Citrus Sinensis ID: 043022

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MAAVSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY
Secondary Structure (PSIPRED)
cccEEEEEEEcccccccccccccccccccccccccccEEccccccccccEEEccccccccccccccccccccccccccccccccEEEEEEEEEEEcccccccccEEEEEcccccccccccccccccHHHHHHccccccccccccccccccccccccEEEEEEEEEEEEcccccccccccHHHHcccccccEEEEEEcccccccccccccccEEEEEccccHHHHHHHHHHHHHHccccccccccEEEEEccccccccccHHHHHHHHHHcccccEEEEEEEcccccccccEEEHHHHHHHcHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccEEccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccccccccccccccccccEEEEEccHHHHHcccccEEEccccccccccccccccccEcccccccccEEccEcEEEEEEEEEEcccccccccEEEEEEEcccccccccccEEEEEcccEcccccEcccEEEEEccccccccccccEEEEEEEccEEEcccccEEEcHHHHHHHccccccEEEEEEEEccccccEcccccEEEEEEEHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccHHHcccHHHHHHHHHHccccEEEEEEEccccEcccccEccHHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccEEEEEc
Coil and Loop (DISEMBL)
MAAVSAAvslptskstslptrtsiispdritfrkvpfyykdvstggrvVSVRAQvtteapakveKESKKMEEGVivnkfkpktpyigrcllntkitgddapgetwHMVFStegevpykegqsigviadgvdknakphklrLYSIAssalgdfgdsktvSLCVKRLVytnengeiVKGVCsnflcdlkpgaevkitgpvgkemlmprdpnaTVIMLATgtgiapfrGFLWKMFFEkhedykfngLAWLFLgvptsssllYKEEFEKMKEkapenfrlDFAVSReqknekgeKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY
Flexible Loop (DISEMBL)
maavsaavslptskstslptrtsiispdritfrkVPFYykdvstggrvvsvraqvtteapakvekeskkmeegvivnkfkpktpyigrCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIassalgdfgdskTVSLCVKRLVYtnengeivKGVCSNFLCDLKPGAEVKItgpvgkemlmprDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKekapenfrldfavsreqknekgekmyIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQlkkseqwnvevy
Low Complexity Region (SEG)
MAAVSAAVslptskstslptrtsIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY
Disordered region (IsUnstruct)
***********************IISPDRITFRKVPFYYKDVSTGGRVVSVRAQV*****************GVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYK*******************************MYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQL***********
Disordered Region (DISOPRED)
****SAA**********************ITFRKVPFYYKDV*********************************VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSAL***G*SKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFE*****KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY
Disordered Region (DISEMBL)
********************RTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY
Disordered Region (DISPRO)
*AAVSAAVSLPT**************PDRITFRKVPFYYKDVSTGGRVVSVRAQ***********ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAVSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
P10933	360	Ferredoxin--NADP reductas	N/A	no	0.991	0.994	0.841	1e-178
P41343	365	Ferredoxin--NADP reductas	N/A	no	0.997	0.986	0.837	1e-176
O04977	362	Ferredoxin--NADP reductas	N/A	no	0.994	0.991	0.866	1e-176
P00455	369	Ferredoxin--NADP reductas	N/A	no	0.994	0.972	0.806	1e-175
P41346	363	Ferredoxin--NADP reductas	N/A	no	0.991	0.986	0.823	1e-174
Q8W493	369	Ferredoxin--NADP reductas	yes	no	0.991	0.970	0.786	1e-170
Q9FKW6	360	Ferredoxin--NADP reductas	no	no	0.980	0.983	0.826	1e-166
P41344	362	Ferredoxin--NADP reductas	yes	no	0.872	0.870	0.838	1e-160
Q00598	363	Ferredoxin--NADP reductas	N/A	no	0.872	0.867	0.618	1e-116
Q55318	413	Ferredoxin--NADP reductas	N/A	no	0.814	0.711	0.552	1e-100

>sp|P10933|FENR1_PEA Ferredoxin--NADP reductase, leaf isozyme, chloroplastic OS=Pisum sativum GN=PETH PE=1 SV=1

 Score =  625 bits (1611), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 303/360 (84%), Positives = 334/360 (92%), Gaps = 2/360 (0%)

Query: 2   AAVSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPA 61
           AAV+AAVSLP S STSLP RTSI++P+R+ F+KV     +VS  GRV ++RAQVTTEAPA
Sbjct: 3   AAVTAAVSLPYSNSTSLPIRTSIVAPERLVFKKVSL--NNVSISGRVGTIRAQVTTEAPA 60

Query: 62  KVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQ 121
           KV K SKK +E ++VNKFKPK PY+GRCLLNTKITGDDAPGETWHMVFSTEGEVPY+EGQ
Sbjct: 61  KVVKHSKKQDENIVVNKFKPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQ 120

Query: 122 SIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSN 181
           SIG++ DG+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTN+ GE+VKGVCSN
Sbjct: 121 SIGIVPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSN 180

Query: 182 FLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF 241
           FLCDLKPG+EVKITGPVGKEMLMP+DPNATVIML TGTGIAPFR FLWKMFFEKHEDY+F
Sbjct: 181 FLCDLKPGSEVKITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQF 240

Query: 242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY 301
           NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ N+KGEKMYIQTRMA+Y
Sbjct: 241 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMYIQTRMAQY 300

Query: 302 ANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           A ELWELLKKDNT+VYMCGL+GMEKGIDDIMVSLAA DGIDW++YK+ LKK+EQWNVEVY
Sbjct: 301 AEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVY 360

May play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power.
Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 1EC: 8EC: .EC: 1EC: .EC: 2

>sp|P41343|FENR_MESCR Ferredoxin--NADP reductase, chloroplastic OS=Mesembryanthemum crystallinum GN=PETH PE=2 SV=1

 Score =  616 bits (1589), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 304/363 (83%), Positives = 333/363 (91%), Gaps = 3/363 (0%)

Query: 2   AAVSAAVSLPTSKSTSLPTRTS-IISPDRITFRKVPFYYKDVSTGGRVVSVRAQVT-TEA 59
           AAV+AAVS P++KST L TRTS +I+ ++I F KVP YY++VS GG+V ++RA  +  EA
Sbjct: 3   AAVTAAVSFPSTKSTPLSTRTSSVITHEKINFNKVPLYYRNVSVGGKVGTIRAVASDVEA 62

Query: 60  P-AKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYK 118
           P AKVEK SKKMEEGVIVNK+KPK PY GRCLLNTKITGDDAPGETWHMVFS EGE+PY+
Sbjct: 63  PVAKVEKHSKKMEEGVIVNKYKPKNPYTGRCLLNTKITGDDAPGETWHMVFSHEGEIPYR 122

Query: 119 EGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGV 178
           EGQS+GVI +G+DKN KPHKLRLYSIAS  LGDFGDSKTVSLCVKRL+YTN+NGEIVKGV
Sbjct: 123 EGQSVGVIPEGIDKNGKPHKLRLYSIASRPLGDFGDSKTVSLCVKRLIYTNDNGEIVKGV 182

Query: 179 CSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED 238
           CSNFLCDLKPG+EV +TGPVGKEMLMP+DPNAT+IMLATGTGIAPFR FLWKMFFEKH+D
Sbjct: 183 CSNFLCDLKPGSEVVLTGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDD 242

Query: 239 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRM 298
           YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ NEKGEKMYIQTRM
Sbjct: 243 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNEKGEKMYIQTRM 302

Query: 299 AEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNV 358
           A+Y  ELWELLKKDNTYVYMCGL+GMEKGIDDIMVSLAA DGIDW DYKKQLKK+EQWNV
Sbjct: 303 AQYDRELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLAAEDGIDWFDYKKQLKKAEQWNV 362

Query: 359 EVY 361
           EVY
Sbjct: 363 EVY 365

May play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|O04977|FENR1_TOBAC Ferredoxin--NADP reductase, leaf-type isozyme, chloroplastic OS=Nicotiana tabacum GN=PETH PE=2 SV=1

 Score =  616 bits (1588), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 311/359 (86%), Positives = 333/359 (92%)

Query: 3   AVSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAK 62
           AVSAAVSLP+SKSTS  +RTSIIS D+I F KVP YY++VS G R+VS+RAQVTTEAPAK
Sbjct: 4   AVSAAVSLPSSKSTSFSSRTSIISTDKINFNKVPLYYRNVSGGSRLVSIRAQVTTEAPAK 63

Query: 63  VEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQS 122
           VEK SKK +EGVIVNKF+PK PY+GRCLLNTKITGDDAPGETWHMVFSTEGEVPY+EGQS
Sbjct: 64  VEKISKKQDEGVIVNKFRPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQS 123

Query: 123 IGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNF 182
           IGVIADGVD N KPHKLRLYS ASSALGDFGDSKTVSLCVKRLVYTN+ GE VKGVCSNF
Sbjct: 124 IGVIADGVDANGKPHKLRLYSTASSALGDFGDSKTVSLCVKRLVYTNDKGEEVKGVCSNF 183

Query: 183 LCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN 242
           LCDLKPGAEVKITGPVGKEMLMP+DPNATVIMLATGTGIAPFR FLWKMFFEKHEDYKFN
Sbjct: 184 LCDLKPGAEVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFFEKHEDYKFN 243

Query: 243 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYA 302
           G AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ NEKGEKMYIQTRMA+YA
Sbjct: 244 GTAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNEKGEKMYIQTRMAQYA 303

Query: 303 NELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
            ELW LL+KDNT++YMCGL+GME+GID+IM +LA  DGI W DYKKQLKK+EQWNVEVY
Sbjct: 304 EELWTLLQKDNTFIYMCGLKGMEQGIDEIMSALAERDGIVWADYKKQLKKAEQWNVEVY 362

May play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|P00455|FENR_SPIOL Ferredoxin--NADP reductase, chloroplastic OS=Spinacia oleracea GN=PETH PE=1 SV=1

 Score =  613 bits (1582), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 295/366 (80%), Positives = 336/366 (91%), Gaps = 7/366 (1%)

Query: 3   AVSAAVSLPTSKSTSLPTRTS-IISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTE--- 58
           AV+AAVS P++K+TSL  R+S +ISPD+I+++KVP YY++VS  G++  +RAQ+ ++   
Sbjct: 4   AVTAAVSFPSTKTTSLSARSSSVISPDKISYKKVPLYYRNVSATGKMGPIRAQIASDVEA 63

Query: 59  ---APAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEV 115
              APAKVEK SKKMEEG+ VNKFKPKTPY+GRCLLNTKITGDDAPGETWHMVFS EGE+
Sbjct: 64  PPPAPAKVEKHSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGEI 123

Query: 116 PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIV 175
           PY+EGQS+GVI DG DKN KPHKLRLYSIASSALGDFGD+K+VSLCVKRL+YTN+ GE +
Sbjct: 124 PYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETI 183

Query: 176 KGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK 235
           KGVCSNFLCDLKPGAEVK+TGPVGKEMLMP+DPNAT+IML TGTGIAPFR FLWKMFFEK
Sbjct: 184 KGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEK 243

Query: 236 HEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQ 295
           H+DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP+NFRLDFAVSREQ NEKGEKMYIQ
Sbjct: 244 HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQ 303

Query: 296 TRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQ 355
           TRMA+YA ELWE+LKKDNTY YMCGL+GMEKGIDDIMVSLAA +GIDW++YK+QLKK+EQ
Sbjct: 304 TRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQ 363

Query: 356 WNVEVY 361
           WNVEVY
Sbjct: 364 WNVEVY 369

May play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power.

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|P41346|FENR_VICFA Ferredoxin--NADP reductase, chloroplastic OS=Vicia faba GN=PETH PE=2 SV=1

 Score =  612 bits (1577), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 299/363 (82%), Positives = 331/363 (91%), Gaps = 5/363 (1%)

Query: 2   AAVSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPA 61
           AAV+AAVSLP S STSLP RTSI++P+R+ F+KV      VS  GRV ++RAQ+TTEA A
Sbjct: 3   AAVTAAVSLPYSNSTSLPIRTSIVAPERLVFKKVSL--NSVSISGRVGTIRAQITTEAEA 60

Query: 62  ---KVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYK 118
              KV K SKK +EG++VNKFKPK PY+GRCLLNTKITGDDAPGETWHMVF+TEGEVPY+
Sbjct: 61  PVTKVVKHSKKQDEGIVVNKFKPKEPYVGRCLLNTKITGDDAPGETWHMVFTTEGEVPYR 120

Query: 119 EGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGV 178
           EGQSIG++ DG+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTN+ GE+VKGV
Sbjct: 121 EGQSIGIVPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGV 180

Query: 179 CSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED 238
           CSNFLCDLKPG+EVKITGPVGKEMLMP+DPNATVIML TGTGIAPFR FLWKMFFEKHED
Sbjct: 181 CSNFLCDLKPGSEVKITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHED 240

Query: 239 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRM 298
           YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ N+KGEKMYIQTRM
Sbjct: 241 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMYIQTRM 300

Query: 299 AEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNV 358
           A+YA ELWELLKKDNT+VYMCGL+GMEKGIDDIMVS+   DGIDW++YK+ LKK+EQWNV
Sbjct: 301 AQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSIRPKDGIDWIEYKRTLKKAEQWNV 360

Query: 359 EVY 361
           EVY
Sbjct: 361 EVY 363

May play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power.

Vicia faba (taxid: 3906)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|Q8W493|FNRL2_ARATH Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic OS=Arabidopsis thaliana GN=LFNR2 PE=1 SV=1

 Score =  598 bits (1542), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 287/365 (78%), Positives = 327/365 (89%), Gaps = 7/365 (1%)

Query: 4   VSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYK--DVSTGGRVVSVRAQVTTEA-- 59
           ++AAVSL +S S+S P  +  I+P+RI F K  FYYK  +V TG RV S++AQ+TTE   
Sbjct: 5   MNAAVSLTSSNSSSFPATSCAIAPERIRFTKGAFYYKSNNVVTGKRVFSIKAQITTETDT 64

Query: 60  --PAK-VEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVP 116
             PAK VEK SKK EEGVIVN+++PK PY G+CLLNTKIT DDAPGETWHMVFS +GE+P
Sbjct: 65  PTPAKKVEKVSKKNEEGVIVNRYRPKEPYTGKCLLNTKITADDAPGETWHMVFSHQGEIP 124

Query: 117 YKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVK 176
           Y+EGQS+GVIADG+DKN KPHK+RLYSIASSALGD G+S+TVSLCVKRLVYTN+ GE VK
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKVRLYSIASSALGDLGNSETVSLCVKRLVYTNDQGETVK 184

Query: 177 GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH 236
           GVCSNFLCDL PG++VK+TGPVGKEMLMP+DPNATVIMLATGTGIAPFR FLWKMFFEKH
Sbjct: 185 GVCSNFLCDLAPGSDVKLTGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFFEKH 244

Query: 237 EDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQT 296
           +DYKFNGLAWLFLGVPT+SSLLY+EEF+KMK KAPENFR+D+A+SREQ N+KGEKMYIQT
Sbjct: 245 DDYKFNGLAWLFLGVPTTSSLLYQEEFDKMKAKAPENFRVDYAISREQANDKGEKMYIQT 304

Query: 297 RMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQW 356
           RMA+YA ELWELLKKDNT+VYMCGL+GMEKGIDDIMVSLAANDGIDW DYKKQLKK+EQW
Sbjct: 305 RMAQYAAELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAANDGIDWFDYKKQLKKAEQW 364

Query: 357 NVEVY 361
           NVEVY
Sbjct: 365 NVEVY 369

Plays a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9FKW6|FNRL1_ARATH Ferredoxin--NADP reductase, leaf isozyme 1, chloroplastic OS=Arabidopsis thaliana GN=LFNR1 PE=1 SV=1

 Score =  585 bits (1509), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 301/364 (82%), Positives = 327/364 (89%), Gaps = 10/364 (2%)

Query: 2   AAVSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEA-- 59
           AA+SAAVSLP+SKS+SL T+ S +SP RI  +K    Y+      RVVSV+AQVTT+   
Sbjct: 3   AAISAAVSLPSSKSSSLLTKISSVSPQRIFLKKSTVCYR------RVVSVKAQVTTDTTE 56

Query: 60  --PAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPY 117
             P KV KESKK EEG++VNKFKPK PY GRCLLNTKITGDDAPGETWH+VF+TEGEVPY
Sbjct: 57  APPVKVVKESKKQEEGIVVNKFKPKNPYTGRCLLNTKITGDDAPGETWHIVFTTEGEVPY 116

Query: 118 KEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKG 177
           +EGQSIGVI +G+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTN+ GEIVKG
Sbjct: 117 REGQSIGVIPEGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDGGEIVKG 176

Query: 178 VCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE 237
           VCSNFLCDLKPG E KITGPVGKEMLMP+DPNAT+IML TGTGIAPFR FLWKMFFE+HE
Sbjct: 177 VCSNFLCDLKPGDEAKITGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEEHE 236

Query: 238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTR 297
           DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEK P+NFRLDFAVSREQ NEKGEKMYIQTR
Sbjct: 237 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKNPDNFRLDFAVSREQTNEKGEKMYIQTR 296

Query: 298 MAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWN 357
           MAEYA ELWELLKKDNT+VYMCGL+GMEKGIDDIMVSLAA DGIDWL+YKKQLK+SEQWN
Sbjct: 297 MAEYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWLEYKKQLKRSEQWN 356

Query: 358 VEVY 361
           VEVY
Sbjct: 357 VEVY 360

Plays a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|P41344|FENR1_ORYSJ Ferredoxin--NADP reductase, leaf isozyme, chloroplastic OS=Oryza sativa subsp. japonica GN=Os06g0107700 PE=2 SV=1

 Score =  564 bits (1453), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 270/322 (83%), Positives = 294/322 (91%), Gaps = 7/322 (2%)

Query: 47  RVVSVRAQVTT-------EAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDD 99
           R + +RAQV+T        APAK EK SKK +EGV+ NK++PK PY+G+CLLNTKIT DD
Sbjct: 41  RGLLLRAQVSTTDAAAVAAAPAKKEKISKKHDEGVVTNKYRPKEPYVGKCLLNTKITADD 100

Query: 100 APGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVS 159
           APGETWHMVFSTEGE+PY+EGQSIGVIADGVDKN KPHKLRLYSIASSALGDFGDSKTVS
Sbjct: 101 APGETWHMVFSTEGEIPYREGQSIGVIADGVDKNGKPHKLRLYSIASSALGDFGDSKTVS 160

Query: 160 LCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGT 219
           LCVKRLVYTN+ GEIVKGVCSNFLCDLKPG++VKITGPVGKEMLMP+DPNA +IMLATGT
Sbjct: 161 LCVKRLVYTNDQGEIVKGVCSNFLCDLKPGSDVKITGPVGKEMLMPKDPNANIIMLATGT 220

Query: 220 GIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFA 279
           GIAPFR FLWKMFFEK++DYKFNGLAWLFLGVPTSSSLLYKEEF+KMK KAPENFR+D+A
Sbjct: 221 GIAPFRSFLWKMFFEKYDDYKFNGLAWLFLGVPTSSSLLYKEEFDKMKAKAPENFRVDYA 280

Query: 280 VSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAAND 339
           VSREQ N +GEKMYIQTRMAEY  ELWELLKKD+TYVYMCGL+GMEKGIDDIMVSLAA D
Sbjct: 281 VSREQTNAQGEKMYIQTRMAEYKEELWELLKKDHTYVYMCGLKGMEKGIDDIMVSLAAKD 340

Query: 340 GIDWLDYKKQLKKSEQWNVEVY 361
           GIDW DYKKQLKK EQWNVEVY
Sbjct: 341 GIDWADYKKQLKKGEQWNVEVY 362

May play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|Q00598|FENR_CYAPA Ferredoxin--NADP reductase, cyanelle OS=Cyanophora paradoxa GN=PETH PE=1 SV=1

 Score =  418 bits (1075), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/317 (61%), Positives = 239/317 (75%), Gaps = 2/317 (0%)

Query: 47  RVVSVRAQVTTEAPAKVEKES--KKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGET 104
           + VS +   T E    +  ++   K +  + +N F+P  PYIG+C+ N +I G+ APGET
Sbjct: 47  QAVSAKPATTFEVDTTIRAQAVDAKKKGDIPLNLFRPANPYIGKCIYNERIVGEGAPGET 106

Query: 105 WHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR 164
            H++F+ EG+VPY EGQSIG+I  G DK+ KPHKLRLYSIAS+  GDFGD KTVSL VKR
Sbjct: 107 KHIIFTHEGKVPYLEGQSIGIIPPGTDKDGKPHKLRLYSIASTRHGDFGDDKTVSLSVKR 166

Query: 165 LVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPF 224
           L YT+ NG +VKGVCSN+LCDLKPG EV ITGPVG  MLMP D +AT+IMLATGTGIAPF
Sbjct: 167 LEYTDANGNLVKGVCSNYLCDLKPGDEVMITGPVGTTMLMPEDQSATIIMLATGTGIAPF 226

Query: 225 RGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ 284
           R FL +MF E H DYKFNGLAWLFLGVPTSS+LLY+EE EKM++  P NFRLD+A+SREQ
Sbjct: 227 RSFLRRMFEETHADYKFNGLAWLFLGVPTSSTLLYREELEKMQKANPNNFRLDYAISREQ 286

Query: 285 KNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWL 344
            + KGEKMYIQ R+AEYANE W +++K NT+VYMCGLRGME GI   M  +A  +G  W 
Sbjct: 287 TDSKGEKMYIQNRIAEYANEFWNMIQKPNTFVYMCGLRGMEDGIQQCMEDIAKANGTTWD 346

Query: 345 DYKKQLKKSEQWNVEVY 361
              K LKK ++W+VE Y
Sbjct: 347 AVVKGLKKEKRWHVETY 363

May play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power.

Cyanophora paradoxa (taxid: 2762)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

>sp|Q55318|FENR_SYNY3 Ferredoxin--NADP reductase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=petH PE=1 SV=2

 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 163/295 (55%), Positives = 219/295 (74%), Gaps = 1/295 (0%)

Query: 68  KKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIGVI 126
           +K  + + VN ++PKTPYIG+ L N  +  + A G   H+ F  + G++ Y EGQSIG+I
Sbjct: 119 EKKADDIPVNIYRPKTPYIGKVLENYPLVREGAIGTVQHLTFDLSAGDLRYLEGQSIGII 178

Query: 127 ADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDL 186
             G D   KPHKLRLYSIAS+  GDFGD KTVSLCV++L Y NE GE V+GVCS +LC++
Sbjct: 179 PPGEDDKGKPHKLRLYSIASTRHGDFGDDKTVSLCVRQLEYQNEAGETVQGVCSTYLCNI 238

Query: 187 KPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAW 246
           K G ++ ITGPVGKEML+P D +A ++MLATGTGIAPFR FLW+MF E+HEDYKF GLAW
Sbjct: 239 KEGDDIAITGPVGKEMLLPPDEDANIVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGLAW 298

Query: 247 LFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELW 306
           L  G+P S ++LYK++ EKM  + P+NFRL +A+SREQ+N +G +MYIQ R+AE A ELW
Sbjct: 299 LIFGIPKSENILYKDDLEKMAAEFPDNFRLTYAISREQQNAEGGRMYIQHRVAENAEELW 358

Query: 307 ELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
            L++   T+ YMCGL+GME GID+   +LA  +G +W  +++++KK  +W+VE Y
Sbjct: 359 NLMQNPKTHTYMCGLKGMEPGIDEAFTALAEQNGKEWTTFQREMKKEHRWHVETY 413

Essential for growth.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 1

EC: 8

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
356502850	362	PREDICTED: ferredoxin--NADP reductase, l	0.975	0.972	0.872	0.0
356538289	362	PREDICTED: ferredoxin--NADP reductase, l	0.994	0.991	0.899	0.0
225431122	362	PREDICTED: ferredoxin--NADP reductase, l	0.994	0.991	0.902	0.0
356559282	362	PREDICTED: ferredoxin--NADP reductase, l	0.975	0.972	0.872	0.0
147791392	362	hypothetical protein VITISV_042164 [Viti	0.994	0.991	0.899	0.0
6899972	362	chloroplast ferredoxin-NADP+ oxidoreduct	0.994	0.991	0.871	0.0
224074257	363	predicted protein [Populus trichocarpa]	0.997	0.991	0.867	1e-180
255538962	362	ferredoxin--NADP reductase, putative [Ri	0.994	0.991	0.828	1e-178
307136095	360	ferredoxin--NADP reductase [Cucumis melo	0.963	0.966	0.887	1e-177
119905	360	RecName: Full=Ferredoxin--NADP reductase	0.991	0.994	0.841	1e-176

>gi|356502850|ref|XP_003520228.1| PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like isoform 1 [Glycine max]

 Score =  662 bits (1708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/352 (87%), Positives = 334/352 (94%)

Query: 10  LPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAKVEKESKK 69
            P++KSTSLP+RTS+I+P+R+ F+K     +DVS+ GRVVS+RAQVTTEAPAKVEKESKK
Sbjct: 11  FPSTKSTSLPSRTSLIAPERVVFKKASLQNRDVSSSGRVVSIRAQVTTEAPAKVEKESKK 70

Query: 70  MEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADG 129
            +EGV+VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE+PY+EGQSIGVI DG
Sbjct: 71  QDEGVVVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDG 130

Query: 130 VDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPG 189
           +DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPG
Sbjct: 131 IDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPG 190

Query: 190 AEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFL 249
           AEV ITGPVGKEMLMP+DPNAT+IML TGTGIAPFR FLWKMFFEKHEDYKFNGLAWLFL
Sbjct: 191 AEVTITGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHEDYKFNGLAWLFL 250

Query: 250 GVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELL 309
           GVPTSSSLLYKEEFEKM+EK+PENFRLDFAVSREQ NEKGEKMYIQTRMA+YA ELWELL
Sbjct: 251 GVPTSSSLLYKEEFEKMQEKSPENFRLDFAVSREQTNEKGEKMYIQTRMAQYAEELWELL 310

Query: 310 KKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           KKDNT+VYMCGL+GMEKGIDDIMVSLAA DGIDW +YK+QLKK+EQWNVEVY
Sbjct: 311 KKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWTEYKRQLKKAEQWNVEVY 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538289|ref|XP_003537636.1| PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like isoform 1 [Glycine max]

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/359 (89%), Positives = 342/359 (95%)

Query: 3   AVSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAK 62
           AV+AAVS P +KSTSL +RTSI +PDRI F+KV   Y+DVST GRVVS+RAQVTTEAPAK
Sbjct: 4   AVTAAVSFPATKSTSLSSRTSITAPDRIVFKKVSLQYRDVSTSGRVVSIRAQVTTEAPAK 63

Query: 63  VEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQS 122
           VEKESKK EEGVIVNKFKPK PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPY+EGQS
Sbjct: 64  VEKESKKQEEGVIVNKFKPKNPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQS 123

Query: 123 IGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNF 182
           IGVI DGVDKN KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE+VKGVCSNF
Sbjct: 124 IGVIPDGVDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGELVKGVCSNF 183

Query: 183 LCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN 242
           LCDLKPGAEVKITGPVGKEMLMP+DPNATVIMLATGTGIAPFR FLWKMFFEKH+DYKFN
Sbjct: 184 LCDLKPGAEVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFFEKHDDYKFN 243

Query: 243 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYA 302
           GLAWLFLGVPTSSSLLYKEEFEKMKEKAP+NFRLDFAVSREQ NEKGEKMYIQTRMA+YA
Sbjct: 244 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYA 303

Query: 303 NELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
            ELWELLKKDNT+VYMCGL+GMEKGIDDIMVSLAA DGIDW++YK+QLKK+EQWNVEVY
Sbjct: 304 EELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRQLKKAEQWNVEVY 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431122|ref|XP_002265774.1| PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic isoform 1 [Vitis vinifera] gi|297735008|emb|CBI17370.3| unnamed protein product [Vitis vinifera]

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/359 (90%), Positives = 344/359 (95%)

Query: 3   AVSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAK 62
           AV+AAVSLP+SK+TSL  RTSIISP+RI+ +KVP +Y+D+S GGRVVS+RAQVTTEAPAK
Sbjct: 4   AVTAAVSLPSSKTTSLSARTSIISPERISLKKVPLFYRDISAGGRVVSIRAQVTTEAPAK 63

Query: 63  VEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQS 122
           VEK SKK EEGVIVNKFKPK PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPY+EGQS
Sbjct: 64  VEKISKKNEEGVIVNKFKPKNPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQS 123

Query: 123 IGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNF 182
           IGVIADGVDKN KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE+VKGVCSNF
Sbjct: 124 IGVIADGVDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGELVKGVCSNF 183

Query: 183 LCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN 242
           LCDLKPGAEVKITGPVGKEMLMP+DPNAT+IMLATGTGIAPFR FLWKMFFEKHEDYKFN
Sbjct: 184 LCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHEDYKFN 243

Query: 243 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYA 302
           GLAWLFLGVPTSSSLLYKEEFEKMKEK PENFRLDFAVSREQ N KGEKMYIQTRMAEYA
Sbjct: 244 GLAWLFLGVPTSSSLLYKEEFEKMKEKKPENFRLDFAVSREQSNAKGEKMYIQTRMAEYA 303

Query: 303 NELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
            ELWELLKKDNTYVYMCGL+GMEKGIDDIMVSLAA DGIDW++YK+QLK++EQWNVEVY
Sbjct: 304 EELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLAARDGIDWIEYKRQLKRAEQWNVEVY 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559282|ref|XP_003547929.1| PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic-like isoform 1 [Glycine max]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/352 (87%), Positives = 332/352 (94%)

Query: 10  LPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAKVEKESKK 69
            P++KSTSLP+RTSII+P+R+ F+K    Y+DV + GRVVS+RAQVTTEAPAKVEKESKK
Sbjct: 11  FPSTKSTSLPSRTSIITPERVVFKKASLQYRDVCSSGRVVSIRAQVTTEAPAKVEKESKK 70

Query: 70  MEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADG 129
            +EGV+VNKFKPKTPY+GRCLLNTKITGDDAPGETWHMVFSTEGE+PY+EGQSIGVI DG
Sbjct: 71  QDEGVVVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDG 130

Query: 130 VDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPG 189
           VDKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPG
Sbjct: 131 VDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPG 190

Query: 190 AEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFL 249
           AEV ITGPVGKEMLMP+DPNAT+IML TGTGIAPFR FLWKMFFEKHEDYKFNGLAWLFL
Sbjct: 191 AEVTITGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHEDYKFNGLAWLFL 250

Query: 250 GVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELL 309
           GVPTSSSLLYKEEFEKM+EK P+NFRLDFAVSREQ NE GEKMYIQTRMA+YA ELWELL
Sbjct: 251 GVPTSSSLLYKEEFEKMQEKYPDNFRLDFAVSREQTNENGEKMYIQTRMAQYAEELWELL 310

Query: 310 KKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           KKDNT+VYMCGL+GMEKGIDDIMVSLAA DGIDW +YK+QLKKSEQWNVEVY
Sbjct: 311 KKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWTEYKRQLKKSEQWNVEVY 362

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147791392|emb|CAN59785.1| hypothetical protein VITISV_042164 [Vitis vinifera]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/359 (89%), Positives = 343/359 (95%)

Query: 3   AVSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAK 62
           AV+AAVSLP+SK+TSL  RTSIISP+RI+ +KVP +Y+D+S GGRVVS+RAQVTTEAPAK
Sbjct: 4   AVTAAVSLPSSKTTSLSARTSIISPERISLKKVPLFYRDISAGGRVVSIRAQVTTEAPAK 63

Query: 63  VEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQS 122
           VEK SKK EEGVIVNKFKPK PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPY+EGQS
Sbjct: 64  VEKISKKNEEGVIVNKFKPKNPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQS 123

Query: 123 IGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNF 182
           IGVIADGVDKN KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE+VKGVCSNF
Sbjct: 124 IGVIADGVDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGELVKGVCSNF 183

Query: 183 LCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN 242
           LCDLKPG EVKITGPVGKEMLMP+DPNAT+IMLATGTGIAPFR FLWKMFFEKHEDYKFN
Sbjct: 184 LCDLKPGXEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHEDYKFN 243

Query: 243 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYA 302
           GLAWLFLGVPTSSSLLYKEEFEKMKEK PENFRLDFAVSREQ N KGEKMYIQTRMAEYA
Sbjct: 244 GLAWLFLGVPTSSSLLYKEEFEKMKEKKPENFRLDFAVSREQSNAKGEKMYIQTRMAEYA 303

Query: 303 NELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
            ELWELLKKDNTYVYMCGL+GMEKGIDDIMVSLAA DGIDW++YK+QLK++EQWNVEVY
Sbjct: 304 EELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLAARDGIDWIEYKRQLKRAEQWNVEVY 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6899972|emb|CAB71293.1| chloroplast ferredoxin-NADP+ oxidoreductase precursor [Capsicum annuum]

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/359 (87%), Positives = 338/359 (94%)

Query: 3   AVSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAK 62
           AV+AAVSLP+SKSTS PTRTSIISP++I F KVP YY++VS G ++V++RAQVTTEAPAK
Sbjct: 4   AVTAAVSLPSSKSTSFPTRTSIISPEKINFNKVPLYYRNVSGGSKLVTIRAQVTTEAPAK 63

Query: 63  VEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQS 122
           VEK SKK +EGV+VNKF+PK PYIGRCLLNTKITGDDAPGETWHMVFSTEGE+PY+EGQS
Sbjct: 64  VEKISKKQDEGVVVNKFRPKEPYIGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQS 123

Query: 123 IGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNF 182
           IGVIADGVD N KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN+ GE VKGVCSNF
Sbjct: 124 IGVIADGVDANGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDKGEEVKGVCSNF 183

Query: 183 LCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN 242
           LCDLKPGA+VKITGPVGKEMLMP+DPNATVIML TGTGIAPFR FLWKMFFEKH+DYKFN
Sbjct: 184 LCDLKPGADVKITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHDDYKFN 243

Query: 243 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYA 302
           GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ NEKGEKMYIQTRMA+YA
Sbjct: 244 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNEKGEKMYIQTRMAQYA 303

Query: 303 NELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
            ELW LLKKDNT+VYMCGL+GME+GIDDIM SLAA +GIDW DYKKQLKK+EQWNVEVY
Sbjct: 304 EELWTLLKKDNTFVYMCGLKGMEQGIDDIMSSLAAKEGIDWADYKKQLKKAEQWNVEVY 362

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074257|ref|XP_002304324.1| predicted protein [Populus trichocarpa] gi|222841756|gb|EEE79303.1| predicted protein [Populus trichocarpa]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 313/361 (86%), Positives = 337/361 (93%), Gaps = 1/361 (0%)

Query: 2   AAVSAAVSLPTS-KSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAP 60
           AAV+AAVS P+S KSTSLP+RT +I+P+RIT RKVP +++DVS  GRV+S+RAQVTTEAP
Sbjct: 3   AAVTAAVSFPSSTKSTSLPSRTILIAPERITLRKVPVHFRDVSASGRVISIRAQVTTEAP 62

Query: 61  AKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEG 120
           AKVEK SKK EEGV+VNKFKPK PY GRCLLNTKITGDDAPGETWHMVFSTEGEVPY+EG
Sbjct: 63  AKVEKVSKKNEEGVVVNKFKPKNPYTGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREG 122

Query: 121 QSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCS 180
           QSIGVI DG+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTN+ GEIVKGVCS
Sbjct: 123 QSIGVIPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCS 182

Query: 181 NFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYK 240
           NFLCDLKPGAEV ITGPVGKEMLMP+DPNATVIML TGTGIAPFR FLWKMFFEKH+DYK
Sbjct: 183 NFLCDLKPGAEVSITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHDDYK 242

Query: 241 FNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAE 300
           FNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP+NFRLDFAVSREQ N KGEKMYIQTRMAE
Sbjct: 243 FNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNAKGEKMYIQTRMAE 302

Query: 301 YANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEV 360
           YA ELWELLKKDNTYVYMCGL+GMEKGIDDIMVSLAA + IDWL+YK+ LKK+ QWNVEV
Sbjct: 303 YAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLAAKEEIDWLEYKRSLKKAGQWNVEV 362

Query: 361 Y 361
           Y
Sbjct: 363 Y 363

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538962|ref|XP_002510546.1| ferredoxin--NADP reductase, putative [Ricinus communis] gi|223551247|gb|EEF52733.1| ferredoxin--NADP reductase, putative [Ricinus communis]

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 299/361 (82%), Positives = 332/361 (91%), Gaps = 2/361 (0%)

Query: 2   AAVSAAVSLPTSKSTS-LPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAP 60
           A V+AAVSLPT+KS+S LP R S  +P+RI+F K   Y ++VS  GR ++V+AQVTTEAP
Sbjct: 3   ATVNAAVSLPTTKSSSSLPARIST-TPERISFNKGFLYSRNVSFSGRTLTVKAQVTTEAP 61

Query: 61  AKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEG 120
           AKV KESKK +EGV VNKFKPK PY+G CLLNTKITGDDAPGETWHMVFSTEGE+PY+EG
Sbjct: 62  AKVVKESKKNDEGVTVNKFKPKNPYVGTCLLNTKITGDDAPGETWHMVFSTEGEIPYREG 121

Query: 121 QSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCS 180
           QSIG+I DG+DKN KP+KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE GEIVKGVCS
Sbjct: 122 QSIGIIPDGIDKNGKPYKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNEQGEIVKGVCS 181

Query: 181 NFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYK 240
           NFLCDLKPGA V +TGPVGKEMLMP+DPNAT+IMLATGTGIAPFR FLWKMFFEKHEDYK
Sbjct: 182 NFLCDLKPGAAVTMTGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHEDYK 241

Query: 241 FNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAE 300
           FNGLAWLFLGVPTSSSLLY +EF+KMKEKAPENFR+D+AVSREQ N+KG+KMYIQTRMA+
Sbjct: 242 FNGLAWLFLGVPTSSSLLYPDEFQKMKEKAPENFRVDYAVSREQTNDKGDKMYIQTRMAQ 301

Query: 301 YANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEV 360
           YA ELWELLKKDNTYVYMCGL+GMEKGIDDIMV+LAA DGIDW++YK+QLKKSEQWNVEV
Sbjct: 302 YAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVNLAARDGIDWIEYKRQLKKSEQWNVEV 361

Query: 361 Y 361
           Y
Sbjct: 362 Y 362

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136095|gb|ADN33943.1| ferredoxin--NADP reductase [Cucumis melo subsp. melo]

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 315/355 (88%), Positives = 329/355 (92%), Gaps = 7/355 (1%)

Query: 9   SLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVV--SVRAQVTTEAPAKVEKE 66
           S P SKS+SLP+RT +ISPDRI  +KVP +Y     GGRV    +RAQVTTEAPAKVEKE
Sbjct: 11  SFP-SKSSSLPSRTPLISPDRIFLKKVPVFYH----GGRVAVSPIRAQVTTEAPAKVEKE 65

Query: 67  SKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVI 126
           SKK EEG++VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVI
Sbjct: 66  SKKQEEGIVVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVI 125

Query: 127 ADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDL 186
           ADG DKN KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE GEIVKGVCSNFLCDL
Sbjct: 126 ADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNEQGEIVKGVCSNFLCDL 185

Query: 187 KPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAW 246
           KPGAEVKITGPVGKEMLMP+DPNATVIMLATGTGIAPFR FLWKMFFEKHEDYKFNGLAW
Sbjct: 186 KPGAEVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFFEKHEDYKFNGLAW 245

Query: 247 LFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELW 306
           LFLGVPTSSSLLYKEEFEKMKEK PENFRLDFAVSREQ NEKGEKMYIQTRMAEYA ELW
Sbjct: 246 LFLGVPTSSSLLYKEEFEKMKEKYPENFRLDFAVSREQTNEKGEKMYIQTRMAEYAEELW 305

Query: 307 ELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           ELLKKDNT+VYMCGL+GMEKGIDDIM SLAA DGIDW +YK+QLK+SEQWNVEVY
Sbjct: 306 ELLKKDNTFVYMCGLKGMEKGIDDIMDSLAARDGIDWQEYKRQLKRSEQWNVEVY 360

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119905|sp|P10933.1|FENR1_PEA RecName: Full=Ferredoxin--NADP reductase, leaf isozyme, chloroplastic; Short=FNR; Flags: Precursor gi|20722|emb|CAA30978.1| unnamed protein product [Pisum sativum] gi|226545|prf||1601517A ferredoxin NADP reductase

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 303/360 (84%), Positives = 334/360 (92%), Gaps = 2/360 (0%)

Query: 2   AAVSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPA 61
           AAV+AAVSLP S STSLP RTSI++P+R+ F+KV     +VS  GRV ++RAQVTTEAPA
Sbjct: 3   AAVTAAVSLPYSNSTSLPIRTSIVAPERLVFKKVSL--NNVSISGRVGTIRAQVTTEAPA 60

Query: 62  KVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQ 121
           KV K SKK +E ++VNKFKPK PY+GRCLLNTKITGDDAPGETWHMVFSTEGEVPY+EGQ
Sbjct: 61  KVVKHSKKQDENIVVNKFKPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQ 120

Query: 122 SIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSN 181
           SIG++ DG+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTN+ GE+VKGVCSN
Sbjct: 121 SIGIVPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSN 180

Query: 182 FLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF 241
           FLCDLKPG+EVKITGPVGKEMLMP+DPNATVIML TGTGIAPFR FLWKMFFEKHEDY+F
Sbjct: 181 FLCDLKPGSEVKITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQF 240

Query: 242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY 301
           NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ N+KGEKMYIQTRMA+Y
Sbjct: 241 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMYIQTRMAQY 300

Query: 302 ANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           A ELWELLKKDNT+VYMCGL+GMEKGIDDIMVSLAA DGIDW++YK+ LKK+EQWNVEVY
Sbjct: 301 AEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVY 360

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
UNIPROTKB|P10933	360	PETH "Ferredoxin--NADP reducta	0.991	0.994	0.808	1.9e-161
UNIPROTKB|P00455	369	PETH "Ferredoxin--NADP reducta	0.994	0.972	0.784	4.6e-160
TAIR|locus:2156917	360	FNR1 "AT5G66190" [Arabidopsis	0.980	0.983	0.799	4.3e-157
TAIR|locus:2198651	369	FNR2 "AT1G20020" [Arabidopsis	0.991	0.970	0.769	4e-154
UNIPROTKB|P21890	440	petH "Ferredoxin--NADP reducta	0.819	0.672	0.536	3.3e-86
TAIR|locus:2115964	378	RFNR1 "root FNR 1" [Arabidopsi	0.786	0.751	0.530	1.9e-76
TAIR|locus:2028145	382	RFNR2 "root FNR 2" [Arabidopsi	0.783	0.740	0.525	1.3e-75
UNIPROTKB|Q5LM61	372	boxA "Benzoyl-CoA oxygenase, A	0.739	0.717	0.350	8.7e-40
TIGR_CMR|SPO_3703	372	SPO_3703 "benzoyl-CoA oxygenas	0.739	0.717	0.350	8.7e-40
UNIPROTKB|Q9KUX4	614	cysJ "Sulfite reductase [NADPH	0.573	0.337	0.344	5.5e-25

UNIPROTKB|P10933 PETH "Ferredoxin--NADP reductase, leaf isozyme, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 1572 (558.4 bits), Expect = 1.9e-161, P = 1.9e-161
 Identities = 291/360 (80%), Positives = 322/360 (89%)

Query:     2 AAVSAAVXXXXXXXXXXXXXXXIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPA 61
             AAV+AAV               I++P+R+ F+KV     +VS  GRV ++RAQVTTEAPA
Sbjct:     3 AAVTAAVSLPYSNSTSLPIRTSIVAPERLVFKKVSL--NNVSISGRVGTIRAQVTTEAPA 60

Query:    62 KVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQ 121
             KV K SKK +E ++VNKFKPK PY+GRCLLNTKITGDDAPGETWHMVFSTEGEVPY+EGQ
Sbjct:    61 KVVKHSKKQDENIVVNKFKPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQ 120

Query:   122 SIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSN 181
             SIG++ DG+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTN+ GE+VKGVCSN
Sbjct:   121 SIGIVPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSN 180

Query:   182 FLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF 241
             FLCDLKPG+EVKITGPVGKEMLMP+DPNATVIML TGTGIAPFR FLWKMFFEKHEDY+F
Sbjct:   181 FLCDLKPGSEVKITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQF 240

Query:   242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY 301
             NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ N+KGEKMYIQTRMA+Y
Sbjct:   241 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMYIQTRMAQY 300

Query:   302 ANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
             A ELWELLKKDNT+VYMCGL+GMEKGIDDIMVSLAA DGIDW++YK+ LKK+EQWNVEVY
Sbjct:   301 AEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVY 360

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P00455 PETH "Ferredoxin--NADP reductase, chloroplastic" [Spinacia oleracea (taxid:3562)]

 Score = 1559 (553.9 bits), Expect = 4.6e-160, P = 4.6e-160
 Identities = 287/366 (78%), Positives = 324/366 (88%)

Query:     3 AVSAAVXX-XXXXXXXXXXXXXIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTE--- 58
             AV+AAV                +ISPD+I+++KVP YY++VS  G++  +RAQ+ ++   
Sbjct:     4 AVTAAVSFPSTKTTSLSARSSSVISPDKISYKKVPLYYRNVSATGKMGPIRAQIASDVEA 63

Query:    59 ---APAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEV 115
                APAKVEK SKKMEEG+ VNKFKPKTPY+GRCLLNTKITGDDAPGETWHMVFS EGE+
Sbjct:    64 PPPAPAKVEKHSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGEI 123

Query:   116 PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIV 175
             PY+EGQS+GVI DG DKN KPHKLRLYSIASSALGDFGD+K+VSLCVKRL+YTN+ GE +
Sbjct:   124 PYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETI 183

Query:   176 KGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK 235
             KGVCSNFLCDLKPGAEVK+TGPVGKEMLMP+DPNAT+IML TGTGIAPFR FLWKMFFEK
Sbjct:   184 KGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEK 243

Query:   236 HEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQ 295
             H+DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP+NFRLDFAVSREQ NEKGEKMYIQ
Sbjct:   244 HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQ 303

Query:   296 TRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQ 355
             TRMA+YA ELWE+LKKDNTY YMCGL+GMEKGIDDIMVSLAA +GIDW++YK+QLKK+EQ
Sbjct:   304 TRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQ 363

Query:   356 WNVEVY 361
             WNVEVY
Sbjct:   364 WNVEVY 369

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2156917 FNR1 "AT5G66190" [Arabidopsis thaliana (taxid:3702)]

 Score = 1531 (544.0 bits), Expect = 4.3e-157, P = 4.3e-157
 Identities = 291/364 (79%), Positives = 314/364 (86%)

Query:     2 AAVSAAVXXXXXXXXXXXXXXXIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEA-- 59
             AA+SAAV                +SP RI  +K    Y+      RVVSV+AQVTT+   
Sbjct:     3 AAISAAVSLPSSKSSSLLTKISSVSPQRIFLKKSTVCYR------RVVSVKAQVTTDTTE 56

Query:    60 --PAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPY 117
               P KV KESKK EEG++VNKFKPK PY GRCLLNTKITGDDAPGETWH+VF+TEGEVPY
Sbjct:    57 APPVKVVKESKKQEEGIVVNKFKPKNPYTGRCLLNTKITGDDAPGETWHIVFTTEGEVPY 116

Query:   118 KEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKG 177
             +EGQSIGVI +G+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTN+ GEIVKG
Sbjct:   117 REGQSIGVIPEGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDGGEIVKG 176

Query:   178 VCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE 237
             VCSNFLCDLKPG E KITGPVGKEMLMP+DPNAT+IML TGTGIAPFR FLWKMFFE+HE
Sbjct:   177 VCSNFLCDLKPGDEAKITGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEEHE 236

Query:   238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTR 297
             DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEK P+NFRLDFAVSREQ NEKGEKMYIQTR
Sbjct:   237 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKNPDNFRLDFAVSREQTNEKGEKMYIQTR 296

Query:   298 MAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWN 357
             MAEYA ELWELLKKDNT+VYMCGL+GMEKGIDDIMVSLAA DGIDWL+YKKQLK+SEQWN
Sbjct:   297 MAEYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWLEYKKQLKRSEQWN 356

Query:   358 VEVY 361
             VEVY
Sbjct:   357 VEVY 360

GO:0003959 "NADPH dehydrogenase activity" evidence=IDA

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IDA

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0045156 "electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity" evidence=IDA

GO:0045157 "electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity" evidence=IDA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP

GO:0048046 "apoplast" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2198651 FNR2 "AT1G20020" [Arabidopsis thaliana (taxid:3702)]

 Score = 1503 (534.1 bits), Expect = 4.0e-154, P = 4.0e-154
 Identities = 281/365 (76%), Positives = 318/365 (87%)

Query:     4 VSAAVXXXXXXXXXXXXXXXIISPDRITFRKVPFYYK--DVSTGGRVVSVRAQVTTEA-- 59
             ++AAV                I+P+RI F K  FYYK  +V TG RV S++AQ+TTE   
Sbjct:     5 MNAAVSLTSSNSSSFPATSCAIAPERIRFTKGAFYYKSNNVVTGKRVFSIKAQITTETDT 64

Query:    60 --PAK-VEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVP 116
               PAK VEK SKK EEGVIVN+++PK PY G+CLLNTKIT DDAPGETWHMVFS +GE+P
Sbjct:    65 PTPAKKVEKVSKKNEEGVIVNRYRPKEPYTGKCLLNTKITADDAPGETWHMVFSHQGEIP 124

Query:   117 YKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVK 176
             Y+EGQS+GVIADG+DKN KPHK+RLYSIASSALGD G+S+TVSLCVKRLVYTN+ GE VK
Sbjct:   125 YREGQSVGVIADGIDKNGKPHKVRLYSIASSALGDLGNSETVSLCVKRLVYTNDQGETVK 184

Query:   177 GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH 236
             GVCSNFLCDL PG++VK+TGPVGKEMLMP+DPNATVIMLATGTGIAPFR FLWKMFFEKH
Sbjct:   185 GVCSNFLCDLAPGSDVKLTGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFFEKH 244

Query:   237 EDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQT 296
             +DYKFNGLAWLFLGVPT+SSLLY+EEF+KMK KAPENFR+D+A+SREQ N+KGEKMYIQT
Sbjct:   245 DDYKFNGLAWLFLGVPTTSSLLYQEEFDKMKAKAPENFRVDYAISREQANDKGEKMYIQT 304

Query:   297 RMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQW 356
             RMA+YA ELWELLKKDNT+VYMCGL+GMEKGIDDIMVSLAANDGIDW DYKKQLKK+EQW
Sbjct:   305 RMAQYAAELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAANDGIDWFDYKKQLKKAEQW 364

Query:   357 NVEVY 361
             NVEVY
Sbjct:   365 NVEVY 369

GO:0003959 "NADPH dehydrogenase activity" evidence=IDA

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|P21890 petH "Ferredoxin--NADP reductase" [Nostoc sp. PCC 7119 (taxid:1168)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 162/302 (53%), Positives = 219/302 (72%)

Query:    66 ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
             ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct:   139 QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 198

Query:   125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
             +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct:   199 IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 258

Query:   184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE----DY 239
               ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +       +Y
Sbjct:   259 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 318

Query:   240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
             +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct:   319 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 378

Query:   300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
             E+A+ELW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct:   379 EHADELWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 438

Query:   360 VY 361
              Y
Sbjct:   439 TY 440

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0050660 "flavin adenine dinucleotide binding" evidence=TAS

GO:0050661 "NADP binding" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IDA

TAIR|locus:2115964 RFNR1 "root FNR 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
 Identities = 156/294 (53%), Positives = 202/294 (68%)

Query:    76 VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVD--KN 133
             +N F+PK PY    +   +I G  APGET H+V   +G VPY EGQS GVI  G +  K 
Sbjct:    87 LNLFRPKEPYTATIVSVERIVGPQAPGETCHIVIDHDGNVPYWEGQSYGVIPPGENPKKP 146

Query:   134 AKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGE---IVKGVCSNFLCDLKPG 189
               PH +RLYSIAS+  GD  D KT SLCV+R +Y + E G+      GVCSNFLC+ KPG
Sbjct:   147 GAPHNVRLYSIASTRYGDSFDGKTASLCVRRAIYYDPETGKEDPSKAGVCSNFLCNAKPG 206

Query:   190 AEVKITGPVGKEMLMPRD-PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLF 248
              +VKITGP GK ML+P D P AT IM+ATGTG+AP+RG+L +MF E   ++KF+GLAWLF
Sbjct:   207 DKVKITGPSGKVMLLPEDDPKATHIMIATGTGVAPYRGYLRRMFMENVPNFKFDGLAWLF 266

Query:   249 LGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL 308
             LGV  S SLLY EEF   ++  PENFR D A+SRE+KN+KG KMY+Q ++ EY++E+++L
Sbjct:   267 LGVANSDSLLYDEEFAGYRKDYPENFRYDKALSREEKNKKGGKMYVQDKIEEYSDEIFKL 326

Query:   309 LKKDN-TYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
             L  DN  ++Y CGL+GM  GI D +  +A   G  W     QL+K++QW+VEVY
Sbjct:   327 L--DNGAHIYFCGLKGMMPGIQDTLKRVAEERGESWEQKLTQLRKNKQWHVEVY 378

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0042651 "thylakoid membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IDA

TAIR|locus:2028145 RFNR2 "root FNR 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 155/295 (52%), Positives = 204/295 (69%)

Query:    76 VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVD--KN 133
             +N +KPK  Y  + +   ++ G  APGET H+V   +G +PY EGQS GVI  G +  K 
Sbjct:    91 LNLYKPKESYTAKIVSVERVVGPKAPGETCHIVIDHDGNLPYWEGQSYGVIPPGENPKKP 150

Query:   134 AKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGE---IVKGVCSNFLCDLKPG 189
               PH +RLYSIAS+  GDF D KT SLCV+R VY + E G+      GVCSNFLCD KPG
Sbjct:   151 GAPHNVRLYSIASTRYGDFFDGKTASLCVRRAVYYDPETGKEDPSKNGVCSNFLCDSKPG 210

Query:   190 AEVKITGPVGKEMLMPR-DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLF 248
              +++ITGP GK ML+P  DPNAT IM+ATGTG+AP+RG+L +MF E   +  F+GLAWLF
Sbjct:   211 DKIQITGPSGKVMLLPESDPNATHIMIATGTGVAPYRGYLRRMFMENVPNKTFSGLAWLF 270

Query:   249 LGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL 308
             LGV  + SLLY EEF K  +  P+NFR D A+SRE+KN+KG KMY+Q ++ EY++E+++L
Sbjct:   271 LGVANTDSLLYDEEFTKYLKDHPDNFRFDKALSREEKNKKGGKMYVQDKIEEYSDEIFKL 330

Query:   309 LKKDN-TYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYK-KQLKKSEQWNVEVY 361
             L  DN  ++Y CGL+GM  GI D +  +A   G  W D K  QL+K++QW+VEVY
Sbjct:   331 L--DNGAHIYFCGLKGMMPGIQDTLKRVAEERGESW-DLKLSQLRKNKQWHVEVY 382

GO:0004324 "ferredoxin-NADP+ reductase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0042651 "thylakoid membrane" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005507 "copper ion binding" evidence=IDA

UNIPROTKB|Q5LM61 boxA "Benzoyl-CoA oxygenase, A subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 101/288 (35%), Positives = 150/288 (52%)

Query:    76 VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNA 134
             +N +    P   R   N ++T + +  +  H++    G+  P  EGQSIG+I  G D+  
Sbjct:   104 INLYTLGKPAEARVTGNYRLTAESSDSDVRHIILDFGGQPFPVLEGQSIGIIPPGTDEAG 163

Query:   135 KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKI 194
              PH  RLYS++S   G+  +   +SL VKR  +         G+CSN +CDLKPG  V++
Sbjct:   164 NPHLPRLYSVSSPRDGERPNFNNLSLTVKREPH---------GICSNHVCDLKPGDTVRV 214

Query:   195 TGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS 254
             TGP G   LMP DP A ++M+ TGTG APFR F  +    + E  K      L  G    
Sbjct:   215 TGPFGATFLMPSDPAAHLLMICTGTGSAPFRAFTMR---RQRESPKLRNSLTLVFGARRP 271

Query:   255 SSLLYKEEFEKMKEKAPENFRLD-FAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDN 313
               L Y   F  +  K PE F    FA SR+   +   K Y+Q R+   A+ + ELL    
Sbjct:   272 QELPY---FGPLA-KVPEQFMAKHFAFSRQ---DGAPKHYVQDRLRAEADRVGELLADPL 324

Query:   314 TYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
             T+VY+CGL+ ME+G+++    +A   GIDW   + +++   +++VE Y
Sbjct:   325 THVYVCGLKAMEQGVEEAFKDIARAQGIDWTGLRDRMRDEGRYHVETY 372

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

GO:0018874 "benzoate metabolic process" evidence=ISS

TIGR_CMR|SPO_3703 SPO_3703 "benzoyl-CoA oxygenase, A subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 101/288 (35%), Positives = 150/288 (52%)

Query:    76 VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNA 134
             +N +    P   R   N ++T + +  +  H++    G+  P  EGQSIG+I  G D+  
Sbjct:   104 INLYTLGKPAEARVTGNYRLTAESSDSDVRHIILDFGGQPFPVLEGQSIGIIPPGTDEAG 163

Query:   135 KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKI 194
              PH  RLYS++S   G+  +   +SL VKR  +         G+CSN +CDLKPG  V++
Sbjct:   164 NPHLPRLYSVSSPRDGERPNFNNLSLTVKREPH---------GICSNHVCDLKPGDTVRV 214

Query:   195 TGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS 254
             TGP G   LMP DP A ++M+ TGTG APFR F  +    + E  K      L  G    
Sbjct:   215 TGPFGATFLMPSDPAAHLLMICTGTGSAPFRAFTMR---RQRESPKLRNSLTLVFGARRP 271

Query:   255 SSLLYKEEFEKMKEKAPENFRLD-FAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDN 313
               L Y   F  +  K PE F    FA SR+   +   K Y+Q R+   A+ + ELL    
Sbjct:   272 QELPY---FGPLA-KVPEQFMAKHFAFSRQ---DGAPKHYVQDRLRAEADRVGELLADPL 324

Query:   314 TYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
             T+VY+CGL+ ME+G+++    +A   GIDW   + +++   +++VE Y
Sbjct:   325 THVYVCGLKAMEQGVEEAFKDIARAQGIDWTGLRDRMRDEGRYHVETY 372

GO:0016709 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen" evidence=ISS

GO:0018874 "benzoate metabolic process" evidence=ISS

UNIPROTKB|Q9KUX4 cysJ "Sulfite reductase [NADPH] flavoprotein alpha-component" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 259 (96.2 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
 Identities = 79/229 (34%), Positives = 119/229 (51%)

Query:   140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPV 198
             RLYSIASS   + G+   V L V  + Y  E GE   G  S+FL   L+ GA VK+    
Sbjct:   401 RLYSIASSQ-SEVGEE--VHLTVGVVEYEYE-GEQRLGGASSFLAHQLEEGAPVKVFVEH 456

Query:   199 GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPT-SSSL 257
                  +P D NA +IM+  GTGIAPFR F+     ++ E+    G  WL  G  T +   
Sbjct:   457 NNNFKLPSDDNAPLIMVGPGTGIAPFRSFI-----QERENRGAAGKNWLLFGDRTFTQDF 511

Query:   258 LYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVY 317
             LY+ E++K  +    N RLD A SR+Q     EK+Y+Q R+ E A  +W+ L+ +  Y Y
Sbjct:   512 LYQVEWQKYLKSGVLN-RLDVAFSRDQH----EKVYVQHRLLEQAELVWQWLQ-EGAYFY 565

Query:   318 MCG-LRGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361
             +CG    M K +   ++++    G        +Y  +L+K++++  +VY
Sbjct:   566 VCGDASRMAKDVHQALITVVEQQGGLNREQAEEYVSELRKAKRYQRDVY 614

GO:0004783 "sulfite reductase (NADPH) activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

GO:0009337 "sulfite reductase complex (NADPH)" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W493	FNRL2_ARATH	1, ., 1, 8, ., 1, ., 2	0.7863	0.9916	0.9701	yes	no
Q00598	FENR_CYAPA	1, ., 1, 8, ., 1, ., 2	0.6182	0.8725	0.8677	N/A	no
P41346	FENR_VICFA	1, ., 1, 8, ., 1, ., 2	0.8236	0.9916	0.9862	N/A	no
P41344	FENR1_ORYSJ	1, ., 1, 8, ., 1, ., 2	0.8385	0.8725	0.8701	yes	no
Q44549	FENR_ANAVT	1, ., 1, 8, ., 1, ., 2	0.5364	0.8199	0.6727	yes	no
Q93RE3	FENR_THEEB	1, ., 1, 8, ., 1, ., 2	0.5319	0.8781	0.8212	yes	no
Q9FKW6	FNRL1_ARATH	1, ., 1, 8, ., 1, ., 2	0.8269	0.9806	0.9833	no	no
P41343	FENR_MESCR	1, ., 1, 8, ., 1, ., 2	0.8374	0.9972	0.9863	N/A	no
P58558	FENR_NOSS1	1, ., 1, 8, ., 1, ., 2	0.5364	0.8199	0.6727	yes	no
P00455	FENR_SPIOL	1, ., 1, 8, ., 1, ., 2	0.8060	0.9944	0.9728	N/A	no
P10933	FENR1_PEA	1, ., 1, 8, ., 1, ., 2	0.8416	0.9916	0.9944	N/A	no
O04977	FENR1_TOBAC	1, ., 1, 8, ., 1, ., 2	0.8662	0.9944	0.9917	N/A	no
P31973	FENR_SYNP2	1, ., 1, 8, ., 1, ., 2	0.4836	0.9390	0.8432	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.18.1.2	0.994
3rd Layer	1.18.1	0.998

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036774001	RecName- Full=Ferredoxin--NADP reductase; EC=1.18.1.2; (362 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014038001	RecName- Full=Phosphoribulokinase; EC=2.7.1.19; (404 aa)				•			•		0.501
	GSVIVG00024596001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (668 aa)			•				•		0.466
	GSVIVG00015518001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (99 aa)				•			•		0.463

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
PLN03115	367	PLN03115, PLN03115, ferredoxin--NADP(+) reductase;	0.0
cd06208	286	cd06208, CYPOR_like_FNR, These ferredoxin reductas	1e-175
PLN03116	307	PLN03116, PLN03116, ferredoxin--NADP+ reductase; P	1e-132
cd06182	267	cd06182, CYPOR_like, NADPH cytochrome p450 reducta	1e-100
COG0369	587	COG0369, CysJ, Sulfite reductase, alpha subunit (f	2e-61
TIGR03224	411	TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reduc	9e-60
cd00322	223	cd00322, FNR_like, Ferredoxin reductase (FNR), an	4e-43
cd06199	360	cd06199, SiR, Cytochrome p450- like alpha subunits	2e-36
cd06207	382	cd06207, CyPoR_like, NADPH cytochrome p450 reducta	3e-36
PRK06214	530	PRK06214, PRK06214, sulfite reductase; Provisional	6e-33
cd06204	416	cd06204, CYPOR, NADPH cytochrome p450 reductase (C	6e-31
pfam00175	106	pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi	5e-29
TIGR01931	597	TIGR01931, cysJ, sulfite reductase [NADPH] flavopr	9e-29
cd06203	398	cd06203, methionine_synthase_red, Human methionine	5e-26
cd06206	384	cd06206, bifunctional_CYPOR, These bifunctional pr	4e-25
cd06195	241	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase i	3e-21
PRK10953	600	PRK10953, cysJ, sulfite reductase subunit alpha; P	1e-19
cd06183	234	cd06183, cyt_b5_reduct_like, Cytochrome b5 reducta	1e-19
cd06202	406	cd06202, Nitric_oxide_synthase, The ferredoxin-red	2e-19
cd06201	289	cd06201, SiR_like2, Cytochrome p450- like alpha su	2e-17
COG1018	266	COG1018, Hmp, Flavodoxin reductases (ferredoxin-NA	9e-17
cd06200	245	cd06200, SiR_like1, Cytochrome p450- like alpha su	3e-16
cd06188	283	cd06188, NADH_quinone_reductase, Na+-translocating	1e-15
cd06211	238	cd06211, phenol_2-monooxygenase_like, Phenol 2-mon	3e-15
cd06221	253	cd06221, sulfite_reductase_like, Anaerobic sulfite	1e-13
cd06191	231	cd06191, FNR_iron_sulfur_binding, Iron-sulfur bind	4e-12
COG2871	410	COG2871, NqrF, Na+-transporting NADH:ubiquinone ox	1e-11
cd06216	243	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi	1e-11
cd06214	241	cd06214, PA_degradation_oxidoreductase_like, NAD(P	1e-11
cd06217	235	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur bi	1e-11
cd06187	224	cd06187, O2ase_reductase_like, The oxygenase reduc	4e-11
cd06189	224	cd06189, flavin_oxioreductase, NAD(P)H dependent f	6e-11
cd06194	222	cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulf	6e-11
cd06209	228	cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reduc	2e-10
COG0543	252	COG0543, UbiB, 2-polyprenylphenol hydroxylase and	3e-10
TIGR01941	405	TIGR01941, nqrF, NADH:ubiquinone oxidoreductase, N	4e-10
cd06215	231	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur bi	2e-09
cd06198	216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	9e-09
cd06190	232	cd06190, T4MO_e_transfer_like, Toluene-4-monoxygen	2e-08
cd06213	227	cd06213, oxygenase_e_transfer_subunit, The oxygena	3e-08
cd06210	236	cd06210, MMO_FAD_NAD_binding, Methane monooxygenas	8e-08
cd06184	247	cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)	3e-07
cd06218	246	cd06218, DHOD_e_trans, FAD/NAD binding domain in t	4e-07
PRK08345	289	PRK08345, PRK08345, cytochrome-c3 hydrogenase subu	1e-06
cd06212	232	cd06212, monooxygenase_like, The oxygenase reducta	1e-06
PRK05464	409	PRK05464, PRK05464, Na(+)-translocating NADH-quino	1e-06
cd06196	218	cd06196, FNR_like_1, Ferredoxin reductase-like pro	2e-06
PRK08221	263	PRK08221, PRK08221, anaerobic sulfite reductase su	5e-05
TIGR02911	261	TIGR02911, sulfite_red_B, sulfite reductase, subun	6e-04
cd06192	243	cd06192, DHOD_e_trans_like, FAD/NAD binding domain	0.003

>gnl|CDD|215585 PLN03115, PLN03115, ferredoxin--NADP(+) reductase; Provisional

 Score =  699 bits (1805), Expect = 0.0
 Identities = 316/366 (86%), Positives = 337/366 (92%), Gaps = 5/366 (1%)

Query: 1   MAAVSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVS-TGGRVVSVRAQVTT-- 57
            AAV+AAVSLP+SKS+SLP RTS ISP+RI  +K P YY++   +G RVVS+RAQVTT  
Sbjct: 2   AAAVNAAVSLPSSKSSSLPARTSAISPERIRLKKGPLYYRNNVSSGKRVVSIRAQVTTET 61

Query: 58  --EAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEV 115
             EAPAKV K SKK EEGV+VNKF+PK PY GRCLLNTKITGDDAPGETWHMVFSTEGE+
Sbjct: 62  TTEAPAKVVKVSKKNEEGVVVNKFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEGEI 121

Query: 116 PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIV 175
           PY+EGQSIGVI DG+DKN KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN+ GEIV
Sbjct: 122 PYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIV 181

Query: 176 KGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK 235
           KGVCSNFLCDLKPGAEVKITGPVGKEMLMP+DPNAT+IMLATGTGIAPFR FLWKMFFEK
Sbjct: 182 KGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEK 241

Query: 236 HEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQ 295
           H+DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ N KGEKMYIQ
Sbjct: 242 HDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQ 301

Query: 296 TRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQ 355
           TRMAEYA ELWELLKKDNTYVYMCGL+GMEKGIDDIMVSLAA DGIDW +YKKQLKK+EQ
Sbjct: 302 TRMAEYAEELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLAAKDGIDWFEYKKQLKKAEQ 361

Query: 356 WNVEVY 361
           WNVEVY
Sbjct: 362 WNVEVY 367

Length = 367

>gnl|CDD|99804 cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

 Score =  489 bits (1260), Expect = e-175
 Identities = 184/287 (64%), Positives = 224/287 (78%), Gaps = 3/287 (1%)

Query: 77  NKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVD-KNAK 135
           N +KPK P IG+ + NT++TG DAPGE  H+V    G++PY EGQSIG+I  G D KN K
Sbjct: 1   NLYKPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGK 60

Query: 136 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFLCDLKPGAEVKI 194
           PHKLRLYSIASS  GD GD KT+SLCVKRLVYT+ E  E  KGVCSN+LCDLKPG +V+I
Sbjct: 61  PHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQI 120

Query: 195 TGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS 254
           TGPVGK ML+P DPNAT+IM+ATGTGIAPFR FL ++F EKH DYKF GLAWLF GVP S
Sbjct: 121 TGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNS 180

Query: 255 SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNT 314
            SLLY +E EK  ++ P+NFR+D+A SREQKN  G KMY+Q R+AEYA E+W LL KDNT
Sbjct: 181 DSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNT 240

Query: 315 YVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           +VY+CGL+GME G+DD + S+ A  G+ W ++ + LKK  +W+VEVY
Sbjct: 241 HVYICGLKGMEPGVDDALTSV-AEGGLAWEEFWESLKKKGRWHVEVY 286

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 286

>gnl|CDD|215586 PLN03116, PLN03116, ferredoxin--NADP+ reductase; Provisional

 Score =  379 bits (974), Expect = e-132
 Identities = 159/293 (54%), Positives = 200/293 (68%), Gaps = 8/293 (2%)

Query: 76  VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVD--KN 133
           +N +KPK PY    +   +I G  APGET H+V    G VPY EGQS GVI  G +  K 
Sbjct: 16  LNLYKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKP 75

Query: 134 AKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY----TNENGEIVKGVCSNFLCDLKPG 189
             PH +RLYSIAS+  GD  D KT SLCV+R VY    T +     KGVCSNFLCD KPG
Sbjct: 76  GAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPG 135

Query: 190 AEVKITGPVGKEMLMP-RDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLF 248
            +V+ITGP GK ML+P  DPNAT IM+ATGTGIAPFRGFL +MF E    +KF GLAWLF
Sbjct: 136 DKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLF 195

Query: 249 LGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL 308
           LGV  S SLLY +EFE+  +  P+NFR D+A+SREQKN+KG KMY+Q ++ EY++E+++L
Sbjct: 196 LGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEIFKL 255

Query: 309 LKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           L  +  ++Y CGL+GM  GI D +  +A   G  W +    LKK++QW+VEVY
Sbjct: 256 L-DNGAHIYFCGLKGMMPGIQDTLKRVAEERGESWEEKLSGLKKNKQWHVEVY 307

Length = 307

>gnl|CDD|99779 cd06182, CYPOR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

 Score =  296 bits (761), Expect = e-100
 Identities = 101/282 (35%), Positives = 146/282 (51%), Gaps = 23/282 (8%)

Query: 88  RCLLNTKITGDDAPGETWHMVFST--EGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIA 145
              +N K+T  D+P  T H+ F       + Y+ G  +GVI         P + R YSIA
Sbjct: 1   AITVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN------PLQPRYYSIA 54

Query: 146 SSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMP 205
           SS   D      V LCV+ + Y    G I KGVCSNFL  L+ GA+V +         +P
Sbjct: 55  SSPDVD---PGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLGAKVTVFIRPAPSFRLP 111

Query: 206 RDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSS-LLYKEEFE 264
           +DP   +IM+  GTGIAPFRGFL +    +  + K  G AWLF G    +S  LY+EE +
Sbjct: 112 KDPTTPIIMVGPGTGIAPFRGFLQERAALRA-NGKARGPAWLFFGCRNFASDYLYREELQ 170

Query: 265 KMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCG-LRG 323
           +   K     RLD A SREQ      K+Y+Q ++ E+A EL  LL +   ++Y+CG  + 
Sbjct: 171 EAL-KDGALTRLDVAFSREQAE---PKVYVQDKLKEHAEELRRLLNEGA-HIYVCGDAKS 225

Query: 324 MEKGIDDIMVSLAAN----DGIDWLDYKKQLKKSEQWNVEVY 361
           M K ++D +V + A     D  D  +Y K+L+   ++  +V+
Sbjct: 226 MAKDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW 267

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 267

>gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

 Score =  206 bits (526), Expect = 2e-61
 Identities = 86/251 (34%), Positives = 124/251 (49%), Gaps = 22/251 (8%)

Query: 118 KEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKG 177
           ++     + A+ +     P K RLYSIASS          V L V  + Y  E  E   G
Sbjct: 352 RDFPPAKLPAEELIDLLPPLKPRLYSIASSPGVSP---DEVHLTVGVVRYQAEGRE-RYG 407

Query: 178 VCSNFLCDLKP-GAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH 236
           VCS +L DL   G  + +     K   +P DP   +IM+  GTGIAPFR F+ +      
Sbjct: 408 VCSGYLADLLEEGDTIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFRAFVQERAANGA 467

Query: 237 EDYKFNGLAWLFLGVPTSSS-LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQ 295
           E     G  WLF G    +   LY+EE+E+   K     RLD A SR+Q     EK+Y+Q
Sbjct: 468 E-----GKNWLFFGCRHFTEDFLYQEEWEEY-LKDGVLTRLDLAFSRDQ----EEKIYVQ 517

Query: 296 TRMAEYANELWELLKKDNTYVYMCG-LRGMEKGID----DIMVSLAANDGIDWLDYKKQL 350
            R+ E A+ELWE L ++  ++Y+CG  +GM K ++    DI+         +  +Y K+L
Sbjct: 518 DRLREQADELWEWL-EEGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKEL 576

Query: 351 KKSEQWNVEVY 361
           KK  ++  +VY
Sbjct: 577 KKEGRYQRDVY 587

Length = 587

>gnl|CDD|132268 TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein

 Score =  197 bits (503), Expect = 9e-60
 Identities = 104/289 (35%), Positives = 159/289 (55%), Gaps = 14/289 (4%)

Query: 76  VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYK--EGQSIGVIADGVDKN 133
           VN +  K P     + N ++T +DA  +  H+V    G  P+   EGQSIG++  G D +
Sbjct: 134 VNLYGVKAPITATVVGNYRLTDEDASSDIHHIVLDF-GSHPFPVLEGQSIGILPPGTDAS 192

Query: 134 AKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVK 193
            KPH  R+YS+AS   G+      ++L VKR V T+  G  V+GV SN+LCDLK G +V+
Sbjct: 193 GKPHYARMYSVASPRNGERPGYNNLALTVKR-VTTDHQGNAVRGVASNYLCDLKKGDKVQ 251

Query: 194 ITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPT 253
           + GP G   LMP  P ++++M+ TGTG AP R    +    +  D+   G   LF G  T
Sbjct: 252 VIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERR--RRRRDHGEGGKLMLFFGART 309

Query: 254 SSSLLYKEEFEKMKEKAPENF-RLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKD 312
              L Y    +K+    P++F  ++FA SR  +     K Y+Q  + E A ++  LLK  
Sbjct: 310 KEELPYFGPLQKL----PKDFIDINFAFSRTPEQ---PKRYVQDAIRERAADVAALLKDP 362

Query: 313 NTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           NTY+Y+CGL+GME+G+ D    + A +G+ W   + +L+   + ++E Y
Sbjct: 363 NTYIYICGLKGMEEGVLDAFRDVCATNGLSWETLEPRLRAEGRLHLETY 411

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB [Energy metabolism, Other]. Length = 411

>gnl|CDD|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

 Score =  148 bits (376), Expect = 4e-43
 Identities = 69/238 (28%), Positives = 103/238 (43%), Gaps = 28/238 (11%)

Query: 103 ETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV 162
           +             +K GQ + +              R YSIASS      +   + L V
Sbjct: 9   DVRLFRLQLPNGFSFKPGQYVDLHLP----GDGRGLRRAYSIASSP----DEEGELELTV 60

Query: 163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIA 222
           K          +  G  S +L DLKPG EV+++GP G   L P + +  V+++A G GI 
Sbjct: 61  KI---------VPGGPFSAWLHDLKPGDEVEVSGPGGDFFL-PLEESGPVVLIAGGIGIT 110

Query: 223 PFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR 282
           PFR  L  +  +K       G   L  G  T + LL+ +E E++ ++ P NFRL  A+SR
Sbjct: 111 PFRSMLRHLAADKP-----GGEITLLYGARTPADLLFLDELEELAKEGP-NFRLVLALSR 164

Query: 283 EQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG 340
           E + + G       R+   A  L  L       VY+CG   M K + + +VSL   + 
Sbjct: 165 ESEAKLGP----GGRIDREAEILALLPDDSGALVYICGPPAMAKAVREALVSLGVPEE 218

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 223

>gnl|CDD|99796 cd06199, SiR, Cytochrome p450- like alpha subunits of E

 Score =  135 bits (341), Expect = 2e-36
 Identities = 83/229 (36%), Positives = 115/229 (50%), Gaps = 22/229 (9%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPV 198
           RLYSIASS      D   V L V  + Y +  G   KGV S FL D LK G  V +    
Sbjct: 147 RLYSIASSPKAV-PDE--VHLTVAVVRYESH-GRERKGVASTFLADRLKEGDTVPVFVQP 202

Query: 199 GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS-SSL 257
                +P DP+A +IM+  GTGIAPFR FL +            G  WLF G     +  
Sbjct: 203 NPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGA-----KGKNWLFFGERHFATDF 257

Query: 258 LYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVY 317
           LY++E ++   K     RLD A SR+Q     EK+Y+Q RM E   ELW  L++   + Y
Sbjct: 258 LYQDELQQW-LKDGVLTRLDTAFSRDQA----EKVYVQDRMREQGAELWAWLEEG-AHFY 311

Query: 318 MCG-LRGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361
           +CG  + M K +D  ++ + A +G     +   Y K+LKK +++  +VY
Sbjct: 312 VCGDAKRMAKDVDAALLDIIATEGGMDEEEAEAYLKELKKEKRYQRDVY 360

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. Length = 360

>gnl|CDD|99803 cd06207, CyPoR_like, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

 Score =  134 bits (340), Expect = 3e-36
 Identities = 64/233 (27%), Positives = 112/233 (48%), Gaps = 26/233 (11%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVG 199
           R YSI+SS L +      V L V  + +   +G    G+CS++L  LK G   ++T  + 
Sbjct: 165 RYYSISSSPLKN---PNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVG--QRVTVFIK 219

Query: 200 K-EMLMPRDPNATVIMLATGTGIAPFRGFL-WKMFFEKHEDYKFNGLAWLFLGVPT-SSS 256
           K    +P+DP   +IM+  GTG+APFR FL  +            G   L+ G       
Sbjct: 220 KSSFKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQG--PEIGPVLLYFGCRHEDKD 277

Query: 257 LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYV 316
            LYKEE E+ ++       L  A SR+Q     +K+Y+Q  + E ++ +++LL++    +
Sbjct: 278 YLYKEELEEYEKSGVLT-TLGTAFSRDQ----PKKVYVQDLIRENSDLVYQLLEEGAGVI 332

Query: 317 YMCG-----LRGMEKGIDDIMVSLAANDGIDWLD---YKKQLKKSEQWNVEVY 361
           Y+CG        +++  ++I   L  + G D        ++L++  ++ VE +
Sbjct: 333 YVCGSTWKMPPDVQEAFEEI---LKKHGGGDEELAEKKIEELEERGRYVVEAW 382

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 382

>gnl|CDD|235745 PRK06214, PRK06214, sulfite reductase; Provisional

 Score =  128 bits (323), Expect = 6e-33
 Identities = 79/233 (33%), Positives = 115/233 (49%), Gaps = 22/233 (9%)

Query: 136 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKI 194
           P + RLYSI+SS     G    VSL V  + Y      +  GV S FL + L PG  V++
Sbjct: 313 PLQPRLYSISSSPKATPG---RVSLTVDAVRYEIG-SRLRLGVASTFLGERLAPGTRVRV 368

Query: 195 TGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS 254
                    +P DPN  +IM+  GTGIAPFR FL     E+    K  G  WLF G   S
Sbjct: 369 YVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLH----ERAA-TKAPGRNWLFFGHQRS 423

Query: 255 SS-LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDN 313
           ++   Y++E   +K       RL  A SR+      EK Y+Q RM E   ELW+ L ++ 
Sbjct: 424 ATDFFYEDELNGLKAAGVLT-RLSLAWSRDG----EEKTYVQDRMRENGAELWKWL-EEG 477

Query: 314 TYVYMCG-LRGMEKGIDDIMVSLAANDGI----DWLDYKKQLKKSEQWNVEVY 361
            + Y+CG  + M K ++  +V + A  G     + + +  +LKK+ ++  +VY
Sbjct: 478 AHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRYQADVY 530

Length = 530

>gnl|CDD|99801 cd06204, CYPOR, NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

 Score =  121 bits (305), Expect = 6e-31
 Identities = 71/249 (28%), Positives = 112/249 (44%), Gaps = 48/249 (19%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVG 199
           R YSI+SS+         + +    + Y    G I+KGV +N+L  LKP A      P  
Sbjct: 179 RYYSISSSSKVH---PNRIHITAVVVKYPTPTGRIIKGVATNWLLALKP-ALNGEKPPTP 234

Query: 200 KEML---------------------MPRDPNATVIMLATGTGIAPFRGFL-----WKMFF 233
             +                      +P  P+  VIM+  GTG+APFRGF+      K   
Sbjct: 235 YYLSGPRKKGGGSKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALK--- 291

Query: 234 EKHEDYKFNGLAWLFLGVPTSSS-LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKM 292
           E  +     G   LF G        +YK+E E+  +       L  A SREQ     +K+
Sbjct: 292 ESGKKV---GPTLLFFGCRHPDEDFIYKDELEEYAKLG-GLLELVTAFSREQ----PKKV 343

Query: 293 YIQTRMAEYANELWELLKKDNTYVYMCG-LRGMEKGIDDIMVS-LAANDGIDW---LDYK 347
           Y+Q R+AE+A ++WEL+ +   Y+Y+CG  + M + ++  ++  LA   G+      +Y 
Sbjct: 344 YVQHRLAEHAEQVWELINEG-AYIYVCGDAKNMARDVEKTLLEILAEQGGMTETEAEEYV 402

Query: 348 KQLKKSEQW 356
           K+LK   ++
Sbjct: 403 KKLKTRGRY 411

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 416

>gnl|CDD|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain

 Score =  108 bits (271), Expect = 5e-29
 Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 11/117 (9%)

Query: 214 MLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPEN 273
           M+A GTGIAP    L  +  ++          +L  G  T   LL +EE E++ +K P  
Sbjct: 1   MIAGGTGIAPLYSVLKALLEDEDG-----TEVYLVYGNRTEDDLLLREELEELAKKYPNL 55

Query: 274 FRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDD 330
                AVSR      G K Y+   + E            +T VY+CG   M K +  
Sbjct: 56  --KVVAVSRTDDGWYGRKGYVTDALLEEHLS----EDLGDTDVYVCGPPPMMKAVRK 106

Xanthine dehydrogenases, that also bind FAD/NAD, have essentially no similarity. Length = 106

>gnl|CDD|233643 TIGR01931, cysJ, sulfite reductase [NADPH] flavoprotein, alpha-component

 Score =  116 bits (293), Expect = 9e-29
 Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 21/190 (11%)

Query: 135 KPHKLRLYSIASS--ALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAE 191
           +P   RLYSI+SS   +GD      V L V  + Y    G    G  S FL + LK G  
Sbjct: 379 RPLTPRLYSISSSQSEVGD-----EVHLTVGVVRYQAH-GRARLGGASGFLAERLKEGDT 432

Query: 192 VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGV 251
           V +         +P DP+  +IM+  GTG+APFR F+     ++  +    G  WLF G 
Sbjct: 433 VPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFM-----QERAEDGAKGKNWLFFGN 487

Query: 252 PT-SSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLK 310
           P  ++  LY+ E++   +K     ++D A SR+Q     EK+Y+Q R+ E   ELW+ L 
Sbjct: 488 PHFTTDFLYQVEWQNYLKKG-VLTKMDLAFSRDQA----EKIYVQHRIREQGAELWQWL- 541

Query: 311 KDNTYVYMCG 320
           ++  ++Y+CG
Sbjct: 542 QEGAHIYVCG 551

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase. Length = 597

>gnl|CDD|99800 cd06203, methionine_synthase_red, Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

 Score =  107 bits (268), Expect = 5e-26
 Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 26/236 (11%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFL---CDLKPGAEVKIT- 195
           R YSIASS L   G    +          +      KG+C+++L   C       VK+  
Sbjct: 175 RPYSIASSPLEGPG---KLRFIF------SVVEFPAKGLCTSWLESLCLSASSHGVKVPF 225

Query: 196 --GPVGKEMLMPRDPNATVIMLATGTGIAPFRGFL--WKMFFEKHEDYKFNGLAWLFLGV 251
                 +  L P D    +IM+  GTG+APF GFL   +   E H +  F G AWLF G 
Sbjct: 226 YLRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVF-GEAWLFFGC 284

Query: 252 PTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLK 310
                  L+++E E+  E+     RL  A SR++ N+     Y+Q ++ E   +L +LL 
Sbjct: 285 RHRDRDYLFRDELEEFLEEGILT-RLIVAFSRDE-NDGSTPKYVQDKLEERGKKLVDLLL 342

Query: 311 KDNTYVYMCG-LRGMEKGIDDIMVSLAAND-GIDWL---DYKKQLKKSEQWNVEVY 361
             N  +Y+CG  +GM K + D  V + + + G+D L       +L+K +++  +V+
Sbjct: 343 NSNAKIYVCGDAKGMAKDVRDTFVDILSKELGLDKLEAKKLLARLRKEDRYLEDVW 398

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 398

>gnl|CDD|99802 cd06206, bifunctional_CYPOR, These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

 Score =  104 bits (261), Expect = 4e-25
 Identities = 71/241 (29%), Positives = 114/241 (47%), Gaps = 29/241 (12%)

Query: 136 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEI-VKGVCSNFLCDLKPGAEVKI 194
           P + R YSI+SS L D       +L V  L     +G+   +GV S++L  L+PG  + +
Sbjct: 158 PMRPRQYSISSSPLVD---PGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHV 214

Query: 195 T-GPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGV-- 251
           +  P       P DP+  +IM+A GTG+APFRGFL +      +  K    A LF G   
Sbjct: 215 SVRPSHSAFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKL-APALLFFGCRH 273

Query: 252 PTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK 311
           P     LY++E E+  E A     +  A SR      G + Y+Q R+     E+WEL ++
Sbjct: 274 PDHDD-LYRDELEEW-EAAGV-VSVRRAYSR--PPGGGCR-YVQDRLWAEREEVWELWEQ 327

Query: 312 DNTYVYMCGLRGMEKGIDDIMVSLAAN-----------DGIDWLDYKKQLKKSEQWNVEV 360
               VY+CG   M  G+ +++  + A            +  +WL+   +L+   ++  +V
Sbjct: 328 G-ARVYVCGDGRMAPGVREVLKRIYAEKDERGGGSDDEEAEEWLE---ELRNKGRYATDV 383

Query: 361 Y 361
           +
Sbjct: 384 F 384

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 384

>gnl|CDD|99792 cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

 Score = 91.1 bits (227), Expect = 3e-21
 Identities = 59/238 (24%), Positives = 89/238 (37%), Gaps = 43/238 (18%)

Query: 106 HMVFSTEGEV--PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK 163
              F    ++   ++ GQ   +   G+  +      R YSIAS+                
Sbjct: 12  LFSFRVTRDIPFRFQAGQFTKL---GLPNDDGKLVRRAYSIASAPY-------------- 54

Query: 164 RLVYTNENGEIV-----KGVCSNFLCDLKPGAEVKIT-GPVGKEMLMPRDPNA-TVIMLA 216
                 EN E        G  +  L  LKPG  + +   P G  + +   P    + +LA
Sbjct: 55  -----EENLEFYIILVPDGPLTPRLFKLKPGDTIYVGKKPTGF-LTLDEVPPGKRLWLLA 108

Query: 217 TGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRL 276
           TGTGIAPF   L  +   +  D K      L  GV  +  L Y++E E + ++    FR 
Sbjct: 109 TGTGIAPFLSMLRDLEIWERFD-KIV----LVHGVRYAEELAYQDEIEALAKQYNGKFRY 163

Query: 277 DFAVSREQKNEKGEKMYIQTRMA--EYANELWELLKKDNTYVYMCGLRGMEKGIDDIM 332
              VSRE++N       I   +   E        L  + ++V +CG   M   IDD  
Sbjct: 164 VPIVSREKEN-GALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQM---IDDTQ 217

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|182862 PRK10953, cysJ, sulfite reductase subunit alpha; Provisional

 Score = 89.8 bits (223), Expect = 1e-19
 Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 20/205 (9%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPV 198
           RLYSIASS   +  +   +++ V R  Y  E G    G  S+FL D L+   EV++    
Sbjct: 387 RLYSIASSQ-AEVENEVHITVGVVR--YDIE-GRARAGGASSFLADRLEEEGEVRVFIEH 442

Query: 199 GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPT-SSSL 257
                +P +P   VIM+  GTGIAPFR F+     ++       G  WLF G P  +   
Sbjct: 443 NDNFRLPANPETPVIMIGPGTGIAPFRAFM-----QQRAADGAPGKNWLFFGNPHFTEDF 497

Query: 258 LYKEEFEK-MKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYV 316
           LY+ E+++ +KE      R+D A SR+QK    EK+Y+Q ++ E   ELW  +  D  ++
Sbjct: 498 LYQVEWQRYVKEGLLT--RIDLAWSRDQK----EKIYVQDKLREQGAELWRWI-NDGAHI 550

Query: 317 YMCG-LRGMEKGIDDIMVSLAANDG 340
           Y+CG    M K ++  ++ + A  G
Sbjct: 551 YVCGDANRMAKDVEQALLEVIAEFG 575

Length = 600

>gnl|CDD|99780 cd06183, cyt_b5_reduct_like, Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

 Score = 86.1 bits (214), Expect = 1e-19
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 16/177 (9%)

Query: 151 DFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNA 210
              D     L +K  +Y    G++     S +L  LKPG  V+I GP GK    P     
Sbjct: 55  PDDDKGYFDLLIK--IY--PGGKM-----SQYLHSLKPGDTVEIRGPFGKFEYKPNGKVK 105

Query: 211 TVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKA 270
            + M+A GTGI P    + +   +  ED        L     T   +L +EE +++ +K 
Sbjct: 106 HIGMIAGGTGITPMLQLI-RAILKDPED---KTKISLLYANRTEEDILLREELDELAKKH 161

Query: 271 PENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG 327
           P+ F++ + +SR  +  KG   +I     E   E       ++T V +CG   M +G
Sbjct: 162 PDRFKVHYVLSRPPEGWKGGVGFIT---KEMIKEHLPPPPSEDTLVLVCGPPPMIEG 215

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH. Length = 234

>gnl|CDD|99799 cd06202, Nitric_oxide_synthase, The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 63/190 (33%), Positives = 91/190 (47%), Gaps = 19/190 (10%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE--IVKGVCSNFLCDLKPGAEVKITGP 197
           R YSI+SS   D      + L V  + Y   +G+  +  GVCS +L  L PG  V     
Sbjct: 178 RYYSISSSP--DM-YPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVR 234

Query: 198 VGKEMLMPRDPNATVIMLATGTGIAPFRGFLWK-----MFFEKHEDYKFNGLAWLFLGVP 252
                 +P DP+  VIM+  GTGIAPFR F W+     +   +    KF G   LF G  
Sbjct: 235 SAPSFHLPEDPSVPVIMVGPGTGIAPFRSF-WQQRQYDLRMSEDPGKKF-GDMTLFFGCR 292

Query: 253 TSSSL-LYKEEFEKMKEKAPENF-RLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLK 310
            S+   +YKEE E+ K K       +  A+SRE       K Y+Q  + E A  +++ L 
Sbjct: 293 NSTIDDIYKEETEEAKNK--GVLTEVYTALSREPGK---PKTYVQDLLKEQAESVYDALV 347

Query: 311 KDNTYVYMCG 320
           ++  ++Y+CG
Sbjct: 348 REGGHIYVCG 357

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation. Length = 406

>gnl|CDD|99798 cd06201, SiR_like2, Cytochrome p450- like alpha subunits of E

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 57/224 (25%), Positives = 97/224 (43%), Gaps = 43/224 (19%)

Query: 116 PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIV 175
            ++ G  +G++  G D    P   R YS+ASS+   F     + +CV++           
Sbjct: 83  SFEAGDLLGILPPGSDV---P---RFYSLASSSSDGF-----LEICVRKHP--------- 122

Query: 176 KGVCSNFLCDLKPGAEVKITGPVGK-EMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFE 234
            G+CS +L  LKPG  +K    +       P    A VI++  GTGIAP  GF+ +    
Sbjct: 123 GGLCSGYLHGLKPGDTIK--AFIRPNPSFRPAKGAAPVILIGAGTGIAPLAGFI-RANAA 179

Query: 235 KHEDYKFNGLAWLFLGVPTSSSLLYKEEF-EKMKEKAPENFRLDFAVSREQKNEKGEKMY 293
           +   + + G      G   +S  LY++E  + + +         F  SR       +  Y
Sbjct: 180 RRPMHLYWG------GRDPASDFLYEDELDQYLADGRLTQLHTAF--SRTP-----DGAY 226

Query: 294 IQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG----IDDIMV 333
           +Q R+   A  L  L+ +D   + +CG R M +G    +++I+ 
Sbjct: 227 VQDRLRADAERLRRLI-EDGAQIMVCGSRAMAQGVAAVLEEILA 269

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 289

>gnl|CDD|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

 Score = 78.9 bits (195), Expect = 9e-17
 Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 37/222 (16%)

Query: 115 VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEI 174
           + ++ GQ I V   G+    +P  LR YS++S+      +     + VKR     E+G  
Sbjct: 33  LDFEPGQYITV---GLPNGGEPL-LRAYSLSSAP----DEDSLYRISVKR-----EDG-- 77

Query: 175 VKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233
             G  SN+L D LK G  ++++ P G + ++   P   +++LA G GI PF   L     
Sbjct: 78  --GGGSNWLHDHLKVGDTLEVSAPAG-DFVLDDLPERKLLLLAGGIGITPFLSML----- 129

Query: 234 EKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMY 293
               D     +  +     T + L +++E  ++  + P    L     R        +  
Sbjct: 130 RTLLDRGPADVVLVH-AARTPADLAFRDE-LELAAELPNALLLGLYTERG-----KLQGR 182

Query: 294 IQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSL 335
           I       A             VY+CG     + +   + +L
Sbjct: 183 IDVSRLLSAAPDGG------REVYLCGPGPFMQAVRLALEAL 218

Length = 266

>gnl|CDD|99797 cd06200, SiR_like1, Cytochrome p450- like alpha subunits of E

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 68/274 (24%), Positives = 108/274 (39%), Gaps = 60/274 (21%)

Query: 87  GRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIAS 146
            R LLN    G       W +  +             G IA+   ++  PH  R YSIAS
Sbjct: 5   ARVLLNPGSQG----APLWRLRLTPPDAGA---QWQAGDIAEIGPRHPLPH--REYSIAS 55

Query: 147 SALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKP-GAEVKITGPVGKEMLMP 205
             L   G    + L V+++   + +G +  G+ S +L    P GA V +           
Sbjct: 56  --LPADGA---LELLVRQV--RHADGGL--GLGSGWLTRHAPIGASVALR-LRENPGFHL 105

Query: 206 RDPNATVIMLATGTGIAPFRGFL-----------WKMFFEKHEDYKFNGLAWLFLGVPTS 254
            D    +I++  GTG+A  R  L           W +F E+   + F             
Sbjct: 106 PDDGRPLILIGNGTGLAGLRSHLRARARAGRHRNWLLFGERQAAHDF------------- 152

Query: 255 SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANEL---WELLKK 311
                +EE E  +  A    RLD A SR+Q     +K Y+Q R+   A+EL         
Sbjct: 153 ---FCREELEAWQA-AGHLARLDLAFSRDQ----AQKRYVQDRLRAAADELRAWVA---- 200

Query: 312 DNTYVYMCG-LRGMEKGIDDIMVSLAANDGIDWL 344
           +   +Y+CG L+GM  G+D ++  +   + ++ L
Sbjct: 201 EGAAIYVCGSLQGMAPGVDAVLDEILGEEAVEAL 234

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 245

>gnl|CDD|99785 cd06188, NADH_quinone_reductase, Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 15/183 (8%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVG 199
           R YS+A+       +   + L V+       N +I  G+ S+++ +LKPG +V  +GP G
Sbjct: 87  RAYSLANYP----AEEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFG 142

Query: 200 KEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLY 259
            E  +       ++ +  G G+AP R  ++ +        K       + G  +   L Y
Sbjct: 143 -EFFIKDTD-REMVFIGGGAGMAPLRSHIFHLLKTLKSKRK----ISFWYGARSLKELFY 196

Query: 260 KEEFEKMKEKAPENFRLDFAVSREQK--NEKGEKMYIQTRMAEYANELWELLKKDNTYVY 317
           +EEFE ++++ P NF+    +S  Q   N  G   +I        N L +    ++   Y
Sbjct: 197 QEEFEALEKEFP-NFKYHPVLSEPQPEDNWDGYTGFIHQ--VLLENYLKKHPAPEDIEFY 253

Query: 318 MCG 320
           +CG
Sbjct: 254 LCG 256

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain. Length = 283

>gnl|CDD|99807 cd06211, phenol_2-monooxygenase_like, Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

 Score = 74.3 bits (183), Expect = 3e-15
 Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 34/214 (15%)

Query: 114 EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE 173
           E+ ++ GQ + + A G +        R +SIASS      D+  + L + RLV       
Sbjct: 33  EIEFQAGQYVNLQAPGYEGT------RAFSIASSP----SDAGEIELHI-RLV------- 74

Query: 174 IVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMF 232
              G+ + ++   LK G E++I+GP G   +   D    +I +A G+G++  R  +  + 
Sbjct: 75  -PGGIATTYVHKQLKEGDELEISGPYGDFFVRDSDQ-RPIIFIAGGSGLSSPRSMILDL- 131

Query: 233 FEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR--EQKNEKGE 290
            E+ +  K      LF G  T + L Y +EFE +++  P NF+   A+SR   + N KG 
Sbjct: 132 LERGDTRK----ITLFFGARTRAELYYLDEFEALEKDHP-NFKYVPALSREPPESNWKGF 186

Query: 291 KMYIQTRMAEYANELWELLKKDNTYVYMCGLRGM 324
             ++     ++               Y+CG   M
Sbjct: 187 TGFVHDAAKKHFKN-----DFRGHKAYLCGPPPM 215

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases. Length = 238

>gnl|CDD|99817 cd06221, sulfite_reductase_like, Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 49/204 (24%), Positives = 80/204 (39%), Gaps = 38/204 (18%)

Query: 143 SIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEM 202
           SI+S           + L ++R+           G  +  L +LKPG  V + GP G   
Sbjct: 47  SISSDP----TRRGPLELTIRRV-----------GRVTEALHELKPGDTVGLRGPFGNGF 91

Query: 203 LMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEE 262
            +       ++++A G G+AP R  +     +  EDY   G   L  G  T   LL+KEE
Sbjct: 92  PVEEMKGKDLLLVAGGLGLAPLRSLINY-ILDNREDY---GKVTLLYGARTPEDLLFKEE 147

Query: 263 FEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR 322
            ++  ++   +  +   V R ++   G    +   + E        L  DNT   +CG  
Sbjct: 148 LKEWAKR--SDVEVILTVDRAEEGWTGNVGLVTDLLPE------LTLDPDNTVAIVCGPP 199

Query: 323 GM---------EKGI--DDIMVSL 335
            M         + G+  + I VSL
Sbjct: 200 IMMRFVAKELLKLGVPEEQIWVSL 223

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. Length = 253

>gnl|CDD|99788 cd06191, FNR_iron_sulfur_binding, Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

 Score = 64.9 bits (158), Expect = 4e-12
 Identities = 39/170 (22%), Positives = 73/170 (42%), Gaps = 30/170 (17%)

Query: 117 YKEGQSI--GVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEI 174
           ++ GQ +   +  DG +        R YS+ SS   D      +S+ VKR+      G +
Sbjct: 28  FRPGQHVTLKLDFDGEELR------RCYSLCSSPAPD-----EISITVKRV----PGGRV 72

Query: 175 VKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233
                SN+L + ++PG  V++ GP G   +    P    +++A G+GI P    + +   
Sbjct: 73  -----SNYLREHIQPGMTVEVMGPQG-HFVYQPQPPGRYLLVAAGSGITPLMAMI-RATL 125

Query: 234 EKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE 283
           +   +  F     L     T + +++ +E  ++ +K     RL    +RE
Sbjct: 126 QTAPESDFT----LIHSARTPADMIFAQELRELADKPQ-RLRLLCIFTRE 170

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one- electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and 2 electron carriers. FNR has a strong preference for NADP(H) vs NAD(H). Length = 231

>gnl|CDD|225426 COG2871, NqrF, Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 7/150 (4%)

Query: 171 NGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWK 230
           N +   G  S+++  LKPG +V I+GP G E    +D +A ++ +  G G+AP R  ++ 
Sbjct: 239 NPDAPPGQMSSYIWSLKPGDKVTISGPFG-EFFA-KDTDAEMVFIGGGAGMAPMRSHIFD 296

Query: 231 MFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGE 290
                H   K +     + G  +   + Y+E+F++++ + P NF    A+S     +  +
Sbjct: 297 QLKRLHSKRKIS----FWYGARSLREMFYQEDFDQLQAENP-NFHWHLALSDPLPEDNWD 351

