~l~~L~l~~~~-l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~  150 (205)
                      .+++.|++.++. ++..-+..|.++++|++|++++|+++...|..|..+++|++|++++|+++ .+|.......+|++|+
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~  109 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELV  109 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEE
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccc
Confidence            356666665553 55444455666777777777777776544556666777777777777776 5554433444577777


Q ss_pred             cccccCC
Q 043006          151 LCNNSLT  157 (205)
Q Consensus       151 l~~n~l~  157 (205)
                      +++|++.
T Consensus       110 L~~Np~~  116 (156)
T d2ifga3         110 LSGNPLH  116 (156)
T ss_dssp             CCSSCCC
T ss_pred             cCCCccc
Confidence            7777664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.41  E-value=9.6e-16  Score=112.21  Aligned_cols=121  Identities=24%  Similarity=0.257  Sum_probs=89.2

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      .+++.|++++|.++ .++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .++ .+..+++|++|++
T Consensus        48 ~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~L  122 (198)
T d1m9la_          48 KACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEEE
T ss_pred             cccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-ccccccccccccc
Confidence            56788888888887 444 4778888888888888887 55654445567888888888887 443 4677788888888


Q ss_pred             ccccCCCCCc--hhccCCCCCCeeecccCcCcccCChh----------hcCCCCCCEEE
Q 043006          152 CNNSLTGLIP--NSLFNLSKLEMLDAMFNVIDGSIPSG----------IRNLSNLFNLN  198 (205)
Q Consensus       152 ~~n~l~~~~p--~~~~~l~~L~~L~ls~n~l~~~~p~~----------~~~l~~L~~L~  198 (205)
                      ++|+++. ++  ..+..+++|+.|++++|.+....+..          +.++++|+.||
T Consensus       123 ~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         123 SNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccchhcc-ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            8888874 33  45778888888888888876433321          45678888877

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.4e-13  Score=98.40  Aligned_cols=145  Identities=19%  Similarity=0.217  Sum_probs=89.8

Q ss_pred             CcccceeeCCCC---------CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccc-cccCCCCCCcEEEccc
Q 043006           60 CNWIGISCGLPH---------QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLA-HELGQLRRLRFISFTF  129 (205)
Q Consensus        60 c~w~gv~c~~~~---------~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~  129 (205)
                      |....+.|....         ..+++|++++|.++..-+..|.++++|++|++++|.+...++ ..|..++.++++.+..
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            455566664211         368889999999885445568889999999999998765443 3455666666666543


Q ss_pred             -CcCCCCCCccccCCCCCCEEEcccccCCCC-------------------------------------------------
Q 043006          130 -NKLSGSIPTWIGVLSKLRILSLCNNSLTGL-------------------------------------------------  159 (205)
Q Consensus       130 -n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~-------------------------------------------------  159 (205)
                       |.+....+..+.++++|+++++++|.+...                                                 
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             445544445566666666666666655421                                                 


Q ss_pred             CchhccCCCCCCee-ecccCcCcccCCh-hhcCCCCCCEEEccCCCCC
Q 043006          160 IPNSLFNLSKLEML-DAMFNVIDGSIPS-GIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       160 ~p~~~~~l~~L~~L-~ls~n~l~~~~p~-~~~~l~~L~~L~ls~N~l~  205 (205)
                      ++.......+++.+ ++.+|+++ .+|. .|.++++|++|++++|+|+
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             cccccccchhhhccccccccccc-cccHHHhcCCCCCCEEECCCCcCC
Confidence            11111122222222 34555565 5554 4678899999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=5.9e-12  Score=93.32  Aligned_cols=126  Identities=23%  Similarity=0.333  Sum_probs=101.6

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEc
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSL  151 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l  151 (205)
                      ..++.|++.+++++. ++ .+..+++|++|++++|.+++..|  +..+++++++++++|.++ .++ .+..+++|+.+++
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-ccccccccccccc
Confidence            568999999999984 54 58999999999999999985433  789999999999999987 444 5788999999999


