Citrus Sinensis ID: 043025
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 403 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FG38 | 402 | Sorting nexin 1 OS=Arabid | yes | no | 0.995 | 0.997 | 0.833 | 0.0 | |
| Q9CWK8 | 519 | Sorting nexin-2 OS=Mus mu | yes | no | 0.905 | 0.703 | 0.287 | 9e-36 | |
| O60749 | 519 | Sorting nexin-2 OS=Homo s | yes | no | 0.905 | 0.703 | 0.287 | 2e-35 | |
| Q05B62 | 522 | Sorting nexin-1 OS=Bos ta | yes | no | 0.908 | 0.701 | 0.278 | 2e-35 | |
| Q13596 | 522 | Sorting nexin-1 OS=Homo s | no | no | 0.908 | 0.701 | 0.283 | 3e-35 | |
| Q4R503 | 522 | Sorting nexin-1 OS=Macaca | N/A | no | 0.908 | 0.701 | 0.283 | 4e-35 | |
| Q5RFP8 | 522 | Sorting nexin-1 OS=Pongo | yes | no | 0.908 | 0.701 | 0.283 | 5e-35 | |
| Q9WV80 | 522 | Sorting nexin-1 OS=Mus mu | no | no | 0.908 | 0.701 | 0.283 | 1e-34 | |
| Q99N27 | 522 | Sorting nexin-1 OS=Rattus | no | no | 0.908 | 0.701 | 0.283 | 1e-34 | |
| Q2TBW7 | 519 | Sorting nexin-2 OS=Bos ta | no | no | 0.905 | 0.703 | 0.285 | 2e-34 |
| >sp|Q9FG38|SNX1_ARATH Sorting nexin 1 OS=Arabidopsis thaliana GN=SNX1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/402 (83%), Positives = 365/402 (90%), Gaps = 1/402 (0%)
Query: 1 MINTEQQRSASGSSQSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGP 60
M +TEQ R+ SGS QSPRSPSS PYLSVSVTDPVKLGNGVQAYISYRVITKTN PEYQGP
Sbjct: 1 MESTEQPRNISGSMQSPRSPSSHPYLSVSVTDPVKLGNGVQAYISYRVITKTNLPEYQGP 60
Query: 61 EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRI 120
EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRR LD+FVNRI
Sbjct: 61 EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRAALDIFVNRI 120
Query: 121 ASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKE 180
A HPELQQSEDL+TFLQADEETM+R R Q+T FKK PADLMQ+F+DVQSKVSD VLGKE
Sbjct: 121 ALHPELQQSEDLRTFLQADEETMDRFRFQETSIFKK-PADLMQMFRDVQSKVSDAVLGKE 179
Query: 181 KPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG 240
KPVEE+ +YEKLKHYIFELENHL EAQKHAYRLVKRHRELG+SL DFGKA KLLGACEG
Sbjct: 180 KPVEETTADYEKLKHYIFELENHLTEAQKHAYRLVKRHRELGQSLLDFGKAVKLLGACEG 239
Query: 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQ 300
+ GKAFS+LG KSE LS+KLQ+EA Q+LMNFEEPLKDYVR VQSIKATIAER AF+Q
Sbjct: 240 EPTGKAFSDLGTKSELLSIKLQKEAQQVLMNFEEPLKDYVRYVQSIKATIAERGTAFKQH 299
Query: 301 CELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRF 360
CEL+ET KLKEINLDKLMLTRSDKVGEAEIEY+E+KAESE++TRRFE IV+ M +EIVRF
Sbjct: 300 CELSETTKLKEINLDKLMLTRSDKVGEAEIEYREIKAESEEATRRFERIVKRMEDEIVRF 359
Query: 361 QEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACSS 402
QEQKT +MG+AFH F+KGQARLA+S+ADAWR+LLPKLEA S
Sbjct: 360 QEQKTEEMGVAFHQFAKGQARLANSVADAWRSLLPKLEASYS 401
|
Plays a role in vesicular protein sorting. Acts at the crossroads between the secretory and endocytic pathways. Is involved in the endosome to vacuole protein transport via its interaction with the BLOS1/2 proteins and, as component of the membrane-associated retromer complex, is also involved in endosome-to-Golgi retrograde transport. Required for the auxin-carrier protein PIN2 sorting to the lytic vacuolar pathway and the trafficking of several plasma membrane proteins. Also involved in the efficient sorting of seed storage protein globulin 12S. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CWK8|SNX2_MOUSE Sorting nexin-2 OS=Mus musculus GN=Snx2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 189/389 (48%), Gaps = 24/389 (6%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--K 83
+ + V+DP K+G+G+ AY++YRV TKT+ + E V RR+SDF+ L +L KY
Sbjct: 142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 201
Query: 84 GIFIPPLPEKSAVEKFRF--------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS V + S EF+E RR L+ ++ R HP L Q DL+ F
Sbjct: 202 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 261
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKH 195
L E+ E R+ +T A ++++ +K +D V + ES+ +E+ +
Sbjct: 262 L----ESSELPRAVNTQALSG--AGILRMV----NKAADAVNKMTIKMNESDAWFEEKQQ 311
Query: 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG-DALGKAFSELGMKS 254
L+ L + LV +EL + + F K+A +LG E AL +A S+L
Sbjct: 312 QFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVE 371
Query: 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLK--EI 312
E + Q +A F E L DY+R + ++K R + Q+ E A+ LK E
Sbjct: 372 EKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCW-QKWEDAQITLLKKRET 430
Query: 313 NLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372
++ + DK+ +A+ E +E +A+ + R FE I + + +E+ RF++++ D
Sbjct: 431 EAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKAVI 490
Query: 373 HNFSKGQARLASSIADAWRTLLPKLEACS 401
+ + + + W LP+ +A +
Sbjct: 491 IKYLESLVQTQQQLIKYWEAFLPEAKAIA 519
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May be involved in several stages of intracellular trafficking. Component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)) or phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Mus musculus (taxid: 10090) |
| >sp|O60749|SNX2_HUMAN Sorting nexin-2 OS=Homo sapiens GN=SNX2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 189/389 (48%), Gaps = 24/389 (6%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--K 83
+ + V+DP K+G+G+ AY++YRV TKT+ + E V RR+SDF+ L +L KY
Sbjct: 142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 201
Query: 84 GIFIPPLPEKSAVEKFRF--------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS V + S EF+E RR L+ ++ R HP L Q DL+ F
Sbjct: 202 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 261
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKH 195
L E+ E R+ +T A ++++ +K +D V + ES+ +E+ +
Sbjct: 262 L----ESSELPRAVNTQALSG--AGILRMV----NKAADAVNKMTIKMNESDAWFEEKQQ 311
Query: 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG-DALGKAFSELGMKS 254
L+ L + LV +EL + + F K+A +LG E AL +A S+L
Sbjct: 312 QFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVE 371
Query: 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLK--EI 312
E + Q +A F E L DY+R + ++K R + Q+ E A+ LK E
Sbjct: 372 EKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCW-QKWEDAQITLLKKREA 430
Query: 313 NLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372
++ + DK+ +A+ E +E +A+ + R FE I + + +E+ RF++++ D
Sbjct: 431 EAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVI 490
Query: 373 HNFSKGQARLASSIADAWRTLLPKLEACS 401
+ + + + W LP+ +A +
Sbjct: 491 IKYLESLVQTQQQLIKYWEAFLPEAKAIA 519
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May be involved in several stages of intracellular trafficking. Component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)) or phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Homo sapiens (taxid: 9606) |
| >sp|Q05B62|SNX1_BOVIN Sorting nexin-1 OS=Bos taurus GN=SNX1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/388 (27%), Positives = 193/388 (49%), Gaps = 22/388 (5%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--K 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ V RR+SDF+ L ++L EK+
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKHFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 84 GIFIPPLPEKSAVEKFRF--------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKH 195
L+ +E + G A L+++F VS + + + ES+ +E+
Sbjct: 265 LEKEE------LPRAVGTQTLSGAGLLKMFNKATDAVSKMTIN----MNESDIWFEEKLQ 314
Query: 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKS 254
+ E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 315 EVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVE 374
Query: 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETM-KLKEIN 313
E + Q +A+ E L DY+R + ++A +R +++ + T+ K +E
Sbjct: 375 EKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQTTLQKKREAE 434
Query: 314 LDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH 373
L + DK+ +A+ E E ++ R FE I ++ +E++RF+++K+ D
Sbjct: 435 ARLLWANKPDKLQQAKDEIVEWESRVTQYERDFERISTVVRKEVIRFEKEKSRDFRNHVI 494
Query: 374 NFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ +A S
Sbjct: 495 QYLETLLHSQQQLAKYWEAFLPEAKAIS 522
|
May be involved in several stages of intracellular trafficking. Plays a role in targeting ligand-activated EGFR to the lysosomes for degradation after endocytosis from the cell surface and release from the Golgi. Component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)) or phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Bos taurus (taxid: 9913) |
| >sp|Q13596|SNX1_HUMAN Sorting nexin-1 OS=Homo sapiens GN=SNX1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/388 (28%), Positives = 192/388 (49%), Gaps = 22/388 (5%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--K 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ + V RR+SDF+ L ++L EK+
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 84 GIFIPPLPEKSAVEKFRF--------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKH 195