Query: 291 KMYIQTRMAEYANELWELLKKDNTYVYMCG 320
                     Y N L +    ++   YMCG
Sbjct: 352 GYTGFIHNVLYENYLKDHEAPEDCEYYMCG 381

Length = 410

>gnl|CDD|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 24/165 (14%)

Query: 120 GQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVC 179
           GQ + +   GV+ +   H  R YS++SS   + G   T++L VK             G+ 
Sbjct: 49  GQHVRL---GVEIDGVRHW-RSYSLSSSPTQEDG---TITLTVKA---------QPDGLV 92

Query: 180 SNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED 238
           SN+L + L PG  V+++ P G + ++P      ++++A G+GI P    L  +       
Sbjct: 93  SNWLVNHLAPGDVVELSQPQG-DFVLPDPLPPRLLLIAAGSGITPVMSMLRTL---LARG 148

Query: 239 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE 283
              + +  L+    T   +++ +E   +  + P N RL    +RE
Sbjct: 149 PTAD-VVLLYY-ARTREDVIFADELRALAAQHP-NLRLHLLYTRE 190

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 243

>gnl|CDD|99810 cd06214, PA_degradation_oxidoreductase_like, NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 53/236 (22%), Positives = 93/236 (39%), Gaps = 47/236 (19%)

Query: 117 YKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVK 176
           Y+ GQ + +    V  + +    R YSI SS          + + VKR         +  
Sbjct: 33  YRPGQFLTLR---VPIDGEEV-RRSYSICSSP-----GDDELRITVKR---------VPG 74

Query: 177 GVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMF--- 232
           G  SN+  D LK G  +++  P G+  L P       ++ A G+GI P       +    
Sbjct: 75  GRFSNWANDELKAGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITP-------VLSIL 127

Query: 233 ---FEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKG 289
                +    +      L  G  T +S++++EE   +K + P+   +   +SREQ    G
Sbjct: 128 KTALAREPASRVT----LVYGNRTEASVIFREELADLKARYPDRLTVIHVLSREQ----G 179

Query: 290 EKMYIQTRM-AEYANELWELLKKD--NTYVYMCGLRGMEKGIDDIMVSLAANDGID 342
           +   ++ R+ A   N L + L         ++CG   M   +D +  +L    G+ 
Sbjct: 180 DPDLLRGRLDAAKLNALLKNLLDATEFDEAFLCGPEPM---MDAVEAALLEL-GVP 231

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 241

>gnl|CDD|99813 cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 54/234 (23%), Positives = 93/234 (39%), Gaps = 30/234 (12%)

Query: 104 TWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK 163
           T+ +        P+  GQ + +    +D        R YSIASS          V L VK
Sbjct: 18  TFRLAVPDGVPPPFLAGQHVDLRLTAIDGY---TAQRSYSIASSPTQRGR----VELTVK 70

Query: 164 RLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIA 222
           R+      GE+     S +L D +K G  +++ GP+G     P   +  V++LA G+GI 
Sbjct: 71  RV----PGGEV-----SPYLHDEVKVGDLLEVRGPIGTFTWNPLHGD-PVVLLAGGSGIV 120

Query: 223 PFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR 282
           P    +         D  +     L     T+  +++++E E++  + P N  +  A++R
Sbjct: 121 PLMSMI-----RYRRDLGWPVPFRLLYSARTAEDVIFRDELEQLARRHP-NLHVTEALTR 174

Query: 283 EQKNE-KGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSL 335
               +  G    I   +     EL   L      VY+CG     +    +++ L
Sbjct: 175 AAPADWLGPAGRITADLIA---ELVPPL--AGRRVYVCGPPAFVEAATRLLLEL 223

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 235

>gnl|CDD|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 57/241 (23%), Positives = 86/241 (35%), Gaps = 54/241 (22%)

Query: 112 EGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNEN 171
           +  +P+  GQ + V   G  +       R YS A+                      NE+
Sbjct: 19  DQPLPFWAGQYVNVTVPGRPRTW-----RAYSPANPP--------------------NED 53

Query: 172 GEI---VK----GVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAP 223
           GEI   V+    G  SN L D LK G  V+++GP G    + RD +  V+ +A GTG+AP
Sbjct: 54  GEIEFHVRAVPGGRVSNALHDELKVGDRVRLSGPYG-TFYLRRDHDRPVLCIAGGTGLAP 112

Query: 224 FRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE 283
            R  +     E            LF G  T   L   E    +  + P   R+   VS E
Sbjct: 113 LRAIV-----EDALRRGEPRPVHLFFGARTERDLYDLEGLLALAARHP-WLRVVPVVSHE 166

Query: 284 QKNEKGEKMYIQTRMAEYANEL--WELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGI 341
           +    G +  +   +     +    +        +Y+CG   M   +D   V      G 
Sbjct: 167 EGAWTGRRGLVTDVVGRDGPDWADHD--------IYICGPPAM---VDAT-VDALLARGA 214

Query: 342 D 342
            
Sbjct: 215 P 215

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 224

>gnl|CDD|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

 Score = 61.4 bits (150), Expect = 6e-11
 Identities = 51/227 (22%), Positives = 84/227 (37%), Gaps = 48/227 (21%)

Query: 102 GETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLC 161
            + + +       + +  GQ + ++ D  DK       R +SIAS+              
Sbjct: 11  DDVYRVRLKPPAPLDFLAGQYLDLLLDDGDK-------RPFSIASAP------------- 50

Query: 162 VKRLVYTNENGEI-------VKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVI 213
                  +E+GEI         G  S+++ + LK    V+I GP+G   L   D +  +I
Sbjct: 51  -------HEDGEIELHIRAVPGGSFSDYVFEELKENGLVRIEGPLGDFFLRE-DSDRPLI 102

Query: 214 MLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPEN 273
           ++A GTG AP +  L     E            L+ G  T   L   E  E    +A  N
Sbjct: 103 LIAGGTGFAPIKSIL-----EHLLAQGSKRPIHLYWGARTEEDLYLDELLEAW-AEAHPN 156

Query: 274 FRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCG 320
           F     +S  ++  +G    +   + E   +L       +  VY CG
Sbjct: 157 FTYVPVLSEPEEGWQGRTGLVHEAVLEDFPDL------SDFDVYACG 197

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD. Length = 224

>gnl|CDD|99791 cd06194, FNR_N-term_Iron_sulfur_binding, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 48/234 (20%), Positives = 80/234 (34%), Gaps = 41/234 (17%)

Query: 111 TEGEVPYKEGQSIGVI-ADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN 169
            +  +PY  GQ + +  A G+         R YS  S           +   ++R    N
Sbjct: 18  PDRPLPYLPGQYVNLRRAGGL--------ARSYSPTS----LPDGDNELEFHIRR--KPN 63

Query: 170 ENGEIVKGVCSNFLCDL-KPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFL 228
                  G  S +L +  +PG  +++ GP G+    P      ++++  GTG+AP  G  
Sbjct: 64  -------GAFSGWLGEEARPGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIA 116

Query: 229 WKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEK 288
                + H+     G   L  G      L        +  + P NFR    VS   + + 
Sbjct: 117 RAALRQGHQ-----GEIRLVHGARDPDDLYLHPALLWLAREHP-NFRYIPCVSEGSQGDP 170

Query: 289 GEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGID 342
                   R    A  L  L +  +  VY+CG       + + +   A   G  
Sbjct: 171 R------VRAGRIAAHLPPLTR--DDVVYLCG----APSMVNAVRRRAFLAGAP 212

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 222

>gnl|CDD|99805 cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 22/148 (14%)

Query: 177 GVCSNFLCDL-KPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK 235
           G  S++L D  +PG  + +TGP+G   L  R+    ++MLA GTG+APF   L  +    
Sbjct: 71  GAMSSYLRDRAQPGDRLTLTGPLGSFYL--REVKRPLLMLAGGTGLAPFLSMLDVL---- 124

Query: 236 HEDYKFNGLAW---LFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKM 292
                 +G A    L  GV   + L+  +  E + E+ P  F     V+         K 
Sbjct: 125 ----AEDGSAHPVHLVYGVTRDADLVELDRLEALAERLP-GFSFRTVVADPDSWH-PRKG 178

Query: 293 YIQTRMAEYANELWELLKKDNTYVYMCG 320
           Y+   +        E L   +  VY+CG
Sbjct: 179 YVTDHLEA------EDLNDGDVDVYLCG 200

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group. Length = 228

>gnl|CDD|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 26/153 (16%)

Query: 175 VKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFE 234
             G  + ++  LK G ++++ GP+G   L  +     V+++A GTGIAP           
Sbjct: 74  EVGKVTKYIFGLKEGDKIRVRGPLGNGFLREKIGK-PVLLIAGGTGIAPLYAIA------ 126

Query: 235 KHEDYKFNGLAW---LFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEK 291
             ++ K  G A    L  G  T+  LL  +E E++ EK       D          KG K
Sbjct: 127 --KELKEKGDANKVTLLYGARTAKDLLLLDELEELAEKEVHPVTDD--------GWKGRK 176

Query: 292 MYIQTRMAEYANELWELLKKDNTYVYMCGLRGM 324
            ++ T      + L ELL  +   VY+CG   M
Sbjct: 177 GFVTT------DVLKELLDLEVDDVYICGPPAM 203

Length = 252

>gnl|CDD|130996 TIGR01941, nqrF, NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 11/152 (7%)

Query: 171 NGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWK 230
           N +I  G+ S+++  LKPG +V I+GP G E    +D +A ++ +  G G+AP R  ++ 
Sbjct: 234 NSDIPPGIMSSYIFSLKPGDKVTISGPFG-EFFA-KDTDAEMVFIGGGAGMAPMRSHIFD 291

Query: 231 MFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ--KNEK 288
                    K +     + G  +   + Y+E+F++++ + P NF    A+S  Q   N  
Sbjct: 292 QLKRLKSKRKIS----FWYGARSLREMFYQEDFDQLEAENP-NFVWHVALSDPQPEDNWT 346

Query: 289 GEKMYIQTRMAEYANELWELLKKDNTYVYMCG 320
           G   +I      Y N L +    ++   YMCG
Sbjct: 347 GYTGFIHN--VLYENYLKDHDAPEDCEFYMCG 376

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump [Transport and binding proteins, Cations and iron carrying compounds]. Length = 405

>gnl|CDD|99811 cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 19/109 (17%)

Query: 116 PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIV 175
            YK GQ + +    ++ + +    R Y+++SS         ++S+ VKR+      G + 
Sbjct: 27  AYKPGQFLTL---ELEIDGETV-YRAYTLSSSP----SRPDSLSITVKRV----PGGLV- 73

Query: 176 KGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAP 223
               SN+L D LK G E+  +GP G E  +   P   +++L+ G+GI P
Sbjct: 74  ----SNWLHDNLKVGDELWASGPAG-EFTLIDHPADKLLLLSAGSGITP 117

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH. Length = 231

>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

 Score = 54.6 bits (132), Expect = 9e-09
 Identities = 42/227 (18%), Positives = 71/227 (31%), Gaps = 43/227 (18%)

Query: 101 PGETWHMVFSTEG-EVPYKEGQSIGV-IADGVDKNAKPHKLRLYSIASSALGDFGDSKTV 158
              T  +     G  + ++ GQ   +       +   P     ++I+S+          +
Sbjct: 6   VRPTTTLTLEPRGPALGHRAGQFAFLRFDASGWEEPHP-----FTISSAP----DPDGRL 56

Query: 159 SLCVKRL-VYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLAT 217
              +K L  YT    E            LKPG  V + GP G+      D  A  I +A 
Sbjct: 57  RFTIKALGDYTRRLAE-----------RLKPGTRVTVEGPYGR--FTFDDRRARQIWIAG 103

Query: 218 GTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLD 277
           G GI PF   L     E            LF  V      ++ +E   +   A     + 
Sbjct: 104 GIGITPFLALL-----EALAARGDARPVTLFYCVRDPEDAVFLDELRALAAAAGVVLHV- 157

Query: 278 FAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGM 324
             +          +  ++  + + A+   +        V+ CG  GM
Sbjct: 158 --IDSPSDGRLTLEQLVRALVPDLAD--AD--------VWFCGPPGM 192

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 216

>gnl|CDD|99787 cd06190, T4MO_e_transfer_like, Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 52/234 (22%), Positives = 81/234 (34%), Gaps = 47/234 (20%)

Query: 109 FSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT 168
           F+ +G   +  GQ   +   GV+        R YS+A+ A      S      +KR    
Sbjct: 16  FALDGPADFLPGQYALLALPGVEGA------RAYSMANLA----NASGEWEFIIKR---- 61

Query: 169 NENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPF--- 224
              G       SN L D L+PG E+++ GP G   L P +    ++ +A G+G+AP    
Sbjct: 62  KPGG---AA--SNALFDNLEPGDELELDGPYGLAYLRPDEDR-DIVCIAGGSGLAPMLSI 115

Query: 225 -RGFL-WKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR 282
            RG        ++  D        LF G  T S L   +E   +        R+  AVS 
Sbjct: 116 LRGAARSPYLSDRPVD--------LFYGGRTPSDLCALDELSALVALG-ARLRVTPAVSD 166

Query: 283 EQKNEK----GEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIM 332
                     G   ++   +     +            Y  G   M   +D + 
Sbjct: 167 AGSGSAAGWDGPTGFVHEVVEATLGDRL-----AEFEFYFAGPPPM---VDAVQ 212

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family. Length = 232

>gnl|CDD|99809 cd06213, oxygenase_e_transfer_subunit, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 52/230 (22%), Positives = 83/230 (36%), Gaps = 46/230 (20%)

Query: 115 VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEI 174
           + YK GQ   +   G+         R YS A++  GD      +S  +++         +
Sbjct: 26  IAYKAGQYAELTLPGLPA------ARSYSFANAPQGD----GQLSFHIRK---------V 66

Query: 175 VKGVCSNFL-CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233
             G  S +L    + G  + + GP G   L  R  +A ++ +A G+G+AP    L     
Sbjct: 67  PGGAFSGWLFGADRTGERLTVRGPFGDFWL--RPGDAPILCIAGGSGLAPILAIL----- 119

Query: 234 EKHEDYKFNGL---AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNE--K 288
              E  +  G      L  G  T   L   +E   +  +    FR    +S E  +   K
Sbjct: 120 ---EQARAAGTKRDVTLLFGARTQRDLYALDEIAAIAARWRGRFRFIPVLSEEPADSSWK 176

Query: 289 GEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAAN 338
           G +  +   +AE             T  Y+CG   M   ID  +  L A 
Sbjct: 177 GARGLVTEHIAEVLLA--------ATEAYLCGPPAM---IDAAIAVLRAL 215

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate. Length = 227

>gnl|CDD|99806 cd06210, MMO_FAD_NAD_binding, Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 13/149 (8%)

Query: 177 GVCSNFL-CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK 235
           G  S +L    K G  + + GP+G   L           +A GTG+AP    L +M    
Sbjct: 76  GAFSTYLETRAKVGQRLNLRGPLGAFGLRENGL-RPRWFVAGGTGLAPLLSMLRRM---- 130

Query: 236 HEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQ 295
             ++     A LF GV T + L Y +E +++ +  P N  +   V R     +G +    
Sbjct: 131 -AEWGEPQEARLFFGVNTEAELFYLDELKRLADSLP-NLTVRICVWRPGGEWEGYR---G 185

Query: 296 TRMAEYANELWELLKKDNTYVYMCGLRGM 324
           T +     +L     K +  +Y+CG  GM
Sbjct: 186 TVVDALREDLASSDAKPD--IYLCGPPGM 212

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water. Length = 236

>gnl|CDD|99781 cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of flavohemoglobin

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 47/218 (21%), Positives = 83/218 (38%), Gaps = 42/218 (19%)

Query: 116 PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIV 175
           P+  GQ + V    +        +R YS+ S A    GD   +S  VKR           
Sbjct: 36  PFLPGQYLSVRVK-LPGLGYRQ-IRQYSL-SDAPN--GDYYRIS--VKR---------EP 79

Query: 176 KGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFE 234
            G+ SN+L D +K G  ++++ P G + ++    +  +++++ G GI P    L      
Sbjct: 80  GGLVSNYLHDNVKVGDVLEVSAPAG-DFVLDEASDRPLVLISAGVGITPMLSML------ 132

Query: 235 KHEDYKFNGLA--------WLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKN 286
                    LA                S+   +++E E++  + P N +L    S  +  
Sbjct: 133 -------EALAAEGPGRPVTFIHAARNSAVHAFRDELEELAARLP-NLKLHVFYSEPEAG 184

Query: 287 EKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGM 324
           ++ E      R+      L ELL   +   Y+CG    
Sbjct: 185 DREEDYDHAGRID--LALLRELLLPADADFYLCGPVPF 220

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling. Length = 247

>gnl|CDD|99814 cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

 Score = 50.2 bits (121), Expect = 4e-07
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 23/149 (15%)

Query: 183 LCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN 242
           L +LK G E+ + GP+G    +P D +  V+++  G GIAP   FL K   E+       
Sbjct: 73  LSELKAGDELDVLGPLGNGFDLP-DDDGKVLLVGGGIGIAPLL-FLAKQLAERGIK---- 126

Query: 243 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYA 302
               + LG  ++  L   EEFE +          +  V+ +  +  G K ++   + E  
Sbjct: 127 --VTVLLGFRSADDLFLVEEFEALGA--------EVYVATDDGSA-GTKGFVTDLLKE-- 173

Query: 303 NELWELLKKDNTYVYMCGLRGMEKGIDDI 331
                L +     VY CG   M K + ++
Sbjct: 174 ----LLAEARPDVVYACGPEPMLKAVAEL 198

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster. Length = 246

>gnl|CDD|236247 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma; Provisional

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 21/172 (12%)

Query: 160 LCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGT 219
           LC++R            G  +  +  LK G  V + GP G    +       ++++A G 
Sbjct: 70  LCIRRA-----------GRVTTVIHRLKEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGL 118

Query: 220 GIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFA 279
           G+AP R  L    +     +K+ G   L  G      LL+ +E  K   +A EN ++  +
Sbjct: 119 GMAPLRSVLL---YAMDNRWKY-GNITLIYGAKYYEDLLFYDELIKDLAEA-ENVKIIQS 173

Query: 280 VSREQKN---EKGEKMYIQTRMAEYANELW--ELLKKDNTYVYMCGLRGMEK 326
           V+R+ +        + +I+        +L+        NTY  +CG   M K
Sbjct: 174 VTRDPEWPGCHGLPQGFIERVCKGVVTDLFREANTDPKNTYAAICGPPVMYK 225

Length = 289

>gnl|CDD|99808 cd06212, monooxygenase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 48/210 (22%), Positives = 78/210 (37%), Gaps = 35/210 (16%)

Query: 114 EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE 173
            + +  GQ + +   G ++       R +S+A++      D   +   +K   Y      
Sbjct: 27  PIKFFAGQYVDITVPGTEE------TRSFSMANTP----ADPGRLEFIIK--KYPG---- 70

Query: 174 IVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMF 232
              G+ S+FL D L  G  V +TGP G   L        ++++  G+G+AP    L    
Sbjct: 71  ---GLFSSFLDDGLAVGDPVTVTGPYGTCTLRESRDRP-IVLIGGGSGMAPLLSLL---- 122

Query: 233 FEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNE--KGE 290
                    +     F G  T+  L Y EE   + EK P +F    A+S    +E   GE
Sbjct: 123 -RDMAASGSDRPVRFFYGARTARDLFYLEEIAALGEKIP-DFTFIPALSESPDDEGWSGE 180

Query: 291 KMYIQTRMAEYANELWELLKKDNTYVYMCG 320
              +   +      L          VY+CG
Sbjct: 181 TGLVTEVVQRNEATL------AGCDVYLCG 204

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate. Length = 232

>gnl|CDD|235481 PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 177 GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH 236
           G+ S+++  LKPG +V I+GP G+     +D +A ++ +  G G+AP R  ++       
Sbjct: 244 GIMSSYIFSLKPGDKVTISGPFGE--FFAKDTDAEMVFIGGGAGMAPMRSHIFDQLKRLK 301

Query: 237 EDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ 284
              K +     + G  +   + Y E+F+++      NF+   A+S   
Sbjct: 302 SKRKIS----FWYGARSLREMFYVEDFDQL-AAENPNFKWHVALSDPL 344

Length = 409

>gnl|CDD|99793 cd06196, FNR_like_1, Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 36/157 (22%), Positives = 55/157 (35%), Gaps = 22/157 (14%)

Query: 183 LCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN 242
           L  L+PG  + I  P G            V  +A G GI PF   L  +        + N
Sbjct: 78  LGRLQPGDTLLIEDPWGA----IEYKGPGVF-IAGGAGITPFIAILRDL--AAKGKLEGN 130

Query: 243 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYA 302
            L        T   ++ K+E EKM        +    V+ E K+       I        
Sbjct: 131 TL---IFANKTEKDIILKDELEKML-----GLKFINVVTDE-KDPGYAHGRIDKAF---- 177

Query: 303 NELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAAND 339
             L + +   N + Y+CG   ME+ I+  +  L   +
Sbjct: 178 --LKQHVTDFNQHFYVCGPPPMEEAINGALKELGVPE 212

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 218

>gnl|CDD|181300 PRK08221, PRK08221, anaerobic sulfite reductase subunit B; Provisional

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 6/94 (6%)

Query: 177 GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH 236
           G  ++ + +LK G ++ + GP G    +       +I++A GTG+AP +G + + F+E  
Sbjct: 69  GKVTDEIFNLKEGDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLM-RYFYENP 127

Query: 237 EDYK-FNGLAWLFLGVPTSSSLLYKEEFEKMKEK 269
           ++ K  +    L LG      +L+KE+ ++ +EK
Sbjct: 128 QEIKSLD----LILGFKNPDDILFKEDLKRWREK 157

Length = 263

>gnl|CDD|131957 TIGR02911, sulfite_red_B, sulfite reductase, subunit B

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 6/94 (6%)

Query: 177 GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH 236
           G  ++ +  LK G  + + GP G    +    +  ++++A GTG+AP +G + + F +  
Sbjct: 67  GKVTDEVFTLKEGDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVV-EYFVKNP 125

Query: 237 EDYK-FNGLAWLFLGVPTSSSLLYKEEFEKMKEK 269
           ++ K  N    L LG  T   +L+KE+  + K  
Sbjct: 126 KEIKSLN----LILGFKTPDDILFKEDIAEWKGN 155

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum [Central intermediary metabolism, Sulfur metabolism]. Length = 261

>gnl|CDD|99789 cd06192, DHOD_e_trans_like, FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 12/88 (13%)

Query: 136 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKIT 195
                L  I  S  G   +  T+SL V+           ++G  +  + +LKPG ++ + 
Sbjct: 36  FESPGLERIPLSLAGVDPEEGTISLLVE-----------IRGPKTKLIAELKPGEKLDVM 84

Query: 196 GPVGKEMLMPRDPNATVIMLATGTGIAP 223
           GP+G           TV+++A G G+AP
Sbjct: 85  GPLGNGF-EGPKKGGTVLLVAGGIGLAP 111

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH. Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
PLN03115	367	ferredoxin--NADP(+) reductase; Provisional	100.0
PLN03116	307	ferredoxin--NADP+ reductase; Provisional	100.0
cd06208	286	CYPOR_like_FNR These ferredoxin reductases are rel	100.0
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	100.0
KOG1158	645	consensus NADP/FAD dependent oxidoreductase [Energ	100.0
cd06207	382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	100.0
cd06202	406	Nitric_oxide_synthase The ferredoxin-reductase (FN	100.0
cd06206	384	bifunctional_CYPOR These bifunctional proteins fus	100.0
cd06199	360	SiR Cytochrome p450- like alpha subunits of E. col	100.0
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	100.0
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	100.0
cd06203	398	methionine_synthase_red Human methionine synthase	100.0
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	100.0
COG0369	587	CysJ Sulfite reductase, alpha subunit (flavoprotei	100.0
cd06200	245	SiR_like1 Cytochrome p450- like alpha subunits of	100.0
PRK10953	600	cysJ sulfite reductase subunit alpha; Provisional	100.0
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	100.0
PRK06214	530	sulfite reductase; Provisional	100.0
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	100.0
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	100.0
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	100.0
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	100.0
PRK08051	232	fre FMN reductase; Validated	100.0
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	100.0
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	100.0
KOG1159	574	consensus NADP-dependent flavoprotein reductase [E	100.0
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	100.0
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	100.0
PRK05713	312	hypothetical protein; Provisional	100.0
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	100.0
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	100.0
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	100.0
PRK10926	248	ferredoxin-NADP reductase; Provisional	100.0
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	100.0
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	100.0
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	100.0
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	100.0
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	100.0
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	100.0
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	100.0
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	100.0
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	100.0
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	100.0
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	100.0
PTZ00274	325	cytochrome b5 reductase; Provisional	100.0
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	100.0
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	100.0
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	100.0
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	100.0
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	100.0
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	100.0
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	100.0
PRK08221	263	anaerobic sulfite reductase subunit B; Provisional	100.0
KOG0534	286	consensus NADH-cytochrome b-5 reductase [Coenzyme	100.0
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	100.0
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	100.0
TIGR02911	261	sulfite_red_B sulfite reductase, subunit B. Member	100.0
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	100.0
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	100.0
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	100.0
PLN02252	888	nitrate reductase [NADPH]	100.0
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	100.0
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	100.0
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	100.0
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	100.0
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	100.0
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	99.98
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.98
PRK05802	320	hypothetical protein; Provisional	99.98
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	99.97
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	99.97
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	99.97
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.96
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	99.96
cd06193	235	siderophore_interacting Siderophore interacting pr	99.96
cd06186	210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	99.95
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.94
PLN02292	702	ferric-chelate reductase	99.92
PLN02631	699	ferric-chelate reductase	99.9
PLN02844	722	oxidoreductase/ferric-chelate reductase	99.89
PF00175	109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	99.85
KOG3378	385	consensus Globins and related hemoproteins [Energy	99.84
KOG0039	646	consensus Ferric reductase, NADH/NADPH oxidase and	99.8
PF00970	99	FAD_binding_6: Oxidoreductase FAD-binding domain;	99.71
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.63
PF08030	156	NAD_binding_6: Ferric reductase NAD binding domain	99.5
PF00667	219	FAD_binding_1: FAD binding domain; InterPro: IPR00	99.13
PF08022	105	FAD_binding_8: FAD-binding domain; InterPro: IPR01	99.12
COG2375	265	ViuB Siderophore-interacting protein [Inorganic io	99.11
PF08021	117	FAD_binding_9: Siderophore-interacting FAD-binding	98.54
PF00667	219	FAD_binding_1: FAD binding domain; InterPro: IPR00	95.1
TIGR01931	597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	88.98
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	85.13
PF04954	119	SIP: Siderophore-interacting protein; InterPro: IP	83.28

>PLN03115 ferredoxin--NADP(+) reductase; Provisional

Probab=100.00  E-value=3.2e-59  Score=441.95  Aligned_cols=295  Identities=92%  Similarity=1.482  Sum_probs=260.3

Q ss_pred             ccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceeccccc
Q 043022           67 SKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIAS  146 (361)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias  146 (361)
                      ...++.+++.|.|.|+.++.++|+.+.+++.+...+++++|+|+.+..++|.||||+.|.+++.+.+|.++..|+|||+|
T Consensus        73 ~~~~~~~~~~n~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~~~~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS  152 (367)
T PLN03115         73 SKKNEEGVVVNKFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVIPDGIDKNGKPHKLRLYSIAS  152 (367)
T ss_pred             cchhccCCceEeeccCCCeEEEEEeecccccCCCCCceEEEEEcCCCCCCcCCCCEEEEEcCCcCCCCCcCceeeeecCC
Confidence            34455678999999999999999999999998888899999999888899999999999988766666677789999999


Q ss_pred             CCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHH
Q 043022          147 SALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRG  226 (361)
Q Consensus       147 ~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~  226 (361)
                      .|..+..++++++|+||++.|.+..+....|.+|+||+++++||.|.|.||+|++|++|.++.+++||||||||||||++
T Consensus       153 ~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~Gd~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs  232 (367)
T PLN03115        153 SALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRS  232 (367)
T ss_pred             CCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCcCEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHH
Confidence            98532223579999999987876666667899999999999999999999999988887666789999999999999999


Q ss_pred             HHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHH
Q 043022          227 FLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELW  306 (361)
Q Consensus       227 ~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~  306 (361)
                      |+++++.....+.+..++++||||+|+.+|++|.+||++|+++++++|++++++||++.+|.|.++|||++|.++.++++
T Consensus       233 ~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~dlly~dELe~l~~~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e~l~  312 (367)
T PLN03115        233 FLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAEELW  312 (367)
T ss_pred             HHHHHHhhccccccCCCcEEEEEccCCHHHhhHHHHHHHHHHhCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHHHHH
Confidence            99987644322222246899999999999999999999999988779999999999988899999999999999888888


Q ss_pred             HHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          307 ELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       307 ~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +.+..++.+||+|||++|+++|.++|.++....+.+++++.++|+++|||++|||
T Consensus       313 ~~l~~~~~~vYiCGp~~M~~~V~~~l~~l~~~~g~~~~~~~~~lk~~~r~~~e~y  367 (367)
T PLN03115        313 ELLKKDNTYVYMCGLKGMEKGIDDIMVSLAAKDGIDWFEYKKQLKKAEQWNVEVY  367 (367)
T ss_pred             hhcccCCeEEEEeCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHCCCeEEecC
Confidence            7775457899999999999999999999999999999999999999999999998

>PLN03116 ferredoxin--NADP+ reductase; Provisional

Probab=100.00  E-value=7.2e-49  Score=367.44  Aligned_cols=288  Identities=55%  Similarity=0.963  Sum_probs=235.6

Q ss_pred             ccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCC--CCCCCCCceecccccCCCC
Q 043022           73 GVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVD--KNAKPHKLRLYSIASSALG  150 (361)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~--~~~~~~~~R~ySias~p~~  150 (361)
                      ..+.+.|.+..++.++|++++.++...++.++++|+|+.++.++|.||||+.|.+++.+  .++.+...|+|||+|+|..
T Consensus        13 ~~~~~~~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~~~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~   92 (307)
T PLN03116         13 EPPLNLYKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYG   92 (307)
T ss_pred             CCceeeccCCCCEEEEEEeeEEcccCCCCCceEEEEEecCCCCceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCC
Confidence            34556788889999999999999922222339999999998999999999999976532  2343445899999999953


Q ss_pred             CCCCCcEEEEEEEEeeEecCCC----ceecCccchhhhcCCCCCEEEEEccCCCCcCCCC-CCCCcEEEEecCCchhhHH
Q 043022          151 DFGDSKTVSLCVKRLVYTNENG----EIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPR-DPNATVIMLATGTGIAPFR  225 (361)
Q Consensus       151 ~~~~~~~l~~~V~~~~~~~~~~----~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~-~~~~~iv~Ia~GtGiaP~~  225 (361)
                      +..++..|+|+|++..|..+..    ...+|.+|+||+++++|+.|.|.||+|.+|..+. +..+++||||||||||||+
T Consensus        93 ~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~  172 (307)
T PLN03116         93 DDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPGDKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFR  172 (307)
T ss_pred             cCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCCCEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHH
Confidence            1102248999999875543211    1258999999999999999999999999877653 4457999999999999999


Q ss_pred             HHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHH
Q 043022          226 GFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANEL  305 (361)
Q Consensus       226 ~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~  305 (361)
                      +|+++++.......+..++++||||+|+.+|++|.+||++|+++++++|++++++|++...|.+.++||++.+.+..+++
T Consensus       173 sml~~~l~~~~~~~~~~~~v~L~~g~R~~~d~~~~deL~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~~~~~  252 (307)
T PLN03116        173 GFLRRMFMEDVPAFKFGGLAWLFLGVANSDSLLYDDEFERYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEYSDEI  252 (307)
T ss_pred             HHHHHHHhhccccccCCCcEEEEEecCCcccchHHHHHHHHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHHHHHH
Confidence            99998876432211123689999999999999999999999998876899999999988888888899999988876666


Q ss_pred             HHHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          306 WELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       306 ~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      ...+. .+..+|+|||+.|++++.+.|.++....+.+++++++.|+++|||++|+|
T Consensus       253 ~~~~~-~~~~vYiCGp~~mv~~v~~~L~~~~~~~g~~~~~~~~~l~~~~r~~~~~~  307 (307)
T PLN03116        253 FKLLD-NGAHIYFCGLKGMMPGIQDTLKRVAEERGESWEEKLSGLKKNKQWHVEVY  307 (307)
T ss_pred             Hhhhc-CCcEEEEeCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHcCceEEecC
Confidence            55554 47899999999999999999999999888999999999999999999999

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

Probab=100.00  E-value=3.3e-48  Score=359.93  Aligned_cols=283  Identities=64%  Similarity=1.138  Sum_probs=235.4

Q ss_pred             cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCC-CCCCCCceecccccCCCCCCCCCc
Q 043022           78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDK-NAKPHKLRLYSIASSALGDFGDSK  156 (361)
Q Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~-~~~~~~~R~ySias~p~~~~~~~~  156 (361)
                      .|.+++++.++|++++.++++.++.++++++|+.+..++|.|||||.|.+++.+. ++.+...|+|||+|.|..+..+.+
T Consensus         2 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~   81 (286)
T cd06208           2 LYKPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGGKLPYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGK   81 (286)
T ss_pred             CCCCCCCeEEEEEeceeccCCCCCcceEEEEEeCCCcccccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCC
Confidence            4678889999999999999766666699999999878899999999998765432 333446899999999853111347


Q ss_pred             EEEEEEEEeeEecC-CCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhc
Q 043022          157 TVSLCVKRLVYTNE-NGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK  235 (361)
Q Consensus       157 ~l~~~V~~~~~~~~-~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~  235 (361)
                      .++|+||++++.++ .++.+.|.+|.||+++++|+.|.|.||+|++|..+.+..+++||||||||||||++|+++++...
T Consensus        82 ~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~  161 (286)
T cd06208          82 TLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPGDDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREK  161 (286)
T ss_pred             EEEEEEEEEEEecCCCCceeccchHHHHhhCCCCCEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhh
Confidence            99999999875332 22455699999999999999999999999988776555579999999999999999999887652


Q ss_pred             ccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeE
Q 043022          236 HEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTY  315 (361)
Q Consensus       236 ~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~  315 (361)
                      ....+..++++|+||+|+.+|++|.++|++|.+++++++++++++|++++.|.+.++||++.+.+..+++++.+..++..
T Consensus       162 ~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~~~~l~~~l~~~~~~  241 (286)
T cd06208         162 HADYKFTGLAWLFFGVPNSDSLLYDDELEKYPKQYPDNFRIDYAFSREQKNADGGKMYVQDRIAEYAEEIWNLLDKDNTH  241 (286)
T ss_pred             hcccCCCCCEEEEEEecCccchhHHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCceehhhHHHHhHHHHHHHHhcCCcE
Confidence            11111236899999999999999999999999988768999999999888888889999999988777766656534568


Q ss_pred             EEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          316 VYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       316 vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      ||+|||++|++++.+.|.++.. .+..++++++.|+++|||+.|+|
T Consensus       242 vYiCGp~~m~~~v~~~L~~~~~-~~~~~~~~~~~~~~~gr~~~~~~  286 (286)
T cd06208         242 VYICGLKGMEPGVDDALTSVAE-GGLAWEEFWESLKKKGRWHVEVY  286 (286)
T ss_pred             EEEeCCchHHHHHHHHHHHHHh-ccHHHHHHHHHHHHcCCeEEecC
Confidence            9999999999999999999887 45678999999999999999999

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=100.00  E-value=1.2e-46  Score=364.11  Aligned_cols=280  Identities=35%  Similarity=0.642  Sum_probs=232.6

Q ss_pred             ccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCC
Q 043022           73 GVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGD  151 (361)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~  151 (361)
                      ..+.|.|.++.++.++|++++++++.....++++|+|+.+. .++|.||||+.|.+++.+.++.++..|+|||+|.|..+
T Consensus       131 ~~~~~~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~  210 (411)
T TIGR03224       131 HPYVNLYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGE  210 (411)
T ss_pred             CCccccccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcCcCCCcCcceeeeecCCCCcc
Confidence            45667899999999999999999886555669999999876 68899999999998866555556678999999987421


Q ss_pred             CCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHH
Q 043022          152 FGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKM  231 (361)
Q Consensus       152 ~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~  231 (361)
                      ....+.|+|+||++++ ...+...+|.+|+||+++++||+|.+.||+|++|.++....+++||||||||||||++|++++
T Consensus       211 ~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~Gd~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~  289 (411)
T TIGR03224       211 RPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKGDKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERR  289 (411)
T ss_pred             CCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCcCEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHH
Confidence            1122589999999852 223445579999999999999999999999998888755568999999999999999999988


Q ss_pred             HhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhcc
Q 043022          232 FFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK  311 (361)
Q Consensus       232 ~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~  311 (361)
                      .......  ..++++||||+|+.+|++|.+||++|.+.+   +++++++|+++..   .++||++.+.+..+++.+.+..
T Consensus       290 ~~~~~~~--~~~~v~L~~G~Rt~~dl~y~~eL~~l~~~~---~~~~~~~sr~~~~---~~g~V~d~l~~~~~~v~~ll~~  361 (411)
T TIGR03224       290 RRRRDHG--EGGKLMLFFGARTKEELPYFGPLQKLPKDF---IDINFAFSRTPEQ---PKRYVQDAIRERAADVAALLKD  361 (411)
T ss_pred             HHHhhcC--CCCCEEEEEecCccccchHHHHHHHHHhcC---ceEEEEeccCCcc---CcccHhhHHHHhHHHHHHHHhc
Confidence            6532111  137899999999999999999999998764   4566688886432   6789999998877777666653


Q ss_pred             CCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          312 DNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       312 ~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      ++..||+|||+.|++++.+.|.+++.+.+..++++.++|+++||||.|+|
T Consensus       362 ~~~~vYiCGp~~M~~~v~~~L~~~~~~~~~~~~~~~~~l~~~~r~~~e~~  411 (411)
T TIGR03224       362 PNTYIYICGLKGMEEGVLDAFRDVCATNGLSWETLEPRLRAEGRLHLETY  411 (411)
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHCCCeEEecC
Confidence            46889999999999999999999999999999999999999999999999

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]

Probab=100.00  E-value=1.2e-47  Score=378.90  Aligned_cols=309  Identities=36%  Similarity=0.571  Sum_probs=246.4

Q ss_pred             CCcccceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhh--hcccccccccccccccCCCCeeEEEEeE
Q 043022           17 SLPTRTSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVE--KESKKMEEGVIVNKFKPKTPYIGRCLLN   92 (361)
Q Consensus        17 ~~~~~~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~   92 (361)
                      ..+...+-|+|.|||+|++|+||+||++  +++++.+++++|+++++++.  .+..++...    .|..  +.......+
T Consensus       323 ~~~~~~~~p~~~~~t~~~~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~----~y~~--~~~~~~~tl  396 (645)
T KOG1158|consen  323 PTPAKKPHPFPLPTTLRTALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAE----EYPR--WVRQSCLTL  396 (645)
T ss_pred             CCccccCCCCCCCCcHHHHHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchh----hHhH--HHhcccccH
Confidence            4556677899999999999999999999  99999999999999998883  344442211    1222  111110111


Q ss_pred             eeecCCCCCCceEEEEeeCCCcccc--CCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC
Q 043022           93 TKITGDDAPGETWHMVFSTEGEVPY--KEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE  170 (361)
Q Consensus        93 ~~~~~~~~~~~~~~l~l~~~~~l~~--~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~  170 (361)
                      -.+..                .++.  .|+.|+-=.+|       ++++|+|||+|+|..   +++.+++++..+.|..+
T Consensus       397 ~dVl~----------------~fps~kpP~~~ll~~lp-------~L~pR~YSIssS~~~---~~~~vhl~~~vv~~~~~  450 (645)
T KOG1158|consen  397 LDVLE----------------AFPSCKPPLPHLLELLP-------RLQPRYYSISSSPKV---HPNEVHLTVTVVEYGTP  450 (645)
T ss_pred             HHHHh----------------hCCCCCCCHHHHHHhCc-------cccccccccccCccc---CCCEEEEEEEEeeeccC
Confidence            11111                1121  33333222233       568999999999987   88999999999999886


Q ss_pred             CC-ceecCccchhhhcCCCCCEEEEEccCCCC-cCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEE
Q 043022          171 NG-EIVKGVCSNFLCDLKPGAEVKITGPVGKE-MLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLF  248 (361)
Q Consensus       171 ~~-~~~~G~~S~~L~~l~~G~~v~i~gP~G~~-~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~  248 (361)
                      ++ ..+.|.||+||+++++|+.+..-+|.+.+ |.+|.++..|+||||.|||||||++|++++.....++......+|||
T Consensus       451 dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s~frlp~dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf  530 (645)
T KOG1158|consen  451 DGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKSMFRLPSDPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLF  530 (645)
T ss_pred             CCCCccceehhhhHHhcCCccccCcceeecccceecCCCCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEE
Confidence            64 77889999999999999998854555543 77887889999999999999999999998877654443323339999


Q ss_pred             EeccCCc-ccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc-hHH
Q 043022          249 LGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG-MEK  326 (361)
Q Consensus       249 ~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~-m~~  326 (361)
                      ||||+.+ |++|++||+++.+... ++++.+++||++.   +.+.|||++++++.+++++.+..++++|||||+.. |++
T Consensus       531 ~GcR~~~~d~LY~eE~~~~~~~~~-l~~l~~A~SReq~---~~k~YVQd~l~e~~d~v~~~L~~~~g~iYvCGd~~~Ma~  606 (645)
T KOG1158|consen  531 FGCRNSDEDYLYREEWEEYKKAGI-LTRLDVAFSREQT---PKKIYVQDRLREYADEVWELLKKEGGHIYVCGDAKGMAK  606 (645)
T ss_pred             EeCCCchHHHHHHHHHHHHHhcCc-chhheeeeeccCC---CCceehhhHHHHHHHHHHHHHhcCCcEEEEecCCccchH
Confidence            9999998 7799999999966654 8999999999974   48999999999999999999976799999999997 999


Q ss_pred             HHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          327 GIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       327 ~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +|.++|.++..+.+    .+++.++++|++++||++|||
T Consensus       607 dV~~~L~~i~~~~g~~~~~ea~~~lk~lk~~~Ry~~DVw  645 (645)
T KOG1158|consen  607 DVQDALVRILAKDGGLSEEEAEKYLKQLKKSKRYIEDVW  645 (645)
T ss_pred             HHHHHHHHHHHhhCCccHHHHHHHHHHhhhccccccccC
Confidence            99999999999988    899999999999999999999

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=100.00  E-value=5.2e-47  Score=365.19  Aligned_cols=303  Identities=25%  Similarity=0.390  Sum_probs=232.8

Q ss_pred             cceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCC
Q 043022           21 RTSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGD   98 (361)
Q Consensus        21 ~~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   98 (361)
                      ..+.|+|.|+|++++|++|+||++  +++++..|+.++.+...+.......+.++.  ..|...     .-.++..+..+
T Consensus        72 ~~~~~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~--~~~~~~-----~~~~~~d~L~~  144 (382)
T cd06207          72 RGKPPFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGR--TEYKRY-----EKYTYLEVLKD  144 (382)
T ss_pred             ccCCCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhH--HHHHhc-----cCCCHHHHHHh
Confidence            456789999999999999999999  999999999999988876532211111110  011111     11111111111


Q ss_pred             CCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCc
Q 043022           99 DAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGV  178 (361)
Q Consensus        99 ~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~  178 (361)
                                |..   .+...+..+.+. +       ++++|+|||+|+|..   +++.++|+|+++.|.++.++.+.|.
T Consensus       145 ----------f~~---~~~~~~~ll~~l-p-------~l~~R~YSIaSsp~~---~~~~i~l~V~~v~~~~~~~~~~~G~  200 (382)
T cd06207         145 ----------FPS---VRPTLEQLLELC-P-------LIKPRYYSISSSPLK---NPNEVHLLVSLVSWKTPSGRSRYGL  200 (382)
T ss_pred             ----------CCc---CCCCHHHHHHhC-c-------CCCCceeeecCCCcC---CCCeEEEEEEEEEeeCCCCCeeccc
Confidence                      000   011111222222 1       558999999999964   4689999999998888777788999


Q ss_pred             cchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCC-ccc
Q 043022          179 CSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS-SSL  257 (361)
Q Consensus       179 ~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~-~d~  257 (361)
                      +|+||+++++|+.|.+.+|.|. |.++.+..+|+||||+|||||||++|++++......+ ...++++||||+|+. .|+
T Consensus       201 ~S~~L~~l~~Gd~v~v~~p~g~-F~lp~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~-~~~~~~~L~~G~R~~~~d~  278 (382)
T cd06207         201 CSSYLAGLKVGQRVTVFIKKSS-FKLPKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQG-PEIGPVLLYFGCRHEDKDY  278 (382)
T ss_pred             HHHHHhhcCCCCEEEEEEECCc-ccCCCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcC-ccCCCEEEEECCCCCCccc
Confidence            9999999999999999999996 5666666789999999999999999999865431111 124789999999999 799


Q ss_pred             ccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc-hHHHHHHHHHHHH
Q 043022          258 LYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG-MEKGIDDIMVSLA  336 (361)
Q Consensus       258 ~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~-m~~~v~~~L~~~g  336 (361)
                      +|.+||++|.+.+. ++++++++||++.    .++|||+.+.+..+.+.+.+..+.+.||+|||+. |+++|++.|.+++
T Consensus       279 ~y~~el~~~~~~~~-~~~~~~a~Srd~~----~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L~~~~  353 (382)
T cd06207         279 LYKEELEEYEKSGV-LTTLGTAFSRDQP----KKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAFEEIL  353 (382)
T ss_pred             cHHHHHHHHHhCCC-CceEEEEecCCCC----CceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHHHHHH
Confidence            99999999998876 8899999999764    5899999998887777777763345999999998 9999999999999


Q ss_pred             HccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          337 ANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       337 ~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      .+.+    ..+++|+++|+++|||++|||
T Consensus       354 ~~~~~~~~~~a~~~~~~l~~~~Ry~~dvw  382 (382)
T cd06207         354 KKHGGGDEELAEKKIEELEERGRYVVEAW  382 (382)
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence            9875    568999999999999999999

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

Probab=100.00  E-value=4.8e-46  Score=360.28  Aligned_cols=303  Identities=25%  Similarity=0.358  Sum_probs=228.9

Q ss_pred             eecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeeecCC
Q 043022           23 SIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGD   98 (361)
Q Consensus        23 ~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   98 (361)
                      +.++|.|+|++++|++|+||++  +++++..|+.++++...+...  +..+.++   ...|.....  .+++++-...+.
T Consensus        86 ~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~---~~~~~~~~~--~~~~dvL~~f~s  160 (406)
T cd06202          86 PHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGKGSSE---YEDWKWYKN--PNILEVLEEFPS  160 (406)
T ss_pred             ccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHH---HHHHHhccC--CCHHHHHHhCCc
Confidence            3566779999999999999999  888999999999998776632  2221111   001111000  011111111111


Q ss_pred             CCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC--CCceec
Q 043022           99 DAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE--NGEIVK  176 (361)
Q Consensus        99 ~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~--~~~~~~  176 (361)
                                      ......+.+.+.+        ++++|+|||+|+|..   +++.++|+|+.+.|.++  .+..+.
T Consensus       161 ----------------~~~~~~~ll~~lp--------~l~pR~YSIsSsp~~---~~~~~~l~v~vv~~~~~~~~~~~~~  213 (406)
T cd06202         161 ----------------LQVPASLLLTQLP--------LLQPRYYSISSSPDM---YPGEIHLTVAVVSYRTRDGQGPVHH  213 (406)
T ss_pred             ----------------CCCCHHHHHHhCc--------ccCCcccccCCCccC---CCCeEEEEEEEEEEECCCCCCCccc
Confidence                            1111122333332        558999999999964   47899999999877653  234578


Q ss_pred             CccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcc---cccccCCeEEEEEeccC
Q 043022          177 GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH---EDYKFNGLAWLFLGVPT  253 (361)
Q Consensus       177 G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~---~~~~~~~~i~L~~g~r~  253 (361)
                      |.+|+||+++++|+.|.+.++.+..|.+|.+..+|+||||+|||||||++|++++.....   ......++++||||+|+
T Consensus       214 G~~S~~L~~l~~Gd~v~v~~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~  293 (406)
T cd06202         214 GVCSTWLNGLTPGDTVPCFVRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRN  293 (406)
T ss_pred             ccHHHHHHhCCCCCEEEEEEeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCC
Confidence            999999999999999999886554577877777899999999999999999987643210   11112479999999999


Q ss_pred             C-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHH
Q 043022          254 S-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIM  332 (361)
Q Consensus       254 ~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L  332 (361)
                      . .|++|.+||++|.+.+. ++++++++||++..   .++|||+.+.+..+++++.+...++.||+|||+.|+++|.++|
T Consensus       294 ~~~d~ly~~El~~~~~~~~-~~~~~~a~SR~~~~---~k~yVq~~l~~~~~~v~~~l~~~~~~iYvCG~~~M~~~V~~~L  369 (406)
T cd06202         294 STIDDIYKEETEEAKNKGV-LTEVYTALSREPGK---PKTYVQDLLKEQAESVYDALVREGGHIYVCGDVTMAEDVSQTI  369 (406)
T ss_pred             CCcccchHHHHHHHHHcCC-CceEEEEEcCCCCC---CCeehhhHHHHhHHHHHHHHHhCCCEEEEeCCCchHHHHHHHH
Confidence            9 69999999999998766 88899999997532   5799999999988888887744689999999999999999999


Q ss_pred             HHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          333 VSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       333 ~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      .++..+.+    ..+++|+++|+++|||++|||
T Consensus       370 ~~i~~~~~~~s~~~A~~~~~~l~~~gRy~~dvw  402 (406)
T cd06202         370 QRILAEHGNMSAEEAEEFILKLRDENRYHEDIF  402 (406)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence            99888865    568999999999999999999

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

Probab=100.00  E-value=5e-46  Score=358.57  Aligned_cols=301  Identities=24%  Similarity=0.376  Sum_probs=232.1

Q ss_pred             cceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCC
Q 043022           21 RTSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGD   98 (361)
Q Consensus        21 ~~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   98 (361)
                      ..++|+|.|+|++++|++|+||++  +++++..++++|+++..+.......+++.. ...+.+.       .++..+..+
T Consensus        70 ~~~~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~~~~~~-~~~~~~~-------~~~~d~l~~  141 (384)
T cd06206          70 ATGLPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLAGEAYA-AEVLAKR-------VSVLDLLER  141 (384)
T ss_pred             CCCCCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhhhhHHH-HHHHhcC-------CCHHHHHHh
Confidence            446789999999999999999999  899999999999998777632111111100 0001110       111111111


Q ss_pred             CCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCC-ceecC
Q 043022           99 DAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENG-EIVKG  177 (361)
Q Consensus        99 ~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~-~~~~G  177 (361)
                                  .+ ......||++.+.+        ++++|+|||+|+|..   +++.++|+|+.+.+.+..+ ..+.|
T Consensus       142 ------------f~-s~~~~~~~~l~~~p--------~l~~R~YSIaSsp~~---~~~~i~l~v~v~~~~~~~~~~~~~G  197 (384)
T cd06206         142 ------------FP-SIALPLATFLAMLP--------PMRPRQYSISSSPLV---DPGHATLTVSVLDAPALSGQGRYRG  197 (384)
T ss_pred             ------------CC-CCCCCHHHHHHhCc--------ccCCcceeeccCccC---CCCeEEEEEEEEEeecCCCCceeee
Confidence                        11 12356699999984        347999999999963   4688999999987765433 56789


Q ss_pred             ccchhhhcCCCCCEEEE--EccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCC-
Q 043022          178 VCSNFLCDLKPGAEVKI--TGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS-  254 (361)
Q Consensus       178 ~~S~~L~~l~~G~~v~i--~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~-  254 (361)
                      .+|+||+++++|+.|.+  .+|.|. |.++.+..+|+||||||||||||++|++++......+ ...++++||||+|+. 
T Consensus       198 ~~S~~L~~l~~Gd~v~v~i~~p~g~-F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~-~~~~~v~L~~G~R~~~  275 (384)
T cd06206         198 VASSYLSSLRPGDSIHVSVRPSHSA-FRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQG-RKLAPALLFFGCRHPD  275 (384)
T ss_pred             ehHHHHhhCCCCCeEEEEEecCCCc-cCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcC-CCcCCEEEEEeCCCCC
Confidence            99999999999999986  578886 5556556789999999999999999999875432111 113689999999999 


Q ss_pred             cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHH
Q 043022          255 SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVS  334 (361)
Q Consensus       255 ~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~  334 (361)
                      .|++|.+||++|++. + ++++++++|+++..   .++|||+.+.+..+++++.+. +++.+|+|||++|+++|.++|.+
T Consensus       276 ~d~ly~~el~~~~~~-~-~~~l~~a~Sr~~~~---~~~yVq~~i~~~~~~~~~~~~-~~~~vyiCGp~~M~~~v~~~L~~  349 (384)
T cd06206         276 HDDLYRDELEEWEAA-G-VVSVRRAYSRPPGG---GCRYVQDRLWAEREEVWELWE-QGARVYVCGDGRMAPGVREVLKR  349 (384)
T ss_pred             cccchHHHHHHHHHC-C-CeEEEEEecccCCC---CCEechhhHHhhHHHHHHHHH-CCcEEEEECCCchHHHHHHHHHH
Confidence            699999999999874 3 89999999987542   479999999888777777665 58899999999999999999999


Q ss_pred             HHHccC--------CCHHHHHHHHHHcCCeeEeeC
Q 043022          335 LAANDG--------IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       335 ~g~~~~--------~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      ++.+.+        ..+++|+++|+++|||++|||
T Consensus       350 i~~~~~~~~~~~~~~~A~~~~~~l~~~gry~~dvw  384 (384)
T cd06206         350 IYAEKDERGGGSDDEEAEEWLEELRNKGRYATDVF  384 (384)
T ss_pred             HHHHhCcccCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence            999864        468899999999999999999

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la

>cd06199 SiR Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=1.3e-45  Score=352.47  Aligned_cols=288  Identities=30%  Similarity=0.468  Sum_probs=225.6

Q ss_pred             ecCCCcccccccceeeeeeeccceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCc
Q 043022           24 IISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGE  103 (361)
Q Consensus        24 ~p~p~~~t~~~~~~~y~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  103 (361)
                      +++|.|+|++++|++|+||++.  .+..++++|.+...+........+      .|...    .++   ..+..+     
T Consensus        65 ~~~~~~~t~~~~l~~~~dl~~~--~~~~l~~~a~~~~~~~~l~~~~~~------~~~~~----~~~---~d~L~~-----  124 (360)
T cd06199          65 TVGGGTLPLREALIKHYEITTL--LLALLESYAADTGALELLALAALE------AVLAF----AEL---RDVLDL-----  124 (360)
T ss_pred             CCCCCcccHHHHHHhhhhhccC--hHHHHHHhcCCcchHHHHhhcCHH------HHHcc----CcH---HHHHHh-----
Confidence            5678999999999999999983  333466666665544422111111      11110    011   111111     


Q ss_pred             eEEEEeeCC-CccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchh
Q 043022          104 TWHMVFSTE-GEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNF  182 (361)
Q Consensus       104 ~~~l~l~~~-~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~  182 (361)
                             .+ ...++.|||++.+.++        .++|+|||+|+|..   +++.++|+|+++.|.+. ++.+.|.+|+|
T Consensus       125 -------f~~~~~~~~~gq~l~l~~~--------~~~R~YSIaSsp~~---~~~~i~l~v~~v~~~~~-~~~~~G~~S~~  185 (360)
T cd06199         125 -------LPIPPARLTAEELLDLLRP--------LQPRLYSIASSPKA---VPDEVHLTVAVVRYESH-GRERKGVASTF  185 (360)
T ss_pred             -------ccccCCCCCHHHHHHhCcC--------CCCcceeeccCccc---CCCeEEEEEEEeeecCC-CCccceehhHH
Confidence                   11 1467899999999863        37999999999964   46899999999877653 35568999999


Q ss_pred             hhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCC-cccccH
Q 043022          183 LCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS-SSLLYK  260 (361)
Q Consensus       183 L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~-~d~~~~  260 (361)
                      |++ +++|+.|.+.+|.|..|.++.+..+|+||||+|||||||++|++++.....     .++++||||+|+. .|++|.
T Consensus       186 L~~~~~~Gd~v~v~~~~~~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~-----~~~~~L~~G~R~~~~D~~y~  260 (360)
T cd06199         186 LADRLKEGDTVPVFVQPNPHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREATGA-----KGKNWLFFGERHFATDFLYQ  260 (360)
T ss_pred             HHhcCCCCCEEEEEEecCCCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhccC-----CCcEEEEEcCCCCccchhHH
Confidence            998 579999999987665677776667899999999999999999998765432     3789999999998 699999


Q ss_pred             HHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHHHHHHHHHHHHHcc
Q 043022          261 EEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEKGIDDIMVSLAAND  339 (361)
Q Consensus       261 ~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~~v~~~L~~~g~~~  339 (361)
                      +||++|.+.+. ++++++++||++.    .++|||+.+.+..+++++++. +++.||+|||+ .|+++|+++|.++..+.
T Consensus       261 ~el~~~~~~~~-~~~~~~a~Sr~~~----~~~yVq~~l~~~~~~~~~~~~-~~~~vYvCG~~~~M~~~V~~~L~~i~~~~  334 (360)
T cd06199         261 DELQQWLKDGV-LTRLDTAFSRDQA----EKVYVQDRMREQGAELWAWLE-EGAHFYVCGDAKRMAKDVDAALLDIIATE  334 (360)
T ss_pred             HHHHHHHHcCC-CeEEEEEEccCCC----CCccHHHHHHHhHHHHHHHHh-CCCEEEEECCCccccHHHHHHHHHHHHHh
Confidence            99999998776 8999999999764    578999999988888877775 57899999999 89999999999998875


Q ss_pred             C----CCHHHHHHHHHHcCCeeEeeC
Q 043022          340 G----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       340 ~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +    ..+++|+++|+++|||++|||
T Consensus       335 ~~~~~~~a~~~~~~l~~~~Ry~~dvw  360 (360)
T cd06199         335 GGMDEEEAEAYLKELKKEKRYQRDVY  360 (360)
T ss_pred             CCCCHHHHHHHHHHHHHcCCeeeecC
Confidence            5    568899999999999999999

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=100.00  E-value=1.6e-45  Score=357.80  Aligned_cols=305  Identities=27%  Similarity=0.443  Sum_probs=230.6

Q ss_pred             ceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhhcccc-cccccccccccCCCCeeEEEEeEeeecCC
Q 043022           22 TSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEKESKK-MEEGVIVNKFKPKTPYIGRCLLNTKITGD   98 (361)
Q Consensus        22 ~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   98 (361)
                      .+.|+|.|+|++++|++|+||++  +++++..++.++++...+....... .+... ...|....  ..++.+   +..+
T Consensus        82 ~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s~~~~~-~~~~~~~~--~~~~~d---vL~~  155 (416)
T cd06204          82 KKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLASEGKDE-YAKWIVEP--HRNLLE---VLQD  155 (416)
T ss_pred             cCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHhcCHHH-HHHHHhhc--CCCHHH---HHHh
Confidence            35689999999999999999999  8999999999999887766321111 11100 01111100  001111   1111


Q ss_pred             CCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCc
Q 043022           99 DAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGV  178 (361)
Q Consensus        99 ~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~  178 (361)
                           ...+     ..........+.+.+        ++++|+|||+|+|..   +++.++|+|+++.|+++.++.+.|.
T Consensus       156 -----f~s~-----~~~~~pl~~ll~~lp--------~~~pR~YSIsSsp~~---~~~~i~ltV~~v~~~~~~~~~~~G~  214 (416)
T cd06204         156 -----FPSA-----KPTPPPFDFLIELLP--------RLQPRYYSISSSSKV---HPNRIHITAVVVKYPTPTGRIIKGV  214 (416)
T ss_pred             -----Cccc-----CCCCCCHHHHHHhCc--------cCCCcceeeccCccC---CCCEEEEEEEEEEeeCCCCCEEeee
Confidence                 0000     000011122222322        558999999999965   6789999999999988877889999


Q ss_pred             cchhhhcCC---------------------CCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022          179 CSNFLCDLK---------------------PGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE  237 (361)
Q Consensus       179 ~S~~L~~l~---------------------~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~  237 (361)
                      +|+||+++.                     +|+.|.+.+|.|. |.++.+..+|+||||+|||||||++|++++......
T Consensus       215 ~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~~g~-F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~  293 (416)
T cd06204         215 ATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVRRSN-FRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKES  293 (416)
T ss_pred             ehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEecCC-CCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhc
Confidence            999999955                     8999999999996 667766678999999999999999999976543211


Q ss_pred             ccccCCeEEEEEeccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEE
Q 043022          238 DYKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYV  316 (361)
Q Consensus       238 ~~~~~~~i~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~v  316 (361)
                      +. ..++++||||+|+. .|++|.+||++|.+.+. ++++++++||++.    .++|||+++.+..+++++.+. +++.|
T Consensus       294 ~~-~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~-~~~l~~a~Sr~~~----~k~yVq~~i~~~~~~~~~~l~-~~~~v  366 (416)
T cd06204         294 GK-KVGPTLLFFGCRHPDEDFIYKDELEEYAKLGG-LLELVTAFSREQP----KKVYVQHRLAEHAEQVWELIN-EGAYI  366 (416)
T ss_pred             cC-ccCCEEEEEcCCCCCcccchHHHHHHHHHcCC-ceEEEEEECcCCC----CCcchHHHHHHhHHHHHHHHH-cCCEE
Confidence            11 13689999999999 69999999999998766 8999999999754    678999999988888877776 57899


Q ss_pred             EEECCcc-hHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          317 YMCGLRG-MEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       317 yvCGp~~-m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      |+|||+. |+++|.++|.++..+.+    ..+++|+++|+++|||++|||
T Consensus       367 YvCGp~~~M~~~V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~gRy~~dvw  416 (416)
T cd06204         367 YVCGDAKNMARDVEKTLLEILAEQGGMTETEAEEYVKKLKTRGRYQEDVW  416 (416)
T ss_pred             EEECCcccchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeeEecC
Confidence            9999997 99999999999988765    458999999999999999999

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=100.00  E-value=6e-43  Score=321.01  Aligned_cols=257  Identities=39%  Similarity=0.653  Sum_probs=214.7

Q ss_pred             EeEeeecCCCCCCceEEEEeeCC--CccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeE
Q 043022           90 LLNTKITGDDAPGETWHMVFSTE--GEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY  167 (361)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~l~~~--~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~  167 (361)
                      ...+++++.+++.++++|+|+.+  ..++|.||||+.|.+++      ...+|+|||+|.|..   +.+.++|+|+..++
T Consensus         3 ~~~~~~~~~~~~~~v~~l~l~~~~~~~~~~~pGQ~v~l~~~~------~~~~R~ySias~p~~---~~~~l~l~Ik~~~~   73 (267)
T cd06182           3 TVNRKLTPPDSPRSTRHLEFDLSGNSVLKYQPGDHLGVIPPN------PLQPRYYSIASSPDV---DPGEVHLCVRVVSY   73 (267)
T ss_pred             cccccccCCCCCCceEEEEEecCCCCcCccCCCCEEEEecCC------CCCCeeEeecCCCCC---CCCEEEEEEEEEEE
Confidence            44567888889999999999998  57889999999999864      225899999999863   35899999999887


Q ss_pred             ecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022          168 TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL  247 (361)
Q Consensus       168 ~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L  247 (361)
                      +...+..+.|.+|.+|+++++|+.|.+.||+|..|.++.+..+++||||||||||||++|+++++...... ...++++|
T Consensus        74 ~~~~~~~~~G~~S~~L~~lk~Gd~v~v~~p~G~~f~l~~~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~-~~~~~v~l  152 (267)
T cd06182          74 EAPAGRIRKGVCSNFLAGLQLGAKVTVFIRPAPSFRLPKDPTTPIIMVGPGTGIAPFRGFLQERAALRANG-KARGPAWL  152 (267)
T ss_pred             ecCCCCeeccchhHHHhhCCCCCEEEEEEecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcc-ccCCCEEE
Confidence            66555666799999999999999999999999556666555689999999999999999999987631000 01368999


Q ss_pred             EEeccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc-hH
Q 043022          248 FLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG-ME  325 (361)
Q Consensus       248 ~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~-m~  325 (361)
                      |||+|+. +|++|.++|++|.+.+. ++++++++|+++..   ..+||++.+.+..+.+.+.+. ++..||+|||+. |+
T Consensus       153 ~~g~r~~~~d~~~~del~~~~~~~~-~~~~~~~~S~~~~~---~~~~v~~~l~~~~~~l~~~l~-~~~~vyvCGp~~~m~  227 (267)
T cd06182         153 FFGCRNFASDYLYREELQEALKDGA-LTRLDVAFSREQAE---PKVYVQDKLKEHAEELRRLLN-EGAHIYVCGDAKSMA  227 (267)
T ss_pred             EEeCCCCcccccHHHHHHHHHhCCC-cceEEEEEccCCCC---CceehHHHHHHhHHHHHHHHh-cCCEEEEECCcccch
Confidence            9999999 89999999999998766 99999999986532   468999988777666666564 456999999999 99


Q ss_pred             HHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          326 KGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       326 ~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +++.+.|.++..+.+    +.+++|+++|++.|||++|+|
T Consensus       228 ~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (267)
T cd06182         228 KDVEDALVKIIAKAGGVDESDAEEYLKELEDEGRYVEDVW  267 (267)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeEEecC
Confidence            999999999966643    779999999999999999999

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

Probab=100.00  E-value=3e-45  Score=354.14  Aligned_cols=304  Identities=25%  Similarity=0.384  Sum_probs=223.4

Q ss_pred             ceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCC
Q 043022           22 TSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDD   99 (361)
Q Consensus        22 ~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   99 (361)
                      -|.++|.|+|++++|++|+||++  +++++..++++|++...+.......+.++..  .|..  .+...-.++..+..+ 
T Consensus        80 ~~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~--~~~~--~~~~~~~~~~dvL~~-  154 (398)
T cd06203          80 VPVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSE--DYTD--FVRKRGLSLLDLLEA-  154 (398)
T ss_pred             cCCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHH--HHHH--HHhhcCCCHHHHHHh-
Confidence            35578899999999999999999  8999999999999887766322111111000  1111  000000011111111 


Q ss_pred             CCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCcc
Q 043022          100 APGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVC  179 (361)
Q Consensus       100 ~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~  179 (361)
                          ...+      .++  ....+.+.+        ++++|+|||+|+|..   +++.++|+|+.+.+++      .|.+
T Consensus       155 ----f~s~------~~p--l~~ll~~lp--------~~~~R~YSIsSsp~~---~~~~i~l~v~~v~~~~------~G~~  205 (398)
T cd06203         155 ----FPSC------RPP--LSLLIEHLP--------RLQPRPYSIASSPLE---GPGKLRFIFSVVEFPA------KGLC  205 (398)
T ss_pred             ----CCCC------CCC--HHHHHHhCc--------cCCCcceeecCCccc---CCCeEEEEEEEEEecC------CChh
Confidence                0000      011  111122221        458999999999963   4689999999987432      4999


Q ss_pred             chhhhcCC-----CCCEEEEEccCCCCcCCCCC-CCCcEEEEecCCchhhHHHHHHHHHhhcc-cccccCCeEEEEEecc
Q 043022          180 SNFLCDLK-----PGAEVKITGPVGKEMLMPRD-PNATVIMLATGTGIAPFRGFLWKMFFEKH-EDYKFNGLAWLFLGVP  252 (361)
Q Consensus       180 S~~L~~l~-----~G~~v~i~gP~G~~~~~~~~-~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~-~~~~~~~~i~L~~g~r  252 (361)
                      |+||++++     +|+.|.+.+|.++.|.+|.+ ..+|+||||+|||||||++|++++..... ......++++||||+|
T Consensus       206 S~~L~~l~~~~~~~G~~v~i~~~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R  285 (398)
T cd06203         206 TSWLESLCLSASSHGVKVPFYLRSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCR  285 (398)
T ss_pred             hHHHHHhhhhhcCCCCEEEEEEecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCC
Confidence            99999977     99999999954445666655 56899999999999999999987664210 0011247899999999


Q ss_pred             CC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHHHHHH
Q 043022          253 TS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEKGIDD  330 (361)
Q Consensus       253 ~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~~v~~  330 (361)
                      +. .|++|.+||++|.+++. ++++++++||++..+ +.++|||+.+.++.+++++.+...++.||+|||+ .|+++|++
T Consensus       286 ~~~~d~~y~~El~~~~~~~~-~~~~~~a~SRd~~~~-g~k~yVqd~l~~~~~~~~~~l~~~~~~iYvCG~~~~M~~~V~~  363 (398)
T cd06203         286 HRDRDYLFRDELEEFLEEGI-LTRLIVAFSRDENDG-STPKYVQDKLEERGKKLVDLLLNSNAKIYVCGDAKGMAKDVRD  363 (398)
T ss_pred             CCCcchhHHHHHHHHHHcCC-CceEEEEECCCCCCC-CCceecchHHHhCHHHHHHHHhcCCcEEEEECCcchhhHHHHH
Confidence            99 69999999999998876 788999999986543 5789999999998888888765468999999985 79999999


Q ss_pred             HHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          331 IMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       331 ~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +|.++..+.+    ..+++|+++|+++|||++|||
T Consensus       364 ~l~~i~~~~~~~~~~~a~~~~~~l~~~gRy~~dvw  398 (398)
T cd06203         364 TFVDILSKELGLDKLEAKKLLARLRKEDRYLEDVW  398 (398)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence            9999888764    568899999999999999999

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=100.00  E-value=2.2e-44  Score=363.30  Aligned_cols=286  Identities=27%  Similarity=0.476  Sum_probs=231.3

Q ss_pred             CCcccccccceeeeeeec-cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceE
Q 043022           27 PDRITFRKVPFYYKDVST-GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETW  105 (361)
Q Consensus        27 p~~~t~~~~~~~y~di~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  105 (361)
                      ..++|++++|++|+||.. .++++..+++++.+...+.. + .+.+. .  ..|...       ..            +.
T Consensus       304 ~~~~tl~~~l~~~~dl~~~~~~~l~~la~~~~~~~l~~~-~-~~~~~-~--~~y~~~-------~~------------~~  359 (597)
T TIGR01931       304 GKTIPLFEALITHFELTQNTKPLLKAYAELTGNKELKAL-I-ADNEK-L--KAYIQN-------TP------------LI  359 (597)
T ss_pred             CCCcCHHHHHHhceeCCCCCHHHHHHHHHhcCCHHHHHH-h-cCHHH-H--HHHHcC-------CC------------HH
Confidence            457899999999999999 88999999999877654432 1 12111 1  112110       01            11


Q ss_pred             EEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhc
Q 043022          106 HMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD  185 (361)
Q Consensus       106 ~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~  185 (361)
                      .+.-..  +..|.||||+.+.++        +++|+|||+|+|..   +++.++|+|+++.|.. .++.+.|.+|+||++
T Consensus       360 dvl~~f--p~~~~~gq~v~ll~~--------~~~R~YSIaSsp~~---~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~  425 (597)
T TIGR01931       360 DLIRDY--PADLDAEQLISLLRP--------LTPRLYSISSSQSE---VGDEVHLTVGVVRYQA-HGRARLGGASGFLAE  425 (597)
T ss_pred             HHHHHC--CCCCCHHHHHHhCcc--------cCCceeeeccCccc---CCCEEEEEEEEEEecC-CCCccccchhHHHHh
Confidence            111111  257899999999974        37999999999964   5689999999987763 456778999999998


Q ss_pred             -CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccC-CcccccHHHH
Q 043022          186 -LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPT-SSSLLYKEEF  263 (361)
Q Consensus       186 -l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~-~~d~~~~~el  263 (361)
                       +++|++|.|.+|.|..|.+|.+..+|+||||+|||||||++|++++...+.     .++++||||+|+ ..|++|.+||
T Consensus       426 ~l~~Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~-----~g~~~LffG~R~~~~D~ly~~El  500 (597)
T TIGR01931       426 RLKEGDTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRAFMQERAEDGA-----KGKNWLFFGNPHFTTDFLYQVEW  500 (597)
T ss_pred             hCCCCCEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHHHHHHHHHccC-----CCCEEEEECCCCCCcchhHHHHH
Confidence             999999999987776678877777899999999999999999998775432     378999999999 5699999999


Q ss_pred             HHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEEC-CcchHHHHHHHHHHHHHccC--
Q 043022          264 EKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCG-LRGMEKGIDDIMVSLAANDG--  340 (361)
Q Consensus       264 ~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCG-p~~m~~~v~~~L~~~g~~~~--  340 (361)
                      ++|.+++. .+++++++||++.    .++|||++|.+..+++++++. ++++||+|| |+.|+++|.++|.++..+.+  
T Consensus       501 ~~~~~~~~-l~~l~~afSRd~~----~k~yVqd~l~e~~~~~~~~l~-~~a~vYvCG~~~~M~~~V~~~L~~i~~~~g~~  574 (597)
T TIGR01931       501 QNYLKKGV-LTKMDLAFSRDQA----EKIYVQHRIREQGAELWQWLQ-EGAHIYVCGDAKKMAKDVHQALLDIIAKEGHL  574 (597)
T ss_pred             HHHHHcCC-CceeEEEEecCCC----CCccHHHHHHHhHHHHHHHHh-CCcEEEEECCCccccHHHHHHHHHHHHHhCCC
Confidence            99998876 7789999999643    689999999998888888876 579999999 77999999999999988865  


Q ss_pred             --CCHHHHHHHHHHcCCeeEeeC
Q 043022          341 --IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       341 --~~~~~~~~~l~~~~r~~~ev~  361 (361)
                        ..+++|+++|+++|||++|||
T Consensus       575 s~~~A~~~l~~l~~~~RY~~DVy  597 (597)
T TIGR01931       575 DAEEAEEYLTDLRVEKRYQRDVY  597 (597)
T ss_pred             CHHHHHHHHHHHHHcCCeeeecC
Confidence              568899999999999999999

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.8e-42  Score=340.51  Aligned_cols=268  Identities=35%  Similarity=0.640  Sum_probs=239.5

Q ss_pred             ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCC------------C--------C----
Q 043022           79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVD------------K--------N----  133 (361)
Q Consensus        79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~------------~--------~----  133 (361)
                      +.+...+.+.+..+.+++...+..+++++.|+.+. .+.|.||+++.|.+.+..            .        .    
T Consensus       216 ~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~~~~~~  295 (587)
T COG0369         216 YSKPAPSVAILLENRKLTGRDSDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVDGETLP  295 (587)
T ss_pred             ccccCcceeEeeccccCCccccCceeEEEEeecccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccCCCcch
Confidence            45677899999999999999889999999999998 788999999999976532            0        0    


Q ss_pred             ------------------------------------------------------------------------CCCCCcee
Q 043022          134 ------------------------------------------------------------------------AKPHKLRL  141 (361)
Q Consensus       134 ------------------------------------------------------------------------~~~~~~R~  141 (361)
                                                                                              ..++.+|.
T Consensus       296 ~~~~l~~~~e~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~d~L~~f~~~~l~~~~li~~l~~lkPR~  375 (587)
T COG0369         296 LVEALKSHFEFTSAPKSLLENLAHFAGQEELRRLLEQLDIADLQDYAKRRTLIDVLRDFPPAKLPAEELIDLLPPLKPRL  375 (587)
T ss_pred             HHHHHHHheecccchHHHHHHHHHhcCCHHHHHHHHhhhhHHHHhhhccccHHHHHhhccccCCCHHHHHHhCccCCCee
Confidence                                                                                    04568999


Q ss_pred             cccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCC-CCEEEEEccCCCCcCCCCCCCCcEEEEecCCc
Q 043022          142 YSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKP-GAEVKITGPVGKEMLMPRDPNATVIMLATGTG  220 (361)
Q Consensus       142 ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~-G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtG  220 (361)
                      |||+|++..   ++++++++|..+.|+.. ++.+.|.||+||+++.+ |+.|.|....++.|.+|.++.+||||||.|||
T Consensus       376 YSIsSs~~~---~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g~~i~v~v~~n~nf~lp~~~~~PiIMIG~GTG  451 (587)
T COG0369         376 YSIASSPGV---SPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEGDTIPVFVQPNKNFRLPEDPETPIIMIGPGTG  451 (587)
T ss_pred             eEeccCCCC---CCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCCCeEEEEeccCCccccCCCCCCceEEEcCCCC
Confidence            999999986   77999999999999887 34889999999999555 99999999989889999888899999999999


Q ss_pred             hhhHHHHHHHHHhhcccccccCCeEEEEEeccCCc-ccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHH
Q 043022          221 IAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA  299 (361)
Q Consensus       221 iaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~  299 (361)
                      ||||++++++....+.     .+++|||||+|+.+ |++|++||+++..++- ++++.+++||++.    ++.||||+|+
T Consensus       452 IAPFRafvq~r~~~~~-----~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~-~~~l~~AfSRdq~----~KiYVQd~lr  521 (587)
T COG0369         452 IAPFRAFVQERAANGA-----EGKNWLFFGCRHFTEDFLYQEEWEEYLKDGV-LTRLDLAFSRDQE----EKIYVQDRLR  521 (587)
T ss_pred             chhHHHHHHHHHhccc-----cCceEEEecCCCCccchhhHHHHHHHHhcCC-ceeEEEEEeecCC----CCccHHHHHH
Confidence            9999999998876653     25899999999965 9999999999988765 8999999999985    8999999999


Q ss_pred             HhHHHHHHHhccCCeEEEEEC-CcchHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          300 EYANELWELLKKDNTYVYMCG-LRGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       300 ~~~~~~~~~l~~~~~~vyvCG-p~~m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      ++.++++++++ +++++|||| ...|.++|.++|.++..+.+    ..+.++++.|++.+||++|||
T Consensus       522 e~~del~~~l~-~ga~~YVCGd~~~Ma~dV~~AL~~il~~~g~~s~eea~~~l~~lk~~~RY~~DVy  587 (587)
T COG0369         522 EQADELWEWLE-EGAHIYVCGDAKGMAKDVEEALLDILAKEGGLSREEAEEYLKELKKEGRYQRDVY  587 (587)
T ss_pred             HhHHHHHHHHH-CCCEEEEeCCCccchHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCceeeecC
Confidence            99999999999 569999999 67999999999999999877    568899999999999999999

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=1.4e-41  Score=308.71  Aligned_cols=236  Identities=23%  Similarity=0.402  Sum_probs=193.1

Q ss_pred             EeeecCCCCCCceEEEEeeCC-CccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC
Q 043022           92 NTKITGDDAPGETWHMVFSTE-GEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE  170 (361)
Q Consensus        92 ~~~~~~~~~~~~~~~l~l~~~-~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~  170 (361)
                      ...++++...+++++|+|+.+ ..++|+||||+.|.+++      ...+|+|||+|.|.     ++.++|+|++++..  
T Consensus         6 ~~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~------~~~~R~YSIas~p~-----~~~l~l~Vk~~~~~--   72 (245)
T cd06200           6 RVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH------PLPHREYSIASLPA-----DGALELLVRQVRHA--   72 (245)
T ss_pred             eeecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC------CCCCcceEeccCCC-----CCEEEEEEEEeccC--
Confidence            334444433346999999998 57789999999999753      23689999999983     57899999997510  


Q ss_pred             CCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEE
Q 043022          171 NGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFL  249 (361)
Q Consensus       171 ~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~  249 (361)
                        ..+.|.+|+||++ +++|++|.|.||.|..|.++. ..+|+||||||||||||++|++++....      .++++|||
T Consensus        73 --~~~~G~~S~~L~~~~~~Gd~v~i~gp~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~~~------~~~~~l~~  143 (245)
T cd06200          73 --DGGLGLGSGWLTRHAPIGASVALRLRENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARARAG------RHRNWLLF  143 (245)
T ss_pred             --CCCCeeechhhhhCCCCCCEEEEEecCCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHhcc------CCCeEEEE
Confidence              0012889999998 699999999998877777764 4589999999999999999999887543      25789999


Q ss_pred             eccCCc-ccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHHH
Q 043022          250 GVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEKG  327 (361)
Q Consensus       250 g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~~  327 (361)
                      |+|+.+ |++|.+||++|.++++ ++++++++|+++.    .++||++.+.+..+++.+.+. .+..+|+|||+ +|+++
T Consensus       144 g~r~~~~d~~~~~el~~~~~~~~-~~~~~~~~s~~~~----~~~~v~~~l~~~~~~~~~~~~-~~~~vy~CGp~~~m~~~  217 (245)
T cd06200         144 GERQAAHDFFCREELEAWQAAGH-LARLDLAFSRDQA----QKRYVQDRLRAAADELRAWVA-EGAAIYVCGSLQGMAPG  217 (245)
T ss_pred             ecCCccccHhHHHHHHHHHHCCC-cceEEEEEccCCC----CCcchHHHHHHhHHHHHHHHH-CCcEEEEECCchhhhHH
Confidence            999985 9999999999998877 8999999998653    578999999887766655554 46899999999 99999


Q ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          328 IDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       328 v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +.+.|.++...      +.++.|+++|||++|+|
T Consensus       218 v~~~l~~~~~~------~~~~~~~~~~r~~~d~~  245 (245)
T cd06200         218 VDAVLDEILGE------EAVEALLAAGRYRRDVY  245 (245)
T ss_pred             HHHHHHHHHHH------HHHHHHHHCCCeEEecC
Confidence            99999998764      35889999999999999

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional

Probab=100.00  E-value=1.1e-41  Score=342.05  Aligned_cols=269  Identities=30%  Similarity=0.548  Sum_probs=232.6

Q ss_pred             cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCC-CccccCCCcEEEEecCCCC-------------CC----------
Q 043022           78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTE-GEVPYKEGQSIGVIADGVD-------------KN----------  133 (361)
Q Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~-~~l~~~pGQ~v~l~~~~~~-------------~~----------  133 (361)
                      .|.+..++.++|+.+.+++...+..++++++|+.. ..+.|+||+++.|.+.+..             .+          
T Consensus       231 ~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~~~~  310 (600)
T PRK10953        231 PYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTL  310 (600)
T ss_pred             CCCCCCCeEEEEEEEeecCCCCCCceEEEEEEecCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCCCCC
Confidence            45567789999999999999888889999999985 4688999999999876521             00          


Q ss_pred             ----------------------------------------------------------------------CCCCCceecc
Q 043022          134 ----------------------------------------------------------------------AKPHKLRLYS  143 (361)
Q Consensus       134 ----------------------------------------------------------------------~~~~~~R~yS  143 (361)
                                                                                            -.++++|+||
T Consensus       311 tl~~~l~~~~dl~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~dvL~~f~~~~~~~q~l~ll~~l~pR~YS  390 (600)
T PRK10953        311 PLAEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAALQHYAATTPIVDMVRFAPAQLDAEQLIGLLRPLTPRLYS  390 (600)
T ss_pred             CHHHHHHHhcccCCCcHHHHHHHHHhCCCHHHHHHhcCHHHHHHHhcCCCHHHHHHhCCCCCCHHHHHHhCCCCCCeeee
Confidence                                                                                  0245789999


Q ss_pred             cccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchh
Q 043022          144 IASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIA  222 (361)
Q Consensus       144 ias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGia  222 (361)
                      |+|+|..   +++.++|+|+.+.|.. .++.+.|.+|.||++ +++|++|.|.+|.|+.|.+|.++.+|+||||+|||||
T Consensus       391 IaSsp~~---~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~~F~lp~~~~~piImIg~GTGIA  466 (600)
T PRK10953        391 IASSQAE---VENEVHITVGVVRYDI-EGRARAGGASSFLADRLEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIA  466 (600)
T ss_pred             cccCCCC---CCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCCCCEEEEEeccCCcccCCCCCCCCEEEEecCcCcH
Confidence            9999964   5789999999888764 466789999999997 9999999999998877888877778999999999999


Q ss_pred             hHHHHHHHHHhhcccccccCCeEEEEEeccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh
Q 043022          223 PFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY  301 (361)
Q Consensus       223 P~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~  301 (361)
                      ||++|++++...+.     .++++||||+|+. .|++|.+||++|.+++. ..++++++||++.    .+.|||++|.++
T Consensus       467 Pfrsflq~r~~~~~-----~~~~~LffG~R~~~~D~lY~~El~~~~~~g~-l~~l~~afSRd~~----~k~YVQ~~l~e~  536 (600)
T PRK10953        467 PFRAFMQQRAADGA-----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGL-LTRIDLAWSRDQK----EKIYVQDKLREQ  536 (600)
T ss_pred             HHHHHHHHHHHcCC-----CCCeEEEeeccCCccchhHHHHHHHHHHcCC-cceEEEEECCCCC----CCCcHHHHHHHH
Confidence            99999998765432     3789999999995 59999999999998875 6779999999864    789999999999


Q ss_pred             HHHHHHHhccCCeEEEEECCc-chHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          302 ANELWELLKKDNTYVYMCGLR-GMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       302 ~~~~~~~l~~~~~~vyvCGp~-~m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      .+++++++. ++++|||||++ .|+++|+++|.++..+++    ..+++|+++|+++|||++|||
T Consensus       537 ~~~l~~~l~-~ga~~YVCG~~~~M~~~V~~~L~~i~~~~g~~~~e~A~~~l~~l~~~~RY~~Dvy  600 (600)
T PRK10953        537 GAELWRWIN-DGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY  600 (600)
T ss_pred             HHHHHHHHH-CCcEEEEECCCccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCeeeecC
Confidence            999999987 68999999997 699999999999988865    568899999999999999999

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=100.00  E-value=5.1e-41  Score=318.87  Aligned_cols=253  Identities=20%  Similarity=0.295  Sum_probs=210.6

Q ss_pred             cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCC---CccccCCCc
Q 043022           45 GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTE---GEVPYKEGQ  121 (361)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~---~~l~~~pGQ  121 (361)
                      ..++..++|+..+.++..++. ....+  .  ....+.+.+.++|++++.++++     ++.|+|+.+   +.+.|+|||
T Consensus        72 ~~~g~~L~C~~~~~~d~~i~~-~~~~~--~--~~~~~~~~~~~~V~~i~~~s~d-----i~~l~l~~~~~~~~~~~~pGQ  141 (340)
T PRK11872         72 LAQRKMLACQTRVKSDAAFYF-DFDSS--L--CNAGDTLKISGVVTAVELVSET-----TAILHLDASAHGRQLDFLPGQ  141 (340)
T ss_pred             HhCCeEEEeeCEECCceEEEe-cCccc--c--ccccccceeeEEEEEEEecCCC-----eEEEEEEcCCCCCccCcCCCC
Confidence            567889999999999987762 11111  1  0113556888999999999999     999999986   467899999


Q ss_pred             EEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCC
Q 043022          122 SIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGK  200 (361)
Q Consensus       122 ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~  200 (361)
                      |+.|.+++..      ..|+|||+|.|.    +.+.++|+||+++         +|.+|+||++ +++|+.|.|+||+|.
T Consensus       142 ~v~l~~~~~~------~~R~ySias~p~----~~~~l~~~ik~~~---------~G~~s~~L~~~l~~G~~v~i~gP~G~  202 (340)
T PRK11872        142 YARLQIPGTD------DWRSYSFANRPN----ATNQLQFLIRLLP---------DGVMSNYLRERCQVGDEILFEAPLGA  202 (340)
T ss_pred             EEEEEeCCCC------ceeecccCCCCC----CCCeEEEEEEECC---------CCcchhhHhhCCCCCCEEEEEcCcce
Confidence            9999987532      479999999986    5689999999987         7999999985 999999999999999


Q ss_pred             CcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEe
Q 043022          201 EMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAV  280 (361)
Q Consensus       201 ~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~  280 (361)
                      +++.  ...+++||||||||||||++|+++++....     .++++||||+|+.+|++|.++|++|+++++ +|+++.++
T Consensus       203 f~l~--~~~~~~vliagGtGiaP~~s~l~~~~~~~~-----~~~v~l~~g~r~~~dl~~~~el~~~~~~~~-~~~~~~~~  274 (340)
T PRK11872        203 FYLR--EVERPLVFVAGGTGLSAFLGMLDELAEQGC-----SPPVHLYYGVRHAADLCELQRLAAYAERLP-NFRYHPVV  274 (340)
T ss_pred             eEeC--CCCCcEEEEeCCcCccHHHHHHHHHHHcCC-----CCcEEEEEecCChHHhccHHHHHHHHHHCC-CcEEEEEE
Confidence            7653  234799999999999999999999876432     268999999999999999999999999988 89999999


Q ss_pred             cCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022          281 SREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       281 s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                      +++++.|.|.+++|++.+.+..      +......||+|||++|++++.+.|.+.|.+..
T Consensus       275 s~~~~~~~g~~g~v~~~l~~~~------l~~~~~~vy~CGp~~mv~~~~~~L~~~Gv~~~  328 (340)
T PRK11872        275 SKASADWQGKRGYIHEHFDKAQ------LRDQAFDMYLCGPPPMVEAVKQWLDEQALENY  328 (340)
T ss_pred             eCCCCcCCCceeeccHHHHHhh------cCcCCCEEEEeCCHHHHHHHHHHHHHcCCCHH
Confidence            9888889999999998776421      22134679999999999999999999988753

>PRK06214 sulfite reductase; Provisional

Probab=100.00  E-value=4.1e-40  Score=324.36  Aligned_cols=270  Identities=33%  Similarity=0.580  Sum_probs=224.6

Q ss_pred             ccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCC-------------C----------
Q 043022           77 NKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVD-------------K----------  132 (361)
Q Consensus        77 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~-------------~----------  132 (361)
                      ..|....++.++|+++.+++......++++|+|+.+. .+.|+||+++.|.+.+..             .          
T Consensus       161 ~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~~~tlr  240 (530)
T PRK06214        161 LGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPIGGKTLR  240 (530)
T ss_pred             CccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCccCCccHH
Confidence            3466778899999999999998878889999999864 688999999999765431             0          


Q ss_pred             -----------------------------------------CC----------------------------CCCCceecc
Q 043022          133 -----------------------------------------NA----------------------------KPHKLRLYS  143 (361)
Q Consensus       133 -----------------------------------------~~----------------------------~~~~~R~yS  143 (361)
                                                               .+                            .++++|+||
T Consensus       241 ~~L~~~~Dl~~~p~~~~~~la~~~~~~~~~~l~~L~~~~~~~~~~~~~~vldvL~~fp~~~~~~~~lle~lp~l~pR~YS  320 (530)
T PRK06214        241 EALLEDVSLGPAPDGLFELLSYITGGAARKKARALAAGEDPDGDAATLDVLAALEKFPGIRPDPEAFVEALDPLQPRLYS  320 (530)
T ss_pred             HHHHHheeccCCCHHHHHHHHHhCCcHHHHHHHHhhcccChhhhhhhCcHHHHHHhCCCCCCCHHHHHhhcCCCCcEEEE
Confidence                                                     00                            345789999


Q ss_pred             cccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchh
Q 043022          144 IASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIA  222 (361)
Q Consensus       144 ias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGia  222 (361)
                      |+|+|..   +++.++|+|+++.|.. .++.+.|.+|+||++ +++|+.|.+.++.+..|.++.+..+|+||||+|||||
T Consensus       321 ISSsP~~---~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIA  396 (530)
T PRK06214        321 ISSSPKA---TPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGTRVRVYVQKAHGFALPADPNTPIIMVGPGTGIA  396 (530)
T ss_pred             eccCCcC---CCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCCEEEEEecCCCCCccCCCCCCCEEEEcCCeeHH
Confidence            9999964   4789999999987763 455678999999985 9999999987633322677766678999999999999


Q ss_pred             hHHHHHHHHHhhcccccccCCeEEEEEeccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh
Q 043022          223 PFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY  301 (361)
Q Consensus       223 P~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~  301 (361)
                      ||++|++++.....     .++++||||+|+. .|++|.+||++|.+.+. ++++++++||++.    .+.|||++|.+.
T Consensus       397 PfrsfLq~r~~~~~-----~g~~~LffG~R~~~~D~ly~dEL~~l~~~g~-l~~l~~afSRd~~----~k~YVQ~~L~e~  466 (530)
T PRK06214        397 PFRAFLHERAATKA-----PGRNWLFFGHQRSATDFFYEDELNGLKAAGV-LTRLSLAWSRDGE----EKTYVQDRMREN  466 (530)
T ss_pred             HHHHHHHHHHHhcC-----CCCeEEEEEecCChhhhHHHHHHHHHHHhCC-ceEEEEEEecCCC----CCCchhhHHHHH
Confidence            99999997664332     3689999999775 59999999999998766 7889999999764    678999999998


Q ss_pred             HHHHHHHhccCCeEEEEECCcc-hHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          302 ANELWELLKKDNTYVYMCGLRG-MEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       302 ~~~~~~~l~~~~~~vyvCGp~~-m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      .+++++++. ++++||||||.. |.++|+++|.++..+++    .++++|+++|+++|||++|||
T Consensus       467 ~~~l~~~l~-~~a~iYVCGp~~~M~~~V~~~L~~il~~~g~~s~~~A~~~l~~l~~~gRY~~Dvw  530 (530)
T PRK06214        467 GAELWKWLE-EGAHFYVCGDAKRMAKDVERALVDIVAQFGGRSPDEAVAFVAELKKAGRYQADVY  530 (530)
T ss_pred             HHHHHhhhc-CCcEEEEeCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEecC
Confidence            888888876 689999999975 77999999999988875    567889999999999999999

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=100.00  E-value=1.2e-40  Score=316.99  Aligned_cols=252  Identities=22%  Similarity=0.285  Sum_probs=207.7

Q ss_pred             cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcE
Q 043022           45 GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQS  122 (361)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~  122 (361)
                      ..+++.++|+..+.++++++.......      ...|.+.+.++|++++.++++     ++.|+|+.+.  .+.|+||||
T Consensus        69 ~~~g~~L~C~~~~~~d~~i~~~~~~~~------~~~~~~~~~~~V~~~~~~~~d-----~~~l~l~~~~~~~~~~~pGQf  137 (339)
T PRK07609         69 RAAGEALTCCAKPLSDLVLEAREVPAL------GDIPVKKLPCRVASLERVAGD-----VMRLKLRLPATERLQYLAGQY  137 (339)
T ss_pred             HhCCcEEEeeCEECCCEEEEecccccc------ccccceEEEEEEEEEEcCCCc-----EEEEEEEcCCCCCCccCCCCe
Confidence            456788999999999988864222111      113566789999999999999     9999999863  578999999


Q ss_pred             EEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCC
Q 043022          123 IGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKE  201 (361)
Q Consensus       123 v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~  201 (361)
                      +.|.+++.       ..|+|||+|.|.    +.+.++|+|++++         +|.+|+||++ +++|+.|.+.||+|.+
T Consensus       138 v~l~~~~~-------~~R~ySias~p~----~~~~l~~~ik~~~---------~G~~s~~l~~~l~~G~~v~v~gP~G~~  197 (339)
T PRK07609        138 IEFILKDG-------KRRSYSIANAPH----SGGPLELHIRHMP---------GGVFTDHVFGALKERDILRIEGPLGTF  197 (339)
T ss_pred             EEEECCCC-------ceeeeecCCCCC----CCCEEEEEEEecC---------CCccHHHHHHhccCCCEEEEEcCceeE
Confidence            99998642       479999999986    5589999999986         8999999985 9999999999999997


Q ss_pred             cCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEec
Q 043022          202 MLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVS  281 (361)
Q Consensus       202 ~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s  281 (361)
                      ++.+ ...+++|||||||||||+++|+++++..+.     .++++||||+|+.+|+++.++|++|.++++ +|+++++++
T Consensus       198 ~~~~-~~~~~ivlIagGtGiaP~~s~l~~~~~~~~-----~~~i~l~~g~r~~~dl~~~e~l~~~~~~~~-~~~~~~~~s  270 (339)
T PRK07609        198 FLRE-DSDKPIVLLASGTGFAPIKSIVEHLRAKGI-----QRPVTLYWGARRPEDLYLSALAEQWAEELP-NFRYVPVVS  270 (339)
T ss_pred             EecC-CCCCCEEEEecCcChhHHHHHHHHHHhcCC-----CCcEEEEEecCChHHhccHHHHHHHHHhCC-CeEEEEEec
Confidence            6543 456799999999999999999999886432     268999999999999999999999998888 899999999


Q ss_pred             CC--cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022          282 RE--QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       282 ~~--~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                      ++  ++.|.+.++++++.+.+...    .+  .+..+|+|||+.|++++.+.|.+.|.+.+
T Consensus       271 ~~~~~~~~~g~~G~v~~~~~~~~~----~~--~~~~vy~CGp~~m~~~~~~~l~~~G~~~~  325 (339)
T PRK07609        271 DALDDDAWTGRTGFVHQAVLEDFP----DL--SGHQVYACGSPVMVYAARDDFVAAGLPAE  325 (339)
T ss_pred             CCCCCCCccCccCcHHHHHHhhcc----cc--cCCEEEEECCHHHHHHHHHHHHHcCCCHH
Confidence            74  45677888888877654321    12  36789999999999999999999887643

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=100.00  E-value=1.7e-39  Score=301.64  Aligned_cols=237  Identities=25%  Similarity=0.445  Sum_probs=196.5

Q ss_pred             CCeeEEEEeEeeecCCCCCCceEEEEeeCCC-------ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCC
Q 043022           83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEG-------EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDS  155 (361)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-------~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~  155 (361)
                      ....++|++++.++++. ..+++.|+|+.+.       ..+|.||||+.|.+++.      ...|+|||+|.|.     +
T Consensus        44 ~~~~~~l~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~pGQ~v~v~~~g~------~~~R~YSias~p~-----~  111 (289)
T cd06201          44 RTKALELVERKDYGAAV-QAPTAILRFKPAKRKLSGKGLPSFEAGDLLGILPPGS------DVPRFYSLASSSS-----D  111 (289)
T ss_pred             CccceEEEeeeecCCCC-CCccEEEEEeCCCcccccCCCCCcCccCEEEEecCCC------CCCceEecCCCCC-----C
Confidence            46788999999999533 2349999999876       46699999999986542      2579999999983     4


Q ss_pred             cEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEc-cCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhh
Q 043022          156 KTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITG-PVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFE  234 (361)
Q Consensus       156 ~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~g-P~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~  234 (361)
                      +.++|+||+++         .|.+|.||+++++|++|.+.+ |.|. |.++ +..+++||||||||||||++|+++..  
T Consensus       112 g~l~l~Vk~~~---------~G~~S~~L~~l~~Gd~v~v~~~~~g~-F~~~-~~~~~lvlIAgGtGIaP~~s~l~~~~--  178 (289)
T cd06201         112 GFLEICVRKHP---------GGLCSGYLHGLKPGDTIKAFIRPNPS-FRPA-KGAAPVILIGAGTGIAPLAGFIRANA--  178 (289)
T ss_pred             CeEEEEEEeCC---------CccchhhHhhCCCcCEEEEEeccCCC-ccCC-CCCCCEEEEecCcCHHHHHHHHHhhh--
Confidence            78999999876         799999999999999999985 6665 5544 44579999999999999999998752  


Q ss_pred             cccccccCCeEEEEEeccCCc-ccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCC
Q 043022          235 KHEDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDN  313 (361)
Q Consensus       235 ~~~~~~~~~~i~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~  313 (361)
                      .      .++++|+||+|+.+ |++|.+||++|.++++ ++++++++|++.     .++||++.+....+.+...+. ++
T Consensus       179 ~------~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~-~~~~~~~~s~~~-----~~g~v~~~l~~~~~~l~~~~~-~~  245 (289)
T cd06201         179 A------RRPMHLYWGGRDPASDFLYEDELDQYLADGR-LTQLHTAFSRTP-----DGAYVQDRLRADAERLRRLIE-DG  245 (289)
T ss_pred             c------cCCEEEEEEecCcccchHHHHHHHHHHHcCC-CceEEEEECCCC-----CcccchhHHHHhHHHHHHHHH-CC
Confidence            1      26899999999985 8999999999998877 888888888763     468999988776666655554 57


Q ss_pred             eEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          314 TYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       314 ~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      ..||+|||+.|++++.+.|.++..+++..    +..|++.|||.+|||
T Consensus       246 ~~vyiCGp~~M~~~v~~~L~~i~~~~~~~----~~~~~~~g~~~~d~y  289 (289)
T cd06201         246 AQIMVCGSRAMAQGVAAVLEEILAPQPLS----LDELKLQGRYAEDVY  289 (289)
T ss_pred             cEEEEECCHHHHHHHHHHHHHHHHHcCcC----HHHHHHCCCEEeecC
Confidence            89999999999999999999998776533    678888999999999

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=100.00  E-value=1.1e-38  Score=310.06  Aligned_cols=267  Identities=22%  Similarity=0.376  Sum_probs=209.6

Q ss_pred             cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCC--CccccCCCcE
Q 043022           45 GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTE--GEVPYKEGQS  122 (361)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~--~~l~~~pGQ~  122 (361)
                      ..+..+++||..+.++..++..   .+  .     .+...+.++|++++.++++     ++.++|+.+  .+++|+||||
T Consensus       104 ~~~g~rLaCq~~~~~d~~ie~~---~~--~-----~~~~~~~~~V~~~~~ls~~-----i~~l~l~~~~~~~~~~~pGQ~  168 (409)
T PRK05464        104 AKEGWRLSCQVKVKQDMKIEVP---EE--I-----FGVKKWECTVISNDNVATF-----IKELVLKIPEGEEVPFRAGGY  168 (409)
T ss_pred             ccCCcEEEeeCEECCCEEEEEC---cc--c-----ccceEEEEEEEEcccCCch-----hheEEEecCCCCcccccCCce
Confidence            4567889999999988776532   11  0     2334578999999999999     999999987  4688999999