Q ss_pred             ccccCCCCCc--------------------hhccCCCCCCeeecccCcCcccCChhhcCCCCCCEEEccCCCCC
Q 043006          152 CNNSLTGLIP--------------------NSLFNLSKLEMLDAMFNVIDGSIPSGIRNLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       152 ~~n~l~~~~p--------------------~~~~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~ls~N~l~  205 (205)
                      +++...+..+                    ..+...++|+.|++++|.+.+ ++ .++++++|+.|++++|+++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LT-PLANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccchhccccchhhhhchhhhhchhhhhcccccccccccccccccc-ch-hhcccccceecccCCCccC
Confidence            9887664311                    124556789999999998873 33 3789999999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.36  E-value=3e-15  Score=109.53  Aligned_cols=112  Identities=24%  Similarity=0.282  Sum_probs=95.7

Q ss_pred             cCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccC
Q 043006           87 TIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFN  166 (205)
Q Consensus        87 ~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~  166 (205)
                      .+|..+..+++|++|++++|.++ .++ .+..+++|++|++++|.++ .+|.....+++|++|++++|.++. ++ .+..
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~  113 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK  113 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-cccc
Confidence            45667888999999999999998 555 4888999999999999998 777666666789999999999994 33 4778


Q ss_pred             CCCCCeeecccCcCcccCC--hhhcCCCCCCEEEccCCCC
Q 043006          167 LSKLEMLDAMFNVIDGSIP--SGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       167 l~~L~~L~ls~n~l~~~~p--~~~~~l~~L~~L~ls~N~l  204 (205)
                      +++|+.|++++|.++ .++  ..++.+++|+.|++++|++
T Consensus       114 l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         114 LVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccccccchhc-cccccccccCCCccceeecCCCcc
Confidence            899999999999998 454  3588999999999999975

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.7e-10  Score=85.86  Aligned_cols=104  Identities=20%  Similarity=0.194  Sum_probs=85.5

Q ss_pred             EEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCC-ccccCCCCCCEEEccc
Q 043006           75 TALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIP-TWIGVLSKLRILSLCN  153 (205)
Q Consensus        75 ~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~l~l~~  153 (205)
                      +.++.++.+++ .+|..+.  +.+++|++++|.++...+..|.++++|++|++++|.+...++ ..+..++.++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            35677788887 7787664  479999999999985444568999999999999999875554 5688999999999875


Q ss_pred             -ccCCCCCchhccCCCCCCeeecccCcCc
Q 043006          154 -NSLTGLIPNSLFNLSKLEMLDAMFNVID  181 (205)
Q Consensus       154 -n~l~~~~p~~~~~l~~L~~L~ls~n~l~  181 (205)
                       |.+....+..+..+++|+.+++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             cccccccccccccccccccccccchhhhc
Confidence             5777676778899999999999999887

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.03  E-value=1.9e-09  Score=83.66  Aligned_cols=118  Identities=25%  Similarity=0.292  Sum_probs=78.4

Q ss_pred             cEEEEEcCCCCccccCCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcc
Q 043006           73 RVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLC  152 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~  152 (205)
                      +++.|++++++++ .+|+.   .++|++|++++|+++ .+|..   +.+|+.|++++|.++ .+++.   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            4667888888876 56653   356788888888887 66754   356778888888776 44431   1457888888


Q ss_pred             cccCCCCCchhccCCCCCCeeecccCcCcccC------------------ChhhcCCCCCCEEEccCCCC
Q 043006          153 NNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSI------------------PSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       153 ~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~------------------p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +|.+. .+|. +..+++|+.+++++|.+.+..                  +..+..++.++.+++++|.+
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC
T ss_pred             ccccc-cccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccc
Confidence            88877 4554 566778888888777665221                  12234456677777777653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=7.8e-11  Score=90.20  Aligned_cols=131  Identities=18%  Similarity=0.160  Sum_probs=74.3

Q ss_pred             CcEEEEEcCCCCccccCCccccCCCCCCEEEccCC-ccccc-cccccCCCCCCcEEEcccCc-CCCC-------------
Q 043006           72 QRVTALNHLDMGLGGTIPSHLGNLLFLMSLDLTLN-NFHGH-LAHELGQLRRLRFISFTFNK-LSGS-------------  135 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~~p~~l~~l~~L~~L~l~~n-~~~~~-~p~~~~~l~~L~~L~l~~n~-l~~~-------------  135 (205)
                      .++++|+++++.+.+..+..+..+++|++|+++++ .++.. +..-...+++|++|+++++. ++..             
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            45777777777766666666666777777777764 34321 11112345566666666532 2210             