L+ +E + G A L+++F VS + + + ES+ +E+
Sbjct: 265 LEKEE------LPRAVGTQTLSGAGLLKMFNKATDAVSKMTIK----MNESDIWFEEKLQ 314
Query: 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKS 254
+ E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 315 EVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVE 374
Query: 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAETMKLKEIN 313
E + Q +A+ E L DY+R + ++A +R + R Q A K +E
Sbjct: 375 EKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAE 434
Query: 314 LDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH 373
L + DK+ +A+ E E ++ R FE I ++ +E++RF+++K+ D
Sbjct: 435 ARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVI 494
Query: 374 NFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ +A S
Sbjct: 495 KYLETLLYSQQQLAKYWEAFLPEAKAIS 522
|
May be involved in several stages of intracellular trafficking. Plays a role in targeting ligand-activated EGFR to the lysosomes for degradation after endocytosis from the cell surface and release from the Golgi. Component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)) or phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Homo sapiens (taxid: 9606) |
| >sp|Q4R503|SNX1_MACFA Sorting nexin-1 OS=Macaca fascicularis GN=SNX1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 110/388 (28%), Positives = 192/388 (49%), Gaps = 22/388 (5%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--K 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ + V RR+SDF+ L ++L EK+
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 84 GIFIPPLPEKSAVEKFRF--------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKH 195
L+ +E + G A L+++F VS + + + ES+ +E+
Sbjct: 265 LEKEE------LPRAVGTQTLSGAGLLKMFNKATDAVSKMTIK----MNESDIWFEEKLQ 314
Query: 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKS 254
+ E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 315 EVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVE 374
Query: 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAETMKLKEIN 313
E + Q +A+ E L DY+R + ++A +R + R Q A K +E
Sbjct: 375 EKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAE 434
Query: 314 LDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH 373
L + DK+ +A+ E E ++ R FE I ++ +E++RF+++K+ D
Sbjct: 435 ARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVMRFEKEKSKDFKNHVI 494
Query: 374 NFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ +A S
Sbjct: 495 KYLETLLYSQQQLAKYWEAFLPEAKAIS 522
|
May be involved in several stages of intracellular trafficking. Plays a role in targeting ligand-activated EGFR to the lysosomes for degradation after endocytosis from the cell surface and release from the Golgi. Component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)) or phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Macaca fascicularis (taxid: 9541) |
| >sp|Q5RFP8|SNX1_PONAB Sorting nexin-1 OS=Pongo abelii GN=SNX1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 110/388 (28%), Positives = 191/388 (49%), Gaps = 22/388 (5%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--K 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ + V RR+SDF+ L ++L EK+
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 84 GIFIPPLPEKSAVEKFRF--------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYIQRIVNHPTMLQDPDVREF 264
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKH 195
L+ +E + G A L ++F VS + + + ES+ +E+
Sbjct: 265 LEKEE------LPRAVGTQTLSGAGLPKMFNKATDAVSKMTIK----MNESDIWFEEKLQ 314
Query: 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKS 254
+ E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 315 EVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVE 374
Query: 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAETMKLKEIN 313
E + Q +A+ E L DY+R + ++A +R + R Q A K +E
Sbjct: 375 EKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAE 434
Query: 314 LDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH 373
L + DK+ +A+ E E ++ R FE I ++ +E++RF+++K+ D
Sbjct: 435 ARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVI 494
Query: 374 NFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ +A S
Sbjct: 495 KYLETLLYSQQQLAKYWEAFLPEAKAIS 522
|
May be involved in several stages of intracellular trafficking. Plays a role in targeting ligand-activated EGFR to the lysosomes for degradation after endocytosis from the cell surface and release from the Golgi. Component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)) or phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Pongo abelii (taxid: 9601) |
| >sp|Q9WV80|SNX1_MOUSE Sorting nexin-1 OS=Mus musculus GN=Snx1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/388 (28%), Positives = 191/388 (49%), Gaps = 22/388 (5%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--K 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ + V RR+SDF+ L ++L EK+
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSRQFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 84 GIFIPPLPEKSAVEKFRF--------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKH 195
L+ +E + G A L+++F VS + + + ES+ +E+
Sbjct: 265 LEKEE------LPRAVGTQALSGAGLLKMFNKATDAVSKMTIK----MNESDIWFEEKLQ 314
Query: 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKS 254
+ E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 315 EVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVE 374
Query: 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAETMKLKEIN 313
E + Q +A+ E L DY+R + ++A +R + R Q A K +E
Sbjct: 375 EKIEQLHQEQANNDSFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKRESE 434
Query: 314 LDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH 373
L + DK+ +A+ E E ++ R FE I ++ +E+ RF+++K+ D
Sbjct: 435 ARLLWANKPDKLQQAKDEITEWESRVTQYERDFERISTVVRKEVTRFEKEKSKDFKNHVM 494
Query: 374 NFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ +A S
Sbjct: 495 KYLETLLHSQQQLAKYWEAFLPEAKAIS 522
|
May be involved in several stages of intracellular trafficking. Plays a role in targeting ligand-activated EGFR to the lysosomes for degradation after endocytosis from the cell surface and release from the Golgi. Component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)) or phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Mus musculus (taxid: 10090) |
| >sp|Q99N27|SNX1_RAT Sorting nexin-1 OS=Rattus norvegicus GN=Snx1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/388 (28%), Positives = 190/388 (48%), Gaps = 22/388 (5%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--K 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ + V RR+SDF+ L ++L EK+
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSRQFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 84 GIFIPPLPEKSAVEKFRF--------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKH 195
L+ +E + G A L+++F VS + + + ES+ +E+
Sbjct: 265 LEKEE------LPRAVGTQALSGAGLLKMFNKATDAVSKMTIK----MNESDIWFEEKLQ 314
Query: 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKS 254
+ E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 315 EVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVE 374
Query: 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAETMKLKEIN 313
E + Q +A+ E L DY+R + ++A +R + R Q A K +E
Sbjct: 375 EKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKRESE 434
Query: 314 LDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH 373
L + DK+ +A+ E E ++ R FE I ++ +E+ RF+++K+ D
Sbjct: 435 ARLLWANKPDKLQQAKDEITEWESRVTQYERDFERISTVVRKEVTRFEKEKSKDFKNHVI 494
Query: 374 NFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ A S
Sbjct: 495 KYLETLLHSQQQLAKYWEAFLPEARAIS 522
|
May be involved in several stages of intracellular trafficking. Plays a role in targeting ligand-activated EGFR to the lysosomes for degradation after endocytosis from the cell surface and release from the Golgi. Component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)) or phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Rattus norvegicus (taxid: 10116) |
| >sp|Q2TBW7|SNX2_BOVIN Sorting nexin-2 OS=Bos taurus GN=SNX2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 111/389 (28%), Positives = 188/389 (48%), Gaps = 24/389 (6%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--K 83
+ + V+DP K+G+G+ AY++YRV TKT+ + E V RR+SDF+ L +L KY
Sbjct: 142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 201
Query: 84 GIFIPPLPEKSAVEKFRF--------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS V + S EF+E RR L+ ++ R HP L Q DL+ F
Sbjct: 202 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 261
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKH 195
L E+ E R+ +T A ++++ +K +D V + ES+ +E+ +
Sbjct: 262 L----ESSELPRAVNTQALSG--AGILRMV----NKAADAVNKMTIKMNESDAWFEEKQQ 311
Query: 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG-DALGKAFSELGMKS 254