Q ss_pred             EEEecCCCCC-------------------------CCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecC
Q 043022          123 IGVIADGVDK-------------------------NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKG  177 (361)
Q Consensus       123 v~l~~~~~~~-------------------------~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G  177 (361)
                      +.|.+++.+.                         .......|+|||+|.|.    +.+.++|+||.+.+.....+..+|
T Consensus       169 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~----~~~~l~~~vr~~~~~~~~~~~~~G  244 (409)
T PRK05464        169 IQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYSMANYPE----EKGIIMLNVRIATPPPGNPDVPPG  244 (409)
T ss_pred             EEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeeccCCCCC----CCCeEEEEEEEeecCCCcCCCCCC
Confidence            9999864210                         01123579999999986    567999999985332222233479


Q ss_pred             ccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCccc
Q 043022          178 VCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSL  257 (361)
Q Consensus       178 ~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~  257 (361)
                      .+|+||+++++||.|.|.||+|+++..  +..+++|||||||||||+++|+++++.....    .++++|+||+|+.+|+
T Consensus       245 ~~S~~L~~l~~Gd~v~v~gP~G~f~~~--~~~~~ivlIAgGtGIaP~~sml~~~l~~~~~----~~~v~L~~g~r~~~d~  318 (409)
T PRK05464        245 IMSSYIFSLKPGDKVTISGPFGEFFAK--DTDAEMVFIGGGAGMAPMRSHIFDQLKRLKS----KRKISFWYGARSLREM  318 (409)
T ss_pred             chhhHHHhCCCCCEEEEEccccCcEec--CCCceEEEEEeccChhHHHHHHHHHHhCCCC----CceEEEEEecCCHHHh
Confidence            999999999999999999999998764  3458999999999999999999887654321    2689999999999999


Q ss_pred             ccHHHHHHHHHhCCCceEEEEEecCC--cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHH
Q 043022          258 LYKEEFEKMKEKAPENFRLDFAVSRE--QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSL  335 (361)
Q Consensus       258 ~~~~el~~l~~~~~~~~~~~~~~s~~--~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~  335 (361)
                      +|.++|++|.++++ +++++++++++  .+.|.+.++++++.+.+..  +......++..||+|||+.|++++.+.|.+.
T Consensus       319 ~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~--l~~~~~~~~~~vyiCGP~~m~~av~~~L~~~  395 (409)
T PRK05464        319 FYVEDFDQLAAENP-NFKWHVALSDPLPEDNWTGYTGFIHNVLYENY--LKDHEAPEDCEYYMCGPPMMNAAVIKMLKDL  395 (409)
T ss_pred             hHHHHHHHHHHhCC-CeEEEEEEcCCCCCCCCCCccceeCHHHHHhh--hhhcCCCCCeEEEEECCHHHHHHHHHHHHHc
Confidence            99999999999888 89999998875  3467788899998776532  1111112467899999999999999999998


Q ss_pred             HHcc
Q 043022          336 AAND  339 (361)
Q Consensus       336 g~~~  339 (361)
                      |...
T Consensus       396 Gv~~  399 (409)
T PRK05464        396 GVED  399 (409)
T ss_pred             CCCH
Confidence            8774

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=100.00  E-value=7.3e-39  Score=289.98  Aligned_cols=224  Identities=23%  Similarity=0.380  Sum_probs=188.4

Q ss_pred             CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCcc--ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022           81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEV--PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV  158 (361)
Q Consensus        81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l--~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l  158 (361)
                      |.+.+.++|++++.++++     ++.++|+.+...  .|+||||+.|.+++..      ..|+|||+|.+.    +.+.+
T Consensus         3 ~~~~~~~~v~~~~~~t~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~------~~r~ySi~s~~~----~~~~l   67 (238)
T cd06211           3 NVKDFEGTVVEIEDLTPT-----IKGVRLKLDEPEEIEFQAGQYVNLQAPGYE------GTRAFSIASSPS----DAGEI   67 (238)
T ss_pred             CceEEeEEEEEEEecCCC-----EEEEEEEcCCCCcCccCCCCeEEEEcCCCC------CccccccCCCCC----CCCEE
Confidence            455778999999999999     999999987754  7999999999987532      579999999986    56899


Q ss_pred             EEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022          159 SLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE  237 (361)
Q Consensus       159 ~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~  237 (361)
                      +|+|++++         +|.+|++|++ +++|++|.|.||+|.++..+ +..+++|||||||||||+++++++++..+. 
T Consensus        68 ~l~i~~~~---------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~-~~~~~~v~iagG~GiaP~~~~l~~~~~~~~-  136 (238)
T cd06211          68 ELHIRLVP---------GGIATTYVHKQLKEGDELEISGPYGDFFVRD-SDQRPIIFIAGGSGLSSPRSMILDLLERGD-  136 (238)
T ss_pred             EEEEEECC---------CCcchhhHhhcCCCCCEEEEECCccceEecC-CCCCCEEEEeCCcCHHHHHHHHHHHHhcCC-
Confidence            99999986         7999999985 99999999999999976543 445799999999999999999999876542 


Q ss_pred             ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCc--ccCCCCeeEecchHHHhHHHHHHHhccCCeE
Q 043022          238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ--KNEKGEKMYIQTRMAEYANELWELLKKDNTY  315 (361)
Q Consensus       238 ~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~--~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~  315 (361)
                          ..++.|+|++|+.++++|.++|++|.+.++ +++++++++++.  +.|.+.++++++.+.+....   ..  ++..
T Consensus       137 ----~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~g~v~~~l~~~~~~---~~--~~~~  206 (238)
T cd06211         137 ----TRKITLFFGARTRAELYYLDEFEALEKDHP-NFKYVPALSREPPESNWKGFTGFVHDAAKKHFKN---DF--RGHK  206 (238)
T ss_pred             ----CCcEEEEEecCChhhhccHHHHHHHHHhCC-CeEEEEEECCCCCCcCcccccCcHHHHHHHhccc---cc--ccCE
Confidence                257999999999999999999999998888 899999999853  46777788888766543210   11  3678


Q ss_pred             EEEECCcchHHHHHHHHHHHHHccC
Q 043022          316 VYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       316 vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                      +|+|||+.|++++.+.|.+.|.+.+
T Consensus       207 vyvCGp~~m~~~~~~~L~~~Gv~~~  231 (238)
T cd06211         207 AYLCGPPPMIDACIKTLMQGRLFER  231 (238)
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCHH
Confidence            9999999999999999999988743

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>PRK08051 fre FMN reductase; Validated

Probab=100.00  E-value=1.1e-38  Score=287.59  Aligned_cols=219  Identities=18%  Similarity=0.231  Sum_probs=184.7

Q ss_pred             CeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022           84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK  163 (361)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~  163 (361)
                      .++++|.+++.++++     ++.|+|+.+..+.|+||||+.|.++..       ..|+|||+|.|.    +.+.++|+|+
T Consensus         2 ~~~~~v~~i~~~~~~-----~~~l~l~~~~~~~~~pGQ~v~l~~~~~-------~~r~ySias~p~----~~~~l~~~v~   65 (232)
T PRK08051          2 TLSCKVTSVEAITDT-----VYRVRLVPEAPFSFRAGQYLMVVMGEK-------DKRPFSIASTPR----EKGFIELHIG   65 (232)
T ss_pred             eeEEEEEEEecCCCC-----eEEEEEecCCCCccCCCCEEEEEcCCC-------cceeecccCCCC----CCCcEEEEEE
Confidence            578999999999999     999999988788999999999998632       479999999986    4678999999


Q ss_pred             EeeEecCCCceecCccchhhh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccC
Q 043022          164 RLVYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN  242 (361)
Q Consensus       164 ~~~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~  242 (361)
                      ..+         .|..+.++. ++++|++|.+.||+|+++..+ +..+++|||||||||||+++|+++++..+.     .
T Consensus        66 ~~~---------~~~~~~~~~~~l~~G~~v~v~gP~G~~~~~~-~~~~~~vliagG~GiaP~~~~l~~~~~~~~-----~  130 (232)
T PRK08051         66 ASE---------LNLYAMAVMERILKDGEIEVDIPHGDAWLRE-ESERPLLLIAGGTGFSYARSILLTALAQGP-----N  130 (232)
T ss_pred             EcC---------CCcchHHHHHHcCCCCEEEEEcCCCceEccC-CCCCcEEEEecCcCcchHHHHHHHHHHhCC-----C
Confidence            875         566666664 599999999999999977654 345799999999999999999999876532     2


Q ss_pred             CeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc
Q 043022          243 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR  322 (361)
Q Consensus       243 ~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~  322 (361)
                      .+++|+|++|+.++++|.+||++|+++++ +++++++++++++.|.+.++++++.+.+..      ....+..+|+|||+
T Consensus       131 ~~v~l~~g~r~~~~~~~~~el~~l~~~~~-~~~~~~~~~~~~~~~~~~~g~v~~~l~~~~------~~~~~~~vyicGp~  203 (232)
T PRK08051        131 RPITLYWGGREEDHLYDLDELEALALKHP-NLHFVPVVEQPEEGWQGKTGTVLTAVMQDF------GSLAEYDIYIAGRF  203 (232)
T ss_pred             CcEEEEEEeccHHHhhhhHHHHHHHHHCC-CcEEEEEeCCCCCCcccceeeehHHHHhhc------cCcccCEEEEECCH
Confidence            68999999999999999999999999987 899999999887788888899887665422      11135689999999


Q ss_pred             chHHHHHHHH-HHHHHccC
Q 043022          323 GMEKGIDDIM-VSLAANDG  340 (361)
Q Consensus       323 ~m~~~v~~~L-~~~g~~~~  340 (361)
                      +|++++.+.| .+.|.+..
T Consensus       204 ~m~~~v~~~l~~~~G~~~~  222 (232)
T PRK08051        204 EMAKIARELFCRERGAREE  222 (232)
T ss_pred             HHHHHHHHHHHHHcCCCHH
Confidence            9999999999 88887743

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=100.00  E-value=1.5e-38  Score=285.39  Aligned_cols=216  Identities=23%  Similarity=0.364  Sum_probs=185.5

Q ss_pred             EEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEee
Q 043022           87 GRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLV  166 (361)
Q Consensus        87 ~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~  166 (361)
                      ++|++++.++++     +++|+|+.+..+.|+||||+.|.+++.       ..|+|||+|.+.    +.+.++|+|+.++
T Consensus         1 ~~v~~~~~~t~~-----~~~l~l~~~~~~~~~pGQ~v~l~~~~~-------~~r~ySi~s~~~----~~~~l~~~vk~~~   64 (224)
T cd06189           1 CKVESIEPLNDD-----VYRVRLKPPAPLDFLAGQYLDLLLDDG-------DKRPFSIASAPH----EDGEIELHIRAVP   64 (224)
T ss_pred             CEEEEEEeCCCc-----eEEEEEecCCCcccCCCCEEEEEcCCC-------CceeeecccCCC----CCCeEEEEEEecC
Confidence            478999999999     999999998878899999999998642       479999999986    4689999999986


Q ss_pred             EecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeE
Q 043022          167 YTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLA  245 (361)
Q Consensus       167 ~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i  245 (361)
                               +|.+|++|++ +++|++|.|.||+|.++..+ ...+++|||||||||||+++++++++....     ..++
T Consensus        65 ---------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~-~~~~~ivliagG~GiaP~~~~l~~l~~~~~-----~~~v  129 (224)
T cd06189          65 ---------GGSFSDYVFEELKENGLVRIEGPLGDFFLRE-DSDRPLILIAGGTGFAPIKSILEHLLAQGS-----KRPI  129 (224)
T ss_pred             ---------CCccHHHHHHhccCCCEEEEecCCccEEecc-CCCCCEEEEecCcCHHHHHHHHHHHHhcCC-----CCCE
Confidence                     7999999987 99999999999999977543 346799999999999999999999886542     2689


Q ss_pred             EEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchH
Q 043022          246 WLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGME  325 (361)
Q Consensus       246 ~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~  325 (361)
                      +|+|++|+.++++|.++|++|+++++ +++++++++++++.|.+..+++++.+.+...      ...+..+|+|||+.|+
T Consensus       130 ~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~~------~~~~~~v~vCGp~~m~  202 (224)
T cd06189         130 HLYWGARTEEDLYLDELLEAWAEAHP-NFTYVPVLSEPEEGWQGRTGLVHEAVLEDFP------DLSDFDVYACGSPEMV  202 (224)
T ss_pred             EEEEecCChhhccCHHHHHHHHHhCC-CeEEEEEeCCCCcCCccccccHHHHHHhhcc------CccccEEEEECCHHHH
Confidence            99999999999999999999998877 8999999998877788888888876654321      1146789999999999


Q ss_pred             HHHHHHHHHHHHccC
Q 043022          326 KGIDDIMVSLAANDG  340 (361)
Q Consensus       326 ~~v~~~L~~~g~~~~  340 (361)
                      +++.+.|.+.|....
T Consensus       203 ~~~~~~l~~~G~~~~  217 (224)
T cd06189         203 YAARDDFVEKGLPEE  217 (224)
T ss_pred             HHHHHHHHHcCCCHH
Confidence            999999999887643

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=100.00  E-value=1.4e-38  Score=295.30  Aligned_cols=241  Identities=22%  Similarity=0.392  Sum_probs=191.5

Q ss_pred             CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc--cccCCCcEEEEecCCCC--------------------------C
Q 043022           81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE--VPYKEGQSIGVIADGVD--------------------------K  132 (361)
Q Consensus        81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~--l~~~pGQ~v~l~~~~~~--------------------------~  132 (361)
                      |.+.+.++|++++.++++     ++.|+|+.+..  +.|+||||+.|.++...                          .
T Consensus         6 ~~~~~~~~v~~~~~~~~d-----~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (283)
T cd06188           6 GAKKWECTVISNDNVATF-----IKELVLKLPSGEEIAFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFK   80 (283)
T ss_pred             ccceEEEEEEEcccccch-----hhheEEecCCCceeeecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccc
Confidence            556788999999999999     99999998765  78999999999986420                          0


Q ss_pred             CCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcE
Q 043022          133 NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATV  212 (361)
Q Consensus       133 ~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~i  212 (361)
                      ++ ....|+|||+|.|.    +.+.++|+||+........+...|.+|+||+++++|++|.|.||+|.++..  ...+++
T Consensus        81 ~~-~~~~R~ySias~p~----~~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~l~--~~~~~~  153 (283)
T cd06188          81 HD-EPVSRAYSLANYPA----EEGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPGDKVTASGPFGEFFIK--DTDREM  153 (283)
T ss_pred             cC-CccccccCcCCCCC----CCCeEEEEEEEeccCCccCCCCCceehhHHhcCCCCCEEEEECcccccccc--CCCCcE
Confidence            01 11359999999986    568999999974311100012279999999999999999999999987654  345799


Q ss_pred             EEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCc--ccCCCC
Q 043022          213 IMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ--KNEKGE  290 (361)
Q Consensus       213 v~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~--~~~~g~  290 (361)
                      ||||||||||||++|+++++.....    ..+++|+|++|+.++++|.++|++|.++++ ++++++++|++.  +.|.+.
T Consensus       154 vlIAgGtGItP~~s~l~~~~~~~~~----~~~v~l~~g~r~~~d~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~  228 (283)
T cd06188         154 VFIGGGAGMAPLRSHIFHLLKTLKS----KRKISFWYGARSLKELFYQEEFEALEKEFP-NFKYHPVLSEPQPEDNWDGY  228 (283)
T ss_pred             EEEEecccHhHHHHHHHHHHhcCCC----CceEEEEEecCCHHHhhHHHHHHHHHHHCC-CeEEEEEECCCCccCCCCCc
Confidence            9999999999999999987754321    268999999999999999999999999888 899999888764  567788


Q ss_pred             eeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022          291 KMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       291 ~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                      +++|++.+.+..  +.......+..+|+|||+.|++++.+.|++.|.+.+
T Consensus       229 ~G~v~~~~~~~~--~~~~~~~~~~~vyiCGP~~m~~~~~~~l~~~Gv~~~  276 (283)
T cd06188         229 TGFIHQVLLENY--LKKHPAPEDIEFYLCGPPPMNSAVIKMLDDLGVPRE  276 (283)
T ss_pred             ceeecHHHHHHH--hccCCCCCCeEEEEECCHHHHHHHHHHHHHcCCCHH
Confidence            899998776532  111111235789999999999999999999887753

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]

Probab=100.00  E-value=2.2e-40  Score=309.17  Aligned_cols=298  Identities=25%  Similarity=0.478  Sum_probs=231.5

Q ss_pred             cCCCCcccceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhhccccccccccc-ccc--cCCCCeeEE
Q 043022           14 KSTSLPTRTSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIV-NKF--KPKTPYIGR   88 (361)
Q Consensus        14 ~~~~~~~~~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~   88 (361)
                      +|.+-+.+.| -+|.|+|+++++++|+|+++  +|+++.++++++.+.-+++........+++.. ..|  +|.+    +
T Consensus       267 ~s~~~~~~~~-~~~~p~sl~~~lk~~~D~~SvPrrsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRR----t  341 (574)
T KOG1159|consen  267 SSNDRSSPLP-LLPNPLSLLNLLKYVLDFNSVPRRSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRR----T  341 (574)
T ss_pred             ccCccccccc-ccCCchhHHHHHHHhcccccCcchHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhh----h
Confidence            3444444444 58999999999999999999  99999999999999776664333322222211 122  2211    1


Q ss_pred             EEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEe
Q 043022           89 CLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT  168 (361)
Q Consensus        89 v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~  168 (361)
                      |.   .+..|     ..        .....+++.+.+.+        .+++|.|||||.|.     .-.++++|..+.|+
T Consensus       342 il---EvLeD-----F~--------sv~lp~~yl~d~~P--------~IrPR~fSIas~~~-----~~~leL~VAiV~yk  392 (574)
T KOG1159|consen  342 IL---EVLED-----FR--------SVKLPIDYLLDLLP--------VIRPRAFSIASSPG-----AHHLELLVAIVEYK  392 (574)
T ss_pred             HH---HHHHh-----ch--------hccCCHHHHHHhcc--------ccccceeeeccCCC-----CCceeEEEEEEEEe
Confidence            11   11112     11        12233333334443        45899999999995     34599999999999


Q ss_pred             cCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEE
Q 043022          169 NENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLF  248 (361)
Q Consensus       169 ~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~  248 (361)
                      +...++|.|.||+||+.|++|+.|.+.--.|. +..|.+.+.|+||||.||||||+++++++...++.      ....||
T Consensus       393 T~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g~-l~~p~~~~~PlImVGPGTGvAPfRa~i~er~~q~~------~~~~lF  465 (574)
T KOG1159|consen  393 TILKEPRRGLCSNWLASLKPGDEIPIKVRPGT-LYFPSDLNKPLIMVGPGTGVAPFRALIQERIYQGD------KENVLF  465 (574)
T ss_pred             eeccccccchhHHHHhhcCCCCeEEEEEecCc-cccCCCCCCCeEEEcCCCCcccHHHHHHHHHhhcc------CCceEE
Confidence            99999999999999999999999999877785 56676778999999999999999999987765432      455899


Q ss_pred             EeccCCc-ccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHH
Q 043022          249 LGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEK  326 (361)
Q Consensus       249 ~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~  326 (361)
                      ||||+.+ |++|.++|.++...     .++.++||+++    .+.||||.+.++.+.+++++...++.|||||+. .|..
T Consensus       466 fGCR~K~~Df~y~~eW~~~~~~-----~~~~AFSRDqe----~kvYVQh~i~e~g~~v~~Ll~~~gA~~fvaGsS~~MP~  536 (574)
T KOG1159|consen  466 FGCRNKDKDFLYEDEWTELNKR-----AFHTAFSRDQE----QKVYVQHKIRENGEEVWDLLDNLGAYFFVAGSSGKMPK  536 (574)
T ss_pred             EecccCCccccccchhhhhhcc-----hhhhhcccccc----cceeHHHHHHHhhHHHHHHHhccCCEEEEecCCCCCcH
Confidence            9999997 99999999888643     45568999987    889999999999999999998789999999977 7999


Q ss_pred             HHHHHHHHHHHccC---CCHHHHHHHHHHcCCeeEeeC
Q 043022          327 GIDDIMVSLAANDG---IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       327 ~v~~~L~~~g~~~~---~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +|..+|.++..+++   .+...|++.|++.+||+.|+|
T Consensus       537 ~V~~al~eI~~~e~g~~~e~a~~l~~lekt~ryq~ETW  574 (574)
T KOG1159|consen  537 DVKEALIEIVGKEGGFSKEVASYLKALEKTRRYQQETW  574 (574)
T ss_pred             HHHHHHHHHhhhhcCCChHHHHHHHHHHHhccccccCC
Confidence            99999999988876   234449999999999999999

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=100.00  E-value=2.8e-38  Score=306.83  Aligned_cols=267  Identities=22%  Similarity=0.364  Sum_probs=207.7

Q ss_pred             cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcE
Q 043022           45 GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQS  122 (361)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~  122 (361)
                      ..++.+++||..+.++..++..   ++      .+ +...+.++|++++.++++     ++.++|+.+.  +++|+||||
T Consensus       100 ~~~g~rLaCq~~~~~d~~i~~~---~~------~~-~~~~~~~~v~~~~~~s~~-----i~~l~l~~~~~~~~~~~pGQf  164 (405)
T TIGR01941       100 AKEGWRLSCQVKVKQDMSIEIP---EE------IF-GVKKWECEVISNDNVATF-----IKELVLKLPDGESVPFKAGGY  164 (405)
T ss_pred             hcCCcEEEeeCEECCCEEEEEC---cc------cc-ccceeeeEEEEcccccch-----hheEEEecCCCceeeecCCce
Confidence            5567899999999988776532   11      11 334678999999999999     9999999863  578999999


Q ss_pred             EEEecCCCCC-------------------------CCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecC
Q 043022          123 IGVIADGVDK-------------------------NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKG  177 (361)
Q Consensus       123 v~l~~~~~~~-------------------------~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G  177 (361)
                      +.|.++..+.                         .......|+|||+|.|.    +.+.++|+||+..+.....+..+|
T Consensus       165 v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~----~~~~l~~~vr~~~~~~~~~~~~~G  240 (405)
T TIGR01941       165 IQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYSMANYPA----EKGIIKLNVRIATPPFINSDIPPG  240 (405)
T ss_pred             EEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeecCCCCCC----CCCeEEEEEEEeccCcccCCCCCC
Confidence            9999864210                         00123579999999986    568999999985221111112379


Q ss_pred             ccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCccc
Q 043022          178 VCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSL  257 (361)
Q Consensus       178 ~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~  257 (361)
                      .+|.||+++++||.|.|.||+|.++..+  ..+++||||||||||||++|+++++.....    .++++|+||+|+.+|+
T Consensus       241 ~~S~~L~~l~~Gd~v~i~gP~G~f~l~~--~~~~lvlIAgGtGIaP~lsmi~~~l~~~~~----~~~v~l~~g~R~~~dl  314 (405)
T TIGR01941       241 IMSSYIFSLKPGDKVTISGPFGEFFAKD--TDAEMVFIGGGAGMAPMRSHIFDQLKRLKS----KRKISFWYGARSLREM  314 (405)
T ss_pred             cHHHHHhcCCCcCEEEEEeccCCCeecC--CCCCEEEEecCcCcchHHHHHHHHHhcCCC----CCeEEEEEecCCHHHH
Confidence            9999999999999999999999987653  457999999999999999999877653221    2689999999999999


Q ss_pred             ccHHHHHHHHHhCCCceEEEEEecCC--cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHH
Q 043022          258 LYKEEFEKMKEKAPENFRLDFAVSRE--QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSL  335 (361)
Q Consensus       258 ~~~~el~~l~~~~~~~~~~~~~~s~~--~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~  335 (361)
                      +|.++|++|.++++ +++++++++++  ++.|.|.++++++.+.+..  +.......+..+|+|||+.|++++.+.|.+.
T Consensus       315 ~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~g~~G~v~~~l~~~~--l~~~~~~~~~~vylCGP~~m~~av~~~L~~~  391 (405)
T TIGR01941       315 FYQEDFDQLEAENP-NFVWHVALSDPQPEDNWTGYTGFIHNVLYENY--LKDHDAPEDCEFYMCGPPMMNAAVIKMLEDL  391 (405)
T ss_pred             hHHHHHHHHHHhCC-CeEEEEEeCCCCccCCCCCccceeCHHHHHhh--hcccCCCCCeEEEEeCCHHHHHHHHHHHHHc
Confidence            99999999998888 99999998865  3567888899988775421  1111112467899999999999999999998


Q ss_pred             HHcc
Q 043022          336 AAND  339 (361)
Q Consensus       336 g~~~  339 (361)
                      |...
T Consensus       392 Gv~~  395 (405)
T TIGR01941       392 GVER  395 (405)
T ss_pred             CCCH
Confidence            8764

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=100.00  E-value=2.4e-38  Score=286.28  Aligned_cols=219  Identities=21%  Similarity=0.323  Sum_probs=184.3

Q ss_pred             eeEEEEeEeeecCCCCCCceEEEEeeCCCc------cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022           85 YIGRCLLNTKITGDDAPGETWHMVFSTEGE------VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV  158 (361)
Q Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~------l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l  158 (361)
                      ..++|++++.++++     ++.++|+.+..      +.|+||||+.|.+++.      ...|+|||+|.|.    +.+.+
T Consensus         2 ~~~~v~~~~~~~~~-----~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~R~ySi~s~~~----~~~~l   66 (236)
T cd06210           2 REAEIVAVDRVSSN-----VVRLRLQPDDAEGAGIAAEFVPGQFVEIEIPGT------DTRRSYSLANTPN----WDGRL   66 (236)
T ss_pred             ceEEEEEEeecCCc-----eEEEEEEeCCcccccccCCcCCCCEEEEEcCCC------ccceecccCCCCC----CCCEE
Confidence            36889999999999     99999998754      6799999999998742      2589999999986    46799


Q ss_pred             EEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022          159 SLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE  237 (361)
Q Consensus       159 ~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~  237 (361)
                      +|+|+..+         +|.+|++|++ +++|+.|.|.||+|.++ +.....+++|||||||||||+++|++++..... 
T Consensus        67 ~~~i~~~~---------~G~~s~~l~~~~~~Gd~v~i~gP~G~f~-l~~~~~~~~vliagGtGiaP~~~~l~~~~~~~~-  135 (236)
T cd06210          67 EFLIRLLP---------GGAFSTYLETRAKVGQRLNLRGPLGAFG-LRENGLRPRWFVAGGTGLAPLLSMLRRMAEWGE-  135 (236)
T ss_pred             EEEEEEcC---------CCccchhhhhCcCCCCEEEEecCcceee-ecCCCCccEEEEccCcchhHHHHHHHHHHhcCC-
Confidence            99999876         7999999998 99999999999999954 433445789999999999999999999876432 


Q ss_pred             ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEE
Q 043022          238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVY  317 (361)
Q Consensus       238 ~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vy  317 (361)
                          ..+++|+|++|+.+|++|.++|++|++.++ +++++++++++.+.|.+..+++++.+.+....    .. ....+|
T Consensus       136 ----~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~g~~~~~l~~~l~~----~~-~~~~vy  205 (236)
T cd06210         136 ----PQEARLFFGVNTEAELFYLDELKRLADSLP-NLTVRICVWRPGGEWEGYRGTVVDALREDLAS----SD-AKPDIY  205 (236)
T ss_pred             ----CceEEEEEecCCHHHhhhHHHHHHHHHhCC-CeEEEEEEcCCCCCcCCccCcHHHHHHHhhcc----cC-CCcEEE
Confidence                268999999999999999999999999888 89999999987677777778877665542211    11 356899


Q ss_pred             EECCcchHHHHHHHHHHHHHcc
Q 043022          318 MCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       318 vCGp~~m~~~v~~~L~~~g~~~  339 (361)
                      +|||+.|++++++.|.+.|...
T Consensus       206 icGp~~m~~~~~~~l~~~G~~~  227 (236)
T cd06210         206 LCGPPGMVDAAFAAAREAGVPD  227 (236)
T ss_pred             EeCCHHHHHHHHHHHHHcCCCH
Confidence            9999999999999999988754

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>PRK05713 hypothetical protein; Provisional

Probab=100.00  E-value=2.9e-38  Score=296.89  Aligned_cols=237  Identities=18%  Similarity=0.255  Sum_probs=191.7

Q ss_pred             cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEE
Q 043022           45 GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIG  124 (361)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~  124 (361)
                      ..++++++|+..+.+|.+++..  ..+          ...+.++|++++.++++     ++.|+|+.+..+.|+||||+.
T Consensus        64 ~~~g~~L~C~~~~~~d~~i~~~--~~~----------~~~~~~~V~~~~~~t~d-----v~~l~l~~~~~~~~~~GQfv~  126 (312)
T PRK05713         64 REQGWRLACQCRVVGDLRVEVF--DPQ----------RDGLPARVVALDWLGGD-----VLRLRLEPERPLRYRAGQHLV  126 (312)
T ss_pred             HhCCeEEEeECEECCceEEEec--Ccc----------cCcCCeEEEEEecCCCC-----EEEEEEccCCcCCcCCCCEEE
Confidence            4567899999999999887643  111          12456999999999999     999999988788999999999


Q ss_pred             EecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCC
Q 043022          125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLM  204 (361)
Q Consensus       125 l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~  204 (361)
                      |.+++.       ..|+|||+|.|.    +.+.++|+|++++         .|.+|.+|+++++|++|.+.+|.|.+|.+
T Consensus       127 l~~~~~-------~~R~ySias~p~----~~~~l~~~I~~~~---------~G~~s~~l~~l~~Gd~v~l~~p~gg~~~~  186 (312)
T PRK05713        127 LWTAGG-------VARPYSLASLPG----EDPFLEFHIDCSR---------PGAFCDAARQLQVGDLLRLGELRGGALHY  186 (312)
T ss_pred             EecCCC-------cccccccCcCCC----CCCeEEEEEEEcC---------CCccchhhhcCCCCCEEEEccCCCCceEe
Confidence            997531       479999999986    5689999999876         79999999889999999999999866554


Q ss_pred             CCC-CCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCC
Q 043022          205 PRD-PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE  283 (361)
Q Consensus       205 ~~~-~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~  283 (361)
                      +.+ ..+++||||||||||||++|+++++..+.     .++++|+||+|+.+|++|.++|++|+++++ +|++++..++.
T Consensus       187 ~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~-----~~~v~l~~g~r~~~d~~~~~el~~l~~~~~-~~~~~~~~~~~  260 (312)
T PRK05713        187 DPDWQERPLWLLAAGTGLAPLWGILREALRQGH-----QGPIRLLHLARDSAGHYLAEPLAALAGRHP-QLSVELVTAAQ  260 (312)
T ss_pred             cCCCCCCcEEEEecCcChhHHHHHHHHHHhcCC-----CCcEEEEEEcCchHHhhhHHHHHHHHHHCC-CcEEEEEECcc
Confidence            423 45799999999999999999998876542     267999999999999999999999998888 89988776532


Q ss_pred             cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022          284 QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       284 ~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                                +++.+.    ++.. . .....+|+|||++|++++.+.|.+.|.+.+
T Consensus       261 ----------~~~~l~----~~~~-~-~~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~  301 (312)
T PRK05713        261 ----------LPAALA----ELRL-V-SRQTMALLCGSPASVERFARRLYLAGLPRN  301 (312)
T ss_pred             ----------hhhhhh----hccC-C-CCCeEEEEeCCHHHHHHHHHHHHHcCCCHH
Confidence                      222222    1111 1 135789999999999999999998887654

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=100.00  E-value=7.4e-38  Score=281.60  Aligned_cols=215  Identities=22%  Similarity=0.389  Sum_probs=183.6

Q ss_pred             eeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022           85 YIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV  162 (361)
Q Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V  162 (361)
                      +.++|++++.++++     ++.++|+.+.  .+.|+||||+.|.+++..      ..|+|||+|.|.     ++.++|+|
T Consensus         2 ~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~~pGQ~v~l~~~~~~------~~r~ysi~s~~~-----~~~i~~~i   65 (228)
T cd06209           2 FEATVTEVERLSDS-----TIGLTLELDEAGALAFLPGQYVNLQVPGTD------ETRSYSFSSAPG-----DPRLEFLI   65 (228)
T ss_pred             eeEEEEEEEEcCCC-----eEEEEEEcCCCCcCccCCCCEEEEEeCCCC------cccccccccCCC-----CCeEEEEE
Confidence            47899999999999     9999999877  678999999999987432      479999999884     38999999


Q ss_pred             EEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccccc
Q 043022          163 KRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF  241 (361)
Q Consensus       163 ~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~  241 (361)
                      +.++         +|.+|+||++ +++|+.|.|.||+|.++..+  ..++++||||||||||++++++++.....     
T Consensus        66 ~~~~---------~G~~s~~l~~~l~~G~~v~v~gP~G~~~~~~--~~~~~vlia~GtGIaP~~~ll~~~~~~~~-----  129 (228)
T cd06209          66 RLLP---------GGAMSSYLRDRAQPGDRLTLTGPLGSFYLRE--VKRPLLMLAGGTGLAPFLSMLDVLAEDGS-----  129 (228)
T ss_pred             EEcC---------CCcchhhHHhccCCCCEEEEECCcccceecC--CCCeEEEEEcccCHhHHHHHHHHHHhcCC-----
Confidence            9976         7999999998 99999999999999876543  34799999999999999999999876441     


Q ss_pred             CCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECC
Q 043022          242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGL  321 (361)
Q Consensus       242 ~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp  321 (361)
                      .++++|+|++|+.++++|.++|++|.+.++ ++++++.+++++. |.+.++++++.+.+..      +...+..+|+|||
T Consensus       130 ~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~-~~~~~g~v~~~~~~~~------~~~~~~~v~icGp  201 (228)
T cd06209         130 AHPVHLVYGVTRDADLVELDRLEALAERLP-GFSFRTVVADPDS-WHPRKGYVTDHLEAED------LNDGDVDVYLCGP  201 (228)
T ss_pred             CCcEEEEEecCCHHHhccHHHHHHHHHhCC-CeEEEEEEcCCCc-cCCCcCCccHHHHHhh------ccCCCcEEEEeCC
Confidence            368999999999999999999999998888 8999999998654 7777888887766521      2224578999999


Q ss_pred             cchHHHHHHHHHHHHHcc
Q 043022          322 RGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       322 ~~m~~~v~~~L~~~g~~~  339 (361)
                      ++|++++++.|.+.|.+.
T Consensus       202 ~~m~~~~~~~l~~~G~~~  219 (228)
T cd06209         202 PPMVDAVRSWLDEQGIEP  219 (228)
T ss_pred             HHHHHHHHHHHHHcCCCH
Confidence            999999999999987764

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=100.00  E-value=7.5e-38  Score=281.36  Aligned_cols=216  Identities=22%  Similarity=0.355  Sum_probs=182.2

Q ss_pred             eeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEE
Q 043022           85 YIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR  164 (361)
Q Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~  164 (361)
                      ++++|++++.++++     +++++|+.++.++|+||||+.|.+++..      ..|+|||+|.|.    +.+.++|+|++
T Consensus         1 ~~~~v~~~~~~t~~-----~~~~~l~~~~~~~~~pGQ~~~l~~~~~~------~~r~ysi~s~~~----~~~~l~~~vk~   65 (227)
T cd06213           1 IRGTIVAQERLTHD-----IVRLTVQLDRPIAYKAGQYAELTLPGLP------AARSYSFANAPQ----GDGQLSFHIRK   65 (227)
T ss_pred             CeEEEEEEeecCCC-----EEEEEEecCCCCCcCCCCEEEEEeCCCC------cccccccCCCCC----CCCEEEEEEEE
Confidence            46899999999999     9999999987788999999999986432      589999999986    56899999998


Q ss_pred             eeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCC
Q 043022          165 LVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNG  243 (361)
Q Consensus       165 ~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~  243 (361)
                      .+         +|.+|++|++ +++|++|.|+||+|.++..+  ..+++|||||||||||+++|+++++....     .+
T Consensus        66 ~~---------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~--~~~~~lliagG~GiaP~~~~~~~~~~~~~-----~~  129 (227)
T cd06213          66 VP---------GGAFSGWLFGADRTGERLTVRGPFGDFWLRP--GDAPILCIAGGSGLAPILAILEQARAAGT-----KR  129 (227)
T ss_pred             CC---------CCcchHHHHhcCCCCCEEEEeCCCcceEeCC--CCCcEEEEecccchhHHHHHHHHHHhcCC-----CC
Confidence            76         7999999976 99999999999999976542  34789999999999999999999876432     26


Q ss_pred             eEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCc--ccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECC
Q 043022          244 LAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ--KNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGL  321 (361)
Q Consensus       244 ~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~--~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp  321 (361)
                      +++|+|++|+.+|++|.++|+++++++..+++++.+++++.  ..|.+..+++++.+.+..       . .+..+|+|||
T Consensus       130 ~i~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~s~~~~~~~~~g~~g~v~~~l~~~~-------~-~~~~v~~CGp  201 (227)
T cd06213         130 DVTLLFGARTQRDLYALDEIAAIAARWRGRFRFIPVLSEEPADSSWKGARGLVTEHIAEVL-------L-AATEAYLCGP  201 (227)
T ss_pred             cEEEEEeeCCHHHhccHHHHHHHHHhccCCeEEEEEecCCCCCCCccCCcccHHHHHHhhc-------c-CCCEEEEECC
Confidence            79999999999999999999999977554899998898763  346677777776654421       1 4689999999


Q ss_pred             cchHHHHHHHHHHHHHcc
Q 043022          322 RGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       322 ~~m~~~v~~~L~~~g~~~  339 (361)
                      ++|++++.+.|.+.|...
T Consensus       202 ~~~~~~~~~~l~~~G~~~  219 (227)
T cd06213         202 PAMIDAAIAVLRALGIAR  219 (227)
T ss_pred             HHHHHHHHHHHHHcCCCH
Confidence            999999999999988764

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=100.00  E-value=1.6e-37  Score=281.66  Aligned_cols=238  Identities=25%  Similarity=0.312  Sum_probs=189.9

Q ss_pred             EEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeE
Q 043022           88 RCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY  167 (361)
Q Consensus        88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~  167 (361)
                      +|++++.++++     +++|+|+.+..+.|+||||+.|.++..+  + +...|+|||+|.+.     ++.++|+|++++ 
T Consensus         1 ~v~~~~~~t~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~--~-~~~~R~ySi~s~~~-----~~~i~~~i~~~~-   66 (241)
T cd06195           1 TVLKRRDWTDD-----LFSFRVTRDIPFRFQAGQFTKLGLPNDD--G-KLVRRAYSIASAPY-----EENLEFYIILVP-   66 (241)
T ss_pred             CeEEEEEcCCC-----EEEEEEcCCCCCccCCCCeEEEeccCCC--C-CeeeecccccCCCC-----CCeEEEEEEEec-
Confidence            37788999998     9999999988778999999999987531  1 33579999999984     479999999876 


Q ss_pred             ecCCCceecCccchhhhcCCCCCEEEEE-ccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEE
Q 043022          168 TNENGEIVKGVCSNFLCDLKPGAEVKIT-GPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAW  246 (361)
Q Consensus       168 ~~~~~~~~~G~~S~~L~~l~~G~~v~i~-gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~  246 (361)
                              +|.+|+||+++++|+.|.+. ||+|.+...+....+++||||||||||||++|++++.....     .++++
T Consensus        67 --------~G~~s~~l~~l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~~~-----~~~v~  133 (241)
T cd06195          67 --------DGPLTPRLFKLKPGDTIYVGKKPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIWER-----FDKIV  133 (241)
T ss_pred             --------CCCCchHHhcCCCCCEEEECcCCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhhCC-----CCcEE
Confidence                    79999999999999999999 99998554332245799999999999999999999875432     36899


Q ss_pred             EEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHH-hHHHHHHH-hccCCeEEEEECCcch
Q 043022          247 LFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAE-YANELWEL-LKKDNTYVYMCGLRGM  324 (361)
Q Consensus       247 L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~-~~~~~~~~-l~~~~~~vyvCGp~~m  324 (361)
                      |+|++|+.+|++|.+||++|.+++..+|+++++++++++.| +.++++++.+.+ .+.+.... +...+..||+|||++|
T Consensus       134 l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~-~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vyiCGp~~m  212 (241)
T cd06195         134 LVHGVRYAEELAYQDEIEALAKQYNGKFRYVPIVSREKENG-ALTGRIPDLIESGELEEHAGLPLDPETSHVMLCGNPQM  212 (241)
T ss_pred             EEEccCCHHHhhhHHHHHHHHhhcCCCEEEEEEECcCCccC-CCceEhHHhhhhchhhHhhCCCCCcccCEEEEeCCHHH
Confidence            99999999999999999999987333899999999887665 567888876652 22222111 1114678999999999


Q ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          325 EKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       325 ~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      ++++.+.|.+.|......        .+.++++.|-|
T Consensus       213 ~~~~~~~l~~~G~~~~~~--------~~~~~~~~E~~  241 (241)
T cd06195         213 IDDTQELLKEKGFSKNHR--------RKPGNITVEKY  241 (241)
T ss_pred             HHHHHHHHHHcCCCcccc--------CCCceEEEecC
Confidence            999999999998885322        34567777655

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=100.00  E-value=2e-37  Score=281.88  Aligned_cols=223  Identities=17%  Similarity=0.197  Sum_probs=177.2

Q ss_pred             CCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022           83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV  162 (361)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V  162 (361)
                      .++.++|++++.++++     +++|+|+.+. .+|+||||+.|.++..+    ....|+|||+|.|.     .+.++|+|
T Consensus         3 ~~~~~~V~~i~~~t~~-----v~~l~l~~~~-~~~~pGQfv~l~~~~~g----~~~~R~ySias~p~-----~~~l~~~i   67 (248)
T PRK10926          3 DWVTGKVTKVQNWTDA-----LFSLTVHAPV-DPFTAGQFTKLGLEIDG----ERVQRAYSYVNAPD-----NPDLEFYL   67 (248)
T ss_pred             ccEEEEEEEEEEcCCC-----eEEEEEeCCC-CCCCCCCEEEEEEecCC----cEEEeeecccCCCC-----CCeEEEEE
Confidence            4788999999999999     9999998763 37999999999975221    22479999999984     45899999


Q ss_pred             EEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCC-CCCcEEEEecCCchhhHHHHHHHHHhhccccccc
Q 043022          163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRD-PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF  241 (361)
Q Consensus       163 ~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~-~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~  241 (361)
                      ++++         +|.+|+||+++++|++|.|.||.+.+|.++.. ..+++||||||||||||++|++++...+.     
T Consensus        68 k~~~---------~G~~S~~L~~l~~Gd~v~i~gp~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~~~-----  133 (248)
T PRK10926         68 VTVP---------EGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDLER-----  133 (248)
T ss_pred             EEeC---------CCCcChHHHhCCCCCEEEEecCCCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhhCC-----
Confidence            9986         89999999999999999999988666655432 34799999999999999999998764332     


Q ss_pred             CCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh-HHHHHH-HhccCCeEEEEE
Q 043022          242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY-ANELWE-LLKKDNTYVYMC  319 (361)
Q Consensus       242 ~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~-~~~~~~-~l~~~~~~vyvC  319 (361)
                      .++++|+||+|+.+|++|.+||++|+++++.++++++++|+++. +.+.++++++.+.+. ...... .+..++..+|+|
T Consensus       134 ~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~s~~~~-~~~~~G~v~~~i~~~~l~~~~~~~~~~~~~~vy~C  212 (248)
T PRK10926        134 FKNLVLVHAARYAADLSYLPLMQELEQRYEGKLRIQTVVSRETA-PGSLTGRVPALIESGELEAAVGLPMDAETSHVMLC  212 (248)
T ss_pred             CCcEEEEEeCCcHHHHHHHHHHHHHHHhCcCCEEEEEEECCCCC-CCCcCCccchhhhcchHHHHhcCCCCccCCEEEEE
Confidence            26899999999999999999999999887558999999998532 223467777765431 111111 111246789999


Q ss_pred             CCcchHHHHHHHHHHH
Q 043022          320 GLRGMEKGIDDIMVSL  335 (361)
Q Consensus       320 Gp~~m~~~v~~~L~~~  335 (361)
                      ||++|++++.+.|.+.
T Consensus       213 Gp~~Mv~~~~~~l~~~  228 (248)
T PRK10926        213 GNPQMVRDTQQLLKET  228 (248)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999999764

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=100.00  E-value=1e-37  Score=281.45  Aligned_cols=219  Identities=24%  Similarity=0.412  Sum_probs=183.4

Q ss_pred             eeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022           85 YIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV  162 (361)
Q Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V  162 (361)
                      +.++|++++.++++     +++++|+.+.  .+.|+||||+.|.+++..      ..|+|||+|.|.    +.+.++|+|
T Consensus         1 ~~~~v~~~~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~------~~r~ySi~s~~~----~~~~l~l~v   65 (232)
T cd06212           1 FVGTVVAVEALTHD-----IRRLRLRLEEPEPIKFFAGQYVDITVPGTE------ETRSFSMANTPA----DPGRLEFII   65 (232)
T ss_pred             CceEEEEEeecCCC-----eEEEEEEcCCCCcCCcCCCCeEEEEcCCCC------cccccccCCCCC----CCCEEEEEE
Confidence            36899999999999     9999998755  578999999999987432      589999999986    458999999


Q ss_pred             EEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccccc
Q 043022          163 KRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF  241 (361)
Q Consensus       163 ~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~  241 (361)
                      ++++         +|.+|++|++ +++|++|.|.||+|.++..+ ...+++|||||||||||+++|+++++..+.     
T Consensus        66 k~~~---------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~-~~~~~~l~iagG~Giap~~~~l~~~~~~~~-----  130 (232)
T cd06212          66 KKYP---------GGLFSSFLDDGLAVGDPVTVTGPYGTCTLRE-SRDRPIVLIGGGSGMAPLLSLLRDMAASGS-----  130 (232)
T ss_pred             EECC---------CCchhhHHhhcCCCCCEEEEEcCcccceecC-CCCCcEEEEecCcchhHHHHHHHHHHhcCC-----
Confidence            9976         7999999997 99999999999999876543 345799999999999999999999886532     


Q ss_pred             CCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCc--ccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEE
Q 043022          242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ--KNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMC  319 (361)
Q Consensus       242 ~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~--~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvC  319 (361)
                      .++++|+|++|+.++++|.++|++|+++++ +++++++++++.  +.|.+..+++++.+.+..    ..+  .+..+|+|
T Consensus       131 ~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~----~~~--~~~~v~~C  203 (232)
T cd06212         131 DRPVRFFYGARTARDLFYLEEIAALGEKIP-DFTFIPALSESPDDEGWSGETGLVTEVVQRNE----ATL--AGCDVYLC  203 (232)
T ss_pred             CCcEEEEEeccchHHhccHHHHHHHHHhCC-CEEEEEEECCCCCCCCCcCCcccHHHHHHhhc----cCc--cCCEEEEE
Confidence            267999999999999999999999998877 899998898764  456667778776554422    112  36789999


Q ss_pred             CCcchHHHHHHHHHHHHHccC
Q 043022          320 GLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       320 Gp~~m~~~v~~~L~~~g~~~~  340 (361)
                      ||++|++++.+.|.+.|....
T Consensus       204 Gp~~~~~~v~~~l~~~G~~~~  224 (232)
T cd06212         204 GPPPMIDAALPVLEMSGVPPD  224 (232)
T ss_pred             CCHHHHHHHHHHHHHcCCCHH
Confidence            999999999999999988753

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=100.00  E-value=1.4e-37  Score=280.60  Aligned_cols=216  Identities=24%  Similarity=0.319  Sum_probs=179.2

Q ss_pred             EEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEe
Q 043022           89 CLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT  168 (361)
Q Consensus        89 v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~  168 (361)
                      |++++.++++     +++|+|+.+..+.|+||||+.|.+++..      ..|+|||+|.|.    +.+.++|+||+.+  
T Consensus         1 ~~~~~~~t~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~------~~r~ySi~s~~~----~~~~~~~~vk~~~--   63 (232)
T cd06190           1 LVDVRELTHD-----VAEFRFALDGPADFLPGQYALLALPGVE------GARAYSMANLAN----ASGEWEFIIKRKP--   63 (232)
T ss_pred             CCceEEcCCC-----EEEEEEEcCCccccCCCCEEEEECCCCC------cccCccCCcCCC----CCCEEEEEEEEcC--
Confidence            4567888998     9999999988888999999999987532      479999999986    5689999999876  


Q ss_pred             cCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022          169 NENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL  247 (361)
Q Consensus       169 ~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L  247 (361)
                             +|.+|.+|++ +++|++|.|+||+|.++..+ +..+++|||||||||||+++|++++......   ...+++|
T Consensus        64 -------~G~~s~~l~~~~~~g~~v~v~gP~G~~~~~~-~~~~~illIagG~GiaP~~~~l~~~~~~~~~---~~~~v~l  132 (232)
T cd06190          64 -------GGAASNALFDNLEPGDELELDGPYGLAYLRP-DEDRDIVCIAGGSGLAPMLSILRGAARSPYL---SDRPVDL  132 (232)
T ss_pred             -------CCcchHHHhhcCCCCCEEEEECCcccceecC-CCCCcEEEEeeCcCHHHHHHHHHHHHhcccC---CCCeEEE
Confidence                   7999999997 79999999999999987654 3457999999999999999999998764211   1368999


Q ss_pred             EEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcc----cCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022          248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQK----NEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG  323 (361)
Q Consensus       248 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~----~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~  323 (361)
                      +|++|+.+|++|.++|++|.+.++ +++++++++++..    .|.+.++++++.+.+...+    . ..+..||+|||++
T Consensus       133 ~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~g~v~~~l~~~~~~----~-~~~~~vyiCGp~~  206 (232)
T cd06190         133 FYGGRTPSDLCALDELSALVALGA-RLRVTPAVSDAGSGSAAGWDGPTGFVHEVVEATLGD----R-LAEFEFYFAGPPP  206 (232)
T ss_pred             EEeecCHHHHhhHHHHHHHHHhCC-CEEEEEEeCCCCCCcCCCccCCcCcHHHHHHhhccC----C-ccccEEEEECCHH
Confidence            999999999999999999998866 8999998887643    3667777887766543221    1 1468999999999


Q ss_pred             hHHHHHHHHHHHHHc
Q 043022          324 MEKGIDDIMVSLAAN  338 (361)
Q Consensus       324 m~~~v~~~L~~~g~~  338 (361)
                      |++++.+.|.+.|..
T Consensus       207 m~~~v~~~l~~~g~~  221 (232)
T cd06190         207 MVDAVQRMLMIEGVV  221 (232)
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999988653

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=100.00  E-value=5.1e-37  Score=290.93  Aligned_cols=231  Identities=19%  Similarity=0.316  Sum_probs=183.5

Q ss_pred             ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022           79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV  158 (361)
Q Consensus        79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l  158 (361)
                      +.+..++.++|++++.++++     ++.|+|..+..++|+||||+.|.+++..     ...|+|||+|.|.    +.+.+
T Consensus         4 ~~~~~~~~~~V~~i~~~t~~-----v~~l~l~~~~~~~f~pGQfv~l~~~~~~-----~~~R~ySias~p~----~~~~l   69 (332)
T PRK10684          4 PTPQCPNRMQVHSIVQETPD-----VWTISLICHDFYPYRAGQYALVSIRNSA-----ETLRAYTLSSTPG----VSEFI   69 (332)
T ss_pred             cCCCCceeEEEEEEEccCCC-----eEEEEEcCCCCCCcCCCCEEEEEecCCC-----EeeeeecccCCCC----CCCcE
Confidence            34556789999999999999     9999999877788999999999986421     2469999999986    56789


Q ss_pred             EEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022          159 SLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE  237 (361)
Q Consensus       159 ~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~  237 (361)
                      +|+||+++         +|.+|+||++ +++|++|.+.||+|+|++ +....+++|||||||||||+++|+++++.... 
T Consensus        70 ~i~Vk~~~---------~G~~S~~L~~~l~~Gd~v~v~gP~G~f~l-~~~~~~~~vliAgG~GItP~~sml~~~~~~~~-  138 (332)
T PRK10684         70 TLTVRRID---------DGVGSQWLTRDVKRGDYLWLSDAMGEFTC-DDKAEDKYLLLAAGCGVTPIMSMRRWLLKNRP-  138 (332)
T ss_pred             EEEEEEcC---------CCcchhHHHhcCCCCCEEEEeCCcccccc-CCCCCCcEEEEecCcCcchHHHHHHHHHhcCC-
Confidence            99999987         8999999975 999999999999998654 33445799999999999999999998875432 


Q ss_pred             ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHH-hHHHHHHHhccCCeEE
Q 043022          238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAE-YANELWELLKKDNTYV  316 (361)
Q Consensus       238 ~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~-~~~~~~~~l~~~~~~v  316 (361)
                          ..+++|+|++|+.+|++|.+||++|.++++ ++++++..++..     .+++.++++.+ ...+....+  .+..+
T Consensus       139 ----~~~v~l~y~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~~~~~-----~~~~~~grl~~~~l~~~~~~~--~~~~v  206 (332)
T PRK10684        139 ----QADVQVIFNVRTPQDVIFADEWRQLKQRYP-QLNLTLVAENNA-----TEGFIAGRLTRELLQQAVPDL--ASRTV  206 (332)
T ss_pred             ----CCCEEEEEeCCChHHhhhHHHHHHHHHHCC-CeEEEEEeccCC-----CCCccccccCHHHHHHhcccc--cCCEE
Confidence                268999999999999999999999999888 888887766532     22333444432 112211112  36789


Q ss_pred             EEECCcchHHHHHHHHHHHHHccC-CCHHHH
Q 043022          317 YMCGLRGMEKGIDDIMVSLAANDG-IDWLDY  346 (361)
Q Consensus       317 yvCGp~~m~~~v~~~L~~~g~~~~-~~~~~~  346 (361)
                      |+|||++|++++.+.|.+.|.... +..|.|
T Consensus       207 yiCGP~~m~~~v~~~l~~~Gv~~~~i~~E~F  237 (332)
T PRK10684        207 MTCGPAPYMDWVEQEVKALGVTADRFFKEKF  237 (332)
T ss_pred             EEECCHHHHHHHHHHHHHcCCCHHHeEeecc
Confidence            999999999999999999988744 444444

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=100.00  E-value=9.6e-37  Score=273.53  Aligned_cols=215  Identities=24%  Similarity=0.356  Sum_probs=181.4

Q ss_pred             EEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEe
Q 043022           89 CLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT  168 (361)
Q Consensus        89 v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~  168 (361)
                      |++++.++++     ++.++|+.+..+.|+||||+.|.+++..    . ..|+|||+|.|.    +.+.++|+|+..+  
T Consensus         1 v~~~~~~~~~-----~~~~~l~~~~~~~~~pGq~i~l~~~~~~----~-~~r~ysi~s~~~----~~~~~~~~i~~~~--   64 (224)
T cd06187           1 VVSVERLTHD-----IAVVRLQLDQPLPFWAGQYVNVTVPGRP----R-TWRAYSPANPPN----EDGEIEFHVRAVP--   64 (224)
T ss_pred             CeeeeecCCC-----EEEEEEEeCCCCCcCCCceEEEEcCCCC----C-cceeccccCCCC----CCCEEEEEEEeCC--
Confidence            4677888888     9999999888788999999999987532    1 479999999986    5589999999875  


Q ss_pred             cCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022          169 NENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL  247 (361)
Q Consensus       169 ~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L  247 (361)
                             +|.+|+||++ +++|+.|.|.||+|.++..+ ...+++|||||||||||+++|++++.....     ..+++|
T Consensus        65 -------~G~~s~~l~~~l~~G~~v~i~gP~G~~~~~~-~~~~~~lliagG~GI~p~~sll~~~~~~~~-----~~~v~l  131 (224)
T cd06187          65 -------GGRVSNALHDELKVGDRVRLSGPYGTFYLRR-DHDRPVLCIAGGTGLAPLRAIVEDALRRGE-----PRPVHL  131 (224)
T ss_pred             -------CCcchHHHhhcCccCCEEEEeCCccceEecC-CCCCCEEEEecCcCHHHHHHHHHHHHhcCC-----CCCEEE
Confidence                   7999999998 99999999999999866543 335789999999999999999999876431     368999


Q ss_pred             EEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHH
Q 043022          248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG  327 (361)
Q Consensus       248 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~  327 (361)
                      +|++|+.++++|.++|++|.++++ ++++++++++++..|.+.++++++.+.+...      ...+..+|+|||+.|+++
T Consensus       132 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~v~vcGp~~~~~~  204 (224)
T cd06187         132 FFGARTERDLYDLEGLLALAARHP-WLRVVPVVSHEEGAWTGRRGLVTDVVGRDGP------DWADHDIYICGPPAMVDA  204 (224)
T ss_pred             EEecCChhhhcChHHHHHHHHhCC-CeEEEEEeCCCCCccCCCcccHHHHHHHhcc------ccccCEEEEECCHHHHHH
Confidence            999999999999999999998877 8999988888766677788888877654321      114678999999999999


Q ss_pred             HHHHHHHHHHcc
Q 043022          328 IDDIMVSLAAND  339 (361)
Q Consensus       328 v~~~L~~~g~~~  339 (361)
                      +++.|++.|.+.
T Consensus       205 v~~~l~~~G~~~  216 (224)
T cd06187         205 TVDALLARGAPP  216 (224)
T ss_pred             HHHHHHHcCCCH
Confidence            999999987764

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=100.00  E-value=1e-36  Score=283.13  Aligned_cols=221  Identities=24%  Similarity=0.300  Sum_probs=173.8

Q ss_pred             CCCCeeEEEEeEeeecCCCCCCceEEEEee--CC---CccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCC
Q 043022           81 PKTPYIGRCLLNTKITGDDAPGETWHMVFS--TE---GEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDS  155 (361)
Q Consensus        81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~--~~---~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~  155 (361)
                      |...+.++|+++++++++     +..++|+  .+   +.++|+||||+.|.+++.       ..|+|||+|.|.    +.
T Consensus         2 ~~~~~~~~V~~~~~~t~d-----~~~~~l~~~~~~~~~~~~~~pGQ~v~l~~~~~-------~~~pySias~p~----~~   65 (289)
T PRK08345          2 PYALHDAKILEVYDLTER-----EKLFLLRFEDPELAESFTFKPGQFVQVTIPGV-------GEVPISICSSPT----RK   65 (289)
T ss_pred             CcCceeEEEEEEEecCCC-----CCEEEEEEeCccccCCCCcCCCCEEEEEcCCC-------CceeeEecCCCC----CC
Confidence            344677999999999998     5555555  34   246799999999998653       247999999986    56


Q ss_pred             cEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhc
Q 043022          156 KTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK  235 (361)
Q Consensus       156 ~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~  235 (361)
                      +.++|+||+           .|.+|.+|+++++|++|.|+||+|.+|.++....++++|||||||||||++|+++++...
T Consensus        66 ~~l~l~Ik~-----------~G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~~  134 (289)
T PRK08345         66 GFFELCIRR-----------AGRVTTVIHRLKEGDIVGVRGPYGNGFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDNR  134 (289)
T ss_pred             CEEEEEEEe-----------CChHHHHHHhCCCCCEEEEeCCCCCCCCcccccCceEEEEecccchhHHHHHHHHHHhcC
Confidence            899999997           489999999999999999999999877654334479999999999999999999887643


Q ss_pred             ccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCC------------CeeEecchHHHhHH
Q 043022          236 HEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKG------------EKMYIQTRMAEYAN  303 (361)
Q Consensus       236 ~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g------------~~~~v~~~l~~~~~  303 (361)
                      ..    .++++|+|++|+.+|++|.+||++|+++++ +|++++.+++++ .|.+            .++++.+.+.+.  
T Consensus       135 ~~----~~~v~l~~~~r~~~d~~~~deL~~l~~~~~-~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~g~v~~~~~~~--  206 (289)
T PRK08345        135 WK----YGNITLIYGAKYYEDLLFYDELIKDLAEAE-NVKIIQSVTRDP-EWPGCHGLPQGFIERVCKGVVTDLFREA--  206 (289)
T ss_pred             CC----CCcEEEEEecCCHHHhhHHHHHHHHHhcCC-CEEEEEEecCCC-CCcCccccccccccccccCchhhhhhhc--
Confidence            11    268999999999999999999999988777 899999999853 3322            123333333221  


Q ss_pred             HHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022          304 ELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       304 ~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                          .....+..+|+|||+.|++++.+.|.+.|.+.+
T Consensus       207 ----~~~~~~~~vyiCGP~~m~~~v~~~L~~~Gv~~~  239 (289)
T PRK08345        207 ----NTDPKNTYAAICGPPVMYKFVFKELINRGYRPE  239 (289)
T ss_pred             ----CCCccccEEEEECCHHHHHHHHHHHHHcCCCHH
Confidence                112245789999999999999999999887654

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=5.2e-36  Score=270.72  Aligned_cols=223  Identities=23%  Similarity=0.339  Sum_probs=182.8

Q ss_pred             eeEEEEeEeeecCCCCCCceEEEEeeCCCc--cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022           85 YIGRCLLNTKITGDDAPGETWHMVFSTEGE--VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV  162 (361)
Q Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~--l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V  162 (361)
                      ..++|++++.++++     +++++|+.+..  +.|+||||+.|.++..+  + ....|+|||+|.|.    +.+.++|+|
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~--~-~~~~r~ySi~s~~~----~~~~l~l~v   69 (235)
T cd06217           2 RVLRVTEIIQETPT-----VKTFRLAVPDGVPPPFLAGQHVDLRLTAID--G-YTAQRSYSIASSPT----QRGRVELTV   69 (235)
T ss_pred             ceEEEEEEEecCCC-----eEEEEEECCCCCcCCcCCcCeEEEEEecCC--C-ceeeeeecccCCCC----CCCeEEEEE
Confidence            35899999999999     99999999876  78999999999986422  1 22469999999986    567999999


Q ss_pred             EEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccccc
Q 043022          163 KRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF  241 (361)
Q Consensus       163 ~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~  241 (361)
                      +..+         +|.+|.+|++ +++|+.|.|.||+|.+.+.+ ...++++||||||||||+++++++++....     
T Consensus        70 ~~~~---------~G~~s~~l~~~l~~Gd~v~i~gP~G~~~~~~-~~~~~~vliagG~Giap~~~~~~~~~~~~~-----  134 (235)
T cd06217          70 KRVP---------GGEVSPYLHDEVKVGDLLEVRGPIGTFTWNP-LHGDPVVLLAGGSGIVPLMSMIRYRRDLGW-----  134 (235)
T ss_pred             EEcC---------CCcchHHHHhcCCCCCEEEEeCCceeeEeCC-CCCceEEEEecCcCccHHHHHHHHHHhcCC-----
Confidence            9976         7899999987 89999999999999865433 345789999999999999999999876532     


Q ss_pred             CCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCC-cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEEC
Q 043022          242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE-QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCG  320 (361)
Q Consensus       242 ~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~-~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCG  320 (361)
                      ..+++|+|++|+.++++|.++|.++.++++ +++++..++++ .+.|.+.++++.+.+.+   ++..  ...+..+|+||
T Consensus       135 ~~~i~l~~~~r~~~~~~~~~el~~~~~~~~-~~~~~~~~s~~~~~~~~~~~g~~~~~~l~---~~~~--~~~~~~v~icG  208 (235)
T cd06217         135 PVPFRLLYSARTAEDVIFRDELEQLARRHP-NLHVTEALTRAAPADWLGPAGRITADLIA---ELVP--PLAGRRVYVCG  208 (235)
T ss_pred             CceEEEEEecCCHHHhhHHHHHHHHHHHCC-CeEEEEEeCCCCCCCcCCcCcEeCHHHHH---hhCC--CccCCEEEEEC
Confidence            268999999999999999999999998877 89999988886 45566666777654422   1111  11467999999


Q ss_pred             CcchHHHHHHHHHHHHHccC
Q 043022          321 LRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       321 p~~m~~~v~~~L~~~g~~~~  340 (361)
                      |+.|++++.+.|.+.|.+.+
T Consensus       209 p~~m~~~v~~~l~~~Gv~~~  228 (235)
T cd06217         209 PPAFVEAATRLLLELGVPRD  228 (235)
T ss_pred             CHHHHHHHHHHHHHcCCCHH
Confidence            99999999999999887643

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=2.3e-36  Score=272.29  Aligned_cols=218  Identities=23%  Similarity=0.415  Sum_probs=177.5

Q ss_pred             EEEeEeeecCCCCCCceEEEEeeCCCc--cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022           88 RCLLNTKITGDDAPGETWHMVFSTEGE--VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL  165 (361)
Q Consensus        88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~--l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~  165 (361)
                      +|++++.++++     ++.++|+.+..  +.|+||||+.|.++..+    ....|+|||+|.|.    +.+.++|+|++.
T Consensus         2 ~v~~~~~~t~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~----~~~~R~ySi~s~~~----~~~~l~~~vk~~   68 (231)
T cd06215           2 RCVKIIQETPD-----VKTFRFAAPDGSLFAYKPGQFLTLELEIDG----ETVYRAYTLSSSPS----RPDSLSITVKRV   68 (231)
T ss_pred             eEEEEEEcCCC-----eEEEEEECCCCCcCCcCCCCeEEEEEecCC----CeEEEeeecccCCC----CCCcEEEEEEEc
Confidence            68899999999     99999999875  78999999999986432    22479999999986    567899999987


Q ss_pred             eEecCCCceecCccchhhh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCe
Q 043022          166 VYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL  244 (361)
Q Consensus       166 ~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~  244 (361)
                      +         +|.+|.||+ .+++|+.|.|.||+|.+.. +....+++|||||||||||+++|++++...+.     ..+
T Consensus        69 ~---------~G~~s~~l~~~~~~G~~v~i~gP~G~f~~-~~~~~~~~vlIagG~Giap~~~~l~~~~~~~~-----~~~  133 (231)
T cd06215          69 P---------GGLVSNWLHDNLKVGDELWASGPAGEFTL-IDHPADKLLLLSAGSGITPMMSMARWLLDTRP-----DAD  133 (231)
T ss_pred             C---------CCcchHHHHhcCCCCCEEEEEcCcceeEe-CCCCCCcEEEEecCcCcchHHHHHHHHHhcCC-----CCc
Confidence            6         799999998 4999999999999998544 33336899999999999999999999876432     267


Q ss_pred             EEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCccc-CCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022          245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKN-EKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG  323 (361)
Q Consensus       245 i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~-~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~  323 (361)
                      ++|+|++|+.++++|.++|++|.++++ ++++++++++++.. |.+..+++...+.+   +.....  .+..+|+|||++
T Consensus       134 v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~---~~~~~~--~~~~v~icGp~~  207 (231)
T cd06215         134 IVFIHSARSPADIIFADELEELARRHP-NFRLHLILEQPAPGAWGGYRGRLNAELLA---LLVPDL--KERTVFVCGPAG  207 (231)
T ss_pred             EEEEEecCChhhhhHHHHHHHHHHHCC-CeEEEEEEccCCCCcccccCCcCCHHHHH---HhcCCc--cCCeEEEECCHH
Confidence            999999999999999999999999877 89999999887553 66666666542221   111111  346899999999


Q ss_pred             hHHHHHHHHHHHHHcc
Q 043022          324 MEKGIDDIMVSLAAND  339 (361)
Q Consensus       324 m~~~v~~~L~~~g~~~  339 (361)
                      |++++.+.|.+.|...
T Consensus       208 m~~~~~~~l~~~gv~~  223 (231)
T cd06215         208 FMKAVKSLLAELGFPM  223 (231)
T ss_pred             HHHHHHHHHHHcCCCH
Confidence            9999999999887653

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=100.00  E-value=3.5e-36  Score=271.26  Aligned_cols=217  Identities=23%  Similarity=0.394  Sum_probs=175.8

Q ss_pred             EEEeEeeecCCCCCCceEEEEeeCCCc--cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022           88 RCLLNTKITGDDAPGETWHMVFSTEGE--VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL  165 (361)
Q Consensus        88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~--l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~  165 (361)
                      +|++++.++++     +++++|+.+..  +.|+||||+.|.++..+    ....|+|||+|.+     ..+.++|+|+++
T Consensus         2 ~v~~i~~~t~~-----~~~~~l~~~~~~~~~~~pGQ~v~l~~~~~~----~~~~r~ySi~s~~-----~~~~l~~~v~~~   67 (231)
T cd06191           2 RVAEVRSETPD-----AVTIVFAVPGPLQYGFRPGQHVTLKLDFDG----EELRRCYSLCSSP-----APDEISITVKRV   67 (231)
T ss_pred             EEEEEEecCCC-----cEEEEEeCCCCCCCCCCCCCeEEEEEecCC----eEEeeeeeccCCC-----CCCeEEEEEEEC
Confidence            58899999999     99999998764  57999999999975322    2257999999987     357899999997


Q ss_pred             eEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCe
Q 043022          166 VYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL  244 (361)
Q Consensus       166 ~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~  244 (361)
                      +         +|.+|+||++ +++|++|.|.||+|.+.+.+ ....++|||||||||||+++|+++++....     ..+
T Consensus        68 ~---------~G~~s~~l~~~~~~Gd~v~i~gP~G~f~l~~-~~~~~~lliagG~Gitp~~s~~~~~~~~~~-----~~~  132 (231)
T cd06191          68 P---------GGRVSNYLREHIQPGMTVEVMGPQGHFVYQP-QPPGRYLLVAAGSGITPLMAMIRATLQTAP-----ESD  132 (231)
T ss_pred             C---------CCccchHHHhcCCCCCEEEEeCCccceEeCC-CCCCcEEEEecCccHhHHHHHHHHHHhcCC-----CCC
Confidence            6         7999999985 99999999999999865443 345789999999999999999998875432     268


Q ss_pred             EEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCc--ccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc
Q 043022          245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ--KNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR  322 (361)
Q Consensus       245 i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~--~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~  322 (361)
                      +.|+|++|+.++++|.+||++|.++++ ++++++++++++  ..|.+.++++.+.+.+.   +.+  ...+..+|+|||+
T Consensus       133 v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~---~~~--~~~~~~vyicGp~  206 (231)
T cd06191         133 FTLIHSARTPADMIFAQELRELADKPQ-RLRLLCIFTRETLDSDLLHGRIDGEQSLGAA---LIP--DRLEREAFICGPA  206 (231)
T ss_pred             EEEEEecCCHHHHhHHHHHHHHHHhCC-CeEEEEEECCCCCCccccCCcccccHHHHHH---hCc--cccCCeEEEECCH
Confidence            999999999999999999999998877 999999999763  34555666665444321   111  1125789999999


Q ss_pred             chHHHHHHHHHHHHHcc
Q 043022          323 GMEKGIDDIMVSLAAND  339 (361)
Q Consensus       323 ~m~~~v~~~L~~~g~~~  339 (361)
                      .|++++++.|.+.|...
T Consensus       207 ~mv~~~~~~l~~~G~~~  223 (231)
T cd06191         207 GMMDAVETALKELGMPP  223 (231)
T ss_pred             HHHHHHHHHHHHcCCCH
Confidence            99999999999887764

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=100.00  E-value=6.4e-36  Score=267.91  Aligned_cols=213  Identities=22%  Similarity=0.371  Sum_probs=173.5

Q ss_pred             EEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEe
Q 043022           89 CLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT  168 (361)
Q Consensus        89 v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~  168 (361)
                      |++++.++++     ++.++|+.+..+.|+||||+.|.+++.       ..|+|||+|.|.    +.+.++|+|++.+  
T Consensus         1 V~~~~~~~~~-----~~~i~l~~~~~~~~~pGQ~v~l~~~~~-------~~r~ySi~s~~~----~~~~~~~~i~~~~--   62 (222)
T cd06194           1 VVSLQRLSPD-----VLRVRLEPDRPLPYLPGQYVNLRRAGG-------LARSYSPTSLPD----GDNELEFHIRRKP--   62 (222)
T ss_pred             CceeeecCCC-----EEEEEEecCCCCCcCCCCEEEEEcCCC-------CceeeecCCCCC----CCCEEEEEEEecc--
Confidence            4567788888     999999998888899999999998642       469999999986    4478999999876  


Q ss_pred             cCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022          169 NENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL  247 (361)
Q Consensus       169 ~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L  247 (361)
                             +|.+|.||++ +++|+.|.|.||+|+++..+....++++||||||||||+++++++++..+.     .++++|
T Consensus        63 -------~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~~~-----~~~v~l  130 (222)
T cd06194          63 -------NGAFSGWLGEEARPGHALRLQGPFGQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQGH-----QGEIRL  130 (222)
T ss_pred             -------CCccchHHHhccCCCCEEEEecCcCCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhcCC-----CccEEE
Confidence                   7999999998 799999999999999877653455799999999999999999999875432     368999


Q ss_pred             EEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHH
Q 043022          248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG  327 (361)
Q Consensus       248 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~  327 (361)
                      +|++|+.++++|.+||++|+++++ +++++.++++++..+..  .++.+ +.+.   +. ... .+..+|+|||+.|+++
T Consensus       131 ~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~~~~~~~~~~--~~~~~-~~~~---~~-~~~-~~~~vyicGp~~m~~~  201 (222)
T cd06194         131 VHGARDPDDLYLHPALLWLAREHP-NFRYIPCVSEGSQGDPR--VRAGR-IAAH---LP-PLT-RDDVVYLCGAPSMVNA  201 (222)
T ss_pred             EEecCChhhccCHHHHHHHHHHCC-CeEEEEEEccCCCCCcc--cccch-hhhh---hc-ccc-CCCEEEEeCCHHHHHH
Confidence            999999999999999999998877 89999988886543321  11221 2111   11 122 4688999999999999


Q ss_pred             HHHHHHHHHHccC
Q 043022          328 IDDIMVSLAANDG  340 (361)
Q Consensus       328 v~~~L~~~g~~~~  340 (361)
                      +++.|.+.|.+..
T Consensus       202 ~~~~L~~~Gv~~~  214 (222)
T cd06194         202 VRRRAFLAGAPMK  214 (222)
T ss_pred             HHHHHHHcCCCHH
Confidence            9999999887653

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=100.00  E-value=1.2e-35  Score=265.81  Aligned_cols=216  Identities=32%  Similarity=0.507  Sum_probs=174.5

Q ss_pred             eEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC
Q 043022           91 LNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE  170 (361)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~  170 (361)
                      .++.++++     ++.++|+.+..++|+||||+.|.++..+    ....|+|||+|.|.    +.+.++|+|+..+    
T Consensus         2 ~~~~~~~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~----~~~~r~ySi~s~~~----~~~~~~l~vk~~~----   64 (223)
T cd00322           2 ATEDVTDD-----VRLFRLQLPNGFSFKPGQYVDLHLPGDG----RGLRRAYSIASSPD----EEGELELTVKIVP----   64 (223)
T ss_pred             ceEEecCC-----eEEEEEecCCCCCcCCCcEEEEEecCCC----CcceeeeeccCCCC----CCCeEEEEEEEeC----
Confidence            35567777     9999999988788999999999987532    23689999999985    4589999999986    


Q ss_pred             CCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEe
Q 043022          171 NGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLG  250 (361)
Q Consensus       171 ~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g  250 (361)
                           .|.+|+||+++++|++|.|.||+|+++.. ....+++|||||||||||+++|++++.....     .++++|+|+
T Consensus        65 -----~G~~s~~l~~~~~G~~v~i~gP~G~~~~~-~~~~~~~v~ia~G~Giap~~~~l~~~~~~~~-----~~~v~l~~~  133 (223)
T cd00322          65 -----GGPFSAWLHDLKPGDEVEVSGPGGDFFLP-LEESGPVVLIAGGIGITPFRSMLRHLAADKP-----GGEITLLYG  133 (223)
T ss_pred             -----CCchhhHHhcCCCCCEEEEECCCcccccC-cccCCcEEEEecCCchhHHHHHHHHHHhhCC-----CCcEEEEEe
Confidence                 79999999999999999999999997643 3556899999999999999999999876531     368999999


Q ss_pred             ccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHH
Q 043022          251 VPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDD  330 (361)
Q Consensus       251 ~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~  330 (361)
                      +|+.++++|.++|++|.+.++ +++++++++++...+.+..+++..  .+.....  .....+..+|+|||++|++++.+
T Consensus       134 ~r~~~~~~~~~el~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~yvCGp~~m~~~~~~  208 (223)
T cd00322         134 ARTPADLLFLDELEELAKEGP-NFRLVLALSRESEAKLGPGGRIDR--EAEILAL--LPDDSGALVYICGPPAMAKAVRE  208 (223)
T ss_pred             cCCHHHhhHHHHHHHHHHhCC-CeEEEEEecCCCCCCCcccceeeH--HHHHHhh--cccccCCEEEEECCHHHHHHHHH
Confidence            999999999999999998776 999999999876655444333321  0111111  11225789999999999999999


Q ss_pred             HHHHHHHcc
Q 043022          331 IMVSLAAND  339 (361)
Q Consensus       331 ~L~~~g~~~  339 (361)
                      .|.+.|...
T Consensus       209 ~L~~~gv~~  217 (223)
T cd00322         209 ALVSLGVPE  217 (223)
T ss_pred             HHHHcCCCH
Confidence            999987653

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=100.00  E-value=3.3e-36  Score=274.82  Aligned_cols=213  Identities=23%  Similarity=0.380  Sum_probs=176.2

Q ss_pred             EEeEeeecCCCCCCceEEEEeeCCC----ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEE
Q 043022           89 CLLNTKITGDDAPGETWHMVFSTEG----EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR  164 (361)
Q Consensus        89 v~~~~~~~~~~~~~~~~~l~l~~~~----~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~  164 (361)
                      |++++.++++     +..++|+.+.    .+.|+||||+.|.++...       .|+|||+|.|.    +.+.++|+|++
T Consensus         1 v~~i~~~t~~-----v~~~~l~~~~~~~~~~~~~pGQ~i~l~~~~~~-------~~pySi~s~~~----~~~~l~~~Ik~   64 (253)
T cd06221           1 IVEVVDETED-----IKTFTLRLEDDDEELFTFKPGQFVMLSLPGVG-------EAPISISSDPT----RRGPLELTIRR   64 (253)
T ss_pred             CceEEeccCC-----ceEEEEEeCCCccccCCcCCCCEEEEEcCCCC-------ccceEecCCCC----CCCeEEEEEEe
Confidence            4577888887     7777777644    378999999999987432       48999999986    46899999997


Q ss_pred             eeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCe
Q 043022          165 LVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL  244 (361)
Q Consensus       165 ~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~  244 (361)
                                 .|.+|++|+++++|++|.|+||+|++|.++....+++||||+||||||+++|+++++.....    .++
T Consensus        65 -----------~G~~S~~L~~l~~G~~v~i~gP~G~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~----~~~  129 (253)
T cd06221          65 -----------VGRVTEALHELKPGDTVGLRGPFGNGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDNRED----YGK  129 (253)
T ss_pred             -----------CChhhHHHHcCCCCCEEEEECCcCCCcccccccCCeEEEEccccchhHHHHHHHHHHhcccc----CCc
Confidence                       48899999999999999999999997776543568999999999999999999998865321    268


Q ss_pred             EEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcch
Q 043022          245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGM  324 (361)
Q Consensus       245 i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m  324 (361)
                      ++|+|++|+.++++|.++|++|.++ + ++++.++++++.+.|.+..+++++.+.+..      ....+..||+|||+.|
T Consensus       130 i~Li~~~r~~~~~~~~~~L~~l~~~-~-~~~~~~~~s~~~~~~~~~~g~v~~~l~~~~------~~~~~~~vyicGp~~m  201 (253)
T cd06221         130 VTLLYGARTPEDLLFKEELKEWAKR-S-DVEVILTVDRAEEGWTGNVGLVTDLLPELT------LDPDNTVAIVCGPPIM  201 (253)
T ss_pred             EEEEEecCChHHcchHHHHHHHHhc-C-CeEEEEEeCCCCCCccCCccccchhHHhcC------CCcCCcEEEEECCHHH
Confidence            9999999999999999999999987 5 899999999877777777788877665422      1114678999999999


Q ss_pred             HHHHHHHHHHHHHccC
Q 043022          325 EKGIDDIMVSLAANDG  340 (361)
Q Consensus       325 ~~~v~~~L~~~g~~~~  340 (361)
                      ++++.+.|.+.|.+.+
T Consensus       202 v~~~~~~L~~~Gv~~~  217 (253)
T cd06221         202 MRFVAKELLKLGVPEE  217 (253)
T ss_pred             HHHHHHHHHHcCCCHH
Confidence            9999999999887654

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=100.00  E-value=2.2e-35  Score=276.61  Aligned_cols=228  Identities=15%  Similarity=0.162  Sum_probs=178.4

Q ss_pred             CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022           81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV  158 (361)
Q Consensus        81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l  158 (361)
                      ..+..+++|.+++.++++     +++|+|+.|.  .+.|.||||+.+.++....++ ....|+|||+|.|.    +.+.+
T Consensus        49 ~~~~~~~~V~~i~~~t~d-----v~~f~f~lp~~~~~~f~pGQ~l~l~~~~~~~~~-~~~~R~YSiaS~p~----~~~~l  118 (325)
T PTZ00274         49 SQRYEPYQLGEVIPITHD-----TALFRFLLHSEEEFNLKPCSTLQACYKYGVQPM-DQCQRFYTPVTANH----TKGYF  118 (325)
T ss_pred             CCceEEEEEEEEEEeCCC-----eEEEEEeCCcccccCCCCccEEEEEEecCCCCC-CEEEEeeecCCCCC----CCCeE
Confidence            345778999999999999     9999998765  578999999998765221111 12579999999986    56899


Q ss_pred             EEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccc
Q 043022          159 SLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED  238 (361)
Q Consensus       159 ~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~  238 (361)
                      +|+||+++         +|.+|+||+++++||+|.+.||.|.+...+ +..+++|||||||||||+++|+++++......
T Consensus       119 e~~IK~~~---------~G~~S~~L~~lk~Gd~v~v~GP~f~~~~~~-~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~  188 (325)
T PTZ00274        119 DIIVKRKK---------DGLMTNHLFGMHVGDKLLFRSVTFKIQYRP-NRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDS  188 (325)
T ss_pred             EEEEEEcC---------CCcccHHHhcCCCCCEEEEeCCeeecccCC-CCCceEEEEeCCcchhHHHHHHHHHHhccccc
Confidence            99999987         899999999999999999999987644333 34479999999999999999999987653211


Q ss_pred             -cccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCC--cccCCCCeeEecchHHHhHHHHHHHhccCCeE
Q 043022          239 -YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE--QKNEKGEKMYIQTRMAEYANELWELLKKDNTY  315 (361)
Q Consensus       239 -~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~--~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~  315 (361)
                       .....+++|+|++|+.+|++|.++|++|+++++++|+++++++++  .+.|.+..++|.+.+..   ++..........
T Consensus       189 ~~~~~~~v~Llyg~R~~~di~~~~eL~~La~~~~~~f~v~~~ls~~~~~~~w~g~~G~V~~~ll~---~~~~~~~~~~~~  265 (325)
T PTZ00274        189 GEVDRTKLSFLFCNRTERHILLKGLFDDLARRYSNRFKVYYTIDQAVEPDKWNHFLGYVTKEMVR---RTMPAPEEKKKI  265 (325)
T ss_pred             ccCCCCeEEEEEEcCCHHHhhHHHHHHHHHHhCCCcEEEEEEeCCCCcccCCCCCCCccCHHHHH---HhcCCCccCCcE
Confidence             011258999999999999999999999999888679999999865  34677777888765422   111111112357


Q ss_pred             EEEECCcchHHHHHHH
Q 043022          316 VYMCGLRGMEKGIDDI  331 (361)
Q Consensus       316 vyvCGp~~m~~~v~~~  331 (361)
                      +|+|||+.|++++...
T Consensus       266 vylCGPp~Mm~av~~~  281 (325)
T PTZ00274        266 IMLCGPDQLLNHVAGT  281 (325)
T ss_pred             EEEeCCHHHHHHhcCC
Confidence            9999999999999654

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=100.00  E-value=3.7e-35  Score=267.24  Aligned_cols=222  Identities=19%  Similarity=0.299  Sum_probs=178.7

Q ss_pred             CeeEEEEeEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022           84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL  160 (361)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~  160 (361)
                      ...++|++++.++++     +++|+|+.+..   +.|+||||+.|.++..+.  .....|+|||+|.|.     .+.++|
T Consensus         6 ~~~~~v~~~~~~s~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~--~~~~~R~ySi~s~~~-----~~~l~~   73 (247)
T cd06184           6 FRPFVVARKVAESED-----ITSFYLEPADGGPLPPFLPGQYLSVRVKLPGL--GYRQIRQYSLSDAPN-----GDYYRI   73 (247)
T ss_pred             cEEEEEEEEEEcCCC-----eEEEEEEeCCCCcCCCCCCCCEEEEEEecCCC--CCceeEEeEeccCCC-----CCeEEE
Confidence            567899999999999     99999998753   679999999999864321  023589999999984     459999


Q ss_pred             EEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccc
Q 043022          161 CVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDY  239 (361)
Q Consensus       161 ~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~  239 (361)
                      +||..+         +|.+|+||++ +++|++|.|.||+|.+ .++....++++||||||||||++++++++.....   
T Consensus        74 ~ik~~~---------~G~~s~~l~~~~~~Gd~v~i~gP~G~~-~~~~~~~~~llliagGtGiaP~~~~l~~~~~~~~---  140 (247)
T cd06184          74 SVKREP---------GGLVSNYLHDNVKVGDVLEVSAPAGDF-VLDEASDRPLVLISAGVGITPMLSMLEALAAEGP---  140 (247)
T ss_pred             EEEEcC---------CCcchHHHHhcCCCCCEEEEEcCCCce-ECCCCCCCcEEEEeccccHhHHHHHHHHHHhcCC---
Confidence            999876         7999999998 9999999999999985 4443356799999999999999999999876421   


Q ss_pred             ccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccC----CCCeeEecchHHHhHHHHHHHhccCCeE
Q 043022          240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNE----KGEKMYIQTRMAEYANELWELLKKDNTY  315 (361)
Q Consensus       240 ~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~----~g~~~~v~~~l~~~~~~~~~~l~~~~~~  315 (361)
                        ..+++|+|++|+.++++|.++|++|.++++ +++++++++++.+.+    .+..+++...+      +.+.+..++..
T Consensus       141 --~~~i~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~------l~~~~~~~~~~  211 (247)
T cd06184         141 --GRPVTFIHAARNSAVHAFRDELEELAARLP-NLKLHVFYSEPEAGDREEDYDHAGRIDLAL------LRELLLPADAD  211 (247)
T ss_pred             --CCcEEEEEEcCchhhHHHHHHHHHHHhhCC-CeEEEEEECCCCcccccccccccCccCHHH------HhhccCCCCCE
Confidence              368999999999999999999999998876 999999999875432    23344444321      11112225789


Q ss_pred             EEEECCcchHHHHHHHHHHHHHcc
Q 043022          316 VYMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       316 vyvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                      +|+|||+.|++++++.|.+.|.+.
T Consensus       212 v~icGp~~m~~~v~~~l~~~G~~~  235 (247)
T cd06184         212 FYLCGPVPFMQAVREGLKALGVPA  235 (247)
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCH
Confidence            999999999999999999987764

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=100.00  E-value=2.3e-35  Score=267.52  Aligned_cols=225  Identities=22%  Similarity=0.316  Sum_probs=181.0

Q ss_pred             eeEEEEeEeeecCCCCCCceEEEEeeCCCc----cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022           85 YIGRCLLNTKITGDDAPGETWHMVFSTEGE----VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL  160 (361)
Q Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~----l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~  160 (361)
                      +.++|++++.++++     +++++|+.+..    +.|.||||+.|.++..+    ...+|+|||+|.+.     ++.++|
T Consensus         2 ~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~g----~~~~r~ysi~s~~~-----~~~l~~   67 (241)
T cd06214           2 HPLTVAEVVRETAD-----AVSITFDVPEELRDAFRYRPGQFLTLRVPIDG----EEVRRSYSICSSPG-----DDELRI   67 (241)
T ss_pred             ceEEEEEEEecCCC-----eEEEEEecCcccCCCCCcCCCCeEEEEeecCC----CeeeeeeeecCCCC-----CCcEEE
Confidence            46789999999998     99999999864    47999999999986321    23589999999874     348999


Q ss_pred             EEEEeeEecCCCceecCccchhhh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccc
Q 043022          161 CVKRLVYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDY  239 (361)
Q Consensus       161 ~V~~~~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~  239 (361)
                      +|++++         +|.+|.||+ ++++|++|.|.||+|.++..+.+..+++||||+||||||++++++++.....   
T Consensus        68 ~i~~~~---------~G~~s~~l~~~~~~G~~v~i~gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~~~~---  135 (241)
T cd06214          68 TVKRVP---------GGRFSNWANDELKAGDTLEVMPPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALAREP---  135 (241)
T ss_pred             EEEEcC---------CCccchhHHhccCCCCEEEEeCCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHhcCC---
Confidence            999986         799999998 5999999999999998766543246899999999999999999999876532   


Q ss_pred             ccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHH-HhHHHHHHHhccCCeEEEE
Q 043022          240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA-EYANELWELLKKDNTYVYM  318 (361)
Q Consensus       240 ~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~-~~~~~~~~~l~~~~~~vyv  318 (361)
                        .++++|+|++|+.++++|.++|++|.+.+++++++..++++++..|.+..+.+...+. +..+++.  ....+..||+
T Consensus       136 --~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~v~i  211 (241)
T cd06214         136 --ASRVTLVYGNRTEASVIFREELADLKARYPDRLTVIHVLSREQGDPDLLRGRLDAAKLNALLKNLL--DATEFDEAFL  211 (241)
T ss_pred             --CCcEEEEEEeCCHHHhhHHHHHHHHHHhCcCceEEEEEecCCCCCcccccCccCHHHHHHhhhhhc--ccccCcEEEE
Confidence              2689999999999999999999999888777899988888876666555555553322 2111110  1124678999


Q ss_pred             ECCcchHHHHHHHHHHHHHcc
Q 043022          319 CGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       319 CGp~~m~~~v~~~L~~~g~~~  339 (361)
                      |||+.|++++.+.|++.|...
T Consensus       212 cGp~~mv~~v~~~l~~~G~~~  232 (241)
T cd06214         212 CGPEPMMDAVEAALLELGVPA  232 (241)
T ss_pred             ECCHHHHHHHHHHHHHcCCCH
Confidence            999999999999999987764

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=100.00  E-value=2.7e-35  Score=281.51  Aligned_cols=232  Identities=20%  Similarity=0.335  Sum_probs=180.4

Q ss_pred             eeEEEEeEeeecCCCCCCceEEEEeeCCCc----cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022           85 YIGRCLLNTKITGDDAPGETWHMVFSTEGE----VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL  160 (361)
Q Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~----l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~  160 (361)
                      ...+|++++.++++     ++.|+|+.+..    +.|+||||+.|.++..+    ....|+|||+|.|     +++.++|
T Consensus         2 ~~~~V~~i~~~t~~-----~~~l~l~~~~~~~~~~~~~pGQ~v~l~~~~~g----~~~~R~ySi~s~p-----~~~~l~i   67 (352)
T TIGR02160         2 HRLTVAEVERLTAD-----AVAISFEIPDELAEDYRFAPGQHLTLRREVDG----EELRRSYSICSAP-----APGEIRV   67 (352)
T ss_pred             eEeEEEEEEecCCC-----eEEEEEeCCccccccCCCCCCCeEEEEEecCC----cEeeeeccccCCC-----CCCcEEE
Confidence            45789999999999     99999997642    57999999999975321    2247999999988     3578999


Q ss_pred             EEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCC-CCCcEEEEecCCchhhHHHHHHHHHhhcccc
Q 043022          161 CVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRD-PNATVIMLATGTGIAPFRGFLWKMFFEKHED  238 (361)
Q Consensus       161 ~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~-~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~  238 (361)
                      +||+++         +|.+|.||++ +++||.|.|.||+|+|+..+.. ..+++|||||||||||+++|+++++..+.  
T Consensus        68 ~vk~~~---------~G~~S~~l~~~l~~Gd~v~v~gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~~~--  136 (352)
T TIGR02160        68 AVKKIP---------GGLFSTWANDEIRPGDTLEVMAPQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAAEP--  136 (352)
T ss_pred             EEEEeC---------CCcchHHHHhcCCCCCEEEEeCCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhcCC--
Confidence            999986         7999999984 9999999999999986544321 23789999999999999999998876432  


Q ss_pred             cccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEec-chHHHhHHHHHHHhccCCeEEE
Q 043022          239 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQ-TRMAEYANELWELLKKDNTYVY  317 (361)
Q Consensus       239 ~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~-~~l~~~~~~~~~~l~~~~~~vy  317 (361)
                         ..+++|+|++|+.+|++|.+||++|.+.++++++++.+++++...|.+..+.+. +.+.+.++++.. . .....+|
T Consensus       137 ---~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~gr~~~~~l~~~l~~~~~-~-~~~~~vy  211 (352)
T TIGR02160       137 ---RSTFTLVYGNRRTASVMFAEELADLKDKHPQRFHLAHVLSREPREAPLLSGRLDGERLAALLDSLID-V-DRADEWF  211 (352)
T ss_pred             ---CceEEEEEEeCCHHHHHHHHHHHHHHHhCcCcEEEEEEecCCCcCcccccCccCHHHHHHHHHhccC-c-ccCCEEE
Confidence               268999999999999999999999998887679999999987655443333332 222332222111 1 1356899


Q ss_pred             EECCcchHHHHHHHHHHHHHccC-CCHHHH
Q 043022          318 MCGLRGMEKGIDDIMVSLAANDG-IDWLDY  346 (361)
Q Consensus       318 vCGp~~m~~~v~~~L~~~g~~~~-~~~~~~  346 (361)
                      +|||++|++++++.|.+.|.... ++.|.|
T Consensus       212 iCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F  241 (352)
T TIGR02160       212 LCGPQAMVDDAEQALTGLGVPAGRVHLELF  241 (352)
T ss_pred             EECCHHHHHHHHHHHHHcCCCHHHEEEEec
Confidence            99999999999999999988643 444444

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=100.00  E-value=2.8e-35  Score=263.02  Aligned_cols=211  Identities=20%  Similarity=0.274  Sum_probs=167.8

Q ss_pred             eEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022           86 IGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL  165 (361)
Q Consensus        86 ~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~  165 (361)
                      +++|++++.++++     ++.++|+.+..+.|+||||+.|.++..+   .+...|+|||+|.|.     ++.++|+||++
T Consensus         2 ~~~v~~~~~~~~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~---~~~~~r~ySi~s~~~-----~~~l~~~vk~~   68 (218)
T cd06196           2 TVTLLSIEPVTHD-----VKRLRFDKPEGYDFTPGQATEVAIDKPG---WRDEKRPFTFTSLPE-----DDVLEFVIKSY   68 (218)
T ss_pred             ceEEEEEEEcCCC-----eEEEEEcCCCcCCCCCCCEEEEEeeCCC---CCccccccccccCCC-----CCeEEEEEEEc
Confidence            5789999999999     9999999988889999999999976432   123689999999984     47999999987


Q ss_pred             eEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeE
Q 043022          166 VYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLA  245 (361)
Q Consensus       166 ~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i  245 (361)
                      +        ..|.+|.+|+++++|++|.++||+|+++.     .+++|||||||||||+++|+++++..+.     ..++
T Consensus        69 ~--------~~g~~s~~l~~l~~G~~v~i~gP~G~~~~-----~~~~vlia~GtGiaP~~s~l~~~~~~~~-----~~~v  130 (218)
T cd06196          69 P--------DHDGVTEQLGRLQPGDTLLIEDPWGAIEY-----KGPGVFIAGGAGITPFIAILRDLAAKGK-----LEGN  130 (218)
T ss_pred             C--------CCCcHhHHHHhCCCCCEEEEECCccceEe-----cCceEEEecCCCcChHHHHHHHHHhCCC-----CceE
Confidence            5        13778999999999999999999998543     1579999999999999999999886432     2679


Q ss_pred             EEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchH
Q 043022          246 WLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGME  325 (361)
Q Consensus       246 ~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~  325 (361)
                      +|+|++|+.+|++|.+||++|.     +++++++++++.... ...+++...+   ..   +.+......+|+|||+.|+
T Consensus       131 ~l~~~~r~~~~~~~~~el~~l~-----~~~~~~~~s~~~~~~-~~~g~~~~~~---l~---~~~~~~~~~vyiCGp~~m~  198 (218)
T cd06196         131 TLIFANKTEKDIILKDELEKML-----GLKFINVVTDEKDPG-YAHGRIDKAF---LK---QHVTDFNQHFYVCGPPPME  198 (218)
T ss_pred             EEEEecCCHHHHhhHHHHHHhh-----cceEEEEEcCCCCCC-eeeeEECHHH---HH---HhcCCCCCEEEEECCHHHH
Confidence            9999999999999999999984     566777778754311 1234443211   11   2222235789999999999


Q ss_pred             HHHHHHHHHHHHcc
Q 043022          326 KGIDDIMVSLAAND  339 (361)
Q Consensus       326 ~~v~~~L~~~g~~~  339 (361)
                      +++.+.|.+.|...
T Consensus       199 ~~~~~~l~~~G~~~  212 (218)
T cd06196         199 EAINGALKELGVPE  212 (218)
T ss_pred             HHHHHHHHHcCCCH
Confidence            99999999988764

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=100.00  E-value=9.7e-35  Score=262.15  Aligned_cols=222  Identities=24%  Similarity=0.387  Sum_probs=181.1

Q ss_pred             EEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEE
Q 043022           88 RCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR  164 (361)
Q Consensus        88 ~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~  164 (361)
                      +|++++.++++     ++.++|+.+.   .+.|.||||+.|.++..+    ....|+|||+|.+.    +.+.++|+|+.
T Consensus         2 ~v~~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~----~~~~R~ysi~s~~~----~~~~~~~~v~~   68 (234)
T cd06183           2 KLVSKEDISHD-----TRIFRFELPSPDQVLGLPVGQHVELKAPDDG----EQVVRPYTPISPDD----DKGYFDLLIKI   68 (234)
T ss_pred             EeEEeEecCCC-----EEEEEEECCCCCCcCCCCcccEEEEEecCCC----cccccccccccCCC----cCCEEEEEEEE
Confidence            57889999998     9999999875   367999999999987532    23589999999986    56789999998


Q ss_pred             eeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCC-CcEEEEecCCchhhHHHHHHHHHhhcccccccCC
Q 043022          165 LVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPN-ATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNG  243 (361)
Q Consensus       165 ~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~-~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~  243 (361)
                      ++         +|.+|.||+++++|++|.|+||+|.+...+ ... +++|||||||||||+++++++++.....    ..
T Consensus        69 ~~---------~G~~s~~l~~~~~G~~v~i~gP~G~~~~~~-~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~----~~  134 (234)
T cd06183          69 YP---------GGKMSQYLHSLKPGDTVEIRGPFGKFEYKP-NGKVKHIGMIAGGTGITPMLQLIRAILKDPED----KT  134 (234)
T ss_pred             CC---------CCcchhHHhcCCCCCEEEEECCccceeecC-CCCccEEEEEcCCcchhHHHHHHHHHHhCcCc----Cc
Confidence            76         799999999999999999999999865443 333 7899999999999999999998764311    36


Q ss_pred             eEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022          244 LAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG  323 (361)
Q Consensus       244 ~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~  323 (361)
                      +++|+|++|+.++++|.++|++|...++.+++++++++++++.|.+..+++++.+.+..   .......+..+|+|||++
T Consensus       135 ~i~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~~~~~~icGp~~  211 (234)
T cd06183         135 KISLLYANRTEEDILLREELDELAKKHPDRFKVHYVLSRPPEGWKGGVGFITKEMIKEH---LPPPPSEDTLVLVCGPPP  211 (234)
T ss_pred             EEEEEEecCCHHHhhhHHHHHHHHHhCcccEEEEEEEcCCCcCCccccceECHHHHHHh---CCCCCCCCeEEEEECCHH
Confidence            89999999999999999999999987655899999999877777777888876543211   110011467899999999


Q ss_pred             hHH-HHHHHHHHHHHcc
Q 043022          324 MEK-GIDDIMVSLAAND  339 (361)
Q Consensus       324 m~~-~v~~~L~~~g~~~  339 (361)
                      |++ ++++.|.+.|...
T Consensus       212 ~~~~~~~~~l~~~G~~~  228 (234)
T cd06183         212 MIEGAVKGLLKELGYKK  228 (234)
T ss_pred             HHHHHHHHHHHHcCCCH
Confidence            999 9999999887653

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=100.00  E-value=4e-35  Score=285.08  Aligned_cols=223  Identities=18%  Similarity=0.297  Sum_probs=177.7

Q ss_pred             CeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022           84 PYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL  160 (361)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~  160 (361)
                      ...++|++++.++++     ++.|+|+.+.   .++|+||||+.|.++..+.  ....+|+|||+|.|     +++.++|
T Consensus       154 ~~~~~V~~~~~~t~~-----~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~--~~~~~R~ySias~p-----~~~~l~~  221 (399)
T PRK13289        154 WRDFRVVKKVPESEV-----ITSFYLEPVDGGPVADFKPGQYLGVRLDPEGE--EYQEIRQYSLSDAP-----NGKYYRI  221 (399)
T ss_pred             cEEEEEEEEEECCCC-----EEEEEEEcCCCCcCCCCCCCCeEEEEEecCCc--cccceeEEEeeeCC-----CCCeEEE
Confidence            456799999999999     9999999764   3679999999999753211  02235999999998     4569999