Q ss_pred             ----------------CCccccCCCCCCEEEcccc-cCCCCCchhccCCCCCCeeecccC-cCcccCChhhcCCCCCCEE
Q 043006          136 ----------------IPTWIGVLSKLRILSLCNN-SLTGLIPNSLFNLSKLEMLDAMFN-VIDGSIPSGIRNLSNLFNL  197 (205)
Q Consensus       136 ----------------~p~~~~~l~~L~~l~l~~n-~l~~~~p~~~~~l~~L~~L~ls~n-~l~~~~p~~~~~l~~L~~L  197 (205)
                                      +.....++++|++|++++| .+++..+..+..+++|++|++++| .+++.....++++++|+.|
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L  230 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  230 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEE
Confidence                            0011123566777777664 455555555666677777777764 4554444456666777777


Q ss_pred             EccCC
Q 043006          198 NLGYN  202 (205)
Q Consensus       198 ~ls~N  202 (205)
                      +++++
T Consensus       231 ~l~~~  235 (284)
T d2astb2         231 QVFGI  235 (284)
T ss_dssp             ECTTS
T ss_pred             eeeCC
Confidence            77665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.00  E-value=1.6e-09  Score=84.11  Aligned_cols=94  Identities=23%  Similarity=0.283  Sum_probs=78.7

Q ss_pred             CCCEEEccCCccccccccccCCCCCCcEEEcccCcCCCCCCccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecc
Q 043006           97 FLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFNKLSGSIPTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAM  176 (205)
Q Consensus        97 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls  176 (205)
                      ++++|+++++.++ .+|+.   +++|++|++++|+++ .+|+.   +.+|+.|++++|+++ .++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            6889999999998 68853   578999999999999 88865   468999999999998 44431   2469999999


Q ss_pred             cCcCcccCChhhcCCCCCCEEEccCCCC
Q 043006          177 FNVIDGSIPSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       177 ~n~l~~~~p~~~~~l~~L~~L~ls~N~l  204 (205)
                      +|.+. .+|. ++++++|+.+++++|.+
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCC
T ss_pred             ccccc-cccc-hhhhccceeeccccccc
Confidence            99998 7775 67899999999999875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=9.6e-11  Score=89.66  Aligned_cols=131  Identities=17%  Similarity=0.114  Sum_probs=94.9

Q ss_pred             CcEEEEEcCCCCcccc-CCccccCCCCCCEEEccCCccccccccccCCCCCCcEEEcccC-cCCCC-CCccccCCCCCCE
Q 043006           72 QRVTALNHLDMGLGGT-IPSHLGNLLFLMSLDLTLNNFHGHLAHELGQLRRLRFISFTFN-KLSGS-IPTWIGVLSKLRI  148 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~-~p~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~  148 (205)
                      .++++|+++++.+++. ++..+..+++|++|+++++.++...+..+..+++|++|+++++ .++.. +..-...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            5789999999987754 4455777899999999999998777788889999999999985 45522 1122346788888


Q ss_pred             EEcccc-cCCCC-----------------------------CchhccCCCCCCeeecccC-cCcccCChhhcCCCCCCEE
Q 043006          149 LSLCNN-SLTGL-----------------------------IPNSLFNLSKLEMLDAMFN-VIDGSIPSGIRNLSNLFNL  197 (205)
Q Consensus       149 l~l~~n-~l~~~-----------------------------~p~~~~~l~~L~~L~ls~n-~l~~~~p~~~~~l~~L~~L  197 (205)
                      |+++++ .++..                             +......+++|++|++++| .+++..+..+.++++|++|
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L  205 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  205 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEE
Confidence            888875 33310                             1111234678888888875 4666666677888888888


Q ss_pred             EccCC
Q 043006          198 NLGYN  202 (205)
Q Consensus       198 ~ls~N  202 (205)
                      +++++
T Consensus       206 ~L~~C  210 (284)
T d2astb2         206 SLSRC  210 (284)
T ss_dssp             ECTTC
T ss_pred             ECCCC
Confidence            88884

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.86  E-value=2.7e-10  Score=89.22  Aligned_cols=133  Identities=16%  Similarity=0.185  Sum_probs=87.3