+ L + LV +EL + + F K+A +LG E AL +A S+L
Sbjct: 312 QFENQDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVE 371
Query: 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLK--EI 312
E + Q +A F E L DY+R + ++K R + Q+ E A+ LK E
Sbjct: 372 EKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRVKCW-QKWEDAQITLLKKRET 430
Query: 313 NLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372
++ + DK+ +A+ E +E +A+ + R FE I + + +E+ RF++++ D
Sbjct: 431 EAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVI 490
Query: 373 HNFSKGQARLASSIADAWRTLLPKLEACS 401
+ + + + W LP+ +A +
Sbjct: 491 IKYLESLVQTQQQLIKYWEAFLPEAKAIA 519
|
May be involved in several stages of intracellular trafficking. Component of the retromer complex, a complex required to retrieve lysosomal enzyme receptors (IGF2R and M6PR) from endosomes to the trans-Golgi network. Interacts with membranes containing phosphatidylinositol 3-phosphate (PtdIns(3P)) or phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2). Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 403 | ||||||
| 359481615 | 401 | PREDICTED: sorting nexin-1 [Vitis vinife | 0.947 | 0.952 | 0.892 | 0.0 | |
| 255578989 | 399 | sorting nexin 3, putative [Ricinus commu | 0.937 | 0.947 | 0.902 | 0.0 | |
| 356498739 | 405 | PREDICTED: sorting nexin-2-like [Glycine | 0.940 | 0.935 | 0.905 | 0.0 | |
| 358248253 | 405 | uncharacterized protein LOC100804649 [Gl | 0.940 | 0.935 | 0.902 | 0.0 | |
| 297810713 | 403 | phox domain-containing protein [Arabidop | 0.990 | 0.990 | 0.847 | 0.0 | |
| 37936234 | 401 | sorting nexin 1 [Brassica oleracea] | 0.987 | 0.992 | 0.837 | 0.0 | |
| 449451150 | 400 | PREDICTED: sorting nexin 1-like [Cucumis | 0.990 | 0.997 | 0.867 | 0.0 | |
| 15239935 | 402 | sorting nexin 1 [Arabidopsis thaliana] g | 0.995 | 0.997 | 0.833 | 0.0 | |
| 224138446 | 392 | predicted protein [Populus trichocarpa] | 0.910 | 0.936 | 0.875 | 0.0 | |
| 116789810 | 408 | unknown [Picea sitchensis] | 0.980 | 0.968 | 0.744 | 1e-176 |
| >gi|359481615|ref|XP_002282010.2| PREDICTED: sorting nexin-1 [Vitis vinifera] gi|297740147|emb|CBI30329.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/382 (89%), Positives = 367/382 (96%)
Query: 22 SQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEK 81
+QP+LSVSVTDPVKLGNGVQAYISYRVITKTN PEYQG EKIVIRRYSDFVWLRDRLFEK
Sbjct: 20 AQPFLSVSVTDPVKLGNGVQAYISYRVITKTNLPEYQGQEKIVIRRYSDFVWLRDRLFEK 79
Query: 82 YKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141
YKGIF+PPLPEKSAVEKFRFSAEFIEMRRQ LD+FVNRIASH ELQQSEDL+TFLQADEE
Sbjct: 80 YKGIFVPPLPEKSAVEKFRFSAEFIEMRRQALDIFVNRIASHHELQQSEDLRTFLQADEE 139
Query: 142 TMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELE 201
TMER RSQ+TG FKKKPADLMQIFKDVQS+VSDVVLGKEKPVEESNPEYEK+KHYIFELE
Sbjct: 140 TMERARSQETGIFKKKPADLMQIFKDVQSRVSDVVLGKEKPVEESNPEYEKMKHYIFELE 199
Query: 202 NHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKL 261
NHLAEAQKHAYRLVKRHRELG+SLSDFGKA K+LGACEG+ LGKAFSELG KSE +S+KL
Sbjct: 200 NHLAEAQKHAYRLVKRHRELGQSLSDFGKAVKILGACEGNGLGKAFSELGTKSEMISIKL 259
Query: 262 QREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTR 321
Q+EAH LLMNFEEPLKDYVRAVQSIKATIAERANAFR QCELAET+KLKEINLDKLMLTR
Sbjct: 260 QKEAHHLLMNFEEPLKDYVRAVQSIKATIAERANAFRLQCELAETIKLKEINLDKLMLTR 319
Query: 322 SDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQAR 381
SD+VGEAEIEYKELKAESE++T+RFETIVRLMNEEIVRFQEQKTLDMG+AFH F+KGQAR
Sbjct: 320 SDRVGEAEIEYKELKAESEEATKRFETIVRLMNEEIVRFQEQKTLDMGLAFHEFAKGQAR 379
Query: 382 LASSIADAWRTLLPKLEACSSS 403
LA+ IADAWR+L+PKLE+CS +
Sbjct: 380 LANGIADAWRSLIPKLESCSPA 401
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255578989|ref|XP_002530347.1| sorting nexin 3, putative [Ricinus communis] gi|223530151|gb|EEF32063.1| sorting nexin 3, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/378 (90%), Positives = 363/378 (96%)
Query: 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
YLSV VTDPVKLGNGVQ+YISYRVITKTNFPEYQGPEKIVIRRYSDFVWL DRLFEKYKG
Sbjct: 22 YLSVLVTDPVKLGNGVQSYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLHDRLFEKYKG 81
Query: 85 IFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETME 144
+FIPPLPEKSAVEKFRFSAEFIEMRRQ LD+FVNRIASH ELQQSEDL+TFL+ADEETME
Sbjct: 82 VFIPPLPEKSAVEKFRFSAEFIEMRRQALDIFVNRIASHHELQQSEDLRTFLEADEETME 141
Query: 145 RLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHL 204
RLR+ +TG FKKKPAD MQIFKDVQ+KVSDV+LGKEKPVEESNPEYEKLKHYIFELENHL
Sbjct: 142 RLRAYETGIFKKKPADFMQIFKDVQTKVSDVILGKEKPVEESNPEYEKLKHYIFELENHL 201
Query: 205 AEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQRE 264
+EAQKHAYRLVKRHRELG+SLSDFGKAAKLLGACEG+ALGKAFS+LG KSE LS +LQ+E
Sbjct: 202 SEAQKHAYRLVKRHRELGQSLSDFGKAAKLLGACEGEALGKAFSDLGAKSETLSARLQKE 261
Query: 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDK 324
AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFR QCELAET+KLKEINLDKLMLTRSDK
Sbjct: 262 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRHQCELAETIKLKEINLDKLMLTRSDK 321
Query: 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLAS 384
VGEAEIEYKELKAE E++TRRFE IVR+MNEEIVRFQEQKT DMGIAFH F+KGQARLA+
Sbjct: 322 VGEAEIEYKELKAEGEEATRRFENIVRVMNEEIVRFQEQKTQDMGIAFHEFAKGQARLAN 381
Query: 385 SIADAWRTLLPKLEACSS 402
SIADAWR+LLPKLEACSS
Sbjct: 382 SIADAWRSLLPKLEACSS 399
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498739|ref|XP_003518207.1| PREDICTED: sorting nexin-2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/379 (90%), Positives = 361/379 (95%)
Query: 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
+LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG
Sbjct: 27 FLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 86
Query: 85 IFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETME 144
IFIPPLPEKSAVEKFRFSAEFIEMRRQ LD+FVNRIASH ELQQSEDL+ FLQA+EETME
Sbjct: 87 IFIPPLPEKSAVEKFRFSAEFIEMRRQALDVFVNRIASHHELQQSEDLRLFLQAEEETME 146
Query: 145 RLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHL 204
RLRS +TG FKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEK+KHYIFELENHL
Sbjct: 147 RLRSHETGIFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKMKHYIFELENHL 206
Query: 205 AEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQRE 264
AEAQKHAYRLVKRHRELG+SLSDFGKA KLLGA EG+ALGKAFSELGMKSE LS KLQ+E
Sbjct: 207 AEAQKHAYRLVKRHRELGQSLSDFGKAVKLLGASEGNALGKAFSELGMKSEILSAKLQKE 266
Query: 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDK 324
AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFR+QCELAETMKLKEINLDKLML RSDK
Sbjct: 267 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRRQCELAETMKLKEINLDKLMLIRSDK 326
Query: 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLAS 384
V EAE EYKELKAESE +T+ FE IV+LMNEE+ RFQEQKTLDMGIAFH F+KGQARLA+
Sbjct: 327 VAEAEHEYKELKAESEQATKTFEMIVKLMNEEMGRFQEQKTLDMGIAFHEFAKGQARLAN 386
Query: 385 SIADAWRTLLPKLEACSSS 403
IADAWR+LLPKLEACS+S
Sbjct: 387 GIADAWRSLLPKLEACSTS 405
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358248253|ref|NP_001239848.1| uncharacterized protein LOC100804649 [Glycine max] gi|255640209|gb|ACU20395.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/379 (90%), Positives = 361/379 (95%)
Query: 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
+LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG
Sbjct: 27 FLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 86
Query: 85 IFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETME 144
IFIPPLPEKSAVEKFRFSAEFIEMRRQ LD+FVNRIASH EL+QSEDL+ FLQA+EETME
Sbjct: 87 IFIPPLPEKSAVEKFRFSAEFIEMRRQALDVFVNRIASHHELKQSEDLRLFLQAEEETME 146
Query: 145 RLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHL 204
RLRS +TG FKKKPADLMQIFKDVQSKVSDVVLGKEKPVEES+PEYEK+KHYIFELENHL
Sbjct: 147 RLRSHETGIFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESDPEYEKMKHYIFELENHL 206
Query: 205 AEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQRE 264
AEAQKHAYRLVKRHRELG+SLSDFGKA KLLGA EG+ALGKAFSELGMKSE LS KLQ+E
Sbjct: 207 AEAQKHAYRLVKRHRELGQSLSDFGKAVKLLGASEGNALGKAFSELGMKSEILSAKLQKE 266
Query: 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDK 324
AHQLLMNFEEPLKDYV AVQSIKATIAERANAFR+QCELAETMKLKEINLDKLML RSDK
Sbjct: 267 AHQLLMNFEEPLKDYVHAVQSIKATIAERANAFRRQCELAETMKLKEINLDKLMLIRSDK 326
Query: 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLAS 384
V EAE EYKELKAESE +T+ FETIV+LMNEE+ RFQEQKTLDMGIAFH F+KGQARLA+
Sbjct: 327 VAEAEHEYKELKAESEQATKTFETIVKLMNEEMGRFQEQKTLDMGIAFHEFAKGQARLAN 386
Query: 385 SIADAWRTLLPKLEACSSS 403
IADAWR+LLPKLEACSSS
Sbjct: 387 GIADAWRSLLPKLEACSSS 405
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810713|ref|XP_002873240.1| phox domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319077|gb|EFH49499.1| phox domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/400 (84%), Positives = 367/400 (91%), Gaps = 1/400 (0%)
Query: 3 NTEQQRSASGSSQSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEK 62