Q ss_pred             EEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccc
Q 043022          161 CVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDY  239 (361)
Q Consensus       161 ~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~  239 (361)
                      +||+.+         +|.+|+||++ +++||+|.|.||+|.+. ++....+++|||||||||||+++|+++++....   
T Consensus       222 ~Vk~~~---------~G~~S~~L~~~l~~Gd~v~v~gP~G~f~-l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~---  288 (399)
T PRK13289        222 SVKREA---------GGKVSNYLHDHVNVGDVLELAAPAGDFF-LDVASDTPVVLISGGVGITPMLSMLETLAAQQP---  288 (399)
T ss_pred             EEEECC---------CCeehHHHhhcCCCCCEEEEEcCccccc-cCCCCCCcEEEEecCccHHHHHHHHHHHHhcCC---
Confidence            999976         7999999997 99999999999999854 443456899999999999999999999875432   


Q ss_pred             ccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCccc-CCCC----eeEecchHHHhHHHHHHHhccCCe
Q 043022          240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKN-EKGE----KMYIQTRMAEYANELWELLKKDNT  314 (361)
Q Consensus       240 ~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~-~~g~----~~~v~~~l~~~~~~~~~~l~~~~~  314 (361)
                        .++++||||+|+.+|++|.+||++|.++++ +++++++++++... +.+.    .+++...+      +...+...+.
T Consensus       289 --~~~v~l~~~~r~~~~~~~~~eL~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~g~i~~~~------l~~~~~~~~~  359 (399)
T PRK13289        289 --KRPVHFIHAARNGGVHAFRDEVEALAARHP-NLKAHTWYREPTEQDRAGEDFDSEGLMDLEW------LEAWLPDPDA  359 (399)
T ss_pred             --CCCEEEEEEeCChhhchHHHHHHHHHHhCC-CcEEEEEECCCccccccCCcccccCcccHHH------HHhhCCCCCC
Confidence              368999999999999999999999999888 89999999876432 2222    23443211      2222322368


Q ss_pred             EEEEECCcchHHHHHHHHHHHHHccC
Q 043022          315 YVYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       315 ~vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                      .+|+|||+.|++++.+.|.+.|....
T Consensus       360 ~vyiCGp~~m~~~v~~~L~~~Gv~~~  385 (399)
T PRK13289        360 DFYFCGPVPFMQFVAKQLLELGVPEE  385 (399)
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCHH
Confidence            89999999999999999999887754

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=100.00  E-value=6.8e-35  Score=264.84  Aligned_cols=219  Identities=21%  Similarity=0.362  Sum_probs=177.0

Q ss_pred             CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022           82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL  160 (361)
Q Consensus        82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~  160 (361)
                      .+.+.++|++++.++++     +++++|+.+.. .+|+||||+.|.++..+    ....|+|||+|.|..   +.+.++|
T Consensus        15 ~~~~~~~v~~i~~~~~~-----~~~i~l~~~~~~~~~~pGQ~i~l~~~~~~----~~~~r~ysi~s~~~~---~~~~l~~   82 (243)
T cd06216          15 ARELRARVVAVRPETAD-----MVTLTLRPNRGWPGHRAGQHVRLGVEIDG----VRHWRSYSLSSSPTQ---EDGTITL   82 (243)
T ss_pred             cceeEEEEEEEEEcCCC-----cEEEEEecCCCCCCcCCCceEEEEEEECC----eEEEEEEeccCCCcC---CCCeEEE
Confidence            35678999999999999     99999998764 57999999999975322    225799999998841   2688999


Q ss_pred             EEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccc
Q 043022          161 CVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDY  239 (361)
Q Consensus       161 ~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~  239 (361)
                      +||.++         +|.+|.+|++ +++|++|.|.||+|. |.++.+..+++|||||||||||++++++++.....   
T Consensus        83 ~ik~~~---------~G~~s~~l~~~~~~Gd~v~i~gP~G~-f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~~~~---  149 (243)
T cd06216          83 TVKAQP---------DGLVSNWLVNHLAPGDVVELSQPQGD-FVLPDPLPPRLLLIAAGSGITPVMSMLRTLLARGP---  149 (243)
T ss_pred             EEEEcC---------CCcchhHHHhcCCCCCEEEEECCcee-eecCCCCCCCEEEEecCccHhHHHHHHHHHHhcCC---
Confidence            999976         7999999996 999999999999998 44554446899999999999999999999876531   


Q ss_pred             ccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEE
Q 043022          240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMC  319 (361)
Q Consensus       240 ~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvC  319 (361)
                        .++++|+|++|+.++++|.++|++|.++++ ++++++.++++     +..+++....   .+++....  .+..+|+|
T Consensus       150 --~~~i~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~-----~~~g~~~~~~---l~~~~~~~--~~~~vyvc  216 (243)
T cd06216         150 --TADVVLLYYARTREDVIFADELRALAAQHP-NLRLHLLYTRE-----ELDGRLSAAH---LDAVVPDL--ADRQVYAC  216 (243)
T ss_pred             --CCCEEEEEEcCChhhhHHHHHHHHHHHhCC-CeEEEEEEcCC-----ccCCCCCHHH---HHHhccCc--ccCeEEEE
Confidence              368999999999999999999999998877 89999888875     2344443321   11211111  35799999


Q ss_pred             CCcchHHHHHHHHHHHHHc
Q 043022          320 GLRGMEKGIDDIMVSLAAN  338 (361)
Q Consensus       320 Gp~~m~~~v~~~L~~~g~~  338 (361)
                      ||++|++++.+.|++.|.+
T Consensus       217 Gp~~m~~~~~~~l~~~Gv~  235 (243)
T cd06216         217 GPPGFLDAAEELLEAAGLA  235 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCc
Confidence            9999999999999998887

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>PRK08221 anaerobic sulfite reductase subunit B; Provisional

Probab=100.00  E-value=1.6e-34  Score=264.80  Aligned_cols=212  Identities=23%  Similarity=0.314  Sum_probs=172.5

Q ss_pred             CeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022           84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK  163 (361)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~  163 (361)
                      ++.++|+++++++++     ++.|+|..+  ..|+||||+.|.+++.       ..|+|||++.+      .+.++|+|+
T Consensus         7 ~~~~~v~~i~~~t~~-----~~~~~l~~~--~~~~pGQfi~l~~~~~-------~~~pySi~~~~------~~~~~~~Ik   66 (263)
T PRK08221          7 PAAYKILDITKHTDI-----EYTFRVEVD--GPVKPGQFFEVSLPKV-------GEAPISVSDYG------DGYIDLTIR   66 (263)
T ss_pred             CccEEEEEEeccCCc-----EEEEEecCC--CCCCCCceEEEEeCCC-------CcceeeccCCC------CCEEEEEEE
Confidence            567999999999999     999999975  4799999999998753       24899999874      368999998


Q ss_pred             EeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCC
Q 043022          164 RLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNG  243 (361)
Q Consensus       164 ~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~  243 (361)
                      +           .|.+|++|+++++|+.|.|+||+|+.|.++....+++|||||||||||+++|+++++.....    .+
T Consensus        67 ~-----------~G~~S~~L~~l~~Gd~v~v~gP~G~~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~~~~~----~~  131 (263)
T PRK08221         67 R-----------VGKVTDEIFNLKEGDKLFLRGPYGNGFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYENPQE----IK  131 (263)
T ss_pred             e-----------CCchhhHHHhCCCCCEEEEECCCCCCcccCccCCccEEEEcccccHHHHHHHHHHHHhCccc----Cc
Confidence            7           48999999999999999999999986655544557999999999999999999988754321    25


Q ss_pred             eEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022          244 LAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG  323 (361)
Q Consensus       244 ~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~  323 (361)
                      +++|+|++|+.++++|.+||++|.+.+  +  +++.+++....|.+..+++++.+.+..     .....+..+|+|||++
T Consensus       132 ~v~L~~g~r~~~~l~~~~el~~~~~~~--~--~~~~~~~~~~~~~~~~G~v~~~l~~~~-----~~~~~~~~vylCGp~~  202 (263)
T PRK08221        132 SLDLILGFKNPDDILFKEDLKRWREKI--N--LILTLDEGEEGYRGNVGLVTKYIPELT-----LKDIDNMQVIVVGPPI  202 (263)
T ss_pred             eEEEEEecCCHHHhhHHHHHHHHhhcC--c--EEEEecCCCCCCccCccccChhhHhcc-----CCCcCCeEEEEECCHH
Confidence            899999999999999999999998753  3  455567666667777788876554410     0111467899999999


Q ss_pred             hHHHHHHHHHHHHHcc
Q 043022          324 MEKGIDDIMVSLAAND  339 (361)
Q Consensus       324 m~~~v~~~L~~~g~~~  339 (361)
                      |++++.+.|.+.|.+.
T Consensus       203 mv~~~~~~L~~~Gv~~  218 (263)
T PRK08221        203 MMKFTVLEFLKRGIKE  218 (263)
T ss_pred             HHHHHHHHHHHcCCCH
Confidence            9999999999887764

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]

Probab=100.00  E-value=3.5e-34  Score=258.97  Aligned_cols=228  Identities=25%  Similarity=0.311  Sum_probs=194.4

Q ss_pred             CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcE
Q 043022           81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKT  157 (361)
Q Consensus        81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~  157 (361)
                      |...+..++++.+.+++|     +..++|.++.   .+.+..|||+.+..+-.+    ....|+||+.|.+.    +.+.
T Consensus        48 ~~~~~~~~l~~k~~~shd-----t~~f~f~lp~~~~~l~lp~g~hv~~~~~i~g----~~vvRpYTPvs~~~----~~g~  114 (286)
T KOG0534|consen   48 PESYYPFRLIDKTELSHD-----TSLFRFVLPSADHVLGLPIGQHVVLKAPIGG----KLVVRPYTPVSLDD----DKGY  114 (286)
T ss_pred             CcceEEEEEEEEEeccCC-----ceeEEEecCCchhccCcccceEEEEEecCCC----cEEEEecCCccCcc----ccce
Confidence            445788999999999999     8888888874   477999999999987543    33689999999986    5589


Q ss_pred             EEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022          158 VSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE  237 (361)
Q Consensus       158 l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~  237 (361)
                      ++|.||.++         +|.+|.||+.++.||.|.++||.|.+.+.+. ..+.+.|||||||||||++++++++....+
T Consensus       115 ~~l~VK~Y~---------~G~mS~~l~~LkiGd~ve~rGP~G~~~~~~~-~~~~l~miAgGtGItPmlqii~~il~~~~d  184 (286)
T KOG0534|consen  115 FDLVVKVYP---------KGKMSQHLDSLKIGDTVEFRGPIGEFKYDPQ-KAKHLGMIAGGTGITPMLQLIRAILKDPED  184 (286)
T ss_pred             EEEEEEecc---------CCcccHHHhcCCCCCEEEEecCccceEecCC-CcceEEEEecccchhhHHHHHHHHhcCCCC
Confidence            999999998         8999999999999999999999999877764 478999999999999999999999876543


Q ss_pred             ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEE
Q 043022          238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVY  317 (361)
Q Consensus       238 ~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vy  317 (361)
                          ..+++|+|++++.+|+++++||++++.+++++|.++++++.++..|.+..+||...+...  .+..... +...++
T Consensus       185 ----~tki~lly~N~te~DILlr~eL~~la~~~p~rf~~~y~v~~~~~~w~~~~g~It~~~i~~--~l~~~~~-~~~~~l  257 (286)
T KOG0534|consen  185 ----TTKISLLYANKTEDDILLREELEELASKYPERFKVWYVVDQPPEIWDGSVGFITKDLIKE--HLPPPKE-GETLVL  257 (286)
T ss_pred             ----CcEEEEEEecCCccccchHHHHHHHHhhCcceEEEEEEEcCCcccccCccCccCHHHHHh--hCCCCCC-CCeEEE
Confidence                478999999999999999999999999999999999999999999999999998655431  1111121 258999


Q ss_pred             EECCcchHH-HHHHHHHHHHHc
Q 043022          318 MCGLRGMEK-GIDDIMVSLAAN  338 (361)
Q Consensus       318 vCGp~~m~~-~v~~~L~~~g~~  338 (361)
                      +|||++|++ ++...|.++|..
T Consensus       258 iCGPp~m~~~~~~~~le~Lg~~  279 (286)
T KOG0534|consen  258 ICGPPPMINGAAQGNLEKLGYN  279 (286)
T ss_pred             EECCHHHHhHHHHHHHHhcCCC
Confidence            999999998 577777777765

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=100.00  E-value=7e-34  Score=265.09  Aligned_cols=242  Identities=20%  Similarity=0.261  Sum_probs=180.5

Q ss_pred             cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCc
Q 043022           80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSK  156 (361)
Q Consensus        80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~  156 (361)
                      .+.....++|++++.++++     ++.++|+.+.   .+.|+||||+.|.++..+.+......|+|||+|.|.    +.+
T Consensus        29 ~~~~~~~~~v~~~~~~s~d-----~~~~~~~~~~~~~~~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~----~~~   99 (300)
T PTZ00319         29 DPDMFQHFKLIKKTEVTHD-----TFIFRFALHSPTQRLGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDD----EKG   99 (300)
T ss_pred             CcCceEEEEEEEEEEcCCC-----ceEEEEECCCCcccCCCccceEEEEEEEeCCCCccceEEeeeccCCCcc----cCC
Confidence            3555677999999999999     9999998643   367999999999986422111112579999999986    678


Q ss_pred             EEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCC--------------CCCCcEEEEecCCchh
Q 043022          157 TVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPR--------------DPNATVIMLATGTGIA  222 (361)
Q Consensus       157 ~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~--------------~~~~~iv~Ia~GtGia  222 (361)
                      .++|+||++........+.+|.+|+||+.+++||.|.|+||+|.+.+...              ...++++|||||||||
T Consensus       100 ~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIa  179 (300)
T PTZ00319        100 YVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLGDKIEMRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGIT  179 (300)
T ss_pred             EEEEEEEEeccCCCCCCCCCCChhhhhhcCCCCCEEEEEccceeeEecCCcceeeccccccccccccceEEEEecCcccC
Confidence            99999998610000000126999999988999999999999998644321              1125899999999999


Q ss_pred             hHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCC-cccCCCCeeEecchHHHh
Q 043022          223 PFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE-QKNEKGEKMYIQTRMAEY  301 (361)
Q Consensus       223 P~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~-~~~~~g~~~~v~~~l~~~  301 (361)
                      ||++|+++++.....    ..++.|+||+|+.++++|.++|+++. ..+ ++++++.++++ ...|.+..++|...+.+.
T Consensus       180 P~~sml~~l~~~~~~----~~~i~liyg~r~~~dl~~~~eL~~~~-~~~-~~~~~~~~~~~~~~~~~~~~G~v~~~~l~~  253 (300)
T PTZ00319        180 PMLQIIHAIKKNKED----RTKVFLVYANQTEDDILLRKELDEAA-KDP-RFHVWYTLDREATPEWKYGTGYVDEEMLRA  253 (300)
T ss_pred             HHHHHHHHHHhCCCC----CceEEEEEecCCHHHhhHHHHHHHHh-hCC-CEEEEEEECCCCCCCcccccceeCHHHHHh
Confidence            999999998764321    25899999999999999999999954 455 89999999874 456777788888754432


Q ss_pred             HHHHHHHhc-----cCCeEEEEECCcchHH-HHHHHHHHHHHcc
Q 043022          302 ANELWELLK-----KDNTYVYMCGLRGMEK-GIDDIMVSLAAND  339 (361)
Q Consensus       302 ~~~~~~~l~-----~~~~~vyvCGp~~m~~-~v~~~L~~~g~~~  339 (361)
                      .   ....+     .++..+|+|||++|++ ++.+.|+++|...
T Consensus       254 ~---~~~~~~~~~~~~~~~vyiCGp~~mv~~~~~~~L~~~G~~~  294 (300)
T PTZ00319        254 H---LPVPDPQNSGIKKVMALMCGPPPMLQMAVKPNLEKIGYTA  294 (300)
T ss_pred             h---cCCccccccccCCeEEEEECCHHHHHHHHHHHHHHcCCCH
Confidence            1   11111     1257899999999999 5788998887653

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=100.00  E-value=1.6e-33  Score=256.48  Aligned_cols=217  Identities=22%  Similarity=0.303  Sum_probs=174.7

Q ss_pred             CCeeEEEEeEeeecCCCCCCceEEEEeeCCCcc--ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022           83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEGEV--PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL  160 (361)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l--~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~  160 (361)
                      ...+.+|.+++..+++     ++.|+|..+...  +|+||||+.|.++..+.    ...|.|||+|+|.    ++..+.|
T Consensus         4 ~~~~~~V~~v~~~t~d-----i~sf~l~~~~g~~~~f~pGQ~i~v~l~~~~~----~~~R~YSl~s~p~----~~~~~~i   70 (266)
T COG1018           4 GFRRVTVTSVEPETDD-----VFSFTLEPPDGLRLDFEPGQYITVGLPNGGE----PLLRAYSLSSAPD----EDSLYRI   70 (266)
T ss_pred             ceEEEEEEEEEEecCc-----eEEEEEEcCCCCccccCCCCeEEEEecCCCc----eeeEEEEeccCCC----CCceEEE
Confidence            4678999999999999     999999998866  59999999999876542    3699999999996    5579999


Q ss_pred             EEEEeeEecCCCceecCccchhhh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccc
Q 043022          161 CVKRLVYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDY  239 (361)
Q Consensus       161 ~V~~~~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~  239 (361)
                      .||+.+         +|.+|+||+ ++++||+|.|.+|.|.|.+. ..+..+++|||||+|||||+||++.+...+.   
T Consensus        71 sVk~~~---------~G~~S~~Lh~~lk~Gd~l~v~~P~G~F~l~-~~~~~~~llla~G~GITP~lSml~~~~~~~~---  137 (266)
T COG1018          71 SVKRED---------GGGGSNWLHDHLKVGDTLEVSAPAGDFVLD-DLPERKLLLLAGGIGITPFLSMLRTLLDRGP---  137 (266)
T ss_pred             EEEEeC---------CCcccHHHHhcCCCCCEEEEecCCCCccCC-CCCCCcEEEEeccccHhHHHHHHHHHHHhCC---
Confidence            999986         699999999 59999999999999986554 3455699999999999999999999876541   


Q ss_pred             ccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEE
Q 043022          240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMC  319 (361)
Q Consensus       240 ~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvC  319 (361)
                         .++.|+|++|+.+++.|.+| +.+..++++...+....++..     ..+++.-.      .+.......+..+|+|
T Consensus       138 ---~~v~l~h~~R~~~~~af~de-~~l~~~~~~~~~~~~~~~~~~-----~~g~~~~~------~l~~~~~~~~r~~y~C  202 (266)
T COG1018         138 ---ADVVLVHAARTPADLAFRDE-LELAAELPNALLLGLYTERGK-----LQGRIDVS------RLLSAAPDGGREVYLC  202 (266)
T ss_pred             ---CCEEEEEecCChhhcchhhH-HHHHhhCCCCeeEEEEEecCC-----ccccccHH------HHhccCCCCCCEEEEE
Confidence               57999999999999999999 999999885566666554111     22222111      1111122123899999


Q ss_pred             CCcchHHHHHHHHHHHHHccC
Q 043022          320 GLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       320 Gp~~m~~~v~~~L~~~g~~~~  340 (361)
                      ||.+|+++|+..|.++|.+..
T Consensus       203 Gp~~fm~av~~~l~~~g~~~~  223 (266)
T COG1018         203 GPGPFMQAVRLALEALGVPDD  223 (266)
T ss_pred             CCHHHHHHHHHHHHHcCCChh
Confidence            999999999999999998865

>TIGR02911 sulfite_red_B sulfite reductase, subunit B

Probab=100.00  E-value=7.9e-34  Score=260.00  Aligned_cols=212  Identities=20%  Similarity=0.286  Sum_probs=170.3

Q ss_pred             CeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022           84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK  163 (361)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~  163 (361)
                      ++.++|+++...+++     ++.+++..+  ++|+||||+.|.++..       ..|+|||++.      +.+.++|+||
T Consensus         5 ~~~~~v~~~~~~t~~-----~~~~~~~~~--~~~~pGQ~v~l~~~~~-------~~~pySi~~~------~~~~l~~~Vk   64 (261)
T TIGR02911         5 PFKSEILEIIKHTDI-----EYTFRMSYD--GPVKPGQFFEVSLPKY-------GEAPISVSGI------GEGYIDLTIR   64 (261)
T ss_pred             CceEEEEEEeeccCC-----EEEEEcCCC--CCCCCCcEEEEEecCC-------CccceecCCC------CCCeEEEEEE
Confidence            457999999999988     888888764  6799999999998753       2589999984      3478999999


Q ss_pred             EeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCC
Q 043022          164 RLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNG  243 (361)
Q Consensus       164 ~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~  243 (361)
                      +           .|.+|.+|+++++||+|.|+||+|+.|.++....++++||||||||||+++|+++++.....    .+
T Consensus        65 ~-----------~G~~S~~L~~l~~Gd~v~i~gP~G~~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~~~~~----~~  129 (261)
T TIGR02911        65 R-----------VGKVTDEVFTLKEGDNLFLRGPYGNGFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVKNPKE----IK  129 (261)
T ss_pred             e-----------CchhhHHHHcCCCCCEEEEecCCCCCcccCccCCceEEEEecccCcHHHHHHHHHHHhCccc----Cc
Confidence            7           48999999999999999999999996665544567999999999999999999988754321    25


Q ss_pred             eEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022          244 LAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG  323 (361)
Q Consensus       244 ~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~  323 (361)
                      +++|+|++|+.++++|.+||++|..+.  ++  ++.++++.+.|.+..+++.+.+.+..   ..  ...+..+|+|||++
T Consensus       130 ~v~L~~~~r~~~~~~~~~eL~~l~~~~--~~--~~~~~~~~~~~~~~~g~v~~~l~~~~---~~--~~~~~~v~lCGp~~  200 (261)
T TIGR02911       130 SLNLILGFKTPDDILFKEDIAEWKGNI--NL--TLTLDEAEEDYKGNIGLVTKYIPELT---LK--DIEEVQAIVVGPPI  200 (261)
T ss_pred             eEEEEEecCCHHHhhHHHHHHHHHhcC--cE--EEEEcCCCCCCcCCeeccCHhHHhcc---CC--CccceEEEEECCHH
Confidence            899999999999999999999998753  44  44455555566677778876554311   01  11367899999999


Q ss_pred             hHHHHHHHHHHHHHcc
Q 043022          324 MEKGIDDIMVSLAAND  339 (361)
Q Consensus       324 m~~~v~~~L~~~g~~~  339 (361)
                      |++++.+.|.+.|...
T Consensus       201 mv~~~~~~L~~~Gv~~  216 (261)
T TIGR02911       201 MMKFTVQELLKKGIKE  216 (261)
T ss_pred             HHHHHHHHHHHcCCCH
Confidence            9999999999987764

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=100.00  E-value=1.4e-33  Score=256.49  Aligned_cols=210  Identities=23%  Similarity=0.355  Sum_probs=169.6

Q ss_pred             EEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeE
Q 043022           89 CLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY  167 (361)
Q Consensus        89 v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~  167 (361)
                      |++++.++++     +++|+|+.+. ...|+||||+.|.++..+   .+...|+|||+|.|.    +.+.++|+|+..  
T Consensus         1 V~~~~~~t~~-----v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~---~~~~~R~ySi~s~~~----~~~~l~l~v~~~--   66 (246)
T cd06218           1 VLSNREIADD-----IYRLVLEAPEIAAAAKPGQFVMLRVPDGS---DPLLRRPISIHDVDP----EEGTITLLYKVV--   66 (246)
T ss_pred             CcceeEecCC-----eEEEEEeCcchhccCCCCcEEEEEeCCCC---CCcCCCceEeeeccC----CCCEEEEEEEEE--
Confidence            4678889998     9999999987 567999999999987522   144689999999885    468999999873  


Q ss_pred             ecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022          168 TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL  247 (361)
Q Consensus       168 ~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L  247 (361)
                               |.+|++|+++++|++|.|.||+|+.|.++. ...++|||||||||||+++|++++....       ++++|
T Consensus        67 ---------G~~s~~l~~l~~Gd~v~i~gP~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~~~-------~~v~l  129 (246)
T cd06218          67 ---------GKGTRLLSELKAGDELDVLGPLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAERG-------IKVTV  129 (246)
T ss_pred             ---------CcchHHHhcCCCCCEEEEEecCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHhcC-------CceEE
Confidence                     778999999999999999999998777663 5689999999999999999999887522       68999


Q ss_pred             EEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHH
Q 043022          248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG  327 (361)
Q Consensus       248 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~  327 (361)
                      ||++|+.+|++|.++|++|..    .+  .. .++  +.|.+.++++++.+.+....    .  .+..||+|||+.|+++
T Consensus       130 ~~~~r~~~d~~~~~eL~~l~~----~~--~~-~~~--~~~~~~~g~v~~~l~~~~~~----~--~~~~vyiCGp~~mv~~  194 (246)
T cd06218         130 LLGFRSADDLFLVEEFEALGA----EV--YV-ATD--DGSAGTKGFVTDLLKELLAE----A--RPDVVYACGPEPMLKA  194 (246)
T ss_pred             EEEccchhhhhhHHHHHhhCC----cE--EE-EcC--CCCCCcceehHHHHHHHhhc----c--CCCEEEEECCHHHHHH
Confidence            999999999999999998842    22  22 222  23556778888877654322    1  3689999999999999


Q ss_pred             HHHHHHHHHHccCCCHH
Q 043022          328 IDDIMVSLAANDGIDWL  344 (361)
Q Consensus       328 v~~~L~~~g~~~~~~~~  344 (361)
                      +++.|++.|.+.....+
T Consensus       195 ~~~~L~~~Gv~~~~~~~  211 (246)
T cd06218         195 VAELAAERGVPCQVSLE  211 (246)
T ss_pred             HHHHHHhcCCCEEEEec
Confidence            99999998877543333

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=100.00  E-value=9.9e-33  Score=250.99  Aligned_cols=208  Identities=24%  Similarity=0.379  Sum_probs=178.1

Q ss_pred             eEEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEE
Q 043022           86 IGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR  164 (361)
Q Consensus        86 ~~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~  164 (361)
                      .++|.+++.++++     ++.++|+.+.. +.|+||||+.|.+++.       ..|+||+++.+.    +.+.++|+|+.
T Consensus         9 ~~~I~~~~~is~~-----~~~l~~~~~~~~~~~~pGQfv~l~~~~~-------~~~P~si~~~~~----~~g~~~l~i~~   72 (252)
T COG0543           9 SYKVVEKEEISPD-----TFLLRLRLPFVALTFKPGQFVMLRVPGG-------VRRPYSLASAPD----DKGELELHIRV   72 (252)
T ss_pred             ccEEEEEEEecCc-----eEEEEEeccccccccCCCcEEEEEeCCC-------cEEEeeeccCCC----cCCcEEEEEEE
Confidence            5899999999999     99999998765 6899999999999862       589999999997    57888999988


Q ss_pred             eeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCe
Q 043022          165 LVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL  244 (361)
Q Consensus       165 ~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~  244 (361)
                      .+         .|.+|.+|+.+++||.|.+.||+|+.|..+. ..+++++||||||+||++++++++...+ .    ..+
T Consensus        73 ~~---------~G~~T~~i~~~k~gd~i~v~GP~G~~~~~~~-~~~~vlliagGtG~aPl~~i~~~~~~~~-~----~~~  137 (252)
T COG0543          73 YE---------VGKVTKYIFGLKEGDKIRVRGPLGNGFLREK-IGKPVLLIAGGTGIAPLYAIAKELKEKG-D----ANK  137 (252)
T ss_pred             Ee---------CChHHHHHhhccCCCEEEEEcCCCCCccccc-cCCcEEEEecccCHhHHHHHHHHHHhcC-C----Cce
Confidence            87         8999999999999999999999999888763 4567999999999999999999998754 2    378


Q ss_pred             EEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEe-cchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022          245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYI-QTRMAEYANELWELLKKDNTYVYMCGLRG  323 (361)
Q Consensus       245 i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v-~~~l~~~~~~~~~~l~~~~~~vyvCGp~~  323 (361)
                      ++++||+|+..|+++.+||+++..+     +++++.+   ++|.|.+++| ++.+.+....       +...+|+|||+.
T Consensus       138 V~~~~G~~~~~dl~~~~el~~~~~~-----~~~~~~~---~~~~G~~G~v~~~~~~~~~~~-------~~~~v~~cGp~~  202 (252)
T COG0543         138 VTLLYGARTAKDLLLLDELEELAEK-----EVHPVTD---DGWKGRKGFVTTDVLKELLDL-------EVDDVYICGPPA  202 (252)
T ss_pred             EEEEEeccChhhcccHHHHHHhhcC-----cEEEEEC---CCCCccCcceeHHHHhhhccc-------cCCEEEEECCHH
Confidence            9999999999999999999999763     4445444   6788899999 6655543211       468999999999


Q ss_pred             hHHHHHHHHHHHHHcc
Q 043022          324 MEKGIDDIMVSLAAND  339 (361)
Q Consensus       324 m~~~v~~~L~~~g~~~  339 (361)
                      |++++.+.+.+.+...
T Consensus       203 M~~~v~~~~~~~g~~~  218 (252)
T COG0543         203 MVKAVREKLKEYGVPI  218 (252)
T ss_pred             HHHHHHHHHHhcCCch
Confidence            9999999999987654

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=100.00  E-value=8e-33  Score=246.81  Aligned_cols=198  Identities=21%  Similarity=0.289  Sum_probs=156.6

Q ss_pred             eEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchh
Q 043022          104 TWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNF  182 (361)
Q Consensus       104 ~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~  182 (361)
                      ++.++|+.+.. +.|+||||+.|.++..+    ....|+|||+|.|.    +.+.++|+||.           .|.+|.+
T Consensus         9 ~~~i~l~~~~~~~~~~pGQ~v~l~~~~~~----~~~~r~ySi~s~~~----~~~~l~l~vk~-----------~G~~t~~   69 (216)
T cd06198           9 TTTLTLEPRGPALGHRAGQFAFLRFDASG----WEEPHPFTISSAPD----PDGRLRFTIKA-----------LGDYTRR   69 (216)
T ss_pred             eEEEEEeeCCCCCCcCCCCEEEEEeCCCC----CCCCCCcEEecCCC----CCCeEEEEEEe-----------CChHHHH
Confidence            88999988765 78999999999987532    23689999999986    55799999997           4789999


Q ss_pred             hh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHH
Q 043022          183 LC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKE  261 (361)
Q Consensus       183 L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~  261 (361)
                      |+ ++++|+.|.|+||+|.+.+ +.. .++++||||||||||+++|++++.....     .++++|+|++|+.++++|.+
T Consensus        70 l~~~l~~G~~v~i~gP~G~~~~-~~~-~~~~vlia~GtGiap~~~~l~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~  142 (216)
T cd06198          70 LAERLKPGTRVTVEGPYGRFTF-DDR-RARQIWIAGGIGITPFLALLEALAARGD-----ARPVTLFYCVRDPEDAVFLD  142 (216)
T ss_pred             HHHhCCCCCEEEEECCCCCCcc-ccc-CceEEEEccccCHHHHHHHHHHHHhcCC-----CceEEEEEEECCHHHhhhHH
Confidence            99 6999999999999998544 333 6899999999999999999998876432     36899999999999999999


Q ss_pred             HHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022          262 EFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       262 el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                      +|++|..++  ++++++..++. ..|.+...+    +.    ...  ....+..+|+|||+.|++++++.|.+.|....
T Consensus       143 ~l~~l~~~~--~~~~~~~~~~~-~~~~~~~~~----~~----~~~--~~~~~~~vyicGp~~m~~~v~~~l~~~Gv~~~  208 (216)
T cd06198         143 ELRALAAAA--GVVLHVIDSPS-DGRLTLEQL----VR----ALV--PDLADADVWFCGPPGMADALEKGLRALGVPAR  208 (216)
T ss_pred             HHHHHHHhc--CeEEEEEeCCC-Ccccchhhh----hh----hcC--CCcCCCeEEEECcHHHHHHHHHHHHHcCCChH
Confidence            999998875  78887765543 222211111    10    111  11146789999999999999999999887654

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>PLN02252 nitrate reductase [NADPH]

Probab=100.00  E-value=9.1e-33  Score=287.01  Aligned_cols=239  Identities=19%  Similarity=0.240  Sum_probs=188.5

Q ss_pred             ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCC
Q 043022           79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDS  155 (361)
Q Consensus        79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~  155 (361)
                      ..|.++..++|++++.++++     ++.|+|..+..   +.|.||||+.|.++..+    ....|+|||+|.+.    +.
T Consensus       629 l~p~~~~~~~Lv~k~~lS~d-----~~~f~f~lp~~~~~lgl~pGQhV~l~~~~~g----~~~~R~YSpaS~~~----~~  695 (888)
T PLN02252        629 LNPREKIPCRLVEKISLSHD-----VRLFRFALPSEDHVLGLPVGKHVFLCATING----KLCMRAYTPTSSDD----EV  695 (888)
T ss_pred             cccCceEEEEEEEEEEccCC-----eEEEEEEECCCcccCCCCCCCEEEEEEecCC----eEEEeeeEecccCC----CC
Confidence            35677889999999999999     99999998753   57999999999975322    22579999999986    56


Q ss_pred             cEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcC-------CCC--CCCCcEEEEecCCchhhHHH
Q 043022          156 KTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEML-------MPR--DPNATVIMLATGTGIAPFRG  226 (361)
Q Consensus       156 ~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~-------~~~--~~~~~iv~Ia~GtGiaP~~~  226 (361)
                      +.|+|+||++........+.+|.+|++|+++++|+.|.|+||+|.+.+       ++.  ...++++||||||||||+++
T Consensus       696 g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V~GP~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~s  775 (888)
T PLN02252        696 GHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDVKGPLGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQ  775 (888)
T ss_pred             CEEEEEEEEEeccccCccCCCCchhhHHhcCCCCCEEEEecCccceeecccceeeeccccccCceEEEEecceehhHHHH
Confidence            899999998721000111236999999999999999999999998532       221  13479999999999999999


Q ss_pred             HHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCc-ccCCCCeeEecchHHHhHHHH
Q 043022          227 FLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ-KNEKGEKMYIQTRMAEYANEL  305 (361)
Q Consensus       227 ~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~-~~~~g~~~~v~~~l~~~~~~~  305 (361)
                      ||++++....+    ..++.|||++|+.+|++|.+||++|+++++.+|+++++++++. +.|.+.+++|.+.+.+.   +
T Consensus       776 ilr~ll~~~~d----~t~i~Liyg~Rt~~Dil~~eEL~~la~~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll~~---~  848 (888)
T PLN02252        776 VIQAILRDPED----KTEMSLVYANRTEDDILLREELDRWAAEHPDRLKVWYVVSQVKREGWKYSVGRVTEAMLRE---H  848 (888)
T ss_pred             HHHHHHhccCC----CCcEEEEEEECCHHHhhHHHHHHHHHHhCCCCEEEEEEecCCCcCCCCCcCCcCCHHHHHH---h
Confidence            99998764322    3689999999999999999999999998866999999999864 67888888887754331   1


Q ss_pred             HHHhccCCeEEEEECCcchHH-HHHHHHHHHHHc
Q 043022          306 WELLKKDNTYVYMCGLRGMEK-GIDDIMVSLAAN  338 (361)
Q Consensus       306 ~~~l~~~~~~vyvCGp~~m~~-~v~~~L~~~g~~  338 (361)
                      ..... ++..+|+|||++|++ ++...|+++|..
T Consensus       849 l~~~~-~~~~vyiCGPp~Mi~~av~~~L~~~G~~  881 (888)
T PLN02252        849 LPEGG-DETLALMCGPPPMIEFACQPNLEKMGYD  881 (888)
T ss_pred             cccCC-CCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence            11111 367899999999999 588899888765

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=100.00  E-value=1.9e-32  Score=249.77  Aligned_cols=211  Identities=22%  Similarity=0.339  Sum_probs=170.7

Q ss_pred             CCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022           83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV  162 (361)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V  162 (361)
                      ++..++|++++.++++     ++.++|+.+..+.|+||||+.|.++..+    +...|+|||+|.|      ++.++|+|
T Consensus         3 ~~~~~~V~~~~~~t~d-----~~~l~l~~~~~~~~~pGQ~v~l~~~~~~----~~~~r~ySi~s~~------~~~l~l~V   67 (250)
T PRK00054          3 KPENMKIVENKEIAPN-----IYTLVLDGEKVFDMKPGQFVMVWVPGVE----PLLERPISISDID------KNEITILY   67 (250)
T ss_pred             CceEEEEEEEEEecCC-----eEEEEEeCccccCCCCCcEEEEEeCCCC----CcCceeeEEeeeC------CCEEEEEE
Confidence            3667999999999999     9999999876778999999999987542    3458999999986      36899999


Q ss_pred             EEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccC
Q 043022          163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN  242 (361)
Q Consensus       163 ~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~  242 (361)
                      +.           .|.+|.+|+.+++|++|.|.||+|+.|.++. ..+++|||||||||||++++++++...+       
T Consensus        68 k~-----------~G~~t~~l~~l~~G~~v~i~gP~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~~~-------  128 (250)
T PRK00054         68 RK-----------VGEGTKKLSKLKEGDELDIRGPLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKKKG-------  128 (250)
T ss_pred             EE-----------cChHHHHHhcCCCCCEEEEEcccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHHcC-------
Confidence            97           4889999999999999999999998776653 5579999999999999999999887543       


Q ss_pred             CeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc
Q 043022          243 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR  322 (361)
Q Consensus       243 ~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~  322 (361)
                      .+++|+|++|+.+|++|.++|+++.     .+.  +. +  ++.|.+.++++++.+.+..       . +...||+|||+
T Consensus       129 ~~v~l~~~~r~~~d~~~~~el~~~~-----~~~--~~-~--~~~~~~~~g~v~~~l~~~~-------~-~~~~vyvCGp~  190 (250)
T PRK00054        129 VEVTTVLGARTKDEVIFEEEFAKVG-----DVY--VT-T--DDGSYGFKGFVTDVLDELD-------S-EYDAIYSCGPE  190 (250)
T ss_pred             CcEEEEEEcCCHHHhhhHHHHHhcC-----CEE--EE-e--cCCCCCcccchhHhHhhhc-------c-CCCEEEEeCCH
Confidence            4789999999999999999999842     221  11 2  2345567788887665421       1 35689999999


Q ss_pred             chHHHHHHHHHHHHHccCCCHHH
Q 043022          323 GMEKGIDDIMVSLAANDGIDWLD  345 (361)
Q Consensus       323 ~m~~~v~~~L~~~g~~~~~~~~~  345 (361)
                      .|++++.+.|.+.|.+..+..|+
T Consensus       191 ~m~~~v~~~l~~~Gv~~~~~~e~  213 (250)
T PRK00054        191 IMMKKVVEILKEKKVPAYVSLER  213 (250)
T ss_pred             HHHHHHHHHHHHcCCcEEEEEcc
Confidence            99999999999988754444443

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=100.00  E-value=3.5e-32  Score=251.74  Aligned_cols=203  Identities=18%  Similarity=0.236  Sum_probs=164.0

Q ss_pred             EEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022           87 GRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL  165 (361)
Q Consensus        87 ~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~  165 (361)
                      ++|+++++++++     ++.++|..+. ...|+||||+.|.++...      ..|+|||+|.+.    +.+.++|+|++ 
T Consensus         2 ~~I~~~~~~t~~-----~~~l~l~~~~~~~~~~pGQfv~l~~~~~~------~~rpySias~~~----~~~~i~l~vk~-   65 (281)
T PRK06222          2 YKILEKEELAPN-----VFLMEIEAPRVAKKAKPGQFVIVRIDEKG------ERIPLTIADYDR----EKGTITIVFQA-   65 (281)
T ss_pred             cEEEEEEEecCC-----EEEEEEeCchhhccCCCCeEEEEEeCCCC------CceeeEeeEEcC----CCCEEEEEEEe-
Confidence            578999999999     9999999876 356999999999986321      368999999875    56899999997 


Q ss_pred             eEecCCCceecCccchhhhcCCCCCEE-EEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCe
Q 043022          166 VYTNENGEIVKGVCSNFLCDLKPGAEV-KITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL  244 (361)
Q Consensus       166 ~~~~~~~~~~~G~~S~~L~~l~~G~~v-~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~  244 (361)
                                .|.+|.+|+++++|++| .|.||+|++|..+  ..++++|||||+||||++++++++...+       .+
T Consensus        66 ----------~G~~T~~L~~l~~Gd~v~~i~GP~G~~~~~~--~~~~~llIaGGiGiaPl~~l~~~l~~~~-------~~  126 (281)
T PRK06222         66 ----------VGKSTRKLAELKEGDSILDVVGPLGKPSEIE--KFGTVVCVGGGVGIAPVYPIAKALKEAG-------NK  126 (281)
T ss_pred             ----------CCcHHHHHhcCCCCCEEeeEEcCCCCCcccC--CCCeEEEEeCcCcHHHHHHHHHHHHHCC-------Ce
Confidence                      48999999999999999 6999999987653  3479999999999999999999876533       47


Q ss_pred             EEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcch
Q 043022          245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGM  324 (361)
Q Consensus       245 i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m  324 (361)
                      ++|+|++|+.+|++|.+||+++..+    +  ++ .+  ++.|.|.+++|.+.+.+...    ... ....||+|||+.|
T Consensus       127 v~l~~g~r~~~d~~~~~el~~~~~~----~--~v-~~--~d~~~g~~G~v~~~l~~~~~----~~~-~~~~vy~CGP~~M  192 (281)
T PRK06222        127 VITIIGARNKDLLILEDEMKAVSDE----L--YV-TT--DDGSYGRKGFVTDVLKELLE----SGK-KVDRVVAIGPVIM  192 (281)
T ss_pred             EEEEEecCCHHHhhcHHHHHhhCCe----E--EE-Ec--CCCCcCcccchHHHHHHHhh----cCC-CCcEEEEECCHHH
Confidence            9999999999999999999987542    2  22 22  23566778888776654321    111 1457999999999


Q ss_pred             HHHHHHHHHHHHHc
Q 043022          325 EKGIDDIMVSLAAN  338 (361)
Q Consensus       325 ~~~v~~~L~~~g~~  338 (361)
                      ++++.+.+.+.|..
T Consensus       193 ~~~v~~~l~~~gv~  206 (281)
T PRK06222        193 MKFVAELTKPYGIK  206 (281)
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999888764

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=100.00  E-value=3.4e-32  Score=247.67  Aligned_cols=203  Identities=19%  Similarity=0.246  Sum_probs=162.9

Q ss_pred             EEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEee
Q 043022           88 RCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLV  166 (361)
Q Consensus        88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~  166 (361)
                      +|+++++++++     ++.++|+.+.. ..|+||||+.|.++...      ..|+|||+|.|.    +.+.++|+|+.  
T Consensus         2 ~v~~~~~~t~d-----~~~~~l~~~~~~~~~~pGQf~~l~~~~~~------~~~pySi~s~~~----~~~~~~~~vk~--   64 (248)
T cd06219           2 KILEKEELAPN-----VKLFEIEAPLIAKKAKPGQFVIVRADEKG------ERIPLTIADWDP----EKGTITIVVQV--   64 (248)
T ss_pred             EEEEEEEeCCC-----eEEEEEEChhhhccCCCCcEEEEEcCCCC------CccceEeEEEcC----CCCEEEEEEEe--
Confidence            68899999999     99999998763 57999999999975321      468999999875    56899999987  


Q ss_pred             EecCCCceecCccchhhhcCCCCCEE-EEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeE
Q 043022          167 YTNENGEIVKGVCSNFLCDLKPGAEV-KITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLA  245 (361)
Q Consensus       167 ~~~~~~~~~~G~~S~~L~~l~~G~~v-~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i  245 (361)
                               .|..|.+|.++++|++| .++||+|.++..+  ..+++|||||||||||+++|++++...+       .++
T Consensus        65 ---------~G~~t~~l~~l~~G~~v~~i~gP~G~~~~~~--~~~~~lliagG~GiaP~~~~l~~~~~~~-------~~v  126 (248)
T cd06219          65 ---------VGKSTRELATLEEGDKIHDVVGPLGKPSEIE--NYGTVVFVGGGVGIAPIYPIAKALKEAG-------NRV  126 (248)
T ss_pred             ---------CCchHHHHHhcCCCCEeeeeecCCCCCeecC--CCCeEEEEeCcccHHHHHHHHHHHHHcC-------CeE
Confidence                     48899999889999999 6999999977653  3579999999999999999999877532       579


Q ss_pred             EEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchH
Q 043022          246 WLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGME  325 (361)
Q Consensus       246 ~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~  325 (361)
                      +|+|++|+.++++|.+||++|.++    .  .+. ++  +.|.+..+++.+.+.+...    ... ....+|+|||+.|+
T Consensus       127 ~l~~~~r~~~~~~~~~el~~l~~~----~--~~~-~~--~~~~~~~g~v~~~l~~~~~----~~~-~~~~vyiCGP~~m~  192 (248)
T cd06219         127 ITIIGARTKDLVILEDEFRAVSDE----L--IIT-TD--DGSYGEKGFVTDPLKELIE----SGE-KVDLVIAIGPPIMM  192 (248)
T ss_pred             EEEEEcCCHHHhhhHHHHHhhcCe----E--EEE-eC--CCCCCccccchHHHHHHHh----ccC-CccEEEEECCHHHH
Confidence            999999999999999999999642    2  222 32  3455677788776654331    111 34579999999999


Q ss_pred             HHHHHHHHHHHHcc
Q 043022          326 KGIDDIMVSLAAND  339 (361)
Q Consensus       326 ~~v~~~L~~~g~~~  339 (361)
                      +++.+.|.+.|...
T Consensus       193 ~~~~~~l~~~Gv~~  206 (248)
T cd06219         193 KAVSELTRPYGIPT  206 (248)
T ss_pred             HHHHHHHHHcCCCE
Confidence            99999998877653

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=100.00  E-value=6.4e-32  Score=240.07  Aligned_cols=197  Identities=18%  Similarity=0.260  Sum_probs=155.6

Q ss_pred             eEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeE
Q 043022           91 LNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY  167 (361)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~  167 (361)
                      +++.++++     +++++|+.+..   ..|+||||+.|.++..       ..|+|||+|.|.    +.+.++|+|+.++ 
T Consensus         2 ~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGQ~~~l~~~~~-------~~r~ySi~s~~~----~~~~l~~~v~~~~-   64 (211)
T cd06185           2 RIRDEAPD-----IRSFELEAPDGAPLPAFEPGAHIDVHLPNG-------LVRQYSLCGDPA----DRDRYRIAVLREP-   64 (211)
T ss_pred             ceEEcCCC-----eEEEEEEeCCCCcCCCCCCCceEEEEcCCC-------CceeeeccCCCC----CCCEEEEEEEecc-
Confidence            56788888     99999999875   3799999999998641       579999999986    4689999999875 


Q ss_pred             ecCCCceecCc-cchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeE
Q 043022          168 TNENGEIVKGV-CSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLA  245 (361)
Q Consensus       168 ~~~~~~~~~G~-~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i  245 (361)
                              .|. +|.||++ +++|++|.|+||+|.+...+  ..+++||||+||||||++++++++....       .++
T Consensus        65 --------~g~~~s~~l~~~~~~Gd~v~i~gP~g~f~~~~--~~~~~v~ia~GtGiap~~~il~~~~~~~-------~~v  127 (211)
T cd06185          65 --------ASRGGSRYMHELLRVGDELEVSAPRNLFPLDE--AARRHLLIAGGIGITPILSMARALAARG-------ADF  127 (211)
T ss_pred             --------CCCchHHHHHhcCCCCCEEEEcCCccCCcCCC--CCCcEEEEeccchHhHHHHHHHHHHhCC-------CCE
Confidence                    444 8999986 89999999999999765433  3579999999999999999999887532       579


Q ss_pred             EEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchH
Q 043022          246 WLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGME  325 (361)
Q Consensus       246 ~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~  325 (361)
                      +|+|++|+.++++|.++|+++.  .. ++++.+  +++.     .+..+.+        +...+. .+..+|+|||+.|+
T Consensus       128 ~l~~~~r~~~~~~~~~~l~~~~--~~-~~~~~~--~~~~-----~~~~~~~--------~~~~~~-~~~~vyicGp~~m~  188 (211)
T cd06185         128 ELHYAGRSREDAAFLDELAALP--GD-RVHLHF--DDEG-----GRLDLAA--------LLAAPP-AGTHVYVCGPEGMM  188 (211)
T ss_pred             EEEEEeCCCcchhHHHHHhhhc--CC-cEEEEE--CCCC-----CccCHHH--------HhccCC-CCCEEEEECCHHHH
Confidence            9999999999999999999987  23 666553  4321     1122222        222222 36799999999999


Q ss_pred             HHHHHHHHHHHHccC
Q 043022          326 KGIDDIMVSLAANDG  340 (361)
Q Consensus       326 ~~v~~~L~~~g~~~~  340 (361)
                      +++.+.|.+.|...+
T Consensus       189 ~~~~~~l~~~gv~~~  203 (211)
T cd06185         189 DAVRAAAAALGWPEA  203 (211)
T ss_pred             HHHHHHHHHcCCChh
Confidence            999999999888754

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=100.00  E-value=2.4e-31  Score=241.56  Aligned_cols=200  Identities=18%  Similarity=0.236  Sum_probs=159.3

Q ss_pred             EEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeE
Q 043022           89 CLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY  167 (361)
Q Consensus        89 v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~  167 (361)
                      |++++.++++     +++|+|+.+. ...|+||||+.|.++...    ....|+|||+|.+.    +.+.++|+|+.   
T Consensus         1 i~~~~~~t~~-----~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~----~~~~rpySi~s~~~----~~~~l~l~i~~---   64 (243)
T cd06192           1 IVKKEQLEPN-----LVLLTIKAPLAARLFRPGQFVFLRNFESP----GLERIPLSLAGVDP----EEGTISLLVEI---   64 (243)
T ss_pred             CceEEEecCC-----EEEEEEEccchhhcCCCCCeEEEecCCCC----CceeeeeEeeecCC----CCCEEEEEEEE---
Confidence            4678889998     9999999876 467999999999986421    23589999999986    56899999986   


Q ss_pred             ecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022          168 TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL  247 (361)
Q Consensus       168 ~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L  247 (361)
                              .|.+|.||+++++|++|.|.||+|+++..+ +..++++||||||||||+++|++++...+       .+++|
T Consensus        65 --------~G~~t~~l~~~~~G~~l~i~gP~G~~~~~~-~~~~~~lliagGtGiap~~~~l~~~~~~~-------~~v~l  128 (243)
T cd06192          65 --------RGPKTKLIAELKPGEKLDVMGPLGNGFEGP-KKGGTVLLVAGGIGLAPLLPIAKKLAANG-------NKVTV  128 (243)
T ss_pred             --------cCchHHHHHhCCCCCEEEEEccCCCCCccC-CCCCEEEEEeCcccHHHHHHHHHHHHHCC-------CeEEE
Confidence                    488999999999999999999999877654 34579999999999999999999987542       58999


Q ss_pred             EEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHH
Q 043022          248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG  327 (361)
Q Consensus       248 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~  327 (361)
                      +|++|+.+|+++.+||+++.     .+.+  .+++  +.|.+..+++++....     .. .. +...+|+|||+.|+++
T Consensus       129 ~~~~r~~~d~~~~~el~~~~-----~~~~--~~~~--~~~~~~~g~v~~~~~~-----~~-~~-~~~~v~icGp~~mv~~  192 (243)
T cd06192         129 LAGAKKAKEEFLDEYFELPA-----DVEI--WTTD--DGELGLEGKVTDSDKP-----IP-LE-DVDRIIVAGSDIMMKA  192 (243)
T ss_pred             EEecCcHHHHHHHHHHHhhc-----CeEE--EEec--CCCCccceeechhhhh-----hh-cc-cCCEEEEECCHHHHHH
Confidence            99999999999999998772     2222  2232  3455666777654111     11 11 3568999999999999


Q ss_pred             HHHHHHHHH
Q 043022          328 IDDIMVSLA  336 (361)
Q Consensus       328 v~~~L~~~g  336 (361)
                      +++.|++.|
T Consensus       193 ~~~~l~~~g  201 (243)
T cd06192         193 VVEALDEWL  201 (243)
T ss_pred             HHHHHHhhc
Confidence            999999986

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=99.98  E-value=1.4e-31  Score=241.56  Aligned_cols=200  Identities=23%  Similarity=0.317  Sum_probs=162.2

Q ss_pred             EEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeE
Q 043022           88 RCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY  167 (361)
Q Consensus        88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~  167 (361)
                      +|++++.++++     +++++|+.+  .+|+||||+.|.+++.       ..|+|||+|.|       +.++|+|++   
T Consensus         2 ~v~~~~~~t~~-----~~~~~l~~~--~~~~pGQ~v~l~~~~~-------~~~~~Si~s~~-------~~l~~~v~~---   57 (233)
T cd06220           2 TIKEVIDETPT-----VKTFVFDWD--FDFKPGQFVMVWVPGV-------DEIPMSLSYID-------GPNSITVKK---   57 (233)
T ss_pred             EEEEEEEEcCC-----EEEEEEecC--CCCCCCceEEEEeCCC-------CcceeEEecCC-------CeEEEEEEe---
Confidence            68899999999     999999874  4899999999998643       25899999985       589999987   


Q ss_pred             ecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEE
Q 043022          168 TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWL  247 (361)
Q Consensus       168 ~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L  247 (361)
                              .|.+|+||+++++||.|.|.||+|+.|.++   .+++|||||||||||+++++++++..        ++++|
T Consensus        58 --------~G~~s~~L~~l~~Gd~v~i~gP~G~~f~~~---~~~~vliAgGtGitP~~sil~~~~~~--------~~i~l  118 (233)
T cd06220          58 --------VGEATSALHDLKEGDKLGIRGPYGNGFELV---GGKVLLIGGGIGIAPLAPLAERLKKA--------ADVTV  118 (233)
T ss_pred             --------cChHHHHHHhcCCCCEEEEECcCCCCccCC---CCeEEEEecCcChHHHHHHHHHHHhc--------CCEEE
Confidence                    489999999999999999999999866553   57999999999999999999988743        47999


Q ss_pred             EEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHH
Q 043022          248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG  327 (361)
Q Consensus       248 ~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~  327 (361)
                      +|++|+.+|++|.+||+++    . .+.+  ...   +.|.+..+++++.+.+..      .. ....+|+|||++|+++
T Consensus       119 ~~~~r~~~d~~~~~eL~~~----~-~~~~--~~~---~~~~~~~g~~~~~l~~~~------~~-~~~~vyicGp~~m~~~  181 (233)
T cd06220         119 LLGARTKEELLFLDRLRKS----D-ELIV--TTD---DGSYGFKGFVTDLLKELD------LE-EYDAIYVCGPEIMMYK  181 (233)
T ss_pred             EEecCChHHChhHHHHhhC----C-cEEE--EEe---CCCCcccceehHHHhhhc------cc-CCCEEEEECCHHHHHH
Confidence            9999999999999999872    2 3332  221   245556778877655422      12 3568999999999999


Q ss_pred             HHHHHHHHHHccCCCHHHHH
Q 043022          328 IDDIMVSLAANDGIDWLDYK  347 (361)
Q Consensus       328 v~~~L~~~g~~~~~~~~~~~  347 (361)
                      +.+.|.+.|....+..|.|+
T Consensus       182 ~~~~L~~~g~~~~i~~e~f~  201 (233)
T cd06220         182 VLEILDERGVRAQFSLERYM  201 (233)
T ss_pred             HHHHHHhcCCcEEEEecccc
Confidence            99999998886556666654

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.98  E-value=6.7e-32  Score=237.12  Aligned_cols=266  Identities=23%  Similarity=0.375  Sum_probs=210.1

Q ss_pred             cceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcE
Q 043022           45 GGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQS  122 (361)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~  122 (361)
                      -+++.++.||..-..+...|.   +  +     .+--.....++|+++.....-     +..+.+..|.  .++|+||-|
T Consensus       105 a~eG~RLsCQ~~Vk~dm~lev---p--E-----e~fgvkkWectViSNdN~ATF-----IKEL~laip~g~~vpFraGGy  169 (410)
T COG2871         105 AKEGWRLSCQVNVKHDMDLEV---P--E-----EVFGVKKWECTVISNDNKATF-----IKELKLAIPEGEEVPFRAGGY  169 (410)
T ss_pred             hhccceEEEEecccccceeec---h--H-----HhcCccceeEEEEeCCchhhh-----hhhheeeCCCCCccccCCCce
Confidence            456888999887666655532   1  1     112234678999999988877     7788887765  689999999


Q ss_pred             EEEecCCCC--------------------------CCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC-CCcee
Q 043022          123 IGVIADGVD--------------------------KNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE-NGEIV  175 (361)
Q Consensus       123 v~l~~~~~~--------------------------~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~-~~~~~  175 (361)
                      +++..|.-.                          ...++ ..|.||+||-|.    +-+.|-|-||..- +++ ....+
T Consensus       170 iQie~pph~v~y~Dfdi~~eY~~DWdkf~lf~~vs~v~e~-~~rAYSmAsYPe----E~giI~~NvRIAt-PPp~~~~~P  243 (410)
T COG2871         170 IQIEAPPHTVNYKDFDIPPEYHEDWDKFNLFRYVSKVDEP-IIRAYSMASYPE----EKGIIKLNVRIAT-PPPRNPDAP  243 (410)
T ss_pred             EEEecCCccccccccCCChhHhcchhhhchheeeccccHH-HHHHhhhhcChh----hcCeEEEEEEecc-CCCCCCCCC
Confidence            999976321                          00122 469999999998    7889999998753 222 23567


Q ss_pred             cCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCc
Q 043022          176 KGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSS  255 (361)
Q Consensus       176 ~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~  255 (361)
                      .|.+|.|+..|++||+|.|+||+|.+|..  +.++++|||+||.|.||+++-|-+.+.+.+.    .+++.+.||+|+..
T Consensus       244 pG~mSSyi~sLKpGDKvtisGPfGEfFaK--dtdaemvFigGGAGmapmRSHIfDqL~rlhS----kRkis~WYGARS~r  317 (410)
T COG2871         244 PGQMSSYIWSLKPGDKVTISGPFGEFFAK--DTDAEMVFIGGGAGMAPMRSHIFDQLKRLHS----KRKISFWYGARSLR  317 (410)
T ss_pred             ccceeeeEEeecCCCeEEEeccchhhhhc--cCCCceEEEecCcCcCchHHHHHHHHHhhcc----cceeeeeeccchHH
Confidence            89999999999999999999999998765  5668999999999999999988554443332    38999999999999


Q ss_pred             ccccHHHHHHHHHhCCCceEEEEEecCC--cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHH
Q 043022          256 SLLYKEEFEKMKEKAPENFRLDFAVSRE--QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMV  333 (361)
Q Consensus       256 d~~~~~el~~l~~~~~~~~~~~~~~s~~--~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~  333 (361)
                      +.+|.+++++|+++.+ ||++|+++|++  +++|.+..++++..+-+.  .+.+.-.++++.+|+||||-|..+|.+.|.
T Consensus       318 E~fY~Ed~d~L~ae~p-NF~wH~aLSdplpEDnW~g~TgFihnv~~en--~Lk~h~aPEDceyYmCGPp~mNasvikmL~  394 (410)
T COG2871         318 EMFYQEDFDQLQAENP-NFHWHLALSDPLPEDNWDGYTGFIHNVLYEN--YLKDHEAPEDCEYYMCGPPLMNASVIKMLK  394 (410)
T ss_pred             HhHHHHHHHHHHhhCC-CcEEEEEecCCCCcCCcccchhHHHHHHHhh--hhhcCCCchheeEEeeCcchhhHHHHHHHH
Confidence            9999999999999999 99999999987  568999888888877552  232333346899999999999999999999


Q ss_pred             HHHHccC
Q 043022          334 SLAANDG  340 (361)
Q Consensus       334 ~~g~~~~  340 (361)
                      ++|+++.
T Consensus       395 dlGVE~e  401 (410)
T COG2871         395 DLGVERE  401 (410)
T ss_pred             hcCcccc
Confidence            9998865

>PRK05802 hypothetical protein; Provisional

Probab=99.98  E-value=5.3e-31  Score=247.08  Aligned_cols=209  Identities=13%  Similarity=0.130  Sum_probs=159.9

Q ss_pred             CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcE
Q 043022           81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKT  157 (361)
Q Consensus        81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~  157 (361)
                      +.+.+.++|++++.++++     ++.++|+.|..   ..++||||++|.++..+    +...|+|||++.+.    +.+.
T Consensus        61 ~~~~~~~~I~~~~~~t~d-----v~~l~l~~p~~~~~~~~~PGQFv~l~~~~~~----~~~~rP~SI~~~~~----~~g~  127 (320)
T PRK05802         61 GRKTYECKIIKKENIEDN-----LIILTLKVPHKLARDLVYPGSFVFLRNKNSS----SFFDVPISIMEADT----EENI  127 (320)
T ss_pred             ccccEeEEEEEEEEecCC-----EEEEEEECCchhhhccCCCCceEEEEEcCCC----CEeEEeeEecccCC----CCCE
Confidence            456789999999999999     99999998764   34799999999986422    33579999999986    5789


Q ss_pred             EEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCC-cCCC---CCCCCcEEEEecCCchhhHHHHHHHHHh
Q 043022          158 VSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKE-MLMP---RDPNATVIMLATGTGIAPFRGFLWKMFF  233 (361)
Q Consensus       158 l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~-~~~~---~~~~~~iv~Ia~GtGiaP~~~~l~~~~~  233 (361)
                      ++|+|++           .|.+|++|+++++|++|.|.||+|+. |.++   ....+++|+||||+||||+++++++++.
T Consensus       128 l~l~ik~-----------~G~~T~~L~~l~~Gd~l~v~GP~GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~  196 (320)
T PRK05802        128 IKVAIEI-----------RGVKTKKIAKLNKGDEILLRGPYWNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYS  196 (320)
T ss_pred             EEEEEEe-----------cChhHHHHhcCCCCCEEEEeCCCCcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHH
Confidence            9999998           49999999999999999999999764 3332   2334689999999999999999999875


Q ss_pred             hcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCC
Q 043022          234 EKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDN  313 (361)
Q Consensus       234 ~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~  313 (361)
                      .+       .+++|+||+|+.++++|.++|+++..+.    .+...+......+ +.++++.+.+.+        .  +.
T Consensus       197 ~~-------~~v~li~g~r~~~~~~~~~el~~~~~~~----~~~~~~ddG~~~~-~~~g~v~~~l~~--------~--~~  254 (320)
T PRK05802        197 NG-------NKIIVIIDKGPFKNNFIKEYLELYNIEI----IELNLLDDGELSE-EGKDILKEIIKK--------E--DI  254 (320)
T ss_pred             cC-------CcEEEEEeCCCHHHHHHHHHHHHhhCce----EEEEecccCCCCc-cccchHHHHhcC--------C--CC
Confidence            43       4799999999999999999999986532    2221122111111 122233332221        1  24


Q ss_pred             eEEEEECCcchHHHHHHHHHHH
Q 043022          314 TYVYMCGLRGMEKGIDDIMVSL  335 (361)
Q Consensus       314 ~~vyvCGp~~m~~~v~~~L~~~  335 (361)
                      ..||+|||+.|++++.+.|.++
T Consensus       255 ~~vy~CGP~~M~k~v~~~l~~~  276 (320)
T PRK05802        255 NLIHCGGSDILHYKIIEYLDKL  276 (320)
T ss_pred             CEEEEECCHHHHHHHHHHHhhh
Confidence            6799999999999999999874

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=99.97  E-value=9.8e-31  Score=233.74  Aligned_cols=189  Identities=19%  Similarity=0.280  Sum_probs=142.0

Q ss_pred             eEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCC-------C-----CCCceecccccCCCCCCCCC
Q 043022           91 LNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNA-------K-----PHKLRLYSIASSALGDFGDS  155 (361)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~-------~-----~~~~R~ySias~p~~~~~~~  155 (361)
                      .++.++++     +.+|+|..+..   +.|+|||||.|.++.....+       .     ....|+|||+|.|..+. ..
T Consensus         2 ~~~~~s~~-----v~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~-~~   75 (220)
T cd06197           2 KSEVITPT-----LTRFTFELSPPDVVGKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDP-AT   75 (220)
T ss_pred             cceecccc-----eeEEEEEecCCccccccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCC-CC
Confidence            34567777     99999998776   88999999999986521100       0     12469999999996310 13


Q ss_pred             cEEEEEEEEeeEecCCCceecCccchhhhcC-C-C---CCEEEEEccCCCCcCCCC--CCCCcEEEEecCCchhhHHHHH
Q 043022          156 KTVSLCVKRLVYTNENGEIVKGVCSNFLCDL-K-P---GAEVKITGPVGKEMLMPR--DPNATVIMLATGTGIAPFRGFL  228 (361)
Q Consensus       156 ~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l-~-~---G~~v~i~gP~G~~~~~~~--~~~~~iv~Ia~GtGiaP~~~~l  228 (361)
                      +.++|+||+           .|.+|++|+++ . .   |+.|.+.||+|.+.....  +..+++|||||||||||+++|+
T Consensus        76 ~~l~l~vk~-----------~G~~T~~L~~~~~~~~~~G~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil  144 (220)
T cd06197          76 DEFEITVRK-----------KGPVTGFLFQVARRLREQGLEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAML  144 (220)
T ss_pred             CEEEEEEEe-----------CCCCCHHHHHhhhcccCCCceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHH
Confidence            799999987           48999999884 3 3   999999999998543321  2357899999999999999999


Q ss_pred             HHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHH
Q 043022          229 WKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL  308 (361)
Q Consensus       229 ~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~  308 (361)
                      ++++.....    ..+++|+|++|+.+|++|.+||.++.. .  .+.+....                            
T Consensus       145 ~~l~~~~~~----~~~v~l~~~~r~~~~~~~~~el~~~~~-~--~~~~~~~~----------------------------  189 (220)
T cd06197         145 RAILSSRNT----TWDITLLWSLREDDLPLVMDTLVRFPG-L--PVSTTLFI----------------------------  189 (220)
T ss_pred             HHHHhcccC----CCcEEEEEEecchhhHHHHHHHHhccC-C--ceEEEEEE----------------------------
Confidence            988754321    368999999999999999999977643 1  11221110                            


Q ss_pred             hccCCeEEEEECCcchHHHHHHHHHHH
Q 043022          309 LKKDNTYVYMCGLRGMEKGIDDIMVSL  335 (361)
Q Consensus       309 l~~~~~~vyvCGp~~m~~~v~~~L~~~  335 (361)
                          ...||+|||++|++++.+.+.+.
T Consensus       190 ----~~~v~~CGP~~m~~~~~~~~~~~  212 (220)
T cd06197         190 ----TSEVYLCGPPALEKAVLEWLEGK  212 (220)
T ss_pred             ----eccEEEECcHHHHHHHHHHhhhc
Confidence                11799999999999999988764

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=99.97  E-value=4.6e-30  Score=276.80  Aligned_cols=232  Identities=17%  Similarity=0.237  Sum_probs=184.9

Q ss_pred             ccCCCCeeEEEEeEe---eecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCC
Q 043022           79 FKPKTPYIGRCLLNT---KITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDF  152 (361)
Q Consensus        79 ~~~~~~~~~~v~~~~---~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~  152 (361)
                      ..+.++..++|++++   +++++     ++.++|..|..   +.|.|||||.|.++..   +.. ..|+|||+|.|.   
T Consensus       909 ~~~~~w~~~~l~~~~~~~~~~~~-----~~~~~f~lp~~~~~~~~~pGQfv~l~~~~~---g~~-~~R~YS~~S~p~---  976 (1167)
T PTZ00306        909 LSKDKWTTVVVREVREGGQFGTG-----SRVLRFNLPGALQRSGLTLGQFIAIRGDWD---GQQ-LIGYYSPITLPD---  976 (1167)
T ss_pred             cCCCceEEEEEEEEeccccccCC-----eEEEEEECCCcccccCCCCCeEEEEEeeeC---CeE-EEEEeccCCCCC---
Confidence            356788999999987   45777     99999998753   4699999999997421   112 479999999996   


Q ss_pred             CCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCC---------CcCCCCCCCCcEEEEecCCchhh
Q 043022          153 GDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGK---------EMLMPRDPNATVIMLATGTGIAP  223 (361)
Q Consensus       153 ~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~---------~~~~~~~~~~~iv~Ia~GtGiaP  223 (361)
                       +.+.++|+||. +         .|.+|+||+++++|++|.|+||+|.         .|.++....+++|||||||||||
T Consensus       977 -~~~~i~l~Vr~-~---------~G~~S~~L~~l~~Gd~v~v~gp~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP 1045 (1167)
T PTZ00306        977 -DLGVISILARG-D---------KGTLKEWISALRPGDSVEMKACGGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAP 1045 (1167)
T ss_pred             -CCCeEEEEEEc-C---------CChhHHHHhhCCCCCEEEEeCCcCccccccCccceeeeccCCCceEEEEECCccHhH
Confidence             56789999975 3         6999999999999999999998772         23344345579999999999999


Q ss_pred             HHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHH
Q 043022          224 FRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYAN  303 (361)
Q Consensus       224 ~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~  303 (361)
                      |++|+++++.....+  ...+++|+|++|+.+|++|.+||++|+++++++|+++++++++++.|.+..++|++.+.+.  
T Consensus      1046 ~~sml~~~l~~~~~~--~~~~i~Llyg~r~~~dl~~~~eL~~l~~~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~l~~-- 1121 (1167)
T PTZ00306       1046 MLQIIRAALKKPYVD--SIESIRLIYAAEDVSELTYRELLESYRKENPGKFKCHFVLNNPPEGWTDGVGFVDRALLQS-- 1121 (1167)
T ss_pred             HHHHHHHHHhCcccC--CCceEEEEEEeCCHHHhhHHHHHHHHHHHCCCCEEEEEEECCCCcccCCCCCCCCHHHHHH--
Confidence            999999887643100  1268999999999999999999999999988779999999988777877788887643321  


Q ss_pred             HHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022          304 ELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       304 ~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                       +..... .+..+|+|||+.|++++.+.|.+.|.+.
T Consensus      1122 -~l~~~~-~~~~vyiCGP~~mv~~v~~~L~~~G~~~ 1155 (1167)
T PTZ00306       1122 -ALQPPS-KDLLVAICGPPVMQRAVKADLLALGYNM 1155 (1167)
T ss_pred             -hcCCCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCH
Confidence             111111 3678999999999999999999987764

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=99.97  E-value=8e-30  Score=231.97  Aligned_cols=214  Identities=23%  Similarity=0.318  Sum_probs=171.9

Q ss_pred             CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022           81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL  160 (361)
Q Consensus        81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~  160 (361)
                      ...++.++|+..++.+.+     +..++....++..++||||..+.++...-   ...+||||||++..     .++++|
T Consensus       212 ~s~~y~~~vt~~~r~~~~-----t~eit~~l~~~~~~qaGQFAfLk~~~~~~---~~~~HPFTIa~s~~-----~sel~F  278 (438)
T COG4097         212 RSFPYLGKVTAPQRGNVD-----TLEITIGLQGPWLYQAGQFAFLKIEIEEF---RMRPHPFTIACSHE-----GSELRF  278 (438)
T ss_pred             cccccceEEechhhcCcc-----hheeecccCCcccccCCceEEEEeccccc---cCCCCCeeeeeCCC-----CceEEE
Confidence            456888999999999998     88888888887779999999999876431   33589999999974     458999


Q ss_pred             EEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccc
Q 043022          161 CVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDY  239 (361)
Q Consensus       161 ~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~  239 (361)
                      .||.           -|.+|.-|++ +++|+++.++||||.+....  ....-|+||||+|||||+++++.+.....   
T Consensus       279 sIK~-----------LGD~Tk~l~dnLk~G~k~~vdGPYG~F~~~~--g~~~QVWIAGGIGITPFis~l~~l~~~~s---  342 (438)
T COG4097         279 SIKA-----------LGDFTKTLKDNLKVGTKLEVDGPYGKFDFER--GLNTQVWIAGGIGITPFISMLFTLAERKS---  342 (438)
T ss_pred             Eehh-----------hhhhhHHHHHhccCCceEEEecCcceeeccc--CCcccEEEecCcCcchHHHHHHhhccccc---
Confidence            9998           4999999998 99999999999999865432  22348999999999999999998876332   


Q ss_pred             ccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhcc-CCeEEEE
Q 043022          240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK-DNTYVYM  318 (361)
Q Consensus       240 ~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~-~~~~vyv  318 (361)
                        .++++|||++|+.++..|.+||++++++.+ ++.+|..-|.       .++|+.....+      ...+. ....||+
T Consensus       343 --~~~V~L~Y~~~n~e~~~y~~eLr~~~qkl~-~~~lHiiDSs-------~~g~l~~e~le------r~~~~~~~~sv~f  406 (438)
T COG4097         343 --DPPVHLFYCSRNWEEALYAEELRALAQKLP-NVVLHIIDSS-------KDGYLDQEDLE------RYPDRPRTRSVFF  406 (438)
T ss_pred             --CCceEEEEEecCCchhHHHHHHHHHHhcCC-CeEEEEecCC-------CCCccCHHHhh------ccccccCcceEEE
Confidence              378999999999999999999999999888 8888873333       44454321111      11111 2348999


Q ss_pred             ECCcchHHHHHHHHHHHHHcc
Q 043022          319 CGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       319 CGp~~m~~~v~~~L~~~g~~~  339 (361)
                      |||.+|++.+++.|++.+.+-
T Consensus       407 CGP~~m~dsL~r~l~~~~~~i  427 (438)
T COG4097         407 CGPIKMMDSLRRDLKKQNVPI  427 (438)
T ss_pred             EcCHHHHHHHHHHHHHcCCCH
Confidence            999999999999999987774

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.96  E-value=7.8e-29  Score=260.79  Aligned_cols=224  Identities=16%  Similarity=0.210  Sum_probs=174.7

Q ss_pred             cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022           80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV  158 (361)
Q Consensus        80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l  158 (361)
                      .....+.++|++++.++++     ++.|+|..+.. ..|+||||+.|.+...+      ..|+|||++.+.    +.+.|
T Consensus       644 t~~~~~~~~I~~~~~lt~d-----v~~~~l~~p~~~~~~~PGQFv~L~~~~~g------e~rP~SIas~~~----~~g~i  708 (944)
T PRK12779        644 TELGQIPQTIVGKVQLAGG-----IVEFTVRAPMVARSAQAGQFVRVLPWEKG------ELIPLTLADWDA----EKGTI  708 (944)
T ss_pred             hhccceEEEEEEEEEecCC-----EEEEEEeCCCccccCCCCceEEEEeCCCC------CEEeEEccCCCC----CCCEE
Confidence            3445788999999999999     99999998764 46999999999974322      358999999875    57899


Q ss_pred             EEEEEEeeEecCCCceecCccchhhhcCCCCCEEE-EEccCCCCcCCCC-CCCCcEEEEecCCchhhHHHHHHHHHhhcc
Q 043022          159 SLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVK-ITGPVGKEMLMPR-DPNATVIMLATGTGIAPFRGFLWKMFFEKH  236 (361)
Q Consensus       159 ~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~-i~gP~G~~~~~~~-~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~  236 (361)
                      +|+|+.+           |..|.+|+++++|+.|. |.||+|++|..+. ...+++||||||+||||+++|+++++..+ 
T Consensus       709 ~l~Vk~v-----------G~~T~~L~~lk~Gd~l~~I~GPlG~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~~g-  776 (944)
T PRK12779        709 DLVVQGM-----------GTSSLEINRMAIGDAFSGIAGPLGRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLRLG-  776 (944)
T ss_pred             EEEEEee-----------ccHHHHHhcCCCcCEEeeeecCCCCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHHCC-
Confidence            9999874           88899998999999995 9999999876543 22468999999999999999999887543 


Q ss_pred             cccccCCeEEEEEeccCCcccccHHH---HHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCC
Q 043022          237 EDYKFNGLAWLFLGVPTSSSLLYKEE---FEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDN  313 (361)
Q Consensus       237 ~~~~~~~~i~L~~g~r~~~d~~~~~e---l~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~  313 (361)
                            .+++|+||+|+.+++++.++   |++|++.+++.+++++. +  ++.|.|.+++|++.+.+...+....-....
T Consensus       777 ------~~V~li~G~Rs~edl~~~del~~L~~la~~~~~~~~v~~t-t--ddgs~G~~G~Vt~~l~~ll~~~~~~~~~~~  847 (944)
T PRK12779        777 ------NHVTLISGFRAKEFLFWTGDDERVGKLKAEFGDQLDVIYT-T--NDGSFGVKGFVTGPLEEMLKANQQGKGRTI  847 (944)
T ss_pred             ------CCEEEEEEeCCHHHhhhHHHHHHHHHHHHHcCCCeEEEEE-e--cCCCCCCccccChHHHHHHHhcccccccCC
Confidence                  57999999999999888766   55677777755666554 3  245677889998877654322100000013


Q ss_pred             eEEEEECCcchHHHHHHHHHHHHHcc
Q 043022          314 TYVYMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       314 ~~vyvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                      ..||+|||+.|++++.+.|.+.|.+.
T Consensus       848 ~~Vy~CGP~~Mmkav~~~l~~~Gv~~  873 (944)
T PRK12779        848 AEVIAIGPPLMMRAVSDLTKPYGVKT  873 (944)
T ss_pred             cEEEEECCHHHHHHHHHHHHHcCCCe
Confidence            67999999999999999998887764

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=99.96  E-value=6.8e-29  Score=258.68  Aligned_cols=204  Identities=16%  Similarity=0.214  Sum_probs=166.0

Q ss_pred             EEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022           87 GRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL  165 (361)
Q Consensus        87 ~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~  165 (361)
                      .+|++++.++++     ++.|+|+.|.. ..|+||||+.|.++..+      ..|+|||+|.+.    +.+.++|+|+. 
T Consensus         2 ~~I~~~~~~t~~-----v~~l~l~~p~~~~~~~pGQFv~l~~~~~~------~~rp~Si~~~~~----~~g~i~~~vk~-   65 (752)
T PRK12778          2 NKIVEKEIFSEK-----VFLLEIEAPLIAKSRKPGQFVIVRVGEKG------ERIPLTIADADP----EKGTITLVIQE-   65 (752)
T ss_pred             CEEEEEEEEcCC-----EEEEEEeCCchhccCCCCeeEEEEeCCCC------CeeEEEeeeeCC----CCCEEEEEEEE-
Confidence            468999999999     99999998753 46999999999986432      368999999986    57899999987 


Q ss_pred             eEecCCCceecCccchhhhcCCCCCEE-EEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCe
Q 043022          166 VYTNENGEIVKGVCSNFLCDLKPGAEV-KITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL  244 (361)
Q Consensus       166 ~~~~~~~~~~~G~~S~~L~~l~~G~~v-~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~  244 (361)
                                .|.+|.+|+++++||.| .|.||+|++|..+  ..++++|||||+||||+++++++++..+       .+
T Consensus        66 ----------vG~~T~~L~~l~~Gd~v~~v~GP~G~~~~~~--~~~~~llvaGG~GiaPl~~l~~~l~~~~-------~~  126 (752)
T PRK12778         66 ----------VGLSTTKLCELNEGDYITDVVGPLGNPSEIE--NYGTVVCAGGGVGVAPMLPIVKALKAAG-------NR  126 (752)
T ss_pred             ----------cCchHHHHhcCCCCCEeCeEeCCCCCCccCC--CCCeEEEEECCEeHHHHHHHHHHHHHCC-------Ce
Confidence                      48999999999999999 7999999988754  2479999999999999999999987643       47


Q ss_pred             EEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcch
Q 043022          245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGM  324 (361)
Q Consensus       245 i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m  324 (361)
                      ++||||+|+.++++|.++|++|..+    +  .++ +  ++.|.|.++++++.+.+...    ... +...||+|||+.|
T Consensus       127 v~l~~g~r~~~~l~~~~el~~~~~~----~--~~~-t--~dg~~g~~G~v~~~l~~~~~----~~~-~~~~vy~CGP~~M  192 (752)
T PRK12778        127 VITILGGRSKELIILEDEMRESSDE----V--IIM-T--DDGSYGRKGLVTDGLEEVIK----RET-KVDKVFAIGPAIM  192 (752)
T ss_pred             EEEEeccCCHHHhhhHHHHHhhcCe----E--EEE-E--CCCCCCCcccHHHHHHHHhh----cCC-CCCEEEEECCHHH
Confidence            9999999999999999999988542    2  222 2  34577888898887655331    111 2357999999999


Q ss_pred             HHHHHHHHHHHHHcc
Q 043022          325 EKGIDDIMVSLAAND  339 (361)
Q Consensus       325 ~~~v~~~L~~~g~~~  339 (361)
                      ++++.+.+.+.|...
T Consensus       193 ~~~v~~~l~~~gv~~  207 (752)
T PRK12778        193 MKFVCLLTKKYGIPT  207 (752)
T ss_pred             HHHHHHHHHHcCCCE
Confidence            999999998877653

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=99.96  E-value=2.3e-28  Score=220.80  Aligned_cols=204  Identities=12%  Similarity=0.166  Sum_probs=151.0

Q ss_pred             EEeEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCC---------------CCCCCCceecccccCCCC
Q 043022           89 CLLNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDK---------------NAKPHKLRLYSIASSALG  150 (361)
Q Consensus        89 v~~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~---------------~~~~~~~R~ySias~p~~  150 (361)
                      |+++++++++     +++|+|+.+..   ..|.||||+.|.++..+.               ...+...|+|||++.+. 
T Consensus         1 V~~~~~~s~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~-   74 (235)
T cd06193           1 VVRVERLTPH-----MRRITLGGPDLAGFPSDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDP-   74 (235)
T ss_pred             CceeEecCCC-----EEEEEEecCccccCCCCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcC-
Confidence            4678899998     99999999864   569999999999864321               00123579999999875 


Q ss_pred             CCCCCcEEEEEEEEeeEecCCCceec-CccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHH
Q 043022          151 DFGDSKTVSLCVKRLVYTNENGEIVK-GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLW  229 (361)
Q Consensus       151 ~~~~~~~l~~~V~~~~~~~~~~~~~~-G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~  229 (361)
                         +.++++|.|+.++         . |.+|+||+++++||+|.+.||+|.++..+  ..+++||||+||||||+++|++
T Consensus        75 ---~~~~l~~~v~~~~---------~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~--~~~~~vlia~GtGi~p~~~il~  140 (235)
T cd06193          75 ---EAGELDIDFVLHG---------DEGPASRWAASAQPGDTLGIAGPGGSFLPPP--DADWYLLAGDETALPAIAAILE  140 (235)
T ss_pred             ---CCCEEEEEEEeCC---------CCCchHHHHhhCCCCCEEEEECCCCCCCCCC--CcceEEEEeccchHHHHHHHHH
Confidence               5789999998875         5 89999999999999999999999976643  4578999999999999999999


Q ss_pred             HHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHh
Q 043022          230 KMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELL  309 (361)
Q Consensus       230 ~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l  309 (361)
                      ++...        .+++++|++|+.+|+++.+++       . +++++...+++...  +..+.    +  ....+ ...
T Consensus       141 ~~~~~--------~~~~~~~~~~~~~d~~~l~~~-------~-~~~~~~~~~~~~~~--~~~~~----~--~~~~~-~~~  195 (235)
T cd06193         141 ELPAD--------ARGTALIEVPDAADEQPLPAP-------A-GVEVTWLHRGGAEA--GELAL----L--AVRAL-APP  195 (235)
T ss_pred             hCCCC--------CeEEEEEEECCHHHccccCCC-------C-CcEEEEEeCCCCCc--chhHH----H--HHhcc-cCC
Confidence            77531        479999999998665433322       2 66777665543221  11110    0  01111 111


Q ss_pred             ccCCeEEEEECCcchHHHHHHHHHHH-HHc
Q 043022          310 KKDNTYVYMCGLRGMEKGIDDIMVSL-AAN  338 (361)
Q Consensus       310 ~~~~~~vyvCGp~~m~~~v~~~L~~~-g~~  338 (361)
                       .+...+|+|||++|++++++.|.+. |..
T Consensus       196 -~~~~~vyicGp~~mv~~v~~~l~~~~g~~  224 (235)
T cd06193         196 -AGDGYVWIAGEAGAVRALRRHLREERGVP  224 (235)
T ss_pred             -CCCeEEEEEccHHHHHHHHHHHHHccCCC
Confidence             1467999999999999999999874 665

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide

Probab=99.95  E-value=1.4e-27  Score=212.01  Aligned_cols=179  Identities=18%  Similarity=0.248  Sum_probs=138.7

Q ss_pred             eEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhh
Q 043022          104 TWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFL  183 (361)
Q Consensus       104 ~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L  183 (361)
                      ++.++|..+..+.|.||||+.|.++...   ...+.|+|||+|.+..   +.+.++|+||..          +|.++..+
T Consensus        12 ~~~l~~~~~~~~~~~pGq~v~l~~~~~~---~~~~~hpfsias~~~~---~~~~i~~~vk~~----------~G~~t~~~   75 (210)
T cd06186          12 VIRLTIPKPKPFKWKPGQHVYLNFPSLL---SFWQSHPFTIASSPED---EQDTLSLIIRAK----------KGFTTRLL   75 (210)
T ss_pred             EEEEEEecCCCCccCCCCEEEEEeCCCC---CCcccCCcEeeeCCCC---CCCEEEEEEEec----------CChHHHHH
Confidence            9999999988889999999999998651   1457899999999852   158999999986          48888877


Q ss_pred             hcCC------CCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcc-
Q 043022          184 CDLK------PGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSS-  256 (361)
Q Consensus       184 ~~l~------~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d-  256 (361)
                      ..++      .|+++.++||+|.++. +....+++|||||||||||+++++++++..... .....++.|+|++|+.++ 
T Consensus        76 ~~~~~~~~~~~~~~v~v~GP~G~~~~-~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~-~~~~~~v~l~w~~r~~~~~  153 (210)
T cd06186          76 RKALKSPGGGVSLKVLVEGPYGSSSE-DLLSYDNVLLVAGGSGITFVLPILRDLLRRSSK-TSRTRRVKLVWVVRDREDL  153 (210)
T ss_pred             HHHHhCcCCCceeEEEEECCCCCCcc-ChhhCCeEEEEeccccHhhhHHHHHHHHhhhhc-cCCccEEEEEEEECCHHHh
Confidence            7666      8999999999998762 223567999999999999999999998765321 001368999999999998 


Q ss_pred             cccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHH
Q 043022          257 LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVS  334 (361)
Q Consensus       257 ~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~  334 (361)
                      .+|.++|.+..+... ..++++.+++                                 +|+|||.+|+++++..+.+
T Consensus       154 ~~~~~~l~~~~~~~~-~~~~~i~~T~---------------------------------v~~CGp~~~~~~~~~~~~~  197 (210)
T cd06186         154 EWFLDELRAAQELEV-DGEIEIYVTR---------------------------------VVVCGPPGLVDDVRNAVAK  197 (210)
T ss_pred             HHHHHHHHhhhhccC-CceEEEEEee---------------------------------EEEECchhhccHHHHHHhh
Confidence            489999976111111 1133333332                                 8999999999999988877

ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=99.94  E-value=3e-26  Score=243.26  Aligned_cols=202  Identities=12%  Similarity=0.188  Sum_probs=162.3

Q ss_pred             EEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022           87 GRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL  165 (361)
Q Consensus        87 ~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~  165 (361)
                      .+|++++.++++     ++.++|..|. ...|+|||||.|.++...      ..|+|||++.+.    +.+.|+|.|++ 
T Consensus         2 ~~I~~~~~l~~~-----~~~l~l~ap~~a~~~~PGQFV~l~~~~~~------errplSIa~~~~----~~g~i~l~vk~-   65 (1006)
T PRK12775          2 YSIVRREAFSDT-----TFLWEVEAPDVAASAEPGHFVMLRLYEGA------ERIPLTVADFDR----KKGTITMVVQA-   65 (1006)
T ss_pred             cEEEEEEEecCC-----EEEEEEecCCcccCCCCCeeEEEEeCCCC------eeEEEEecCcCC----CCCEEEEEEEe-
Confidence            478999999998     9999999887 456999999999975321      368999999875    57899999987 


Q ss_pred             eEecCCCceecCccchhhh-cCCCCCEE-EEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCC
Q 043022          166 VYTNENGEIVKGVCSNFLC-DLKPGAEV-KITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNG  243 (361)
Q Consensus       166 ~~~~~~~~~~~G~~S~~L~-~l~~G~~v-~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~  243 (361)
                                .|.+|.+|+ ++++||.| .+.||+|.+|...  ..+++||||||+||||+++|++++...+       .
T Consensus        66 ----------vG~~T~~L~~~lk~Gd~l~~v~GPlG~~~~~~--~~~~vllVaGGiGIAPl~s~~r~l~~~g-------~  126 (1006)
T PRK12775         66 ----------LGKTTREMMTKFKAGDTFEDFVGPLGLPQHID--KAGHVVLVGGGLGVAPVYPQLRAFKEAG-------A  126 (1006)
T ss_pred             ----------cCcHHHHHHhcCCCCCEEeeeecCCCCCCCCC--CCCeEEEEEEhHHHHHHHHHHHHHHhCC-------C
Confidence                      489999996 69999999 7999999877653  2468999999999999999999887543       4


Q ss_pred             eEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022          244 LAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG  323 (361)
Q Consensus       244 ~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~  323 (361)
                      +++++||+|+.++++|.+||+++..    .+.+  + +  ++.|.|.+++|++.+.+...+      .....+|+|||+.
T Consensus       127 ~v~li~g~R~~~~l~~~del~~~~~----~~~v--~-t--ddgs~G~~G~vt~~l~~~l~~------~~~d~vy~CGP~~  191 (1006)
T PRK12775        127 RTTGIIGFRNKDLVFWEDKFGKYCD----DLIV--C-T--DDGSYGKPGFVTAALKEVCEK------DKPDLVVAIGPLP  191 (1006)
T ss_pred             cEEEEEeCCChHHcccHHHHHhhcC----cEEE--E-E--CCCCCCCCCChHHHHHHHhcc------CCCCEEEEECCHH
Confidence            6999999999999999999987743    3322  1 2  245677888888777653311      1235799999999


Q ss_pred             hHHHHHHHHHHHHHc
Q 043022          324 MEKGIDDIMVSLAAN  338 (361)
Q Consensus       324 m~~~v~~~L~~~g~~  338 (361)
                      |++++.+.+++.|.+
T Consensus       192 Mm~av~~~~~~~gi~  206 (1006)
T PRK12775        192 MMNACVETTRPFGVK  206 (1006)
T ss_pred             HHHHHHHHHHHCCCc
Confidence            999999999887663

>PLN02292 ferric-chelate reductase

Probab=99.92  E-value=9.5e-24  Score=213.58  Aligned_cols=208  Identities=17%  Similarity=0.207  Sum_probs=151.6

Q ss_pred             eeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEE
Q 043022           85 YIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR  164 (361)
Q Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~  164 (361)
                      ..+++++++.++++     +.+++++.+..+.|+||||+.+.++..+    ..+.|+|||+|+|..   +++.++|+||.
T Consensus       325 ~~~~Iv~~~~l~~d-----vv~L~~~~~~~~~~~PGQ~vfL~~P~~s----~~q~HPFTIaSsp~~---~~~~l~l~IK~  392 (702)
T PLN02292        325 NNVKLVSARVLPCD-----TVELNFSKNPMLMYSPTSIMFVNIPSIS----KLQWHPFTITSSSKL---EPEKLSVMIKS  392 (702)
T ss_pred             cceEEEEEEEcCCC-----EEEEEEEcCCCCCcCCCCeEEEEEccCC----ccceeeeEeeccCCC---CCCEEEEEEEc
Confidence            35678888888887     9999999888889999999999997643    457999999999843   46789999996


Q ss_pred             eeEecCCCceecCccchhhhc-CCCCC-----EEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccc
Q 043022          165 LVYTNENGEIVKGVCSNFLCD-LKPGA-----EVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED  238 (361)
Q Consensus       165 ~~~~~~~~~~~~G~~S~~L~~-l~~G~-----~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~  238 (361)
                                 .|.+|++|++ ++.|+     +|.++||+|.++.. ....++++|||||+||||++++++++.++....
T Consensus       393 -----------~G~~T~~L~~~l~~gd~i~~~~V~VeGPYG~~~~~-~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~  460 (702)
T PLN02292        393 -----------QGKWSTKLYHMLSSSDQIDRLAVSVEGPYGPASTD-FLRHESLVMVSGGSGITPFISIIRDLIYTSSTE  460 (702)
T ss_pred             -----------CCchhHHHHHhCCCCCccccceEEEECCccCCccc-cccCCcEEEEEeccCHHHHHHHHHHHHhccccc
Confidence                       5889999987 78888     46799999986532 234579999999999999999999987653221


Q ss_pred             cccCCeEEEEEeccCCcccccHHHHHH-------HHHhCCCceEEEEEecCCcccCC-CCeeEecchHHHhHHHHHH-Hh
Q 043022          239 YKFNGLAWLFLGVPTSSSLLYKEEFEK-------MKEKAPENFRLDFAVSREQKNEK-GEKMYIQTRMAEYANELWE-LL  309 (361)
Q Consensus       239 ~~~~~~i~L~~g~r~~~d~~~~~el~~-------l~~~~~~~~~~~~~~s~~~~~~~-g~~~~v~~~l~~~~~~~~~-~l  309 (361)
                      ....+++.|+|++|+.+|+++.+++..       +++++  ++++...++++.+... +..+  .   .+..++.+. .-
T Consensus       461 ~~~~~~V~LIw~vR~~~Dl~~ld~l~~e~~~~~~l~~~~--~~~i~iyvTr~~~~~~~~~~~--~---~~~~~~~~~~p~  533 (702)
T PLN02292        461 TCKIPKITLICAFKNSSDLSMLDLILPTSGLETELSSFI--DIQIKAFVTREKEAGVKESTG--N---MNIIKTLWFKPN  533 (702)
T ss_pred             cCCCCcEEEEEEECCHHHhhHHHHHHHhhhhHHHHhhcC--CceEEEEEeCCCCCCCccccc--c---hhhhhhhcCCCC
Confidence            111268999999999999988776543       22333  7888888888754321 1111  1   111111111 11


Q ss_pred             ccCCeEEEEECCcc
Q 043022          310 KKDNTYVYMCGLRG  323 (361)
Q Consensus       310 ~~~~~~vyvCGp~~  323 (361)
                      ..+...+.+|||+.
T Consensus       534 ~~~~~~~~~~Gp~~  547 (702)
T PLN02292        534 LSDQPISPILGPNS  547 (702)
T ss_pred             CCCCceEEEeCCCc
Confidence            12577899999985

>PLN02631 ferric-chelate reductase

Probab=99.90  E-value=1.1e-22  Score=205.58  Aligned_cols=172  Identities=19%  Similarity=0.313  Sum_probs=136.5

Q ss_pred             EEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEee
Q 043022           87 GRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLV  166 (361)
Q Consensus        87 ~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~  166 (361)
                      +++++.+.+.++     +.++++..+..+.|+||||+.|.++...    ..+.|+|||+|.|..   +++.++|+||.  
T Consensus       310 ~~lv~~~~l~~d-----~l~l~~~~~~~~~~~PGQfvfL~~p~~s----~~q~HPFSIaSsp~~---~~~~L~~~IK~--  375 (699)
T PLN02631        310 SRLVSARILPSD-----NLELTFSKTPGLHYTPTSILFLHVPSIS----KLQWHPFTITSSSNL---EKDTLSVVIRR--  375 (699)
T ss_pred             EEEEEEEEeCCC-----eEEEEEEcCCCCcCCCCceEEEEeccCC----ccceEEEEEeccCCC---CCCEEEEEEEc--
Confidence            567777777666     8999998777789999999999998643    457899999999853   46789999997  


Q ss_pred             EecCCCceecCccchhhhc-CCC-CC--EEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccC
Q 043022          167 YTNENGEIVKGVCSNFLCD-LKP-GA--EVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN  242 (361)
Q Consensus       167 ~~~~~~~~~~G~~S~~L~~-l~~-G~--~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~  242 (361)
                               .|.+|++|++ ++. |+  +|.++||||.+. .+....+++||||||+||||+++++++++.+........
T Consensus       376 ---------~Gg~T~~L~~~l~~~g~~i~V~VeGPYG~~~-~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~  445 (699)
T PLN02631        376 ---------QGSWTQKLYTHLSSSIDSLEVSTEGPYGPNS-FDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKL  445 (699)
T ss_pred             ---------CChHHHHHHHhhhcCCCeeEEEEECCCCCCC-CCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCC
Confidence                     5889999987 654 45  688999999643 233455789999999999999999999886543222223


Q ss_pred             CeEEEEEeccCCcccccHHHHHHH------HHhCCCceEEEEEecCCc
Q 043022          243 GLAWLFLGVPTSSSLLYKEEFEKM------KEKAPENFRLDFAVSREQ  284 (361)
Q Consensus       243 ~~i~L~~g~r~~~d~~~~~el~~l------~~~~~~~~~~~~~~s~~~  284 (361)
                      +++.|+|++|+.+|++|.|||..+      .++ . +++++.++||++
T Consensus       446 ~~V~Li~~vR~~~dL~f~deL~~l~~~~~~l~~-~-ni~i~iyVTR~~  491 (699)
T PLN02631        446 PDVLLVCSFKHYHDLAFLDLIFPLDISVSDISR-L-NLRIEAYITRED  491 (699)
T ss_pred             CcEEEEEEECCHHHhhhHHHHhhhccchhhhhc-C-ceEEEEEEcCCC
Confidence            589999999999999999999863      223 3 899999999963

>PLN02844 oxidoreductase/ferric-chelate reductase

Probab=99.89  E-value=4.9e-22  Score=201.72  Aligned_cols=203  Identities=20%  Similarity=0.276  Sum_probs=144.6

Q ss_pred             EEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEe
Q 043022           89 CLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT  168 (361)
Q Consensus        89 v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~  168 (361)
                      +++.+....+     +.++++..+..+.|+||||+.+.++..+    +.+.|+|||+|.|..   +++.++|+||..   
T Consensus       316 vvs~~~~~~~-----~v~l~i~r~~~~~f~PGQfV~L~vp~~s----~~q~HPFSIaS~p~~---~~~~l~~~IK~~---  380 (722)
T PLN02844        316 ILSARLFPCK-----AIELVLPKDPGLKYAPTSVIFMKIPSIS----RFQWHPFSITSSSNI---DDHTMSVIIKCE---  380 (722)
T ss_pred             EEEEEEecCC-----EEEEEEECCCCCCcCCCeeEEEEECCCC----ceeEEEEEeecCCCC---CCCeEEEEEEeC---
Confidence            3444444444     8888888887889999999999998654    457999999998753   567899999873   


Q ss_pred             cCCCceecCccchhhhc-----CCCC------CEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022          169 NENGEIVKGVCSNFLCD-----LKPG------AEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE  237 (361)
Q Consensus       169 ~~~~~~~~G~~S~~L~~-----l~~G------~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~  237 (361)
                              |..|+.|.+     +++|      .++.++||||.+. .+....++++|||||+||||++++++++...+..
T Consensus       381 --------gG~T~~L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s-~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~  451 (722)
T PLN02844        381 --------GGWTNSLYNKIQAELDSETNQMNCIPVAIEGPYGPAS-VDFLRYDSLLLVAGGIGITPFLSILKEIASQSSS  451 (722)
T ss_pred             --------CCchHHHHHHHHhhccCCCCcccceEEEEECCccCCC-CCccCCCeEEEEEcCcCHHHHHHHHHHHHhcccc
Confidence                    556666654     2334      3799999999753 2323457999999999999999999998864332


Q ss_pred             ccccCCeEEEEEeccCCcccccHHHHHHH-----HHhCCCceEEEEEecCCcccCCCCeeEecchHHH--hHHHHHHHhc
Q 043022          238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKM-----KEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAE--YANELWELLK  310 (361)
Q Consensus       238 ~~~~~~~i~L~~g~r~~~d~~~~~el~~l-----~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~--~~~~~~~~l~  310 (361)
                      ......++.|+|++|+.+|+.+.+++.+.     .+..  ++++++.++|+...    ...+.+.+..  ...++.  ++
T Consensus       452 ~~~~~~~V~LIw~vR~~~dL~~~del~~~l~~~~~~~~--~lkl~iyVTRE~~~----~~rl~~~i~~~~~~~~~~--~~  523 (722)
T PLN02844        452 RYRFPKRVQLIYVVKKSQDICLLNPISSLLLNQSSNQL--NLKLKVFVTQEEKP----NATLRELLNQFSQVQTVN--FS  523 (722)
T ss_pred             ccCCCCcEEEEEEECCHHHhhhHHHHHHHhHHhHHHhc--CceEEEEECCCCCC----CCchhhHhhccchhhhcC--CC
Confidence            22223679999999999999999988632     2222  78888889998643    1234443332  111111  34


Q ss_pred             cCCeEEEEECCcc
Q 043022          311 KDNTYVYMCGLRG  323 (361)
Q Consensus       311 ~~~~~vyvCGp~~  323 (361)
                      ++...+.+||+..
T Consensus       524 ~~~~~~~i~G~~~  536 (722)
T PLN02844        524 TKCSRYAIHGLES  536 (722)
T ss_pred             CCCCceEEeCCCc
Confidence            4567799999975