Q ss_pred             cEEEEEcCCCCccc----cCCccccCCCCCCEEEccCCccccc-----cccccCCCCCCcEEEcccCcCCCC----CCcc
Q 043006           73 RVTALNHLDMGLGG----TIPSHLGNLLFLMSLDLTLNNFHGH-----LAHELGQLRRLRFISFTFNKLSGS----IPTW  139 (205)
Q Consensus        73 ~l~~L~l~~~~l~~----~~p~~l~~l~~L~~L~l~~n~~~~~-----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~  139 (205)
                      .++.+.++++.++.    .+...+...+.++.|++++|.++..     +...+..+++|+.|++++|.++..    +...
T Consensus       159 ~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~  238 (344)
T d2ca6a1         159 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  238 (344)
T ss_dssp             CCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             ccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccc
Confidence            45556666665542    1223345567888888888887632     233456678888899988887532    3345


Q ss_pred             ccCCCCCCEEEcccccCCCCCc----hhcc--CCCCCCeeecccCcCccc----CChhhc-CCCCCCEEEccCCCCC
Q 043006          140 IGVLSKLRILSLCNNSLTGLIP----NSLF--NLSKLEMLDAMFNVIDGS----IPSGIR-NLSNLFNLNLGYNNLQ  205 (205)
Q Consensus       140 ~~~l~~L~~l~l~~n~l~~~~p----~~~~--~l~~L~~L~ls~n~l~~~----~p~~~~-~l~~L~~L~ls~N~l~  205 (205)
                      +..+++|++|++++|.+++.-.    +.+.  ..+.|+.|++++|.++..    +...+. +.++|+.|++++|.++
T Consensus       239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            6678888999999888875322    2222  236788899999888632    333343 5778889999988763

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.75  E-value=6.3e-10  Score=87.04  Aligned_cols=89  Identities=19%  Similarity=0.259  Sum_probs=59.8

Q ss_pred             CCCCCCcEEEcccCcCCCC-----CCccccCCCCCCEEEcccccCCCC----CchhccCCCCCCeeecccCcCccc----
Q 043006          117 GQLRRLRFISFTFNKLSGS-----IPTWIGVLSKLRILSLCNNSLTGL----IPNSLFNLSKLEMLDAMFNVIDGS----  183 (205)
Q Consensus       117 ~~l~~L~~L~l~~n~l~~~-----~p~~~~~l~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~~----  183 (205)
                      ...+.|+++++++|.++..     +...+...++|++|++++|.++..    +...+...++|++|++++|.+++.    
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            3456788888888877632     223456678888888888887632    334556778888888888888744    


Q ss_pred             CChhhcC--CCCCCEEEccCCCCC
Q 043006          184 IPSGIRN--LSNLFNLNLGYNNLQ  205 (205)
Q Consensus       184 ~p~~~~~--l~~L~~L~ls~N~l~  205 (205)
                      +-..+..  ...|++|++++|+|+
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHHhhhccCCCCCEEECCCCcCC
Confidence            2223333  356888888888763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3e-10  Score=91.14  Aligned_cols=110  Identities=20%  Similarity=0.165  Sum_probs=76.4

Q ss_pred             cEEEEEcCCCCcccc-CCccccCCCCCCEEEccCCcccc----ccccccCCCCCCcEEEcccCcCCCC----CCcccc-C
Q 043006           73 RVTALNHLDMGLGGT-IPSHLGNLLFLMSLDLTLNNFHG----HLAHELGQLRRLRFISFTFNKLSGS----IPTWIG-V  142 (205)
Q Consensus        73 ~l~~L~l~~~~l~~~-~p~~l~~l~~L~~L~l~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~-~  142 (205)
                      +++.|+++++++++. +..-+..++++++|++++|.++.    .++..+..+++|++|++++|.++..    +.+.+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            578889999888753 23335556788888999888762    2344556778888999988887521    122222 2


Q ss_pred             CCCCCEEEcccccCCCC----CchhccCCCCCCeeecccCcCcc
Q 043006          143 LSKLRILSLCNNSLTGL----IPNSLFNLSKLEMLDAMFNVIDG  182 (205)
Q Consensus       143 l~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~  182 (205)
                      ..+|++|++++|++++.    ++..+...++|++|++++|.++.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            34788888888888743    34556677888888888888763