TEQ R+ SGS QSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTN PEYQGPEK
Sbjct: 4 TTEQPRNISGSMQSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNLPEYQGPEK 63
Query: 63 IVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIAS 122
IVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRR LD+FVNRIA
Sbjct: 64 IVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRAALDIFVNRIAL 123
Query: 123 HPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKP 182
HPELQQSEDL+TFLQADEETM+R R Q+TG FKK PADLMQ+F+DVQSKVSD VLGKEKP
Sbjct: 124 HPELQQSEDLRTFLQADEETMDRFRFQETGIFKK-PADLMQMFRDVQSKVSDAVLGKEKP 182
Query: 183 VEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDA 242
VEE+ +YEKLKHYIFELENHLAEAQKHAYRLVKRHRELG+SL DFGKA KLLGACEG+
Sbjct: 183 VEETTADYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGQSLLDFGKAVKLLGACEGEP 242
Query: 243 LGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCE 302
GKAFS+LG KSE LS+KLQ+EA Q+LMNFEEPLKDYVR VQSIKATIAER AF+Q CE
Sbjct: 243 TGKAFSDLGTKSELLSIKLQKEAQQVLMNFEEPLKDYVRYVQSIKATIAERGTAFKQHCE 302
Query: 303 LAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQE 362
LAET KLKEINLDKLMLTRSDKVGEAEIEY+E+KAESE++TRRFE IV+ M EEIVRFQE
Sbjct: 303 LAETTKLKEINLDKLMLTRSDKVGEAEIEYREIKAESEEATRRFERIVKRMEEEIVRFQE 362
Query: 363 QKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACSS 402
QKT +MG+AFH F+KGQARLA+S+ADAWR+LLPKLEA S+
Sbjct: 363 QKTEEMGVAFHQFAKGQARLANSVADAWRSLLPKLEASST 402
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|37936234|emb|CAD29576.1| sorting nexin 1 [Brassica oleracea] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/401 (83%), Positives = 364/401 (90%), Gaps = 3/401 (0%)
Query: 3 NTEQQRSASGSSQSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEK 62
+TEQ R+ QSPRSPSSQPYLS SVTDPVKLGNGVQAYISYRVITKTN PEYQGPEK
Sbjct: 4 STEQARNVM---QSPRSPSSQPYLSASVTDPVKLGNGVQAYISYRVITKTNLPEYQGPEK 60
Query: 63 IVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIAS 122
IVIRRYSDFVWLRDRLFEKYKG+F+PPLPEKSAVEKFRFSAEFIEMRR LD+FVNRIAS
Sbjct: 61 IVIRRYSDFVWLRDRLFEKYKGVFVPPLPEKSAVEKFRFSAEFIEMRRAALDIFVNRIAS 120
Query: 123 HPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKP 182
HPELQQSEDL+TFLQADEETMER R Q+TG F KKPAD MQ+F+DVQSKVSD VLGKEKP
Sbjct: 121 HPELQQSEDLRTFLQADEETMERFRFQETGIFNKKPADFMQMFRDVQSKVSDAVLGKEKP 180
Query: 183 VEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDA 242
VEE+ PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELG+SL DFGKA KLLGACEG+
Sbjct: 181 VEETTPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGQSLLDFGKAVKLLGACEGEP 240
Query: 243 LGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCE 302
GK FS+LG KSE +S+KLQ+EA Q+LMNFEEPLKDYVR VQSIKATIAERA AF+Q CE
Sbjct: 241 TGKLFSDLGTKSELVSIKLQKEAQQVLMNFEEPLKDYVRYVQSIKATIAERATAFKQHCE 300
Query: 303 LAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQE 362
LAET KLKEINLDKLMLTRSDKVGEAEIEY+E+KAESE++T RFE IV+ MNEEIVRFQE
Sbjct: 301 LAETTKLKEINLDKLMLTRSDKVGEAEIEYREMKAESEEATIRFERIVKRMNEEIVRFQE 360
Query: 363 QKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACSSS 403
QKT +MG+AFH F+KGQARLA+ IADAWR LLPKLEA SS+
Sbjct: 361 QKTEEMGVAFHQFAKGQARLANGIADAWRALLPKLEAASSA 401
|
Source: Brassica oleracea Species: Brassica oleracea Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451150|ref|XP_004143325.1| PREDICTED: sorting nexin 1-like [Cucumis sativus] gi|449508423|ref|XP_004163308.1| PREDICTED: sorting nexin 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/399 (86%), Positives = 373/399 (93%)
Query: 5 EQQRSASGSSQSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIV 64
EQ+RS GSS SPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIV
Sbjct: 2 EQERSLPGSSLSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIV 61
Query: 65 IRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHP 124
IRRY+DFVWL DRLFEKYKGIFIP LPEK+AVEKFRFSAEFIEMRRQ LD+FVNRIASH
Sbjct: 62 IRRYNDFVWLHDRLFEKYKGIFIPSLPEKNAVEKFRFSAEFIEMRRQALDIFVNRIASHH 121
Query: 125 ELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVE 184
ELQ+SEDL+TFLQA+EETMERLRS D+G FKKKPADLMQIFKDVQSKVSD+VLGKEKPVE
Sbjct: 122 ELQKSEDLRTFLQAEEETMERLRSHDSGIFKKKPADLMQIFKDVQSKVSDIVLGKEKPVE 181
Query: 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALG 244
ESNPEYEKLKHYIFELENHL EAQKHAYRLVKRHRELG++LSDFGKAAKLLGACE +A+G
Sbjct: 182 ESNPEYEKLKHYIFELENHLTEAQKHAYRLVKRHRELGQALSDFGKAAKLLGACEENAVG 241
Query: 245 KAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELA 304
K FSE+G KSE LSVKLQ+EAHQLLMNFEEPLKDYVR VQSIKATIAERANAFRQQCELA
Sbjct: 242 KGFSEMGAKSEMLSVKLQKEAHQLLMNFEEPLKDYVRTVQSIKATIAERANAFRQQCELA 301
Query: 305 ETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQK 364
ET +LKEINLDKLML RSDK EAE+EYKELKA SE++T+RFETIV LMN+E VRFQEQK
Sbjct: 302 ETTRLKEINLDKLMLMRSDKASEAEVEYKELKAASEEATKRFETIVALMNQETVRFQEQK 361
Query: 365 TLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACSSS 403
TLD+G+AFH F+KGQARLA+ +ADAWR+LLPKLEA S S
Sbjct: 362 TLDVGLAFHEFAKGQARLANGVADAWRSLLPKLEALSVS 400
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239935|ref|NP_196232.1| sorting nexin 1 [Arabidopsis thaliana] gi|75170355|sp|Q9FG38.1|SNX1_ARATH RecName: Full=Sorting nexin 1; Short=AtSNX1; AltName: Full=Vacuolar protein sorting-associated protein 5 homolog gi|10257486|dbj|BAB10207.1| sorting nexin-like protein [Arabidopsis thaliana] gi|119935967|gb|ABM06047.1| At5g06140 [Arabidopsis thaliana] gi|332003592|gb|AED90975.1| sorting nexin 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/402 (83%), Positives = 365/402 (90%), Gaps = 1/402 (0%)
Query: 1 MINTEQQRSASGSSQSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGP 60
M +TEQ R+ SGS QSPRSPSS PYLSVSVTDPVKLGNGVQAYISYRVITKTN PEYQGP
Sbjct: 1 MESTEQPRNISGSMQSPRSPSSHPYLSVSVTDPVKLGNGVQAYISYRVITKTNLPEYQGP 60
Query: 61 EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRI 120
EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRR LD+FVNRI
Sbjct: 61 EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRAALDIFVNRI 120
Query: 121 ASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKE 180
A HPELQQSEDL+TFLQADEETM+R R Q+T FKK PADLMQ+F+DVQSKVSD VLGKE
Sbjct: 121 ALHPELQQSEDLRTFLQADEETMDRFRFQETSIFKK-PADLMQMFRDVQSKVSDAVLGKE 179
Query: 181 KPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG 240
KPVEE+ +YEKLKHYIFELENHL EAQKHAYRLVKRHRELG+SL DFGKA KLLGACEG
Sbjct: 180 KPVEETTADYEKLKHYIFELENHLTEAQKHAYRLVKRHRELGQSLLDFGKAVKLLGACEG 239
Query: 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQ 300
+ GKAFS+LG KSE LS+KLQ+EA Q+LMNFEEPLKDYVR VQSIKATIAER AF+Q
Sbjct: 240 EPTGKAFSDLGTKSELLSIKLQKEAQQVLMNFEEPLKDYVRYVQSIKATIAERGTAFKQH 299
Query: 301 CELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRF 360
CEL+ET KLKEINLDKLMLTRSDKVGEAEIEY+E+KAESE++TRRFE IV+ M +EIVRF
Sbjct: 300 CELSETTKLKEINLDKLMLTRSDKVGEAEIEYREIKAESEEATRRFERIVKRMEDEIVRF 359
Query: 361 QEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACSS 402
QEQKT +MG+AFH F+KGQARLA+S+ADAWR+LLPKLEA S
Sbjct: 360 QEQKTEEMGVAFHQFAKGQARLANSVADAWRSLLPKLEASYS 401
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224138446|ref|XP_002322816.1| predicted protein [Populus trichocarpa] gi|222867446|gb|EEF04577.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/378 (87%), Positives = 347/378 (91%), Gaps = 11/378 (2%)
Query: 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
YLSVSVTDPVKLGNGVQAYISYRVITKTN PEYQG EKIVIRRY DFVWLRDRLF+K+KG
Sbjct: 26 YLSVSVTDPVKLGNGVQAYISYRVITKTNLPEYQGHEKIVIRRYRDFVWLRDRLFDKFKG 85
Query: 85 IFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETME 144
+FIPPLPEKSAVEKFRFSAEFIEMRRQGLD+FVNRIASH ELQQSEDL+TFLQADEETME
Sbjct: 86 VFIPPLPEKSAVEKFRFSAEFIEMRRQGLDIFVNRIASHQELQQSEDLRTFLQADEETME 145
Query: 145 RLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHL 204
RLRSQ+TG FKKKPAD MQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHL
Sbjct: 146 RLRSQETGIFKKKPADFMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHL 205
Query: 205 AEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQRE 264
AEAQKHAYRLVKRHRELG+SL DFGKAAKLLGACEGD LGKAFS+LG KSEALSVKLQ+E
Sbjct: 206 AEAQKHAYRLVKRHRELGQSLLDFGKAAKLLGACEGDILGKAFSDLGTKSEALSVKLQKE 265
Query: 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDK 324
AHQLLMNFEEPLKDYVRA ATI ERANAFR QCELAETMKLKEINL L RS
Sbjct: 266 AHQLLMNFEEPLKDYVRA-----ATITERANAFRHQCELAETMKLKEINLYVLWEKRSMN 320
Query: 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLAS 384
G ++LKAESE++TRRFETIVRLMNEEIVRFQEQKTLDMGIAFH F+KGQARLA+
Sbjct: 321 TG------RQLKAESEEATRRFETIVRLMNEEIVRFQEQKTLDMGIAFHEFAKGQARLAN 374
Query: 385 SIADAWRTLLPKLEACSS 402
SIADAWR+LLPKLEACSS
Sbjct: 375 SIADAWRSLLPKLEACSS 392
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|116789810|gb|ABK25396.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1612), Expect = e-176, Method: Compositional matrix adjust.