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes

Probab=99.85  E-value=4.2e-21  Score=152.28  Aligned_cols=109  Identities=30%  Similarity=0.494  Sum_probs=90.3

Q ss_pred             EEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeE
Q 043022          214 MLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMY  293 (361)
Q Consensus       214 ~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~  293 (361)
                      |||||||||||++|+++++..+.     ..+++|+||+|+.+|++|.++|+++...+++++.+..+ ++.++.|.+.+++
T Consensus         1 lIagGtGIaP~~s~l~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~   74 (109)
T PF00175_consen    1 LIAGGTGIAPFLSMLRYLLERND-----NRKVTLFYGARTPEDLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR   74 (109)
T ss_dssp             EEEEGGGGHHHHHHHHHHHHHTC-----TSEEEEEEEESSGGGSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred             CeecceeHHHHHHHHHHHHHhCC-----CCCEEEEEEEcccccccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence            79999999999999999987632     47999999999999999999999999998854777665 6666777788999


Q ss_pred             ecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHH
Q 043022          294 IQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDD  330 (361)
Q Consensus       294 v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~  330 (361)
                      |++.+.+....  ......+..||+|||++|+++|++
T Consensus        75 v~~~~~~~~~~--~~~~~~~~~v~iCGp~~m~~~v~~  109 (109)
T PF00175_consen   75 VTDLLLEDLLP--EKIDPDDTHVYICGPPPMMKAVRK  109 (109)
T ss_dssp             HHHHHHHHHHH--HHHCTTTEEEEEEEEHHHHHHHHH
T ss_pred             hhHHHHHhhcc--cccCCCCCEEEEECCHHHHHHhcC
Confidence            99988654433  233346899999999999999874

Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]

Probab=99.84  E-value=1.9e-21  Score=170.21  Aligned_cols=218  Identities=21%  Similarity=0.262  Sum_probs=146.0

Q ss_pred             CCeeEEEEeEeeecCCCCCCceEEEEeeCCC----ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022           83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEG----EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV  158 (361)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~----~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l  158 (361)
                      .+...+|.+++.++.|     +..+.+..-.    ..+..|||||.+...-....  ...-|.||.+++...   ..+.+
T Consensus       148 G~~~F~vT~~~~~sSD-----v~~~~~~PK~~~~~~~~~~PGQYvsV~~~~~~~~--~k~~~~~~~S~~~~t---~rN~~  217 (385)
T KOG3378|consen  148 GEVEFKVTELINESSD-----VKSVYLGPKDPAFRISHAHPGQYVSVLWEIPGLS--HKTLREYSLSNRVDT---CRNQF  217 (385)
T ss_pred             Cccceeeeeeeccccc-----eeEEEecCCCcceeeccCCCCceEEEeecCCccc--hhHHHHHHHhhhhhh---hccce
Confidence            3567889999999998     8998887632    35689999999985433211  113355555554432   57899


Q ss_pred             EEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCC--CCCCCcEEEEecCCchhhHHHHHHHHHhhc
Q 043022          159 SLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMP--RDPNATVIMLATGTGIAPFRGFLWKMFFEK  235 (361)
Q Consensus       159 ~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~--~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~  235 (361)
                      .|.||++.         +|.+|+|+|+ ++.||.|.++.|-|+|.+..  .+.++|++++|||+||||+++|++..+.  
T Consensus       218 R~sVr~~A---------~G~VS~~~H~~~KVGD~v~~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~--  286 (385)
T KOG3378|consen  218 RISVRRVA---------GGVVSNFVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL--  286 (385)
T ss_pred             eEEEeehh---------chhhHHHhhccccccceeeccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh--
Confidence            99999987         8999999998 99999999999999975432  3556899999999999999999987653  


Q ss_pred             ccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhH-HHHHHHhccCCe
Q 043022          236 HEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYA-NELWELLKKDNT  314 (361)
Q Consensus       236 ~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~-~~~~~~l~~~~~  314 (361)
                                  .|..|     .+...++++..+...+.+..-.++.+....  .+..|...+...+ ++..+.++...+
T Consensus       287 ------------C~~~R-----P~~~~~~~~~~K~k~~~K~~e~~~~E~s~~--~~~IV~~~~~~iI~~~~L~~~~~s~~  347 (385)
T KOG3378|consen  287 ------------CYSSR-----PFKQWLEQLKLKYKENLKLKEFFSEESSVT--KEQIVDEVMTRIINEEDLEKLDLSEC  347 (385)
T ss_pred             ------------cCCCC-----cHHHHHHHHHHHHHHHHHHHHHHHHhhccc--hhhhhhhhhhhhcCHHHhhhcChhhC
Confidence                        22223     333344444332221222222233322110  1112322222222 122233444689


Q ss_pred             EEEEECCcchHHHHHHHHHHHHHccC
Q 043022          315 YVYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       315 ~vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                      +||+|||..+|+.+...|.++|...+
T Consensus       348 DiY~~G~~~~M~~~~~~L~~L~~~~~  373 (385)
T KOG3378|consen  348 DIYMLGPNNYMRFVKQELVKLGVEPN  373 (385)
T ss_pred             ceeeeCcHHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999998875

>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.80  E-value=1.9e-18  Score=175.63  Aligned_cols=227  Identities=17%  Similarity=0.219  Sum_probs=160.4

Q ss_pred             eEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022           86 IGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL  165 (361)
Q Consensus        86 ~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~  165 (361)
                      ..++.++.-+..+     +.++++..|..++|+||||+.|.+|...    .+|.|||||+|+|     +++.+.++||. 
T Consensus       356 ~~~i~~~~llp~~-----vi~L~~~Kp~~f~y~~Gqyifv~~p~ls----~~qwHPFTItSsp-----~dd~lsvhIk~-  420 (646)
T KOG0039|consen  356 NVKIAKVVLLPSD-----VLELIMSKPPGFKYKPGQYIFVNCPSLS----KLEWHPFTITSAP-----EDDFLSVHIKA-  420 (646)
T ss_pred             CceEEEEEEcCCC-----eEEEEEeCCCCCCCCCCCEEEEECcccc----ccccCCceeecCC-----CCCEEEEEEEe-
Confidence            3566777777766     9999999999999999999999998876    6799999999999     56899999998 


Q ss_pred             eEecCCCceecCccchhhhc-CC------------CCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHH
Q 043022          166 VYTNENGEIVKGVCSNFLCD-LK------------PGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMF  232 (361)
Q Consensus       166 ~~~~~~~~~~~G~~S~~L~~-l~------------~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~  232 (361)
                                .|.+|+.|.+ +.            ..-++.|+||||..... -...+.++|||+|+|++|+.+++++++
T Consensus       421 ----------~g~wT~~L~~~~~~~~~~~~~~~~~~~~~i~IdGPYG~~s~d-~~~~e~~vLV~~GiGvtPf~sil~~l~  489 (646)
T KOG0039|consen  421 ----------LGDWTEKLRNAFSEVSQPPESDKSYPFPKILIDGPYGAPSQD-VFKYEVLVLVGGGIGVTPFASILKDLL  489 (646)
T ss_pred             ----------cCcHHHHHHHHHhhhcccccccccccCceEEEECCCCCCchh-hhhcceEEEEccCcccCccHHHHHHHH
Confidence                      5889988876 33            14479999999986532 245678899999999999999999988


Q ss_pred             hhccccc-----------ccCCeEEEEEeccCCccc-ccHHHHHHHHHhCC-CceEEEEEecCC---ccc----------
Q 043022          233 FEKHEDY-----------KFNGLAWLFLGVPTSSSL-LYKEEFEKMKEKAP-ENFRLDFAVSRE---QKN----------  286 (361)
Q Consensus       233 ~~~~~~~-----------~~~~~i~L~~g~r~~~d~-~~~~el~~l~~~~~-~~~~~~~~~s~~---~~~----------  286 (361)
                      .+.+.+.           ...+++.++|.+|...++ +|.+.+.++..... +-.+++..++..   .+.          
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~wf~~~l~~v~~~~~~~~~e~~~~~t~~~~~~d~~~~~~~~~~~  569 (646)
T KOG0039|consen  490 NKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEWFKGLLTEVEEYDSSGVIELHNYVTSSYEEGDARSALIQMVQK  569 (646)
T ss_pred             hhccCCCCcCccccccccceecceeEEEEeccccchHHHHHHHHHHHHHHhcCCchhheehhHhHhhhhhhhHHHHHHHh
Confidence            7543321           234678999998888765 67777777663311 124455444421   000          


Q ss_pred             ---CCCCeeE------ecchHHHhHHHHHHHhcc--CC--eEEEEECCcchHHHHHHHHHHHHHc
Q 043022          287 ---EKGEKMY------IQTRMAEYANELWELLKK--DN--TYVYMCGLRGMEKGIDDIMVSLAAN  338 (361)
Q Consensus       287 ---~~g~~~~------v~~~l~~~~~~~~~~l~~--~~--~~vyvCGp~~m~~~v~~~L~~~g~~  338 (361)
                         ..+.+..      ..+.-+.+.+++++.+..  ++  ..|++|||+.|++.+++.+.+....
T Consensus       570 ~~~~~~~~di~~g~~~~~~~gRPn~~~~~~~~~~~~~~~~vgVf~CGp~~l~~~~~~~~~~~~~~  634 (646)
T KOG0039|consen  570 LLHAKNGVDIVTGLKVETHFGRPNWKEVFKEIAKSHPNVRVGVFSCGPPGLVKELRKLCNDFSSS  634 (646)
T ss_pred             hcccccCccccccceeeeeCCCCCHHHHHHHHHhhCCCceEEEEEeCCHHHHHHHHHHHHhcccc
Confidence               0001011      111113333344433321  22  6899999999999999999887665

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain

Probab=99.71  E-value=4.8e-17  Score=126.73  Aligned_cols=95  Identities=29%  Similarity=0.387  Sum_probs=81.5

Q ss_pred             eEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022           86 IGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV  162 (361)
Q Consensus        86 ~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V  162 (361)
                      .++|++++.++++     ++.++|+.+.   .+.|.||||+.|.++..+    ....|+|||+|.+.    +.+.++|+|
T Consensus         1 ~~~v~~~~~~s~~-----~~~~~~~~~~~~~~~~~~pGQ~v~v~~~~~~----~~~~R~yS~~s~~~----~~~~~~~~i   67 (99)
T PF00970_consen    1 KAKVVEIEELSPD-----VKIFRFKLPDPDQKLDFKPGQFVSVRVPING----KQVSRPYSPASSPD----DKGYLEFAI   67 (99)
T ss_dssp             EEEEEEEEEESSS-----EEEEEEEESSTTTT-SSTTT-EEEEEEEETT----EEEEEEEEBCSSTT----SSSEEEEEE
T ss_pred             CEEEEEEEEeCCC-----eEEEEEEECCCCcccccCcceEEEEEEccCC----cceecceeEeeecC----CCCcEEEEE
Confidence            4789999999999     9999999874   356999999999987321    23689999999996    678999999


Q ss_pred             EEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCc
Q 043022          163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEM  202 (361)
Q Consensus       163 ~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~  202 (361)
                      |+.+         +|.+|+||+++++||.|.|+||+|+|.
T Consensus        68 k~~~---------~G~~S~~L~~l~~Gd~v~i~gP~G~f~   98 (99)
T PF00970_consen   68 KRYP---------NGRVSRYLHQLKPGDEVEIRGPYGNFT   98 (99)
T ss_dssp             EECT---------TSHHHHHHHTSCTTSEEEEEEEESSEE
T ss_pred             Eecc---------CCHHHHHHHhCCCCCEEEEEEcccccC
Confidence            9986         899999999999999999999999864

To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.63  E-value=1.3e-14  Score=150.29  Aligned_cols=126  Identities=17%  Similarity=0.197  Sum_probs=103.3

Q ss_pred             CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCcc-ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022           82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEV-PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL  160 (361)
Q Consensus        82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l-~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~  160 (361)
                      ...+.++|++++.++++     ++.+++..|... .++||||+.|..++.+. .....+|++||++...    +.+.++|
T Consensus       788 ~~~l~~~Vv~~~~lap~-----i~~L~l~aP~iA~~~kPGQFVmL~~~~~g~-~~l~~p~P~SI~~vD~----e~g~It~  857 (1028)
T PRK06567        788 DYLLTSRVNKINILDDK-----TFELIIHSPLAAKNFKFGQFFRLQNYSEDA-AKLIEPVALSPIDIDV----EKGLISF  857 (1028)
T ss_pred             hhhhceEEEEEEEecCC-----EEEEEEeCcchhhcCCCCceEEEEeCCCCC-ccccCceeEEeeccCC----CCCEEEE
Confidence            34678999999999999     999999998743 58999999999753210 1112567999999875    6789999


Q ss_pred             EEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHh
Q 043022          161 CVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF  233 (361)
Q Consensus       161 ~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~  233 (361)
                      +++.+           |..|..|+.+++||.|.+.||+|+.|..+.  .+++++||||+|+||   +++++..
T Consensus       858 i~rvV-----------GkgT~~Ls~l~~Gd~v~v~GPLG~pF~i~~--~k~vLLVgGGVGiAp---Lak~Lk~  914 (1028)
T PRK06567        858 IVFEV-----------GKSTSLCKTLSENEKVVLMGPTGSPLEIPQ--NKKIVIVDFEVGNIG---LLKVLKE  914 (1028)
T ss_pred             EEEEE-----------ChHHHHHhcCCCCCEEEEEcccCCCCCCCC--CCeEEEEEccccHHH---HHHHHHH
Confidence            99986           899999999999999999999999887753  368999999999997   4566554

>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins

Probab=99.50  E-value=8e-14  Score=117.67  Aligned_cols=122  Identities=18%  Similarity=0.319  Sum_probs=74.0

Q ss_pred             CcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCccc-ccHHHHHHHHHhCC-CceEEEEEecCCcccC
Q 043022          210 ATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSL-LYKEEFEKMKEKAP-ENFRLDFAVSREQKNE  287 (361)
Q Consensus       210 ~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~-~~~~el~~l~~~~~-~~~~~~~~~s~~~~~~  287 (361)
                      ..++|||||+||+|+++++++++...........++.|+|.+|+.+++ +|.++|.++..... .++++.++++++....
T Consensus         2 ~~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~~~   81 (156)
T PF08030_consen    2 DNVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESSAP   81 (156)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT-----
T ss_pred             CEEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCcccc
Confidence            579999999999999999999877654222335789999999999876 67766665543322 2799999988764321


Q ss_pred             C----------C------C---------e-eEecchHHHhHHHHHHHh----ccCCeEEEEECCcchHHHHHHHH
Q 043022          288 K----------G------E---------K-MYIQTRMAEYANELWELL----KKDNTYVYMCGLRGMEKGIDDIM  332 (361)
Q Consensus       288 ~----------g------~---------~-~~v~~~l~~~~~~~~~~l----~~~~~~vyvCGp~~m~~~v~~~L  332 (361)
                      .          +      .         + ..+..- +..++++....    ..+...|++|||++|+++++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~d~~s~~~~~~~~~g-RP~~~~~~~~~~~~~~~~~~~V~~CGP~~m~~~vr~~v  155 (156)
T PF08030_consen   82 SNSDSSDSSSDGENSSSESSNVDSVSPTSNISVHYG-RPDLDEILSEVASQQSSGRVAVFVCGPPSMVDDVRNAV  155 (156)
T ss_dssp             --------------------------------EEES----HHHHHHHHHHHSTT-EEEEEEES-HHHHHHHHHHH
T ss_pred             cchhhhhcccccccccccccCCcccCCCcccceecC-CCCHHHHHHHHHHhCCCCcEEEEEcCcHHHHHHHHHHh
Confidence            0          0      0         0 001111 22233333222    23577899999999999999865

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase

Probab=99.13  E-value=2.7e-13  Score=120.96  Aligned_cols=133  Identities=21%  Similarity=0.259  Sum_probs=80.7

Q ss_pred             ccceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeee
Q 043022           20 TRTSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKI   95 (361)
Q Consensus        20 ~~~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~   95 (361)
                      .....|+|.|+|++++|++|+||++  +++++..|+.++++.+.+...  +......+.. ..|.....  .+++++-..
T Consensus        83 ~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~-~~~~~~~~--~t~~dil~~  159 (219)
T PF00667_consen   83 NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDY-KDYIWRER--RTLLDILED  159 (219)
T ss_dssp             SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHH-HHHTTTTT--HCHHHHHHH
T ss_pred             cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhh-hhhhhccc--CcHHHHHhh
Confidence            3456789999999999999999999  999999999999998877742  2222111111 11211000  111111111


Q ss_pred             cCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCcee
Q 043022           96 TGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIV  175 (361)
Q Consensus        96 ~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~  175 (361)
                      -+                ......++++.+..        ++++|+|||||+|..   +++.++|+|.++.|.+..++.+
T Consensus       160 fp----------------s~~~pl~~ll~~lp--------~l~PR~YSIsSS~~~---~p~~v~ltv~vv~~~~~~g~~r  212 (219)
T PF00667_consen  160 FP----------------SCKPPLEELLELLP--------PLQPRYYSISSSPLV---HPNKVHLTVSVVEYPTPRGRIR  212 (219)
T ss_dssp             ST----------------TBTC-HHHHHHHS---------B---EEEEB-S-TTT---STTEEEEEEEE-EEECTTSSEE
T ss_pred             Cc----------------ccCCCHHHhhhhCC--------CCCCcceeecccccC---CCCEEEEEEEEEEEecCCCCee
Confidence            11                01111223333332        568999999999976   7899999999999988999999


Q ss_pred             cCccchh
Q 043022          176 KGVCSNF  182 (361)
Q Consensus       176 ~G~~S~~  182 (361)
                      .|.||+|
T Consensus       213 ~G~cS~y  219 (219)
T PF00667_consen  213 RGVCSSY  219 (219)
T ss_dssp             E-HHHHH
T ss_pred             EeeCCCC
Confidence            9999987

Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....

>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245

Probab=99.12  E-value=6.4e-12  Score=98.77  Aligned_cols=91  Identities=22%  Similarity=0.296  Sum_probs=6.3

Q ss_pred             EEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022           87 GRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL  165 (361)
Q Consensus        87 ~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~  165 (361)
                      .++.+++.+..+     ++++++..+.. +.|+||||+.|.++.....  .++.|||||+|.|     +++.+.|+||. 
T Consensus         4 ~~~~~v~~~~~~-----~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~--~~q~HPFTIas~~-----~~~~i~l~ik~-   70 (105)
T PF08022_consen    4 VRIASVELLPDD-----VVEITIPKPSSPFKWKPGQYVFLSFPSISKW--FWQWHPFTIASSP-----EDNSITLIIKA-   70 (105)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEEEcCCC-----EEEEEEECCCCCCCCCCceEEEEEEcCcCcC--cccccccEeeccC-----CCCEEEEEEEe-
Confidence            345566666666     89999999886 8999999999999876511  1389999999998     57899999998 


Q ss_pred             eEecCCCceecCccchhhhc-CC-------CCCEEEEEccCCC
Q 043022          166 VYTNENGEIVKGVCSNFLCD-LK-------PGAEVKITGPVGK  200 (361)
Q Consensus       166 ~~~~~~~~~~~G~~S~~L~~-l~-------~G~~v~i~gP~G~  200 (361)
                                .|.+|..|.+ +.       .+-++.|+||||.
T Consensus        71 ----------~g~~T~~L~~~~~~~~~~~~~~~~v~idGPYG~  103 (105)
T PF08022_consen   71 ----------RGGWTKRLYEHLSESPSKQGNRLRVFIDGPYGA  103 (105)
T ss_dssp             ------------------------------------TTSTTSH
T ss_pred             ----------CCCchHHHHHHHhhhcccCCCceEEEEECCCCC
Confidence                      4778888876 32       2346889999995

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]

Probab=99.11  E-value=1.6e-08  Score=90.89  Aligned_cols=222  Identities=15%  Similarity=0.235  Sum_probs=151.1

Q ss_pred             CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCcccc---CCCc-EEEEecCCCCCCC----------------CCCCcee
Q 043022           82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPY---KEGQ-SIGVIADGVDKNA----------------KPHKLRL  141 (361)
Q Consensus        82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~---~pGQ-~v~l~~~~~~~~~----------------~~~~~R~  141 (361)
                      .....++|+.++++++.     +.+++|..+....|   .+|+ |+.|.++......                .....|.
T Consensus        15 ~~~~~~~V~~~~~lsP~-----m~Rv~~~g~~l~~f~~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~   89 (265)
T COG2375          15 PRLHEATVTRVTQLSPH-----MVRVVLGGEGLAGFASLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRT   89 (265)
T ss_pred             ccceEEEEEEEEecCCC-----eEEEEEecccccccccccCCCceeEEEecCccCCCCCCcccccccccCccccCCCccc
Confidence            45788999999999999     99999999875443   5554 9999987655332                1135899


Q ss_pred             cccccCCCCCCCCCcEEEEEEEEe-eEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCc
Q 043022          142 YSIASSALGDFGDSKTVSLCVKRL-VYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTG  220 (361)
Q Consensus       142 ySias~p~~~~~~~~~l~~~V~~~-~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtG  220 (361)
                      |||.+...    +.+++.|-+..+ +         .|..|.|-.+.++||+|.|.||.|..+..  .....++|||-=|+
T Consensus        90 YTiR~~d~----~~~e~~vDfVlH~~---------~gpas~WA~~a~~GD~l~i~GP~g~~~p~--~~~~~~lLigDetA  154 (265)
T COG2375          90 YTIRAVDA----AAGELDVDFVLHGE---------GGPASRWARTAQPGDTLTIMGPRGSLVPP--EAADWYLLIGDETA  154 (265)
T ss_pred             ceeeeecc----cccEEEEEEEEcCC---------CCcchhhHhhCCCCCEEEEeCCCCCCCCC--CCcceEEEeccccc
Confidence            99987644    456666655554 3         79999999999999999999999985443  45578999999999


Q ss_pred             hhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHH
Q 043022          221 IAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAE  300 (361)
Q Consensus       221 iaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~  300 (361)
                      +-.|.++|+.+-..        .+...|.-+.+.+|.   +   .+  .++..+++.-...+...        -...+..
T Consensus       155 lPAIa~iLE~lp~~--------~~~~a~lev~d~ad~---~---~l--~~~~~l~~~Wl~r~~~~--------~~~ll~~  210 (265)
T COG2375         155 LPAIARILETLPAD--------TPAEAFLEVDDAADR---D---EL--PSPDDLELEWLARDDAP--------TEQLLAA  210 (265)
T ss_pred             hHHHHHHHHhCCCC--------CceEEEEEeCChHHh---h---cc--CCCCceeEEEecCCCcc--------chHHHHH
Confidence            99999999987532        344667777776653   1   12  12236676654333211        1112222


Q ss_pred             hHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHH-HHccC-CCHHHHHHH
Q 043022          301 YANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSL-AANDG-IDWLDYKKQ  349 (361)
Q Consensus       301 ~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~-g~~~~-~~~~~~~~~  349 (361)
                      ...+. . +..++..+|+.|-..+++++++.|++- |.... +...-|+++
T Consensus       211 a~~~~-~-~P~~~~~vwiagE~~~v~~~Rk~L~~e~g~dk~~i~a~gYW~~  259 (265)
T COG2375         211 ALAQA-A-LPAGDYYVWIAGEASAVKAIRKFLRNERGFDKSRVRAIGYWRR  259 (265)
T ss_pred             HHhcc-c-CCCCceEEEEeccHHHHHHHHHHHhhhcCCCHHHhhhhhhhhc
Confidence            22211 1 221358999999999999999999884 33322 444445543

>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins

Probab=98.54  E-value=2.4e-07  Score=74.05  Aligned_cols=96  Identities=17%  Similarity=0.250  Sum_probs=61.6

Q ss_pred             EEEeEeeecCCCCCCceEEEEeeCCCc--cc-cCCCcEEEEecCCCCCCCC-----------------CCCceecccccC
Q 043022           88 RCLLNTKITGDDAPGETWHMVFSTEGE--VP-YKEGQSIGVIADGVDKNAK-----------------PHKLRLYSIASS  147 (361)
Q Consensus        88 ~v~~~~~~~~~~~~~~~~~l~l~~~~~--l~-~~pGQ~v~l~~~~~~~~~~-----------------~~~~R~ySias~  147 (361)
                      +|++++.+++.     +.+++|..++.  +. ..+|||+.|.++.......                 ....|.||+.+.
T Consensus         1 ~V~~~~~ltP~-----~~Rv~l~g~~l~~~~~~~~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~   75 (117)
T PF08021_consen    1 TVVRVERLTPH-----MRRVTLGGEDLAGFPSWGPDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRF   75 (117)
T ss_dssp             EEEEEEEEETT-----EEEEEEESGGGTT--S--TT-EEEEEE--TTS----------------------EEEEEE--EE
T ss_pred             CEEEEEECCCC-----EEEEEEECCCcccCccCCCCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeE
Confidence            58899999999     99999998763  33 5799999999886553321                 124899999998


Q ss_pred             CCCCCCCCcEEEEEEEEeeEecCCCceec-CccchhhhcCCCCCEEEEEccCCCC
Q 043022          148 ALGDFGDSKTVSLCVKRLVYTNENGEIVK-GVCSNFLCDLKPGAEVKITGPVGKE  201 (361)
Q Consensus       148 p~~~~~~~~~l~~~V~~~~~~~~~~~~~~-G~~S~~L~~l~~G~~v~i~gP~G~~  201 (361)
                      ..    +.+++.|-+..+.         . |..+.|....++||.|.|.||.|.|
T Consensus        76 d~----~~~~l~iDfv~Hg---------~~Gpas~WA~~A~pGd~v~v~gP~g~~  117 (117)
T PF08021_consen   76 DP----ETGELDIDFVLHG---------DEGPASRWARSARPGDRVGVTGPRGSF  117 (117)
T ss_dssp             ET----T--EEEEEEE--S---------S--HHHHHHHH--TT-EEEEEEEE---
T ss_pred             cC----CCCEEEEEEEECC---------CCCchHHHHhhCCCCCEEEEeCCCCCC
Confidence            65    5678888777664         3 8899999999999999999999864

This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.

>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase

Probab=95.10  E-value=0.058  Score=48.01  Aligned_cols=52  Identities=21%  Similarity=0.426  Sum_probs=38.9

Q ss_pred             ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022           79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV  130 (361)
Q Consensus        79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~  130 (361)
                      |....++.++|+++++++......++++++|+.+. .+.|+||+++.|.+++.
T Consensus         3 ~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~   55 (219)
T PF00667_consen    3 YSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPND   55 (219)
T ss_dssp             HBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSE
T ss_pred             cCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCC
Confidence            45677999999999999998888999999999865 79999999999998764

Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component

Probab=88.98  E-value=1.1  Score=46.13  Aligned_cols=53  Identities=26%  Similarity=0.508  Sum_probs=45.5

Q ss_pred             cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022           78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV  130 (361)
Q Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~  130 (361)
                      .|.+..++.++|+.+.+++...+..++++++|+.+. .+.|+||+++.|.+.+.
T Consensus       228 ~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~~~~~~Y~~GD~l~V~P~N~  281 (597)
T TIGR01931       228 VYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLEGSGLHYEPGDALGVWYKND  281 (597)
T ss_pred             CccCCCCeEEEEEeeEecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEeCCC
Confidence            355667899999999999988777889999999754 68899999999998764

This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=85.13  E-value=2.3  Score=41.70  Aligned_cols=47  Identities=15%  Similarity=0.413  Sum_probs=40.9

Q ss_pred             CCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022           83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV  130 (361)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~  130 (361)
                      .++.++|++..+++.. ...++++++|+.+. .+.|+||+++.|.+.+.
T Consensus         4 ~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~   51 (416)
T cd06204           4 NPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNP   51 (416)
T ss_pred             CCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCC
Confidence            4778999999999987 66789999999865 78899999999998764

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>PF04954 SIP: Siderophore-interacting protein; InterPro: IPR007037 This entry includes the vibriobactin utilization protein viuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins

Probab=83.28  E-value=11  Score=29.85  Aligned_cols=104  Identities=11%  Similarity=0.199  Sum_probs=59.2

Q ss_pred             CcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCC
Q 043022          210 ATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKG  289 (361)
Q Consensus       210 ~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g  289 (361)
                      +.++|+|--|++-.+..+++.+-.        ..+..++.-+.+.+|...   |..    .. +++++.........   
T Consensus         2 ~~~ll~gDeTalPAi~~iLe~lp~--------~~~~~v~iev~~~~d~~~---l~~----~~-~~~v~wv~r~~~~~---   62 (119)
T PF04954_consen    2 DRYLLVGDETALPAIARILEALPA--------DAPGTVFIEVPDEADRQP---LPA----PA-GVEVTWVPRDGPAA---   62 (119)
T ss_dssp             SEEEEEEEGGGHHHHHHHHHHS-T--------T-EEEEEEEESSGGG--------------T-EEEEEEEE-SS--T---
T ss_pred             ceEEEEeccccHHHHHHHHHhCCC--------CCeEEEEEEECChHhccc---CCC----CC-CCEEEEEeCCCCCc---
Confidence            457999999999999999998731        246677777777665332   221    22 77877665443200   


Q ss_pred             CeeEecchHHHhHHHHHHHh-ccCCeEEEEECCcchHHHHHHHHH-HHHHcc
Q 043022          290 EKMYIQTRMAEYANELWELL-KKDNTYVYMCGLRGMEKGIDDIMV-SLAAND  339 (361)
Q Consensus       290 ~~~~v~~~l~~~~~~~~~~l-~~~~~~vyvCGp~~m~~~v~~~L~-~~g~~~  339 (361)
                      ..    ..+.+   .+.... ..+...++++|-..+++++++.|. +.|...
T Consensus        63 ~~----~~l~~---al~~~~~~~~~~~vW~AgE~~~~r~lR~~l~~~~g~~~  107 (119)
T PF04954_consen   63 QG----SALAD---ALRDLPLPAGDGYVWVAGEASAVRALRRHLREERGLPR  107 (119)
T ss_dssp             T-----HHHHH---HHTTS---SS-EEEEEEEEHHHHHHHHHHHHHH----G
T ss_pred             hH----HHHHH---HHHHhhccCCCeEEEEEecHHHHHHHHHHHHHhhCCCH
Confidence            11    11111   111111 126889999999999999999998 445543

; PDB: 2GPJ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	361
3vo1_A	314	Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+		1e-161
1qg0_A	308	Wild-type Pea Fnr Length = 308		1e-161
1gaq_A	314	Crystal Structure Of The Complex Between Ferredoxin		1e-160
4af6_A	308	Pea Fnr L268v Mutant Length = 308		1e-160
1qga_A	308	Pea Fnr Y308w Mutant In Complex With Nadp+ Length =		1e-160
1qfy_A	308	Pea Fnr Y308s Mutant In Complex With Nadp+ Length =		1e-160
4af7_A	308	Pea Fnr C266m Mutant Length = 308		1e-159
3vo2_A	310	Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+		1e-158
1fnb_A	314	Refined Crystal Structure Of Spinach Ferredoxin Red		1e-158
1bx1_A	314	Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta		1e-158
1frq_A	314	Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta		1e-157
1frn_A	314	The Involvement Of Ser96 In The Catalytic Mechanism		1e-157
1bx0_A	314	Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reducta		1e-157
1sm4_A	296	Crystal Structure Analysis Of The Ferredoxin-Nadp+		1e-155
2xnc_A	315	Crystal Structure Of An Engineered Ferredoxin Nadp		1e-155
3mhp_A	296	Fnr-Recruitment To The Thylakoid Length = 296		1e-154
2b5o_A	402	Ferredoxin-nadp Reductase Length = 402		1e-98
1ewy_A	303	Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reduct		3e-92
1quf_A	304	X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+		6e-92
1que_A	303	X-Ray Structure Of The Ferredoxin:nadp+ Reductase F		8e-92
1gjr_A	304	Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By		9e-92
2x3u_A	303	Ferredoxin-Nadp Reductase Mutant With Tyr 303 Repla		1e-91
1e62_A	304	Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla		1e-91
1e64_A	304	Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla		2e-91
1go2_A	304	Structure Of Ferredoxin-nadp+ Reductase With Lys 72		2e-91
1gr1_A	303	Structure Of Ferredoxin-Nadp+ Reductase With Glu 13		3e-91
1e63_A	304	Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla		3e-91
1b2r_A	304	Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Leng		4e-91
1w35_A	304	Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Leng		4e-91
1w34_A	304	Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Lengt		4e-91
1ogj_A	303	Ferredoxin:nadp+ Reductase Mutant With Leu 263 Repl		6e-91
1qgy_A	295	Ferredoxin:nadp+ Reductase Mutant With Lys 75 Repla		7e-91
1h85_A	295	Ferredoxin:nadp+ Reductase Mutant With Val 136 Repl		7e-91
1bjk_A	295	Ferredoxin:nadp+ Reductase Mutant With Arg 264 Repl		1e-90
2bsa_A	303	Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Compl		2e-90
1ogi_A	303	Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl		2e-90
1bqe_A	295	Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl		2e-90
1qgz_A	295	Ferredoxin:nadp+ Reductase Mutant With Leu 78 Repla		3e-90
1h42_A	304	Ferredoxin:nadp+ Reductase Mutant With Thr 155 Repl		1e-89
1qh0_A	295	Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutat		2e-89
2vyq_A	304	Ferredoxin:nadp Reductase Mutant With Thr 155 Repla		3e-89
2bmw_A	304	Ferredoxin: Nadp+reductase Mutant With Thr 155 Repl		7e-88
1jb9_A	316	Crystal Structure Of The Ferredoxin:nadp+ Reductase		8e-79
3lvb_A	311	Crystal Structure Of The Ferredoxin:nadp+ Reductase		9e-79
3lo8_A	311	Crystal Structure Of The Oxidized Form Of Ferredoxi		5e-78
2rc5_A	314	Refined Structure Of Fnr From Leptospira Interrogan		2e-38
3jqp_A	316	Crystal Structure Of The H286l Mutant Of Ferredoxin		4e-22
2ok7_A	316	Ferredoxin-Nadp+ Reductase From Plasmodium Falcipar		2e-21
3jqq_A	316	Crystal Structure Of The H286k Mutant Of Ferredoxin		3e-21
1ddg_A	374	Crystal Structure Of Sir-Fp60 Length = 374		6e-18
3es9_A	618	Nadph-Cytochrome P450 Reductase In An Open Conforma		1e-15
1amo_A	615	Three-Dimensional Structure Of Nadph-Cytochrome P45		2e-15
1j9z_A	622	Cypor-W677g Length = 622		2e-15
1ja0_A	620	Cypor-W677x Length = 620		2e-15
3fjo_A	637	Structure Of Chimeric Yh Cpr Length = 637		4e-15
3qfs_A	458	Crystal Structure Of Nadph-Cytochrome P450 Reductas		4e-15
3qe2_A	618	Crystal Structure Of Human Nadph-Cytochrome P450 Re		5e-15
3qfr_A	618	Crystal Structure Of Human Nadph-Cytochrome P450 Re		1e-14
3qft_A	458	Crystal Structure Of Nadph-Cytochrome P450 Reductas		1e-14
3ojx_A	622	Disulfide Crosslinked Cytochrome P450 Reductase Ina		2e-14
3qfc_A	618	Crystal Structure Of Human Nadph-Cytochrome P450 (V		3e-14
2qtl_A	539	Crystal Structure Of The Fad-Containing Fnr-Like Mo		5e-14
2qtz_A	539	Crystal Structure Of The Nadp+-Bound Fad-Containing		5e-14
1ja1_A	622	Cypor-Triple Mutant Length = 622		7e-14
2bf4_A	682	A Second Fmn-Binding Site In Yeast Nadph-Cytochrome		2e-13
2bpo_A	682	Crystal Structure Of The Yeast Cpr Triple Mutant: D		2e-13
4dql_A	393	Crystal Structure Of The Fad Binding Domain Of Cyto		2e-12
4dqk_A	391	Crystal Structure Of The Fad Binding Domain Of Cyto		2e-12
1f20_A	435	Crystal Structure Of Rat Neuronal Nitric-Oxide Synt		1e-10
1tll_A	688	Crystal Structure Of Rat Neuronal Nitric-Oxide Synt		2e-10
2xnj_A	266	Crystal Structure Of An Engineered Ferredoxin(Flavo		1e-08
2r6h_A	290	Crystal Structure Of The Domain Comprising The Nad		8e-07
1krh_A	338	X-Ray Stucture Of Benzoate Dioxygenase Reductase Le		1e-05

>pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Ii Length = 314

Iteration: 1
 Score =  563 bits (1452), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 265/314 (84%), Positives = 284/314 (90%)
Query: 48  VVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHM 107
           +VS       E   K+EK SKK EEG++ NK+KPK PY+GRCLLNT+ITGD APGETWHM
Sbjct: 1   MVSTTETAEAEPVKKLEKVSKKQEEGLVTNKYKPKEPYVGRCLLNTRITGDQAPGETWHM 60
Query: 108 VFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 167
           VFSTEGEVPY+EGQSIGVIADG DKN KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY
Sbjct: 61  VFSTEGEVPYREGQSIGVIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 120
Query: 168 TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGF 227
           TN+ GE+VKGVCSNFLCDLKPGAEVKITGPVGKEMLMP+DPNAT+IMLATGTGIAPFR F
Sbjct: 121 TNDQGEVVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSF 180
Query: 228 LWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNE 287
           LWKMFFE+HEDYK+ GLAWLFLGVPTS +LLYKEE EKMKE AP+NFRLDFAVSREQ N 
Sbjct: 181 LWKMFFEEHEDYKYTGLAWLFLGVPTSDTLLYKEELEKMKEMAPDNFRLDFAVSREQTNA 240
Query: 288 KGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYK 347
            GEKMYIQTRMAEY  ELWELLKKDNTYVYMCGL+GMEKGIDDIM+ LAA DGI+WLDYK
Sbjct: 241 AGEKMYIQTRMAEYKEELWELLKKDNTYVYMCGLKGMEKGIDDIMLDLAAKDGINWLDYK 300
Query: 348 KQLKKSEQWNVEVY 361
           KQLKKSEQWNVEVY
Sbjct: 301 KQLKKSEQWNVEVY 314

>pdb|1QG0|A Chain A, Wild-type Pea Fnr Length = 308

Iteration: 1
 Score =  563 bits (1450), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/308 (88%), Positives = 294/308 (95%)
Query: 54  QVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG 113
           QVTTEAPAKV K SKK +E ++VNKFKPK PY+GRCLLNTKITGDDAPGETWHMVFSTEG
Sbjct: 1   QVTTEAPAKVVKHSKKQDENIVVNKFKPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEG 60
Query: 114 EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE 173
           EVPY+EGQSIG++ DG+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTN+ GE
Sbjct: 61  EVPYREGQSIGIVPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGE 120
Query: 174 IVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233
           +VKGVCSNFLCDLKPG+EVKITGPVGKEMLMP+DPNATVIML TGTGIAPFR FLWKMFF
Sbjct: 121 VVKGVCSNFLCDLKPGSEVKITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFF 180
Query: 234 EKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMY 293
           EKHEDY+FNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ N+KGEKMY
Sbjct: 181 EKHEDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMY 240
Query: 294 IQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKS 353
           IQTRMA+YA ELWELLKKDNT+VYMCGL+GMEKGIDDIMVSLAA DGIDW++YK+ LKK+
Sbjct: 241 IQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKA 300
Query: 354 EQWNVEVY 361
           EQWNVEVY
Sbjct: 301 EQWNVEVY 308

>pdb|1GAQ|A Chain A, Crystal Structure Of The Complex Between Ferredoxin And Ferredoxin-Nadp+ Reductase Length = 314

Iteration: 1
 Score =  561 bits (1447), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 263/314 (83%), Positives = 288/314 (91%), Gaps = 3/314 (0%)
Query: 51  VRAQVTT-EAPA--KVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHM 107
           +RAQ +  EAPA  K +KESKK EEGV+ N +KPK PY+GRCLLNTKITGDDAPGETWHM
Sbjct: 1   IRAQASAVEAPATAKAKKESKKQEEGVVTNLYKPKEPYVGRCLLNTKITGDDAPGETWHM 60
Query: 108 VFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 167
           VFSTEG++PY+EGQSIGVIADGVDKN KPHK+RLYSIASSA+GDFGDSKTVSLCVKRL+Y
Sbjct: 61  VFSTEGKIPYREGQSIGVIADGVDKNGKPHKVRLYSIASSAIGDFGDSKTVSLCVKRLIY 120
Query: 168 TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGF 227
           TN+ GEIVKGVCSNFLCDL+PG  V+ITGPVGKEMLMP+DPNAT+IMLATGTGIAPFR F
Sbjct: 121 TNDAGEIVKGVCSNFLCDLQPGDNVQITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSF 180
Query: 228 LWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNE 287
           LWKMFFEKH+DYKFNGL WLFLGVPTSSSLLYKEEF KMKE+APENFR+D+AVSREQ N 
Sbjct: 181 LWKMFFEKHDDYKFNGLGWLFLGVPTSSSLLYKEEFGKMKERAPENFRVDYAVSREQTNA 240
Query: 288 KGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYK 347
            GE+MYIQTRMAEY  ELWELLKKDNTYVYMCGL+GMEKGIDDIMVSLA  DGIDW DYK
Sbjct: 241 AGERMYIQTRMAEYKEELWELLKKDNTYVYMCGLKGMEKGIDDIMVSLAEKDGIDWFDYK 300
Query: 348 KQLKKSEQWNVEVY 361
           KQLK+ +QWNVEVY
Sbjct: 301 KQLKRGDQWNVEVY 314

>pdb|4AF6|A Chain A, Pea Fnr L268v Mutant Length = 308

Iteration: 1
 Score =  561 bits (1447), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 271/308 (87%), Positives = 294/308 (95%)
Query: 54  QVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG 113
           QVTTEAPAKV K SKK +E ++VNKFKPK PY+GRCLLNTKITGDDAPGETWHMVFSTEG
Sbjct: 1   QVTTEAPAKVVKHSKKQDENIVVNKFKPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEG 60
Query: 114 EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE 173
           EVPY+EGQSIG++ DG+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTN+ GE
Sbjct: 61  EVPYREGQSIGIVPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGE 120
Query: 174 IVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233
           +VKGVCSNFLCDLKPG+EVKITGPVGKEMLMP+DPNATVIML TGTGIAPFR FLWKMFF
Sbjct: 121 VVKGVCSNFLCDLKPGSEVKITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFF 180
Query: 234 EKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMY 293
           EKHEDY+FNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ N+KGEKMY
Sbjct: 181 EKHEDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMY 240
Query: 294 IQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKS 353
           IQTRMA+YA ELWELLKKDNT+VYMCG++GMEKGIDDIMVSLAA DGIDW++YK+ LKK+
Sbjct: 241 IQTRMAQYAEELWELLKKDNTFVYMCGVKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKA 300
Query: 354 EQWNVEVY 361
           EQWNVEVY
Sbjct: 301 EQWNVEVY 308

>pdb|1QGA|A Chain A, Pea Fnr Y308w Mutant In Complex With Nadp+ Length = 308

Iteration: 1
 Score =  561 bits (1445), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 271/308 (87%), Positives = 294/308 (95%)
Query: 54  QVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG 113
           QVTTEAPAKV K SKK +E ++VNKFKPK PY+GRCLLNTKITGDDAPGETWHMVFSTEG
Sbjct: 1   QVTTEAPAKVVKHSKKQDENIVVNKFKPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEG 60
Query: 114 EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE 173
           EVPY+EGQSIG++ DG+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTN+ GE
Sbjct: 61  EVPYREGQSIGIVPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGE 120
Query: 174 IVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233
           +VKGVCSNFLCDLKPG+EVKITGPVGKEMLMP+DPNATVIML TGTGIAPFR FLWKMFF
Sbjct: 121 VVKGVCSNFLCDLKPGSEVKITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFF 180
Query: 234 EKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMY 293
           EKHEDY+FNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ N+KGEKMY
Sbjct: 181 EKHEDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMY 240
Query: 294 IQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKS 353
           IQTRMA+YA ELWELLKKDNT+VYMCGL+GMEKGIDDIMVSLAA DGIDW++YK+ LKK+
Sbjct: 241 IQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKA 300
Query: 354 EQWNVEVY 361
           EQWNVEV+
Sbjct: 301 EQWNVEVW 308

>pdb|1QFY|A Chain A, Pea Fnr Y308s Mutant In Complex With Nadp+ Length = 308

Iteration: 1
 Score =  560 bits (1443), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 271/307 (88%), Positives = 293/307 (95%)
Query: 54  QVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG 113
           QVTTEAPAKV K SKK +E ++VNKFKPK PY+GRCLLNTKITGDDAPGETWHMVFSTEG
Sbjct: 1   QVTTEAPAKVVKHSKKQDENIVVNKFKPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEG 60
Query: 114 EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE 173
           EVPY+EGQSIG++ DG+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTN+ GE
Sbjct: 61  EVPYREGQSIGIVPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGE 120
Query: 174 IVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233
           +VKGVCSNFLCDLKPG+EVKITGPVGKEMLMP+DPNATVIML TGTGIAPFR FLWKMFF
Sbjct: 121 VVKGVCSNFLCDLKPGSEVKITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFF 180
Query: 234 EKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMY 293
           EKHEDY+FNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ N+KGEKMY
Sbjct: 181 EKHEDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMY 240
Query: 294 IQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKS 353
           IQTRMA+YA ELWELLKKDNT+VYMCGL+GMEKGIDDIMVSLAA DGIDW++YK+ LKK+
Sbjct: 241 IQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKA 300
Query: 354 EQWNVEV 360
           EQWNVEV
Sbjct: 301 EQWNVEV 307

>pdb|4AF7|A Chain A, Pea Fnr C266m Mutant Length = 308

Iteration: 1
 Score =  559 bits (1440), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 271/308 (87%), Positives = 293/308 (95%)
Query: 54  QVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG 113
           QVTTEAPAKV K SKK +E ++VNKFKPK PY+GRCLLNTKITGDDAPGETWHMVFSTEG
Sbjct: 1   QVTTEAPAKVVKHSKKQDENIVVNKFKPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEG 60
Query: 114 EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE 173
           EVPY+EGQSIG++ DG+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTN+ GE
Sbjct: 61  EVPYREGQSIGIVPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGE 120
Query: 174 IVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233
           +VKGVCSNFLCDLKPG+EVKITGPVGKEMLMP+DPNATVIML TGTGIAPFR FLWKMFF
Sbjct: 121 VVKGVCSNFLCDLKPGSEVKITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFF 180
Query: 234 EKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMY 293
           EKHEDY+FNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ N+KGEKMY
Sbjct: 181 EKHEDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMY 240
Query: 294 IQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKS 353
           IQTRMA+YA ELWELLKKDNT+VYM GL+GMEKGIDDIMVSLAA DGIDW++YK+ LKK+
Sbjct: 241 IQTRMAQYAEELWELLKKDNTFVYMMGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKA 300
Query: 354 EQWNVEVY 361
           EQWNVEVY
Sbjct: 301 EQWNVEVY 308

>pdb|3VO2|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+ Reductase Iii Length = 310

Iteration: 1
 Score =  555 bits (1431), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 260/307 (84%), Positives = 279/307 (90%)
Query: 55  VTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE 114
            T  A A   K SKK +EG++ NK+KPK PY+GRCL NT+ITGDDAPGETWHMVFSTEGE
Sbjct: 4   TTETAAAGPAKTSKKQDEGLVTNKYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEGE 63
Query: 115 VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEI 174
           +PY+EGQSIG+IADG DKN KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN+ GEI
Sbjct: 64  IPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEI 123
Query: 175 VKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFE 234
           VKGVCSNFLCDLKPGA+VKITGPVGKEMLMP+DPNATVIMLATGTGIAPFR FLWKMF E
Sbjct: 124 VKGVCSNFLCDLKPGADVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFLE 183
Query: 235 KHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYI 294
           +HEDYKF+GLAWLFLGVPTS SLLYKEE EKMKE AP+NFRLDFAVSREQ N  GEKMYI
Sbjct: 184 EHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYI 243
Query: 295 QTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSE 354
           QTRMAEY  ELWELLKKDNTYVYMCGL+GMEKGIDDIM++LAA DGIDW+ YKKQLKK E
Sbjct: 244 QTRMAEYREELWELLKKDNTYVYMCGLKGMEKGIDDIMLNLAAKDGIDWMQYKKQLKKGE 303
Query: 355 QWNVEVY 361
           QWNVEVY
Sbjct: 304 QWNVEVY 310

>pdb|1FNB|A Chain A, Refined Crystal Structure Of Spinach Ferredoxin Reductase At 1.7 Angstroms Resolution: Oxidized, Reduced, And 2'- Phospho-5'-Amp Bound States Length = 314

Iteration: 1
 Score =  555 bits (1430), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 267/313 (85%), Positives = 293/313 (93%)
Query: 49  VSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMV 108
           ++   +    APAKVEK SKKMEEG+ VNKFKPKTPY+GRCLLNTKITGDDAPGETWHMV
Sbjct: 2   IASDVEAPPPAPAKVEKHSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMV 61
Query: 109 FSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT 168
           FS EGE+PY+EGQS+GVI DG DKN KPHKLRLYSIASSALGDFGD+K+VSLCVKRL+YT
Sbjct: 62  FSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYT 121
Query: 169 NENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFL 228
           N+ GE +KGVCSNFLCDLKPGAEVK+TGPVGKEMLMP+DPNAT+IML TGTGIAPFR FL
Sbjct: 122 NDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 229 WKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEK 288
           WKMFFEKH+DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP+NFRLDFAVSREQ NEK
Sbjct: 182 WKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEK 241
Query: 289 GEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKK 348
           GEKMYIQTRMA+YA ELWE+LKKDNTYVYMCGL+GMEKGIDDIMVSLAA +GIDW++YK+
Sbjct: 242 GEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKR 301
Query: 349 QLKKSEQWNVEVY 361
           QLKK+EQWNVEVY
Sbjct: 302 QLKKAEQWNVEVY 314

>pdb|1BX1|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312q Length = 314

Iteration: 1
 Score =  552 bits (1423), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 265/313 (84%), Positives = 292/313 (93%)
Query: 49  VSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMV 108
           ++   +    APAKVEK SKKMEEG+ VNKFKPKTPY+GRCLLNTKITGDDAPGETWHMV
Sbjct: 2   IASDVEAPPPAPAKVEKHSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMV 61
Query: 109 FSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT 168
           FS EGE+PY+EGQS+GVI DG DKN KPHKLRLYSIASSALGDFGD+K+VSLCVKRL+YT
Sbjct: 62  FSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYT 121
Query: 169 NENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFL 228
           N+ GE +KGVCSNFLCDLKPGAEVK+TGPVGKEMLMP+DPNAT+IML TGTGIAPFR FL
Sbjct: 122 NDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 229 WKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEK 288
           WKMFFEKH+DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP+NFRLDFAVSREQ NEK
Sbjct: 182 WKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEK 241
Query: 289 GEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKK 348
           GEKMYIQTRMA+YA ELWE+LKKDNTY YMCGL+GMEKGIDDIMVSLAA +GIDW++YK+
Sbjct: 242 GEKMYIQTRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKR 301
Query: 349 QLKKSEQWNVEVY 361
           QLKK+EQWNV+VY
Sbjct: 302 QLKKAEQWNVQVY 314

>pdb|1FRQ|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312a Length = 314

Iteration: 1
 Score =  551 bits (1421), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 265/313 (84%), Positives = 291/313 (92%)
Query: 49  VSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMV 108
           ++   +    APAKVEK SKKMEEG+ VNKFKPKTPY+GRCLLNTKITGDDAPGETWHMV
Sbjct: 2   IASDVEAPPPAPAKVEKHSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMV 61
Query: 109 FSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT 168
           FS EGE+PY+EGQS+GVI DG DKN KPHKLRLYSIASSALGDFGD+K+VSLCVKRL+YT
Sbjct: 62  FSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYT 121
Query: 169 NENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFL 228
           N+ GE +KGVCSNFLCDLKPGAEVK+TGPVGKEMLMP+DPNAT+IML TGTGIAPFR FL
Sbjct: 122 NDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 229 WKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEK 288
           WKMFFEKH+DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP+NFRLDFAVSREQ NEK
Sbjct: 182 WKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEK 241
Query: 289 GEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKK 348
           GEKMYIQTRMA+YA ELWE+LKKDNTY YMCGL+GMEKGIDDIMVSLAA +GIDW++YK+
Sbjct: 242 GEKMYIQTRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKR 301
Query: 349 QLKKSEQWNVEVY 361
           QLKK+EQWNV VY
Sbjct: 302 QLKKAEQWNVAVY 314

>pdb|1FRN|A Chain A, The Involvement Of Ser96 In The Catalytic Mechanism Of Ferredoxin-Nadp+ Reductase: Structure-Function Relationship As Studied By Site-Directed Mutagenesis And X- Ray Crystallography Length = 314

Iteration: 1
 Score =  551 bits (1419), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 265/313 (84%), Positives = 291/313 (92%)
Query: 49  VSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMV 108
           ++   +    APAKVEK SKKMEEG+ VNKFKPKTPY+GRCLLNTKITGDDAPGETWHMV
Sbjct: 2   IASDVEAPPPAPAKVEKHSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMV 61
Query: 109 FSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT 168
           FS EGE+PY+EGQS+GVI DG DKN KPHKLRLY IASSALGDFGD+K+VSLCVKRL+YT
Sbjct: 62  FSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYVIASSALGDFGDAKSVSLCVKRLIYT 121
Query: 169 NENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFL 228
           N+ GE +KGVCSNFLCDLKPGAEVK+TGPVGKEMLMP+DPNAT+IML TGTGIAPFR FL
Sbjct: 122 NDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 229 WKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEK 288
           WKMFFEKH+DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP+NFRLDFAVSREQ NEK
Sbjct: 182 WKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEK 241
Query: 289 GEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKK 348
           GEKMYIQTRMA+YA ELWE+LKKDNTY YMCGL+GMEKGIDDIMVSLAA +GIDW++YK+
Sbjct: 242 GEKMYIQTRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKR 301
Query: 349 QLKKSEQWNVEVY 361
           QLKK+EQWNVEVY
Sbjct: 302 QLKKAEQWNVEVY 314

>pdb|1BX0|A Chain A, Ferredoxin:nadp+ Oxidoreductase (Ferredoxin Reductase) Mutant E312l Length = 314

Iteration: 1
 Score =  550 bits (1418), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 265/313 (84%), Positives = 291/313 (92%)
Query: 49  VSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMV 108
           ++   +    APAKVEK SKKMEEG+ VNKFKPKTPY+GRCLLNTKITGDDAPGETWHMV
Sbjct: 2   IASDVEAPPPAPAKVEKHSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMV 61
Query: 109 FSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT 168
           FS EGE+PY+EGQS+GVI DG DKN KPHKLRLYSIASSALGDFGD+K+VSLCVKRL+YT
Sbjct: 62  FSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYT 121
Query: 169 NENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFL 228
           N+ GE +KGVCSNFLCDLKPGAEVK+TGPVGKEMLMP+DPNAT+IML TGTGIAPFR FL
Sbjct: 122 NDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFL 181
Query: 229 WKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEK 288
           WKMFFEKH+DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP+NFRLDFAVSREQ NEK
Sbjct: 182 WKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEK 241
Query: 289 GEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKK 348
           GEKMYIQTRMA+YA ELWE+LKKDNTY YMCGL+GMEKGIDDIMVSLAA +GIDW++YK+
Sbjct: 242 GEKMYIQTRMAQYAVELWEMLKKDNTYFYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKR 301
Query: 349 QLKKSEQWNVEVY 361
           QLKK+EQWNV VY
Sbjct: 302 QLKKAEQWNVLVY 314

>pdb|1SM4|A Chain A, Crystal Structure Analysis Of The Ferredoxin-Nadp+ Reductase From Paprika Length = 296

Iteration: 1
 Score =  544 bits (1401), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/295 (90%), Positives = 281/295 (95%)
Query: 67  SKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVI 126
           SKK +EGV+VNKF+PK PYIGRCLLNTKITGDDAPGETWHMVFSTEGE+PY+EGQSIGVI
Sbjct: 2   SKKQDEGVVVNKFRPKEPYIGRCLLNTKITGDDAPGETWHMVFSTEGEIPYREGQSIGVI 61
Query: 127 ADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDL 186
           ADGVD N KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN+ GE VKGVCSNFLCDL
Sbjct: 62  ADGVDANGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDKGEEVKGVCSNFLCDL 121
Query: 187 KPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAW 246
           KPGA+VKITGPVGKEMLMP+DPNATVIML TGTGIAPFR FLWKMFFEKH+DYKFNGLAW
Sbjct: 122 KPGADVKITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAW 181
Query: 247 LFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELW 306
           LFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ NEKGEKMYIQTRMA+YA ELW
Sbjct: 182 LFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQTNEKGEKMYIQTRMAQYAEELW 241
Query: 307 ELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
            LLKKDNT+VYMCGL+GME+GIDDIM SLAA +GIDW DYKKQLKK+EQWNVEVY
Sbjct: 242 TLLKKDNTFVYMCGLKGMEQGIDDIMSSLAAKEGIDWADYKKQLKKAEQWNVEVY 296

>pdb|2XNC|A Chain A, Crystal Structure Of An Engineered Ferredoxin Nadp Reductase (Fnr) From Pisum Sativum Length = 315

Iteration: 1
 Score =  543 bits (1400), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 267/319 (83%), Positives = 290/319 (90%), Gaps = 9/319 (2%)
Query: 43  STGGRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPG 102
           + G R+   RAQVTTEAPAKV K SKK +E ++VNKFKPK PY+GRCLLNTKITGDDAPG
Sbjct: 5   AAGRRIPGYRAQVTTEAPAKVVKHSKKQDENIVVNKFKPKEPYVGRCLLNTKITGDDAPG 64
Query: 103 ETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV 162
           ETWHMVFSTEGEVPY+EGQSIG++ DG+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCV
Sbjct: 65  ETWHMVFSTEGEVPYREGQSIGIVPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCV 124
Query: 163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIA 222
           KR         +  GVCSNFLCDLKPG+EVKITGPVGKEMLMP+DPNATVIML TGTGIA
Sbjct: 125 KR---------VPDGVCSNFLCDLKPGSEVKITGPVGKEMLMPKDPNATVIMLGTGTGIA 175
Query: 223 PFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR 282
           PFR FLWKMFFEKHEDY+FNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR
Sbjct: 176 PFRSFLWKMFFEKHEDYQFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR 235
Query: 283 EQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGID 342
           EQ N+KGEKMYIQTRMA+YA ELWELLKKDNT+VYMCGL+GMEKGIDDIMVSLAA DGID
Sbjct: 236 EQVNDKGEKMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGID 295
Query: 343 WLDYKKQLKKSEQWNVEVY 361
           W++YK+ LKK+EQWNVEVY
Sbjct: 296 WIEYKRTLKKAEQWNVEVY 314

>pdb|3MHP|A Chain A, Fnr-Recruitment To The Thylakoid Length = 296

Iteration: 1
 Score =  542 bits (1396), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 261/295 (88%), Positives = 283/295 (95%)
Query: 67  SKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVI 126
           SKK +E ++VNKFKPK PY+GRCLLNTKITGDDAPGETWHMVFSTEGEVPY+EGQSIG++
Sbjct: 1   SKKQDENIVVNKFKPKEPYVGRCLLNTKITGDDAPGETWHMVFSTEGEVPYREGQSIGIV 60
Query: 127 ADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDL 186
            DG+DKN KPHKLRLYSIASSA+GDFGDSKTVSLCVKRLVYTN+ GE+VKGVCSNFLCDL
Sbjct: 61  PDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNDAGEVVKGVCSNFLCDL 120
Query: 187 KPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAW 246
           KPG+EVKITGPVGKEMLMP+DPNATVIML TGTGIAPFR FLWKMFFEKHEDY+FNGLAW
Sbjct: 121 KPGSEVKITGPVGKEMLMPKDPNATVIMLGTGTGIAPFRSFLWKMFFEKHEDYQFNGLAW 180
Query: 247 LFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELW 306
           LFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ N+KGEKMYIQTRMA+YA ELW
Sbjct: 181 LFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQVNDKGEKMYIQTRMAQYAEELW 240
Query: 307 ELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           ELLKKDNT+VYMCGL+GMEKGIDDIMVSLAA DGIDW++YK+ LKK+EQWNVEVY
Sbjct: 241 ELLKKDNTFVYMCGLKGMEKGIDDIMVSLAAKDGIDWIEYKRTLKKAEQWNVEVY 295

>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase Length = 402

Iteration: 1
 Score =  356 bits (913), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 173/338 (51%), Positives = 241/338 (71%), Gaps = 21/338 (6%)
Query: 45  GGRVVSVR-----AQVTTE-------------APAKVEKESKKMEEGVIVNKFKPKTPYI 86
           GG++VS+R     AQ+ +E             A +      K  +  V VN ++PKTP++
Sbjct: 65  GGKIVSIRPAEDAAQIVSEGQSSAQASAQSPMASSTKIVHPKTTDTSVPVNIYRPKTPFL 124
Query: 87  GRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIA 145
           G+C+ N ++  +   G   H+ F  +EG++ Y EGQSIG+I  G DKN KPHKLRLYSIA
Sbjct: 125 GKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIA 184
Query: 146 SSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFLCDLKPGAE-VKITGPVGKEML 203
           S+  GD  D+KTVSLCV++L Y + E+GE V GVCS +LC+L  G + VKITGPVGKEML
Sbjct: 185 STRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEML 244
Query: 204 MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEF 263
           +P D +ATV+MLATGTGIAPFR FLW+MF E+HEDYKF G AWL  GVP ++++LYK++F
Sbjct: 245 LPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDF 304
Query: 264 EKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG 323
           EKM  + P+NFRL +A+SREQK   G K+Y+Q+R++EYA+EL+E+++K NT+VYMCGL+G
Sbjct: 305 EKMAAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELFEMIQKPNTHVYMCGLKG 364
Query: 324 MEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           M+  ID+   + A   G++W + ++ +KK  +W+VEVY
Sbjct: 365 MQPPIDETFTAEAEKRGLNWEEMRRSMKKEHRWHVEVY 402

>pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase Complex Length = 303

Iteration: 1
 Score =  335 bits (858), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 162/302 (53%), Positives = 220/302 (72%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 2   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 61
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 62  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 121
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 122 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 181
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 182 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 241
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A+ELW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 242 EHADELWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 301
Query: 360 VY 361
            Y
Sbjct: 302 TY 303

>pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 2.25 Angstroms Length = 304

Iteration: 1
 Score =  334 bits (856), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 161/302 (53%), Positives = 221/302 (73%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 3   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 62
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 63  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 122
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 123 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 182
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 183 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 242
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K + T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 243 EHADQLWQLIKNEKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 302
Query: 360 VY 361
            Y
Sbjct: 303 TY 304

>pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms Length = 303

Iteration: 1
 Score =  333 bits (855), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 161/302 (53%), Positives = 220/302 (72%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 2   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 61
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 62  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 121
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 122 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 181
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 182 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 241
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 242 EHADQLWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 301
Query: 360 VY 361
            Y
Sbjct: 302 TY 303

>pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By Cocrystallization Length = 304

Iteration: 1
 Score =  333 bits (854), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 161/302 (53%), Positives = 220/302 (72%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 3   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 62
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 63  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 122
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 123 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 182
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 183 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 242
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 243 EHADQLWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 302
Query: 360 VY 361
            Y
Sbjct: 303 TY 304

>pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By Phe (Y303f) Length = 303

Iteration: 1
 Score =  333 bits (853), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 161/302 (53%), Positives = 220/302 (72%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 2   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 61
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 62  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 121
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 122 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 181
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 182 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 241
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A+ELW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 242 EHADELWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 301
Query: 360 VY 361
            +
Sbjct: 302 TF 303

>pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Arg (K75r) Length = 304

Iteration: 1
 Score =  332 bits (852), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 160/302 (52%), Positives = 220/302 (72%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 3   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 62
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP +LRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 63  IIPPGVDKNGKPERLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 122
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 123 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 182
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 183 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 242
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 243 EHADQLWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 302
Query: 360 VY 361
            Y
Sbjct: 303 TY 304

>pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Gln (K75q) Length = 304

Iteration: 1
 Score =  332 bits (851), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 160/302 (52%), Positives = 220/302 (72%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 3   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 62
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP +LRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 63  IIPPGVDKNGKPEQLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 122
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 123 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 182
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 183 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 242
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 243 EHADQLWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 302
Query: 360 VY 361
            Y
Sbjct: 303 TY 304

>pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72 Replaced By Glu (k72e) Length = 304

Iteration: 1
 Score =  332 bits (850), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 160/302 (52%), Positives = 220/302 (72%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 3   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 62
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN +P KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 63  IIPPGVDKNGEPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 122
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 123 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 182
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 183 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 242
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 243 EHADQLWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 302
Query: 360 VY 361
            Y
Sbjct: 303 TY 304

>pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139 Replaced By Lys (E139k) Length = 303

Iteration: 1
 Score =  332 bits (850), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 160/302 (52%), Positives = 220/302 (72%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 2   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 61
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 62  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 121
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGK+ML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 122 THIEPGSEVKITGPVGKKMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 181
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 182 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 241
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 242 EHADQLWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 301
Query: 360 VY 361
            Y
Sbjct: 302 TY 303

>pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Ser (K75s) Length = 304

Iteration: 1
 Score =  331 bits (849), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 160/302 (52%), Positives = 219/302 (72%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 3   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 62
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP  LRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 63  IIPPGVDKNGKPESLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 122
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 123 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 182
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 183 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 242
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 243 EHADQLWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 302
Query: 360 VY 361
            Y
Sbjct: 303 TY 304

>pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A) Length = 304

Iteration: 1
 Score =  331 bits (848), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 160/302 (52%), Positives = 219/302 (72%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 3   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 62
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 63  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 122
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 123 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 182
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 183 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 242
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+V 
Sbjct: 243 EHADQLWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVA 302
Query: 360 VY 361
            Y
Sbjct: 303 TY 304

>pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W) Length = 304

Iteration: 1
 Score =  331 bits (848), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 160/302 (52%), Positives = 220/302 (72%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 3   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 62
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 63  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 122
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 123 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 182
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 183 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 242
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 243 EHADQLWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 302
Query: 360 VY 361
            +
Sbjct: 303 TW 304

>pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Length = 304

Iteration: 1
 Score =  331 bits (848), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 160/301 (53%), Positives = 219/301 (72%), Gaps = 6/301 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 3   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 62
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 63  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 122
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 123 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 182
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 183 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 242
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 243 EHADQLWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 302
Query: 360 V 360
Sbjct: 303 T 303

>pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By Pro (L263p) Length = 303

Iteration: 1
 Score =  330 bits (847), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 160/302 (52%), Positives = 219/302 (72%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 2   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 61
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 62  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 121
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 122 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 181
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 182 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 241
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CG RGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 242 EHADQLWQLIKNQKTHTYICGPRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 301
Query: 360 VY 361
            Y
Sbjct: 302 TY 303

>pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By Glu (K75e) Length = 295

Iteration: 1
 Score =  330 bits (846), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 159/294 (54%), Positives = 217/294 (73%), Gaps = 6/294 (2%)
Query: 74  VIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIGVIADGVDK 132
           V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG+I  GVDK
Sbjct: 2   VPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK 61
Query: 133 NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFLCDLKPGAE 191
           N KP +LRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L  ++PG+E
Sbjct: 62  NGKPEELRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE 121
Query: 192 VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDYKFNGLAWL 247
           VKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y+F G +WL
Sbjct: 122 VKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWL 181
Query: 248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWE 307
             GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+AE+A++LW+
Sbjct: 182 VFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQ 241
Query: 308 LLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE Y
Sbjct: 242 LIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 295

>pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By Leu (V136l) Length = 295

Iteration: 1
 Score =  330 bits (846), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 159/294 (54%), Positives = 217/294 (73%), Gaps = 6/294 (2%)
Query: 74  VIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIGVIADGVDK 132
           V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG+I  GVDK
Sbjct: 2   VPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK 61
Query: 133 NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFLCDLKPGAE 191
           N KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L  ++PG+E
Sbjct: 62  NGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE 121
Query: 192 VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDYKFNGLAWL 247
           VKITGP+GKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y+F G +WL
Sbjct: 122 VKITGPLGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWL 181
Query: 248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWE 307
             GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+AE+A++LW+
Sbjct: 182 VFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQ 241
Query: 308 LLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE Y
Sbjct: 242 LIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 295

>pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By Glu (r264e) Length = 295

Iteration: 1
 Score =  329 bits (844), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 159/294 (54%), Positives = 216/294 (73%), Gaps = 6/294 (2%)
Query: 74  VIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIGVIADGVDK 132
           V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG+I  GVDK
Sbjct: 2   VPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK 61
Query: 133 NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFLCDLKPGAE 191
           N KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L  ++PG+E
Sbjct: 62  NGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE 121
Query: 192 VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDYKFNGLAWL 247
           VKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y+F G +WL
Sbjct: 122 VKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWL 181
Query: 248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWE 307
             GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+AE+A++LW+
Sbjct: 182 VFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQ 241
Query: 308 LLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           L+K   T+ Y+CGL GME+GID  + + AA +G+ W DY+K LKK+ +W+VE Y
Sbjct: 242 LIKNQKTHTYICGLEGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 295

>pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed With Nadp Length = 303

Iteration: 1
 Score =  329 bits (843), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 159/301 (52%), Positives = 218/301 (72%), Gaps = 6/301 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 2   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 61
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+G  V GVCS +L
Sbjct: 62  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGATVYGVCSTYL 121
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y
Sbjct: 122 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEY 181
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 182 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 241
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 242 EHADQLWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 301
Query: 360 V 360
Sbjct: 302 T 302

>pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly And Ala 160 Replaced By Thr (T155g-A160t) Length = 303

Iteration: 1
 Score =  329 bits (843), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 159/302 (52%), Positives = 218/302 (72%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 2   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 61
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 62  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 121
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLA GTGI P R +LW+MF +     + +Y
Sbjct: 122 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEY 181
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 182 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 241
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 242 EHADQLWQLIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 301
Query: 360 VY 361
            Y
Sbjct: 302 TY 303

>pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly (T155g) Length = 295

Iteration: 1
 Score =  329 bits (843), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 159/294 (54%), Positives = 216/294 (73%), Gaps = 6/294 (2%)
Query: 74  VIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIGVIADGVDK 132
           V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG+I  GVDK
Sbjct: 2   VPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK 61
Query: 133 NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFLCDLKPGAE 191
           N KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L  ++PG+E
Sbjct: 62  NGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE 121
Query: 192 VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDYKFNGLAWL 247
           VKITGPVGKEML+P DP A VIMLA GTGIAP R +LW+MF +     + +Y+F G +WL
Sbjct: 122 VKITGPVGKEMLLPDDPEANVIMLAGGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWL 181
Query: 248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWE 307
             GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+AE+A++LW+
Sbjct: 182 VFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQ 241
Query: 308 LLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE Y
Sbjct: 242 LIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 295

>pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By Asp (L78d) Length = 295

Iteration: 1
 Score =  328 bits (841), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 159/294 (54%), Positives = 216/294 (73%), Gaps = 6/294 (2%)
Query: 74  VIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIGVIADGVDK 132
           V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG+I  GVDK
Sbjct: 2   VPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK 61
Query: 133 NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFLCDLKPGAE 191
           N KP KLR YSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L  ++PG+E
Sbjct: 62  NGKPEKLRDYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE 121
Query: 192 VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDYKFNGLAWL 247
           VKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y+F G +WL
Sbjct: 122 VKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWL 181
Query: 248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWE 307
             GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+AE+A++LW+
Sbjct: 182 VFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQ 241
Query: 308 LLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE Y
Sbjct: 242 LIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 295

>pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro (T155g-A160t-L263p) Length = 304

Iteration: 1
 Score =  326 bits (836), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 158/302 (52%), Positives = 217/302 (71%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 3   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 62
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 63  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 122
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLA GTGI P R +LW+MF +     + +Y
Sbjct: 123 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEY 182
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 183 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 242
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CG RGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 243 EHADQLWQLIKNQKTHTYICGPRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 302
Query: 360 VY 361
            Y
Sbjct: 303 TY 304

>pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By Asp And Leu 78 Mutated By Asp Length = 295

Iteration: 1
 Score =  325 bits (833), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 158/294 (53%), Positives = 215/294 (73%), Gaps = 6/294 (2%)
Query: 74  VIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIGVIADGVDK 132
           V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG+I  GVDK
Sbjct: 2   VPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK 61
Query: 133 NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFLCDLKPGAE 191
           N KP K R YSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L  ++PG+E
Sbjct: 62  NGKPEKDRDYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE 121
Query: 192 VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDYKFNGLAWL 247
           VKITGPVGKEML+P DP A VIMLATGTGIAP R +LW+MF +     + +Y+F G +WL
Sbjct: 122 VKITGPVGKEMLLPDDPEANVIMLATGTGIAPMRTYLWRMFKDAERAANPEYQFKGFSWL 181
Query: 248 FLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWE 307
             GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+AE+A++LW+
Sbjct: 182 VFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQ 241
Query: 308 LLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           L+K   T+ Y+CGLRGME+GID  + + AA +G+ W DY+K LKK+ +W+VE Y
Sbjct: 242 LIKNQKTHTYICGLRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 295

>pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s) Length = 304

Iteration: 1
 Score =  325 bits (833), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 158/301 (52%), Positives = 216/301 (71%), Gaps = 6/301 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 3   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 62
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 63  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 122
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLA GTGI P R +LW+MF +     + +Y
Sbjct: 123 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEY 182
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 183 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 242
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A+ELW+L+K   T+ Y+CG RGME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 243 EHADELWQLIKNQKTHTYICGPRGMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 302
Query: 360 V 360
Sbjct: 303 T 303

>pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro, Arg 264 Replaced By Pro And Gly 265 Replaced By Pro (T155g- A160t-L263p-R264p-G265p) Length = 304

Iteration: 1
 Score =  320 bits (820), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 156/302 (51%), Positives = 215/302 (71%), Gaps = 6/302 (1%)
Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F  T G + Y EGQSIG
Sbjct: 3   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 62
Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y + E+GE V GVCS +L
Sbjct: 63  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 122
Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK----HEDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLA GTGI P R +LW+MF +     + +Y
Sbjct: 123 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEY 182
Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 183 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 242
Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CG   ME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 243 EHADQLWQLIKNQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 302
Query: 360 VY 361
            Y
Sbjct: 303 TY 304

>pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms Length = 316

Iteration: 1
 Score =  290 bits (742), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 149/293 (50%), Positives = 193/293 (65%), Gaps = 8/293 (2%)
Query: 76  VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVD--KN 133
           +N +KPK P+    +    + G  APGET H+V    G VPY EGQS GVI  G +  K 
Sbjct: 25  LNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKP 84
Query: 134 AKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY----TNENGEIVKGVCSNFLCDLKPG 189
             P  +RLYSIAS+  GD  D +T SLCV+R VY    T +      GVCSNFLC+ KPG
Sbjct: 85  GAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPG 144
Query: 190 AEVKITGPVGKEMLMPR-DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLF 248
            ++++TGP GK ML+P  DPNAT IM+ATGTG+APFRG+L +MF E   +Y+F GLAWLF
Sbjct: 145 DKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLF 204
Query: 249 LGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL 308
           LGV  S SLLY EEF    ++ P+NFR D A+SREQKN  G KMY+Q ++ EY++E+++L
Sbjct: 205 LGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKL 264
Query: 309 LKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           L     ++Y CGL+GM  GI D +  +A   G  W     QLKK++QW+VEVY
Sbjct: 265 L-DGGAHIYFCGLKGMMPGIQDTLKKVAERRGESWDQKLAQLKKNKQWHVEVY 316

>pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms - Test Set Withheld Length = 311

Iteration: 1
 Score =  290 bits (742), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 149/293 (50%), Positives = 193/293 (65%), Gaps = 8/293 (2%)
Query: 76  VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVD--KN 133
           +N +KPK P+    +    + G  APGET H+V    G VPY EGQS GVI  G +  K 
Sbjct: 20  LNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKP 79
Query: 134 AKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY----TNENGEIVKGVCSNFLCDLKPG 189
             P  +RLYSIAS+  GD  D +T SLCV+R VY    T +      GVCSNFLC+ KPG
Sbjct: 80  GAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPG 139
Query: 190 AEVKITGPVGKEMLMPR-DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLF 248
            ++++TGP GK ML+P  DPNAT IM+ATGTG+APFRG+L +MF E   +Y+F GLAWLF
Sbjct: 140 DKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLF 199
Query: 249 LGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL 308
           LGV  S SLLY EEF    ++ P+NFR D A+SREQKN  G KMY+Q ++ EY++E+++L
Sbjct: 200 LGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKL 259
Query: 309 LKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           L     ++Y CGL+GM  GI D +  +A   G  W     QLKK++QW+VEVY
Sbjct: 260 L-DGGAHIYFCGLKGMMPGIQDTLKKVAERRGESWDQKLAQLKKNKQWHVEVY 311

>pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+ Reductase From Maize Root At 1.05 Angstroms Length = 311

Iteration: 1
 Score =  287 bits (735), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 148/292 (50%), Positives = 192/292 (65%), Gaps = 8/292 (2%)
Query: 76  VNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVD--KN 133
           +N +KPK P+    +    + G  APGET H+V    G VPY EGQS GVI  G +  K 
Sbjct: 20  LNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKP 79
Query: 134 AKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY----TNENGEIVKGVCSNFLCDLKPG 189
             P  +RLYSIAS+  GD  D +T SLCV+R VY    T +      GVCSNFLC+ KPG
Sbjct: 80  GAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPG 139
Query: 190 AEVKITGPVGKEMLMPR-DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLF 248
            ++++TGP GK ML+P  DPNAT IM+ATGTG+APFRG+L +MF E   +Y+F GLAWLF
Sbjct: 140 DKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLF 199
Query: 249 LGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL 308
           LGV  S SLLY EEF    ++ P+NFR D A+SREQKN  G KMY+Q ++ EY++E+++L
Sbjct: 200 LGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKL 259
Query: 309 LKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEV 360
           L     ++Y CGL+GM  GI D +  +A   G  W     QLKK++QW+VEV
Sbjct: 260 L-DGGAHIYFCGLKGMMPGIQDTLKKVAERRGESWDQKLAQLKKNKQWHVEV 310

>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Length = 314

Iteration: 1
 Score =  156 bits (395), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/306 (34%), Positives = 160/306 (52%), Gaps = 24/306 (7%)
Query: 76  VNKFKPKTPYIGRCLLNTKITGDDAPGE---------TWHMVFSTEGEV-PYKEGQSIGV 125
           +N FK   PY  + + N  +T +   G+            +V + +    PY  GQS GV
Sbjct: 13  INLFKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIGQSGGV 72
Query: 126 IADGVDKNAKP-------HKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEI-VKG 177
           I  G D   K        + +RLYSIAS +         +   +KR    +ENG I  KG
Sbjct: 73  IPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKG 132
Query: 178 VCSNFLCDLKPGAEVKITGPVGKEMLMPR-DPNATVIMLATGTGIAPFRGFLWKMFFEKH 236
           VCSN++CDLKPG EV +TGP GK+ L+P  D +  ++ LATGTGIAPF G   ++   +H
Sbjct: 133 VCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELL--EH 190
Query: 237 EDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNE-KGEKMYIQ 295
           +  KF G   L  G P S  L+  +  + ++ K  +NF+L  A+SRE+KN   G +MYI 
Sbjct: 191 KLIKFTGNITLVYGAPYSDELVMMDYLKGLESKH-KNFKLITAISREEKNSFDGGRMYIS 249
Query: 296 TRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQ 355
            R+ E A  + ++L     +    G +GMEKG+ + +  ++ N G  + ++K  L+ + Q
Sbjct: 250 HRVREQAEAVKKILNGGGRFYICGGPKGMEKGVIEEIQKISGNTGT-YEEFKHHLEGAHQ 308
Query: 356 WNVEVY 361
             VE Y
Sbjct: 309 LFVETY 314

>pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With 2'p-Amp Length = 316

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 143/332 (43%), Gaps = 58/332 (17%)
Query: 71  EEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIA--D 128
           EE   +N +  K P   + +    +   ++P E +H+  +  G   Y EG + G+I   +
Sbjct: 2   EENNFINLYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGLFKYLEGHTCGIIPYYN 61
Query: 129 GVDKN----------------------------AKPHKLRLYSIASSALGDFGDSKTVSL 160
            +D N                             K    RLYSI+SS      + + +S+
Sbjct: 62  ELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSS-----NNMENLSV 116
Query: 161 CVKRLVY-TNENGEIVK--GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDP---NATVIM 214
            +K   Y   EN   +   G CS F+ +LK   ++ +TG  G    +P D    N   I 
Sbjct: 117 AIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHG-YFNLPNDAIQKNTNFIF 175
Query: 215 LATGTGIAPFRGFLWKMF-FEKHEDYKFN----GLAWLFLGVPTSSSLLYKEEFEKMKEK 269
           +ATGTGI+P+  FL K+F ++K+  Y  N    G   ++ GV    S+LY  E E  ++ 
Sbjct: 176 IATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKM 235
Query: 270 APENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGID 329
            P N  + +  S +Q N      Y+Q  + +   E   L       +Y+CGL+ +   + 
Sbjct: 236 YPNNINIHYVFSYKQ-NSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGLKSIRYKVM 294
Query: 330 DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           DI   L ++D  D        KK ++ +VEVY
Sbjct: 295 DI---LKSHDQFDE-------KKKKRVHVEVY 316

>pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With 2'p-Amp Length = 316

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 142/332 (42%), Gaps = 58/332 (17%)
Query: 71  EEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIA--D 128
           EE   +N +  K P   + +    +   ++P E +H+  +  G   Y EG + G+I   +
Sbjct: 2   EENNFINLYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGLFKYLEGHTCGIIPYYN 61
Query: 129 GVDKN----------------------------AKPHKLRLYSIASSALGDFGDSKTVSL 160
            +D N                             K    RLYSI+SS      + + +S+
Sbjct: 62  ELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSS-----NNMENLSV 116
Query: 161 CVKRLVY-TNENGEIVK--GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDP---NATVIM 214
            +K   Y   EN   +   G CS F+ +LK   ++ +TG  G    +P D    N   I 
Sbjct: 117 AIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGY-FNLPNDAIQKNTNFIF 175
Query: 215 LATGTGIAPFRGFLWKMF-FEKHEDYKFN----GLAWLFLGVPTSSSLLYKEEFEKMKEK 269
           +ATGTGI+P+  FL K+F ++K+  Y  N    G   ++ GV    S+LY  E E  ++ 
Sbjct: 176 IATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKM 235
Query: 270 APENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGID 329
            P N  + +  S +Q N      Y+Q  + +   E   L       +Y+CG + +   + 
Sbjct: 236 YPNNINIHYVFSYKQ-NSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGHKSIRYKVM 294
Query: 330 DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           DI   L ++D  D        KK ++ +VEVY
Sbjct: 295 DI---LKSHDQFDE-------KKKKRVHVEVY 316

>pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum In Complex With 2'p- Amp Length = 316

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 142/332 (42%), Gaps = 58/332 (17%)
Query: 71  EEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIA--D 128
           EE   +N +  K P   + +    +   ++P E +H+  +  G   Y EG + G+I   +
Sbjct: 2   EENNFINLYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGLFKYLEGHTCGIIPYYN 61
Query: 129 GVDKN----------------------------AKPHKLRLYSIASSALGDFGDSKTVSL 160
            +D N                             K    RLYSI+SS      + + +S+
Sbjct: 62  ELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSS-----NNMENLSV 116
Query: 161 CVKRLVY-TNENGEIVK--GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDP---NATVIM 214
            +K   Y   EN   +   G CS F+ +LK   ++ +TG  G    +P D    N   I 
Sbjct: 117 AIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHG-YFNLPNDAIQKNTNFIF 175
Query: 215 LATGTGIAPFRGFLWKMF-FEKHEDYKFN----GLAWLFLGVPTSSSLLYKEEFEKMKEK 269
           +ATGTGI+P+  FL K+F ++K+  Y  N    G   ++ GV    S+LY  E E  ++ 
Sbjct: 176 IATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKM 235
Query: 270 APENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGID 329
            P N  + +  S +Q N      Y+Q  + +   E   L       +Y+CG + +   + 
Sbjct: 236 YPNNINIHYVFSYKQ-NSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVM 294
Query: 330 DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           DI   L ++D  D        KK ++ +VEVY
Sbjct: 295 DI---LKSHDQFDE-------KKKKRVHVEVY 316

>pdb|1DDG|A Chain A, Crystal Structure Of Sir-Fp60 Length = 374

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 22/234 (9%)
Query: 135 KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVK 193
           +P   RLYSIASS   +  +   V++ V R    +  G    G  S+FL D ++   EV+
Sbjct: 156 RPLTPRLYSIASSQ-AEVENEVHVTVGVVRY---DVEGRARAGGASSFLADRVEEEGEVR 211
Query: 194 ITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPT 253
           +         +P +P   VIM+  GTGIAPFR F+     ++    +  G  WLF G P 
Sbjct: 212 VFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFM-----QQRAADEAPGKNWLFFGNPH 266
Query: 254 -SSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKD 312
            +   LY+ E+++  ++     R+D A SR+QK    EK+Y+Q ++ E   ELW  +  D
Sbjct: 267 FTEDFLYQVEWQRYVKEGVLT-RIDLAWSRDQK----EKVYVQDKLREQGAELWRWI-ND 320
Query: 313 NTYVYMCG-----LRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
             ++Y+CG      + +E+ + +++      D     ++  +L+   ++  +VY
Sbjct: 321 GAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 374

>pdb|3ES9|A Chain A, Nadph-Cytochrome P450 Reductase In An Open Conformation Length = 618

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 20/235 (8%)
Query: 138 KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGP 197
           + R YSIASS+        +V +C   + Y  ++G + KGV +++L   +P  E      
Sbjct: 392 QARYYSIASSSKVH---PNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRAL 448
Query: 198 V-----GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVP 252
           V       +  +P      VIM+  GTGIAPF GF+ +  + + E  K  G   L+ G  
Sbjct: 449 VPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLR-EQGKEVGETLLYYGCR 507
Query: 253 TSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK 311
            S    LY+EE  +  +      +L+ A SREQ +    K+Y+Q  +      LW+L+ +
Sbjct: 508 RSDEDYLYREELARFHKDGALT-QLNVAFSREQAH----KVYVQHLLKRDREHLWKLIHE 562
Query: 312 DNTYVYMCG-LRGMEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
              ++Y+CG  R M K +     DI+      +    +DY K+L    +++++V+
Sbjct: 563 GGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVW 617

>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450 Reductase: Prototype For Fmn-And Fad-Containing Enzymes Length = 615

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 20/235 (8%)
Query: 138 KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGP 197
           + R YSIASS+        +V +C   + Y  ++G + KGV +++L   +P  E      
Sbjct: 389 QARYYSIASSSKVH---PNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRAL 445
Query: 198 V-----GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVP 252
           V       +  +P      VIM+  GTGIAPF GF+ +  + + E  K  G   L+ G  
Sbjct: 446 VPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLR-EQGKEVGETLLYYGCR 504
Query: 253 TSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK 311
            S    LY+EE  +  +      +L+ A SREQ +    K+Y+Q  +      LW+L+ +
Sbjct: 505 RSDEDYLYREELARFHKDGALT-QLNVAFSREQAH----KVYVQHLLKRDREHLWKLIHE 559
Query: 312 DNTYVYMCG-LRGMEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
              ++Y+CG  R M K +     DI+      +    +DY K+L    +++++V+
Sbjct: 560 GGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVW 614

>pdb|1J9Z|A Chain A, Cypor-W677g Length = 622

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 20/234 (8%)
Query: 138 KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGP 197
           + R YSIASS+        +V +C   + Y  ++G + KGV +++L   +P  E      
Sbjct: 396 QARYYSIASSSKVH---PNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRAL 452
Query: 198 V-----GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVP 252
           V       +  +P      VIM+  GTGIAPF GF+ +  + + E  K  G   L+ G  
Sbjct: 453 VPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLR-EQGKEVGETLLYYGCR 511
Query: 253 TSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK 311
            S    LY+EE  +  +      +L+ A SREQ +    K+Y+Q  +      LW+L+ +
Sbjct: 512 RSDEDYLYREELARFHKDGALT-QLNVAFSREQAH----KVYVQHLLKRDREHLWKLIHE 566
Query: 312 DNTYVYMCG-LRGMEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEV 360
              ++Y+CG  R M K +     DI+      +    +DY K+L    +++++V
Sbjct: 567 GGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDV 620

>pdb|1JA0|A Chain A, Cypor-W677x Length = 620

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 20/234 (8%)
Query: 138 KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGP 197
           + R YSIASS+        +V +C   + Y  ++G + KGV +++L   +P  E      
Sbjct: 396 QARYYSIASSSKVH---PNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRAL 452
Query: 198 V-----GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVP 252
           V       +  +P      VIM+  GTGIAPF GF+ +  + + E  K  G   L+ G  
Sbjct: 453 VPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLR-EQGKEVGETLLYYGCR 511
Query: 253 TSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK 311
            S    LY+EE  +  +      +L+ A SREQ +    K+Y+Q  +      LW+L+ +
Sbjct: 512 RSDEDYLYREELARFHKDGALT-QLNVAFSREQAH----KVYVQHLLKRDREHLWKLIHE 566
Query: 312 DNTYVYMCG-LRGMEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEV 360
              ++Y+CG  R M K +     DI+      +    +DY K+L    +++++V
Sbjct: 567 GGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDV 620

>pdb|3FJO|A Chain A, Structure Of Chimeric Yh Cpr Length = 637

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 21/235 (8%)
Query: 138 KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGP 197
           + R YSIASS+        +V +C   + Y  + G I KGV +N+L   +P  E      
Sbjct: 412 QARYYSIASSSKVH---PNSVHICAVVVEYETKAGRINKGVATNWLRAKEPAGENGGRAL 468
Query: 198 V-----GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVP 252
           V       +  +P      VIM+  GTG+APF GF+ +  + + +  K  G   L+ G  
Sbjct: 469 VPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQG-KEVGETLLYYGCR 527
Query: 253 TSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK 311
            S    LY+EE  +         +L+ A SREQ +    K+Y+Q  + +    LW+L+ +
Sbjct: 528 RSDEDYLYREELAQFHRDGALT-QLNVAFSREQSH----KVYVQHLLKQDREHLWKLI-E 581
Query: 312 DNTYVYMCG-LRGMEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
              ++Y+CG  R M + +     DI+  L A +    +DY K+L    +++++V+
Sbjct: 582 GGAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 636

>pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH Domain) Length = 458

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/233 (29%), Positives = 113/233 (48%), Gaps = 21/233 (9%)
Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKP----GAEVKIT 195
           R YSIASS+        +V +C   + Y  + G I KGV +N+L   +P    G    + 
Sbjct: 235 RYYSIASSSKVH---PNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVP 291
Query: 196 GPVGKEML-MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS 254
             V K    +P      VIM+  GTG+APF GF+ +  + + +  K  G   L+ G   S
Sbjct: 292 MFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQG-KEVGETLLYYGCRRS 350
Query: 255 S-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDN 313
               LY+EE  +         +L+ A SREQ +    K+Y+Q  + +    LW+L+ +  
Sbjct: 351 DEDYLYREELAQFHRDGALT-QLNVAFSREQSH----KVYVQHLLKQDREHLWKLI-EGG 404
Query: 314 TYVYMCG-LRGMEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
            ++Y+CG  R M + +     DI+  L A +    +DY K+L    +++++V+
Sbjct: 405 AHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457

>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase Length = 618

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 114/235 (48%), Gaps = 21/235 (8%)
Query: 138 KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKP----GAEVK 193
           + R YSIASS+        +V +C   + Y  + G I KGV +N+L   +P    G    
Sbjct: 393 QARYYSIASSSKVH---PNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRAL 449
Query: 194 ITGPVGKEML-MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVP 252
           +   V K    +P      VIM+  GTG+APF GF+ +  + + +  K  G   L+ G  
Sbjct: 450 VPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQG-KEVGETLLYYGCR 508
Query: 253 TSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK 311
            S    LY+EE  +         +L+ A SREQ +    K+Y+Q  + +    LW+L++ 
Sbjct: 509 RSDEDYLYREELAQFHRDGALT-QLNVAFSREQSH----KVYVQHLLKQDREHLWKLIEG 563
Query: 312 DNTYVYMCG-LRGMEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
              ++Y+CG  R M + +     DI+  L A +    +DY K+L    +++++V+
Sbjct: 564 -GAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 617

>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase (R457h Mutant) Length = 618

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 21/231 (9%)
Query: 142 YSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPV--- 198
           YSIASS+        +V +C   + Y  + G I KGV +N+L   +P  E      V   
Sbjct: 397 YSIASSSKVH---PNSVHICAVVVEYETKAGRINKGVATNWLRAKEPAGENGGRALVPMF 453
Query: 199 --GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSS- 255
               +  +P      VIM+  GTG+APF GF+ +  + + +  K  G   L+ G   S  
Sbjct: 454 VRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQG-KEVGETLLYYGCRRSDE 512
Query: 256 SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTY 315
             LY+EE  +         +L+ A SREQ +    K+Y+Q  + +    LW+L++    +
Sbjct: 513 DYLYREELAQFHRDGALT-QLNVAFSREQSH----KVYVQHLLKQDREHLWKLIEG-GAH 566
Query: 316 VYMCG-LRGMEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           +Y+CG  R M + +     DI+  L A +    +DY K+L    +++++V+
Sbjct: 567 IYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 617

>pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase (FadNADPH DOMAIN And R457h Mutant) Length = 458

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 21/231 (9%)
Query: 142 YSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKP----GAEVKITGP 197
           YSIASS+        +V +C   + Y  + G I KGV +N+L   +P    G    +   
Sbjct: 237 YSIASSSKVH---PNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMF 293
Query: 198 VGKEML-MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSS- 255
           V K    +P      VIM+  GTG+APF GF+ +  + + +  K  G   L+ G   S  
Sbjct: 294 VRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQG-KEVGETLLYYGCRRSDE 352
Query: 256 SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTY 315
             LY+EE  +         +L+ A SREQ +    K+Y+Q  + +    LW+L+ +   +
Sbjct: 353 DYLYREELAQFHRDGALT-QLNVAFSREQSH----KVYVQHLLKQDREHLWKLI-EGGAH 406
Query: 316 VYMCG-LRGMEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           +Y+CG  R M + +     DI+  L A +    +DY K+L    +++++V+
Sbjct: 407 IYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457

>pdb|3OJX|A Chain A, Disulfide Crosslinked Cytochrome P450 Reductase Inactive Length = 622

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 111/235 (47%), Gaps = 20/235 (8%)
Query: 138 KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGP 197
           + R YSIASS+        +V +    + Y  ++G + KGV +++L   +P  E      
Sbjct: 396 QARYYSIASSSKVH---PNSVHITAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRAL 452
Query: 198 V-----GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVP 252
           V       +  +P      VIM+  GTGIAPF GF+ +  + + E  K  G   L+ G  
Sbjct: 453 VPMFVCKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLR-EQGKEVGETLLYYGAR 511
Query: 253 TSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK 311
            S    LY+EE  +  +      +L+ A SREQ +    K+Y+Q  +      LW+L+ +
Sbjct: 512 RSDEDYLYREELARFHKDGALT-QLNVAFSREQAH----KVYVQHLLKRDREHLWKLIHE 566
Query: 312 DNTYVYMCG-LRGMEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
              ++Y+CG  R M K +     DI+      +    +DY K+L    +++++V+
Sbjct: 567 GGAHIYVCGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLDVW 621

>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e Mutant) Length = 618

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 113/235 (48%), Gaps = 21/235 (8%)
Query: 138 KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKP----GAEVK 193
           + R YSIASS+        +V +C   + Y  + G I KG  +N+L   +P    G    
Sbjct: 393 QARYYSIASSSKVH---PNSVHICAVVVEYETKAGRINKGEATNWLRAKEPVGENGGRAL 449
Query: 194 ITGPVGKEML-MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVP 252
           +   V K    +P      VIM+  GTG+APF GF+ +  + + +  K  G   L+ G  
Sbjct: 450 VPMFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQG-KEVGETLLYYGCR 508
Query: 253 TSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK 311
            S    LY+EE  +         +L+ A SREQ +    K+Y+Q  + +    LW+L++ 
Sbjct: 509 RSDEDYLYREELAQFHRDGALT-QLNVAFSREQSH----KVYVQHLLKQDREHLWKLIEG 563
Query: 312 DNTYVYMCG-LRGMEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
              ++Y+CG  R M + +     DI+  L A +    +DY K+L    +++++V+
Sbjct: 564 -GAHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 617

>pdb|2QTL|A Chain A, Crystal Structure Of The Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 26/235 (11%)
Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLC-----DLKP------ 188
           R YS ASS+L   G    V   +   + T     + KGVC+ +L       L+P      
Sbjct: 292 RPYSCASSSLFHPGKLHFV-FNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASH 350
Query: 189 -------GAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLW--KMFFEKHEDY 239
                    ++ I         +P DP+  +IM+  GTGIAPF GFL   +   E+H D 
Sbjct: 351 EDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDG 410
Query: 240 KFNGLAWLFLGV-PTSSSLLYKEEFEK-MKEKAPENFRLDFAVSREQKNEKGEKMYIQTR 297
            F G  WLF G        L+++E    +K     + ++ F+       E+    Y+Q  
Sbjct: 411 NF-GAMWLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDN 469
Query: 298 MAEYANELWELLKKDNTYVYMCG-LRGMEKGIDDIMVSLAAND-GIDWLDYKKQL 350
           +  +  ++  +L ++N ++Y+CG  + M K + D +V + + + G++ L+  K L
Sbjct: 470 IQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTL 524

>pdb|2QTZ|A Chain A, Crystal Structure Of The Nadp+-Bound Fad-Containing Fnr-Like Module Of Human Methionine Synthase Reductase Length = 539

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 26/235 (11%)
Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLC-----DLKP------ 188
           R YS ASS+L   G    V   +   + T     + KGVC+ +L       L+P      
Sbjct: 292 RPYSCASSSLFHPGKLHFV-FNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASH 350
Query: 189 -------GAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLW--KMFFEKHEDY 239
                    ++ I         +P DP+  +IM+  GTGIAPF GFL   +   E+H D 
Sbjct: 351 EDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDG 410
Query: 240 KFNGLAWLFLGV-PTSSSLLYKEEFEK-MKEKAPENFRLDFAVSREQKNEKGEKMYIQTR 297
            F G  WLF G        L+++E    +K     + ++ F+       E+    Y+Q  
Sbjct: 411 NF-GAMWLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPAKYVQDN 469
Query: 298 MAEYANELWELLKKDNTYVYMCG-LRGMEKGIDDIMVSLAAND-GIDWLDYKKQL 350
           +  +  ++  +L ++N ++Y+CG  + M K + D +V + + + G++ L+  K L
Sbjct: 470 IQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTL 524

>pdb|1JA1|A Chain A, Cypor-Triple Mutant Length = 622

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 20/235 (8%)
Query: 138 KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGP 197
           + R Y+IASS+        +V +C   + Y  ++G + KGV +++L   +P  E      
Sbjct: 396 QARYYAIASSSKVH---PNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGRAL 452
Query: 198 V-----GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVP 252
           V       +  +P      VIM+  GTGIAPF GF+ +  + + E  K  G   L+ G  
Sbjct: 453 VPMFVRKSQFRLPFKSTTPVIMVGPGTGIAPFMGFIQERAWLR-EQGKEVGETLLYYGCR 511
Query: 253 TSS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK 311
            S    LY+EE  +  +      +L+ A SREQ +    K+Y+Q  +      LW+L+ +
Sbjct: 512 RSDEDYLYREELARFHKDGALT-QLNVAFSREQAH----KVYVQHLLKRDREHLWKLIHE 566
Query: 312 DNTYVYMCG-LRGMEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
              ++Y+ G  R M K +     DI+      +    +DY K+L    ++++ V+
Sbjct: 567 GGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVW 621

>pdb|2BF4|A Chain A, A Second Fmn-Binding Site In Yeast Nadph-Cytochrome P450 Reductase Suggests A Novel Mechanism Of Electron Transfer By Diflavin Reductases. Length = 682

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 78/138 (56%), Gaps = 10/138 (7%)
Query: 204 MPRDPNATVIMLATGTGIAPFRGFLWK--MFFEKHEDYKFN---GLAWLFLGVPTSSSLL 258
           +P +P+  VIM+  GTG+APFRGF+ +   F E  +    N   G   LF G   +   L
Sbjct: 519 LPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFL 578
Query: 259 YKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYM 318
           Y++E+ +  +K   +F +  A SR       +K+Y+Q ++ +Y ++++E++  +  ++Y+
Sbjct: 579 YQDEWPEYAKKLDGSFEMVVAHSRLPNT---KKVYVQDKLKDYEDQVFEMI-NNGAFIYV 634
Query: 319 CG-LRGMEKGIDDIMVSL 335
           CG  +GM KG+   +V +
Sbjct: 635 CGDAKGMAKGVSTALVGI 652

>pdb|2BPO|A Chain A, Crystal Structure Of The Yeast Cpr Triple Mutant: D74g, Y75f, K78a. Length = 682

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 78/138 (56%), Gaps = 10/138 (7%)
Query: 204 MPRDPNATVIMLATGTGIAPFRGFLWK--MFFEKHEDYKFN---GLAWLFLGVPTSSSLL 258
           +P +P+  VIM+  GTG+APFRGF+ +   F E  +    N   G   LF G   +   L
Sbjct: 519 LPSNPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFL 578
Query: 259 YKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYM 318
           Y++E+ +  +K   +F +  A SR       +K+Y+Q ++ +Y ++++E++  +  ++Y+
Sbjct: 579 YQDEWPEYAKKLDGSFEMVVAHSRLPNT---KKVYVQDKLKDYEDQVFEMI-NNGAFIYV 634
Query: 319 CG-LRGMEKGIDDIMVSL 335
           CG  +GM KG+   +V +
Sbjct: 635 CGDAKGMAKGVSTALVGI 652