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=4.1e-10  Score=79.06  Aligned_cols=82  Identities=20%  Similarity=0.153  Sum_probs=47.5

Q ss_pred             CCCCCCcEEEcccCcCCCCC--CccccCCCCCCEEEcccccCCCCCchhccCCCCCCeeecccCcCcccCCh-------h
Q 043006          117 GQLRRLRFISFTFNKLSGSI--PTWIGVLSKLRILSLCNNSLTGLIPNSLFNLSKLEMLDAMFNVIDGSIPS-------G  187 (205)
Q Consensus       117 ~~l~~L~~L~l~~n~l~~~~--p~~~~~l~~L~~l~l~~n~l~~~~p~~~~~l~~L~~L~ls~n~l~~~~p~-------~  187 (205)
                      ..+++|++|++++|+++...  +..+..+++|+.|++++|.++..-+-.+.....|+.+++++|.+......       .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            44666777777777766321  23345667777777777777633222233344577777777777644332       1


Q ss_pred             hcCCCCCCEEE
Q 043006          188 IRNLSNLFNLN  198 (205)
Q Consensus       188 ~~~l~~L~~L~  198 (205)
                      +..+++|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45567777665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.7e-09  Score=86.56  Aligned_cols=38  Identities=21%  Similarity=0.183  Sum_probs=18.1

Q ss_pred             CcEEEEEcCCCCcccc----CCccccCCCCCCEEEccCCccc
Q 043006           72 QRVTALNHLDMGLGGT----IPSHLGNLLFLMSLDLTLNNFH  109 (205)
Q Consensus        72 ~~l~~L~l~~~~l~~~----~p~~l~~l~~L~~L~l~~n~~~  109 (205)
                      ..++.+++++|.+...    ....+...+.++.+++++|.++
T Consensus       255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~  296 (460)
T d1z7xw1         255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  296 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc
Confidence            3455666666655421    1122333445555555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.9e-08  Score=68.64  Aligned_cols=83  Identities=25%  Similarity=0.153  Sum_probs=63.9

Q ss_pred             cccCCCCCCEEEccCCccccc--cccccCCCCCCcEEEcccCcCCCCCCc-cccCCCCCCEEEcccccCCCCCch-----
Q 043006           91 HLGNLLFLMSLDLTLNNFHGH--LAHELGQLRRLRFISFTFNKLSGSIPT-WIGVLSKLRILSLCNNSLTGLIPN-----  162 (205)
Q Consensus        91 ~l~~l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~l~l~~n~l~~~~p~-----  162 (205)
                      ....++.|++|++++|+++..  ++..+..+++|+.|++++|.++ .+++ ......+|+.+++++|++......     
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            345678999999999999843  2344667899999999999998 4443 344556799999999999865442     


Q ss_pred             --hccCCCCCCeee
Q 043006          163 --SLFNLSKLEMLD  174 (205)
Q Consensus       163 --~~~~l~~L~~L~  174 (205)
                        .+..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence              256789999997

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.16  E-value=7.1e-07  Score=62.32  Aligned_cols=86  Identities=16%  Similarity=0.166  Sum_probs=38.7

Q ss_pred             CCCCCCcEEEcccCcCCCC----CCccccCCCCCCEEEcccccCCCC----CchhccCCCCCCeeecccCcCcc------
Q 043006          117 GQLRRLRFISFTFNKLSGS----IPTWIGVLSKLRILSLCNNSLTGL----IPNSLFNLSKLEMLDAMFNVIDG------  182 (205)
Q Consensus       117 ~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~n~l~~~----~p~~~~~l~~L~~L~ls~n~l~~------  182 (205)
                      ...++|++|++++|.+...    +.+.+...+.|++|++++|.++..    +-..+..-++|++|++++|.+..      
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~  120 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  120 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHH
Confidence            3344555555555554321    112233345555555555555531    11223344556666665554331      


Q ss_pred             -cCChhhcCCCCCCEEEccCC
Q 043006          183 -SIPSGIRNLSNLFNLNLGYN  202 (205)
Q Consensus       183 -~~p~~~~~l~~L~~L~ls~N  202 (205)
                       .+...+...++|+.|+++++
T Consensus       121 ~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_         121 MDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHHHhCCCccEeeCcCC
Confidence             02223344455666665544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.79  E-value=6.5e-06  Score=57.22  Aligned_cols=87  Identities=9%  Similarity=0.075  Sum_probs=62.9