Identities = 297/399 (74%), Positives = 352/399 (88%), Gaps = 4/399 (1%)
Query: 6 QQRSASGSSQSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVI 65
+QRS+ GS+ SP S+QP+L VSVTDPVK+GNGVQAY+SYRVITKTN PEY+GPEKIVI
Sbjct: 4 KQRSSVGSAMSP---STQPFLKVSVTDPVKMGNGVQAYVSYRVITKTNMPEYRGPEKIVI 60
Query: 66 RRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPE 125
RRYSDFVWL +RL E+ KGIFIPPLPEK+AVEKFRFSAEFIE+RR+GLD+F+NRIASHP+
Sbjct: 61 RRYSDFVWLHERLAERNKGIFIPPLPEKNAVEKFRFSAEFIELRRRGLDVFINRIASHPQ 120
Query: 126 LQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEE 185
LQ SEDLK FLQA+EE MER+RS +T F KKP++ MQIFKDVQSKVSDVVLGKEKP+EE
Sbjct: 121 LQHSEDLKHFLQAEEEAMERVRSLETSIFGKKPSEFMQIFKDVQSKVSDVVLGKEKPIEE 180
Query: 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGK 245
S+PEYEKLKHYIFELE+HLAEAQK A+RLVKRHRELG+SL DFGKA KLLG CEG +LGK
Sbjct: 181 SDPEYEKLKHYIFELEDHLAEAQKQAFRLVKRHRELGQSLVDFGKAVKLLGTCEGGSLGK 240
Query: 246 AFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAE 305
AFSELG +SE LS KLQ+EA LLMNFEEPLKDYVR VQSIKAT+A+RA AFRQQCEL E
Sbjct: 241 AFSELGSQSELLSFKLQKEAQDLLMNFEEPLKDYVRTVQSIKATMADRAQAFRQQCELTE 300
Query: 306 TMKLKEINLDKLMLTRSD-KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQK 364
+ KLKEIN+++L TR + KV EAE +Y+E+K +SE++T++ +TI+ MNEEI+RFQE+K
Sbjct: 301 SAKLKEINVERLKATRQEHKVPEAEADYREVKVQSEEATKQLQTIIEFMNEEIIRFQEEK 360
Query: 365 TLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACSSS 403
TLD+G FH F+KGQA+LA+ IA+AWRTLLPKLE+CS +
Sbjct: 361 TLDLGSVFHEFAKGQAQLANDIAEAWRTLLPKLESCSQN 399
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 403 | ||||||
| TAIR|locus:2152850 | 402 | SNX1 "sorting nexin 1" [Arabid | 0.935 | 0.937 | 0.841 | 5.2e-168 | |
| UNIPROTKB|E2QYJ3 | 521 | SNX1 "Uncharacterized protein" | 0.905 | 0.700 | 0.298 | 6.1e-39 | |
| UNIPROTKB|F1MYH6 | 474 | SNX1 "Sorting nexin-1" [Bos ta | 0.905 | 0.770 | 0.293 | 7.8e-39 | |
| UNIPROTKB|F1N399 | 522 | SNX1 "Sorting nexin-1" [Bos ta | 0.905 | 0.699 | 0.293 | 7.8e-39 | |
| UNIPROTKB|Q05B62 | 522 | SNX1 "Sorting nexin-1" [Bos ta | 0.905 | 0.699 | 0.290 | 7.8e-39 | |
| UNIPROTKB|Q13596 | 522 | SNX1 "Sorting nexin-1" [Homo s | 0.905 | 0.699 | 0.298 | 7.8e-39 | |
| UNIPROTKB|F1S0A3 | 469 | SNX1 "Uncharacterized protein" | 0.905 | 0.778 | 0.298 | 9.9e-39 | |
| UNIPROTKB|F1MZN7 | 519 | SNX2 "Sorting nexin-2" [Bos ta | 0.900 | 0.699 | 0.294 | 1.3e-38 | |
| UNIPROTKB|Q4R503 | 522 | SNX1 "Sorting nexin-1" [Macaca | 0.905 | 0.699 | 0.298 | 1.3e-38 | |
| UNIPROTKB|Q5RFP8 | 522 | SNX1 "Sorting nexin-1" [Pongo | 0.905 | 0.699 | 0.298 | 1.3e-38 |
| TAIR|locus:2152850 SNX1 "sorting nexin 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1634 (580.3 bits), Expect = 5.2e-168, P = 5.2e-168
Identities = 318/378 (84%), Positives = 346/378 (91%)
Query: 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
YLSVSVTDPVKLGNGVQAYISYRVITKTN PEYQGPEKIVIRRYSDFVWLRDRLFEKYKG
Sbjct: 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNLPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
Query: 85 IFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETME 144
IFIPPLPEKSAVEKFRFSAEFIEMRR LD+FVNRIA HPELQQSEDL+TFLQADEETM+
Sbjct: 85 IFIPPLPEKSAVEKFRFSAEFIEMRRAALDIFVNRIALHPELQQSEDLRTFLQADEETMD 144
Query: 145 RLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHL 204
R R Q+T FKK PADLMQ+F+DVQSKVSD VLGKEKPVEE+ +YEKLKHYIFELENHL
Sbjct: 145 RFRFQETSIFKK-PADLMQMFRDVQSKVSDAVLGKEKPVEETTADYEKLKHYIFELENHL 203
Query: 205 AEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQRE 264
EAQKHAYRLVKRHRELG+SL DFGKA KLLGACEG+ GKAFS+LG KSE LS+KLQ+E
Sbjct: 204 TEAQKHAYRLVKRHRELGQSLLDFGKAVKLLGACEGEPTGKAFSDLGTKSELLSIKLQKE 263
Query: 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDK 324
A Q+LMNFEEPLKDYVR VQSIKATIAER AF+Q CEL+ET KLKEINLDKLMLTRSDK
Sbjct: 264 AQQVLMNFEEPLKDYVRYVQSIKATIAERGTAFKQHCELSETTKLKEINLDKLMLTRSDK 323
Query: 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLAS 384
VGEAEIEY+E+KAESE++TRRFE IV+ M +EIVRFQEQKT +MG+AFH F+KGQARLA+
Sbjct: 324 VGEAEIEYREIKAESEEATRRFERIVKRMEDEIVRFQEQKTEEMGVAFHQFAKGQARLAN 383
Query: 385 SIADAWRTLLPKLEACSS 402
S+ADAWR+LLPKLEA S
Sbjct: 384 SVADAWRSLLPKLEASYS 401
|
|
| UNIPROTKB|E2QYJ3 SNX1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 116/389 (29%), Positives = 197/389 (50%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK-- 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ + V RR+SDF+ L ++L EK+
Sbjct: 144 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 203
Query: 84 GIFIPPLPEKSAV--EKFRF------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + K + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 204 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 263
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYE-KLK 194
L+ +E + R T A L+++F +K +D V + ES+ +E KL+
Sbjct: 264 LEKEE--LPRAVGTQT----LSGAGLLKMF----NKATDAVSKMTIKMNESDIWFEEKLQ 313
Query: 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMK 253
E E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 314 EVECE-EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEV 372
Query: 254 SEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAETMKLKEI 312
E + Q +A+ E L DY+R + ++A +R + R Q A K +E
Sbjct: 373 EEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREA 432
Query: 313 NLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372
L + DK+ +A+ E E ++ R FE I ++ +E++RF+++K+ D
Sbjct: 433 EARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHV 492
Query: 373 HNFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ +A S
Sbjct: 493 IKYLETLLYSQQQLAKYWEAFLPEAKAIS 521
|
|
| UNIPROTKB|F1MYH6 SNX1 "Sorting nexin-1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 114/389 (29%), Positives = 198/389 (50%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK-- 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ V RR+SDF+ L ++L EK+
Sbjct: 97 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKHFAVKRRFSDFLGLYEKLSEKHSQN 156
Query: 84 GIFIPPLPEKSAV--EKFRF------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + K + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 157 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 216
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYE-KLK 194
L+ +E + R T A L+++F +K +D V + ES+ +E KL+
Sbjct: 217 LEKEE--LPRAVGTQT----LSGAGLLKMF----NKATDAVSKMTIKMNESDIWFEEKLQ 266
Query: 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMK 253
E E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 267 EVECE-EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEV 325
Query: 254 SEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETM-KLKEI 312
E + Q +A+ E L DY+R + ++A +R +++ + T+ K +E
Sbjct: 326 EEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQTTLQKKREA 385
Query: 313 NLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372
L + DK+ +A+ E E ++ R FE I ++ +E++RF+++K+ D
Sbjct: 386 EARLLWANKPDKLQQAKDEIVEWESRVTQYERDFERISTVVRKEVIRFEKEKSRDFRNHV 445
Query: 373 HNFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ +A S
Sbjct: 446 IQYLETLLHSQQQLAKYWEAFLPEAKAIS 474
|
|
| UNIPROTKB|F1N399 SNX1 "Sorting nexin-1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 114/389 (29%), Positives = 198/389 (50%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK-- 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ V RR+SDF+ L ++L EK+
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKHFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 84 GIFIPPLPEKSAV--EKFRF------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + K + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYE-KLK 194
L+ +E + R T A L+++F +K +D V + ES+ +E KL+
Sbjct: 265 LEKEE--LPRAVGTQT----LSGAGLLKMF----NKATDAVSKMTIKMNESDIWFEEKLQ 314
Query: 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMK 253
E E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 315 EVECE-EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEV 373
Query: 254 SEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETM-KLKEI 312
E + Q +A+ E L DY+R + ++A +R +++ + T+ K +E
Sbjct: 374 EEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQTTLQKKREA 433
Query: 313 NLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372
L + DK+ +A+ E E ++ R FE I ++ +E++RF+++K+ D
Sbjct: 434 EARLLWANKPDKLQQAKDEIVEWESRVTQYERDFERISTVVRKEVIRFEKEKSRDFRNHV 493
Query: 373 HNFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ +A S
Sbjct: 494 IQYLETLLHSQQQLAKYWEAFLPEAKAIS 522
|
|
| UNIPROTKB|Q05B62 SNX1 "Sorting nexin-1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 113/389 (29%), Positives = 197/389 (50%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK-- 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ V RR+SDF+ L ++L EK+
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKHFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 84 GIFIPPLPEKSAV--EKFRF------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + K + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYE-KLK 194
L+ +E + R T A L+++F VS + + + ES+ +E KL+
Sbjct: 265 LEKEE--LPRAVGTQT----LSGAGLLKMFNKATDAVSKMTIN----MNESDIWFEEKLQ 314
Query: 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMK 253
E E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 315 EVECE-EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEV 373
Query: 254 SEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETM-KLKEI 312
E + Q +A+ E L DY+R + ++A +R +++ + T+ K +E
Sbjct: 374 EEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQTTLQKKREA 433
Query: 313 NLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372
L + DK+ +A+ E E ++ R FE I ++ +E++RF+++K+ D
Sbjct: 434 EARLLWANKPDKLQQAKDEIVEWESRVTQYERDFERISTVVRKEVIRFEKEKSRDFRNHV 493
Query: 373 HNFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ +A S
Sbjct: 494 IQYLETLLHSQQQLAKYWEAFLPEAKAIS 522
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| UNIPROTKB|Q13596 SNX1 "Sorting nexin-1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 116/389 (29%), Positives = 197/389 (50%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK-- 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ + V RR+SDF+ L ++L EK+
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 84 GIFIPPLPEKSAV--EKFRF------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + K + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYE-KLK 194