>pdb|4DQL|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 In Complex With Nadp+ Length = 393

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 21/188 (11%)
Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNEN----GEIVKGVCSNFLCDLKPGAEVK-- 193
           R YSI+SS   D    K  S+ V   V + E     GE  KG+ SN+L +L+ G  +   
Sbjct: 172 RYYSISSSPRVD---EKQASITVS--VVSGEAWSGYGEY-KGIASNYLAELQEGDTITCF 225
Query: 194 ITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPT 253
           I+ P   E  +P+DP   +IM+  GTG+APFRGF+      K +     G A L+ G  +
Sbjct: 226 ISTP-QSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSL-GEAHLYFGCRS 283
Query: 254 -SSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKD 312
                LY+EE E  + +        F+    Q      K Y+Q  M +   +L ELL + 
Sbjct: 284 PHEDYLYQEELENAQSEGIITLHTAFSRMPNQP-----KTYVQHVMEQDGKKLIELLDQ- 337
Query: 313 NTYVYMCG 320
             + Y+CG
Sbjct: 338 GAHFYICG 345

>pdb|4DQK|A Chain A, Crystal Structure Of The Fad Binding Domain Of Cytochrome P450 Bm3 Length = 391

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 89/188 (47%), Gaps = 21/188 (11%)
Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNEN----GEIVKGVCSNFLCDLKPGAEVK-- 193
           R YSI+SS   D    K  S+ V   V + E     GE  KG+ SN+L +L+ G  +   
Sbjct: 170 RYYSISSSPRVD---EKQASITVS--VVSGEAWSGYGEY-KGIASNYLAELQEGDTITCF 223
Query: 194 ITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPT 253
           I+ P   E  +P+DP   +IM+  GTG+APFRGF+      K +     G A L+ G  +
Sbjct: 224 ISTP-QSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSL-GEAHLYFGCRS 281
Query: 254 -SSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKD 312
                LY+EE E  + +        F+    Q      K Y+Q  M +   +L ELL + 
Sbjct: 282 PHEDYLYQEELENAQSEGIITLHTAFSRMPNQP-----KTYVQHVMEQDGKKLIELLDQ- 335
Query: 313 NTYVYMCG 320
             + Y+CG
Sbjct: 336 GAHFYICG 343

>pdb|1F20|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase FadNADP+ Domain At 1.9a Resolution Length = 435

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 17/204 (8%)
Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE--IVKGVCSNFLCDLKPGAEVKITGP 197
           R YSI+SS    + D   V L V  + Y   +GE  +  GVCS++L  ++    V     
Sbjct: 211 RYYSISSSP-DMYPDE--VHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVR 267
Query: 198 VGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFE-KHEDYKFNGLAWLFLGVPTSSS 256
                 +PR+P    I++  GTGIAPFR F  +  F+ +H+      +  +F    +   
Sbjct: 268 GAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKID 327
Query: 257 LLYKEEFEKMKEKAPENFR-LDFAVSREQKNEKGEKMYIQTRMAE-YANELWELLKKDNT 314
            +Y+EE  + K K    FR L  A SRE    K    Y+Q  + E  A  ++  LK+   
Sbjct: 328 HIYREETLQAKNKG--VFRELYTAYSREPDRPKK---YVQDVLQEQLAESVYRALKEQGG 382
Query: 315 YVYMCGLRGME----KGIDDIMVS 334
           ++Y+CG   M     K I  IM  
Sbjct: 383 HIYVCGDVTMAADVLKAIQRIMTQ 406

>pdb|1TLL|A Chain A, Crystal Structure Of Rat Neuronal Nitric-Oxide Synthase Reductase Module At 2.3 A Resolution. Length = 688

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 17/231 (7%)
Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE--IVKGVCSNFLCDLKPGAEVKITGP 197
           R YSI+SS    + D   V L V  + Y   +GE  +  GVCS++L  ++    V     
Sbjct: 432 RYYSISSSP-DMYPDE--VHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVR 488
Query: 198 VGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFE-KHEDYKFNGLAWLFLGVPTSSS 256
                 +PR+P    I++  GTGIAPFR F  +  F+ +H+      +  +F    +   
Sbjct: 489 GAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKID 548
Query: 257 LLYKEEFEKMKEKAPENFR-LDFAVSREQKNEKGEKMYIQTRMAE-YANELWELLKKDNT 314
            +Y+EE  + K K    FR L  A SRE       K Y+Q  + E  A  ++  LK+   
Sbjct: 549 HIYREETLQAKNKGV--FRELYTAYSREPDR---PKKYVQDVLQEQLAESVYRALKEQGG 603
Query: 315 YVYMCGLRGME----KGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           ++Y+CG   M     K I  IM         D   +  +L+   +++ +++
Sbjct: 604 HIYVCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654

>pdb|2XNJ|A Chain A, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin) Nadp(H) Reductase (Fpr) From Escherichia Coli Length = 266

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 24/242 (9%)
Query: 87  GRCLLNTKITGDDAPGETW-HMVFSTEGE---VPYKEGQ--SIGVIADGVDKNAKPHKLR 140
           GR +L   +TG     + W   +FS       +P+  GQ   +G+  DG          R
Sbjct: 7   GRRILADWVTGKVTKVQNWTDALFSLTVHAPVLPFTAGQFTKLGLEIDGERVQ------R 60
Query: 141 LYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGK 200
            YS  +S      D+  +   +  +VYTN+ GE+VKG  S  L  LKPG EV++      
Sbjct: 61  AYSYVNSP-----DNPDLEFYLVTVVYTNDAGEVVKGKLSPRLAALKPGDEVQVVSEAAG 115
Query: 201 EMLMPRDPNA-TVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLY 259
             ++   P+  T+ MLATGT I P+   L      K  D +F  L  L      ++ L Y
Sbjct: 116 FFVLDEVPHCETLWMLATGTAIGPYLSILR---LGKDLD-RFKNLV-LVHAARYAADLSY 170
Query: 260 KEEFEKMKEKAPENFRLDFAVSREQ-KNEKGEKMYIQTRMAEYANELWELLKKDNTYVYM 318
               ++++++     R+   VSRE        ++       E  + +   + K+ ++V +
Sbjct: 171 LPLMQELEKRYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVML 230
Query: 319 CG 320
           CG
Sbjct: 231 CG 232

>pdb|2R6H|A Chain A, Crystal Structure Of The Domain Comprising The Nad Binding And The Fad Binding Regions Of The Nadh:ubiquinone Oxidoreductase, Na Translocating, F Subunit From Porphyromonas Gingivalis Length = 290

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 174 IVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233
           I  G+ S+++  LKPG +V  +GP G   +  +D +A  + +  G G AP R  +  +F 
Sbjct: 123 IKPGISSSYIFSLKPGDKVXXSGPYGDFHI--QDTDAEXLYIGGGAGXAPLRAQILHLFR 180
Query: 234 EKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMY 293
                 K +     + G  + + + Y+E+F +++ + P NF+   A+S  Q  +      
Sbjct: 181 TLKTGRKVS----YWYGARSKNEIFYEEDFREIEREFP-NFKFHIALSDPQPEDNWTGYV 235
Query: 294 IQTRMAEYANELWELLKKDNTYVYMCG 320
                  Y N L +    ++   Y CG
Sbjct: 236 GFIHQVIYDNYLKDHDAPEDIEYYXCG 262

>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase Length = 338

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 187 KPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAW 246
           K G ++  TGP G   L  RD    V+MLA GTGIAPF   L ++  +K  ++       
Sbjct: 190 KAGDKMSFTGPFGSFYL--RDVKRPVLMLAGGTGIAPFLSML-QVLEQKGSEHPVR---- 242
Query: 247 LFLGVPTSSSLLYKEEFEKMKEKAP-ENFRLDFAVSREQKNEKGEKMYIQTRMAEYANEL 305
           L  GV     L+  E+ + +++K P   +R   A +  Q   KG   Y+ T   EY    
Sbjct: 243 LVFGVTQDCDLVALEQLDALQQKLPWFEYRTVVAHAESQHERKG---YV-TGHIEY---- 294
Query: 306 WELLKKDNTYVYMCG 320
            + L      VY+CG
Sbjct: 295 -DWLNGGEVDVYLCG 308

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	1e-156
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	1e-141
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	1e-137
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	1e-135
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	1e-120
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	1e-116
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	3e-44
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	5e-44
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	1e-43
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	2e-43
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	2e-04
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	7e-43
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	1e-42
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	8e-41
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	2e-40
1tvc_A	250	Methane monooxygenase component C, methane monooxy	3e-25
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	5e-22
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	5e-22
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	9e-22
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	1e-20
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	3e-18
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	4e-18
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	1e-17
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	5e-17
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	7e-17
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	1e-16
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	2e-14
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	3e-14
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	2e-08
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	1e-05
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	4e-05

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A* Length = 314

 Score =  439 bits (1130), Expect = e-156
 Identities = 267/313 (85%), Positives = 293/313 (93%)

Query: 49  VSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMV 108
           ++   +    APAKVEK SKKMEEG+ VNKFKPKTPY+GRCLLNTKITGDDAPGETWHMV
Sbjct: 2   IASDVEAPPPAPAKVEKHSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMV 61

Query: 109 FSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT 168
           FS EGE+PY+EGQS+GVI DG DKN KPHKLRLYSIASSALGDFGD+K+VSLCVKRL+YT
Sbjct: 62  FSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYT 121

Query: 169 NENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFL 228
           N+ GE +KGVCSNFLCDLKPGAEVK+TGPVGKEMLMP+DPNAT+IML TGTGIAPFR FL
Sbjct: 122 NDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGIAPFRSFL 181

Query: 229 WKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEK 288
           WKMFFEKH+DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP+NFRLDFAVSREQ NEK
Sbjct: 182 WKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEK 241

Query: 289 GEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKK 348
           GEKMYIQTRMA+YA ELWE+LKKDNTYVYMCGL+GMEKGIDDIMVSLAA +GIDW++YK+
Sbjct: 242 GEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKR 301

Query: 349 QLKKSEQWNVEVY 361
           QLKK+EQWNVEVY
Sbjct: 302 QLKKAEQWNVEVY 314

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ... Length = 304

 Score =  400 bits (1030), Expect = e-141
 Identities = 155/302 (51%), Positives = 212/302 (70%), Gaps = 6/302 (1%)

Query: 66  ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIG 124
           ++K     V VN ++P  P+IG+ + N  +  +   G   H+ F   G  + Y EGQSIG
Sbjct: 3   QAKAKHADVPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIG 62

Query: 125 VIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY-TNENGEIVKGVCSNFL 183
           +I  GVDKN KP KLRLYSIAS+  GD  D KT+SLCV++L Y   E+GE V GVCS +L
Sbjct: 63  IIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYL 122

Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH----EDY 239
             ++PG+EVKITGPVGKEML+P DP A VIMLA GTGI P R +LW+MF +       +Y
Sbjct: 123 THIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEY 182

Query: 240 KFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMA 299
           +F G +WL  GVPT+ ++LYKEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+A
Sbjct: 183 QFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVA 242

Query: 300 EYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE 359
           E+A++LW+L+K   T+ Y+CG   ME+GID  + + AA +G+ W DY+K LKK+ +W+VE
Sbjct: 243 EHADQLWQLIKNQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE 302

Query: 360 VY 361
            Y
Sbjct: 303 TY 304

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP} Length = 402

 Score =  396 bits (1019), Expect = e-137
 Identities = 173/363 (47%), Positives = 247/363 (68%), Gaps = 4/363 (1%)

Query: 2   AAVSAAVSLPTSKSTSLPTRTSIISPDRITFRKVPFYYKDVSTGGRVVSVRAQVTTEAPA 61
            + +  +++P ++      R + +    ++ R      + VS G       AQ    A +
Sbjct: 41  KSGTTFITVPYARMNQEMQRITKLGGKIVSIRPAEDAAQIVSEGQSSAQASAQSPM-ASS 99

Query: 62  KVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFS-TEGEVPYKEG 120
                 K  +  V VN ++PKTP++G+C+ N ++  +   G   H+ F  +EG++ Y EG
Sbjct: 100 TKIVHPKTTDTSVPVNIYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEG 159

Query: 121 QSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY-TNENGEIVKGVC 179
           QSIG+I  G DKN KPHKLRLYSIAS+  GD  D+KTVSLCV++L Y   E+GE V GVC
Sbjct: 160 QSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDPESGETVYGVC 219

Query: 180 SNFLCDLKPGAE-VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED 238
           S +LC+L  G + VKITGPVGKEML+P D +ATV+MLATGTGIAPFR FLW+MF E+HED
Sbjct: 220 STYLCNLPVGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRAFLWRMFKEQHED 279

Query: 239 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRM 298
           YKF G AWL  GVP ++++LYK++FEKM  + P+NFRL +A+SREQK   G K+Y+Q+R+
Sbjct: 280 YKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSRV 339

Query: 299 AEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNV 358
           +EYA+EL+E+++K NT+VYMCGL+GM+  ID+   + A   G++W + ++ +KK  +W+V
Sbjct: 340 SEYADELFEMIQKPNTHVYMCGLKGMQPPIDETFTAEAEKRGLNWEEMRRSMKKEHRWHV 399

Query: 359 EVY 361
           EVY
Sbjct: 400 EVY 402

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A* Length = 311

 Score =  387 bits (996), Expect = e-135
 Identities = 154/317 (48%), Positives = 203/317 (64%), Gaps = 14/317 (4%)

Query: 52  RAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFST 111
           R++V+  AP  +E   +       +N +KPK P+    +    + G  APGET H+V   
Sbjct: 2   RSKVSV-APLHLESAKE-----PPLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDH 55

Query: 112 EGEVPYKEGQSIGVIADGVD--KNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY-- 167
            G VPY EGQS GVI  G +  K   P  +RLYSIAS+  GD  D +T SLCV+R VY  
Sbjct: 56  GGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYD 115

Query: 168 --TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMP-RDPNATVIMLATGTGIAPF 224
             T +      GVCSNFLC+ KPG ++++TGP GK ML+P  DPNAT IM+ATGTG+APF
Sbjct: 116 PETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPF 175

Query: 225 RGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ 284
           RG+L +MF E   +Y+F GLAWLFLGV  S SLLY EEF    ++ P+NFR D A+SREQ
Sbjct: 176 RGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQ 235

Query: 285 KNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWL 344
           KN  G KMY+Q ++ EY++E+++LL     ++Y CGL+GM  GI D +  +A   G  W 
Sbjct: 236 KNRSGGKMYVQDKIEEYSDEIFKLL-DGGAHIYFCGLKGMMPGIQDTLKKVAERRGESWD 294

Query: 345 DYKKQLKKSEQWNVEVY 361
               QLKK++QW+VEVY
Sbjct: 295 QKLAQLKKNKQWHVEVY 311

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A* Length = 314

 Score =  348 bits (895), Expect = e-120
 Identities = 109/318 (34%), Positives = 162/318 (50%), Gaps = 26/318 (8%)

Query: 65  KESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGE---------TWHMVFSTEGE- 114
               K      +N FK   PY  + + N  +T +   G+            +V + +   
Sbjct: 2   HSLMKPTREPQINLFKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSA 61

Query: 115 VPYKEGQSIGVIADGVDKNAK-------PHKLRLYSIASSALGDFGDSKTVSLCVKRLVY 167
            PY  GQS GVI  G D   K        + +RLYSIAS +         +   +KR   
Sbjct: 62  YPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNI 121

Query: 168 TNENGEI-VKGVCSNFLCDLKPGAEVKITGPVGKEMLMP-RDPNATVIMLATGTGIAPFR 225
            +ENG I  KGVCSN++CDLKPG EV +TGP GK+ L+P  D +  ++ LATGTGIAPF 
Sbjct: 122 YDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFI 181

Query: 226 GFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQK 285
           G   ++   +H+  KF G   L  G P S  L+  +  + ++    +NF+L  A+SRE+K
Sbjct: 182 GMSEELL--EHKLIKFTGNITLVYGAPYSDELVMMDYLKGLE-SKHKNFKLITAISREEK 238

Query: 286 NE-KGEKMYIQTRMAEYANELWELLKKDNTYVYMCG-LRGMEKGIDDIMVSLAANDGIDW 343
           N   G +MYI  R+ E A  + ++L       Y+CG  +GMEKG+ + +  ++ N G  +
Sbjct: 239 NSFDGGRMYISHRVREQAEAVKKIL-NGGGRFYICGGPKGMEKGVIEEIQKISGNTG-TY 296

Query: 344 LDYKKQLKKSEQWNVEVY 361
            ++K  L+ + Q  VE Y
Sbjct: 297 EEFKHHLEGAHQLFVETY 314

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A* Length = 316

 Score =  338 bits (868), Expect = e-116
 Identities = 78/330 (23%), Positives = 135/330 (40%), Gaps = 54/330 (16%)

Query: 71  EEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGV 130
           EE   +N +  K P   + +    +   ++P E +H+  +  G   Y EG + G+I    
Sbjct: 2   EENNFINLYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGLFKYLEGHTCGIIPYYN 61

Query: 131 DKNAKPHK------------------------------LRLYSIASSALGDFGDSKTVSL 160
           + +  P+                                RLYSI+SS   +   + +V++
Sbjct: 62  ELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSSNNME---NLSVAI 118

Query: 161 CVKRLVYT-NENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDP---NATVIMLA 216
            + +   T N       G CS F+ +LK   ++ +TG  G    +P D    N   I +A
Sbjct: 119 KIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGY-FNLPNDAIQKNTNFIFIA 177

Query: 217 TGTGIAPFRGFLWKMFFEK-----HEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP 271
           TGTGI+P+  FL K+F        + +  + G   ++ GV    S+LY  E E  ++  P
Sbjct: 178 TGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKMYP 237

Query: 272 ENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDI 331
            N  + +  S +Q N      Y+Q  + +   E   L       +Y+CG + +   + DI
Sbjct: 238 NNINIHYVFSYKQ-NSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVMDI 296

Query: 332 MVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           + S            +   KK ++ +VEVY
Sbjct: 297 LKS----------HDQFDEKKKKRVHVEVY 316

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A* Length = 458

 Score =  157 bits (399), Expect = 3e-44
 Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 21/233 (9%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVG 199
           R YSIASS+        +V +C   + Y  + G I KGV +N+L   +P  E      V 
Sbjct: 235 RYYSIASSSKVH---PNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVP 291

Query: 200 -----KEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS 254
                 +  +P      VIM+  GTG+APF GF+ +  + + +  +  G   L+ G   S
Sbjct: 292 MFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEV-GETLLYYGCRRS 350

Query: 255 SS-LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDN 313
               LY+EE  +         +L+ A SREQ      K+Y+Q  + +    LW+L+ +  
Sbjct: 351 DEDYLYREELAQFHRDG-ALTQLNVAFSREQ----SHKVYVQHLLKQDREHLWKLI-EGG 404

Query: 314 TYVYMCG-LRGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361
            ++Y+CG  R M + + +    + A  G       +DY K+L    +++++V+
Sbjct: 405 AHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW 457

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A* Length = 618

 Score =  159 bits (404), Expect = 5e-44
 Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 27/236 (11%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPV- 198
           R YSIASS+        +V +C   + Y  + G I KGV +N+L   +P  E      V 
Sbjct: 395 RYYSIASSSKVH---PNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVP 451

Query: 199 ----GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS 254
                 +  +P      VIM+  GTG+APF GF+ +  + + +  +  G   L+ G   S
Sbjct: 452 MFVRKSQFRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEV-GETLLYYGCRRS 510

Query: 255 SS-LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDN 313
               LY+EE  +   +     +L+ A SREQ      K+Y+Q  + +    LW+L+ +  
Sbjct: 511 DEDYLYREELAQF-HRDGALTQLNVAFSREQ----SHKVYVQHLLKQDREHLWKLI-EGG 564

Query: 314 TYVYMCGL-RGMEKGIDDIMVSLAANDG-------IDWLDYKKQLKKSEQWNVEVY 361
            ++Y+CG  R M + + +    + A  G       +D++   K+L    +++++V+
Sbjct: 565 AHIYVCGDARNMARDVQNTFYDIVAELGAMEHAQAVDYI---KKLMTKGRYSLDVW 617

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4 Length = 435

 Score =  155 bits (393), Expect = 1e-43
 Identities = 59/231 (25%), Positives = 97/231 (41%), Gaps = 17/231 (7%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNEN--GEIVKGVCSNFLCDLKPGAEVKITGP 197
           R YSI+SS          V L V  + Y   +  G +  GVCS++L  ++    V     
Sbjct: 211 RYYSISSSPDMY---PDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVR 267

Query: 198 VGKEMLMPRDPNATVIMLATGTGIAPFRGFLW-KMFFEKHEDYKFNGLAWLFLGVPTSSS 256
                 +PR+P    I++  GTGIAPFR F   + F  +H+         L  G   S  
Sbjct: 268 GAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNP-CPMVLVFGCRQSKI 326

Query: 257 -LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAE-YANELWELLKKDNT 314
             +Y+EE  + K K      L  A SRE       K Y+Q  + E  A  ++  LK+   
Sbjct: 327 DHIYREETLQAKNKG-VFRELYTAYSREPDR---PKKYVQDVLQEQLAESVYRALKEQGG 382

Query: 315 YVYMCGLRGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361
           ++Y+CG   M   +   +  +    G     D   +  +L+   +++ +++
Sbjct: 383 HIYVCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 433

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A* Length = 393

 Score =  153 bits (389), Expect = 2e-43
 Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 22/232 (9%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE-IVKGVCSNFLCDLKPGAEVKITGPV 198
           R YSI+SS   D    K  S+ V  +     +G    KG+ SN+L +L+ G  +     +
Sbjct: 172 RYYSISSSPRVD---EKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITC--FI 226

Query: 199 ---GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSS 255
                E  +P+DP   +IM+  GTG+APFRGF+      K +     G A L+ G  +  
Sbjct: 227 STPQSEFTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSL-GEAHLYFGCRSPH 285

Query: 256 S-LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNT 314
              LY+EE E  + +      L  A SR        K Y+Q  M +   +L ELL     
Sbjct: 286 EDYLYQEELENAQSE--GIITLHTAFSRMPNQ---PKTYVQHVMEQDGKKLIELL-DQGA 339

Query: 315 YVYMCG-LRGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361
           + Y+CG    M   ++  ++   A+       D   + +QL++  ++  +V+
Sbjct: 340 HFYICGDGSQMAPAVEATLMKSYADVHQVSEADARLWLQQLEEKGRYAKDVW 391

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A* Length = 393

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 9/46 (19%), Positives = 18/46 (39%)

Query: 82  KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIA 127
              +    + + ++    +   T H+      E  Y+EG  +GVI 
Sbjct: 4   HGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIP 49

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4 Length = 688

 Score =  156 bits (397), Expect = 7e-43
 Identities = 58/230 (25%), Positives = 95/230 (41%), Gaps = 15/230 (6%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYT--NENGEIVKGVCSNFLCDLKPGAEVKITGP 197
           R YSI+SS          V L V  + Y   +  G +  GVCS++L  ++    V     
Sbjct: 432 RYYSISSSPDMY---PDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVR 488

Query: 198 VGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSS- 256
                 +PR+P    I++  GTGIAPFR F  +  F+            L  G   S   
Sbjct: 489 GAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKID 548

Query: 257 LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAE-YANELWELLKKDNTY 315
            +Y+EE  + K K      L  A SRE       K Y+Q  + E  A  ++  LK+   +
Sbjct: 549 HIYREETLQAKNKG-VFRELYTAYSREPDR---PKKYVQDVLQEQLAESVYRALKEQGGH 604

Query: 316 VYMCGLRGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361
           +Y+CG   M   +   +  +    G     D   +  +L+   +++ +++
Sbjct: 605 IYVCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 654

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A* Length = 374

 Score =  151 bits (383), Expect = 1e-42
 Identities = 68/231 (29%), Positives = 113/231 (48%), Gaps = 26/231 (11%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPV 198
           RLYSIASS          V + V  +V  +  G    G  S+FL D ++   EV++   +
Sbjct: 161 RLYSIASSQAEV---ENEVHVTV-GVVRYDVEGRARAGGASSFLADRVEEEGEVRV--FI 214

Query: 199 --GKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSS 256
                  +P +P   VIM+  GTGIAPFR F+ +   ++       G  WLF G P  + 
Sbjct: 215 EHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAP-----GKNWLFFGNPHFTE 269

Query: 257 -LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTY 315
             LY+ E+++  ++     R+D A SR+QK    EK+Y+Q ++ E   ELW  +  D  +
Sbjct: 270 DFLYQVEWQRYVKEG-VLTRIDLAWSRDQK----EKVYVQDKLREQGAELWRWI-NDGAH 323

Query: 316 VYMCGL-RGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY 361
           +Y+CG    M K ++  ++ + A  G        ++  +L+   ++  +VY
Sbjct: 324 IYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 374

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A* Length = 682

 Score =  151 bits (382), Expect = 8e-41
 Identities = 59/260 (22%), Positives = 115/260 (44%), Gaps = 45/260 (17%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVY---TNENGEIVKGVCSNFLCDLKPGAEVKITG 196
           R YSI+SS+L +    +TV +      +      +   V GV +N L +++         
Sbjct: 430 RYYSISSSSLSE---KQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIA 486

Query: 197 PVGKEML-------------------------MPRDPNATVIMLATGTGIAPFRGFL--- 228
                +                          +P +P+  VIM+  GTG+APFRGF+   
Sbjct: 487 ETNLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIRER 546

Query: 229 --WKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKN 286
             +    +K  +    G   LF G   +   LY++E+ +  +K   +F +  A SR    
Sbjct: 547 VAFLESQKKGGNNVSLGKHILFYGSRNTDDFLYQDEWPEYAKKLDGSFEMVVAHSRL--- 603

Query: 287 EKGEKMYIQTRMAEYANELWELLKKDNTYVYMCG-LRGMEKGIDDIMVSLAANDG----I 341
              +K+Y+Q ++ +Y ++++E++  +  ++Y+CG  +GM KG+   +V + +        
Sbjct: 604 PNTKKVYVQDKLKDYEDQVFEMI-NNGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTD 662

Query: 342 DWLDYKKQLKKSEQWNVEVY 361
           +  +  K LK S ++  +V+
Sbjct: 663 EATELIKMLKTSGRYQEDVW 682

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A* Length = 539

 Score =  148 bits (376), Expect = 2e-40
 Identities = 56/252 (22%), Positives = 106/252 (42%), Gaps = 35/252 (13%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNEN--GEIVKGVCSNFLCDLKPGAEVKITGP 197
           R YS ASS+L        +      + + +      + KGVC+ +L  L           
Sbjct: 292 RPYSCASSSLFH---PGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHA 348

Query: 198 VGKEML------------------MPRDPNATVIMLATGTGIAPFRGFL--WKMFFEKHE 237
             ++                    +P DP+  +IM+  GTGIAPF GFL   +   E+H 
Sbjct: 349 SHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHP 408

Query: 238 DYKFNGLAWLFLGVPTSSS-LLYKEEFEKMKEKAPENFRLDFAVSREQ--KNEKGEKMYI 294
           D  F G  WLF G        L+++E     +       L  + SR+     E+    Y+
Sbjct: 409 DGNF-GAMWLFFGCRHKDRDYLFRKELRHFLKHG-ILTHLKVSFSRDAPVGEEEAPAKYV 466

Query: 295 QTRMAEYANELWELLKKDNTYVYMCG-LRGMEKGIDDIMVSLAANDG----IDWLDYKKQ 349
           Q  +  +  ++  +L ++N ++Y+CG  + M K + D +V + + +     ++ +     
Sbjct: 467 QDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTLAT 526

Query: 350 LKKSEQWNVEVY 361
           LK+ +++  +++
Sbjct: 527 LKEEKRYLQDIW 538

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250

 Score =  101 bits (254), Expect = 3e-25
 Identities = 38/207 (18%), Positives = 77/207 (37%), Gaps = 32/207 (15%)

Query: 115 VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEI 174
           V ++ GQ + +   G D +      R YS A+           +   ++          +
Sbjct: 42  VKFEPGQFMDLTIPGTDVS------RSYSPANLP----NPEGRLEFLIRV---------L 82

Query: 175 VKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233
            +G  S++L +  + G  + + GP+G    +     A    +A GTG+AP    +     
Sbjct: 83  PEGRFSDYLRNDARVGQVLSVKGPLG-VFGLKERGMAPRYFVAGGTGLAPVVSMV----- 136

Query: 234 EKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMY 293
            + +++       ++ GV T   L Y +E + ++     N  +   V     + +GE+  
Sbjct: 137 RQMQEWTAPNETRIYFGVNTEPELFYIDELKSLERSMR-NLTVKACVWHPSGDWEGEQGS 195

Query: 294 IQTRMAEYANELWELLKKDNTYVYMCG 320
               + E            N  +Y+CG
Sbjct: 196 PIDALREDLESSDA-----NPDIYLCG 217

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* Length = 248

 Score = 92.7 bits (231), Expect = 5e-22
 Identities = 49/230 (21%), Positives = 81/230 (35%), Gaps = 34/230 (14%)

Query: 116 PYKEGQ--SIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE 173
           P+  GQ   +G+  DG          R YS  +S      D+  +   +           
Sbjct: 30  PFTAGQFTKLGLEIDGERV------QRAYSYVNSP-----DNPDLEFYLVT--------- 69

Query: 174 IVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNA-TVIMLATGTGIAPFRGFLWKMF 232
           +  G  S  L  LKPG EV++        ++   P+  T+ MLATGT I P+   L    
Sbjct: 70  VPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDEVPHCETLWMLATGTAIGPYLSIL---- 125

Query: 233 FEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKM 292
               +D        L      ++ L Y    ++++++     R+   VSRE         
Sbjct: 126 -RLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRET-AAGSLTG 183

Query: 293 YIQTRMAEYANELW--ELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG 340
            I   +     E      + K+ ++V +CG   M   + D    L     
Sbjct: 184 RIPALIESGELESTIGLPMNKETSHVMLCGNPQM---VRDTQQLLKETRQ 230

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232

 Score = 92.2 bits (230), Expect = 5e-22
 Identities = 37/240 (15%), Positives = 76/240 (31%), Gaps = 37/240 (15%)

Query: 104 TWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK 163
            + +    +    ++ GQ + V+ D  DK       R +S+AS+      +   + L + 
Sbjct: 17  VYRVRIVPDAAFSFRAGQYLMVVMDERDK-------RPFSMASTP----DEKGFIELHIG 65

Query: 164 RLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIA 222
                         + +  + D +    ++ +  P G E  +  D    +I++A GTG +
Sbjct: 66  A---------SEINLYAKAVMDRILKDHQIVVDIPHG-EAWLRDDEERPMILIAGGTGFS 115

Query: 223 PFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR 282
             R  L             N    ++ G      L    E E +  K P   ++   V +
Sbjct: 116 YARSIL-----LTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHP-GLQVVPVVEQ 169

Query: 283 EQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGID 342
            +   +G    + T + +    L          +Y+ G   M            +     
Sbjct: 170 PEAGWRGRTGTVLTAVLQDHGTL------AEHDIYIAGRFEM---AKIARDLFCSERNAR 220

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270

 Score = 92.5 bits (230), Expect = 9e-22
 Identities = 44/263 (16%), Positives = 91/263 (34%), Gaps = 39/263 (14%)

Query: 81  PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVP---YKEGQSIGVIADGVDKNAKPH 137
           P+     R +   +++ D          FS            G+ I V A    K     
Sbjct: 9   PRGRIHCRLVAKKELSRD-----VRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLC--- 60

Query: 138 KLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGP 197
            +R Y+  S       +     L VK             G+ + +L  L  G+ + + GP
Sbjct: 61  -MRAYTPTSMV----DEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGP 115

Query: 198 VGK-------EMLMPRDPNA--TVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLF 248
           +G          ++         + M+  G+GI P    +  +  ++ ED+       L 
Sbjct: 116 LGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTE---MHLV 172

Query: 249 LGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNE---KGEKMYIQTRMAEYANEL 305
               T   +L ++E ++   + P+  ++ + + + ++ E   K    ++   +      L
Sbjct: 173 YANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAV------L 226

Query: 306 WELLKK--DNTYVYMCGLRGMEK 326
            E + +  D+T    CG   M +
Sbjct: 227 REHVPEGGDDTLALACGPPPMIQ 249

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score = 90.1 bits (224), Expect = 1e-20
 Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 36/210 (17%)

Query: 112 EGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNEN 171
           + ++ +  GQ + V   G  +       R YS +S        ++     V+        
Sbjct: 134 QPDIHFLAGQYVNVTLPGTTET------RSYSFSSQP-----GNRLTGFVVRN------- 175

Query: 172 GEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWK 230
             + +G  S +L    K G ++  TGP G   L  RD    V+MLA GTGIAPF   L  
Sbjct: 176 --VPQGKMSEYLSVQAKAGDKMSFTGPFGSFYL--RDVKRPVLMLAGGTGIAPFLSML-- 229

Query: 231 MFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGE 290
              +  E         L  GV     L+  E+ + +++K P  F     V+  + ++   
Sbjct: 230 ---QVLEQKGSEHPVRLVFGVTQDCDLVALEQLDALQQKLP-WFEYRTVVAHAE-SQHER 284

Query: 291 KMYIQTRMAEYANELWELLKKDNTYVYMCG 320
           K Y+   +        + L      VY+CG
Sbjct: 285 KGYVTGHIEY------DWLNGGEVDVYLCG 308

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis} Length = 290

 Score = 83.0 bits (205), Expect = 3e-18
 Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 21/199 (10%)

Query: 130 VDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL------VYTNENGEIVKGVCSNFL 183
           +    +   +R YS+A+       +   ++L V+                I  G+ S+++
Sbjct: 77  LTCKNEEETVRAYSMANYP----AEGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYI 132

Query: 184 CDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNG 243
             LKPG +V ++GP G   +   D +A ++ +  G G+AP R              K   
Sbjct: 133 FSLKPGDKVMMSGPYGDFHIQ--DTDAEMLYIGGGAGMAPLRA----QILHLFRTLKTGR 186

Query: 244 LAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQK--NEKGEKMYIQTRMAEY 301
               + G  + + + Y+E+F +++ + P NF+   A+S  Q   N  G   +I   + + 
Sbjct: 187 KVSYWYGARSKNEIFYEEDFREIEREFP-NFKFHIALSDPQPEDNWTGYVGFIHQVIYD- 244

Query: 302 ANELWELLKKDNTYVYMCG 320
            N L +    ++   YMCG
Sbjct: 245 -NYLKDHDAPEDIEYYMCG 262

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257

 Score = 82.1 bits (203), Expect = 4e-18
 Identities = 46/235 (19%), Positives = 85/235 (36%), Gaps = 44/235 (18%)

Query: 116 PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIV 175
            +K GQ + +   G++ + +P   R YSIAS         + +     +         + 
Sbjct: 30  RFKTGQFVMI---GLEVDGRPLM-RAYSIASPN-----YEEHLEFFSIK---------VP 71

Query: 176 KGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNA-TVIMLATGTGIAPFRGFLWKMFFE 234
            G  ++ L  LK G E+ ++      ++         + +L+TGTG+APF   +      
Sbjct: 72  DGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDP--- 128

Query: 235 KHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKM-------KEKAPENFRLDFAVSREQKNE 287
             E Y+      L  GV   S L Y +   K+        ++  E       V+RE    
Sbjct: 129 --ETYERYEKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREPFRN 186

Query: 288 KGEKMYIQTRMAEYANELWELLK-----KDNTYVYMCGLRGMEKGIDDIMVSLAA 337
           +G        M     +L+E +        +    +CG   M   +++    L +
Sbjct: 187 QG---RQTDLMRS--GKLFEDIGLPPMNPQDDRAMICGSPSM---LEETSAVLDS 233

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* Length = 275

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 41/204 (20%), Positives = 73/204 (35%), Gaps = 31/204 (15%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVG 199
           R Y+  SS      D   V L +K             G  S +L  ++ G  ++  GP G
Sbjct: 66  RPYTPISSDD----DKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSG 121

Query: 200 ---------------KEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL 244
                          K+         +V M+A GTGI P    + +   +  +D   + +
Sbjct: 122 LLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVI-RAIMKDPDD---HTV 177

Query: 245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANE 304
             L     T   +L + E E+++ K    F+L + + R  +     + ++   M      
Sbjct: 178 CHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEM------ 231

Query: 305 LWELLKK--DNTYVYMCGLRGMEK 326
           + + L    +   V MCG   M +
Sbjct: 232 IRDHLPPPEEEPLVLMCGPPPMIQ 255

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272

 Score = 79.1 bits (195), Expect = 5e-17
 Identities = 48/272 (17%), Positives = 89/272 (32%), Gaps = 52/272 (19%)

Query: 81  PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQ--SIGVIADGVDKNAKPHK 138
              P           T        +    +    + ++ G+   IG++ D    N KP  
Sbjct: 13  KVLPDAQTVTSVRHWTDT-----LFSFRVTRPQTLRFRSGEFVMIGLLDD----NGKPIM 63

Query: 139 LRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPV 198
            R YSIAS A       + +     +         +  G  ++ L  +K G ++ +    
Sbjct: 64  -RAYSIASPA-----WDEELEFYSIK---------VPDGPLTSRLQHIKVGEQIILRPKP 108

Query: 199 GKEMLMPRDPNA-TVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSL 257
              +++        +  LATGTGIAPF   + +      E Y+      +     T + L
Sbjct: 109 VGTLVIDALLPGKRLWFLATGTGIAPFASLMREP-----EAYEKFDEVIMMHACRTVAEL 163

Query: 258 LYKEEFEKM-------KEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLK 310
            Y  +  +         E      +     +RE+ +  G    I   +A    +++E L 
Sbjct: 164 EYGRQLVEALQEDPLIGELVEGKLKYYPTTTREEFHHMG---RITDNLAS--GKVFEDLG 218

Query: 311 -----KDNTYVYMCGLRGMEKGIDDIMVSLAA 337
                 +     +CG         D+M  L +
Sbjct: 219 IAPMNPETDRAMVCGSLAF---NVDVMKVLES 247

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271

 Score = 78.7 bits (194), Expect = 7e-17
 Identities = 47/245 (19%), Positives = 80/245 (32%), Gaps = 48/245 (19%)

Query: 109 FSTEGEVPYKEGQ--SIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLV 166
            + +  + +  G+   +G+  DG     KP   R YSI S         + +     +  
Sbjct: 39  CTRDQALRFNNGEFTMVGLEVDG-----KPL-TRAYSIVSPN-----YEEHLEFFSIK-- 85

Query: 167 YTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNA-TVIMLATGTGIAPFR 225
                  +  G  ++ L  LK G  V I       ++        T+ ML+TGTG+APF 
Sbjct: 86  -------VQNGPLTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFM 138

Query: 226 GFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKM-------KEKAPENFRLDF 278
             +        + Y+      L         L Y +  +          +   E      
Sbjct: 139 SIIR-----DPDIYERFDKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKLVYYP 193

Query: 279 AVSREQKNEKGEKMYIQTRMAEYANELWELLK-----KDNTYVYMCGLRGMEKGIDDIMV 333
            V+RE+   +G    I   +A    +L+  L       +   V +CG   M   + D   
Sbjct: 194 TVTREEFENEG---RITDLIAS--GKLFTDLDMPPFSPEQDRVMLCGSTAM---LKDTTE 245

Query: 334 SLAAN 338
            L   
Sbjct: 246 LLKKA 250

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} Length = 243

 Score = 77.6 bits (192), Expect = 1e-16
 Identities = 39/198 (19%), Positives = 69/198 (34%), Gaps = 27/198 (13%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVG 199
           R Y+  SS      +     L +K   Y         G  S ++  L PG  +++ GP G
Sbjct: 61  RPYTPVSSD----DEKGYFDLIIKV--YEK-------GQMSQYIDHLNPGDFLQVRGPKG 107

Query: 200 KEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLY 259
           +      +    + M+A GTGI P       +     E         L         +L 
Sbjct: 108 Q-FDYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTII----NLIFANVNEDDILL 162

Query: 260 KEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKD--NTYVY 317
           + E + M +K   NF++ + ++       G   ++   M      + +       +  V 
Sbjct: 163 RTELDDMAKKYS-NFKVYYVLNNPPAGWTGGVGFVSADM------IKQHFSPPSSDIKVM 215

Query: 318 MCGLRGMEKGIDDIMVSL 335
           MCG   M K +   + +L
Sbjct: 216 MCGPPMMNKAMQGHLETL 233

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 44/223 (19%), Positives = 78/223 (34%), Gaps = 29/223 (13%)

Query: 116 PYKEGQSIGVIADGVDKNAKPHK-LRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEI 174
            Y+ GQ +GV    +     PH+ +R YS+         D K   + VKR     E G  
Sbjct: 182 EYRPGQYLGV---WLKPEGFPHQEIRQYSLTRKP-----DGKGYRIAVKR-----EEG-- 226

Query: 175 VKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233
             G  SN+L +    G  VK+  P G +  M    +  V +++ G G  P    L     
Sbjct: 227 --GQVSNWLHNHANVGDVVKLVAPAG-DFFMAVADDTPVTLISAGVGQTPMLAML-DTLA 282

Query: 234 EKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMY 293
           +     +       F          + +E +++ +  P  F       +  + ++ +  +
Sbjct: 283 KAGHTAQ----VNWFHAAENGDVHAFADEVKELGQSLP-RFTAHTWYRQPSEADRAKGQF 337

Query: 294 IQT-RMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSL 335
                M    ++L           Y+CG  G  +     +V L
Sbjct: 338 DSEGLMD--LSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDL 378

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403

 Score = 72.1 bits (177), Expect = 3e-14
 Identities = 38/223 (17%), Positives = 76/223 (34%), Gaps = 25/223 (11%)

Query: 116 PYKEGQSIGVIADGVDKNAKPHK-LRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEI 174
            ++ GQ   V    +D  A   + +R YS++        + +T  + VKR       G  
Sbjct: 184 NFEPGQYTSV---AIDVPALGLQQIRQYSLSDMP-----NGRTYRISVKRE----GGGPQ 231

Query: 175 VKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233
             G  SN L D +  G +VK+  P G    +  D    +++++ G G+ P    L     
Sbjct: 232 PPGYVSNLLHDHVNVGDQVKLAAPYG-SFHIDVDAKTPIVLISGGVGLTPMVSMLKVALQ 290

Query: 234 EKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMY 293
                           G   S+    ++   +  +    N  L     +    +   + Y
Sbjct: 291 APPRQ------VVFVHGARNSAVHAMRDRLREAAKTYE-NLDLFVFYDQPLPEDVQGRDY 343

Query: 294 IQT-RMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSL 335
                +     ++ + +   +   Y+CG     +   D + +L
Sbjct: 344 DYPGLVD--VKQIEKSILLPDADYYICGPIPFMRMQHDALKNL 384

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B* Length = 262

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 31/168 (18%)

Query: 176 KGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNA-TVIMLATGTGIAPFRGFLWKMFFE 234
           +   +  L  L+ GA+V + GP+G    +    +   ++++  G G+ P    L K   +
Sbjct: 76  ETTGTYKLSKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLY-ELAKQLEK 134

Query: 235 KHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYI 294
                       + LG  + +  + + EF  +K     N  L  A        KG     
Sbjct: 135 TGCQ------MTILLGFASENVKILENEFSNLK-----NVTLKIATDDGSYGTKG----- 178

Query: 295 QTRMAEYANELWELLKKDNTYVYMCGLRGMEKGI-------DDIMVSL 335
                 +   L   +  +   +Y CG   M K +       + + +S+
Sbjct: 179 ------HVGMLMNEIDFEVDALYTCGAPAMLKAVAKKYDQLERLYISM 220

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor} Length = 243

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 35/214 (16%), Positives = 77/214 (35%), Gaps = 47/214 (21%)

Query: 116 PYKEGQSIGVIADGVDKNAKPHK-LRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEI 174
            Y+ GQ IG+    V      ++ +R YS++ ++     + +   + VKR    ++N   
Sbjct: 33  DYQPGQYIGI---EVTPEGSDYREIRQYSLSHAS-----NGREYRISVKREGVGSDNP-- 82

Query: 175 VKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFF 233
             G+ S++L + +K G  VK+  P G       +    V++++ G G  P +  L     
Sbjct: 83  --GLVSHYLHNNVKVGDSVKLYAPAGD--FFYVERERPVVLISAGVGATPMQAIL----- 133

Query: 234 EKHEDYKFNGLA-------WLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKN 286
                   + LA              ++    + +E  ++  +     ++ +        
Sbjct: 134 --------HTLAKQNKSGVTYLYACNSAKEHTFAQETAQLIAQQGWMQQVWYRDESADDV 185

Query: 287 EKGEKMYIQTRMAEYANELWELLKKDNTYVYMCG 320
            +G                  +L  ++   Y+CG
Sbjct: 186 LQG-----------EMQLAELILPIEDGDFYLCG 208

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 47/268 (17%), Positives = 82/268 (30%), Gaps = 95/268 (35%)

Query: 106 HMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL 165
           HM F T GE  Y+    + V  D                      +F D K V       
Sbjct: 6   HMDFET-GEHQYQYKDILSVFEDAFVD------------------NF-DCKDVQ------ 39

Query: 166 VYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATV-----IMLATGTG 220
                  ++ K + S          E+         ++M +D  +        +L+    
Sbjct: 40  -------DMPKSILSK--------EEID-------HIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 221 IAPFRGFLWKMFFEK--HEDYKFNGLAWLFLGV------PTSSSLLYKEEFEKMKEKAPE 272
           +        + F E+    +YK     +L   +      P+  + +Y E+ +++     +
Sbjct: 78  MV-------QKFVEEVLRINYK-----FLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQ 124

Query: 273 NFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEK------ 326
            F   + VSR Q        Y++ R A     L EL  +    V + G+ G  K      
Sbjct: 125 VFA-KYNVSRLQP-------YLKLRQA-----LLEL--RPAKNVLIDGVLGSGKTWVALD 169

Query: 327 GIDDIMVSLAANDGIDWLDYKKQLKKSE 354
                 V    +  I WL+ K       
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPET 197

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus} Length = 158

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 29/169 (17%)

Query: 186 LKPGAEVK-ITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGL 244
           +K G  +  + GP+G  +  P +    ++ +   TGI               + ++  G 
Sbjct: 1   MKEGDSLLNVAGPLGTPV--PMEKFGKILAIGAYTGIVEVYPIA--------KAWQEIGN 50

Query: 245 AWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANE 304
               L V     ++ KEE EK   +      ++       ++       +  R+ E   E
Sbjct: 51  DVTTLHVTFEPMVILKEELEKAVTR----HIVEPVPLNPNQDFLANMKNVSQRLKEKVRE 106

Query: 305 LWELLKKDNTYVYMCGLRGM---------EKGIDDIMVSLAAN--DGID 342
           L E    D   V+M G  G          E G+  + V L     DG++
Sbjct: 107 LLESEDWD--LVFMVGPVGDQKQVFEVVKEYGV-PMKVDLHPIMVDGLE 152

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 321

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 46/201 (22%)

Query: 140 RLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPV 198
           R YS+ + +     +     + VKR    + NG       S    D    G  V+++ P 
Sbjct: 55  RTYSLCNDS----QERNRYVIAVKR----DSNG----RGGSISFIDDTSEGDAVEVSLPR 102

Query: 199 GKEMLMPRDPNAT-VIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSL 257
                 P D  A   I++A G GI P      ++  E    +       L+         
Sbjct: 103 N---EFPLDKRAKSFILVAGGIGITPMLSMARQLRAEGLRSF------RLYYLTRDPEGT 153

Query: 258 LYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKK--DNTY 315
            + +E    +     + ++                           + W + +K     +
Sbjct: 154 AFFDELTSDEW--RSDVKIHHDHGDP-----------TKAF-----DFWSVFEKSKPAQH 195

Query: 316 VYMCGLRGMEKGIDDIMVSLA 336
           VY CG + +   +D +     
Sbjct: 196 VYCCGPQAL---MDTVRDMTG 213

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	100.0
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	100.0
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	100.0
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	100.0
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	100.0
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	100.0
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	100.0
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	100.0
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	100.0
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	100.0
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	100.0
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	100.0
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	100.0
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	100.0
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	100.0
1tvc_A	250	Methane monooxygenase component C, methane monooxy	100.0
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	100.0
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	100.0
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	100.0
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	100.0
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	100.0
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	100.0
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	100.0
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	100.0
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	100.0
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	100.0
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	100.0
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	100.0
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	100.0
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	100.0
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	100.0
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	100.0
2gpj_A	252	Siderophore-interacting protein; structural genomi	99.96
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	99.9
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	99.87
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	99.84
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	92.03
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	91.83
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	91.17
3qfs_A	458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	89.73
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	83.76
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	81.5
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	80.86

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=100.00  E-value=6.7e-55  Score=408.66  Aligned_cols=298  Identities=86%  Similarity=1.420  Sum_probs=264.3

Q ss_pred             hhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecc
Q 043022           64 EKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYS  143 (361)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~yS  143 (361)
                      ....+..+.+++.+.|.|..++.++|+++++++++..++++++|+|..+..++|.||||+.|.+++.+.+|.+++.|+||
T Consensus        13 ~~~~~~~~~~~~~~~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~yS   92 (310)
T 3vo2_A           13 AKTSKKQDEGLVTNKYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEGEIPYREGQSIGIIADGEDKNGKPHKLRLYS   92 (310)
T ss_dssp             --CCSBSCTTCCCCSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSCBCCCEEEE
T ss_pred             hhhhcccccCCceeeecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCCCCcccCCCEEEEECCCcCCCCCcCcceeee
Confidence            34455666788889999999999999999999998888889999999988889999999999998876667677899999


Q ss_pred             cccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhh
Q 043022          144 IASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAP  223 (361)
Q Consensus       144 ias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP  223 (361)
                      |+|+|..+..+++.++|+|++++|.+..++.++|.+|+||+++++|+.|.|.||+|.+|.++.+..+++|||||||||||
T Consensus        93 ias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP  172 (310)
T 3vo2_A           93 IASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPGADVKITGPVGKEMLMPKDPNATVIMLATGTGIAP  172 (310)
T ss_dssp             CCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGGHH
T ss_pred             cCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcchhhHHhcCCCCCEEEEEeccCCcccCCCCCCCCEEEEeCCcchhH
Confidence            99998632224689999999998887777778899999999999999999999999988877666789999999999999


Q ss_pred             HHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHH
Q 043022          224 FRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYAN  303 (361)
Q Consensus       224 ~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~  303 (361)
                      |++|+++++..........++++||||+|+.+|++|.+||++|.++++++|++++++|+++++|.+.++|+++.+.+..+
T Consensus       173 ~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~d~~~~~el~~l~~~~~~~~~v~~~~sr~~~~~~g~~~~v~~~l~~~~~  252 (310)
T 3vo2_A          173 FRSFLWKMFLEEHEDYKFSGLAWLFLGVPTSDSLLYKEELEKMKEMAPDNFRLDFAVSREQTNAAGEKMYIQTRMAEYRE  252 (310)
T ss_dssp             HHHHHHHHHSSCCTTCCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTTHH
T ss_pred             HHHHHHHHHHhhcccccCCCcEEEEEEecChhhcccHHHHHHHHHhCCCCEEEEEEECCCCCCCCCcceehHHHHHHHHH
Confidence            99999998865433222247899999999999999999999999998779999999999988899999999999999888


Q ss_pred             HHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          304 ELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       304 ~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      ++++.+..++..||+|||++|+++++++|.+++.+.+..+++|+++|+++|||++|||
T Consensus       253 ~l~~~l~~~~~~vyvCGp~~M~~~v~~~L~~~~~~~g~~~~~~~~~l~~~~r~~~e~y  310 (310)
T 3vo2_A          253 ELWELLKKDNTYVYMCGLKGMEKGIDDIMLNLAAKDGIDWMQYKKQLKKGEQWNVEVY  310 (310)
T ss_dssp             HHHHHHTSTTEEEEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTSEEEEEC
T ss_pred             HHHHhcccCCcEEEEeCCHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHCCceEEecC
Confidence            8877776568999999999999999999999999999999999999999999999999

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=100.00  E-value=3.7e-50  Score=377.19  Aligned_cols=300  Identities=88%  Similarity=1.453  Sum_probs=248.9

Q ss_pred             hhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCcee
Q 043022           62 KVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRL  141 (361)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~  141 (361)
                      +.++........++...+.+..++.++|++++.+++++...++++|+|..+..+.|+||||+.|.+++.+.++.++.+|+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~   94 (314)
T 1fnb_A           15 KVEKHSKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRL   94 (314)
T ss_dssp             ----CCSBSCTTCCCCSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSSBCCCEE
T ss_pred             cccchhhhhcccCCccccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCCCcCCCCEEEEecCCCCcCCCcCCcee
Confidence            33444455555555566778888999999999999844444599999999877889999999999887654454667999


Q ss_pred             cccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCch
Q 043022          142 YSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGI  221 (361)
Q Consensus       142 ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGi  221 (361)
                      |||+|.|..+..+.+.++|+|+++.|.+..+..+.|.+|+||+++++|+.|.|.||+|++|.++.+..+++|||||||||
T Consensus        95 ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGI  174 (314)
T 1fnb_A           95 YSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGKEMLMPKDPNATIIMLGTGTGI  174 (314)
T ss_dssp             EECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEEEECSTTCCBSCTTCEEEEEEEGGGG
T ss_pred             EecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchhhHhhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEeCCccH
Confidence            99999985211125899999999877665555568999999999999999999999999887765556899999999999


Q ss_pred             hhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh
Q 043022          222 APFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY  301 (361)
Q Consensus       222 aP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~  301 (361)
                      |||++|+++++..........++++||||+|+.+|++|.+||+++.+++++++++++++|++++.|.|.++||++.+.+.
T Consensus       175 aP~~s~l~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~  254 (314)
T 1fnb_A          175 APFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQY  254 (314)
T ss_dssp             HHHHHHHHHHHTCCBTTBCCCSEEEEEEEESSGGGCCSHHHHHHHHHHCTTTEEEEEEETTTCBCTTCCBCCHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccccCCCCEEEEEecCCHHHhhhHHHHHHHHHhCCCcEEEEEEECCCCcccCCCceechHHHHHh
Confidence            99999999987653211111368999999999999999999999998887689999999998888888899999999887


Q ss_pred             HHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          302 ANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       302 ~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      .+.+.+.+..++..||+|||++|+++++++|.+++.+.+..+++|+++|+++|||++|||
T Consensus       255 ~~~~~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~~~~~g~~~~~~~~~l~~~~r~~~d~~  314 (314)
T 1fnb_A          255 AVELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQWNVEVY  314 (314)
T ss_dssp             HHHHHHHTTSTTEEEEEEECTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHCCcEEEecC
Confidence            776666563358899999999999999999999999999999999999999999999999

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=100.00  E-value=2.4e-49  Score=383.07  Aligned_cols=292  Identities=55%  Similarity=1.038  Sum_probs=246.4

Q ss_pred             cccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCC
Q 043022           70 MEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSA  148 (361)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p  148 (361)
                      ++.+++.+.|.+..++.++|++++.++++....++++|+|+.+. .+.|+||||+.|.+++.+.++.++++|+|||+|.|
T Consensus       108 ~~~~~p~~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p  187 (402)
T 2b5o_A          108 TDTSVPVNIYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGDLRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTR  187 (402)
T ss_dssp             ---CCCCCSSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSCCCCCTTCEEEEECSSEETTTEECCCEEEEBCSCT
T ss_pred             cccCCCcccccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCCCCcCCCCEEEEEecCCCcCCCccCceeeeccCCC
Confidence            33456666788888999999999999995555559999999876 48899999999998765444446679999999998


Q ss_pred             CCCCCCCcEEEEEEEEeeEecC-CCceecCccchhhhcCCCC-CEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHH
Q 043022          149 LGDFGDSKTVSLCVKRLVYTNE-NGEIVKGVCSNFLCDLKPG-AEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRG  226 (361)
Q Consensus       149 ~~~~~~~~~l~~~V~~~~~~~~-~~~~~~G~~S~~L~~l~~G-~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~  226 (361)
                      ..+..+++.++|+|+++.|..+ .+..+.|.+|+||+++++| |.|.|.||+|.+|.++.+..+++||||||||||||++
T Consensus       188 ~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~G~d~v~v~gP~G~~~~l~~~~~~~vvlIAgGtGIaP~~s  267 (402)
T 2b5o_A          188 HGDMEDNKTVSLCVRQLEYQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGKEMLLPDDEDATVVMLATGTGIAPFRA  267 (402)
T ss_dssp             TTTTTSSCEEEEEEECCEEECTTTCCEEECHHHHHHHTCCTTCCCEEEEEEECSTTCCCSCTTCEEEEEEEGGGGHHHHH
T ss_pred             ccccCCCCEEEEEEEEeeecccccCcCCCCchhHHHhhCCCCCceEEEEcccCCcccCCccCCCCEEEEEcccCHHHHHH
Confidence            6311126899999999776552 2334689999999999999 9999999999988777556789999999999999999


Q ss_pred             HHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHH
Q 043022          227 FLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELW  306 (361)
Q Consensus       227 ~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~  306 (361)
                      |+++++..........++++||||+|+.+|++|.+||++|.++++++|++++++|++++.|.|.++||++.+.+..++++
T Consensus       268 ~l~~l~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~~~~~~~v~~~~S~~~~~~~g~~~~v~~~l~~~~~~l~  347 (402)
T 2b5o_A          268 FLWRMFKEQHEDYKFKGKAWLIFGVPYTANILYKDDFEKMAAENPDNFRLTYAISREQKTADGGKVYVQSRVSEYADELF  347 (402)
T ss_dssp             HHHHHHTCCCSSCCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSCBCCHHHHHHHTHHHHH
T ss_pred             HHHHHHHhccccccccCCEEEEEecCCHHHhHHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCccchHHHHHHhHHHHH
Confidence            99998765422211237899999999999999999999999988778999999999988888899999999998877777


Q ss_pred             HHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          307 ELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       307 ~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +.+...+..||+|||++|+++++++|.+++...+..+++++++|+++|||++|||
T Consensus       348 ~~l~~~~~~vyvCGP~~M~~~v~~~L~~~g~~~g~~~~~~~~~m~~~~Ry~~e~~  402 (402)
T 2b5o_A          348 EMIQKPNTHVYMCGLKGMQPPIDETFTAEAEKRGLNWEEMRRSMKKEHRWHVEVY  402 (402)
T ss_dssp             HHHTSTTEEEEEEECGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEC
T ss_pred             HHhccCCcEEEEECCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHCCCEEEecC
Confidence            7664357899999999999999999999999999999999999999999999999

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=100.00  E-value=1.1e-48  Score=366.60  Aligned_cols=287  Identities=51%  Similarity=0.919  Sum_probs=233.4

Q ss_pred             cccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCC--CCCCCCceecccccCCCCC
Q 043022           74 VIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDK--NAKPHKLRLYSIASSALGD  151 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~--~~~~~~~R~ySias~p~~~  151 (361)
                      .+.+.+.|..++.++|++++.++++....++++|+|..+..+.|+||||+.|.+++.+.  +|.+.++|+|||+|+|..+
T Consensus        18 ~~~~~~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~   97 (311)
T 3lo8_A           18 PPLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGD   97 (311)
T ss_dssp             CCCCSBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTT
T ss_pred             CCccccCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCCCcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCccc
Confidence            34567889999999999999999332223399999999888899999999999986532  1335579999999998632


Q ss_pred             CCCCcEEEEEEEEeeEecCC----CceecCccchhhhcCCCCCEEEEEccCCCCcCCCC-CCCCcEEEEecCCchhhHHH
Q 043022          152 FGDSKTVSLCVKRLVYTNEN----GEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPR-DPNATVIMLATGTGIAPFRG  226 (361)
Q Consensus       152 ~~~~~~l~~~V~~~~~~~~~----~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~-~~~~~iv~Ia~GtGiaP~~~  226 (361)
                      ..+++.++|+|+++.|..+.    +..++|.+|+||+++++|+.|.|.||+|.++..+. +..+++||||||||||||++
T Consensus        98 ~~~~~~~~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s  177 (311)
T 3lo8_A           98 NFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEEDPNATHIMIATGTGVAPFRG  177 (311)
T ss_dssp             TTSSSEEEEEEECCCCCCTTTCCCCGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCCSCTTCEEEEEEEGGGGHHHHH
T ss_pred             CCCCCEEEEEEEEEEecccccCcCCcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCCcCCCCCEEEEECCEEHHHHHH
Confidence            11358999999986332211    11247999999999999999999999999887763 35689999999999999999


Q ss_pred             HHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHH
Q 043022          227 FLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELW  306 (361)
Q Consensus       227 ~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~  306 (361)
                      |+++++..........++++|||++|+.+|++|.+||++|.+++++++++++++|++++.|.+.++|+++.+.+..+++.
T Consensus       178 ~l~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~  257 (311)
T 3lo8_A          178 YLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIF  257 (311)
T ss_dssp             HHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTC-------CCHHHHHHHTHHHHH
T ss_pred             HHHHHHHhccccccCCCCEEEEEecCChHHhhHHHHHHHHHHhCCCcEEEEEEECCCCcccCCCcceehHHHHHHHHHHH
Confidence            99998865432222236899999999999999999999999988778999999999988888889999999998877776


Q ss_pred             HHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          307 ELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       307 ~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +.+. ++..||+|||+.|+++++++|.++..+.+..+++|+++|+++|||++|||
T Consensus       258 ~~~~-~~~~vyvCGp~~m~~~v~~~L~~~~~~~g~~~~~~~~~l~~~~ry~~e~y  311 (311)
T 3lo8_A          258 KLLD-GGAHIYFCGLKGMMPGIQDTLKKVAERRGESWDQKLAQLKKNKQWHVEVY  311 (311)
T ss_dssp             HHHH-TTCEEEEEECGGGHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCEEEEEC
T ss_pred             Hhhc-CCcEEEEECCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHCCcEEEecC
Confidence            6654 58999999999999999999999999988999999999999999999999

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...

Probab=100.00  E-value=2.1e-48  Score=363.58  Aligned_cols=287  Identities=53%  Similarity=0.992  Sum_probs=239.8

Q ss_pred             ccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCC
Q 043022           75 IVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFG  153 (361)
Q Consensus        75 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~  153 (361)
                      +.+.|.+..++.++|+++++++++....++++++|..+. .+.|+||||+.|.+++.+.++.++++|+|||+|+|..+..
T Consensus        12 ~~~~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~   91 (304)
T 2bmw_A           12 PVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDV   91 (304)
T ss_dssp             CCCSBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTT
T ss_pred             cccccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCccccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCC
Confidence            334667778899999999999994433449999999875 5789999999999887654555667999999999852111


Q ss_pred             CCcEEEEEEEEeeEecCC-CceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHH
Q 043022          154 DSKTVSLCVKRLVYTNEN-GEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMF  232 (361)
Q Consensus       154 ~~~~l~~~V~~~~~~~~~-~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~  232 (361)
                      +.+.++|+|+++.|..+. +..+.|.+|+||+++++|+.|.|.||+|.+|.++.+..+++||||||||||||++|+++++
T Consensus        92 ~~~~l~l~Vk~~~y~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~  171 (304)
T 2bmw_A           92 DDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEMLLPDDPEANVIMLAGGTGITPMRTYLWRMF  171 (304)
T ss_dssp             SSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSCCCSCTTCEEEEEEEGGGHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEEEEeeccccCcCCCcchhhHHhcCCCCCEEEEEeccCCceeCCCCCCCCEEEEecCccHHHHHHHHHHHH
Confidence            368999999987665422 2335799999999999999999999999988777556689999999999999999999887


Q ss_pred             hhccc----ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHH
Q 043022          233 FEKHE----DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL  308 (361)
Q Consensus       233 ~~~~~----~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~  308 (361)
                      .....    .....++++||||+|+.+|++|.+||+++.+++++++++++++|++++.|.+.++|+++.+.+..+.+.+.
T Consensus       172 ~~~~~~~~~~~~~~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~l~~~~~~l~~~  251 (304)
T 2bmw_A          172 KDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQL  251 (304)
T ss_dssp             CHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETTTCBCTTSSBCCHHHHHHHTHHHHHHH
T ss_pred             HhhhhhcccccccCCCEEEEEEeCChHhcchHHHHHHHHHhCCCcEEEEEEEcCCCCCCCCCcceehHHHHHhHHHHHHH
Confidence            54311    11113689999999999999999999999988766899999999998778888999999998877777666


Q ss_pred             hccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          309 LKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       309 l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +...+..||+|||++|+++|+++|.++....+..+++++++|+++|||++|||
T Consensus       252 ~~~~~~~vyvCGp~~m~~~v~~~l~~~~~~~g~~~~~~~~~m~~~~ry~~e~~  304 (304)
T 2bmw_A          252 IKNQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY  304 (304)
T ss_dssp             HTSTTEEEEEEECTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCEEEEEC
T ss_pred             hhcCCcEEEEECCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHcCCeEEecC
Confidence            65457899999999999999999999999889999999999999999999999

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=100.00  E-value=8.9e-47  Score=354.18  Aligned_cols=293  Identities=36%  Similarity=0.621  Sum_probs=231.7

Q ss_pred             EeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCc---------eEEEEeeCCCc-cccCCC
Q 043022           51 VRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGE---------TWHMVFSTEGE-VPYKEG  120 (361)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---------~~~l~l~~~~~-l~~~pG  120 (361)
                      ++|+..+.++....             .|.+..++.++|++++.++++....+         +++|+|..+.. +.|.||
T Consensus         1 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~~~~~~pG   67 (314)
T 2rc5_A            1 MHSLMKPTREPQIN-------------LFKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHSAYPYVIG   67 (314)
T ss_dssp             ------CCSSCCCC-------------SBBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTTTCCCCTT
T ss_pred             CCccccCccccccC-------------CCCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCCcCcccCC
Confidence            35666666665542             45566789999999999999866556         99999998874 889999


Q ss_pred             cEEEEecCCCCCCCCC-------CCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCce-ecCccchhhhcCCCCCEE
Q 043022          121 QSIGVIADGVDKNAKP-------HKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEI-VKGVCSNFLCDLKPGAEV  192 (361)
Q Consensus       121 Q~v~l~~~~~~~~~~~-------~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~-~~G~~S~~L~~l~~G~~v  192 (361)
                      ||+.|.+++...++.+       +++|+|||+|.|..+..+.+.++|+|++++|..+.+.. +.|.+|+||+++++|+.|
T Consensus        68 Q~v~l~~~~~~~~g~~~~~~~~~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~~~~~~g~~~~~G~~S~~L~~l~~Gd~v  147 (314)
T 2rc5_A           68 QSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEV  147 (314)
T ss_dssp             CEEEEECSSBCHHHHHTTCSCCBCCCEEEECCSCTTCGGGCCCEEEEEEECCBCC--CCSCSSBCHHHHHHHTCCTTCEE
T ss_pred             CEEEEECCCCccccCccchhhcCCCceeeeccCCccccCCCCCEEEEEEEEEeecCCCCCcCCCcchHHHHhcCCCcCEE
Confidence            9999998764221212       46899999999851100367999999997544332222 368999999999999999


Q ss_pred             EEEccCCCCcCCCC-CCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCC
Q 043022          193 KITGPVGKEMLMPR-DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP  271 (361)
Q Consensus       193 ~i~gP~G~~~~~~~-~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~  271 (361)
                      .|.||+|.+|.++. +..+++||||||||||||++|++++......  ...++++||||+|+.+|++|.+||+++.++++
T Consensus       148 ~v~gP~G~~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~l~~~~~~--~~~~~v~l~~g~r~~~d~~~~~el~~l~~~~~  225 (314)
T 2rc5_A          148 TMTGPSGKKFLLPNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLI--KFTGNITLVYGAPYSDELVMMDYLKGLESKHK  225 (314)
T ss_dssp             EEEEEECSSSCCCSSCBCSCEEEEEEGGGGHHHHHHHHHHHTTCSS--CBCSCEEEEEEESSGGGSCSHHHHHHHHHHHS
T ss_pred             EEEeccCCceeCCCCCCCCCEEEEECCccHHHHHHHHHHHHHhccc--CCCCcEEEEEEeCCHHHHhHHHHHHHHHHhCC
Confidence            99999999887764 4568999999999999999999998764311  11368999999999999999999999988777


Q ss_pred             CceEEEEEecCCcccC-CCCeeEecchHHHhHHHHHHHhccCCeEEEEE-CCcchHHHHHHHHHHHHHccCCCHHHHHHH
Q 043022          272 ENFRLDFAVSREQKNE-KGEKMYIQTRMAEYANELWELLKKDNTYVYMC-GLRGMEKGIDDIMVSLAANDGIDWLDYKKQ  349 (361)
Q Consensus       272 ~~~~~~~~~s~~~~~~-~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvC-Gp~~m~~~v~~~L~~~g~~~~~~~~~~~~~  349 (361)
                       ++++++++|++++.| .|.++||++.+.+..+.+.+.+...+.. |+| ||++|++++++.|.+++. .++++|.|..+
T Consensus       226 -~~~~~~~~s~~~~~~~~g~~~~v~~~l~~~~~~l~~~~~~~~~~-yvCGGp~~m~~~v~~~L~~~g~-~~i~~e~f~~~  302 (314)
T 2rc5_A          226 -NFKLITAISREEKNSFDGGRMYISHRVREQAEAVKKILNGGGRF-YICGGPKGMEKGVIEEIQKISG-NTGTYEEFKHH  302 (314)
T ss_dssp             -SEEEEEEETTTCBCTTTSSBCCHHHHHHHTHHHHHHHHHHTCEE-EEEESSTTTHHHHHHHHHHHHT-CCSCHHHHHHH
T ss_pred             -cEEEEEEECCCCCcccCCCceehhHHHHHhHHHHHHHhhcCCeE-EEeCCcHHHHHHHHHHHHHHHh-ccchHHHHHHH
Confidence             999999999986554 6788999999988766665555323444 999 999999999999999988 67999999999


Q ss_pred             HHHcCCeeEeeC
Q 043022          350 LKKSEQWNVEVY  361 (361)
Q Consensus       350 l~~~~r~~~ev~  361 (361)
                      |+++|||++|+|
T Consensus       303 l~~~gr~~~e~~  314 (314)
T 2rc5_A          303 LEGAHQLFVETY  314 (314)
T ss_dssp             HHHTTCEEEEEC
T ss_pred             HHHCCCEEEecC
Confidence            999999999999

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*

Probab=100.00  E-value=2e-47  Score=372.42  Aligned_cols=303  Identities=25%  Similarity=0.408  Sum_probs=231.6

Q ss_pred             ceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhh--hccccccccc-ccccccCCCCeeEEEEeEeeec
Q 043022           22 TSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVE--KESKKMEEGV-IVNKFKPKTPYIGRCLLNTKIT   96 (361)
Q Consensus        22 ~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~   96 (361)
                      .+.|||+|+|++++|++|+||++  +|+++..+++++++...+..  .+.....++. ....|.-.  -.-+++++-..-
T Consensus       138 ~~~p~~~~~tl~~~l~~~~di~~~p~~~~l~~la~~a~~~~ek~~L~~l~~~~~~~~~~~~~~~~~--~~~~ildvL~~f  215 (458)
T 3qfs_A          138 KKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVVE--ARRHILAILQDC  215 (458)
T ss_dssp             CCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHHHSCSHHHHHHHHHHTTT--TTCCHHHHHHHS
T ss_pred             cCCCCCCCeeHHHHHHhcEeccCCCCHHHHHHHHHHcCCHHHHHHHHHHhccCcccHHHHHHHHhh--cCCCHHHHHHhC
Confidence            45689999999999999999999  78999999999998877663  2222111110 00111110  000111111111


Q ss_pred             CCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceec
Q 043022           97 GDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVK  176 (361)
Q Consensus        97 ~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~  176 (361)
                                     | .....+++++.+..        ++++|+|||+|+|..   +++.++|+|+.+.|++..++.+.
T Consensus       216 ---------------p-s~~~p~~~ll~~lp--------~l~pR~YSIsSsp~~---~~~~i~ltV~vv~~~~~~~r~~~  268 (458)
T 3qfs_A          216 ---------------P-SLRPPIDHLCELLP--------RLQARYYSIASSSKV---HPNSVHICAVVVEYETKAGRINK  268 (458)
T ss_dssp             ---------------T-TBCCCHHHHHHHSC--------BCCCEEEECCSCTTT---CTTEEEEEEECCEEECTTSCEEE
T ss_pred             ---------------C-ccCCCHHHHHhhCC--------CCcceeEeeccCccc---CCCEEEEEEEEEEecCCCCCCCC
Confidence                           1 11122233333332        568999999999964   47899999999988887788899


Q ss_pred             CccchhhhcCCCCC------EEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEe
Q 043022          177 GVCSNFLCDLKPGA------EVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLG  250 (361)
Q Consensus       177 G~~S~~L~~l~~G~------~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g  250 (361)
                      |.+|+||+++.+|+      .|.+.+|.|. |.+|.+..+|+||||||||||||++|++++......+ ...++++||||
T Consensus       269 G~~S~~L~~l~~gg~~~~~~~v~v~~p~g~-F~lp~~~~~piImIggGTGIAPfrs~lq~r~~l~~~g-~~~~~~~Lf~G  346 (458)
T 3qfs_A          269 GVATNWLRAKEPVGENGGRALVPMFVRKSQ-FRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQG-KEVGETLLYYG  346 (458)
T ss_dssp             CHHHHHHHTCCSSCSSCCCCEEEEEEECCS-CCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHHT-CCCCCEEEEEE
T ss_pred             CchhHHHHhhccCCccCCceEEEEEecCCC-cccCCCCCCceEEEcCCcchhhHHHHHHHHHHHHhcC-CCCCCEEEEEE
Confidence            99999999977654      6999999995 6777667789999999999999999998754211110 01368999999


Q ss_pred             ccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHHHH
Q 043022          251 VPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEKGI  328 (361)
Q Consensus       251 ~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~~v  328 (361)
                      +|+. +|++|.+||++|.+++. .+++++++||++.    .++|||+++.+..+++++++. +++.||||||+ .|+++|
T Consensus       347 ~R~~~~D~ly~dEl~~l~~~g~-l~~l~~a~SRd~~----~k~yVqd~l~~~~~~l~~~l~-~~~~vYvCGp~~~M~~~V  420 (458)
T 3qfs_A          347 CRRSDEDYLYREELAQFHRDGA-LTQLNVAFSREQS----HKVYVQHLLKQDREHLWKLIE-GGAHIYVCGDARNMARDV  420 (458)
T ss_dssp             ESCTTTSCTTHHHHHHHHHHTS-SSEEEEEETTSSS----SCCCHHHHHHHTHHHHHHHHH-TTCEEEEEEETTTHHHHH
T ss_pred             eCCchHhhhHHHHHHHHHHcCC-CCEEEEEEECCCC----CcccHhHHHHHhHHHHHHHhc-CCCEEEEECCCHHHHHHH
Confidence            9997 69999999999998865 6699999999864    789999999998888888886 68999999996 799999


Q ss_pred             HHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          329 DDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       329 ~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +++|.++..+.+    ..+++|+++|+++|||++|||
T Consensus       421 ~~~L~~i~~~~g~~~~~~A~~~~~~l~~~~RY~~Dvw  457 (458)
T 3qfs_A          421 QNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW  457 (458)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCeEEEec
Confidence            999999988765    568999999999999999999

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=100.00  E-value=8.9e-48  Score=382.53  Aligned_cols=310  Identities=19%  Similarity=0.293  Sum_probs=230.7

Q ss_pred             cceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeeec
Q 043022           21 RTSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKIT   96 (361)
Q Consensus        21 ~~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~   96 (361)
                      ..|.|+|.|||++++|++|+||++  +++++..+++++++...+...  +....+.+. ...|...  -..+++++-.. 
T Consensus       196 ~~p~~~p~~~tl~~~L~~~lDi~~~p~~~~l~~la~~a~d~~ek~~L~~l~s~~~~~~-~~~~~~~--~~~~lldvL~~-  271 (539)
T 2qtl_A          196 TLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAAD-YSRFVRD--ACACLLDLLLA-  271 (539)
T ss_dssp             CCCTTSCTTCBHHHHHHHTBCTTSCCCHHHHHHHHTTBCSHHHHHHHHHHHSSTTHHH-HHHHTTT--TTCCHHHHHHH-
T ss_pred             cCCCCCCCcccHHHHHHHHhhhcCCCCHHHHHHHHHHcCCHHHHHHHHHHhChhhHHH-HHHHHhh--cCCCHHHHHHh-
Confidence            345678899999999999999999  899999999999998877632  222111100 0011110  00011111111 


Q ss_pred             CCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEec--CCCce
Q 043022           97 GDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTN--ENGEI  174 (361)
Q Consensus        97 ~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~--~~~~~  174 (361)
                                    .| ... .|+|++...++       ++++|+|||+|+|..   +++.++|+|+++.|+.  ..++.
T Consensus       272 --------------fp-s~~-~p~~~ll~~lp-------~l~~R~YSIsSsp~~---~~~~i~ltV~~v~~~~~~~~~~~  325 (539)
T 2qtl_A          272 --------------FP-SCQ-PPLSLLLEHLP-------KLQPRPYSCASSSLF---HPGKLHFVFNIVEFLSTATTEVL  325 (539)
T ss_dssp             --------------ST-TBC-CCHHHHHHHSC-------BCCCEEEECCSCTTT---STTEEEEEEECCEEECSCSSCSE
T ss_pred             --------------CC-CcC-CCHHHHHHhCc-------CCcceEEeecCCccC---CCCEEEEEEEEEEeccCCCCCcC
Confidence                          11 011 23454444454       447999999999853   4789999999998854  34566


Q ss_pred             ecCccchhhhcC-----------CCCC-------EEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcc
Q 043022          175 VKGVCSNFLCDL-----------KPGA-------EVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH  236 (361)
Q Consensus       175 ~~G~~S~~L~~l-----------~~G~-------~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~  236 (361)
                      +.|.+|+||+++           ++|+       .|.|.+|.|+.|.++.+..+|+||||||||||||++|++++.....
T Consensus       326 ~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~g~~F~Lp~~~~~piImIg~GTGIAPfrsflq~r~~~~~  405 (539)
T 2qtl_A          326 RKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQE  405 (539)
T ss_dssp             EECHHHHHHHHHTTTTC--------------CCCEEEEEECSCCCCCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHH
T ss_pred             CCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeeeCCCccCCccCCCCEEEEEcCccHHHHHHHHHHHHHHHh
Confidence            889999999985           8999       9999999986678887777899999999999999999988643221


Q ss_pred             cc-cccCCeEEEEEeccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcc--cCCCCeeEecchHHHhHHHHHHHhccC
Q 043022          237 ED-YKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQK--NEKGEKMYIQTRMAEYANELWELLKKD  312 (361)
Q Consensus       237 ~~-~~~~~~i~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~--~~~g~~~~v~~~l~~~~~~~~~~l~~~  312 (361)
                      .+ ....++++||||+|+. .|++|.+||++|.+.+. ++++++++||++.  .|.+.++|||+.|.+..+++++++..+
T Consensus       406 ~~~~~~~~~v~LffG~R~~~~D~ly~dEL~~~~~~g~-~~~l~~afSRd~~~~~~~g~k~yVqd~l~e~~~~l~~~l~~~  484 (539)
T 2qtl_A          406 QHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGI-LTHLKVSFSRDAPVGEEEAPAKYVQDNIQLHGQQVARILLQE  484 (539)
T ss_dssp             HCTTCCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTS-SCEEEEEESSSCC------CCCSHHHHHHHTHHHHHHHHHHS
T ss_pred             ccccCCCCCEEEEEEECCcchhhHHHHHHHHHHHhCC-CcEEEEEEccCCCccccCCCccchhHHHHHhHHHHHHhhccC
Confidence            10 0114789999999999 69999999999998876 7899999999864  366789999999999998888888335


Q ss_pred             CeEEEEECCc-chHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          313 NTYVYMCGLR-GMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       313 ~~~vyvCGp~-~m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +++||||||+ .|+++|.++|.++..+.+    ..+++|+++|+++|||++|||
T Consensus       485 ~a~vYVCGp~~~M~~~V~~~L~~i~~~~~~~~~~~A~~~l~~l~~~~RY~~Dvw  538 (539)
T 2qtl_A          485 NGHIYVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIW  538 (539)
T ss_dssp             CCEEEEEESCHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred             CcEEEEECCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence            8899999998 999999999999887754    568899999999999999999

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*

Probab=100.00  E-value=2.3e-44  Score=344.25  Aligned_cols=269  Identities=30%  Similarity=0.555  Sum_probs=232.0

Q ss_pred             cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCC-----------CC------------
Q 043022           78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVD-----------KN------------  133 (361)
Q Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~-----------~~------------  133 (361)
                      .|....++.++|++++++++.....++++++|+.+. .+.|.||+++.|.+.+..           .+            
T Consensus         5 ~~~~~~~~~a~v~~~~~lt~~~~~~~~~hi~~~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~~~~~~~v~~~~~~~   84 (374)
T 1ddg_A            5 PYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTL   84 (374)
T ss_dssp             CCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEETTEEE
T ss_pred             CCCCCCCEEEEEEEEEEeCCCCCCceEEEEEEEcCCCCcccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCceEEECCCCc
Confidence            456677899999999999998888899999999854 689999999999987621           00            


Q ss_pred             ----------------------------------------------------------------------CCCCCceecc
Q 043022          134 ----------------------------------------------------------------------AKPHKLRLYS  143 (361)
Q Consensus       134 ----------------------------------------------------------------------~~~~~~R~yS  143 (361)
                                                                                            ..++++|+||
T Consensus        85 tl~~~l~~~~di~~p~~~~l~~la~~~~~~~L~~l~~~~~~~~~~~~~~~~~~vl~~~p~~~~~Gq~v~l~~~~~~R~YS  164 (374)
T 1ddg_A           85 PLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYS  164 (374)
T ss_dssp             EHHHHHHHHBCCSCCCHHHHHHHHHHHTCTTTGGGTTCTHHHHHHHHHSCHHHHHHHSCCCCCHHHHHHHSCBCCCEEEE
T ss_pred             cHHHHHHhcccCCCCCHHHHHHHHHHCCCHHHHHHhcChHHHHHHHcCCCHHHHHHHCCCCCCHHHHHhhccCCCCccce
Confidence                                                                                  0134789999


Q ss_pred             cccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchh
Q 043022          144 IASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIA  222 (361)
Q Consensus       144 ias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGia  222 (361)
                      |+|+|..   +++.++|+|+++.|++. ++.++|.+|+||++ +++|+.|.+.||.++.|.++.+..+|+||||||||||
T Consensus       165 IaSsp~~---~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~g~F~lp~~~~~piimIa~GtGIA  240 (374)
T 1ddg_A          165 IASSQAE---VENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIA  240 (374)
T ss_dssp             BCCCTTT---SCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSSCEEEEEEECCTTSCCCSSTTSCEEEECCGGGGH
T ss_pred             ecCCCCC---CCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCCCEEEEEEeeCCCccCCCCCCCCEEEEECCccHH
Confidence            9999863   37899999999988765 66678999999999 9999999999966655777766778999999999999


Q ss_pred             hHHHHHHHHHhhcccccccCCeEEEEEeccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh
Q 043022          223 PFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY  301 (361)
Q Consensus       223 P~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~  301 (361)
                      ||++|++++...+.     .++++||||+|+. +|++|.+||++|.+++. ++++++++|+++.    .++|||+++.+.
T Consensus       241 P~~s~l~~~~~~~~-----~~~~~L~~G~R~~~~d~ly~~El~~~~~~~~-~~~l~~a~Srd~~----~k~yVq~~l~~~  310 (374)
T 1ddg_A          241 PFRAFMQQRAADEA-----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGV-LTRIDLAWSRDQK----EKVYVQDKLREQ  310 (374)
T ss_dssp             HHHHHHHHHHHHTC-----CSCEEEEEEESCHHHHCTTHHHHHHHHHTTS-CCEEEEEETTSSS----SCCCHHHHHHHT
T ss_pred             HHHHHHHHHHhcCC-----CCCEEEEEEeCCchhhhhHHHHHHHHHHhCC-CcEEEEEEecCCC----CCccHHHHHHHh
Confidence            99999998876542     3789999999998 69999999999998876 7899999999864    678999999988


Q ss_pred             HHHHHHHhccCCeEEEEEC-CcchHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          302 ANELWELLKKDNTYVYMCG-LRGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       302 ~~~~~~~l~~~~~~vyvCG-p~~m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      .+++++++. +++.||+|| |+.|+++|.++|.++..+.+    ..+++|+++|+++|||++|||
T Consensus       311 ~~~l~~~l~-~~~~vYvCG~p~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv~  374 (374)
T 1ddg_A          311 GAELWRWIN-DGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY  374 (374)
T ss_dssp             HHHHHHHHH-TTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHh-CCcEEEEECCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCeEEecC
Confidence            888888876 589999999 88999999999999998875    568899999999999999999

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*

Probab=100.00  E-value=1.7e-44  Score=338.70  Aligned_cols=274  Identities=28%  Similarity=0.496  Sum_probs=218.1

Q ss_pred             ccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCC------------------
Q 043022           71 EEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDK------------------  132 (361)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~------------------  132 (361)
                      +++...+.|.|..++.|+|+++++++....+.++++|+|+.++.++|.||||+.|.+++.+.                  
T Consensus         2 ~~~~~~~~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   81 (316)
T 3jqq_A            2 EENNFINLYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGLFKYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTT   81 (316)
T ss_dssp             ---CCBTSSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTTCCCCCTTCEEEECTTCC--------------------
T ss_pred             CCCCceeeecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCCCcceecCcEeEEECCCccccccccccccccccccccc
Confidence            34556789999999999999999999888888899999999989999999999999987641                  


Q ss_pred             ------------CCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC---CCceecCccchhhhcCCCCCEEEEEcc
Q 043022          133 ------------NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE---NGEIVKGVCSNFLCDLKPGAEVKITGP  197 (361)
Q Consensus       133 ------------~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~---~~~~~~G~~S~~L~~l~~G~~v~i~gP  197 (361)
                                  .+....+|+|||+|+|.     .+.++|+|+++.|..+   .++.++|.+|+||+++++|+.|.|+||
T Consensus        82 ~~~~h~~~~~~~~~g~~~~R~ySIaS~p~-----~~~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP  156 (316)
T 3jqq_A           82 NHTNHNNIALSHIKKQRCARLYSISSSNN-----MENLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGA  156 (316)
T ss_dssp             ---------------CCCCEEEEBCSCTT-----SSSEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEE
T ss_pred             ccccccccccccCCCcccceeeecccCCC-----CCeEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEec
Confidence                        11234799999999984     4789999998765432   223457999999999999999999999


Q ss_pred             CCCCcCCCCC---CCCcEEEEecCCchhhHHHHHHHHHhhccc-----ccccCCeEEEEEeccCCcccccHHHHHHHHHh
Q 043022          198 VGKEMLMPRD---PNATVIMLATGTGIAPFRGFLWKMFFEKHE-----DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEK  269 (361)
Q Consensus       198 ~G~~~~~~~~---~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~-----~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~  269 (361)
                      +|. |.++.+   ..+++||||||||||||++|++++......     .....++++||||+|+.++++|.+||++|.++
T Consensus       157 ~G~-f~l~~~~~~~~~~vvlIAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R~~~d~~~~~eL~~l~~~  235 (316)
T 3jqq_A          157 HGY-FNLPNDAIQKNTNFIFIATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVYNEDSILYLNELEYFQKM  235 (316)
T ss_dssp             ECC-CCCCTTHHHHTCCEEEEEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEESSGGGCTTHHHHHHHHHH
T ss_pred             CCc-eEcCCcccCCCCcEEEEeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEecCHHHhhcHHHHHHHHHh
Confidence            998 555544   268999999999999999999998865321     00113789999999999999999999999998


Q ss_pred             CCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHH
Q 043022          270 APENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQ  349 (361)
Q Consensus       270 ~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~  349 (361)
                      ++++|++++++|++ +.|.+.++||++.+.+..+++++++...+..||+|||++|+++++++|.+.|.-.          
T Consensus       236 ~~~~~~~~~~~s~~-~~~~g~~g~V~~~l~~~~~~~~~~l~~~~~~vyvCGP~~m~~~v~~~l~~~G~~~----------  304 (316)
T 3jqq_A          236 YPNNINIHYVFSYK-QNSDATSFYVQDEIYKRKTEFLNLFNNYKCELYICGKKSIRYKVMDILKSHDQFD----------  304 (316)
T ss_dssp             CTTTEEEEEEEGGG-CC---CBCCHHHHHHHTHHHHHHHHHHTCCEEEEEECSTHHHHHHHHHHC----C----------
T ss_pred             CCCcEEEEEEECCC-cccCCCccchhHHHHHhHHHHHHhhccCCeEEEEeCCHHHHHHHHHHHHHcCCCc----------
Confidence            87789999999998 5678899999999998877776666445889999999999999999999887311          


Q ss_pred             HHHcCCeeEeeC
Q 043022          350 LKKSEQWNVEVY  361 (361)
Q Consensus       350 l~~~~r~~~ev~  361 (361)
                      .....|++.|+|
T Consensus       305 ~v~~~rih~E~f  316 (316)
T 3jqq_A          305 EKKKKRVHVEVY  316 (316)
T ss_dssp             HHHHTTEEEEEC
T ss_pred             ccccccEEEEeC
Confidence            134579999987

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=100.00  E-value=9.3e-47  Score=362.68  Aligned_cols=298  Identities=26%  Similarity=0.373  Sum_probs=224.2

Q ss_pred             ceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeeecC
Q 043022           22 TSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITG   97 (361)
Q Consensus        22 ~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   97 (361)
                      ..+|+|.|+|++++|++ +||++  +|+++..+++++++++.+.+.  +..+++  .....+.+. .   +++++-..  
T Consensus        81 ~~~p~~~~~tl~~~l~~-~di~~~~~~~~l~~la~~~~~~~~~~~L~~l~~~~~--~~~~~~~~~-~---~~ldvL~~--  151 (393)
T 4dql_A           81 AHLPLAKTVSVEELLQY-VELQDPVTRTQLRAMAAKTVCPPHKVELEALLEKQA--YKEQVLAKR-L---TMLELLEK--  151 (393)
T ss_dssp             ------CCEEHHHHTTS-BCSSSBCCHHHHHHHHHTCCSHHHHHHHHHTTSHHH--HHHHTTTTT-C---BHHHHHHH--
T ss_pred             ccCCCCCcEEHHHHHHh-ccccCCCCHHHHHHHHHhCCCHHHHHHHHHHhCchH--HHHHHhccC-C---CHHHHHHh--
Confidence            46789999999999999 99999  999999999999887766532  222211  000001111 0   11111110  


Q ss_pred             CCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCC-ceec
Q 043022           98 DDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENG-EIVK  176 (361)
Q Consensus        98 ~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~-~~~~  176 (361)
                                   .| ...+.+||++.+.+        ++++|+|||+|+|..   +++.++|+|+++++++..+ ..+.
T Consensus       152 -------------fp-s~~~p~~~~l~~lp--------~l~~R~YSIsSsp~~---~~~~i~l~v~vv~~~~~~g~~~~~  206 (393)
T 4dql_A          152 -------------YP-ACEMKFSEFIALLP--------SIRPRYYSISSSPRV---DEKQASITVSVVSGEAWSGYGEYK  206 (393)
T ss_dssp             -------------CT-TCCCCHHHHHHTSC--------BCCCEEEECCSCTTT---CTTEEEEEEECCEEECTTSSSEEE
T ss_pred             -------------CC-CCCCCHHHHHHhCC--------CCcceeeeccccccc---cCceEEEEEEEEecccCCCCcccC
Confidence                         01 12355677777643        458999999999964   4689999999998765433 2567


Q ss_pred             CccchhhhcCCCCCEEE--EEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCC
Q 043022          177 GVCSNFLCDLKPGAEVK--ITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS  254 (361)
Q Consensus       177 G~~S~~L~~l~~G~~v~--i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~  254 (361)
                      |.+|+||+++++|+.|.  |.||+|. |.++.+..+|+||||||||||||++|++++......+ ...++++||||+|++
T Consensus       207 G~~S~~L~~l~~Gd~v~v~v~~P~g~-F~lp~~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g-~~~~~v~L~~G~R~~  284 (393)
T 4dql_A          207 GIASNYLAELQEGDTITCFISTPQSE-FTLPKDPETPLIMVGPGTGVAPFRGFVQARKQLKEQG-QSLGEAHLYFGCRSP  284 (393)
T ss_dssp             CHHHHHHHHCCTTCEEEEEEECCSSC-CCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTT-CCCCCEEEEEEESCT
T ss_pred             CccchhHHhCCCcCEEEEEEEcCCCC-cccCccCCCCeEEEccCceechHHHHHHHHHHHHhcC-CCCCCEEEEEEECCc
Confidence            99999999999999988  6899996 6667667789999999999999999998753322111 113689999999995


Q ss_pred             -cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHHHHHHHH
Q 043022          255 -SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEKGIDDIM  332 (361)
Q Consensus       255 -~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~~v~~~L  332 (361)
                       +|++|.+||++|.+. + ++++++++||++..   .++|||+++.+..+++++++. ++++||+|||. .|.++|+++|
T Consensus       285 ~~d~ly~~el~~~~~~-~-~l~l~~a~Sr~~~~---~k~yVq~~l~~~~~~l~~~l~-~~~~vYvCGp~~~M~~~V~~~L  358 (393)
T 4dql_A          285 HEDYLYQEELENAQSE-G-IITLHTAFSRMPNQ---PKTYVQHVMEQDGKKLIELLD-QGAHFYICGDGSQMAPAVEATL  358 (393)
T ss_dssp             TTCCTTHHHHHHHHHT-T-SCEEEEEESSCTTS---CCCCHHHHHHHTHHHHHHHHH-TTCEEEEEEETTTHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHhC-C-CeEEEEEEeCCCCC---CCcchhhHHHhCHHHHHHHHh-CCcEEEEECCchhhHHHHHHHH
Confidence             699999999999876 3 89999999995432   689999999999888888876 68999999985 7888999999


Q ss_pred             HHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          333 VSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       333 ~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      .++..+.+    ..+++|+++|+++|||++|||
T Consensus       359 ~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~dv~  391 (393)
T 4dql_A          359 MKSYADVHQVSEADARLWLQQLEEKGRYAKDVW  391 (393)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHCCCEEEEec
Confidence            99876543    568999999999999999999

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=100.00  E-value=1.4e-46  Score=366.47  Aligned_cols=299  Identities=24%  Similarity=0.307  Sum_probs=227.4

Q ss_pred             eecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeeecCC
Q 043022           23 SIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGD   98 (361)
Q Consensus        23 ~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   98 (361)
                      +.|+| |||++++|++|+||++  +++++..+++++++...+...  +..++++ .  ..|..  .-...          
T Consensus       120 ~~~~p-~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~-~--~~~~~--~~~~~----------  183 (435)
T 1f20_A          120 ESRLP-PCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQE-Y--EEWKW--GKNPT----------  183 (435)
T ss_dssp             CCSSC-SBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTTCSHH-H--HHHHH--HHCCC----------
T ss_pred             cCCCC-CccHHHHHHhceecCCCCCHHHHHHHHHHCCCHHHHHHHHHhhcCHHH-H--HHHHh--ccCCC----------
Confidence            45788 9999999999999999  899999999999998877632  2222221 0  01100  00001          


Q ss_pred             CCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC--CCc
Q 043022           99 DAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE--NGE  173 (361)
Q Consensus        99 ~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~--~~~  173 (361)
                           +..+..+.|.   ++.+.+||     ++       ++++|+|||+|+|..   +++.++|+|+++.|..+  .++
T Consensus       184 -----i~~vl~~fps~~~p~~~l~~~-----lp-------~l~~R~YSIsSsp~~---~~~~i~l~v~vv~~~~~~g~~~  243 (435)
T 1f20_A          184 -----MVEVLEEFPSIQMPATLLLTQ-----LS-------LLQPRYYSISSSPDM---YPDEVHLTVAIVSYHTRDGEGP  243 (435)
T ss_dssp             -----HHHHHHHSTTBCBCHHHHHHH-----SC-------BCCCEEEECCSCTTT---STTEEEEEEECCEEECGGGTSC
T ss_pred             -----HHHHHHhCCcCCCCHHHHHHh-----CC-------CCCCccccccCCccc---CCCeEEEEEEEEEEecCCCCCc
Confidence                 1111112221   12232332     33       347999999999863   36899999998877654  345


Q ss_pred             eecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccC
Q 043022          174 IVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPT  253 (361)
Q Consensus       174 ~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~  253 (361)
                      .+.|.+|+||+++++|+.|.|.||.++.|.++.+..+|+||||||||||||++|++++...........++++||||+|+
T Consensus       244 ~~~G~~S~~L~~l~~Gd~v~v~~~~~g~F~lp~~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R~  323 (435)
T 1f20_A          244 VHHGVCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQ  323 (435)
T ss_dssp             EEECHHHHHHTTCCTTCEEEEEEECCTTSSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESC
T ss_pred             ccCCccchhHhhCCCCCEEEEEEecCCCccCCCCCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeecc
Confidence            77899999999999999999999554446777666789999999999999999999876532100011478999999999


Q ss_pred             Cc-ccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh-HHHHHHHhccCCeEEEEECCcchHHHHHHH
Q 043022          254 SS-SLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY-ANELWELLKKDNTYVYMCGLRGMEKGIDDI  331 (361)
Q Consensus       254 ~~-d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~-~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~  331 (361)
                      .+ |++|.+||++|.+.+. ++++++++|+++..   .++|||+++.+. .+++++.+..+++.||+|||+.|+++|.++
T Consensus       324 ~~~d~ly~~El~~~~~~~~-~~~l~~a~Sr~~~~---~k~yVq~~l~~~l~~~~~~~l~~~~~~vYvCGp~~M~~~V~~~  399 (435)
T 1f20_A          324 SKIDHIYREETLQAKNKGV-FRELYTAYSREPDR---PKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKA  399 (435)
T ss_dssp             TTTSCTTHHHHHHHHHTTS-EEEEEEEESSCTTS---CCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEECHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHcCC-ccEEEEEECCCCCC---CCcchhhHHHhhhHHHHHHHHhcCCcEEEEeCChhHHHHHHHH
Confidence            97 8999999999998776 78999999998642   378999999887 667777663358899999999999999999


Q ss_pred             HHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          332 MVSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       332 L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      |.+++.+.+    ..+++|+++|+++|||++|||
T Consensus       400 L~~i~~~~~~~~~~~a~~~~~~l~~~~RY~~Dv~  433 (435)
T 1f20_A          400 IQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF  433 (435)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence            999998865    568899999999999999999

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=100.00  E-value=3.3e-47  Score=389.28  Aligned_cols=308  Identities=23%  Similarity=0.361  Sum_probs=237.6

Q ss_pred             ceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeeecC
Q 043022           22 TSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITG   97 (361)
Q Consensus        22 ~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   97 (361)
                      .+.|||.|||++++|++|+||++  +|++|..+++++++.+.+...  +..++++ .  ..|.-...  -+++++-..-+
T Consensus       333 ~~~p~p~~~tl~~~l~~~ldi~~~p~~~~l~~la~~a~~~~~k~~L~~l~~~~~~-~--~~~~~~~~--~~i~dvL~~fp  407 (682)
T 2bpo_A          333 VKVPFPTPTTIGAAIKHYLEITGPVSRQLFSSLIQFAPNADVKEKLTLLSKDKDQ-F--AVEITSKY--FNIADALKYLS  407 (682)
T ss_dssp             CCCSSCSSEEHHHHHHHTBCCSSCCCHHHHHHHSTTCSSHHHHHHHHHHTTCHHH-H--HHHTGGGT--CCHHHHHHHHH
T ss_pred             cCCCCCCCccHHHHHHHhhhccCCCCHHHHHHHHHHCCCHHHHHHHHHhccCHHH-H--HHHHhcCC--CCHHHHHHhcc
Confidence            35689999999999999999999  899999999999998877632  2222221 0  01111000  01111100000


Q ss_pred             CCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCC---Cce
Q 043022           98 DDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNEN---GEI  174 (361)
Q Consensus        98 ~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~---~~~  174 (361)
                                   .+......|+|++...+|       ++++|+|||+|+|..   +++.++|+|+++.|+++.   ++.
T Consensus       408 -------------~~~~s~~~p~~~l~~~lp-------~l~~R~YSIsSsp~~---~~~~i~ltv~Vv~~~~~~~~~~~~  464 (682)
T 2bpo_A          408 -------------DGAKWDTVPMQFLVESVP-------QMTPRYYSISSSSLS---EKQTVHVTSIVENFPNPELPDAPP  464 (682)
T ss_dssp             -------------TTCCCTTSCHHHHHHHSC-------BCCCEEEEBCSCTTT---CTTEEEEEEECCEECCSSCTTSCC
T ss_pred             -------------CcccccCCCHHHHHHhCc-------ccccccccccCCccc---CCCeEEEEEEEEEEecCcccCCcc
Confidence                         000112467888777776       448999999999974   468999999988887764   567