Q ss_pred             CCCCCcEEEcccC-cCCCC----CCccccCCCCCCEEEcccccCCC----CCchhccCCCCCCeeecccCcCccc----C
Q 043006          118 QLRRLRFISFTFN-KLSGS----IPTWIGVLSKLRILSLCNNSLTG----LIPNSLFNLSKLEMLDAMFNVIDGS----I  184 (205)
Q Consensus       118 ~l~~L~~L~l~~n-~l~~~----~p~~~~~l~~L~~l~l~~n~l~~----~~p~~~~~l~~L~~L~ls~n~l~~~----~  184 (205)
                      +.++|++|+++++ .++..    +-..+...++|++|++++|.++.    .+.+.+...+.|+.|++++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3467888888763 35421    22456677899999999999874    2334455678999999999999843    3


Q ss_pred             ChhhcCCCCCCEEEccCCCC
Q 043006          185 PSGIRNLSNLFNLNLGYNNL  204 (205)
Q Consensus       185 p~~~~~l~~L~~L~ls~N~l  204 (205)
                      -..+...++|++|++++|.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHhCCcCCEEECCCCcC
Confidence            34567778999999998854

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.64  E-value=7.7e-06  Score=56.65  Aligned_cols=109  Identities=15%  Similarity=0.137  Sum_probs=53.7

Q ss_pred             CCCCCEEEccC-Cccccc----cccccCCCCCCcEEEcccCcCCCCC----CccccCCCCCCEEEcccccCCCC----Cc
Q 043006           95 LLFLMSLDLTL-NNFHGH----LAHELGQLRRLRFISFTFNKLSGSI----PTWIGVLSKLRILSLCNNSLTGL----IP  161 (205)
Q Consensus        95 l~~L~~L~l~~-n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~~----p~~~~~l~~L~~l~l~~n~l~~~----~p  161 (205)
                      .+.|++|++++ +.++..    +-..+...++|++|++++|.++...    .+.+...++++.+++++|.++..    +.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            34555566554 233311    1223344556666666666554221    12333445666666666665532    22


Q ss_pred             hhccCCCCCCeeec--ccCcCcc----cCChhhcCCCCCCEEEccCCC
Q 043006          162 NSLFNLSKLEMLDA--MFNVIDG----SIPSGIRNLSNLFNLNLGYNN  203 (205)
Q Consensus       162 ~~~~~l~~L~~L~l--s~n~l~~----~~p~~~~~l~~L~~L~ls~N~  203 (205)
                      ..+...++|+.+++  ++|.+..    .+...+...+.|+.|+++.+.
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            33445566665433  3455542    133344556677777766553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.01  E-value=5.1e-05  Score=52.32  Aligned_cols=109  Identities=17%  Similarity=0.130  Sum_probs=76.6

Q ss_pred             CcEEEEEcCC-CCcccc----CCccccCCCCCCEEEccCCccccc----cccccCCCCCCcEEEcccCcCCCC----CCc
Q 043006           72 QRVTALNHLD-MGLGGT----IPSHLGNLLFLMSLDLTLNNFHGH----LAHELGQLRRLRFISFTFNKLSGS----IPT  138 (205)
Q Consensus        72 ~~l~~L~l~~-~~l~~~----~p~~l~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~  138 (205)
                      +.++.|++++ +.++..    +-..+...++|++|++++|.++..    +-..+...+.++.+++++|.+...    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            6788999987 445422    334566788999999999988743    223345568899999999988633    224


Q ss_pred             cccCCCCCCEEEcc--cccCCC----CCchhccCCCCCCeeecccCcC
Q 043006          139 WIGVLSKLRILSLC--NNSLTG----LIPNSLFNLSKLEMLDAMFNVI  180 (205)
Q Consensus       139 ~~~~l~~L~~l~l~--~n~l~~----~~p~~~~~l~~L~~L~ls~n~l  180 (205)
                      .+...++|+.+++.  +|.+..    .+.+.+...++|+.|++..+..
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            56677889876664  566653    2444556778999999987754