L+ +E + R T A L+++F +K +D V + ES+ +E KL+
Sbjct: 265 LEKEE--LPRAVGTQT----LSGAGLLKMF----NKATDAVSKMTIKMNESDIWFEEKLQ 314
Query: 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMK 253
E E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 315 EVECE-EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEV 373
Query: 254 SEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAETMKLKEI 312
E + Q +A+ E L DY+R + ++A +R + R Q A K +E
Sbjct: 374 EEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREA 433
Query: 313 NLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372
L + DK+ +A+ E E ++ R FE I ++ +E++RF+++K+ D
Sbjct: 434 EARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHV 493
Query: 373 HNFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ +A S
Sbjct: 494 IKYLETLLYSQQQLAKYWEAFLPEAKAIS 522
|
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| UNIPROTKB|F1S0A3 SNX1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 116/389 (29%), Positives = 197/389 (50%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK-- 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ + V RR+SDF+ L ++L EK+
Sbjct: 92 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFSVKRRFSDFLGLYEKLSEKHSQN 151
Query: 84 GIFIPPLPEKSAV--EKFRF------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + K + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 152 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMVQDPDVREF 211
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYE-KLK 194
L+ +E + R T A L+++F +K +D V + ES+ +E KL+
Sbjct: 212 LEKEE--LPRAVGTQT----LSGAGLLKMF----NKATDAVSKMTIKMNESDIWFEEKLQ 261
Query: 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMK 253
E E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 262 EVECE-EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEV 320
Query: 254 SEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAETMKLKEI 312
E + Q +A+ E L DY+R + ++A +R + R Q A K +E
Sbjct: 321 EEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREA 380
Query: 313 NLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372
L + DK+ +A+ E E ++ R FE I ++ +E++RF+++K+ D
Sbjct: 381 EARLLWANKPDKLQQAKDEIIEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHV 440
Query: 373 HNFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ +A S
Sbjct: 441 IKYLETLLYSQQQLAKYWEAFLPEAKAIS 469
|
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| UNIPROTKB|F1MZN7 SNX2 "Sorting nexin-2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 114/387 (29%), Positives = 192/387 (49%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK-- 83
+ + V+DP K+G+G+ AY++YRV TKT+ + E V RR+SDF+ L +L KY
Sbjct: 142 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHV 201
Query: 84 GIFIPPLPEKSAV--EKFRF------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS V K + S EF+E RR L+ ++ R HP L Q DL+ F
Sbjct: 202 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 261
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKH 195
L E+ E R+ +T A ++++ +K +D V + ES+ +E+ +
Sbjct: 262 L----ESSELPRAVNTQALSG--AGILRMV----NKAADAVNKMTIKMNESDAWFEEKQQ 311
Query: 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKS 254
L+ L + LV +EL + + F K+A +LG E AL +A S+L
Sbjct: 312 QFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVE 371
Query: 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINL 314
E + Q +A F E L DY+R + ++K R + Q+ E A+ LK+
Sbjct: 372 EKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRVKCW-QKWEDAQITLLKKRET 430
Query: 315 D-KLMLT-RSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372
+ K+M+ + DK+ +A+ E +E +A+ + R FE I + + +E+ RF++++ D
Sbjct: 431 EAKMMVANKPDKIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVI 490
Query: 373 HNFSKGQARLASSIADAWRTLLPKLEA 399
+ + + + W LP+ +A
Sbjct: 491 IKYLESLVQTQQQLIKYWEAFLPEAKA 517
|
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| UNIPROTKB|Q4R503 SNX1 "Sorting nexin-1" [Macaca fascicularis (taxid:9541)] | Back alignment and assigned GO terms |
|---|
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 116/389 (29%), Positives = 197/389 (50%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK-- 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ + V RR+SDF+ L ++L EK+
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 84 GIFIPPLPEKSAV--EKFRF------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + K + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREF 264
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYE-KLK 194
L+ +E + R T A L+++F +K +D V + ES+ +E KL+
Sbjct: 265 LEKEE--LPRAVGTQT----LSGAGLLKMF----NKATDAVSKMTIKMNESDIWFEEKLQ 314
Query: 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMK 253
E E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 315 EVECE-EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEV 373
Query: 254 SEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAETMKLKEI 312
E + Q +A+ E L DY+R + ++A +R + R Q A K +E
Sbjct: 374 EEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREA 433
Query: 313 NLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372
L + DK+ +A+ E E ++ R FE I ++ +E++RF+++K+ D
Sbjct: 434 EARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVMRFEKEKSKDFKNHV 493
Query: 373 HNFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ +A S
Sbjct: 494 IKYLETLLYSQQQLAKYWEAFLPEAKAIS 522
|
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| UNIPROTKB|Q5RFP8 SNX1 "Sorting nexin-1" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 116/389 (29%), Positives = 196/389 (50%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK-- 83
L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ + V RR+SDF+ L ++L EK+
Sbjct: 145 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQN 204
Query: 84 GIFIPPLPEKSAV--EKFRF------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + K + SAEF+E RR L+ ++ RI +HP + Q D++ F
Sbjct: 205 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYIQRIVNHPTMLQDPDVREF 264
Query: 136 LQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYE-KLK 194
L+ +E + R T A L ++F +K +D V + ES+ +E KL+
Sbjct: 265 LEKEE--LPRAVGTQT----LSGAGLPKMF----NKATDAVSKMTIKMNESDIWFEEKLQ 314
Query: 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMK 253
E E L + LV +EL + + F K+ +LG+ E + AL +A S+L
Sbjct: 315 EVECE-EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEV 373
Query: 254 SEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAF-RQQCELAETMKLKEI 312
E + Q +A+ E L DY+R + ++A +R + R Q A K +E
Sbjct: 374 EEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREA 433
Query: 313 NLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAF 372
L + DK+ +A+ E E ++ R FE I ++ +E++RF+++K+ D
Sbjct: 434 EARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHV 493
Query: 373 HNFSKGQARLASSIADAWRTLLPKLEACS 401
+ + +A W LP+ +A S
Sbjct: 494 IKYLETLLYSQQQLAKYWEAFLPEAKAIS 522
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FG38 | SNX1_ARATH | No assigned EC number | 0.8333 | 0.9950 | 0.9975 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00021573001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (400 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 403 | |||
| cd06859 | 114 | cd06859, PX_SNX1_2_like, The phosphoinositide bind | 1e-61 | |
| cd07596 | 218 | cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) do | 2e-51 | |
| cd06860 | 116 | cd06860, PX_SNX7_30_like, The phosphoinositide bin | 1e-35 | |
| cd06863 | 118 | cd06863, PX_Atg24p, The phosphoinositide binding P | 5e-33 | |
| cd06861 | 112 | cd06861, PX_Vps5p, The phosphoinositide binding Ph | 2e-32 | |
| cd06865 | 120 | cd06865, PX_SNX_like, The phosphoinositide binding | 9e-28 | |
| cd07284 | 116 | cd07284, PX_SNX7, The phosphoinositide binding Pho | 3e-27 | |
| cd06093 | 106 | cd06093, PX_domain, The Phox Homology domain, a ph | 3e-27 | |
| pfam09325 | 236 | pfam09325, Vps5, Vps5 C terminal like | 9e-26 | |
| pfam00787 | 109 | pfam00787, PX, PX domain | 2e-25 | |
| cd07283 | 116 | cd07283, PX_SNX30, The phosphoinositide binding Ph | 6e-25 | |
| cd06862 | 125 | cd06862, PX_SNX9_18_like, The phosphoinositide bin | 1e-24 | |
| cd06894 | 123 | cd06894, PX_SNX3_like, The phosphoinositide bindin | 2e-24 | |
| cd07281 | 124 | cd07281, PX_SNX1, The phosphoinositide binding Pho | 3e-23 | |
| smart00312 | 105 | smart00312, PX, PhoX homologous domain, present in | 5e-23 | |
| cd07282 | 124 | cd07282, PX_SNX2, The phosphoinositide binding Pho | 2e-21 | |
| cd07294 | 132 | cd07294, PX_SNX12, The phosphoinositide binding Ph | 2e-21 | |
| cd07293 | 123 | cd07293, PX_SNX3, The phosphoinositide binding Pho | 1e-20 | |
| COG5391 | 524 | COG5391, COG5391, Phox homology (PX) domain protei | 8e-20 | |
| cd07295 | 116 | cd07295, PX_Grd19, The phosphoinositide binding Ph | 2e-19 | |
| cd06864 | 129 | cd06864, PX_SNX4, The phosphoinositide binding Pho | 5e-18 | |
| cd07280 | 120 | cd07280, PX_YPT35, The phosphoinositide binding Ph | 4e-17 | |
| cd06866 | 105 | cd06866, PX_SNX8_Mvp1p_like, The phosphoinositide | 5e-17 | |
| cd07286 | 127 | cd07286, PX_SNX18, The phosphoinositide binding Ph | 2e-15 | |
| cd07623 | 224 | cd07623, BAR_SNX1_2, The Bin/Amphiphysin/Rvs (BAR) | 3e-15 | |
| cd06898 | 113 | cd06898, PX_SNX10, The phosphoinositide binding Ph | 2e-14 | |
| cd07664 | 234 | cd07664, BAR_SNX2, The Bin/Amphiphysin/Rvs (BAR) d | 1e-12 | |
| cd06867 | 112 | cd06867, PX_SNX41_42, The phosphoinositide binding | 2e-11 | |
| cd07285 | 126 | cd07285, PX_SNX9, The phosphoinositide binding Pho | 7e-11 | |
| cd06870 | 109 | cd06870, PX_CISK, The phosphoinositide binding Pho | 2e-10 | |
| cd07665 | 234 | cd07665, BAR_SNX1, The Bin/Amphiphysin/Rvs (BAR) d | 4e-10 | |
| cd07291 | 141 | cd07291, PX_SNX5, The phosphoinositide binding Pho | 6e-10 | |
| cd06892 | 141 | cd06892, PX_SNX5_like, The phosphoinositide bindin | 6e-10 | |
| cd07276 | 110 | cd07276, PX_SNX16, The phosphoinositide binding Ph | 1e-09 | |
| cd06897 | 108 | cd06897, PX_SNARE, The phosphoinositide binding Ph | 2e-09 | |
| cd07627 | 216 | cd07627, BAR_Vps5p, The Bin/Amphiphysin/Rvs (BAR) | 2e-09 | |
| cd06868 | 120 | cd06868, PX_HS1BP3, The phosphoinositide binding P | 7e-09 | |