Q ss_pred             ecCccchhhhcCCC------------CCEEEEEccCCCC-------------cCCCCCCCCcEEEEecCCchhhHHHHHH
Q 043022          175 VKGVCSNFLCDLKP------------GAEVKITGPVGKE-------------MLMPRDPNATVIMLATGTGIAPFRGFLW  229 (361)
Q Consensus       175 ~~G~~S~~L~~l~~------------G~~v~i~gP~G~~-------------~~~~~~~~~~iv~Ia~GtGiaP~~~~l~  229 (361)
                      +.|.+|+||+++++            |+.|.|.||+|.+             |.+|.+..+|+||||+|||||||++|++
T Consensus       465 ~~G~~S~~L~~l~~g~~~~~~~~~~~G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~~~~~piImIg~GTGIAPfrs~lq  544 (682)
T 2bpo_A          465 VVGVTTNLLRNIQLAQNNVNIAETNLPVHYDLNGPRKLFANYKLPVHVRRSNFRLPSNPSTPVIMIGPGTGVAPFRGFIR  544 (682)
T ss_dssp             EECHHHHHHHHHHHHHTTCCTTTSCCCCCCCSSCGGGTTTTTEECEEEECCSCCCCSSTTSCEEEEEEGGGGHHHHHHHH
T ss_pred             cCccccHHHHhcccccccccccccccccceeeccCcCcccCceEEEEEecCcccCCCCCCCCEEEEecCcChHHHHHHHH
Confidence            89999999998766            9999999999985             5667666789999999999999999999


Q ss_pred             HHHhhccc-----ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHH
Q 043022          230 KMFFEKHE-----DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANE  304 (361)
Q Consensus       230 ~~~~~~~~-----~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~  304 (361)
                      ++......     .....++++||||+|+.+|++|.+||++|..+.+.++++++++||++.   +.++|||++|.+..++
T Consensus       545 ~r~~~~~~~~~~~~g~~~~~~~L~fG~R~~~D~ly~dEl~~~~~~~g~~~~l~~afSr~d~---~~k~yVqd~l~e~~~~  621 (682)
T 2bpo_A          545 ERVAFLESQKKGGNNVSLGKHILFYGSRNTDDFLYQDEWPEYAKKLDGSFEMVVAHSRLPN---TKKVYVQDKLKDYEDQ  621 (682)
T ss_dssp             HHHHHHHTCC----CCCCCCEEEEEEESSSSSCTTTTTHHHHHHHHGGGEEEEEEESCCTT---SCCCCHHHHHHHTHHH
T ss_pred             HHHHhhcccccccccCCcCCEEEEEecCChhhhhhHHHHHHHHHhcCCceEEEEEECCCCC---CCCcchHHHHHhhHHH
Confidence            87754320     111147899999999999999999999995443338999999999532   3789999999999888


Q ss_pred             HHHHhccCCeEEEEECC-cchHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          305 LWELLKKDNTYVYMCGL-RGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       305 ~~~~l~~~~~~vyvCGp-~~m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +++++. +++.|||||| +.|+++|.++|.++..+.+    ..+++|+++|+++|||++|||
T Consensus       622 l~~~l~-~~~~vYvCGpa~~M~~~V~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~Ry~~Dvw  682 (682)
T 2bpo_A          622 VFEMIN-NGAFIYVCGDAKGMAKGVSTALVGILSRGKSITTDEATELIKMLKTSGRYQEDVW  682 (682)
T ss_dssp             HHHHHT-TTCEEEEEECSTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred             HHHHHh-CCcEEEEeCCchHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCEEEEeC
Confidence            888885 6899999999 6999999999999988765    567999999999999999999

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=100.00  E-value=1.1e-45  Score=374.29  Aligned_cols=303  Identities=25%  Similarity=0.403  Sum_probs=233.0

Q ss_pred             ceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--ccccccccc-ccccccCCCCeeEEEEeEeeec
Q 043022           22 TSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGV-IVNKFKPKTPYIGRCLLNTKIT   96 (361)
Q Consensus        22 ~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~   96 (361)
                      .+.|||+|||++++|++|+||++  +|+++..+++++++...+...  +..+..++. ....|.-  .-.-+++++-...
T Consensus       298 ~~~~~p~~~tl~~~l~~~~di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~--~~~~~i~dvL~~f  375 (618)
T 3qe2_A          298 KKHPFPCPTSYRTALTYYLDITNPPRTNVLYELAQYASEPSEQELLRKMASSSGEGKELYLSWVV--EARRHILAILQDC  375 (618)
T ss_dssp             CCSSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHHTTCSSSHHHHHHHHHTT--TTTCCHHHHHHHS
T ss_pred             CCCCCCCceEHHHhhhhEeecCCCCcHHHHHHHHHHcCCHHHHHHHHHhhccChhhHHHHHHHHh--hcCCCHHHHHHhC
Confidence            45689999999999999999999  888999999999988777632  221111111 0011111  0001111111111


Q ss_pred             CCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceec
Q 043022           97 GDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVK  176 (361)
Q Consensus        97 ~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~  176 (361)
                      +.                .. .|.+++.-.++       ++++|+|||+|+|..   +++.++|+|+++.|+++.++.+.
T Consensus       376 ps----------------~~-~p~~~l~~~lp-------~l~pR~YSIsSsp~~---~~~~i~ltv~vv~~~~~~~~~~~  428 (618)
T 3qe2_A          376 PS----------------LR-PPIDHLCELLP-------RLQARYYSIASSSKV---HPNSVHICAVVVEYETKAGRINK  428 (618)
T ss_dssp             TT----------------BC-CCHHHHHHHSC-------BCCCEEEECCSCTTT---CTTEEEEEEECCEEECTTSCEEE
T ss_pred             Cc----------------cC-CCHHHHHHhcc-------ccccceeccccCCcC---CCCEEEEEEEEEEEecCCCCCCC
Confidence            11                01 13444333333       568999999999974   57899999999989887788899


Q ss_pred             CccchhhhcCCC-CC-----EEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEe
Q 043022          177 GVCSNFLCDLKP-GA-----EVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLG  250 (361)
Q Consensus       177 G~~S~~L~~l~~-G~-----~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g  250 (361)
                      |.+|+||+++.+ |+     .|.|.+|.|. |.+|.+..+|+||||||||||||++|++++......+. ..++++||||
T Consensus       429 G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g~-F~lp~~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~-~~~~~~L~~G  506 (618)
T 3qe2_A          429 GVATNWLRAKEPVGENGGRALVPMFVRKSQ-FRLPFKATTPVIMVGPGTGVAPFIGFIQERAWLRQQGK-EVGETLLYYG  506 (618)
T ss_dssp             CHHHHHHHTCCCC-----CCEEEEEEECCS-CCCCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTTC-CCCCEEEEEE
T ss_pred             CcccHHHHhhcccCCCCcceEEEEEEecCc-ccCCCCCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCC-CCCCEEEEEe
Confidence            999999999777 88     9999999995 67776777899999999999999999998764321111 1378999999


Q ss_pred             ccCC-cccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHHHH
Q 043022          251 VPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEKGI  328 (361)
Q Consensus       251 ~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~~v  328 (361)
                      +|+. .|++|.+||++|.+.+. .+++++++||++.    .++|||+++.+..+++++++. +++.||||||+ .|+++|
T Consensus       507 ~R~~~~D~ly~~el~~~~~~g~-l~~l~~a~Srd~~----~k~yVqd~l~~~~~~l~~~l~-~~a~vYvCGp~~~M~~~V  580 (618)
T 3qe2_A          507 CRRSDEDYLYREELAQFHRDGA-LTQLNVAFSREQS----HKVYVQHLLKQDREHLWKLIE-GGAHIYVCGDARNMARDV  580 (618)
T ss_dssp             ESCTTTSCTTHHHHHHHHHHTS-SSEEEEEETTSSS----SCCCHHHHHHHTHHHHHHHHH-HTCEEEEEEETTTHHHHH
T ss_pred             cCCCccccchHHHHHHHHhcCC-CcEEEEEEcCCCC----CCCcHHHHHHHhHHHHHHHHh-CCcEEEEECCchHHHHHH
Confidence            9999 59999999999998864 5699999999864    689999999999888888875 68999999996 999999


Q ss_pred             HHHHHHHHHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          329 DDIMVSLAANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       329 ~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      .++|.++..+++    ..+++|+++|+++|||++|||
T Consensus       581 ~~~L~~i~~~~g~~~~~~a~~~~~~l~~~~RY~~Dv~  617 (618)
T 3qe2_A          581 QNTFYDIVAELGAMEHAQAVDYIKKLMTKGRYSLDVW  617 (618)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCeEEeec
Confidence            999999988765    568899999999999999999

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=100.00  E-value=1.4e-43  Score=362.48  Aligned_cols=301  Identities=24%  Similarity=0.302  Sum_probs=229.2

Q ss_pred             ecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhh--cccccccccccccccCCCCeeEEEEeEeeecCCC
Q 043022           24 IISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEK--ESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDD   99 (361)
Q Consensus        24 ~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   99 (361)
                      .|+| |||++++|++|+||++  +++++..+++++++...+...  +..++++.- ...+.+              ..+ 
T Consensus       342 ~~~p-~~tl~~~l~~~lDi~~~p~~~~l~~la~~a~~~~ek~~L~~l~~~~~~~~-~~~~~~--------------~~~-  404 (688)
T 1tll_A          342 SRLP-PCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQEYE-EWKWGK--------------NPT-  404 (688)
T ss_dssp             CSSC-SBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTTCSHHHH-HHHHHH--------------CCC-
T ss_pred             CCCC-CccHHHHHHhheeCCCCCCHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHH-HHHhhc--------------CCC-
Confidence            4778 9999999999999999  999999999999998877632  222222100 000011              001 


Q ss_pred             CCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC--CCceecC
Q 043022          100 APGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE--NGEIVKG  177 (361)
Q Consensus       100 ~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~--~~~~~~G  177 (361)
                          +..+..+.|. .. .|+||+...++       ++++|+|||+|+|..   +++.++|+|+++.|..+  .++.+.|
T Consensus       405 ----i~evl~~fps-~~-~p~~~l~~~lp-------~l~~R~YSIsSsp~~---~~~~i~l~V~vv~~~~~~g~~~~~~G  468 (688)
T 1tll_A          405 ----MVEVLEEFPS-IQ-MPATLLLTQLS-------LLQPRYYSISSSPDM---YPDEVHLTVAIVSYHTRDGEGPVHHG  468 (688)
T ss_dssp             ----HHHHHHHSTT-BC-CCHHHHHHHSC-------BCCCEEEEBCSCTTT---STTEEEEEEECCEEETGGGTSCEEEC
T ss_pred             ----HHHHHHhCCC-cC-CCHHHHHHhCc-------ccceeEEeecCCccc---CCCeEEEEEEEEEEecCCCCCCcCCC
Confidence                2222222221 01 24555555555       347999999999863   36899999998877653  3457789


Q ss_pred             ccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCc-c
Q 043022          178 VCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSS-S  256 (361)
Q Consensus       178 ~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~-d  256 (361)
                      .+|+||+++++|+.|.|.+|.+..|.++.+..+|+||||||||||||++|++++...........++++||||+|+.+ |
T Consensus       469 ~~S~~L~~l~~Gd~v~v~~~p~g~F~lp~~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R~~~~D  548 (688)
T 1tll_A          469 VCSSWLNRIQADDVVPCFVRGAPSFHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKID  548 (688)
T ss_dssp             HHHHHHTTCCTTSEEEEEEECCGGGSCCSCTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEESCTTTT
T ss_pred             chhHHHHhCCCCCEEEEEeccCCCcccCcCCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEeccchhh
Confidence            999999999999999999955545677766678999999999999999999987654110001147899999999998 8


Q ss_pred             cccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh-HHHHHHHhccCCeEEEEECCcchHHHHHHHHHHH
Q 043022          257 LLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY-ANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSL  335 (361)
Q Consensus       257 ~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~-~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~  335 (361)
                      ++|.+||++|.+.+. ++++++++|+++..   .++|||++|.+. .++++..+..++.+||||||+.|+++|.++|.++
T Consensus       549 ~ly~dEL~~~~~~~~-~~~l~~a~Sr~~~~---~k~yVq~~l~~~l~~~l~~~l~~~~~~vYvCGp~~M~~~V~~~L~~i  624 (688)
T 1tll_A          549 HIYREETLQAKNKGV-FRELYTAYSREPDR---PKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRI  624 (688)
T ss_dssp             CTTHHHHHHHHHTTS-EEEEEEEESSCTTS---CCCCHHHHHHHSSHHHHHHHHHTSCCEEEEEEEHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCC-ceEEEEEECCCCCC---CccchhhhhHHhHHHHHHHhhccCCcEEEEeCCHHHHHHHHHHHHHH
Confidence            999999999998876 78999999998643   378999999887 6777776633588999999999999999999998


Q ss_pred             HHccC----CCHHHHHHHHHHcCCeeEeeC
Q 043022          336 AANDG----IDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       336 g~~~~----~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      ....+    ..+++|+++|+..+||+.|+|
T Consensus       625 ~~~~gg~~~~~a~~~l~~l~~~~ry~~Evf  654 (688)
T 1tll_A          625 MTQQGKLSEEDAGVFISRLRDDNRYHEDIF  654 (688)
T ss_dssp             HHTTTCCCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHcCCCCHHHHHHHHHhhhhcCCEEEEec
Confidence            65543    579999999999999999998

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=100.00  E-value=4.6e-39  Score=292.05  Aligned_cols=224  Identities=20%  Similarity=0.286  Sum_probs=191.5

Q ss_pred             cCCCCeeEEEEeEeeecCCCCCCceEEEEeeC-C-C----ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCC
Q 043022           80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFST-E-G----EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFG  153 (361)
Q Consensus        80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~-~-~----~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~  153 (361)
                      .+...+.++|++++.++++     +++|+|.. + .    .+.|.||||+.|.+++.      ...|+|||+|.|.    
T Consensus         6 ~~~~~~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~~~~~~~pGQ~v~l~~~~~------~~~R~ySi~s~~~----   70 (250)
T 1tvc_A            6 GEVGSFEAEVVGLNWVSSN-----TVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGT------DVSRSYSPANLPN----   70 (250)
T ss_dssp             CCSSEEEEEBCCCEEEETT-----EEEEEECSSTTSSSSSCCSCCSCCEEEECTTSC------SSSEEECCBCCSS----
T ss_pred             CCcceEEEEEEEEEEcCCC-----eEEEEEEecCCCCcccccCcCCCcEEEEEeCCC------ccccccccCCCCC----
Confidence            3455788999999999999     99999998 7 5    56799999999998652      2689999999986    


Q ss_pred             CCcEEEEEEEEeeEecCCCceecCccchhhh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHH
Q 043022          154 DSKTVSLCVKRLVYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMF  232 (361)
Q Consensus       154 ~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~  232 (361)
                      +.+.++|+|++++         +|.+|+||+ ++++|++|.|.||+|+++..+ +..+++|||||||||||+++|++++.
T Consensus        71 ~~~~l~i~vk~~~---------~G~~s~~l~~~l~~Gd~v~v~gP~G~~~~~~-~~~~~~vliagGtGiaP~~~~l~~l~  140 (250)
T 1tvc_A           71 PEGRLEFLIRVLP---------EGRFSDYLRNDARVGQVLSVKGPLGVFGLKE-RGMAPRYFVAGGTGLAPVVSMVRQMQ  140 (250)
T ss_dssp             SSCCEEEEECCCT---------TSSSHHHHHHHSSSSSEEEEEEEECCCSCCC-CSSSCEEEEEESSTTHHHHHHHHHHH
T ss_pred             CCCeEEEEEEECC---------CCCchHHHHhcCCCCCEEEEEcCccccccCc-cCCceEEEEEeccCHHHHHHHHHHHH
Confidence            4689999999876         799999997 699999999999999876543 44579999999999999999999987


Q ss_pred             hhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccC
Q 043022          233 FEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKD  312 (361)
Q Consensus       233 ~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~  312 (361)
                      ..+.     ..+++|+|++|+.+|++|.+||++|.++++ ++++++++|+++++|.|.+++|++.+.+...+   ..  .
T Consensus       141 ~~~~-----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~l~~~~~~---~~--~  209 (250)
T 1tvc_A          141 EWTA-----PNETRIYFGVNTEPELFYIDELKSLERSMR-NLTVKACVWHPSGDWEGEQGSPIDALREDLES---SD--A  209 (250)
T ss_dssp             HHTC-----CSCEEEEEECSSSTTCCCHHHHHHHHHHSS-SCEEEECCSSCSSCCSSSSSSSSHHHHHHHHH---SS--S
T ss_pred             hcCC-----CceEEEEEEeCCHHHhhhHHHHHHHHHhCC-CeEEEEEeccCCCCcCCccceehHHHHhhhhc---cc--C
Confidence            6531     368999999999999999999999998877 89999999998777888889998877653321   12  4


Q ss_pred             CeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022          313 NTYVYMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       313 ~~~vyvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                      +..+|+|||+.|++++++.|.+.|...
T Consensus       210 ~~~vyvCGp~~m~~~v~~~l~~~G~~~  236 (250)
T 1tvc_A          210 NPDIYLCGPPGMIDAACELVRSRGIPG  236 (250)
T ss_dssp             SSEEEEESSHHHHHHHHHHHHHHCCCC
T ss_pred             CcEEEEeCCHHHHHHHHHHHHHcCCCH
Confidence            779999999999999999999888764

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=100.00  E-value=1.1e-38  Score=302.18  Aligned_cols=248  Identities=21%  Similarity=0.325  Sum_probs=202.4

Q ss_pred             ceeEEEeeecccCccchhhhcccccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcE
Q 043022           46 GRVVSVRAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQS  122 (361)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~  122 (361)
                      .++++|+||..+.++.+++.......      .-.+...+.++|++++.++++     +++|+|..+.   .+.|.||||
T Consensus        76 ~~g~~LaCq~~~~~~~~v~~~~~~~~------~~~~~~~~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~~~~pGQ~  144 (338)
T 1krh_A           76 QQGYVLACQCRPTSDAVFQIQASSEV------CKTKIHHFEGTLARVENLSDS-----TITFDIQLDDGQPDIHFLAGQY  144 (338)
T ss_dssp             HHTEEETTTCEESSSEEEEESSCTTG------GGCCCEEEEEEEEEEEESSSS-----EEEEEEEECTTCCCCCCCTTCE
T ss_pred             hCCeEEEEeCEECCCeEEEEeccccc------ccCCceEEEEEEEEEEEcCCC-----EEEEEEEeCCCCCCCCcCCCCe
Confidence            34679999999998876653111111      012344678999999999999     9999999876   577999999


Q ss_pred             EEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhh-cCCCCCEEEEEccCCCC
Q 043022          123 IGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKE  201 (361)
Q Consensus       123 v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~  201 (361)
                      +.|.+++.      ...|+|||+|.|     ..+.++|+|++++         +|.+|+||+ ++++|+.|.|.||+|++
T Consensus       145 v~l~~~~~------~~~R~ySi~s~~-----~~~~l~~~vk~~~---------~G~~S~~L~~~l~~Gd~v~v~gP~G~f  204 (338)
T 1krh_A          145 VNVTLPGT------TETRSYSFSSQP-----GNRLTGFVVRNVP---------QGKMSEYLSVQAKAGDKMSFTGPFGSF  204 (338)
T ss_dssp             EEEECTTS------SCEEEEECCSCT-----TCSEEEEEEECCT---------TCHHHHHHHTTCCTTCEEEEEEEECSC
T ss_pred             EEEEcCCC------CccccccccCCC-----CCCeEEEEEEEcC---------CCCchhhHhhccCCCCEEEEECCccce
Confidence            99998753      268999999998     3579999999976         799999997 59999999999999997


Q ss_pred             cCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEec
Q 043022          202 MLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVS  281 (361)
Q Consensus       202 ~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s  281 (361)
                      ++.+ + .+++|||||||||||+++|++++...+.     ..+++|+|++|+.+|++|.++|++|.++++ +++++++++
T Consensus       205 ~~~~-~-~~~~vliagGtGiaP~~s~l~~l~~~~~-----~~~v~l~~~~r~~~d~~~~~el~~l~~~~~-~~~~~~~~s  276 (338)
T 1krh_A          205 YLRD-V-KRPVLMLAGGTGIAPFLSMLQVLEQKGS-----EHPVRLVFGVTQDCDLVALEQLDALQQKLP-WFEYRTVVA  276 (338)
T ss_dssp             SCCC-C-SSCEEEEEEGGGHHHHHHHHHHHHHHCC-----SSCEEEEEEESSGGGCCCHHHHHHHHHHCT-TEEEEEEET
T ss_pred             EeCC-C-CceEEEEEccccHhHHHHHHHHHHHcCC-----CCeEEEEEEeCCHHHhhhHHHHHHHHHhCC-CeEEEEEEe
Confidence            6543 3 3899999999999999999999886542     368999999999999999999999998888 899999999


Q ss_pred             CCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022          282 REQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       282 ~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                      +++..|. .+++|++.+.+.      .+...+..+|+|||+.|++++++.|.+.|...
T Consensus       277 ~~~~~~~-~~g~v~~~l~~~------~~~~~~~~vy~CGp~~m~~~v~~~l~~~G~~~  327 (338)
T 1krh_A          277 HAESQHE-RKGYVTGHIEYD------WLNGGEVDVYLCGPVPMVEAVRSWLDTQGIQP  327 (338)
T ss_dssp             TCCSSSS-EESCSGGGCCGG------GGGGGCSEEEEEEEHHHHHHHHHHHHHHTCCC
T ss_pred             cCCCCCC-ccCccCHHHHHh------hcccCCcEEEEECCHHHHHHHHHHHHHcCCCH
Confidence            9766554 678888877631      11113678999999999999999999988764

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=100.00  E-value=9.8e-39  Score=286.56  Aligned_cols=218  Identities=17%  Similarity=0.224  Sum_probs=180.9

Q ss_pred             eeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEE
Q 043022           85 YIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKR  164 (361)
Q Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~  164 (361)
                      +.++|++++.++++     +++++|..++.+.|+||||+.|.+++       ...|+|||+|.|.    +.+.++|+|++
T Consensus         3 ~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~pGq~v~l~~~~-------~~~R~ySi~s~~~----~~~~l~l~i~~   66 (232)
T 1qfj_A            3 LSCKVTSVEAITDT-----VYRVRIVPDAAFSFRAGQYLMVVMDE-------RDKRPFSMASTPD----EKGFIELHIGA   66 (232)
T ss_dssp             EEEEEEEEEESSSS-----CEEEEEEESSCCCCCTTCEEEEESSS-------SCEEEEECCSCTT----STTCEEEEEC-
T ss_pred             eEEEEEEEEecCCC-----EEEEEEecCCCCCcCCCCEEEEECCC-------CceeeeecCCCCC----CCCcEEEEEEE
Confidence            57899999999998     99999998877889999999999874       2689999999986    56799999999


Q ss_pred             eeEecCCCceecCccchh-hhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCC
Q 043022          165 LVYTNENGEIVKGVCSNF-LCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNG  243 (361)
Q Consensus       165 ~~~~~~~~~~~~G~~S~~-L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~  243 (361)
                      ++         +|.+|++ +..+++||+|.|.||+|+++..+ +..+++|||||||||||+++|++++...+.     ..
T Consensus        67 ~~---------~G~~s~~~~~~l~~Gd~v~v~gP~G~~~~~~-~~~~~~vliagG~GitP~~~~l~~l~~~~~-----~~  131 (232)
T 1qfj_A           67 SE---------INLYAKAVMDRILKDHQIVVDIPHGEAWLRD-DEERPMILIAGGTGFSYARSILLTALARNP-----NR  131 (232)
T ss_dssp             --------------CCHHHHHHHHHHSEEEEEEEECSCCCCS-CSSSCEEEEEETTCHHHHHHHHHHHHHHCT-----TC
T ss_pred             cc---------CCchhHHHHHhCCCCCEEEEeCCccceEeCC-CCCCcEEEEEecccHhHHHHHHHHHHhcCC-----CC
Confidence            85         6777776 45599999999999999876543 346899999999999999999999886532     36


Q ss_pred             eEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc
Q 043022          244 LAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG  323 (361)
Q Consensus       244 ~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~  323 (361)
                      +++|+|++|+.+|++|.+||+++..+++ +++++.++++++++|.+.++++++.+.+..      ...++..+|+|||++
T Consensus       132 ~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~~~~~~------~~~~~~~vyvCGp~~  204 (232)
T 1qfj_A          132 DITIYWGGREEQHLYDLCELEALSLKHP-GLQVVPVVEQPEAGWRGRTGTVLTAVLQDH------GTLAEHDIYIAGRFE  204 (232)
T ss_dssp             CEEEEEEESSGGGCTTHHHHHHHHHHCT-TEEEEEEESSCCTTCCSEESCHHHHHHHHC------SCCTTCEEEEESCHH
T ss_pred             cEEEEEeeCCHHHhhhHHHHHHHHHHCC-CeEEEEEEcCCCCCcCCceeeHHHHHHHhc------CCccccEEEEECCHH
Confidence            8999999999999999999999998888 899999999988788888888876665421      122478899999999


Q ss_pred             hHHHHHHHH-HHHHHccC
Q 043022          324 MEKGIDDIM-VSLAANDG  340 (361)
Q Consensus       324 m~~~v~~~L-~~~g~~~~  340 (361)
                      |++++++.| .+.|....
T Consensus       205 m~~~v~~~l~~~~g~~~~  222 (232)
T 1qfj_A          205 MAKIARDLFCSERNARED  222 (232)
T ss_dssp             HHHHHHHHHHHHSCCCGG
T ss_pred             HHHHHHHHHHHHcCCCHH
Confidence            999999999 88877653

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=100.00  E-value=6.8e-38  Score=283.00  Aligned_cols=228  Identities=21%  Similarity=0.270  Sum_probs=188.8

Q ss_pred             cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCc
Q 043022           80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSK  156 (361)
Q Consensus        80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~  156 (361)
                      .|.....++|++++.++++     +++++|..+.   .+.|+||||+.|.++..+    ....|+|||+|.+.    +.+
T Consensus         7 ~~~~~~~~~v~~~~~~t~~-----~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~g----~~~~R~ysi~s~~~----~~~   73 (243)
T 2eix_A            7 NPNEYKKFMLREKQIINHN-----TRLFRFNLHHPEDVVGLPIGQHMSVKATVDG----KEIYRPYTPVSSDD----EKG   73 (243)
T ss_dssp             CSSSCEEEEEEEEEEEETT-----EEEEEEECSSTTCCCCCCTTCEEEEEEEETT----EEEEEEECCCSCTT----CCS
T ss_pred             CCCceEEEEEEEEEEeCCC-----eEEEEEEcCCCCcccCcCCceEEEEEEeeCC----CEEEeeeeecCCCC----CCC
Confidence            4566789999999999999     9999999865   467999999999986321    23689999999986    578


Q ss_pred             EEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcc
Q 043022          157 TVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH  236 (361)
Q Consensus       157 ~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~  236 (361)
                      .++|+|++++         +|.+|+||+++++||+|.|.||+|++ .++.+..++++||||||||||+++|++++.....
T Consensus        74 ~~~l~vk~~~---------~G~~S~~l~~l~~Gd~v~v~gP~G~f-~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~  143 (243)
T 2eix_A           74 YFDLIIKVYE---------KGQMSQYIDHLNPGDFLQVRGPKGQF-DYKPNMVKEMGMIAGGTGITPMLQVARAIIKNPK  143 (243)
T ss_dssp             EEEEEEECCT---------TCHHHHHHHTCCTTCEEEEEEEECSC-CCCTTSSSEEEEEEEGGGHHHHHHHHHHHHTCTT
T ss_pred             EEEEEEEEcC---------CCCcchHhhcCCCCCEEEEECCeEEE-EeCCCCCcEEEEEecCccHHHHHHHHHHHHhCCC
Confidence            9999999875         79999999999999999999999984 4443456899999999999999999999875421


Q ss_pred             cccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEE
Q 043022          237 EDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYV  316 (361)
Q Consensus       237 ~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~v  316 (361)
                      .    ..+++|+|++|+.+|++|.+||++|.++++ ++++++++++++++|.+.++++++.+.+   ++..... .+..+
T Consensus       144 ~----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~g~~g~v~~~~l~---~~~~~~~-~~~~v  214 (243)
T 2eix_A          144 E----KTIINLIFANVNEDDILLRTELDDMAKKYS-NFKVYYVLNNPPAGWTGGVGFVSADMIK---QHFSPPS-SDIKV  214 (243)
T ss_dssp             C----CCEEEEEEEEEEGGGCTTHHHHHHHHHHCT-TEEEEEEEEECCTTCCSEESSCCHHHHH---HHSCCTT-SSEEE
T ss_pred             C----CcEEEEEEEcCCHHHhhHHHHHHHHHHHCC-CeEEEEEeCCCCccccCcCCccCHHHHH---HhcCCCC-CCeEE
Confidence            1    368999999999999999999999998888 9999999998877787788888754321   1111111 46789


Q ss_pred             EEECCcchHHHHHHHHHHHHHcc
Q 043022          317 YMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       317 yvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                      |+|||++|++++++.|.+.|...
T Consensus       215 y~CGp~~m~~~v~~~l~~~G~~~  237 (243)
T 2eix_A          215 MMCGPPMMNKAMQGHLETLGYTP  237 (243)
T ss_dssp             EEESSHHHHHHHHHHHHHHTCCG
T ss_pred             EEECCHHHHHHHHHHHHHcCCCH
Confidence            99999999999999999888764

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.6e-37  Score=287.93  Aligned_cols=241  Identities=20%  Similarity=0.383  Sum_probs=188.6

Q ss_pred             CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCCCC-------------------------C
Q 043022           81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGVDK-------------------------N  133 (361)
Q Consensus        81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~~~-------------------------~  133 (361)
                      +...+.++|++++.++++     +++|+|..+.  .++|+||||+.|.++....                         .
T Consensus         6 ~~~~~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~   80 (290)
T 2r6h_A            6 GVKEWECEVLSNKNVSTF-----IKEFVVKLPEGETMNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCK   80 (290)
T ss_dssp             CCCEEEEEEEEEEESSSS-----EEEEEEECSTTCCCCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEE
T ss_pred             cceEEEEEEEEeeecCCC-----eEEEEEEcCCCCccccCCCceEEEEcccccccccccccchhhccccccccccccccc
Confidence            345678999999999999     9999999875  5789999999999874200                         0


Q ss_pred             CCCCCceecccccCCCCCCCCCcEEEEEEEEeeE--ecCC----CceecCccchhhhcCCCCCEEEEEccCCCCcCCCCC
Q 043022          134 AKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY--TNEN----GEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRD  207 (361)
Q Consensus       134 ~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~--~~~~----~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~  207 (361)
                      ......|+|||+|.|.    +.+.++|+|+....  ....    .+...|.+|+||+++++||+|.|.||+|.++..  +
T Consensus        81 ~~~~~~R~ySi~s~~~----~~~~l~l~v~~~~~~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~f~~~--~  154 (290)
T 2r6h_A           81 NEEETVRAYSMANYPA----EGNIITLNVRIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGDFHIQ--D  154 (290)
T ss_dssp             ECSCEEEEEECCSCTT----CCSEEEEEEECCCCCEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECCCCCC--S
T ss_pred             CCCCcceeeeccCCCC----CCCEEEEEEEEeccccccccccccccCCCcchhhHHhcCCCCCEEEEEecccCCcCC--C
Confidence            0134689999999986    56899999997310  0000    011279999999999999999999999997643  3


Q ss_pred             CCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCC--cc
Q 043022          208 PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSRE--QK  285 (361)
Q Consensus       208 ~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~--~~  285 (361)
                      ..+++||||||||||||++|+++++.....    ..+++|+|++|+.+|++|.+||+++..+++ ++++++++|++  ++
T Consensus       155 ~~~~~vliagGtGitP~~s~l~~~~~~~~~----~~~v~l~~~~r~~~d~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~  229 (290)
T 2r6h_A          155 TDAEMLYIGGGAGMAPLRAQILHLFRTLKT----GRKVSYWYGARSKNEIFYEEDFREIEREFP-NFKFHIALSDPQPED  229 (290)
T ss_dssp             SSCEEEEEEEGGGHHHHHHHHHHHHHTSCC----CSCEEEEEEESSGGGCCSHHHHHHHHHHCT-TEEEEEEESSCCGGG
T ss_pred             CCCeEEEEECccCHHHHHHHHHHHHHhcCC----CCcEEEEEEcCCHHHHHHHHHHHHHHHhCC-CeEEEEEEccCCccc
Confidence            568999999999999999999987764321    368999999999999999999999998887 89999999986  35


Q ss_pred             cCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022          286 NEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       286 ~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                      .|.+.+++|++.+.+..  +.+....++..+|+|||+.|++++++.|.+.|...
T Consensus       230 ~~~g~~g~v~~~~~~~~--l~~~~~~~~~~vyvCGp~~m~~~v~~~l~~~G~~~  281 (290)
T 2r6h_A          230 NWTGYVGFIHQVIYDNY--LKDHDAPEDIEYYMCGPGPMANAVKGMLENLGVPR  281 (290)
T ss_dssp             CCCSCBSCHHHHHHHHT--TTTCSCGGGEEEEEECCHHHHHHHHHHHHHHTCCG
T ss_pred             CCCCeeEecCHHHHHhH--HhhccCcCCcEEEEECCHHHHHHHHHHHHHcCCCH
Confidence            67777888877663311  11111113678999999999999999999988764

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=100.00  E-value=8.3e-38  Score=287.63  Aligned_cols=239  Identities=21%  Similarity=0.264  Sum_probs=191.6

Q ss_pred             cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCc
Q 043022           80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSK  156 (361)
Q Consensus        80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~  156 (361)
                      .|.....++|++++.++++     +++++|..+.   .+.|.||||+.|.++..+    ....|+|||+|.+.    +.+
T Consensus        12 ~~~~~~~~~V~~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g----~~~~R~ySi~s~~~----~~~   78 (275)
T 1umk_A           12 SPDIKYPLRLIDREIISHD-----TRRFRFALPSPQHILGLPVGQHIYLSARIDG----NLVVRPYTPISSDD----DKG   78 (275)
T ss_dssp             CTTCCEEEEEEEEEECSSS-----EEEEEEECSSTTCBCCCCTTCEEEEEEEETT----EEEEEEECCSSCTT----CCS
T ss_pred             CCCccEEEEEEEEEEcCCC-----eEEEEEEcCCcccccCCCCCcEEEEEEeeCC----cEEEeccccCCccC----CCC
Confidence            4667889999999999999     9999999764   367999999999975322    34689999999986    578


Q ss_pred             EEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcC-------CCC--------CCCCcEEEEecCCch
Q 043022          157 TVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEML-------MPR--------DPNATVIMLATGTGI  221 (361)
Q Consensus       157 ~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~-------~~~--------~~~~~iv~Ia~GtGi  221 (361)
                      .++|+|+++.+........+|.+|+||+++++||.|.|.||+|.+++       ++.        ...+++|||||||||
T Consensus        79 ~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~~~f~l~~~~~~~~~~~~~~~~vliagGtGI  158 (275)
T 1umk_A           79 FVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGI  158 (275)
T ss_dssp             EEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEEEETTEEEECSSTTSCCEEEECSEEEEEEEGGGH
T ss_pred             eEEEEEEEeccCcccccCCCChhHHHHhcCCCCCEEEEEcCccceEecCCccccccccccccccccCCceEEEEecCccH
Confidence            99999998732221111236999999999999999999999998633       221        135799999999999


Q ss_pred             hhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHh
Q 043022          222 APFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEY  301 (361)
Q Consensus       222 aP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~  301 (361)
                      ||+++|++++.....    ...+++|+|++|+.+|++|.+||++|.++++++++++++++++...|.+.+++|++.+.+ 
T Consensus       159 aP~~~~l~~l~~~~~----~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~g~v~~~~l~-  233 (275)
T 1umk_A          159 TPMLQVIRAIMKDPD----DHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIR-  233 (275)
T ss_dssp             HHHHHHHHHHHTCTT----CCCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEESSCCSSCSSEESSCCHHHHH-
T ss_pred             hHHHHHHHHHHhCCC----CCcEEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEcCCCccccCccCccCHHHHH-
Confidence            999999999875421    137899999999999999999999999888767999999999877788888888875422 


Q ss_pred             HHHHHHHhccCCeEEEEECCcchHH-HHHHHHHHHHHcc
Q 043022          302 ANELWELLKKDNTYVYMCGLRGMEK-GIDDIMVSLAAND  339 (361)
Q Consensus       302 ~~~~~~~l~~~~~~vyvCGp~~m~~-~v~~~L~~~g~~~  339 (361)
                        +...... ++..+|+|||+.|++ ++++.|.++|...
T Consensus       234 --~~l~~~~-~~~~vyvCGp~~m~~~~v~~~L~~~G~~~  269 (275)
T 1umk_A          234 --DHLPPPE-EEPLVLMCGPPPMIQYACLPNLDHVGHPT  269 (275)
T ss_dssp             --HHSCCGG-GCCEEEEESCHHHHHHTTHHHHHHHTCCG
T ss_pred             --HhcCCCC-CCeEEEEECCHHHHHHHHHHHHHHcCCCH
Confidence              1111111 468999999999999 9999999988764

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=100.00  E-value=1.6e-37  Score=281.45  Aligned_cols=239  Identities=19%  Similarity=0.222  Sum_probs=189.8

Q ss_pred             CeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022           84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK  163 (361)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~  163 (361)
                      ...++|++++.++++     +++|+|. +..+.|.||||+.|.++..+    ....|+|||+|.|.     ++.++|+|+
T Consensus         4 ~~~~~V~~~~~~~~~-----~~~l~l~-~~~~~~~pGq~v~l~~~~~g----~~~~R~ySi~s~~~-----~~~l~~~v~   68 (248)
T 1fdr_A            4 WVTGKVTKVQNWTDA-----LFSLTVH-APVLPFTAGQFTKLGLEIDG----ERVQRAYSYVNSPD-----NPDLEFYLV   68 (248)
T ss_dssp             EEEEEEEEEEECSSS-----EEEEEEE-CCCCCCCTTCEEEEEECC-------CEEEEEECCSCTT-----CSSEEEEEE
T ss_pred             eEEEEEEEEEEcCCC-----EEEEEEe-CCCCCcCCCCcEEEEccCCC----CeeeeeecccCCCC-----CCcEEEEEE
Confidence            567999999999998     9999997 45678999999999987422    34689999999984     478999999


Q ss_pred             EeeEecCCCceecCccchhhhcCCCCCEEEEE-ccCCCCcCCCCC-CCCcEEEEecCCchhhHHHHHHHHHhhccccccc
Q 043022          164 RLVYTNENGEIVKGVCSNFLCDLKPGAEVKIT-GPVGKEMLMPRD-PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF  241 (361)
Q Consensus       164 ~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~-gP~G~~~~~~~~-~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~  241 (361)
                      .++         +|.+|+||+++++||+|.|. ||+|.+ .++.. ..++++||||||||||+++|++++...+.     
T Consensus        69 ~~~---------~G~~s~~l~~l~~Gd~v~v~~gP~G~f-~l~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~-----  133 (248)
T 1fdr_A           69 TVP---------DGKLSPRLAALKPGDEVQVVSEAAGFF-VLDEVPHCETLWMLATGTAIGPYLSILRLGKDLDR-----  133 (248)
T ss_dssp             CCT---------TCSSHHHHHTCCTTCEEEEESSCBCCC-SGGGSCCCSEEEEEEEGGGGHHHHHHHHHCCSCTT-----
T ss_pred             EeC---------CCchhhHHHhCCCcCEEEEecCCccee-EcCCCCCCceEEEEEecccHHHHHHHHHHHHhhCC-----
Confidence            875         79999999999999999999 999984 44333 26899999999999999999998754321     


Q ss_pred             CCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhH-HHHHHH-hccCCeEEEEE
Q 043022          242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYA-NELWEL-LKKDNTYVYMC  319 (361)
Q Consensus       242 ~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~-~~~~~~-l~~~~~~vyvC  319 (361)
                      ..+++|+|++|+.+|++|.+||+++.+++++++++++++|+++. +.+.++++++.+.+.. ++.... ...++..+|+|
T Consensus       134 ~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~s~~~~-~~~~~g~v~~~l~~~~l~~~~~~~~~~~~~~vy~C  212 (248)
T 1fdr_A          134 FKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRETA-AGSLTGRIPALIESGELESTIGLPMNKETSHVMLC  212 (248)
T ss_dssp             CSEEEEEEEESSGGGCTTHHHHHHHHHHTTTSEEEEEEESSSCC-TTEEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEE
T ss_pred             CCcEEEEEEcCCHHHhhHHHHHHHHHHhCcCcEEEEEEEecCCC-CCCcceeeChHHHhhhHHHhhccCCCccCCEEEEe
Confidence            36899999999999999999999999887669999999998753 2234677777665421 222111 22257899999


Q ss_pred             CCcchHHHHHHHH-HHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          320 GLRGMEKGIDDIM-VSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       320 Gp~~m~~~v~~~L-~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      ||++|++++++.| .+.|...+        ++...+.|..|-|
T Consensus       213 Gp~~m~~~v~~~l~~~~G~~~~--------~i~~~~~~~~E~~  247 (248)
T 1fdr_A          213 GNPQMVRDTQQLLKETRQMTKH--------LRRRPGHMTAEHY  247 (248)
T ss_dssp             ECHHHHHHHHHHHHHHHCCCBC--------BTTBCCSEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHcCCChH--------HcCCCccEEEEec
Confidence            9999999999999 88888764        3344577777765

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=100.00  E-value=4.7e-38  Score=288.71  Aligned_cols=238  Identities=19%  Similarity=0.209  Sum_probs=190.3

Q ss_pred             CCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022           83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV  162 (361)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V  162 (361)
                      ....++|++++.++++     +++++|..+..+.|+||||+.|.++..+    ....|+|||+|.|.     ++.++|+|
T Consensus        18 ~~~~~~V~~~~~~~~~-----~~~~~l~~~~~~~~~pGQ~v~l~~~~~~----~~~~r~ySi~s~~~-----~~~~~~~v   83 (271)
T 4fk8_A           18 KFDTATVLSVHHWTDT-----LFSFTCTRDQALRFNNGEFTMVGLEVDG----KPLTRAYSIVSPNY-----EEHLEFFS   83 (271)
T ss_dssp             CEEEEEEEEEEEEETT-----EEEEEECCCTTCCCCTTCEEEEEEEETT----EEEEEEEECCSCTT-----SSSEEEEE
T ss_pred             cceeEEEEEEEEcCCC-----EEEEEEEcCCCCCcCCCCEEEEEccCCC----ceeeeeEeccCCCC-----CCcEEEEE
Confidence            4678999999999999     9999999988888999999999987432    23689999999884     56799999


Q ss_pred             EEeeEecCCCceecCccchhhhcCCCCCEEEEE-ccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccccccc
Q 043022          163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKIT-GPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKF  241 (361)
Q Consensus       163 ~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~-gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~  241 (361)
                      ++++         +|.+|++|+++++|+.|.+. ||+|.++..+....++++||||||||||+++|++++...+.     
T Consensus        84 ~~~~---------~G~~s~~l~~l~~Gd~v~v~~gP~G~~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~-----  149 (271)
T 4fk8_A           84 IKVQ---------NGPLTSRLQHLKVGDPVLIGKKPTGTLVADNLLPGKTLWMLSTGTGLAPFMSIIRDPDIYER-----  149 (271)
T ss_dssp             ECCT---------TCTTHHHHTTCCTTCEEEEESCCBCSCCGGGBCCCSEEEEEECGGGGHHHHHHTTCHHHHHH-----
T ss_pred             EEEC---------CCchhhHHhcCCCCCEEEEecCCCcceecCCcCCCCeEEEEECCEEHHHHHHHHHHHHhcCC-----
Confidence            9875         79999999999999999999 99998765432356899999999999999999998765432     


Q ss_pred             CCeEEEEEeccCCcccccHHHHHHHHHhCC-------CceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHH-----h
Q 043022          242 NGLAWLFLGVPTSSSLLYKEEFEKMKEKAP-------ENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL-----L  309 (361)
Q Consensus       242 ~~~i~L~~g~r~~~d~~~~~el~~l~~~~~-------~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~-----l  309 (361)
                      ..+++|+|++|+.+|++|.+||+++.++++       .+++++++++++..   +.++++++.+.+.  .+...     +
T Consensus       150 ~~~v~l~~~~r~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~s~~~~---~~~G~v~~~~~~~--~l~~~~~~~~~  224 (271)
T 4fk8_A          150 FDKVVLTHTCRLKGELAYMDYIKHDLPGHEYLGDVIREKLVYYPTVTREEF---ENEGRITDLIASG--KLFTDLDMPPF  224 (271)
T ss_dssp             CSEEEEEECCCSHHHHHHHHHHHTCCTTCTTHHHHHHHHEEEEECC----------CCHHHHHHHHS--HHHHHTTCCCC
T ss_pred             CCCEEEEEecCCHHHHhHHHHHHHHHHhCccccccccceEEEEEEecCCcc---ccccccChHHhcc--hhhhhcccccC
Confidence            368999999999999999999999877664       25888888887653   2556676665431  11121     1


Q ss_pred             ccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          310 KKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       310 ~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      ..++..+|+|||+.|++++++.|.+.|.+.+        ++...|+|+.|.|
T Consensus       225 ~~~~~~v~vCGp~~m~~~v~~~l~~~gv~~~--------~i~~~~~~~~E~y  268 (271)
T 4fk8_A          225 SPEQDRVMLCGSTAMLKDTTELLKKAGLVEG--------KNSAPGHYVIERA  268 (271)
T ss_dssp             CTTTEEEEEEECHHHHHHHHHHHHHTTCCBC--------BTTBCBSEEEEES
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHcCCchh--------hcCCCCcEEEEEe
Confidence            2258899999999999999999999998865        4555889999887

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=100.00  E-value=1.1e-36  Score=279.27  Aligned_cols=239  Identities=17%  Similarity=0.232  Sum_probs=184.4

Q ss_pred             cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCc
Q 043022           80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSK  156 (361)
Q Consensus        80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~  156 (361)
                      .|.....++|++++.++++     +++++|..+.   .+.|+||||+.|.++..+    ....|+|||+|.+.    +.+
T Consensus         8 ~~~~~~~~~v~~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~g----~~~~R~ySi~s~~~----~~~   74 (270)
T 2cnd_A            8 NPRGRIHCRLVAKKELSRD-----VRLFRFSLPSPDQVLGLPIGKHIFVCATIEG----KLCMRAYTPTSMVD----EIG   74 (270)
T ss_dssp             ---CCEEEEEEEEEEEETT-----EEEEEEECSSTTCCCCCCTTCEEEEEEEETT----EEEEEEECCCSCTT----CCS
T ss_pred             CCCceEEEEEEEEEEeCCC-----eEEEEEECCCCccccCCCCCCEEEEEeeeCC----cEEEEeeccCCCcc----CCC
Confidence            4566889999999999999     9999999865   357999999999875322    34689999999986    568


Q ss_pred             EEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCC-------cCCCC--CCCCcEEEEecCCchhhHHHH
Q 043022          157 TVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKE-------MLMPR--DPNATVIMLATGTGIAPFRGF  227 (361)
Q Consensus       157 ~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~-------~~~~~--~~~~~iv~Ia~GtGiaP~~~~  227 (361)
                      .++|+|+.+.+........+|.+|+||+++++||.|.|.||+|.+       |.++.  ...+++|||||||||||+++|
T Consensus        75 ~~~l~vk~~~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~gP~G~~~~~~~g~f~l~~~~~~~~~~vliagGtGiaP~~~~  154 (270)
T 2cnd_A           75 HFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQRNARRLAMICGGSGITPMYQI  154 (270)
T ss_dssp             EEEEEEECCCSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEECCSSSCEEETTEEECCSEEEEEEEGGGHHHHHHH
T ss_pred             EEEEEEEEeccCcccccCCCCchhhHHhcCCCCCEEEEECCcccceeccccceeccCCcccCCEEEEEeccccHHHHHHH
Confidence            999999985210000001258999999989999999999999973       44442  245799999999999999999


Q ss_pred             HHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecC---CcccCCCCeeEecchHHHhHHH
Q 043022          228 LWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR---EQKNEKGEKMYIQTRMAEYANE  304 (361)
Q Consensus       228 l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~---~~~~~~g~~~~v~~~l~~~~~~  304 (361)
                      ++++......   ...+++|+|++|+.+|++|.+||++|.+++++++++++++++   ++++|.+.++++++.+.+.   
T Consensus       155 l~~l~~~~~~---~~~~v~l~~~~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~v~~~~l~~---  228 (270)
T 2cnd_A          155 IQAVLRDQPE---DHTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLRE---  228 (270)
T ss_dssp             HHHHHHTTTT---CCCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGGGCCCSEESSCCHHHHHH---
T ss_pred             HHHHHhcCCC---CCcEEEEEEEcCCHHHcchHHHHHHHHHHCcCcEEEEEEECCCCCCCCCcccccccCCHHHHHH---
Confidence            9998764211   137899999999999999999999999888767999999987   4566777788888764321   


Q ss_pred             HHHHhccCCeEEEEECCcchHHH-HHHHHHHHHHc
Q 043022          305 LWELLKKDNTYVYMCGLRGMEKG-IDDIMVSLAAN  338 (361)
Q Consensus       305 ~~~~l~~~~~~vyvCGp~~m~~~-v~~~L~~~g~~  338 (361)
                      ...... .+..+|+|||++|+++ +++.|.++|..
T Consensus       229 ~l~~~~-~~~~vyvCGp~~m~~~~~~~~L~~~G~~  262 (270)
T 2cnd_A          229 HVPEGG-DDTLALACGPPPMIQFAISPNLEKMKYD  262 (270)
T ss_dssp             HSCCCS-SSEEEEEECCHHHHHTTTHHHHHTTTCC
T ss_pred             hcCCCc-CCEEEEEECCHHHHHHHHHHHHHHcCCC
Confidence            111111 3578999999999996 58888877654

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=100.00  E-value=7.1e-36  Score=269.71  Aligned_cols=220  Identities=17%  Similarity=0.283  Sum_probs=178.0

Q ss_pred             CeeEEEEeEeeecCCCCCCceEEEEeeCCC---ccccCCCcEEEEecCCCCCCCCCC-CceecccccCCCCCCCCCcEEE
Q 043022           84 PYIGRCLLNTKITGDDAPGETWHMVFSTEG---EVPYKEGQSIGVIADGVDKNAKPH-KLRLYSIASSALGDFGDSKTVS  159 (361)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~---~l~~~pGQ~v~l~~~~~~~~~~~~-~~R~ySias~p~~~~~~~~~l~  159 (361)
                      ...++|++++.++++     +++|+|..+.   .+.|+||||+.|.++..+.   +. +.|+|||+|.|.     ++.++
T Consensus         3 ~~~~~V~~~~~~~~~-----~~~~~l~~~~~~~~~~~~pGq~v~l~~~~~~~---~~~~~R~ySi~s~~~-----~~~~~   69 (243)
T 4eh1_A            3 GRTFVVREKQVESAY-----VTSFVLVPADGGAVLDYQPGQYIGIEVTPEGS---DYREIRQYSLSHASN-----GREYR   69 (243)
T ss_dssp             CEEEEEEEEEECSSS-----EEEEEEEESSCSCCCCCCTTCEEEEEECCSSC---SSCEEEEEEBCSCCC-----SSCEE
T ss_pred             cEEEEEEEEEEcCCC-----eEEEEEEeCCCCcCCCcCCCCEEEEEEecCCC---ccccceeeEeccCCC-----CCeEE
Confidence            456899999999999     9999999875   3569999999999875321   22 579999999984     57899


Q ss_pred             EEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccc
Q 043022          160 LCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED  238 (361)
Q Consensus       160 ~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~  238 (361)
                      |+|+++.    .+...+|.+|+||++ +++|++|.|.||+|.+++.  ...+++|||||||||||+++|++++...+.  
T Consensus        70 i~vk~~~----~~~~~~G~~S~~l~~~l~~G~~v~v~gP~G~~~~~--~~~~~~vliagGtGitp~~~~l~~l~~~~~--  141 (243)
T 4eh1_A           70 ISVKREG----VGSDNPGLVSHYLHNNVKVGDSVKLYAPAGDFFYV--ERERPVVLISAGVGATPMQAILHTLAKQNK--  141 (243)
T ss_dssp             EEEECTT----TTSSSCCHHHHHHHHHCCTTCEEEEEEEECSCCCC--CCSSCEEEEEEGGGHHHHHHHHHHHHHTTC--
T ss_pred             EEEEEee----cCCCCCCeehhHHHhcCCCCCEEEEEccCcccCcC--CCCCCEEEEEccccHHHHHHHHHHHHHcCC--
Confidence            9999861    001126999999985 9999999999999986543  566899999999999999999999886542  


Q ss_pred             cccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEE
Q 043022          239 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYM  318 (361)
Q Consensus       239 ~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyv  318 (361)
                         .. ++|+|++|+.+|++|.+||++|.+++  +++++++++++.+.+. ..++++..+.        .+..++..||+
T Consensus       142 ---~~-v~l~~~~r~~~~~~~~~el~~l~~~~--~~~~~~~~s~~~~~~~-~~g~~~~~~~--------~~~~~~~~vyv  206 (243)
T 4eh1_A          142 ---SG-VTYLYACNSAKEHTFAQETAQLIAQQ--GWMQQVWYRDESADDV-LQGEMQLAEL--------ILPIEDGDFYL  206 (243)
T ss_dssp             ---CS-EEEEEEESSGGGCTTHHHHHHHHHHH--TCEEEEEESSCCCTTC-EESSCCCTTS--------CCCTTTCEEEE
T ss_pred             ---Ce-EEEEEEeCChhhhhHHHHHHHHHHhC--CeEEEEEEccCCCccc-ccCCccHHHe--------eccCCCcEEEE
Confidence               13 99999999999999999999998876  8899999988755443 4555554433        12225789999


Q ss_pred             ECCcchHHHHHHHHHHHHHcc
Q 043022          319 CGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       319 CGp~~m~~~v~~~L~~~g~~~  339 (361)
                      |||+.|++++++.|.+.|...
T Consensus       207 CGp~~m~~~v~~~l~~~g~~~  227 (243)
T 4eh1_A          207 CGPIGFMQYVVKQLLALGVDK  227 (243)
T ss_dssp             EECHHHHHHHHHHHHHHTCCG
T ss_pred             ECCHHHHHHHHHHHHHcCCCH
Confidence            999999999999999988764

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=100.00  E-value=3.2e-36  Score=276.76  Aligned_cols=229  Identities=18%  Similarity=0.242  Sum_probs=182.6

Q ss_pred             CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEE
Q 043022           82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLC  161 (361)
Q Consensus        82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~  161 (361)
                      ..+..++|++++.++++     +++|+|..+..+.|.||||+.|.++..+  + ....|+|||+|.|.     ++.++|+
T Consensus        14 ~~~~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~pGQ~v~l~~~~~~--g-~~~~R~ySi~s~~~-----~~~~~l~   80 (272)
T 2bgi_A           14 VLPDAQTVTSVRHWTDT-----LFSFRVTRPQTLRFRSGEFVMIGLLDDN--G-KPIMRAYSIASPAW-----DEELEFY   80 (272)
T ss_dssp             --CEEEEEEEEEEEETT-----EEEEEEECCTTCCCCTTCEEEEEEECTT--S-CEEEEEEECCSCTT-----CSEEEEE
T ss_pred             EEeEEEEEEEEEEcCCC-----EEEEEEeCCCCCccCCCCEEEEEeccCC--C-CeeeeeeeeccCCC-----CCeEEEE
Confidence            34578999999999998     9999999988788999999999987421  1 33689999999984     4799999


Q ss_pred             EEEeeEecCCCceecCccchhhhcCCCCCEEEEE-ccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccc
Q 043022          162 VKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKIT-GPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYK  240 (361)
Q Consensus       162 V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~-gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~  240 (361)
                      |++++         +|.+|+||+++++||.|.|. ||+|.+.+.+....++++||||||||||+++|++++...+.    
T Consensus        81 v~~~~---------~G~~s~~l~~l~~Gd~v~v~~gP~G~f~~~~~~~~~~~vliagG~GiaP~~~~l~~l~~~~~----  147 (272)
T 2bgi_A           81 SIKVP---------DGPLTSRLQHIKVGEQIILRPKPVGTLVIDALLPGKRLWFLATGTGIAPFASLMREPEAYEK----  147 (272)
T ss_dssp             EECCT---------TCTTHHHHTTCCTTCEEEEEEEEECSCCGGGBCCCSEEEEEEEGGGGHHHHHHTTCGGGGTS----
T ss_pred             EEEcc---------CCCchhHHHhCCCCCEEEEeeCCCCcccccccccCCeEEEEeecccHHHHHHHHHHHHhcCC----
Confidence            99875         79999999999999999999 99998544322235899999999999999999998765321    


Q ss_pred             cCCeEEEEEeccCCcccccHHHHH-HHHH-----hC-CCceEEEEEecCCcccCCCCeeEecchHHHhH-HHHHHH--hc
Q 043022          241 FNGLAWLFLGVPTSSSLLYKEEFE-KMKE-----KA-PENFRLDFAVSREQKNEKGEKMYIQTRMAEYA-NELWEL--LK  310 (361)
Q Consensus       241 ~~~~i~L~~g~r~~~d~~~~~el~-~l~~-----~~-~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~-~~~~~~--l~  310 (361)
                       ..+++|+|++|+.+|++|.+||+ +|.+     ++ +.++++++++|++..   +.++++++.+.+.. ++....  +.
T Consensus       148 -~~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~~---~~~g~v~~~l~~~~l~~~~~~~~~~  223 (272)
T 2bgi_A          148 -FDEVIMMHACRTVAELEYGRQLVEALQEDPLIGELVEGKLKYYPTTTREEF---HHMGRITDNLASGKVFEDLGIAPMN  223 (272)
T ss_dssp             -CSEEEEEEEESSSGGGHHHHHHHHHHHHCTTTTTTSTTTEEEEEEESSSCC---SSBCCHHHHHHSCHHHHHHTCCCCC
T ss_pred             -CCcEEEEEEeCCHHHhhHHHHHHHHHHhcchhhcccCCcEEEEEEecCCcc---ccCceechHHHhhhHhhhcccccCC
Confidence             36899999999999999999999 9987     54 339999999998732   35677877665421 111111  12


Q ss_pred             cCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022          311 KDNTYVYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       311 ~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                      .++..+|+|||++|++++++.|.+.|....
T Consensus       224 ~~~~~vyvCGp~~m~~~v~~~l~~~G~~~~  253 (272)
T 2bgi_A          224 PETDRAMVCGSLAFNVDVMKVLESYGLREG  253 (272)
T ss_dssp             TTTEEEEEEECHHHHHHHHHHHHTTTCCBC
T ss_pred             CCCcEEEEECCHHHHHHHHHHHHHcCCChH
Confidence            257899999999999999999998887653

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=100.00  E-value=8.8e-36  Score=271.49  Aligned_cols=225  Identities=21%  Similarity=0.225  Sum_probs=180.4

Q ss_pred             CeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022           84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK  163 (361)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~  163 (361)
                      ...++|++++.++++     +++|+|..+..+.|.||||+.|.++..+    +...|+|||+|.|.     ++.++|+|+
T Consensus         3 ~~~~~V~~~~~~~~~-----~~~l~l~~~~~~~~~pGq~v~l~~~~~g----~~~~R~ySi~s~~~-----~~~~~~~i~   68 (257)
T 2qdx_A            3 LYTERVLSVHHWNDT-----LFSFKTTRNPGLRFKTGQFVMIGLEVDG----RPLMRAYSIASPNY-----EEHLEFFSI   68 (257)
T ss_dssp             SEEEEEEEEEEEETT-----EEEEEEECCTTCCCCTTCEEEEEEEETT----EEEEEEEECCSCTT-----SSEEEEEEE
T ss_pred             eEEEEEEEEEEcCCC-----eEEEEEeCCCCCccCCCCEEEEEecCCC----CceeeeeEeecCCC-----CCeEEEEEE
Confidence            567999999999998     9999999988788999999999987422    34689999999984     479999999


Q ss_pred             EeeEecCCCceecCccchhhhcCCCCCEEEEE-ccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccC
Q 043022          164 RLVYTNENGEIVKGVCSNFLCDLKPGAEVKIT-GPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN  242 (361)
Q Consensus       164 ~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~-gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~  242 (361)
                      .++         +|.+|++|+++++||+|.|. ||+|.+........+++|||||||||||+++|++++...+.     .
T Consensus        69 ~~~---------~G~~s~~l~~l~~Gd~v~v~~gp~G~f~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~~-----~  134 (257)
T 2qdx_A           69 KVP---------DGPLTSRLQHLKEGDELMVSRKPTGTLVHDDLLPGKHLYLLSTGTGMAPFLSVIQDPETYER-----Y  134 (257)
T ss_dssp             CCT---------TCTTHHHHTTCCTTCEEEECSCCBCSCCGGGBCSCSEEEEEEEGGGGHHHHHHTTCHHHHHH-----C
T ss_pred             EeC---------CCcchhHHHhCCCCCEEEEecCCCCCccCCcccCCCeEEEEEeceEHHHHHHHHHHHHhcCC-----C
Confidence            875         79999999999999999999 99998543322235799999999999999999988765431     2


Q ss_pred             CeEEEEEeccCCcccccHHHHH-HHHH-----hC-CCceEEEEEecCCcccCCCCeeEecchHHHhH-HHHHHH--hccC
Q 043022          243 GLAWLFLGVPTSSSLLYKEEFE-KMKE-----KA-PENFRLDFAVSREQKNEKGEKMYIQTRMAEYA-NELWEL--LKKD  312 (361)
Q Consensus       243 ~~i~L~~g~r~~~d~~~~~el~-~l~~-----~~-~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~-~~~~~~--l~~~  312 (361)
                      .+++|+|++|+.+|++|.+||+ ++.+     ++ +.++++++++|++..   +.++++++.+.+.. ++....  +...
T Consensus       135 ~~v~l~~~~r~~~~~~~~~el~~~l~~~~~~~~~~~~~~~~~~~~s~~~~---~~~g~v~~~l~~~~l~~~~~~~~~~~~  211 (257)
T 2qdx_A          135 EKVILVHGVRWVSELAYADFITKVLPEHEYFGDQVKEKLIYYPLVTREPF---RNQGRQTDLMRSGKLFEDIGLPPMNPQ  211 (257)
T ss_dssp             SEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEESSSCC---SSBSCHHHHHHHSHHHHHHTCCCCCTT
T ss_pred             CeEEEEEEcCCHHHhHhHHHHHHHHHhchhhhccCCCcEEEEEEecCCCc---ccCceechhhhhhhHHHhcccccCCcC
Confidence            6899999999999999999999 8865     32 128999999998732   25667777665421 111111  1225


Q ss_pred             CeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022          313 NTYVYMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       313 ~~~vyvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                      +..+|+|||++|++++++.|.+.|...
T Consensus       212 ~~~vyvCGp~~m~~~v~~~l~~~G~~~  238 (257)
T 2qdx_A          212 DDRAMICGSPSMLEETSAVLDSFGLKI  238 (257)
T ss_dssp             TEEEEEEECHHHHHHHHHHHHHTTCCB
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCh
Confidence            789999999999999999999988764

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=100.00  E-value=1.2e-34  Score=280.14  Aligned_cols=222  Identities=18%  Similarity=0.246  Sum_probs=179.4

Q ss_pred             CCeeEEEEeEeeecCCCCCCceEEEEeeCCC--c-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEE
Q 043022           83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEG--E-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVS  159 (361)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~  159 (361)
                      ....++|++++.++++     +++|+|..+.  . ..|+||||+.|.++..+.  ...+.|+|||+|.|.     ++.++
T Consensus       151 ~~~~~~V~~~~~~s~~-----i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~~--~~~~~R~YSi~s~p~-----~~~~~  218 (396)
T 1gvh_A          151 GTRDFRIVAKTPRSAL-----ITSFELEPVDGGAVAEYRPGQYLGVWLKPEGF--PHQEIRQYSLTRKPD-----GKGYR  218 (396)
T ss_dssp             SEEEEEEEEEEECSSS-----EEEEEEEETTCCCCCCCCTTCEEEEEECCTTC--SSCEEEEEECCSCCC-----SSCEE
T ss_pred             CcEEEEEEEEEEcCCC-----eEEEEEEeCCCCcCCCCCCCCeEEEEecCCCC--ccceeecceeccCCC-----CCeEE
Confidence            3568999999999999     9999999864  2 479999999999873210  124689999999984     57899


Q ss_pred             EEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccc
Q 043022          160 LCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED  238 (361)
Q Consensus       160 ~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~  238 (361)
                      |+||+++         +|.+|+||++ +++||.|.|.||+|.| .++.+..+++|||||||||||+++|++++...+.  
T Consensus       219 i~Vk~~~---------~G~~S~~L~~~l~~Gd~v~v~gP~G~f-~l~~~~~~~~vlIagGtGitP~~s~l~~l~~~~~--  286 (396)
T 1gvh_A          219 IAVKREE---------GGQVSNWLHNHANVGDVVKLVAPAGDF-FMAVADDTPVTLISAGVGQTPMLAMLDTLAKAGH--  286 (396)
T ss_dssp             EEEECCT---------TCHHHHHHHHTCCTTCEEEEEEEECSC-CCCCCTTCCEEEEEEGGGGHHHHHHHHHHHHHTC--
T ss_pred             EEEEEcC---------CCcchHHHHhcCCCCCEEEEEcCCcce-ECCCCCCCCEEEEecchhHhHHHHHHHHHHhcCC--
Confidence            9999875         6999999997 9999999999999964 4543456899999999999999999999876532  


Q ss_pred             cccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccC-----CCCeeEecch-HHHhHHHHHHHhccC
Q 043022          239 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNE-----KGEKMYIQTR-MAEYANELWELLKKD  312 (361)
Q Consensus       239 ~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~-----~g~~~~v~~~-l~~~~~~~~~~l~~~  312 (361)
                         .++++|+|++|+.++++|.++|+++.++++ +++++++++++...|     .+..+++... +.+..     .+  .
T Consensus       287 ---~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~G~~~~~~l~~~~-----~~--~  355 (396)
T 1gvh_A          287 ---TAQVNWFHAAENGDVHAFADEVKELGQSLP-RFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAF-----SD--P  355 (396)
T ss_dssp             ---CSCEEEEEEESCTTTCCSHHHHHHHHHTSS-SEEEEEEESSCCHHHHHHTCCSEESSCCGGGSSSCC-----CC--T
T ss_pred             ---CCcEEEEEEeCCHHHhhhHHHHHHHHHHCC-CeEEEEEECCCCccccccCccCccCcCCHHHHhhcc-----CC--C
Confidence               368999999999999999999999998888 899999999875432     2234445432 21100     11  3


Q ss_pred             CeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022          313 NTYVYMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       313 ~~~vyvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                      +..+|+|||++|++++++.|.+.|.+.
T Consensus       356 ~~~vyvCGp~~m~~~v~~~L~~~Gv~~  382 (396)
T 1gvh_A          356 TMQFYLCGPVGFMQFTAKQLVDLGVKQ  382 (396)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred             CCEEEEeCCHHHHHHHHHHHHHcCCCH
Confidence            689999999999999999999988764

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=100.00  E-value=6.1e-35  Score=266.78  Aligned_cols=209  Identities=18%  Similarity=0.220  Sum_probs=170.8

Q ss_pred             eeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022           85 YIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK  163 (361)
Q Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~  163 (361)
                      +.++|++++.++++     +++|+|+.+. ...|+||||+.|.++..+    +...|+|||+|.|.    +.+.++|+|+
T Consensus         6 ~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~pGQ~v~l~~~~~~----~~~~R~ySi~s~~~----~~~~l~~~vk   72 (262)
T 1ep3_B            6 EMMTVVSQREVAYN-----IFEMVLKGTLVDEMDLPGQFLHLAVPNGA----MLLRRPISISSWDK----RAKTCTILYR   72 (262)
T ss_dssp             EEEEEEEEEEEETT-----EEEEEEESGGGGGCCSTTCEEEECCSCTT----CCSCEEEECCEEET----TTTEEEEEEE
T ss_pred             cceEEEEEEEecCC-----EEEEEEEcCcccccCCCCceEEEEcCCCC----ceeeEEEEeeeecC----CCCEEEEEEE
Confidence            46899999999999     9999999887 457999999999987532    34799999999986    5789999999


Q ss_pred             EeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCC-CCCcEEEEecCCchhhHHHHHHHHHhhcccccccC
Q 043022          164 RLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRD-PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFN  242 (361)
Q Consensus       164 ~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~-~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~  242 (361)
                      +++         .|.+|+||+++++||+|.|.||+|+.|.++.+ ..++++||||||||||+++|++++...+       
T Consensus        73 ~~~---------~G~~S~~l~~l~~Gd~v~v~gP~G~~f~l~~~~~~~~~lliagGtGitP~~s~l~~l~~~~-------  136 (262)
T 1ep3_B           73 IGD---------ETTGTYKLSKLESGAKVDVMGPLGNGFPVAEVTSTDKILIIGGGIGVPPLYELAKQLEKTG-------  136 (262)
T ss_dssp             CCC---------TTSHHHHHHTCCTTCEEEEEEEESBCCCCTTCCTTSEEEEEEEGGGSHHHHHHHHHHHHHT-------
T ss_pred             Eec---------CCchHHHHhcCCCCCEEEEEcccCCCccCCCccCCCeEEEEECcCcHHHHHHHHHHHHHcC-------
Confidence            976         79999999999999999999999985666543 3689999999999999999999987642       


Q ss_pred             CeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc
Q 043022          243 GLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR  322 (361)
Q Consensus       243 ~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~  322 (361)
                      .+++|+|++|+.+|++|.+||++|..    . +++++ ++  +.|.+.++++++.+.+.       +. ++..+|+|||+
T Consensus       137 ~~v~l~~~~r~~~~~~~~~el~~l~~----~-~~~~~-~~--~~~~~~~g~v~~~l~~~-------~~-~~~~vyvCGp~  200 (262)
T 1ep3_B          137 CQMTILLGFASENVKILENEFSNLKN----V-TLKIA-TD--DGSYGTKGHVGMLMNEI-------DF-EVDALYTCGAP  200 (262)
T ss_dssp             CEEEEEEEESSGGGCCCHHHHHTSTT----E-EEEEE-ET--TCSSSEESCHHHHHHHC-------CS-CCSEEEEESCH
T ss_pred             CeEEEEEEcCCHHHhhhHHHHhhhcc----C-cEEEE-EC--CCCCcceeehHHHHHhh-------cc-CCCEEEEECCH
Confidence            68999999999999999999988643    2 34433 32  23555677777755432       22 46799999999


Q ss_pred             chHHHHHHHHHHHHHcc
Q 043022          323 GMEKGIDDIMVSLAAND  339 (361)
Q Consensus       323 ~m~~~v~~~L~~~g~~~  339 (361)
                      .|++++++ |.+.|.+.
T Consensus       201 ~m~~~v~~-l~~~gv~~  216 (262)
T 1ep3_B          201 AMLKAVAK-KYDQLERL  216 (262)
T ss_dssp             HHHHHHHH-HTTTCSSE
T ss_pred             HHHHHHHH-HHhCCCCE
Confidence            99999999 98776653

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=100.00  E-value=8.1e-34  Score=274.91  Aligned_cols=226  Identities=17%  Similarity=0.234  Sum_probs=179.3

Q ss_pred             CCeeEEEEeEeeecCCCCCCceEEEEeeCCC--c-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEE
Q 043022           83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEG--E-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVS  159 (361)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~  159 (361)
                      ....++|++++.++++     +++|+|..+.  . ..|+||||+.|.++..+  ....+.|+|||+|.|.     ++.++
T Consensus       153 ~~~~~~V~~~~~~s~~-----i~~~~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~~~~~~R~YSi~s~p~-----~~~~~  220 (403)
T 1cqx_A          153 GWRTFVIREKRPESDV-----ITSFILEPADGGPVVNFEPGQYTSVAIDVPA--LGLQQIRQYSLSDMPN-----GRTYR  220 (403)
T ss_dssp             SCEEEEEEEEEECSSS-----EEEEEEEETTCCCCCCCCTTCEEEEEEEETT--TTEEEEEEEECCSCCC-----SSCEE
T ss_pred             cceeEEEEEEEEcCCC-----eEEEEEEeCCCCcCCCCCCCCEEEEEEecCC--CCcceeecceecCCCC-----CCeEE
Confidence            3678999999999999     9999999764  3 47999999999986311  0123689999999983     57899


Q ss_pred             EEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccc
Q 043022          160 LCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED  238 (361)
Q Consensus       160 ~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~  238 (361)
                      |+||+++    ....++|.+|+||++ +++||.|.|.||+|.+ .++.+..+++|||||||||||+++|++++.. +.  
T Consensus       221 i~Vk~~~----~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f-~l~~~~~~~~vlIagGtGitP~~s~l~~l~~-~~--  292 (403)
T 1cqx_A          221 ISVKREG----GGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSF-HIDVDAKTPIVLISGGVGLTPMVSMLKVALQ-AP--  292 (403)
T ss_dssp             EEEECCC----BTTBCCCHHHHHHHHHCCTTCEEEECCCBCSC-SCCTTCCSCEEEEESSCCHHHHHHHHHHHTC-SS--
T ss_pred             EEEEECC----CCCCCCCeehHHHhhCCCCCCEEEEecCccCc-ccCCCCCCCEEEEEecccHhhHHHHHHHHHh-CC--
Confidence            9999863    011225999999996 9999999999999964 4543456899999999999999999999875 21  


Q ss_pred             cccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCC-----CCeeEecch-HHHhHHHHHHHhccC
Q 043022          239 YKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEK-----GEKMYIQTR-MAEYANELWELLKKD  312 (361)
Q Consensus       239 ~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~-----g~~~~v~~~-l~~~~~~~~~~l~~~  312 (361)
                         .++++|+|++|+.++++|.++|+++.++++ +++++++++++...|.     +..+++... +.+    +. .+  .
T Consensus       293 ---~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~G~i~~~~l~~----~~-~~--~  361 (403)
T 1cqx_A          293 ---PRQVVFVHGARNSAVHAMRDRLREAAKTYE-NLDLFVFYDQPLPEDVQGRDYDYPGLVDVKQIEK----SI-LL--P  361 (403)
T ss_dssp             ---CCCEEEEEEESCSSSCHHHHHHHHHHHHCT-TEEEEEEESSCCTTCCBTTTBSEESSCCGGGSHH----HH-CC--T
T ss_pred             ---CCcEEEEEEeCChhhCcHHHHHHHHHHhCC-CcEEEEEECCCCcccccccccCcCCCcCHHHHhh----cc-CC--C
Confidence               378999999999999999999999999888 8999999998765442     234455432 221    11 12  3


Q ss_pred             CeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022          313 NTYVYMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       313 ~~~vyvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                      +..+|+|||++|++++++.|.+.|.+.
T Consensus       362 ~~~vyvCGp~~m~~~v~~~L~~~Gv~~  388 (403)
T 1cqx_A          362 DADYYICGPIPFMRMQHDALKNLGIHE  388 (403)
T ss_dssp             TCEEEEESSHHHHHHHHHHHHHTTCCG
T ss_pred             CCEEEEeCCHHHHHHHHHHHHHcCCCH
Confidence            789999999999999999999988764

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=100.00  E-value=1.5e-33  Score=272.69  Aligned_cols=223  Identities=18%  Similarity=0.258  Sum_probs=177.1

Q ss_pred             CCeeEEEEeEeeecCCCCCCceEEEEeeCCC--cc-----ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCC
Q 043022           83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EV-----PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDS  155 (361)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l-----~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~  155 (361)
                      ....++|++++.++++     +++|+|..+.  .+     .|+||||+.|.++....+....+.|+|||+|.|.     +
T Consensus       148 ~~~~~~V~~~~~~s~~-----i~~~~l~~~~~~~~~l~~~~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~-----~  217 (399)
T 4g1v_A          148 GWKPFEITAKEYVASD-----IVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSAST-----K  217 (399)
T ss_dssp             SCEEEEEEEEEEEETT-----EEEEEEEECTTSCCCGGGCCCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC-----T
T ss_pred             cceEEEEEEEEEcCCC-----eEEEEEEcCCCCcCCcCCCCCCCCCEEEEEEeCCCCCCccceeeeecccCCCC-----C
Confidence            3667899999999999     9999999864  34     7999999999964220001134689999999984     5


Q ss_pred             cEEEEEEEEeeEecCCCceecCccchhhh-cCCCCCEEEEEccCCCCcCCCCC----CCCcEEEEecCCchhhHHHHHHH
Q 043022          156 KTVSLCVKRLVYTNENGEIVKGVCSNFLC-DLKPGAEVKITGPVGKEMLMPRD----PNATVIMLATGTGIAPFRGFLWK  230 (361)
Q Consensus       156 ~~l~~~V~~~~~~~~~~~~~~G~~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~----~~~~iv~Ia~GtGiaP~~~~l~~  230 (361)
                      +.++|+||++..   .+....|.+|+||+ .+++||.|.|.||+|.+ .++.+    ..+++|||||||||||+++|+++
T Consensus       218 ~~~~i~Vk~~~~---~~~~~~G~~S~~L~~~l~~Gd~v~v~gP~G~f-~l~~~~~~~~~~~~vlIagG~GitP~~s~l~~  293 (399)
T 4g1v_A          218 NGLRFAVKMEAA---RENFPAGLVSEYLHKDAKVGDEIKLSAPAGDF-AINKELIHQNEVPLVLLSSGVGVTPLLAMLEE  293 (399)
T ss_dssp             TCEEEEEECCCC---BTTBCCCHHHHHHHHTCCTTCEEEEEEEECSC-CCCTTTTTCSSSCEEEEEEGGGHHHHHHHHHH
T ss_pred             CeEEEEEEeccC---CCCCCCCEehhHHHhCCCCCCEEEEEecccce-eeCcccccCCCCCEEEEecceeHhHHHHHHHH
Confidence            789999998420   00112799999998 69999999999999984 44434    46899999999999999999999


Q ss_pred             HHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhc
Q 043022          231 MFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLK  310 (361)
Q Consensus       231 ~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~  310 (361)
                      +...+.     .++++|+|++|+.++++|.++|+++.++++ +++++++++++.       +++...      .+.+.+.
T Consensus       294 l~~~~~-----~~~v~l~~~~r~~~~~~~~~el~~l~~~~~-~~~~~~~~s~~~-------g~~~~~------~l~~~~~  354 (399)
T 4g1v_A          294 QVKCNP-----NRPIYWIQSSYDEKTQAFKKHVDELLAECA-NVDKIIVHTDTE-------PLINAA------FLKEKSP  354 (399)
T ss_dssp             HHHHCT-----TSCEEEEEEESSSTTSTTHHHHHHHHTTCS-SEEEEEEETTTS-------CCCCHH------HHHHHSC
T ss_pred             HHHcCC-----CCCEEEEEecCCHHHhhhHHHHHHHHHhCC-CcEEEEEEeCCC-------CcccHH------HHHhhCC
Confidence            887542     368999999999999999999999998888 899999998753       233321      1222343


Q ss_pred             cCCeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022          311 KDNTYVYMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       311 ~~~~~vyvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                       ++..+|+|||++|++++++.|.+.|.+.
T Consensus       355 -~~~~vyvCGp~~m~~~v~~~L~~~Gv~~  382 (399)
T 4g1v_A          355 -AHADVYTCGSLAFMQAMIGHLKELEHRD  382 (399)
T ss_dssp             -SSCEEEEEECHHHHHHHHHHHHHTTCCG
T ss_pred             -CCCEEEEECCHHHHHHHHHHHHHcCCCH
Confidence             4789999999999999999999998774

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=100.00  E-value=7.3e-33  Score=260.27  Aligned_cols=205  Identities=17%  Similarity=0.248  Sum_probs=165.6

Q ss_pred             CCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc--c-ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcE
Q 043022           81 PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE--V-PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKT  157 (361)
Q Consensus        81 ~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~--l-~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~  157 (361)
                      |.....++|++++.++++     +++|+|..+..  + .|+||||+.|.+++.       ..|+|||+|.|.    +.+.
T Consensus         5 ~~~~~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~g-------~~R~ySi~s~~~----~~~~   68 (321)
T 2pia_A            5 EDGFLRLKIASKEKIARD-----IWSFELTDPQGAPLPPFEAGANLTVAVPNG-------SRRTYSLCNDSQ----ERNR   68 (321)
T ss_dssp             TTTCEEEEEEEEEEEETT-----EEEEEEECTTCCCCCCCCTTCEEEEECTTS-------CEEEEECCSCTT----CCSE
T ss_pred             CCCcEEEEEEEEEEcCCC-----EEEEEEEcCCCCcCCCCCCCCEEEEECCCC-------CcEEEEeCCCCC----CCCe
Confidence            455788999999999999     99999998763  4 699999999998631       689999999986    5689


Q ss_pred             EEEEEEEeeEecCCCceecCc-cchhhh-cCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhc
Q 043022          158 VSLCVKRLVYTNENGEIVKGV-CSNFLC-DLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEK  235 (361)
Q Consensus       158 l~~~V~~~~~~~~~~~~~~G~-~S~~L~-~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~  235 (361)
                      ++|+|++++         +|. +|+||+ ++++||.|.|.||+|.| .++. ..+++||||||||||||++|++++...+
T Consensus        69 l~i~Vk~~~---------~G~g~S~~L~~~l~~Gd~v~v~gP~g~f-~l~~-~~~~~vliagG~GItP~~s~l~~l~~~~  137 (321)
T 2pia_A           69 YVIAVKRDS---------NGRGGSISFIDDTSEGDAVEVSLPRNEF-PLDK-RAKSFILVAGGIGITPMLSMARQLRAEG  137 (321)
T ss_dssp             EEEEEECCT---------TSCSHHHHHHHSCCTTCEEEECCCBCCS-CCCT-TCSEEEEEEEGGGHHHHHHHHHHHHHHC
T ss_pred             EEEEEEEec---------CCcchhHHHHhcCCCCCEEEEeCCcccc-ccCC-CCCCEEEEEecccHhHHHHHHHHHHHcC
Confidence            999999876         687 999999 69999999999999975 4443 3679999999999999999999988653


Q ss_pred             ccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeE
Q 043022          236 HEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTY  315 (361)
Q Consensus       236 ~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~  315 (361)
                            ..+++|+|++|+.++++|.+||+++.  ++.++++++  +++..   +.+.++++.+.        ... .+..
T Consensus       138 ------~~~v~l~~~~r~~~~~~~~~el~~l~--~~~~~~~~~--~~~~~---~g~~~~~~ll~--------~~~-~~~~  195 (321)
T 2pia_A          138 ------LRSFRLYYLTRDPEGTAFFDELTSDE--WRSDVKIHH--DHGDP---TKAFDFWSVFE--------KSK-PAQH  195 (321)
T ss_dssp             ------SSEEEEEEEESCGGGCTTHHHHHSTT--TTTTEEEEE--CTTCT---TSCCCHHHHHS--------SCC-TTEE
T ss_pred             ------CCcEEEEEEECChhhhHHHHHHhcCc--cCCeEEEEE--CCCcc---cCccCHHHHhc--------ccC-CCCE
Confidence                  16899999999999999999999885  233777654  44321   12333332222        122 5789


Q ss_pred             EEEECCcchHHHHHHHHHH
Q 043022          316 VYMCGLRGMEKGIDDIMVS  334 (361)
Q Consensus       316 vyvCGp~~m~~~v~~~L~~  334 (361)
                      +|+|||++|++++++.|.+
T Consensus       196 vyvCGP~~m~~~v~~~l~~  214 (321)
T 2pia_A          196 VYCCGPQALMDTVRDMTGH  214 (321)
T ss_dssp             EEEESCHHHHHHHHHHTTT
T ss_pred             EEEECCHHHHHHHHHHHHh
Confidence            9999999999999999987

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=99.96  E-value=2.1e-28  Score=222.14  Aligned_cols=207  Identities=15%  Similarity=0.170  Sum_probs=153.9

Q ss_pred             CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc--c-ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEE
Q 043022           82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE--V-PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTV  158 (361)
Q Consensus        82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~--l-~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l  158 (361)
                      .....++|++++.++++     +++|+|..+..  + .|.|||||.|.++..+  + +...|+|||++.+     . +.+
T Consensus         6 ~~~~~~~V~~~~~~t~~-----~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~~--~-~~~~R~YSi~~~~-----~-~~~   71 (252)
T 2gpj_A            6 PAPRELEVIRSTYITPH-----MLRITLGGAGLAGFPADQESAYIKLLFPQAG--E-RPLMRTYTIRQQR-----D-DEI   71 (252)
T ss_dssp             CCCEEEEEEEEEEEETT-----EEEEEEESGGGTTCCSCCTTCEEEEEECCTT--S-CCEEEEEECCEEE-----T-TEE
T ss_pred             CCcEEEEEEEEEEcCCC-----EEEEEEEcCChhhcCCCCCCCeEEEEcccCC--C-CCCCCceeeeccC-----C-CEE
Confidence            34678999999999999     99999998753  3 4799999999987422  1 3368999999976     3 688


Q ss_pred             EEEEEEeeEecCCCceec-CccchhhhcCCCCCEEEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhccc
Q 043022          159 SLCVKRLVYTNENGEIVK-GVCSNFLCDLKPGAEVKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE  237 (361)
Q Consensus       159 ~~~V~~~~~~~~~~~~~~-G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~  237 (361)
                      +|.|+..+         . |.+|+||+++++||.|.|.||.|.| .++. ..++++|||||||||||++|++++..    
T Consensus        72 ~i~~~~~~---------~~G~~S~~l~~l~~Gd~l~v~gP~G~f-~l~~-~~~~~lliagGtGitPi~s~l~~l~~----  136 (252)
T 2gpj_A           72 DVDFVLHD---------TDGPASSWAKTAQVGELIQIGGPGLKK-LINF-EADWFLLAGDMTALPAISVNLAKLPN----  136 (252)
T ss_dssp             EEEEECCS---------SCCHHHHHHHHCCTTCEEEEEEEECCC-CCCS-SSSEEEEEEEGGGHHHHHHHHHHSCT----
T ss_pred             EEEEEEeC---------CCCcHHHHHhhCCCCCEEEEecCCCCC-cCCC-CCceEEEEcchhhHHHHHHHHHhCCC----
Confidence            88888754         4 8999999999999999999999965 4442 34789999999999999999998742    


Q ss_pred             ccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCCCCeeEecchHHHhHHHHHHH-hccCCeEE
Q 043022          238 DYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWEL-LKKDNTYV  316 (361)
Q Consensus       238 ~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~-l~~~~~~v  316 (361)
                          ..++++++++++.+|++..+       ..+ +++++.+.+++.. +.+  ..+.+.+.       .. +...+..+
T Consensus       137 ----~~~~~~~~~~~~~~d~~~l~-------~~~-~~~v~~~~~~~~~-~~g--~~~~~~l~-------~~~~~~~~~~v  194 (252)
T 2gpj_A          137 ----NAVGYAVIEVLSEADIQPLV-------HPE-HVELHWVINPEAD-PEG--RPLVERIA-------QLPWLAGEPAV  194 (252)
T ss_dssp             ----TCEEEEEEEESSGGGCCCCC-------CCT-EEEEEEEECSSCC-TTC--HHHHHHHT-------TSCCCSSCEEE
T ss_pred             ----CCcEEEEEEECCHHHhhccc-------CCC-CcEEEEEeCCCCC-ccc--HHHHHHHH-------hccCCCCCcEE
Confidence                14678888999987765321       223 7888776655421 101  11111111       11 11146789


Q ss_pred             EEECCcchHHHHHHHHH-HHHHcc
Q 043022          317 YMCGLRGMEKGIDDIMV-SLAAND  339 (361)
Q Consensus       317 yvCGp~~m~~~v~~~L~-~~g~~~  339 (361)
                      |+|||++|++++++.|. +.|...
T Consensus       195 y~CGP~~m~~av~~~l~~~~G~~~  218 (252)
T 2gpj_A          195 WIACEFNSMRALRRHFKQAHALPK  218 (252)
T ss_dssp             EEEEEHHHHHHHHHHHHHHCCCCG
T ss_pred             EEEcCHHHHHHHHHHHHHhcCCCH
Confidence            99999999999999998 677653

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}

Probab=99.90  E-value=3.7e-25  Score=186.38  Aligned_cols=141  Identities=18%  Similarity=0.200  Sum_probs=97.9

Q ss_pred             CCCCCE-EEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHH
Q 043022          186 LKPGAE-VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFE  264 (361)
Q Consensus       186 l~~G~~-v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~  264 (361)
                      +++||+ +.|.||+|++|.++  ..++++||||||||||+++|++++...+       .+++|+ |+|+.+|++|.+||+
T Consensus         1 L~~Gd~vl~v~gP~G~~f~~~--~~~~~llIaGG~GItPl~sm~~~l~~~~-------~~v~l~-g~r~~~d~~~~~el~   70 (158)
T 3lrx_A            1 MKEGDSLLNVAGPLGTPVPME--KFGKILAIGAYTGIVEVYPIAKAWQEIG-------NDVTTL-HVTFEPMVILKEELE   70 (158)
T ss_dssp             -----------CCCCCCBCCC--CCSEEEEEEETTHHHHHHHHHHHHHHHT-------CEEEEE-EECBGGGCCSHHHHH
T ss_pred             CcCCCEeeEEECCCCCCCccC--CCCeEEEEEccCcHHHHHHHHHHHHhcC-------CcEEEE-EeCCHHHhhHHHHHH
Confidence            578999 59999999988764  4689999999999999999999987543       579999 999999999999999


Q ss_pred             HHHHhCCCceEEEEEecCC----cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022          265 KMKEKAPENFRLDFAVSRE----QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       265 ~l~~~~~~~~~~~~~~s~~----~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                      +|..    ++.+.++++.+    +++|.+.++++++.+.+..    ...  +...||+|||+.|++++.+.|.+.|.+..
T Consensus        71 ~l~~----~~~~~~v~~~~~~~~~~~~~g~~G~v~~~l~~~l----~~~--~~~~vy~CGP~~mm~~v~~~l~~~Gv~~~  140 (158)
T 3lrx_A           71 KAVT----RHIVEPVPLNPNQDFLANMKNVSQRLKEKVRELL----ESE--DWDLVFMVGPVGDQKQVFEVVKEYGVPMK  140 (158)
T ss_dssp             HHSS----EEEECCBCCCTTSCHHHHHHHHHHHHHHHHHHHH----HHS--CCSEEEEESCHHHHHHHHHHHGGGTCCEE
T ss_pred             HHHh----ceEEEEeeccccccCCCCCCCCcccccHHHHHhh----ccC--CCCEEEEECCHHHHHHHHHHHHHcCCCEE
Confidence            8853    44444333332    2345556677776554432    222  35689999999999999999999988755


Q ss_pred             CCHHHH
Q 043022          341 IDWLDY  346 (361)
Q Consensus       341 ~~~~~~  346 (361)
                      ...|++
T Consensus       141 vslE~~  146 (158)
T 3lrx_A          141 VDLHPI  146 (158)
T ss_dssp             ECC---
T ss_pred             EEeeHH
Confidence            555543

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=99.87  E-value=3.8e-23  Score=170.89  Aligned_cols=128  Identities=18%  Similarity=0.181  Sum_probs=96.1

Q ss_pred             EEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCC
Q 043022          192 VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP  271 (361)
Q Consensus       192 v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~  271 (361)
                      +.|.||+|++|..+  ..++++|||||+||||+++|++++...+       .++.|+ |+|+.+|++|.+||++|..   
T Consensus         3 ~~v~GP~G~~~~~~--~~~~~llIaGG~GiaPl~sm~~~l~~~~-------~~v~l~-g~R~~~~~~~~~el~~l~~---   69 (142)
T 3lyu_A            3 LNVAGPLGTPVPME--KFGKILAIGAYTGIVEVYPIAKAWQEIG-------NDVTTL-HVTFEPMVILKEELEKAVT---   69 (142)
T ss_dssp             ----CCCSCCBCCC--CCSEEEEEEETTHHHHHHHHHHHHHHTT-------CEEEEE-EEEEGGGCCSHHHHHTTSS---
T ss_pred             eeeeCCCCCCccCC--CCCeEEEEECcCcHHHHHHHHHHHHhcC-------CcEEEE-EeCCHHHhhHHHHHHHHHh---
Confidence            46899999988775  3589999999999999999999987543       579999 9999999999999998753   


Q ss_pred             CceEEEEEecCC----cccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022          272 ENFRLDFAVSRE----QKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       272 ~~~~~~~~~s~~----~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                       ++.+.++++++    +++|.|.+++|.+.+.+..    ...  +...||+|||+.|++++.+.+++.|.+-
T Consensus        70 -~~~~~~~~~~~~~~~~d~~~g~~G~v~~~l~~~~----~~~--~~~~vy~CGP~~Mm~av~~~l~~~~~~~  134 (142)
T 3lyu_A           70 -RHIVEPVPLNPNQDFLANMKNVSQRLKEKVRELL----ESE--DWDLVFMVGPVGDQKQVFEVVKEYGVPM  134 (142)
T ss_dssp             -EEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHH----HSS--CCSEEEEESCHHHHHHHHHHHHHHTCCB
T ss_pred             -heEEEEeecccccCCCCCCCCCccchhHHHHHhc----ccC--CCCEEEEECCHHHHHHHHHHHHHcCCch
Confidence             45555444442    3345556677766554422    211  3568999999999999999999988763

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}

Probab=99.84  E-value=2.3e-21  Score=167.01  Aligned_cols=146  Identities=10%  Similarity=0.209  Sum_probs=99.8

Q ss_pred             EEEEccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccc--cccCCeEEEEEeccCCcccc-cHHHHHHHHH
Q 043022          192 VKITGPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHED--YKFNGLAWLFLGVPTSSSLL-YKEEFEKMKE  268 (361)
Q Consensus       192 v~i~gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~--~~~~~~i~L~~g~r~~~d~~-~~~el~~l~~  268 (361)
                      |.|+||+|.++... ...+++|||||||||||+++|+++++......  ....++++|+|++|+.++++ |.++|+++..
T Consensus         1 v~v~GP~G~~~~~~-~~~~~~vlIagG~GItP~~s~l~~l~~~~~~~~~~~~~~~v~l~~~~r~~~~~~w~~~~l~~l~~   79 (186)
T 3a1f_A            1 IAVDGPFGTASEDV-FSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCRDTHAFEWFADLLQLLES   79 (186)
T ss_dssp             CCTTSTTSHHHHHH-TTSSEEEEEEEGGGHHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEEESCTTTTHHHHHHHHHHHH
T ss_pred             CeEECCCCCCccCh-hhCCeEEEEecCccHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEEECCcchHHHHHHHHHHHHH
Confidence            35789999876432 35689999999999999999999987652100  01147899999999999987 9999999987


Q ss_pred             hC-----CCceEEEEEecCCcccC------------CCCeeE----ecchH--HHhHHHHHHHhccCCeEEEEECCcchH
Q 043022          269 KA-----PENFRLDFAVSREQKNE------------KGEKMY----IQTRM--AEYANELWELLKKDNTYVYMCGLRGME  325 (361)
Q Consensus       269 ~~-----~~~~~~~~~~s~~~~~~------------~g~~~~----v~~~l--~~~~~~~~~~l~~~~~~vyvCGp~~m~  325 (361)
                      .+     ++++++++++|++....            .+..++    ...++  ....+.+......++..||+|||++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~gR~~~~~~~~~~~~~~~~~~~~v~~CGP~~m~  159 (186)
T 3a1f_A           80 QMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITGLKQKTLYGRPNWDNEFKTIASQHPNTRIGVFLCGPEALA  159 (186)
T ss_dssp             HHHHTTCTTSEEEEEEETTC-----------------------CCEEESCCCHHHHHHHHHHHSTTCEEEEEEESCHHHH
T ss_pred             HHhhccCCCeEEEEEEEcCCCCCcccceeeccccccccCCCCccccccCCCCHHHHHHHHHHhCCCCcEEEEEeCCHHHH
Confidence            64     44899999999863210            111110    00111  111222322222136789999999999


Q ss_pred             HHHHHHHHHHHHc
Q 043022          326 KGIDDIMVSLAAN  338 (361)
Q Consensus       326 ~~v~~~L~~~g~~  338 (361)
                      ++++++|.+.+..
T Consensus       160 ~~v~~~l~~~g~~  172 (186)
T 3a1f_A          160 ETLSKQSISNSES  172 (186)
T ss_dssp             HHHHHHHHHTCCC
T ss_pred             HHHHHHHHHhhcc
Confidence            9999999998763

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=92.03  E-value=0.29  Score=46.22  Aligned_cols=49  Identities=18%  Similarity=0.365  Sum_probs=43.4

Q ss_pred             CCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCC
Q 043022           82 KTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGV  130 (361)
Q Consensus        82 ~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~  130 (361)
                      ...+.++|+.+.+++...+..++++++|+.+..+.|.||+++.|.+.+.
T Consensus         4 ~~~~~a~v~~n~~Lt~~~~~~~~~hie~~l~~~~~Y~~GD~l~v~p~N~   52 (393)
T 4dql_A            4 HGAFSTNVVASKELQQPGSARSTRHLEIELPKEASYQEGDHLGVIPRNY   52 (393)
T ss_dssp             -CCEEEEEEEEEECSCTTCSCCEEEEEEECCTTCCCCTTCEEEECCCCC
T ss_pred             CCcEEEEEEeEEEcCCCCCCceEEEEEEECCCCCccCCCCEEEEEccCC
Confidence            3468899999999999878888999999998889999999999998764

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=91.83  E-value=0.32  Score=47.99  Aligned_cols=53  Identities=15%  Similarity=0.194  Sum_probs=43.4

Q ss_pred             cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022           78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV  130 (361)
Q Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~  130 (361)
                      .|....++.++|+.+.+++......++++|+|+.+. .+.|.||+++.|.+.+.
T Consensus       108 ~~~~~~~~~a~v~~~~~Lt~~~~~r~v~hield~~~~~l~Y~~GD~l~V~P~N~  161 (539)
T 2qtl_A          108 VTSADPVFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNS  161 (539)
T ss_dssp             -----CCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECCCC
T ss_pred             CCCCCCCEEEEEEeeEEcCCCCCCCcEEEEEEecCCCCcCcCCCCEEEEEeCCC
Confidence            456677999999999999998888899999999876 57899999999998764

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=91.17  E-value=0.31  Score=46.72  Aligned_cols=53  Identities=21%  Similarity=0.352  Sum_probs=46.0

Q ss_pred             cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCC
Q 043022           78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGV  130 (361)
Q Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~  130 (361)
                      .|....++.++|+++.+++...+..++++++|+...  .+.|.||+++.|.+.+.
T Consensus        24 ~~~~~~~~~a~v~~~~~l~~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~p~N~   78 (435)
T 1f20_A           24 NVHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNH   78 (435)
T ss_dssp             HHHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCC
T ss_pred             ccccCCcEEEEEEeEEECCCCCCCceEEEEEEECCCCCCCcCCCCCEEEEEecCC
Confidence            456677999999999999998888889999999854  58999999999998764

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*

Probab=89.73  E-value=0.65  Score=44.75  Aligned_cols=52  Identities=17%  Similarity=0.404  Sum_probs=44.6

Q ss_pred             cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022           78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV  130 (361)
Q Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~  130 (361)
                      .|....++.|+|+.+.+++.. +..++++++|+.+. .+.|.||+++.|.+.+.
T Consensus        56 ~~~~~~p~~a~v~~n~~Lt~~-~~r~~~hie~dl~~s~l~Y~~GD~l~V~p~N~  108 (458)
T 3qfs_A           56 PFDAKNPFLAAVTTNRKLNQG-TERHLMHLELDISDSKIRYESGDHVAVYPAND  108 (458)
T ss_dssp             CCCSSSCEEEEEEEEEECCSS-SSSCEEEEEEECTTSCCCCCTTCEEEECCCCC
T ss_pred             CCCCCCCEEEEEEEEEEcCCC-CCCCEEEEEEEeCCCCcccCCCCEEEEEeeCC
Confidence            466677999999999999984 56789999999865 69999999999998764

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=83.76  E-value=2  Score=43.63  Aligned_cols=51  Identities=22%  Similarity=0.360  Sum_probs=43.8

Q ss_pred             cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCC
Q 043022           80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGV  130 (361)
Q Consensus        80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~  130 (361)
                      ....++.++|+.+.+++......++++|+|+...  .+.|.||+++.|.+.+.
T Consensus       247 ~~~~~~~a~v~~~~~Lt~~~~~~~~~hiel~~~~~~~~~Y~~GD~l~V~P~N~  299 (688)
T 1tll_A          247 HKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNH  299 (688)
T ss_dssp             TTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCC
T ss_pred             ccCCceEEEEEeeeecCCCCCCceEEEEEEecCCCCCCccCCCCEEEEecCCC
Confidence            3446889999999999988778889999999854  58999999999998764

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=81.50  E-value=2.8  Score=41.91  Aligned_cols=51  Identities=18%  Similarity=0.416  Sum_probs=42.2

Q ss_pred             ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022           79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV  130 (361)
Q Consensus        79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~  130 (361)
                      |....++.++|+.+.+++.. +..++++++|+.+. .+.|.||+++.|.+.+.
T Consensus       217 ~~~~~~~~a~v~~n~~Lt~~-~~~~~~hie~~~~~~~~~Y~~GD~l~V~p~N~  268 (618)
T 3qe2_A          217 FDAKNPFLAAVTTNRKLNQG-TERHLMHLELDISDSKIRYESGDHVAVYPAND  268 (618)
T ss_dssp             CSSSSCEEEEEEEEEECSCC-SSSCEEEEEEECTTSCCCCCTTCEEEECCCCC
T ss_pred             cccCCcEEEEEEeEEEcCCC-CCCcEEEEEEEcCCCCcccccCCEEEEEcCCC
Confidence            33455799999999999865 45689999999865 68999999999998764

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=80.86  E-value=2.4  Score=42.94  Aligned_cols=51  Identities=20%  Similarity=0.403  Sum_probs=42.4