| cd06871 | 120 | cd06871, PX_MONaKA, The phosphoinositide binding P | 2e-07 | |
| cd07622 | 201 | cd07622, BAR_SNX4, The Bin/Amphiphysin/Rvs (BAR) d | 2e-07 | |
| cd06881 | 117 | cd06881, PX_SNX15_like, The phosphoinositide bindi | 7e-07 | |
| cd06876 | 133 | cd06876, PX_MDM1p, The phosphoinositide binding Ph | 1e-06 | |
| cd06877 | 119 | cd06877, PX_SNX14, The phosphoinositide binding Ph | 1e-06 | |
| cd07287 | 118 | cd07287, PX_RPK118_like, The phosphoinositide bind | 7e-06 | |
| cd07292 | 141 | cd07292, PX_SNX6, The phosphoinositide binding Pho | 2e-05 | |
| cd06893 | 132 | cd06893, PX_SNX19, The phosphoinositide binding Ph | 1e-04 | |
| cd06869 | 119 | cd06869, PX_UP2_fungi, The phosphoinositide bindin | 2e-04 | |
| cd07288 | 118 | cd07288, PX_SNX15, The phosphoinositide binding Ph | 2e-04 | |
| cd07279 | 112 | cd07279, PX_SNX20_21_like, The phosphoinositide bi | 7e-04 | |
| cd06873 | 120 | cd06873, PX_SNX13, The phosphoinositide binding Ph | 8e-04 | |
| cd06891 | 140 | cd06891, PX_Vps17p, The phosphoinositide binding P | 0.003 | |
| cd07629 | 187 | cd07629, BAR_Atg20p, The Bin/Amphiphysin/Rvs (BAR) | 0.004 |
| >gnl|CDD|132769 cd06859, PX_SNX1_2_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2 | Back alignment and domain information |
|---|
Score = 193 bits (494), Expect = 1e-61
Identities = 61/114 (53%), Positives = 83/114 (72%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI 85
+SVTDPVK+G+G+ AY+ YRV TKTN P+++ E V+RRYSDF+WL +RL EKY G
Sbjct: 1 FEISVTDPVKVGDGMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGR 60
Query: 86 FIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139
+PP PEK AV +F+ EFIE RR L+ F+ RIA+HP L++ D + FL++D
Sbjct: 61 IVPPPPEKQAVGRFKVKFEFIEKRRAALERFLRRIAAHPVLRKDPDFRLFLESD 114
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. Length = 114 |
| >gnl|CDD|153280 cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 2e-51
Identities = 84/218 (38%), Positives = 128/218 (58%), Gaps = 6/218 (2%)
Query: 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDA-- 242
E + E+E+ K YI +LE L + K A RLVKR RELG +L +FGKA L CE +
Sbjct: 1 EEDQEFEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGG 60
Query: 243 -LGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQC 301
LG+A S+LG +E LS + +A+Q L+ EPLK+Y+R Q++K T+ +RA+A
Sbjct: 61 ELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQ 120
Query: 302 ELAETMKLKEINLDKLMLTRS---DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIV 358
L + + K+ L+KL KV E E E +E ++ E++ +R+E I + EE+
Sbjct: 121 SLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELK 180
Query: 359 RFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396
RF E++ D+ A F++ Q + A IA+AW +LLP+
Sbjct: 181 RFHEERARDLKAALKEFARLQVQYAEKIAEAWESLLPE 218
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 218 |
| >gnl|CDD|132770 cd06860, PX_SNX7_30_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30 | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 1e-35
Identities = 53/115 (46%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI 85
L ++V +P K ++ YI+YRV TKT E+ E V RRY DF+WLR +L E +
Sbjct: 1 LFITVDNPEKHVTTLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTH 60
Query: 86 FIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138
IPPLPEK +V+ RFS EF+ R + L F+NRI HP L +E LK FL A
Sbjct: 61 IIPPLPEKHSVKGLLDRFSPEFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTA 115
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, and SNX32. Both domains have been shown to determine the specific membrane-targeting of SNX1. The specific function of the sorting nexins in this subfamily has yet to be elucidated. Length = 116 |
| >gnl|CDD|132773 cd06863, PX_Atg24p, The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 5e-33
Identities = 52/115 (45%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 26 LSVSVTDPVK-LGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
L V+DP K L YISY + TKTN P + E V RRYSDFV+L + L +
Sbjct: 1 LECLVSDPQKELDGSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPA 60
Query: 85 IFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFL 136
+PPLP+K +E RFS EFI R Q L F+ RI+ HP L QS+ L FL
Sbjct: 61 CVVPPLPDKHRLEYITGDRFSPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFL 115
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Length = 118 |
| >gnl|CDD|132771 cd06861, PX_Vps5p, The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-32
Identities = 43/114 (37%), Positives = 67/114 (58%), Gaps = 2/114 (1%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI 85
++V DP K+G+ A+ Y V T+T P ++ V+RRY DF WL +L + G+
Sbjct: 1 FEITVGDPHKVGDLTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGV 60
Query: 86 FIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139
+PP PEK +V RF F+E RR L+ + +IA+HP LQ+ D + FL+++
Sbjct: 61 IVPPPPEKQSVG--RFDDNFVEQRRAALEKMLRKIANHPVLQKDPDFRLFLESE 112
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P). Similar to SNX1, Vps5p contains a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. Length = 112 |
| >gnl|CDD|132775 cd06865, PX_SNX_like, The phosphoinositide binding Phox Homology domain of SNX-like proteins | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 9e-28
Identities = 54/118 (45%), Positives = 73/118 (61%), Gaps = 7/118 (5%)
Query: 28 VSVTDPVKLGN------GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEK 81
++V+DP K G YISY+V T+TN P Y E V RR+ D V L DRL E
Sbjct: 2 ITVSDPKKEQEPSRVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEA 61
Query: 82 YKGIFIPPLPEKSAVE-KFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138
Y+G F+PP P+KS VE + SAEFIE RR L+ ++NR+A+HP + S++L+ FL
Sbjct: 62 YRGAFVPPRPDKSVVESQVMQSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL 119
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architecture as a subfamily of sorting nexins, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. The PX-BAR structural unit is known to determine specific membrane localization. Length = 120 |
| >gnl|CDD|132817 cd07284, PX_SNX7, The phosphoinositide binding Phox Homology domain of Sorting Nexin 7 | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 3e-27
Identities = 51/115 (44%), Positives = 73/115 (63%), Gaps = 2/115 (1%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI 85
+ ++V +P ++ +I+YRV+TKT+ E+ E V RRY DF+WL+ RL E + +
Sbjct: 1 IFITVDEPESHVTAIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTL 60
Query: 86 FIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138
IPPLPEK ++ RF+ +FIE RR+ L F+NRIA HP L +ED K FL A
Sbjct: 61 IIPPLPEKFVMKGMVERFNEDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTA 115
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30, and SNX32. Both domains have been shown to determine the specific membrane-targeting of SNX1. The specific function of SNX7 has yet to be elucidated. Length = 116 |
| >gnl|CDD|132768 cd06093, PX_domain, The Phox Homology domain, a phosphoinositide binding module | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-27
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query: 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIF 86
SVS+ D K+ +G + Y+ Y + T G E V RRYSDF L ++L +K+ G+
Sbjct: 1 SVSIPDYEKVKDGGKKYVVYIIEVTTQ----GGEEWTVYRRYSDFEELHEKLKKKFPGVI 56
Query: 87 IPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 137
+PPLP K EFIE RR+ L+ ++ + +HPEL+ SE+LK FL+
Sbjct: 57 LPPLPPKKLF--GNLDPEFIEERRKQLEQYLQSLLNHPELRNSEELKEFLE 105
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting. Length = 106 |
| >gnl|CDD|220180 pfam09325, Vps5, Vps5 C terminal like | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 9e-26
Identities = 58/231 (25%), Positives = 106/231 (45%), Gaps = 4/231 (1%)
Query: 170 SKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFG 229
K + V E +P +E + YI LE+ L + K LV + +EL + +F
Sbjct: 6 GKFTSSVSKSTYKFNEPDPWFEDKRQYIDSLESQLKKLYKALELLVNQRKELASATGEFA 65
Query: 230 KAAKLLGACE-GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKA 288
K+ +L + E L +A S+L E + L+R+A Q ++ E + +Y+R + S+KA
Sbjct: 66 KSLAMLASLELSTGLSRALSQLAEVEERIKELLERQALQDVLTLGETIDEYLRLIGSVKA 125
Query: 289 TIAERANAFRQQCELAETMKLKEINLDKLMLT---RSDKVGEAEIEYKELKAESEDSTRR 345
+R A++Q + + K L KL R DK+ +A+ E E + + + + +
Sbjct: 126 VFNQRVKAWQQWQNAEQDLSKKRAQLAKLKGAGKSRQDKLQQAKKEVDEAERKVQQAKKE 185
Query: 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396
FE I + +E+ RF+ ++ D + + + W T LP+
Sbjct: 186 FEDISETIKKELERFETERVDDFKNVLEIYLESAIESQKESIELWETFLPE 236
|
Vps5 is a sorting nexin that functions in membrane trafficking. This is the C terminal dimerisation domain. Length = 236 |
| >gnl|CDD|216119 pfam00787, PX, PX domain | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 2e-25
Identities = 53/116 (45%), Positives = 64/116 (55%), Gaps = 8/116 (6%)
Query: 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK 83
P L V V DP K Y Y V TKTN E+ V RRYSDF L +L K+
Sbjct: 2 PILQVVVVDPEK-SGKKHTYYLYEVTTKTNLKEWS-----VKRRYSDFEELHKQLLRKFP 55
Query: 84 GIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139
G IPPLP K RFS EFIE RR+GL+ ++ R+ HPEL SE + FL++D
Sbjct: 56 GRIIPPLPPKKLF--GRFSEEFIEKRRKGLEEYLQRLLQHPELSNSEVVLEFLESD 109
|
PX domains bind to phosphoinositides. Length = 109 |
| >gnl|CDD|132816 cd07283, PX_SNX30, The phosphoinositide binding Phox Homology domain of Sorting Nexin 30 | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 6e-25
Identities = 57/115 (49%), Positives = 69/115 (60%), Gaps = 2/115 (1%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI 85
L V+V DP K ++ YI+YRV TKT E+ PE V RRY DF WLR++L E
Sbjct: 1 LFVTVDDPKKHVCTMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTH 60
Query: 86 FIPPLPEKSAVEKF--RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138
IPPLPEK V+ RFS EF+E RR+ LD F+ RIA HP L +E FL A
Sbjct: 61 LIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTA 115
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32. Both domains have been shown to determine the specific membrane-targeting of SNX1. The specific function of SNX30 has yet to be elucidated. Length = 116 |
| >gnl|CDD|132772 cd06862, PX_SNX9_18_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18 | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 1e-24