Q ss_pred             ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022           79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV  130 (361)
Q Consensus        79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~  130 (361)
                      |....++.++|+...+++. ....++++|+|+... .+.|.||+++.|.+.+.
T Consensus       254 ~~~~~p~~a~v~~~~~L~~-~~~~~~~hie~d~~~~~~~Y~~GD~l~V~P~N~  305 (682)
T 2bpo_A          254 FDLSQPYIAPIVKSRELFS-SNDRNCIHSEFDLSGSNIKYSTGDHLAVWPSNP  305 (682)
T ss_dssp             CBTTBCCCEEEEEEEECCC-CSSCCEEEEEEECTTBTCCCCTTCEEEECCCCC
T ss_pred             ccCCCceEEEEEEEEEccC-CCCCCEEEEEEEcCCCCceecCCCEEEEEcCCC
Confidence            3345678899999999998 566789999999854 78899999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	361
d1fnda1	136	b.43.4.2 (A:19-154) Ferredoxin reductase (flavodox	6e-50
d1fnda2	160	c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo	1e-47
d1jb9a1	157	b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxi	7e-47
d2bmwa1	133	b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxi	1e-39
d1jb9a2	154	c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo	2e-38
d2bmwa2	162	c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo	1e-37
d1ja1a3	160	c.25.1.4 (A:519-678) NADPH-cytochrome p450 reducta	1e-36
d1f20a2	165	c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth	2e-35
d1ddga2	153	c.25.1.4 (A:447-599) Sulfite reductase flavoprotei	1e-28
d2cnda2	146	c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea	3e-13
d1umka2	147	c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma	1e-12
d1cqxa3	142	c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d	1e-12
d1a8pa2	158	c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo	2e-12
d1fdra2	148	c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo	4e-12
d1gvha3	143	c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d	7e-12
d1ja1a1	279	b.43.4.1 (A:240-518) NADPH-cytochrome p450 reducta	4e-10
d1qfja2	135	c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase	4e-10
d1tvca2	141	c.25.1.2 (A:111-251) Methane monooxygenase compone	1e-09
d1f20a1	270	b.43.4.1 (A:963-1232) Neuronal nitric-oxide syntha	4e-09
d1krha2	133	c.25.1.2 (A:206-338) Benzoate dioxygenase reductas	3e-08
d1ddga1	221	b.43.4.1 (A:226-446) Sulfite reductase flavoprotei	3e-07
d1ddga1	221	b.43.4.1 (A:226-446) Sulfite reductase flavoprotei	2e-05
d2piaa2	120	c.25.1.2 (A:104-223) Phthalate dioxygenase reducta	4e-07
d1umka1	124	b.43.4.2 (A:30-153) cytochrome b5 reductase {Human	2e-05
d1ep3b2	160	c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase	2e-04
d1cqxa2	111	b.43.4.2 (A:151-261) Flavohemoglobin, central doma	2e-04
d2cnda1	114	b.43.4.2 (A:11-124) Nitrate reductase core domain	4e-04

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 136

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  162 bits (410), Expect = 6e-50
 Identities = 117/135 (86%), Positives = 128/135 (94%)

Query: 67  SKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVI 126
           SKKMEEG+ VNKFKPKTPY+GRCLLNTKITGDDAPGETWHMVFS EGE+PY+EGQS+GVI
Sbjct: 2   SKKMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVI 61

Query: 127 ADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDL 186
            DG DKN KPHKLRLYSIASSALGDFGD+K+VSLCVKRL+YTN+ GE +KGVCSNFLCDL
Sbjct: 62  PDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDL 121

Query: 187 KPGAEVKITGPVGKE 201
           KPGAEVK+TGPVGKE
Sbjct: 122 KPGAEVKLTGPVGKE 136

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  156 bits (395), Expect = 1e-47
 Identities = 143/160 (89%), Positives = 155/160 (96%)

Query: 202 MLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKE 261
           MLMP+DPNAT+IML TGTGIAPFR FLWKMFFEKH+DYKFNGLAWLFLGVPTSSSLLYKE
Sbjct: 1   MLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKE 60

Query: 262 EFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGL 321
           EFEKMKEKAP+NFRLDFAVSREQ NEKGEKMYIQTRMA+YA ELWE+LKKDNTYVYMCGL
Sbjct: 61  EFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGL 120

Query: 322 RGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           +GMEKGIDDIMVSLAA +GIDW++YK+QLKK+EQWNVEVY
Sbjct: 121 KGMEKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQWNVEVY 160

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 157

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score =  154 bits (391), Expect = 7e-47
 Identities = 70/162 (43%), Positives = 93/162 (57%), Gaps = 12/162 (7%)

Query: 52  RAQVTTEAPAKVEKESKKMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFST 111
           R++V+  AP  +E   +       +N +KPK P+    +    + G  APGET H+V   
Sbjct: 2   RSKVSV-APLHLESAKE-----PPLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDH 55

Query: 112 EGEVPYKEGQSIGVIADG--VDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVY-- 167
            G VPY EGQS GVI  G    K   P  +RLYSIAS+  GD  D +T SLCV+R VY  
Sbjct: 56  GGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYD 115

Query: 168 --TNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRD 207
             T +      GVCSNFLC+ KPG ++++TGP GK ML+P +
Sbjct: 116 PETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEE 157

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 133

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score =  135 bits (340), Expect = 1e-39
 Identities = 71/132 (53%), Positives = 90/132 (68%), Gaps = 2/132 (1%)

Query: 74  VIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDK 132
           V VN ++P  P+IG+ + N  +  +   G   H+ F   G  + Y EGQSIG+I  GVDK
Sbjct: 2   VPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDK 61

Query: 133 NAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYT-NENGEIVKGVCSNFLCDLKPGAE 191
           N KP KLRLYSIAS+  GD  D KT+SLCV++L Y   E+GE V GVCS +L  ++PG+E
Sbjct: 62  NGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSE 121

Query: 192 VKITGPVGKEML 203
           VKITGPVGKEML
Sbjct: 122 VKITGPVGKEML 133

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

 Score =  132 bits (333), Expect = 2e-38
 Identities = 84/155 (54%), Positives = 110/155 (70%), Gaps = 1/155 (0%)

Query: 207 DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKM 266
           DPNAT IM+ATGTG+APFRG+L +MF E   +Y+F GLAWLFLGV  S SLLY EEF   
Sbjct: 1   DPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSY 60

Query: 267 KEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEK 326
            ++ P+NFR D A+SREQKN  G KMY+Q ++ EY++E+++LL     ++Y CGL+GM  
Sbjct: 61  LKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLL-DGGAHIYFCGLKGMMP 119

Query: 327 GIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           GI D +  +A   G  W     QLKK++QW+VEVY
Sbjct: 120 GIQDTLKKVAERRGESWDQKLAQLKKNKQWHVEVY 154

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

 Score =  130 bits (328), Expect = 1e-37
 Identities = 83/162 (51%), Positives = 119/162 (73%), Gaps = 4/162 (2%)

Query: 204 MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHE----DYKFNGLAWLFLGVPTSSSLLY 259
           +P DP A VIMLA GTGI P R +LW+MF +       +Y+F G +WL  GVPT+ ++LY
Sbjct: 1   LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILY 60

Query: 260 KEEFEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMC 319
           KEE E++++K P+NFRL +A+SREQKN +G +MYIQ R+AE+A++LW+L+K   T+ Y+C
Sbjct: 61  KEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYIC 120

Query: 320 GLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           G   ME+GID  + + AA +G+ W DY+K LKK+ +W+VE Y
Sbjct: 121 GPPPMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVETY 162

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  128 bits (322), Expect = 1e-36
 Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 12/164 (7%)

Query: 204 MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSS-LLYKEE 262
           +P      VIM+  GTGIAPF GF+ +  + + E  K  G   L+ G   S    LY+EE
Sbjct: 2   LPFKSTTPVIMVGPGTGIAPFMGFIQERAWLR-EQGKEVGETLLYYGCRRSDEDYLYREE 60

Query: 263 FEKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCG-- 320
             +  +      +L+ A SREQ +    K+Y+Q  +      LW+L+ +   ++Y+ G  
Sbjct: 61  LARFHKDGA-LTQLNVAFSREQAH----KVYVQHLLKRDREHLWKLIHEGGAHIYVAGDA 115

Query: 321 ---LRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
               + ++    DI+      +    +DY K+L    ++++ V+
Sbjct: 116 RNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYSLNVW 159

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  125 bits (314), Expect = 2e-35
 Identities = 36/162 (22%), Positives = 60/162 (37%), Gaps = 6/162 (3%)

Query: 204 MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEF 263
           +PR+P    I++  GTGIAPFR F  +  F+            L  G   S       E 
Sbjct: 4   LPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREE 63

Query: 264 EKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG 323
               +       L  A SRE    K  K        + A  ++  LK+   ++Y+CG   
Sbjct: 64  TLQAKNKGVFRELYTAYSREPDRPK--KYVQDVLQEQLAESVYRALKEQGGHIYVCGDVT 121

Query: 324 MEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           M   +      IM         D   +  +L+   +++ +++
Sbjct: 122 MAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDIF 163

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

 Score =  106 bits (265), Expect = 1e-28
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 13/162 (8%)

Query: 204 MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEF 263
           +P +P   VIM+  GTGIAPFR F+ +   ++          WLF G P  +     +  
Sbjct: 1   LPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKN-----WLFFGNPHFTEDFLYQVE 55

Query: 264 EKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG 323
            +   K     R+D A SR+QK     K+Y+Q ++ E   ELW  +              
Sbjct: 56  WQRYVKEGVLTRIDLAWSRDQKE----KVYVQDKLREQGAELWRWINDGAHIYVCGDANR 111

Query: 324 MEKGID----DIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
           M K ++    +++      D     ++  +L+   ++  +VY
Sbjct: 112 MAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY 153

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

 Score = 64.2 bits (155), Expect = 3e-13
 Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 4/115 (3%)

Query: 212 VIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP 271
           + M+  G+GI P    +  +  ++ ED+       L     T   +L ++E ++   + P
Sbjct: 15  LAMICGGSGITPMYQIIQAVLRDQPEDHTEM---HLVYANRTEDDILLRDELDRWAAEYP 71

Query: 272 ENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEK 326
           +  ++ + + + ++ E+G K  +         E       D T    CG   M +
Sbjct: 72  DRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDD-TLALACGPPPMIQ 125

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (151), Expect = 1e-12
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 212 VIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP 271
           V M+A GTGI P    +  +  +  +         L     T   +L + E E+++ K  
Sbjct: 21  VGMIAGGTGITPMLQVIRAIMKDPDDHTVC----HLLFANQTEKDILLRPELEELRNKHS 76

Query: 272 ENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLK--KDNTYVYMCGLRGMEKGID 329
             F+L + + R  +     + ++   M      + + L   ++   V MCG   M   I 
Sbjct: 77  ARFKLWYTLDRAPEAWDYGQGFVNEEM------IRDHLPPPEEEPLVLMCGPPPM---IQ 127

Query: 330 DIMVSLAANDGID 342
              +    + G  
Sbjct: 128 YACLPNLDHVGHP 140

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 62.3 bits (150), Expect = 1e-12
 Identities = 15/129 (11%), Positives = 38/129 (29%), Gaps = 8/129 (6%)

Query: 207 DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKM 266
           D    +++++ G G+ P    L                     G   S+    ++   + 
Sbjct: 3   DAKTPIVLISGGVGLTPMVSMLKVALQAPPRQV------VFVHGARNSAVHAMRDRLREA 56

Query: 267 KEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEK 326
            +    N  L     +    +   + Y          ++ + +   +   Y+CG     +
Sbjct: 57  AKTYE-NLDLFVFYDQPLPEDVQGRDYDY-PGLVDVKQIEKSILLPDADYYICGPIPFMR 114

Query: 327 GIDDIMVSL 335
              D + +L
Sbjct: 115 MQHDALKNL 123

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

 Score = 62.3 bits (150), Expect = 2e-12
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 12/135 (8%)

Query: 208 PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKM- 266
           P   + ML+TGTG+APF   +     +  E Y+      L  GV   + L Y++   +  
Sbjct: 6   PGKHLYMLSTGTGLAPFMSLI-----QDPEVYERFEKVVLIHGVRQVNELAYQQFITEHL 60

Query: 267 ------KEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCG 320
                  E   E       V+RE  + +G    +      + +     +   +    +CG
Sbjct: 61  PQSEYFGEAVKEKLIYYPTVTRESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICG 120

Query: 321 LRGMEKGIDDIMVSL 335
              M     +++   
Sbjct: 121 SPSMLDESCEVLDGF 135

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

 Score = 61.2 bits (147), Expect = 4e-12
 Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 13/155 (8%)

Query: 208 PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMK 267
              T+ MLATGT I P+   L        +D        L      ++ L Y    ++++
Sbjct: 5   HCETLWMLATGTAIGPYLSIL-----RLGKDLDRFKNLVLVHAARYAADLSYLPLMQELE 59

Query: 268 EKAPENFRLDFAVSREQ-KNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEK 326
           ++     R+   VSRE        ++       E  + +   + K+ ++V +CG   M  
Sbjct: 60  KRYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQM-- 117

Query: 327 GIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY 361
            + D    L     +     K   ++      E Y
Sbjct: 118 -VRDTQQLLKETRQMT----KHLRRRPGHMTAEHY 147

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 60.3 bits (145), Expect = 7e-12
 Identities = 17/132 (12%), Positives = 41/132 (31%), Gaps = 7/132 (5%)

Query: 204 MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEF 263
           M    +  V +++ G G  P    L     +             F          + +E 
Sbjct: 1   MAVADDTPVTLISAGVGQTPMLAML-----DTLAKAGHTAQVNWFHAAENGDVHAFADEV 55

Query: 264 EKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG 323
           +++ +  P  F       +  + ++ +  +    + + + +L           Y+CG  G
Sbjct: 56  KELGQSLP-RFTAHTWYRQPSEADRAKGQFDSEGLMDLS-KLEGAFSDPTMQFYLCGPVG 113

Query: 324 MEKGIDDIMVSL 335
             +     +V L
Sbjct: 114 FMQFTAKQLVDL 125

>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 279

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.8 bits (139), Expect = 4e-10
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 136 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKIT 195
             + R Y+IASS+        +V +C   + Y  ++G + KGV +++L   +P  E    
Sbjct: 211 RLQARYYAIASSSKVH---PNSVHICAVAVEYEAKSGRVNKGVATSWLRAKEPAGENGGR 267

Query: 196 GPV 198
             V
Sbjct: 268 ALV 270

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 55.3 bits (132), Expect = 4e-10
 Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 15/136 (11%)

Query: 207 DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKM 266
           D    +I++A GTG +  R  L                  ++ G      L    E E +
Sbjct: 3   DEERPMILIAGGTGFSYARSILLTALARNPNRDI-----TIYWGGREEQHLYDLCELEAL 57

Query: 267 KEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEK 326
             K P    +      E    +G    + T +      L +        +Y+ G   M  
Sbjct: 58  SLKHPGLQVVPVVEQPEA-GWRGRTGTVLTAV------LQDHGTLAEHDIYIAGRFEM-- 108

Query: 327 GIDDIMVSLAANDGID 342
                     +     
Sbjct: 109 -AKIARDLFCSERNAR 123

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

 Score = 54.2 bits (129), Expect = 1e-09
 Identities = 26/132 (19%), Positives = 49/132 (37%), Gaps = 11/132 (8%)

Query: 204 MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEF 263
           +     A    +A GTG+AP    + +M      ++       ++ GV T   L Y +E 
Sbjct: 3   LKERGMAPRYFVAGGTGLAPVVSMVRQMQ-----EWTAPNETRIYFGVNTEPELFYIDEL 57

Query: 264 EKMKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG 323
           + ++     N  +   V     + +GE+      + E            N  +Y+CG  G
Sbjct: 58  KSLERSMR-NLTVKACVWHPSGDWEGEQGSPIDALREDLESSDA-----NPDIYLCGPPG 111

Query: 324 MEKGIDDIMVSL 335
           M     +++ S 
Sbjct: 112 MIDAACELVRSR 123

>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 270

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.7 bits (131), Expect = 4e-09
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 136 PHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE--IVKGVCSNFLCDLKPGAEVK 193
             + R YSI+SS          V L V  + Y   +GE  +  GVCS++L  ++    V 
Sbjct: 207 LLQPRYYSISSSPDMY---PDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVP 263

Query: 194 I 194
            
Sbjct: 264 C 264

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 13/130 (10%)

Query: 206 RDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEK 265
           RD    V+MLA GTGIAPF   L  +     E         L  GV     L+  E+ + 
Sbjct: 2   RDVKRPVLMLAGGTGIAPFLSMLQVL-----EQKGSEHPVRLVFGVTQDCDLVALEQLDA 56

Query: 266 MKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGME 325
           +++K P  F     V+  + ++   K Y+   +       ++ L      VY+CG   M 
Sbjct: 57  LQQKLP-WFEYRTVVAHAE-SQHERKGYVTGHI------EYDWLNGGEVDVYLCGPVPMV 108

Query: 326 KGIDDIMVSL 335
           + +   + + 
Sbjct: 109 EAVRSWLDTQ 118

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 221

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

 Score = 48.6 bits (115), Expect = 3e-07
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 135 KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVK 193
           +P   RLYSIASS          V + V  + Y  E G    G  S+FL D ++   EV+
Sbjct: 156 RPLTPRLYSIASSQAEV---ENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEGEVR 211

Query: 194 I 194
           +
Sbjct: 212 V 212

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 221

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 79  FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIA 127
           +    P +    +N KITG ++  +  H+        + Y+ G ++GV  
Sbjct: 6   YSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWY 55

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 14/132 (10%), Positives = 36/132 (27%), Gaps = 22/132 (16%)

Query: 206 RDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEK 265
                + I++A G GI P      ++  E    +       L+          + +E   
Sbjct: 5   DKRAKSFILVAGGIGITPMLSMARQLRAEGLRSF------RLYYLTRDPEGTAFFDELTS 58

Query: 266 MKEKAPENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGME 325
            +     + ++             +     +   +              +VY CG + + 
Sbjct: 59  DEW--RSDVKIHHDHGDP-----TKAFDFWSVFEKSK---------PAQHVYCCGPQALM 102

Query: 326 KGIDDIMVSLAA 337
             + D+     +
Sbjct: 103 DTVRDMTGHWPS 114

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 23/120 (19%), Positives = 35/120 (29%), Gaps = 10/120 (8%)

Query: 81  PKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLR 140
           P   Y  R +    I+ D     T    F+               I      +     +R
Sbjct: 9   PDIKYPLRLIDREIISHD-----TRRFRFALPSPQHILGLPVGQHIYLSARIDGNLV-VR 62

Query: 141 LYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGK 200
            Y+  SS      D   V L +K             G  S +L  ++ G  ++  GP G 
Sbjct: 63  PYTPISS----DDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGL 118

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 30/131 (22%)

Query: 212 VIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAP 271
           ++++  G G+ P      ++        K      + LG  + +  + + EF  +K    
Sbjct: 11  ILIIGGGIGVPPLYELAKQL-------EKTGCQMTILLGFASENVKILENEFSNLK---- 59

Query: 272 ENFRLDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGI--- 328
            N  L  A        KG               L   +  +   +Y CG   M K +   
Sbjct: 60  -NVTLKIATDDGSYGTKGHVG-----------MLMNEIDFEVDALYTCGAPAMLKAVAKK 107

Query: 329 ----DDIMVSL 335
               + + +S+
Sbjct: 108 YDQLERLYISM 118

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 111

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 116 PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGEIV 175
            ++ GQ   V  D         ++R YS++        + +T  + VKR       G   
Sbjct: 34  NFEPGQYTSVAIDVPALG--LQQIRQYSLSDMP-----NGRTYRISVKRE----GGGPQP 82

Query: 176 KGVCSNFLCD-LKPGAEVKITGPVG 199
            G  SN L D +  G +VK+  P G
Sbjct: 83  PGYVSNLLHDHVNVGDQVKLAAPYG 107

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]} Length = 114

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

 Score = 37.4 bits (86), Expect = 4e-04
 Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 10/113 (8%)

Query: 88  RCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASS 147
           R +   +++ D          FS               I        K   +R Y+  S 
Sbjct: 6   RLVAKKELSRD-----VRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLC-MRAYTPTSM 59

Query: 148 ALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGK 200
                       L VK             G+ + +L  L  G+ + + GP+G 
Sbjct: 60  VDEI----GHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGH 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d1fnda2	160	Ferredoxin reductase (flavodoxin reductase) {Spina	100.0
d1ja1a3	160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	99.98
d1jb9a2	154	Ferredoxin reductase (flavodoxin reductase) {Maize	99.98
d2bmwa2	162	Ferredoxin reductase (flavodoxin reductase) {Cyano	99.97
d1f20a2	165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	99.96
d1ddga2	153	Sulfite reductase flavoprotein {Escherichia coli [	99.95
d1tvca2	141	Methane monooxygenase component C, MmoC {Methyloco	99.93
d1krha2	133	Benzoate dioxygenase reductase {Acinetobacter sp.	99.92
d1fnda1	136	Ferredoxin reductase (flavodoxin reductase) N-term	99.91
d1qfja2	135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.9
d2bmwa1	133	Ferredoxin reductase (flavodoxin reductase) N-term	99.89
d1umka2	147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.88
d1fdra2	148	Ferredoxin reductase (flavodoxin reductase) {Esche	99.88
d1cqxa3	142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	99.87
d1jb9a1	157	Ferredoxin reductase (flavodoxin reductase) N-term	99.87
d1gvha3	143	Flavohemoglobin, C-terminal domain {Escherichia co	99.86
d2cnda2	146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	99.84
d2piaa2	120	Phthalate dioxygenase reductase {Pseudomonas cepac	99.8
d1a8pa2	158	Ferredoxin reductase (flavodoxin reductase) {Azoto	99.79
d1fdra1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.79
d1qfja1	97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.78
d1krha1	100	Benzoate dioxygenase reductase {Acinetobacter sp.	99.76
d1a8pa1	99	Ferredoxin reductase (flavodoxin reductase) N-term	99.74
d1tvca1	109	Methane monooxygenase component C, MmoC {Methyloco	99.73
d1ep3b1	101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.7
d2piaa1	103	Phthalate dioxygenase reductase {Pseudomonas cepac	99.68
d2cnda1	114	Nitrate reductase core domain {Corn (Zea mays) [Ta	99.68
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.67
d1gvha2	107	Flavohemoglobin, central domain {Escherichia coli	99.66
d1cqxa2	111	Flavohemoglobin, central domain {Alcaligenes eutro	99.66
d1umka1	124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.6
d1ja1a1	279	NADPH-cytochrome p450 reductase {Rat (Rattus norve	99.36
d1ddga1	221	Sulfite reductase flavoprotein {Escherichia coli [	99.34
d1f20a1	270	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	99.33
d1f20a1	270	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	93.9
d1ja1a1	279	NADPH-cytochrome p450 reductase {Rat (Rattus norve	93.31

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=8.4e-33  Score=231.68  Aligned_cols=159  Identities=89%  Similarity=1.480  Sum_probs=143.9

Q ss_pred             CCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecC
Q 043022          203 LMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSR  282 (361)
Q Consensus       203 ~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~  282 (361)
                      .+|.++.+|+||||||||||||+|||++++..........++++||||+|+.+|++|.+|+.++.+.+...+.+.+..++
T Consensus         2 ~LP~d~~~plilIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~~~~~~~s~   81 (160)
T d1fnda2           2 LMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSR   81 (160)
T ss_dssp             CCBSCTTCEEEEEEEGGGGHHHHHHHHHHHSCCBTTBCCCSEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEEETT
T ss_pred             CCCCCCCCCEEEEECchhHHHHHHHHHHHHHhhcccccCCceEEEEeecCcHHHHHHHHHHHHHHHhcCCceeEEEEEcc
Confidence            46778889999999999999999999998765544444457899999999999999999999999998878899999999


Q ss_pred             CcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          283 EQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       283 ~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +...+.+.+.++++.+......+.+.+..+++.||+|||++|+++|.++|.+++..++..+++|+++|+++|||++|||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyiCGp~~m~~~v~~~l~~~~~~~g~~a~~~~~~l~~~~ry~~e~~  160 (160)
T d1fnda2          82 EQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQWNVEVY  160 (160)
T ss_dssp             TCBCTTCCBCCHHHHHHTTHHHHHHHHTSTTEEEEEEECHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCEEEEEC
T ss_pred             chhccCCCcceehhhHHHHHHHHHHhhccCCCEEEEeCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHcCCeEEecC
Confidence            9888888999999999888888887776678999999999999999999999999999999999999999999999999

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=1.7e-32  Score=229.34  Aligned_cols=152  Identities=30%  Similarity=0.564  Sum_probs=131.6

Q ss_pred             CCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCc-ccccHHHHHHHHHhCCCceEEEEEecC
Q 043022          204 MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAVSR  282 (361)
Q Consensus       204 ~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~s~  282 (361)
                      +|.++.+|+||||+|||||||++||+++....... ...++++||||+|+.+ |++|.+||+++.+.++ ++++++++|+
T Consensus         2 lP~~~~~PiimIa~GTGIAPf~s~l~~r~~~~~~~-~~~g~~~L~~G~R~~~~d~~y~~el~~~~~~~~-~~~~~~a~Sr   79 (160)
T d1ja1a3           2 LPFKSTTPVIMVGPGTGIAPFMGFIQERAWLREQG-KEVGETLLYYGCRRSDEDYLYREELARFHKDGA-LTQLNVAFSR   79 (160)
T ss_dssp             CCSSTTSCEEEECCGGGGHHHHHHHHHHHHHHHTT-CCCCCEEEEEEESCTTTCCTTHHHHHHHHHTTS-SSEEEEEETT
T ss_pred             cCcCCCCCEEEEEccHhHHHHHHHHHHHHHHHHcC-CCCCCEEEEEecCCccccHHHHHHHHHHHHcCC-CceeEEEeec
Confidence            56678899999999999999999998754432221 1247999999999986 8999999999999887 8999999999


Q ss_pred             CcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCc-chHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCee
Q 043022          283 EQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLR-GMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWN  357 (361)
Q Consensus       283 ~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~-~m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~  357 (361)
                      ++.    .+.|||+.+.++.+.+.+.+..+++.||+|||+ .|.++|+++|.++..+.+    ..+++|+++|+++|||+
T Consensus        80 ~~~----~~~yvq~~~~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~l~~i~~~~~~~~~~~a~~~~~~l~~~~r~~  155 (160)
T d1ja1a3          80 EQA----HKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAKDVQNTFYDIVAEFGPMEHTQAVDYVKKLMTKGRYS  155 (160)
T ss_dssp             SSS----SCCCHHHHHHHTHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred             ccc----CccccchHHHHHHHHHHHHHhcCCcEEEEeCCCccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCeE
Confidence            865    678999999999999999887678999999975 799999999999888765    45888999999999999


Q ss_pred             EeeC
Q 043022          358 VEVY  361 (361)
Q Consensus       358 ~ev~  361 (361)
                      +|||
T Consensus       156 ~dv~  159 (160)
T d1ja1a3         156 LNVW  159 (160)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            9999

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.98  E-value=8.2e-32  Score=224.21  Aligned_cols=154  Identities=55%  Similarity=0.995  Sum_probs=133.3

Q ss_pred             CCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCccc
Q 043022          207 DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKN  286 (361)
Q Consensus       207 ~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~  286 (361)
                      ++++|+||||||||||||+|||++++.......+..++++||||+|+..|++|.+|+.++.+++...+.+..+.+++...
T Consensus         1 Dp~~plllIa~GtGIaP~~s~l~~~~~~~~~~~~~~~~i~l~~g~r~~~d~~y~~e~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d1jb9a2           1 DPNATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDEEFTSYLKQYPDNFRYDKALSREQKN   80 (154)
T ss_dssp             CTTCEEEEEEEGGGGHHHHHHHHHHHTEECTTCCCCSEEEEEEEESSGGGCSSHHHHHHHHHHCTTTEEEEEEETTTCC-
T ss_pred             CCCCCEEEEEcceeHHHHHHHHHHHHHhccccccCCceEEEEEEecccchhHHHHHHHHHHHhCCCCEEEEEEeccCCcC
Confidence            35689999999999999999999988654443334578999999999999999999999999988788888888888777


Q ss_pred             CCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          287 EKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       287 ~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      |.+.++++++.+....+.+...+. .++.+|+|||+.|+++|.++|.+++.+.+..+++++++|+++|||++|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~yvCGp~~mm~~v~~~L~~~~~~~g~~~~~~~~~l~~~~r~~~d~w  154 (154)
T d1jb9a2          81 RSGGKMYVQDKIEEYSDEIFKLLD-GGAHIYFCGLKGMMPGIQDTLKKVAERRGESWDQKLAQLKKNKQWHVEVY  154 (154)
T ss_dssp             ---CCCCHHHHHHHTHHHHHHHHH-TTCEEEEEECGGGHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCEEEEEC
T ss_pred             cCCcccccchHHHHhHHHhhhccc-CCCEEEEECCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHCCCEEEecC
Confidence            777888898888887777766665 68899999999999999999999999999999999999999999999999

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.97  E-value=1.2e-30  Score=218.64  Aligned_cols=158  Identities=53%  Similarity=1.056  Sum_probs=139.1

Q ss_pred             CCCCCCCcEEEEecCCchhhHHHHHHHHHhhcc----cccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEE
Q 043022          204 MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKH----EDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFA  279 (361)
Q Consensus       204 ~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~----~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~  279 (361)
                      +|.++.+|+||||||||||||+|||++++....    ......++++|+||+|+.+|++|.+++.++..+++..+.+++.
T Consensus         1 lP~d~~~~~llIagGtGIaP~~s~l~~~~~~~~~~~~~~~~~~~~~~L~~g~r~~~d~~~~~e~~~~~~~~~~~~~~~~~   80 (162)
T d2bmwa2           1 LPDDPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPNILYKEELEEIQQKYPDNFRLTYA   80 (162)
T ss_dssp             CCSCTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCCCCSCEEEEEEESSGGGCTTHHHHHHHHHHCTTTEEEEEE
T ss_pred             CCcCCCCCEEEEEcceeHHHHHHHHHHHHHccccccccccCcCCCEEEEEecCchhHHHHHHHHHHHHHhcCCceEEEEE
Confidence            477788999999999999999999998865321    1122246899999999999999999999999988878889999


Q ss_pred             ecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccCCCHHHHHHHHHHcCCeeEe
Q 043022          280 VSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDGIDWLDYKKQLKKSEQWNVE  359 (361)
Q Consensus       280 ~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~e  359 (361)
                      .++....+.+.+.++++...+..+.+...+...+..+|+|||++|+++|.++|.++|..++..+++|+++|++.|||++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~~~~~~~~~l~~~~r~~~e  160 (162)
T d2bmwa2          81 ISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVE  160 (162)
T ss_dssp             ETTTCBCTTSSBCCHHHHHHHTHHHHHHHHTSTTEEEEEEECTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTCEEEE
T ss_pred             eecccccccCCcchhhhhHHHHHHHHhhhcccCCCEEEEECCHHHHHHHHHHHHHhhcccCccHHHHHHHHHHCCCeEEe
Confidence            99988888888889888888877777776766789999999999999999999999999999999999999999999999


Q ss_pred             eC
Q 043022          360 VY  361 (361)
Q Consensus       360 v~  361 (361)
                      ||
T Consensus       161 ~~  162 (162)
T d2bmwa2         161 TY  162 (162)
T ss_dssp             EC
T ss_pred             cC
Confidence            99

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=8.1e-30  Score=214.64  Aligned_cols=156  Identities=26%  Similarity=0.431  Sum_probs=126.2

Q ss_pred             cCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCc-ccccHHHHHHHHHhCCCceEEEEEe
Q 043022          202 MLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKEKAPENFRLDFAV  280 (361)
Q Consensus       202 ~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~~  280 (361)
                      |.+|.++.+|+||||||||||||+|||+++............++++||++++.. +++|.+++.++....+ ++++++++
T Consensus         2 F~Lp~~~~~plvlIa~GtGIaP~~s~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~   80 (165)
T d1f20a2           2 FHLPRNPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGV-FRELYTAY   80 (165)
T ss_dssp             SSCCSCTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEESCTTTSCTTHHHHHHHHHTTS-EEEEEEEE
T ss_pred             CCCCCCCCCCEEEEEcchhHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccHHHHHHHHHHHHHHhcCC-ceEEEEEE
Confidence            778888889999999999999999999876543221111235677888887765 6789999999998877 99999999


Q ss_pred             cCCcccCCCCeeEecchHHHh-HHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCC
Q 043022          281 SREQKNEKGEKMYIQTRMAEY-ANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQ  355 (361)
Q Consensus       281 s~~~~~~~g~~~~v~~~l~~~-~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r  355 (361)
                      |++.+.   ..+++++.+... .+.+...+...++.+|+|||++|+++|+++|.+++..++    .++++|+++|+++||
T Consensus        81 sr~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~yiCGp~~M~~~v~~~L~~i~~~~~~~~~~~a~~~~~~l~~~~r  157 (165)
T d1f20a2          81 SREPDR---PKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNR  157 (165)
T ss_dssp             SSCTTS---CCCCHHHHHHHHSHHHHHHHHHTSCCEEEEEECHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred             eccccC---CCCcccchHHHHHHHHHHhhccCCCcEEEEECCcchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Confidence            998654   345666666553 445666666578999999999999999999999988765    568899999999999


Q ss_pred             eeEeeC
Q 043022          356 WNVEVY  361 (361)
Q Consensus       356 ~~~ev~  361 (361)
                      |++|||
T Consensus       158 ~~~ev~  163 (165)
T d1f20a2         158 YHEDIF  163 (165)
T ss_dssp             EEEEEC
T ss_pred             EEEecc
Confidence            999999

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.9e-28  Score=203.42  Aligned_cols=147  Identities=33%  Similarity=0.684  Sum_probs=121.0

Q ss_pred             CCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCC-cccccHHHHHHHHHhCCCceEEEEEecC
Q 043022          204 MPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTS-SSLLYKEEFEKMKEKAPENFRLDFAVSR  282 (361)
Q Consensus       204 ~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~-~d~~~~~el~~l~~~~~~~~~~~~~~s~  282 (361)
                      +|.++.+|+||||||||||||+|||+++.....     .++++++|++++. ++++|.+|+.++.+.++ ++++++++++
T Consensus         1 LP~d~~~plvlIa~GtGIaP~~s~l~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~el~~~~~~~~-~~~~~~~~s~   74 (153)
T d1ddga2           1 LPANPETPVIMIGPGTGIAPFRAFMQQRAADEA-----PGKNWLFFGNPHFTEDFLYQVEWQRYVKEGV-LTRIDLAWSR   74 (153)
T ss_dssp             CCSSTTSCEEEECCGGGGHHHHHHHHHHHHHTC-----CSCEEEEEEESCHHHHCTTHHHHHHHHHTTS-CCEEEEEETT
T ss_pred             CCcCCCCCEEEEECchhHHHHHHHHHHHHHhcC-----CCceEEeecccCcHHHHHhHHHHHHHHHcCC-CceEEEEEEe
Confidence            466788999999999999999999998876543     2567777777665 58899999999999887 9999999998


Q ss_pred             CcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcc-hHHHHHHHHHHHHHccC----CCHHHHHHHHHHcCCee
Q 043022          283 EQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRG-MEKGIDDIMVSLAANDG----IDWLDYKKQLKKSEQWN  357 (361)
Q Consensus       283 ~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~-m~~~v~~~L~~~g~~~~----~~~~~~~~~l~~~~r~~  357 (361)
                      +..    ...++++.+..........+. .+..+|+|||+. |+++|+++|.+++.+.+    ..+++|+++|++.|||+
T Consensus        75 ~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~yiCG~p~~~~~~v~~~L~~~~~~~~~~~~e~a~~~~~~l~~~gR~~  149 (153)
T d1ddga2          75 DQK----EKVYVQDKLREQGAELWRWIN-DGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQ  149 (153)
T ss_dssp             SSS----SCCCHHHHHHHTHHHHHHHHH-TTCEEEEEECTTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCEE
T ss_pred             ccc----CcccccchHHHHHHHHHhhhc-cCCEEEEECCCcchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCeE
Confidence            865    445667777666655555554 578999999775 56999999999998876    56888999999999999


Q ss_pred             EeeC
Q 043022          358 VEVY  361 (361)
Q Consensus       358 ~ev~  361 (361)
                      +|||
T Consensus       150 ~e~~  153 (153)
T d1ddga2         150 RDVY  153 (153)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            9999

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.93  E-value=2.2e-26  Score=188.35  Aligned_cols=128  Identities=20%  Similarity=0.277  Sum_probs=110.4

Q ss_pred             cCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEec
Q 043022          202 MLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVS  281 (361)
Q Consensus       202 ~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s  281 (361)
                      |.++.+..+|+|||||||||||+++|+++++..+.     ..+++|+|++|+.+|++|.++|++|.++++ +++++++++
T Consensus         1 F~l~~~~~~p~vliagGtGItP~~s~l~~~~~~~~-----~~~v~l~~~~r~~~d~~~~~el~~l~~~~~-~~~~~~~~~   74 (141)
T d1tvca2           1 FGLKERGMAPRYFVAGGTGLAPVVSMVRQMQEWTA-----PNETRIYFGVNTEPELFYIDELKSLERSMR-NLTVKACVW   74 (141)
T ss_dssp             CSCCCCSSSCEEEEEESSTTHHHHHHHHHHHHHTC-----CSCEEEEEECSSSTTCCCHHHHHHHHHHSS-SCEEEECCS
T ss_pred             CCCCCCCCCcEEEEECchhHHHHHHHHHHHHHcCC-----CCceEEEeecccchhhhhHHHHHHHHhhcc-ccccceeec
Confidence            45666778999999999999999999999887653     368999999999999999999999999888 999999999


Q ss_pred             CCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022          282 REQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       282 ~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                      ++..+|.+.++++++.+.+...   ...  .+..||+|||++|++++.+.|.+.|.+.+
T Consensus        75 ~~~~~~~~~~g~~~~~~~~~~~---~~~--~~~~vyiCGp~~m~~~v~~~l~~~Gv~~~  128 (141)
T d1tvca2          75 HPSGDWEGEQGSPIDALREDLE---SSD--ANPDIYLCGPPGMIDAACELVRSRGIPGE  128 (141)
T ss_dssp             SCSSCCSSSSSSSSHHHHHHHH---HSS--SSSEEEEESSHHHHHHHHHHHHHHCCCCS
T ss_pred             ccccCcCCccchhHHHHHHhcc---ccc--ccceeeccCCHHHHHHHHHHHHHcCCCHH
Confidence            9988999999999887765432   212  46789999999999999999999988753

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.92  E-value=2.1e-25  Score=180.64  Aligned_cols=121  Identities=25%  Similarity=0.385  Sum_probs=103.6

Q ss_pred             CCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCccc
Q 043022          207 DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKN  286 (361)
Q Consensus       207 ~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~  286 (361)
                      +..+|+||||||||||||++|++++...+.     ..+++|+||+|+.+|++|.++|++|.++++ +|++++++++++ .
T Consensus         3 d~~rplv~IAgG~GItP~~s~l~~~~~~~~-----~~~i~l~~~~r~~~d~~~~~el~~l~~~~~-~~~~~~~~s~~~-~   75 (133)
T d1krha2           3 DVKRPVLMLAGGTGIAPFLSMLQVLEQKGS-----EHPVRLVFGVTQDCDLVALEQLDALQQKLP-WFEYRTVVAHAE-S   75 (133)
T ss_dssp             CCSSCEEEEEEGGGHHHHHHHHHHHHHHCC-----SSCEEEEEEESSGGGCCCHHHHHHHHHHCT-TEEEEEEETTCC-S
T ss_pred             CCCCCEEEEEccHhHHHHHHHHHHHHHcCC-----CCceEEEEeecchhHHHHHHHHHHHHHhCC-ceeeeeeeeccc-c
Confidence            455899999999999999999999887653     368999999999999999999999999988 999999999874 4


Q ss_pred             CCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022          287 EKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       287 ~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                      |.+.++++++.+.+..      ++..+..||+|||++|++++.+.|.+.|...+
T Consensus        76 ~~~~~g~v~~~i~~~~------~~~~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~  123 (133)
T d1krha2          76 QHERKGYVTGHIEYDW------LNGGEVDVYLCGPVPMVEAVRSWLDTQGIQPA  123 (133)
T ss_dssp             SSSEESCSGGGCCGGG------GGGGCSEEEEEEEHHHHHHHHHHHHHHTCCCS
T ss_pred             cccccchhHHHHHHhh------cccccceEEEECCHHHHHHHHHHHHHcCCCHH
Confidence            6677889888876532      33357889999999999999999999988653

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.91  E-value=3.5e-24  Score=172.79  Aligned_cols=132  Identities=86%  Similarity=1.453  Sum_probs=118.6

Q ss_pred             ccccccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCC
Q 043022           69 KMEEGVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSA  148 (361)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p  148 (361)
                      ..+..++++.|.|..++.++|+++.+++...+..++++|.++.++.++|+||||+.|.+++.+.++.++.+|.|||||+|
T Consensus         4 ~~~~~~~~~~y~p~~P~~a~V~~~~~lt~~~~~~~t~~i~~~~~~~~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSIaSsP   83 (136)
T d1fnda1           4 KMEEGITVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSA   83 (136)
T ss_dssp             BSCTTCCCCSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTCCCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCT
T ss_pred             cccCCcceeeecCCCCeEEEEEeEEEccCCCCCceEEEEecccCCCCcccCCCEEEEECCCcccccccceeEEeecccCC
Confidence            34556777899999999999999999998888888999999999999999999999999887777778889999999999


Q ss_pred             CCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCC
Q 043022          149 LGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGK  200 (361)
Q Consensus       149 ~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~  200 (361)
                      .....+.+.++|+||++.|.....+.++|.||+||++|++||+|.|.||+|+
T Consensus        84 ~~~~~~~~~l~~~Vk~~~~~~~~~~~~~G~~S~~L~dLk~GD~V~v~GP~Gk  135 (136)
T d1fnda1          84 LGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGK  135 (136)
T ss_dssp             TCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHTCCTTCEEEEEEEECS
T ss_pred             cCCCCCCcEEEEEEEEeecccCCCcCCCceEehhhccCCCcCEEEEeCCCCC
Confidence            7544356899999999988888888889999999999999999999999996

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.4e-23  Score=170.04  Aligned_cols=122  Identities=20%  Similarity=0.226  Sum_probs=103.3

Q ss_pred             CCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCccc
Q 043022          207 DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKN  286 (361)
Q Consensus       207 ~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~  286 (361)
                      +..+|+|||||||||||+++|+++++..+.     .++++|+||+|+.++++|.+++.+|..+++ ++.+.+..++....
T Consensus         3 d~~rplv~IagGtGiaP~~s~l~~~~~~~~-----~~~v~l~~~~r~~~~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~   76 (135)
T d1qfja2           3 DEERPMILIAGGTGFSYARSILLTALARNP-----NRDITIYWGGREEQHLYDLCELEALSLKHP-GLQVVPVVEQPEAG   76 (135)
T ss_dssp             CSSSCEEEEEETTCHHHHHHHHHHHHHHCT-----TCCEEEEEEESSGGGCTTHHHHHHHHHHCT-TEEEEEEESSCCTT
T ss_pred             CCCCCEEEEECceeHHHHHHHHHHHHHccc-----ccceeEEEecccHhHHHHHHHHHHHHHhcC-ccceeeeecccCcc
Confidence            566899999999999999999999887543     368999999999999999999999999988 89998888888888


Q ss_pred             CCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHH-HHHHHccC
Q 043022          287 EKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIM-VSLAANDG  340 (361)
Q Consensus       287 ~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L-~~~g~~~~  340 (361)
                      |.+..+++++.+.+.      ....++..+|+|||+.|++++.+.| ++.|.+.+
T Consensus        77 ~~~~~g~~~~~~~~~------~~~~~~~~~yvCGp~~m~~~~~~~L~~~~G~~~~  125 (135)
T d1qfja2          77 WRGRTGTVLTAVLQD------HGTLAEHDIYIAGRFEMAKIARDLFCSERNARED  125 (135)
T ss_dssp             CCSEESCHHHHHHHH------CSCCTTCEEEEESCHHHHHHHHHHHHHHSCCCGG
T ss_pred             cccccCchHHHHHHh------ccCcccCceEeeCCHHHHHHHHHHHHHHcCCCHH
Confidence            888888887766542      2333578999999999999999987 56777654

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=99.89  E-value=1.2e-22  Score=163.73  Aligned_cols=130  Identities=55%  Similarity=0.924  Sum_probs=112.1

Q ss_pred             cccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCC
Q 043022           74 VIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDF  152 (361)
Q Consensus        74 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~  152 (361)
                      ++.+.|.|.+++.|+|+++++++...+..++++++++.++ .++|.||||+.|.+++.+.++.....|.|||+|.|..+.
T Consensus         2 ~p~~~~~~~~P~~a~V~~~~~lt~~~~~~~v~~i~~~~~~~~~~y~pGQ~v~v~~p~~~~~~~~~~~R~YSias~p~~~~   81 (133)
T d2bmwa1           2 VPVNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDD   81 (133)
T ss_dssp             CCCCSBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSCCCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTT
T ss_pred             CCccccCCCCCeEEEEEEEEEccCCCCCceEEEEEEccCCccCCccCCCEEEEEeccccccccccceeeeeecCCCcCCC
Confidence            4567889999999999999999998888889999999866 689999999999999877666666789999999997654


Q ss_pred             CCCcEEEEEEEEeeEec-CCCceecCccchhhhcCCCCCEEEEEccCCCCcC
Q 043022          153 GDSKTVSLCVKRLVYTN-ENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEML  203 (361)
Q Consensus       153 ~~~~~l~~~V~~~~~~~-~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~  203 (361)
                      .+.+.++|+||++.+.. ..+..++|.+|+||+++++||+|.|.||+|++|+
T Consensus        82 ~~~~~~~~~Vk~~~~~~~~~~~~~~G~~S~yL~~lk~GD~v~v~GP~G~~fL  133 (133)
T d2bmwa1          82 VDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGKEML  133 (133)
T ss_dssp             TSSSEEEEEEECCEECSSSSSSCEECHHHHHHHTCCTTCEEEEEEEECSSSC
T ss_pred             CCccEEEEEEEeccccccccCCCCCcEehhhHhhCCCCCEEEEeCCccceeC
Confidence            45679999999886543 3445678999999999999999999999999774

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.2e-23  Score=170.46  Aligned_cols=136  Identities=18%  Similarity=0.285  Sum_probs=106.4

Q ss_pred             ccCCCCcCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceE
Q 043022          196 GPVGKEMLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFR  275 (361)
Q Consensus       196 gP~G~~~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~  275 (361)
                      .|.+++.... +..++++|||||||||||++|+++++.+...    .++++|+|++|+.+|++|.+||++|.++++.+++
T Consensus         6 ~p~~~~~~~~-~~~k~i~lIagGtGItP~~s~l~~~l~~~~~----~~~i~L~~~~r~~~~~~~~~el~~l~~~~~~~~~   80 (147)
T d1umka2           6 RPDKKSNPII-RTVKSVGMIAGGTGITPMLQVIRAIMKDPDD----HTVCHLLFANQTEKDILLRPELEELRNKHSARFK   80 (147)
T ss_dssp             CSSTTSCCEE-EECSEEEEEEEGGGHHHHHHHHHHHHTCTTC----CCEEEEEEEESSGGGCTTHHHHHHHHHHCTTTEE
T ss_pred             cCCCCCCccc-ccCCeEEEEECCeecchHHHHHHHHHhcCCC----CceEEEEEEeCccccchhHHHHhhhhhhcCcceE
Confidence            3444433222 4558899999999999999999998754322    3689999999999999999999999998877999


Q ss_pred             EEEEecCCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHH-HHHHHHHHHHccC
Q 043022          276 LDFAVSREQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG-IDDIMVSLAANDG  340 (361)
Q Consensus       276 ~~~~~s~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~-v~~~L~~~g~~~~  340 (361)
                      +++.++++...|.+.++++.+.+.+   +...... ++..+|+|||+.|++. +++.|.++|...+
T Consensus        81 ~~~~~~~~~~~~~~~~g~~~~~~l~---~~~~~~~-~~~~vyiCGP~~m~~~~~~~~L~~~G~~~e  142 (147)
T d1umka2          81 LWYTLDRAPEAWDYGQGFVNEEMIR---DHLPPPE-EEPLVLMCGPPPMIQYACLPNLDHVGHPTE  142 (147)
T ss_dssp             EEEEESSCCSSCSSEESSCCHHHHH---HHSCCGG-GCCEEEEESCHHHHHHTTHHHHHHHTCCGG
T ss_pred             EEEEecccccCcccceeehHHHHHH---HhcCCCc-CCcEEEEeCCHHHHHHHHHHHHHHcCCCHH
Confidence            9999999888888888888655432   1211122 4788999999999985 7889999988753

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=3.7e-23  Score=170.18  Aligned_cols=139  Identities=19%  Similarity=0.226  Sum_probs=99.5

Q ss_pred             CCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccCC
Q 043022          209 NATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNEK  288 (361)
Q Consensus       209 ~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~~  288 (361)
                      .+++||||||||||||+||+++++..+.     .++++||||+|+.+|++|.++++++.++.++...+.++.++++ .+.
T Consensus         6 ~k~lvlIa~GtGiaP~~s~l~~~~~~~~-----~~~v~l~~g~r~~~d~~~~~el~~~~~~~~~~~~~~~~~~~~~-~~~   79 (148)
T d1fdra2           6 CETLWMLATGTAIGPYLSILRLGKDLDR-----FKNLVLVHAARYAADLSYLPLMQELEKRYEGKLRIQTVVSRET-AAG   79 (148)
T ss_dssp             CSEEEEEEEGGGGHHHHHHHHHCCSCTT-----CSEEEEEEEESSGGGCTTHHHHHHHHHHTTTSEEEEEEESSSC-CTT
T ss_pred             CCEEEEEEcCeEHHHHHHHHHHHHHhCC-----CCcEEEEEecCcHHHHHHHHHhhhHHHhccccccccccccCcc-ccc
Confidence            4789999999999999999998765432     4799999999999999999999999999884444455555543 333


Q ss_pred             CCeeEecchHHHh--HHHHHHHhccCCeEEEEECCcchHHHHHHHHHHH-HHccCCCHHHHHHHHHHcCCeeEeeC
Q 043022          289 GEKMYIQTRMAEY--ANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSL-AANDGIDWLDYKKQLKKSEQWNVEVY  361 (361)
Q Consensus       289 g~~~~v~~~l~~~--~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~-g~~~~~~~~~~~~~l~~~~r~~~ev~  361 (361)
                      +..+++.+.+...  .+.+...+..+...||+|||++|++++.+.|.+. |..++.        ..+.|+|++|-|
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vyiCGp~~m~~~v~~~L~e~~g~~e~~--------~~~~g~i~~E~~  147 (148)
T d1fdra2          80 SLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLKETRQMTKHL--------RRRPGHMTAEHY  147 (148)
T ss_dssp             EEESCHHHHHHTSHHHHHHTSCCCTTTEEEEEEECHHHHHHHHHHHHHHHCCCBCB--------TTBCCSEEEEEC
T ss_pred             cccccccchHHHHHHHHhhccccccccceEEEECCHHHHHHHHHHHHHhcCCCccC--------CCCCCeEEEEeC
Confidence            3444444433321  1222222333577899999999999999999864 444432        234688998875

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.87  E-value=1.7e-22  Score=164.93  Aligned_cols=124  Identities=11%  Similarity=0.199  Sum_probs=94.8

Q ss_pred             CCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCccc
Q 043022          207 DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKN  286 (361)
Q Consensus       207 ~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~  286 (361)
                      +..+|+||||||||||||++|+++++...      ..+++|+|++|+.++++|.+++.++.++++ +++++++++++...
T Consensus         3 d~~~plvliagGtGIaP~~sil~~~~~~~------~~~i~li~~~r~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   75 (142)
T d1cqxa3           3 DAKTPIVLISGGVGLTPMVSMLKVALQAP------PRQVVFVHGARNSAVHAMRDRLREAAKTYE-NLDLFVFYDQPLPE   75 (142)
T ss_dssp             TCCSCEEEEESSCCHHHHHHHHHHHTCSS------CCCEEEEEEESCSSSCHHHHHHHHHHHHCT-TEEEEEEESSCCTT
T ss_pred             CCCCCEEEEEcceeHHHHHHHHHHHHHcC------CCcEEEEeeccChhhhhhHHHHHHHHHhCC-CeEEEEEEcccCCc
Confidence            45689999999999999999999876433      368999999999999999999999999988 99999999987543


Q ss_pred             CCCCe-eEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022          287 EKGEK-MYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       287 ~~g~~-~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                      +.... .........  +.+...+...+..+|+|||+.|++++.+.|.++|...
T Consensus        76 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~vyiCGp~~m~~~v~~~L~~~G~~~  127 (142)
T d1cqxa3          76 DVQGRDYDYPGLVDV--KQIEKSILLPDADYYICGPIPFMRMQHDALKNLGIHE  127 (142)
T ss_dssp             CCBTTTBSEESSCCG--GGSHHHHCCTTCEEEEESSHHHHHHHHHHHHHTTCCG
T ss_pred             ccccccccchhhhHH--HHHHhhcccCCceEEEECChhHHHHHHHHHHHcCCCH
Confidence            32111 111111111  1111223336789999999999999999999988764

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=99.87  E-value=1.3e-21  Score=160.74  Aligned_cols=135  Identities=47%  Similarity=0.834  Sum_probs=116.5

Q ss_pred             ccccccccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCC--CCCCCCCceecccccCCCC
Q 043022           73 GVIVNKFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVD--KNAKPHKLRLYSIASSALG  150 (361)
Q Consensus        73 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~--~~~~~~~~R~ySias~p~~  150 (361)
                      ..+.+.|.+..++.|+|+++..++.+.+..+++++.|+.++.+.|+|||++.|.+++.+  ..+.++++|.|||||+|..
T Consensus        17 e~p~~~y~~~nP~~a~v~~n~~Lt~~~s~k~t~hie~dl~~~~~y~~Gq~lgI~p~~~~~~~~~~p~~~R~YSIaSSp~~   96 (157)
T d1jb9a1          17 EPPLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGNVPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYG   96 (157)
T ss_dssp             SCCCCSBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTSSCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTT
T ss_pred             CCCcccCCCCCCeEEEEEeEEEcccCCCCceEEEEEecCCCCccEecCceEEEEcCCccccccCccCCcCEEEecCCCcC
Confidence            34556789999999999999999999888899999999998999999999999988643  3456789999999999976


Q ss_pred             CCCCCcEEEEEEEEeeEecC----CCceecCccchhhhcCCCCCEEEEEccCCCCcCCCCC
Q 043022          151 DFGDSKTVSLCVKRLVYTNE----NGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPRD  207 (361)
Q Consensus       151 ~~~~~~~l~~~V~~~~~~~~----~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~~~~~  207 (361)
                      ...+...++++|+++.|..+    .++.+.|.||+||+++++||.|.|.||.|.+|++|++
T Consensus        97 ~~~~~~~~~~~V~~v~~~~~~~~~~~r~~~GvcS~yL~~lk~Gd~V~i~gp~g~~F~lPed  157 (157)
T d1jb9a1          97 DNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPEE  157 (157)
T ss_dssp             TTTSSSEEEEEEECCCCBCTTTCCBCGGGSCHHHHHHHTCCTTCEEEEEEEECSTTCCCCS
T ss_pred             CCCCCCEEEEEEEEeeccccccccCCcccCceeehhhccCCCcCEEEEEecCCCcccCCCC
Confidence            44456789999998876542    3567899999999999999999999999999999853

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=8.8e-23  Score=166.90  Aligned_cols=126  Identities=13%  Similarity=0.274  Sum_probs=94.8

Q ss_pred             CCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCccc
Q 043022          207 DPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKN  286 (361)
Q Consensus       207 ~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~  286 (361)
                      ..++|+||||||||||||++|+++++..+.     .++++|+||+|+.+|++|.+++.++.++++ ++.++.+++++...
T Consensus         4 ~~d~plv~IagGtGiaP~~s~l~~l~~~~~-----~~~i~l~~~~r~~~d~~~~~el~~~~~~~~-~~~~~~~~~~~~~~   77 (143)
T d1gvha3           4 ADDTPVTLISAGVGQTPMLAMLDTLAKAGH-----TAQVNWFHAAENGDVHAFADEVKELGQSLP-RFTAHTWYRQPSEA   77 (143)
T ss_dssp             CTTCCEEEEEEGGGGHHHHHHHHHHHHHTC-----CSCEEEEEEESCTTTCCSHHHHHHHHHTSS-SEEEEEEESSCCHH
T ss_pred             CCCCCEEEEEchhhHHHHHHHHHHHHHcCC-----CceEEEEeecCCHHHHHHHHHHHHHHHhCC-ceEEEEEEeccCcc
Confidence            345899999999999999999999887653     368999999999999999999999999988 89999999876442


Q ss_pred             CCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHcc
Q 043022          287 EKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAAND  339 (361)
Q Consensus       287 ~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~  339 (361)
                      ......+....... .+.+...+..++..+|+|||++|++++.+.|.+.|...
T Consensus        78 ~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~iCGp~~m~~~v~~~L~~~G~~~  129 (143)
T d1gvha3          78 DRAKGQFDSEGLMD-LSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQ  129 (143)
T ss_dssp             HHHHTCCSEESSCC-GGGSSSCCCCTTCEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred             cccccceeeecccc-HHHHHhcccccCcEEEEeCcHHHHHHHHHHHHHcCCCH
Confidence            11011111111000 01111223336889999999999999999999998764

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.84  E-value=2.2e-21  Score=158.70  Aligned_cols=125  Identities=16%  Similarity=0.265  Sum_probs=91.7

Q ss_pred             CCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCc---
Q 043022          208 PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQ---  284 (361)
Q Consensus       208 ~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~---  284 (361)
                      ..+++|||||||||||+++|+++++......   .++++|+||+|+.+++++.+++.++....++.+.+.+..+...   
T Consensus        11 ~~k~lv~IAgGtGIaP~~s~l~~~~~~~~~~---~~~v~l~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (146)
T d2cnda2          11 NARRLAMICGGSGITPMYQIIQAVLRDQPED---HTEMHLVYANRTEDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPE   87 (146)
T ss_dssp             CCSEEEEEEEGGGHHHHHHHHHHHHHTTTTC---CCEEEEEEEESCGGGCTTHHHHHHHHHHCTTTEEEEEEESCCSCGG
T ss_pred             CCCEEEEEeceEEHhHHHHHHHHHHHhCCcc---CceEEEEEeecccccchhHHHHhhHHHhCCCceeEEEeeccccCcc
Confidence            3479999999999999999999987654222   3689999999999999999999999998885666665554332   


Q ss_pred             ccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHH-HHHHHHHHHHcc
Q 043022          285 KNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKG-IDDIMVSLAAND  339 (361)
Q Consensus       285 ~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~-v~~~L~~~g~~~  339 (361)
                      ..|.+..+++...+   .++..+... ++..+|+|||++|+++ +++.|.++|.+.
T Consensus        88 ~~~~~~~g~~~~~~---l~~~~~~~~-~~~~vyiCGp~~m~~~av~~~L~~~G~~~  139 (146)
T d2cnda2          88 EGWKYSVGFVTEAV---LREHVPEGG-DDTLALACGPPPMIQFAISPNLEKMKYDM  139 (146)
T ss_dssp             GCCCSEESSCCHHH---HHHHSCCCS-SSEEEEEECCHHHHHTTTHHHHHTTTCCH
T ss_pred             cccccccCccchHH---HHHhcccCC-CCcEEEEECCHHHHHHHHHHHHHHcCCCH
Confidence            33444444444322   222222222 4778999999999995 788999887653

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.80  E-value=2.6e-20  Score=147.35  Aligned_cols=110  Identities=15%  Similarity=0.245  Sum_probs=81.6

Q ss_pred             cCCCCCCCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEec
Q 043022          202 MLMPRDPNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVS  281 (361)
Q Consensus       202 ~~~~~~~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s  281 (361)
                      |.++ +..+++||||||||||||++|++++....      ..+++|+|++|+.++++|.++++++....  ++.+....+
T Consensus         2 F~l~-~~~~~~v~IagGtGiaP~~s~~~~l~~~~------~~~~~l~~~~r~~~~~~~~~~l~~~~~~~--~~~~~~~~~   72 (120)
T d2piaa2           2 FPLD-KRAKSFILVAGGIGITPMLSMARQLRAEG------LRSFRLYYLTRDPEGTAFFDELTSDEWRS--DVKIHHDHG   72 (120)
T ss_dssp             SCCC-TTCSEEEEEEEGGGHHHHHHHHHHHHHHC------SSEEEEEEEESCGGGCTTHHHHHSTTTTT--TEEEEECTT
T ss_pred             CCCC-CCCCCEEEEEecccHHHHHHHHHHHHHhc------CCCeEEEEeeCCHHHhhhhHHHHHHhhCC--CeEEeeecC
Confidence            4555 35689999999999999999999987654      26899999999999999999999997653  666555444


Q ss_pred             CCcccCCCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHH
Q 043022          282 REQKNEKGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVS  334 (361)
Q Consensus       282 ~~~~~~~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~  334 (361)
                      ++.     ....+..        +..... ++..+|+|||++|++++++.+..
T Consensus        73 ~~~-----~~~~~~~--------~~~~~~-~~~~~y~CGp~~mi~~v~~~~~~  111 (120)
T d2piaa2          73 DPT-----KAFDFWS--------VFEKSK-PAQHVYCCGPQALMDTVRDMTGH  111 (120)
T ss_dssp             CTT-----SCCCHHH--------HHSSCC-TTEEEEEESCHHHHHHHHHHTTT
T ss_pred             CCc-----ccccHHH--------HhccCC-CcCEEEEeCCHHHHHHHHHHHcC
Confidence            332     1111111        112222 58999999999999999997754

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.79  E-value=2.2e-20  Score=154.88  Aligned_cols=125  Identities=18%  Similarity=0.211  Sum_probs=91.3

Q ss_pred             CCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCC-------ceEEEEEec
Q 043022          209 NATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPE-------NFRLDFAVS  281 (361)
Q Consensus       209 ~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~-------~~~~~~~~s  281 (361)
                      .+++||||||||||||++|+++++....     .++++++||+|+.++++|.+++..+....+.       .+.+....+
T Consensus         7 ~~~lvlIagGtGIaP~~sil~~~~~~~~-----~~~~~l~~g~r~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~   81 (158)
T d1a8pa2           7 GKHLYMLSTGTGLAPFMSLIQDPEVYER-----FEKVVLIHGVRQVNELAYQQFITEHLPQSEYFGEAVKEKLIYYPTVT   81 (158)
T ss_dssp             CSEEEEEEEGGGGHHHHHHTTCHHHHHH-----CSEEEEEEEESSGGGCTTHHHHHTTGGGCTTTHHHHHHHEEEEEEES
T ss_pred             CCCEEEEEchhhHHHHHHHHHHHHHhCC-----CCceeeeeccccHHHHhhHHHHHHHHhhhhhhhhccccceEEEEecc
Confidence            4799999999999999999998765542     3789999999999999999999887665432       356666667


Q ss_pred             CCcccCCCCeeE--ecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHHHccC
Q 043022          282 REQKNEKGEKMY--IQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLAANDG  340 (361)
Q Consensus       282 ~~~~~~~g~~~~--v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~  340 (361)
                      +....+.+...+  ..+.+.+..  .......++..+|+|||++|+++|.++|.++|.+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~yiCGp~~m~~~v~~~L~~~G~~~~  140 (158)
T d1a8pa2          82 RESFHNQGRLTDLMRSGKLFEDI--GLPPINPQDDRAMICGSPSMLDESCEVLDGFGLKIS  140 (158)
T ss_dssp             SSCCSSBSCHHHHHHSSHHHHHH--TCCCCCTTTEEEEEEECHHHHHHHHHHHHHTTCCBC
T ss_pred             cccccccccccchhccchhhhhh--hccccCcccceEEEECCHHHHHHHHHHHHHcCCCcc
Confidence            665544332221  222222211  111222357899999999999999999999998765

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=2.5e-19  Score=136.53  Aligned_cols=97  Identities=19%  Similarity=0.218  Sum_probs=83.6

Q ss_pred             CCeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEE
Q 043022           83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCV  162 (361)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V  162 (361)
                      +++.++|+++++++++     ++.|+++.| .++|+||||+.|.++..+    ....|+|||+|.|.     ++.++|+|
T Consensus         2 ~w~~a~V~~v~~~t~~-----v~~l~~~~p-~~~f~pGQ~v~l~~~~~g----~~~~R~YSi~s~p~-----~~~~~~~v   66 (99)
T d1fdra1           2 DWVTGKVTKVQNWTDA-----LFSLTVHAP-VLPFTAGQFTKLGLEIDG----ERVQRAYSYVNSPD-----NPDLEFYL   66 (99)
T ss_dssp             CEEEEEEEEEEECSSS-----EEEEEEECC-CCCCCTTCEEEEEECC-------CEEEEEECCSCTT-----CSSEEEEE
T ss_pred             CcEEEEEEEEEEcCCC-----EEEEEEcCC-CCCCCCCcEEEeccCCCC----CcEEEEEccCCCCC-----CceeEEEE
Confidence            3678999999999999     999999976 578999999999987543    22589999999984     57899999


Q ss_pred             EEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcC
Q 043022          163 KRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEML  203 (361)
Q Consensus       163 ~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~  203 (361)
                      ++++         +|.+|++|+++++||+|.|.||.|++|.
T Consensus        67 k~~~---------~G~~S~~l~~lk~GD~v~v~gP~~g~F~   98 (99)
T d1fdra1          67 VTVP---------DGKLSPRLAALKPGDEVQVVSEAAGFFV   98 (99)
T ss_dssp             ECCT---------TCSSHHHHHTCCTTCEEEEESSCBCCCS
T ss_pred             EEec---------CcHHHHHHhhCCCCCEEEECcCCCCEEE
Confidence            9987         8999999999999999999998877765

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.2e-19  Score=137.89  Aligned_cols=95  Identities=16%  Similarity=0.240  Sum_probs=81.6

Q ss_pred             CeeEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022           84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK  163 (361)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~  163 (361)
                      .+.|+|.++++++++     +++|+|+.+..++|+||||+.|.+++.       ..|+|||+|.|.    +++.++|+||
T Consensus         2 tl~~~V~~i~~lt~~-----v~~~~l~~~~~~~f~~GQ~v~l~~~~~-------~~r~ySias~p~----~~~~l~l~ir   65 (97)
T d1qfja1           2 TLSCKVTSVEAITDT-----VYRVRIVPDAAFSFRAGQYLMVVMDER-------DKRPFSMASTPD----EKGFIELHIG   65 (97)
T ss_dssp             EEEEEEEEEEESSSS-----CEEEEEEESSCCCCCTTCEEEEESSSS-------CEEEEECCSCTT----STTCEEEEEC
T ss_pred             cEEEEEEEEEEcCCC-----EEEEEEeCCccCccCCCCEEEEEEcCC-------CcEEEEEEEcCC----CCcEEEEEEe
Confidence            478999999999999     999999999899999999999998753       479999999997    6789999999


Q ss_pred             EeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCcC
Q 043022          164 RLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEML  203 (361)
Q Consensus       164 ~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~~  203 (361)
                      +.+         +|.+|.+|++ +++||.|.|.||+|.+|+
T Consensus        66 ~~~---------~g~~s~~l~~~l~~G~~v~v~gP~G~~~l   97 (97)
T d1qfja1          66 ASE---------INLYAKAVMDRILKDHQIVVDIPHGEAWL   97 (97)
T ss_dssp             ---------------CCHHHHHHHHHHSEEEEEEEECSCCC
T ss_pred             Ecc---------CCchhHhHhhcCCCCCEEEEeccCCceEC
Confidence            987         8999999987 999999999999999764

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=99.76  E-value=1.5e-18  Score=132.57  Aligned_cols=94  Identities=21%  Similarity=0.377  Sum_probs=83.6

Q ss_pred             CeeEEEEeEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022           84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL  160 (361)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~  160 (361)
                      .+.++|+++++++++     +++++|+.+..   +.|+||||+.|.+++.+      ..|+|||+|.|     .++.+++
T Consensus         3 ~~~~~v~~v~~lt~~-----v~~~~l~~~~~~~~~~f~pGQ~v~l~i~g~~------~~r~ys~~~~~-----~~~~~~~   66 (100)
T d1krha1           3 HFEGTLARVENLSDS-----TITFDIQLDDGQPDIHFLAGQYVNVTLPGTT------ETRSYSFSSQP-----GNRLTGF   66 (100)
T ss_dssp             EEEEEEEEEEESSSS-----EEEEEEEECTTCCCCCCCTTCEEEEECTTSS------CEEEEECCSCT-----TCSEEEE
T ss_pred             EEEEEEEEEEEcCCC-----eEEEEEEcCCCCcCCCCCCCEEEEEEECCcc------eeEEeeccCCC-----ccCceEE
Confidence            578999999999999     99999998753   67999999999987643      58999999998     4578999


Q ss_pred             EEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCc
Q 043022          161 CVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEM  202 (361)
Q Consensus       161 ~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~  202 (361)
                      +|++++         +|.+|+||++ +++||+|.+.||+|+||
T Consensus        67 ~i~~~~---------~G~~s~~l~~~l~~Gd~v~v~gP~G~Ff  100 (100)
T d1krha1          67 VVRNVP---------QGKMSEYLSVQAKAGDKMSFTGPFGSFY  100 (100)
T ss_dssp             EEECCT---------TCHHHHHHHTTCCTTCEEEEEEEECSCS
T ss_pred             EEEEee---------CCchhhhhhccCCCCCEEEEeccccccC
Confidence            999886         8999999986 99999999999999875

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Ferredoxin reductase (flavodoxin reductase) N-terminal domain
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.74  E-value=3.8e-18  Score=129.80  Aligned_cols=93  Identities=19%  Similarity=0.268  Sum_probs=81.9

Q ss_pred             eEEEEeEeeecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEe
Q 043022           86 IGRCLLNTKITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRL  165 (361)
Q Consensus        86 ~~~v~~~~~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~  165 (361)
                      ..+|+++.+++++     ++.|++..++.++|+||||+.|.++..+    ....|+|||+|+|     .++.++++|+++
T Consensus         5 ~~kV~~v~~~t~~-----~~~~~l~~~~~~~f~aGQ~~~l~~~~~g----~~~~R~ySi~S~p-----~~~~~~~~i~~~   70 (99)
T d1a8pa1           5 VERVLSVHHWNDT-----LFSFKTTRNPSLRFENGQFVMIGLEVDG----RPLMRAYSIASPN-----YEEHLEFFSIKV   70 (99)
T ss_dssp             EEEEEEEEEEETT-----EEEEEEECCTTCCCCTTCEEEEEEEETT----EEEEEEEECCSCT-----TSSEEEEEEECC
T ss_pred             eEEEEEEEecCCC-----EEEEEecCCCCCccCCCcEEEEeccCCC----ceeEeeccccCCC-----CCCcEEEEEEEe
Confidence            3579999999999     9999999999999999999999987543    2257999999998     457899999987


Q ss_pred             eEecCCCceecCccchhhhcCCCCCEEEEE-ccCCCC
Q 043022          166 VYTNENGEIVKGVCSNFLCDLKPGAEVKIT-GPVGKE  201 (361)
Q Consensus       166 ~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~-gP~G~~  201 (361)
                      +         +|.+|+||+++++||+|.|. ||+|.+
T Consensus        71 ~---------~G~~S~~L~~l~~Gd~v~v~~gP~G~l   98 (99)
T d1a8pa1          71 Q---------NGPLTSRLQHLKEGDELMVSRKPTGTL   98 (99)
T ss_dssp             S---------SCSSHHHHTTCCTTCEEEEESCCBCSC
T ss_pred             C---------CCChhHHHHhCCCCCEEEECCCCceeE
Confidence            6         89999999999999999996 999963

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.73  E-value=2.5e-18  Score=133.33  Aligned_cols=97  Identities=20%  Similarity=0.346  Sum_probs=85.6

Q ss_pred             ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC------ccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCC
Q 043022           79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG------EVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDF  152 (361)
Q Consensus        79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~------~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~  152 (361)
                      +-....+.++|++++.++++     +++|+|+.|.      .+.|+||||+.|.+++.+      ..|+|||+|.|.   
T Consensus         5 ~~~~~~~~a~V~~~~~lt~d-----i~~l~l~~p~~~~~~~~~~f~pGQ~v~l~~~g~~------~~R~ySias~p~---   70 (109)
T d1tvca1           5 FGEVGSFEAEVVGLNWVSSN-----TVQFLLQKRPDECGNRGVKFEPGQFMDLTIPGTD------VSRSYSPANLPN---   70 (109)
T ss_dssp             SCCSSEEEEEBCCCEEEETT-----EEEEEECSSTTSSSSSCCSCCSCCEEEECTTSCS------SSEEECCBCCSS---
T ss_pred             cccceeEEEEEEEEEEeCCC-----eEEEEEECCCcccccccccCCCCcEEEEEECCcc------ccccceeccCCc---
Confidence            34456889999999999999     9999999864      478999999999987643      589999999997   


Q ss_pred             CCCcEEEEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCC
Q 043022          153 GDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVG  199 (361)
Q Consensus       153 ~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G  199 (361)
                       +.+.++|+|++++         +|.+|+||++ +++||+|.|.||+|
T Consensus        71 -~~~~~~~~i~~~~---------~G~~S~~l~~~l~~Gd~v~i~gP~G  108 (109)
T d1tvca1          71 -PEGRLEFLIRVLP---------EGRFSDYLRNDARVGQVLSVKGPLG  108 (109)
T ss_dssp             -SSCCEEEEECCCT---------TSSSHHHHHHHSSSSSEEEEEEEEC
T ss_pred             -CCceeEEEEEEeC---------CchHHHHHHhhCCCCCEEEEeCCcc
Confidence             6789999999987         8999999976 99999999999998

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.70  E-value=3.3e-17  Score=125.19  Aligned_cols=96  Identities=19%  Similarity=0.156  Sum_probs=84.1

Q ss_pred             eeEEEEeEeeecCCCCCCceEEEEeeCCCc-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEE
Q 043022           85 YIGRCLLNTKITGDDAPGETWHMVFSTEGE-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVK  163 (361)
Q Consensus        85 ~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~  163 (361)
                      -.++|++++.++++     +++|+|+.+.. ..++||||+.|.+++..    ....|+|||++.+.    +++.++|.++
T Consensus         5 ~~~~V~~~~~~~~~-----i~~l~l~~~~~~~~~~pGQfv~l~~~~~~----~~~~R~~Si~~~~~----~~~~i~~~i~   71 (101)
T d1ep3b1           5 EMMTVVSQREVAYN-----IFEMVLKGTLVDEMDLPGQFLHLAVPNGA----MLLRRPISISSWDK----RAKTCTILYR   71 (101)
T ss_dssp             EEEEEEEEEEEETT-----EEEEEEESGGGGGCCSTTCEEEECCSCTT----CCSCEEEECCEEET----TTTEEEEEEE
T ss_pred             eeEEEEEEEEecCC-----EEEEEEECCChhhccCCCceEEEEccCCc----cEeeccceeeeCCC----CCcEEEEEEe
Confidence            45899999999999     99999998763 45999999999987543    33589999999987    7899999999


Q ss_pred             EeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCc
Q 043022          164 RLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEM  202 (361)
Q Consensus       164 ~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~  202 (361)
                      ..+         .|.+|.+|+++++||+|.|.||+|++|
T Consensus        72 ~~~---------~g~~t~~l~~l~~Gd~v~v~GP~G~~F  101 (101)
T d1ep3b1          72 IGD---------ETTGTYKLSKLESGAKVDVMGPLGNGF  101 (101)
T ss_dssp             CCC---------TTSHHHHHHTCCTTCEEEEEEEESBCC
T ss_pred             ecC---------cchhhHHHHhCCCCCEEEEecccCCCC
Confidence            876         788999999999999999999999876

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.68  E-value=1.1e-16  Score=122.51  Aligned_cols=92  Identities=21%  Similarity=0.307  Sum_probs=80.6

Q ss_pred             CCeeEEEEeEeeecCCCCCCceEEEEeeCCC--cc-ccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEE
Q 043022           83 TPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EV-PYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVS  159 (361)
Q Consensus        83 ~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l-~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~  159 (361)
                      ..+.++|++++.++++     ++.|+|+.+.  .+ .|+|||||.|.+++.       ..|+|||+|.|.    +.+.++
T Consensus         7 ~~~~~~V~~~~~~t~d-----i~~~~l~~~~g~~lp~f~pGQ~v~v~~~~~-------~~R~YSl~s~p~----~~~~~~   70 (103)
T d2piaa1           7 GFLRLKIASKEKIARD-----IWSFELTDPQGAPLPPFEAGANLTVAVPNG-------SRRTYSLCNDSQ----ERNRYV   70 (103)
T ss_dssp             TCEEEEEEEEEEEETT-----EEEEEEECTTCCCCCCCCTTCEEEEECTTS-------CEEEEECCSCTT----CCSEEE
T ss_pred             CeEEEEEEEEEEcCCC-----eEEEEEECCCCCcCCCCCCCceEEEEEecc-------eeEEEEEecCCC----CCCEEE
Confidence            3688999999999999     9999999874  46 599999999998642       479999999997    678999


Q ss_pred             EEEEEeeEecCCCceecCc-cchhhhc-CCCCCEEEEEccCC
Q 043022          160 LCVKRLVYTNENGEIVKGV-CSNFLCD-LKPGAEVKITGPVG  199 (361)
Q Consensus       160 ~~V~~~~~~~~~~~~~~G~-~S~~L~~-l~~G~~v~i~gP~G  199 (361)
                      |+||+++         +|. +|+||++ +++||.|.|+||.+
T Consensus        71 i~Vk~~~---------~g~~~S~~l~~~l~~Gd~v~v~~Prn  103 (103)
T d2piaa1          71 IAVKRDS---------NGRGGSISFIDDTSEGDAVEVSLPRN  103 (103)
T ss_dssp             EEEECCT---------TSCSHHHHHHHSCCTTCEEEECCCBC
T ss_pred             EEEEEEC---------CCccchHHHHhcCCCCCEEEEeCCcC
Confidence            9999986         776 4999985 99999999999964

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Nitrate reductase core domain
species: Corn (Zea mays) [TaxId: 4577]

Probab=99.68  E-value=6.2e-17  Score=126.48  Aligned_cols=107  Identities=20%  Similarity=0.197  Sum_probs=87.6

Q ss_pred             CeeEEEEeEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022           84 PYIGRCLLNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL  160 (361)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~  160 (361)
                      .+.|+|++++.+++|     ++.|+|+.+..   +.|.||||+.|.++..+    ....|+||++|.|.    +.+.++|
T Consensus         2 k~~~klv~~~~it~d-----~~~~~f~~p~~~~~~~~~~Gq~v~v~~~~~~----~~~~R~Ys~~s~~~----~~~~~~~   68 (114)
T d2cnda1           2 RIHCRLVAKKELSRD-----VRLFRFSLPSPDQVLGLPIGKHIFVCATIEG----KLCMRAYTPTSMVD----EIGHFDL   68 (114)
T ss_dssp             CEEEEEEEEEEEETT-----EEEEEEECSSTTCCCCCCTTCEEEEEEEETT----EEEEEEECCCSCTT----CCSEEEE
T ss_pred             cEEEEEEEEEEcCCC-----eEEEEEECCCcccccCccceEEEEEEeeccc----ceEEeeeccCCCCC----CCCEEEE
Confidence            578999999999999     99999998653   55899999999976543    22589999999997    6789999


Q ss_pred             EEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcC
Q 043022          161 CVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEML  203 (361)
Q Consensus       161 ~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~  203 (361)
                      +||..+.........+|.+|.+|+++++||+|.|+||+|+|.+
T Consensus        69 ~ik~~~~~~~~~~~~gG~~s~~l~~l~~Gd~v~i~gP~G~F~y  111 (114)
T d2cnda1          69 LVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEY  111 (114)
T ss_dssp             EEECCCSSCBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEC
T ss_pred             EEEeccCCCccccccCchhHHHHhhCCCCCEEEEECCceeeEE
Confidence            9998652212222346999999999999999999999999654

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.67  E-value=5.2e-17  Score=134.69  Aligned_cols=106  Identities=20%  Similarity=0.344  Sum_probs=80.2

Q ss_pred             CCCcEEEEecCCchhhHHHHHHHHHhhcccccccCCeEEEEEeccCCcccccHHHHHHHHHhCCCceEEEEEecCCcccC
Q 043022          208 PNATVIMLATGTGIAPFRGFLWKMFFEKHEDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPENFRLDFAVSREQKNE  287 (361)
Q Consensus       208 ~~~~iv~Ia~GtGiaP~~~~l~~~~~~~~~~~~~~~~i~L~~g~r~~~d~~~~~el~~l~~~~~~~~~~~~~~s~~~~~~  287 (361)
                      ..++++|||||||||||++|++++.+.+       .+++|+|++|+.++++|.+||+++.     +..++......   +
T Consensus         7 ~~~kvllIAgG~GitPl~sm~~~l~~~~-------~~v~l~~g~r~~~~~~~~~el~~~~-----~~~~~~~~~~~---~   71 (160)
T d1ep3b2           7 STDKILIIGGGIGVPPLYELAKQLEKTG-------CQMTILLGFASENVKILENEFSNLK-----NVTLKIATDDG---S   71 (160)
T ss_dssp             TTSEEEEEEEGGGSHHHHHHHHHHHHHT-------CEEEEEEEESSGGGCCCHHHHHTST-----TEEEEEEETTC---S
T ss_pred             CCCEEEEEEeeeeHHHHHHHHHHHHhcc-------CceEEEEecCCHHHHHHHHHHHHhh-----CCCccccccCc---c
Confidence            4468999999999999999999877543       6899999999999999999998774     33344433322   3


Q ss_pred             CCCeeEecchHHHhHHHHHHHhccCCeEEEEECCcchHHHHHHHHHHHH
Q 043022          288 KGEKMYIQTRMAEYANELWELLKKDNTYVYMCGLRGMEKGIDDIMVSLA  336 (361)
Q Consensus       288 ~g~~~~v~~~l~~~~~~~~~~l~~~~~~vyvCGp~~m~~~v~~~L~~~g  336 (361)
                      .+.++++.+.+.+        .......+|+|||+.|++++.+.+.+.+
T Consensus        72 ~~~~g~v~~~~~~--------~~~~~~~vy~CGP~~m~~~v~~~~~~~g  112 (160)
T d1ep3b2          72 YGTKGHVGMLMNE--------IDFEVDALYTCGAPAMLKAVAKKYDQLE  112 (160)
T ss_dssp             SSEESCHHHHHHH--------CCSCCSEEEEESCHHHHHHHHHHTTTCS
T ss_pred             ccccccHHHHHHh--------hccccceeeeeccchHHHHHHHHHHhcC
Confidence            3345555543322        3335789999999999999999888776

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.4e-16  Score=122.95  Aligned_cols=98  Identities=24%  Similarity=0.298  Sum_probs=82.1

Q ss_pred             CeeEEEEeEeeecCCCCCCceEEEEeeCCC--c-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022           84 PYIGRCLLNTKITGDDAPGETWHMVFSTEG--E-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL  160 (361)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~  160 (361)
                      ....+|++++.++++     +++|+|+.+.  . ..|+||||+.|.++..+..  ....|+||++|.+     +++.++|
T Consensus         6 ~~~~~v~~~~~~t~~-----~~~~~l~~~d~~~~~~~~pGQ~v~l~~~~~~~~--~~~~r~~s~ss~~-----~~~~~~i   73 (107)
T d1gvha2           6 TRDFRIVAKTPRSAL-----ITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFP--HQEIRQYSLTRKP-----DGKGYRI   73 (107)
T ss_dssp             EEEEEEEEEEECSSS-----EEEEEEEETTCCCCCCCCTTCEEEEEECCTTCS--SCEEEEEECCSCC-----CSSCEEE
T ss_pred             CEEEEEEEEEEeCCC-----eEEEEEEcCCcCcccCCCCCCEEEEEeeccccC--ceEEeeccccCCC-----CCCceEE
Confidence            346789999999999     9999999653  3 4699999999998643321  2257999999988     5678999


Q ss_pred             EEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCc
Q 043022          161 CVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEM  202 (361)
Q Consensus       161 ~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~  202 (361)
                      +|++++         +|.+|+||++ +++||+|.++||+|.||
T Consensus        74 ~vk~~~---------~G~~S~~l~~~l~~Gd~v~v~gP~G~Ff  107 (107)
T d1gvha2          74 AVKREE---------GGQVSNWLHNHANVGDVVKLVAPAGDFF  107 (107)
T ss_dssp             EEECCT---------TCHHHHHHHHTCCTTCEEEEEEEECSCC
T ss_pred             EEEEcC---------CcchhHHHHhcCCCCCEEEEeCccccCC
Confidence            999987         8999999985 99999999999999975

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: Flavohemoglobin, central domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.66  E-value=1.1e-16  Score=124.32  Aligned_cols=103  Identities=22%  Similarity=0.252  Sum_probs=82.3

Q ss_pred             CeeEEEEeEeeecCCCCCCceEEEEeeCCC--c-cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEE
Q 043022           84 PYIGRCLLNTKITGDDAPGETWHMVFSTEG--E-VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSL  160 (361)
Q Consensus        84 ~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~-l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~  160 (361)
                      .-.++|++++.++++     +++|+|+.+.  . +.|.||||+.|.++..+. + ....|+|||+|.|     +++.++|
T Consensus         4 ~r~~~V~~~~~~t~d-----v~~~~l~~~~~~~~~~~~~GQ~v~l~~~~~~~-~-~~~~R~ySi~s~p-----~~~~~~~   71 (111)
T d1cqxa2           4 WRTFVIREKRPESDV-----ITSFILEPADGGPVVNFEPGQYTSVAIDVPAL-G-LQQIRQYSLSDMP-----NGRTYRI   71 (111)
T ss_dssp             CEEEEEEEEEECSSS-----EEEEEEEETTCCCCCCCCTTCEEEEEEEETTT-T-EEEEEEEECCSCC-----CSSCEEE
T ss_pred             ceEEEEEEEEEeCCC-----cEEEEEEeCCcCcccCCCCCCEEEEEeecCCC-c-ceeeeeccccCCc-----cCCCeEE
Confidence            346899999999999     9999999754  3 579999999999764321 1 2368999999998     4578999


Q ss_pred             EEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEccCCCCc
Q 043022          161 CVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITGPVGKEM  202 (361)
Q Consensus       161 ~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~gP~G~~~  202 (361)
                      +|+++.    ......|.+|+||++ +++||.|.++||+|+|+
T Consensus        72 ~v~~~~----~~~~~~G~~S~~l~~~l~~Gd~v~v~gP~G~F~  110 (111)
T d1cqxa2          72 SVKREG----GGPQPPGYVSNLLHDHVNVGDQVKLAAPYGSFH  110 (111)
T ss_dssp             EEECCC----BTTBCCCHHHHHHHHHCCTTCEEEECCCBCSCS
T ss_pred             EEEEec----CCCcccchhHHHHHhcCCCCCEEEEEccCeEeE
Confidence            999753    112236899999986 99999999999999865

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: Ferredoxin reductase FAD-binding domain-like
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=120.18  Aligned_cols=111  Identities=23%  Similarity=0.234  Sum_probs=87.2

Q ss_pred             cCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCCc---cccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCc
Q 043022           80 KPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEGE---VPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSK  156 (361)
Q Consensus        80 ~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~~---l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~  156 (361)
                      .|...++++|++++.++++     ++.|+|+.+..   +.|.||||+.+.++..+    ....|+||++|.+.    +.+
T Consensus         8 ~P~~~~~~~v~~~~~it~d-----~~~f~f~~p~~~~~~~~~~Gq~v~v~~~~~~----~~~~R~Ys~~s~~~----~~g   74 (124)
T d1umka1           8 SPDIKYPLRLIDREIISHD-----TRRFRFALPSPQHILGLPVGQHIYLSARIDG----NLVVRPYTPISSDD----DKG   74 (124)
T ss_dssp             CTTCCEEEEEEEEEECSSS-----EEEEEEECSSTTCBCCCCTTCEEEEEEEETT----EEEEEEECCSSCTT----CCS
T ss_pred             CCCcCEEEEEEEEEEeCCC-----eEEEEEEcCCcccccccceeeEEEEEecccc----eeEEEeeccCCccc----CCc
Confidence            4777899999999999999     99999998653   46999999999975432    22579999999997    678


Q ss_pred             EEEEEEEEeeEecCCCceecCccchhhhcCCCCCEEEEEccCCCCcC
Q 043022          157 TVSLCVKRLVYTNENGEIVKGVCSNFLCDLKPGAEVKITGPVGKEML  203 (361)
Q Consensus       157 ~l~~~V~~~~~~~~~~~~~~G~~S~~L~~l~~G~~v~i~gP~G~~~~  203 (361)
                      .++|+||............+|..|.+|++|++||.|.|+||+|.|.+
T Consensus        75 ~~~~~vk~~~~~~~~~~~~Gg~~s~~l~~l~~GD~v~v~gP~G~F~y  121 (124)
T d1umka1          75 FVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVY  121 (124)
T ss_dssp             EEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEECSEEE
T ss_pred             eEEEEEEecccccccccCCCcchHHHHhcCCCCCEEEEECCeeeeEE
Confidence            99999986421000011225778888889999999999999998654

>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=3.7e-15  Score=133.96  Aligned_cols=143  Identities=20%  Similarity=0.247  Sum_probs=96.3

Q ss_pred             cccceecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhh--hcccccccccc-cccccCCCCeeEEEEeEe
Q 043022           19 PTRTSIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVE--KESKKMEEGVI-VNKFKPKTPYIGRCLLNT   93 (361)
Q Consensus        19 ~~~~~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~   93 (361)
                      ....+.|+|.|||++++|++|+||++  +++++..|++++++...+..  .+.....++.. ...|...  -.-.++++-
T Consensus       115 ~~~~~~p~p~~~tl~~lL~~~~Di~~~p~k~~l~~La~~a~~~~~k~~L~~l~~~~~~~~~~y~~~~~~--~~~~ildlL  192 (279)
T d1ja1a1         115 ESNKKHPFPCPTTYRTALTYYLDITNPPRTNVLYELAQYASEPSEQEHLHKMASSSGEGKELYLSWVVE--ARRHILAIL  192 (279)
T ss_dssp             TCSCCCSSSSSEEHHHHHHHTBCCSSCCCHHHHHHHGGGBCSHHHHHHHHGGGCSSSHHHHHHHHHTTT--TTCCHHHHH
T ss_pred             ccccccCCCCchhHHHHHHhhccccCCCcHHHHHHHHHHcCChHHHHHHHHHhcCcHHHHHHHHHHHHh--cCCCHHHHH
Confidence            34457789999999999999999999  88899999999999887763  23222211110 0011110  000111111


Q ss_pred             eecCCCCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecCCCc
Q 043022           94 KITGDDAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNENGE  173 (361)
Q Consensus        94 ~~~~~~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~~~~  173 (361)
                      ..-+                .......+++.+..        ++++|+|||||+|..   +++.++|+|..+.|+...++
T Consensus       193 ~~fp----------------s~~~pl~~ll~~lp--------~L~PR~YSISSSp~~---~p~~v~ltv~vV~y~~~~g~  245 (279)
T d1ja1a1         193 QDYP----------------SLRPPIDHLCELLP--------RLQARYYAIASSSKV---HPNSVHICAVAVEYEAKSGR  245 (279)
T ss_dssp             HHST----------------TBCCCHHHHHHHSC--------BCCCEEEECCSCTTT---CTTEEEEEEECCEEECTTSS
T ss_pred             hhCc----------------ccCCCHHHHHHhCc--------cCCCceeeEecCccc---CCCEEEEEEEEEEeecCCCC
Confidence            1111                11112223333332        679999999999976   79999999999999988889


Q ss_pred             eecCccchhhhcCCCCC
Q 043022          174 IVKGVCSNFLCDLKPGA  190 (361)
Q Consensus       174 ~~~G~~S~~L~~l~~G~  190 (361)
                      .+.|.||+||.++.+|+
T Consensus       246 ~r~GvcS~~L~~l~~~~  262 (279)
T d1ja1a1         246 VNKGVATSWLRAKEPAG  262 (279)
T ss_dssp             EEECHHHHHHHHCCCCS
T ss_pred             cccccchHHHhhcCCCC
Confidence            99999999999987766

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=3.5e-12  Score=110.62  Aligned_cols=115  Identities=27%  Similarity=0.423  Sum_probs=98.1

Q ss_pred             cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCCCC------------------------
Q 043022           78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGVDK------------------------  132 (361)
Q Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~~~------------------------  132 (361)
                      .|....++.|+|+.+.+++...+..++++++|+.+. .+.|+||+++.|.+.+...                        
T Consensus         5 p~~~~~p~~a~v~~n~~Lt~~~~~~~~~hleldl~~~~~~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~~~~~~~~~~~~   84 (221)
T d1ddga1           5 PYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTL   84 (221)
T ss_dssp             CCBTTBCEEEEEEEEEECSCTTCSSEEEEEEEECTTSCCCCCTTCEEEECCCCCHHHHHHHHHHTTCCSCSEEEETTEEE
T ss_pred             CCCCCCCEEEEEEeEEEecCCCCCceEEEEEEEcCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCcccccccCCCcc
Confidence            466778999999999999998888899999999875 7899999999999864310                        


Q ss_pred             -------------------------------------C--------------------------------CCCCCceecc
Q 043022          133 -------------------------------------N--------------------------------AKPHKLRLYS  143 (361)
Q Consensus       133 -------------------------------------~--------------------------------~~~~~~R~yS  143 (361)
                                                           +                                -.++++|+||
T Consensus        85 ~l~~~l~~~~di~~~~~~~l~~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~~~~~pl~~ll~~lp~l~PR~YS  164 (221)
T d1ddga1          85 PLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYS  164 (221)
T ss_dssp             EHHHHHHHHBCCSCCCHHHHHHHHHHHTCTTTGGGTTCTHHHHHHHHHSCHHHHHHHSCCCCCHHHHHHHSCBCCCEEEE
T ss_pred             cHHHHhcccccccCCcHHHHHHHHHhcCCHHHhhccCCHHHHHHHhcccchhHHhhcccCCCCHHHHHHhhhccCceeee
Confidence                                                 0                                0567899999


Q ss_pred             cccCCCCCCCCCcEEEEEEEEeeEecCCCceecCccchhhhc-CCCCCEEEEEc
Q 043022          144 IASSALGDFGDSKTVSLCVKRLVYTNENGEIVKGVCSNFLCD-LKPGAEVKITG  196 (361)
Q Consensus       144 ias~p~~~~~~~~~l~~~V~~~~~~~~~~~~~~G~~S~~L~~-l~~G~~v~i~g  196 (361)
                      |||+|..   +++.++|+|..+.|++ .++.+.|.||+||.+ +++|++|.+..
T Consensus       165 IsSSp~~---~p~~i~ltv~vv~~~~-~~~~r~GvcS~~L~~~l~~g~~V~v~i  214 (221)
T d1ddga1         165 IASSQAE---VENEVHVTVGVVRYDV-EGRARAGGASSFLADRVEEEGEVRVFI  214 (221)
T ss_dssp             BCCCTTT---SCSEEEEEEEECEEEE-TTEEEECHHHHHHHHSCCSSCEEEEEE
T ss_pred             ecccccc---CCCeeeEEEEEEEeeC-CCCccceecHHHHHhhCCCCCEEEEEE
Confidence            9999976   7899999999999976 477899999999985 99999998864

>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=2.7e-15  Score=134.38  Aligned_cols=141  Identities=21%  Similarity=0.173  Sum_probs=95.2

Q ss_pred             eecCCCcccccccceeeeeeec--cceeEEEeeecccCccchhhhc--ccccccccccccccCCCCeeEEEEeEeeecCC
Q 043022           23 SIISPDRITFRKVPFYYKDVST--GGRVVSVRAQVTTEAPAKVEKE--SKKMEEGVIVNKFKPKTPYIGRCLLNTKITGD   98 (361)
Q Consensus        23 ~~p~p~~~t~~~~~~~y~di~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~   98 (361)
                      ..+++.|||++++|++|+||++  +++++..+++++.+.+.+...+  ..+.++ .....+.+.    .+++++-..-+ 
T Consensus       119 ~~~~~~p~tl~~~l~~~~Di~~~p~~~~l~~La~~~~~~~ek~~L~~l~~~~~~-~~~~~~~~~----~tlldvL~~fp-  192 (270)
T d1f20a1         119 DESRLPPCTIFQAFKYYLDITTPPTPLQLQQFASLATNEKEKQRLLVLSKGLQE-YEEWKWGKN----PTMVEVLEEFP-  192 (270)
T ss_dssp             ECCSSCSBCHHHHHHHTBCCSSCCCHHHHHHHHTTBCCHHHHHHHHHHTTCSHH-HHHHHHHHC----CCHHHHHHHST-
T ss_pred             ccCCCCCccHHHHHHhheecccCCCHHHHHHHHHHCCCHHHHHHHHhhcccHHH-HHHHHhccC----CcHHHHHHhcc-
Confidence            3466779999999999999999  8889999999999887776422  222211 000001110    01111111111 


Q ss_pred             CCCCceEEEEeeCCCccccCCCcEEEEecCCCCCCCCCCCceecccccCCCCCCCCCcEEEEEEEEeeEecC--CCceec
Q 043022           99 DAPGETWHMVFSTEGEVPYKEGQSIGVIADGVDKNAKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNE--NGEIVK  176 (361)
Q Consensus        99 ~~~~~~~~l~l~~~~~l~~~pGQ~v~l~~~~~~~~~~~~~~R~ySias~p~~~~~~~~~l~~~V~~~~~~~~--~~~~~~  176 (361)
                                     .......+++.+..        ++++|+|||||+|..   +++.++|+|..+.|++.  .++.+.
T Consensus       193 ---------------s~~~pl~~ll~~lp--------~L~PR~YSIsSSp~~---~p~~v~Ltv~vV~y~~~~~~g~~r~  246 (270)
T d1f20a1         193 ---------------SIQMPATLLLTQLS--------LLQPRYYSISSSPDM---YPDEVHLTVAIVSYHTRDGEGPVHH  246 (270)
T ss_dssp             ---------------TBCBCHHHHHHHSC--------BCCCEEEECCSCTTT---STTEEEEEEECCEEECGGGTSCEEE
T ss_pred             ---------------ccCCCHHHHHHhcc--------ccccceeEEecCccC---CCCEEEEEEEEEEEeccCCCCCeee
Confidence                           11122223333332        679999999999976   78999999999999874  456889


Q ss_pred             CccchhhhcCCCCCEEEEE
Q 043022          177 GVCSNFLCDLKPGAEVKIT  195 (361)
Q Consensus       177 G~~S~~L~~l~~G~~v~i~  195 (361)
                      |.||+||.++++|++|.+.
T Consensus       247 GvcS~~L~~l~~Gd~v~v~  265 (270)
T d1f20a1         247 GVCSSWLNRIQADDVVPCF  265 (270)
T ss_dssp             CHHHHHHTTCCTTCEEEEE
T ss_pred             eechHHHhcCCCCCEEEEE
Confidence            9999999999999998874

>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.90  E-value=0.052  Score=46.53  Aligned_cols=52  Identities=21%  Similarity=0.353  Sum_probs=45.7

Q ss_pred             ccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC--ccccCCCcEEEEecCCC
Q 043022           79 FKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG--EVPYKEGQSIGVIADGV  130 (361)
Q Consensus        79 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~--~l~~~pGQ~v~l~~~~~  130 (361)
                      +..+.++.|+|+.+..++...+..++++++|+..+  .+.|+||+++.|.+.+.
T Consensus        25 ~~~k~~~~a~v~~~~~L~~~~s~r~t~hield~~g~~~l~Y~~GD~l~V~P~N~   78 (270)
T d1f20a1          25 VHKKRVSAARLLSRQNLQSPKSSRSTIFVRLHTNGNQELQYQPGDHLGVFPGNH   78 (270)
T ss_dssp             HHTSCCEEEEEEEEEECSCTTCSSCEEEEEEECTTCGGGCCCTTCEEEECCCCC
T ss_pred             hccCCcEeeEEEEEEeccCCCCCccEEEEEEEcCCCCCCeEcCCCEEEEEeCCC
Confidence            44567999999999999998888899999999964  58999999999998764

>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin synthase domain-like
family: NADPH-cytochrome p450 reductase FAD-binding domain-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.31  E-value=0.077  Score=45.61  Aligned_cols=52  Identities=17%  Similarity=0.405  Sum_probs=45.1

Q ss_pred             cccCCCCeeEEEEeEeeecCCCCCCceEEEEeeCCC-ccccCCCcEEEEecCCC
Q 043022           78 KFKPKTPYIGRCLLNTKITGDDAPGETWHMVFSTEG-EVPYKEGQSIGVIADGV  130 (361)
Q Consensus        78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~l~~~~-~l~~~pGQ~v~l~~~~~  130 (361)
                      .|....++.|+|+++..++.. +..+++++.|+.++ .+.|+||+++.|.+.+.
T Consensus        36 ~y~~~nP~~A~v~~n~~L~~~-s~k~~~Hie~dl~~s~l~Y~~GD~l~V~P~N~   88 (279)
T d1ja1a1          36 PFDAKNPFLAAVTANRKLNQG-TERHLMHLELDISDSKIRYESGDHVAVYPAND   88 (279)
T ss_dssp             SCBTTBCEEEEEEEEEECCSS-SSSCEEEEEEECTTSCCCCCTTCEEEECCCCC
T ss_pred             CCCCCCCEEeEEEEEEEeCCC-CCccEEEEEEEcCCCCceecCCCEEEEEeCCC
Confidence            467788999999999999964 55789999999875 79999999999998764