Identities = 51/118 (43%), Positives = 69/118 (58%), Gaps = 11/118 (9%)
Query: 27 SVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
+VT+P K G++++I+Y+ IT T+ V RRY F WL +RL EKY
Sbjct: 2 HCTVTNPKKESKFKGLKSFIAYQ-ITPTH------TNVTVSRRYKHFDWLYERLVEKYSC 54
Query: 85 IFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEET 142
I IPPLPEK RF +FIE RR+ L+L++NR+A HP L QSE + FL +E
Sbjct: 55 IAIPPLPEKQVTG--RFEEDFIEKRRERLELWMNRLARHPVLSQSEVFRHFLTCTDEK 110
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. Length = 125 |
| >gnl|CDD|132804 cd06894, PX_SNX3_like, The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 2e-24
Identities = 48/121 (39%), Positives = 66/121 (54%), Gaps = 8/121 (6%)
Query: 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
+L + V +P G G + + Y V +TN P ++ E V RRYSDF WLR L E+
Sbjct: 1 FLEIDVVNPQTHGVGKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSEL-ERDSK 59
Query: 85 IFIPPLPEKSAVEKF-------RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 137
I +PPLP K+ + F EFIE RR+GL+ F+N++A HP Q + L FLQ
Sbjct: 60 IVVPPLPGKALKRQLPFRGDDGIFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQ 119
Query: 138 A 138
Sbjct: 120 E 120
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer. Length = 123 |
| >gnl|CDD|132814 cd07281, PX_SNX1, The phosphoinositide binding Phox Homology domain of Sorting Nexin 1 | Back alignment and domain information |
|---|
Score = 93.6 bits (232), Expect = 3e-23
Identities = 50/124 (40%), Positives = 76/124 (61%), Gaps = 10/124 (8%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY--K 83
L VS+TDP K+G+G+ AY+ Y+V T+T+ ++ V RR+SDF+ L ++L EK+
Sbjct: 1 LKVSITDPEKIGDGMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQN 60
Query: 84 GIFIPPLPEKSAVEKFRF--------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS + + SAEF+E RR L+ ++ RI SHP L Q D++ F
Sbjct: 61 GFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREF 120
Query: 136 LQAD 139
L+ +
Sbjct: 121 LEKE 124
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. SNX1 contains a Bin/Amphiphysin/Rvs (BAR) domain C-terminal to the PX domain. The PX domain of SNX1 specifically binds phosphatidylinositol-3-phosphate (PI3P) and PI(3,5)P2, while the BAR domain detects membrane curvature. Both domains help determine the specific membrane-targeting of SNX1, which is localized to a microdomain in early endosomes where it regulates cation-independent mannose-6-phosphate receptor retrieval to the trans Golgi network. Length = 124 |
| >gnl|CDD|214610 smart00312, PX, PhoX homologous domain, present in p47phox and p40phox | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 5e-23
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 30 VTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPP 89
V +P K+G+G Y + TKT E+ V RRYSDF+ L +L + + +PP
Sbjct: 1 VVEPEKIGDGKHYYYVIEIETKTGLEEWT-----VSRRYSDFLELHSKLKKHFPRSILPP 55
Query: 90 LPEK-SAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQ 137
LP K FS EFIE RR+GL+ ++ + +HPEL SE + FL+
Sbjct: 56 LPGKKLFGRLNNFSEEFIEKRRRGLEKYLQSLLNHPELINHSEVVLEFLE 105
|
Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform. Length = 105 |
| >gnl|CDD|132815 cd07282, PX_SNX2, The phosphoinositide binding Phox Homology domain of Sorting Nexin 2 | Back alignment and domain information |
|---|
Score = 89.0 bits (220), Expect = 2e-21
Identities = 49/123 (39%), Positives = 71/123 (57%), Gaps = 10/123 (8%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK-- 83
+ + V+DP K+G+G+ AY++YRV TKT+ + E V RR+SDF+ L +L KY
Sbjct: 1 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHV 60
Query: 84 GIFIPPLPEKSAVEKFRF--------SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTF 135
G +PP PEKS V + S EF+E RR L+ ++ R HP L Q DL+ F
Sbjct: 61 GYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQF 120
Query: 136 LQA 138
L++
Sbjct: 121 LES 123
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. Similar to SNX1, SNX2 contains a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. The PX domain of SNX2 preferentially binds phosphatidylinositol-3-phosphate (PI3P), but not PI(3,4,5)P3. Studies on mice deficient with SNX1 and/or SNX2 suggest that they provide an essential function in embryogenesis and are functionally redundant. Length = 124 |
| >gnl|CDD|132827 cd07294, PX_SNX12, The phosphoinositide binding Phox Homology domain of Sorting Nexin 12 | Back alignment and domain information |
|---|
Score = 88.9 bits (220), Expect = 2e-21
Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 10/128 (7%)
Query: 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
+L + + +P +G G + +Y V +TN P ++ E V RRYSDF WL++ L E+
Sbjct: 3 FLEIDIFNPQTVGVGRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNEL-ERDSK 61
Query: 85 IFIPPLPEKSAVEK--FR-----FSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 137
I +PPLP K+ + FR F FIE RRQGL+ F+N+IA HP Q L FLQ
Sbjct: 62 IVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQ 121
Query: 138 ADEETMER 145
+ET++R
Sbjct: 122 --DETIDR 127
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated. Length = 132 |
| >gnl|CDD|132826 cd07293, PX_SNX3, The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 1e-20
Identities = 47/120 (39%), Positives = 67/120 (55%), Gaps = 8/120 (6%)
Query: 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
+L + VT+P +G G + +Y + KTN P ++ E V RRYSDF WLR L E+
Sbjct: 1 FLEIDVTNPQTVGVGRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSEL-ERESK 59
Query: 85 IFIPPLPEKSAVEKFRFSAE-------FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 137
+ +PPLP K+ + F + FIE R+QGL+ F+N++A HP Q L FLQ
Sbjct: 60 VVVPPLPGKALFRQLPFRGDDGIFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQ 119
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer. SNX3 is required for the formation of multivesicular bodies, which function as transport intermediates to late endosomes. It also promotes cell surface expression of the amiloride-sensitive epithelial Na+ channel (ENaC), which is critical in sodium homeostasis and maintenance of extracellular fluid volume. Length = 123 |
| >gnl|CDD|227680 COG5391, COG5391, Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only] | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 8e-20
Identities = 76/431 (17%), Positives = 154/431 (35%), Gaps = 60/431 (13%)
Query: 8 RSASGSSQSPRSPSSQPY-LSVSVTDPVKLGNGVQA---YISYRVITKTNFPEYQG---P 60
S S + Y +S +V++P L V + + SY +IT TN P +Q
Sbjct: 112 LPTSLQPPLSTSHTILDYFISSTVSNPQSLTLLVDSRDKHTSYEIITVTNLPSFQLRESR 171
Query: 61 EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFV 117
+V RRYSDF L L + IPPLP K + ++ RFS EFIE RRQ L F+
Sbjct: 172 PLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYYGDRFSDEFIEERRQSLQNFL 231
Query: 118 NRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVL 177
R+++HP L ++ K ++ L ++ +S + + L
Sbjct: 232 RRVSTHPLLSNYKNSK-------------------SWESHSTLLSSFIENRKSVPTPLSL 272
Query: 178 GKEKPVEESNPEYEKLKHYIFELENHLA-------EAQKHAYRLVKRHRELGESLSDF-- 228
+E + E ++L + +++ + + L ESL++
Sbjct: 273 DLTSTTQELDMERKELNESTSKAIHNILSIFSLFEKILIQLESEEESLTRLLESLNNLLL 332
Query: 229 ----------GKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAH-QLLMNFEEPLK 277
+ + + + + +A + E L+ + L+ + L+
Sbjct: 333 LVLNFSGVFAKRLEQNQNSILNEGVVQAETLRSSLKELLTQLQDEIKSRESLILTDSNLE 392
Query: 278 DYVRAVQSIKATIAERANAF-RQQCELAETMKLKEINLDKLMLTRSDKVGEAEI------ 330
++ Q+ +++ + R D V E
Sbjct: 393 KLTDQNLEDVEELSRSLRKNSSQRAVVSQQPEGLTSFSKLSYKLR-DFVQEKSRSKSIES 451
Query: 331 ---EYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIA 387
+ ++L+ + + + + I + E+ F + D+ + + A
Sbjct: 452 LQQDKEKLEEQLAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEENL 511
Query: 388 DAWRTLLPKLE 398
+ W+++ +L+
Sbjct: 512 EIWKSVKEQLD 522
|
Length = 524 |
| >gnl|CDD|132828 cd07295, PX_Grd19, The phosphoinositide binding Phox Homology domain of fungal Grd19 | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 2e-19
Identities = 47/117 (40%), Positives = 65/117 (55%), Gaps = 3/117 (2%)
Query: 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG 84
+L + V +P G G + Y ++ +TN P ++ V RRYSDF + RD L +
Sbjct: 1 FLEIEVRNPKTHGIGRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPR 60
Query: 85 IFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQADE 140
+ IPPLP K + RFS E IE RRQGL+ F+ +A HP LQ S+ L FLQ +
Sbjct: 61 VMIPPLPGK--IFTNRFSDEVIEERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDPK 115
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer. Length = 116 |
| >gnl|CDD|132774 cd06864, PX_SNX4, The phosphoinositide binding Phox Homology domain of Sorting Nexin 4 | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 5e-18
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 26 LSVSVTDPVKLGNGV--------QAYISYRVITKTNFPEYQGPE-KIVIRRYSDFVWLRD 76
+ ++VT+ K G Y+ I + E + + RRYS+F LR+
Sbjct: 1 MEITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRN 60
Query: 77 RLFEKYKGIFIPPLPEKSAVEKF------RFSAEFIEMRRQGLDLFVNRIASHPELQQSE 130
L Y + +PPLPEK A+ + F +F+E RR GL+ F+ R+A HPEL Q +
Sbjct: 61 YLVVTYPYVIVPPLPEKRAMFMWQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDK 120
Query: 131 DLKTFLQ 137
FL
Sbjct: 121 IFLEFLT 127
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and the long form of the leptin receptor. Length = 129 |
| >gnl|CDD|132813 cd07280, PX_YPT35, The phosphoinositide binding Phox Homology domain of the fungal protein YPT35 | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 4e-17
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 42 AYISYRVITKTNFPEYQGPEKIVIR-RYSDFVWLRDRLFEKY---KGIFIPPLPEKS--A 95
AY+ +++ +T IV RYS+FV LR+ L +++ K IP LP K
Sbjct: 21 AYVVWKITIETK---DLIGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWY 77
Query: 96 VEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFL 136
+ + ++E RR+GL F+N + +P S +K FL
Sbjct: 78 DSRVNLNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFL 118
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway. Length = 120 |
| >gnl|CDD|132776 cd06866, PX_SNX8_Mvp1p_like, The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 5e-17
Identities = 35/78 (44%), Positives = 48/78 (61%), Gaps = 6/78 (7%)
Query: 61 EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSA--EFIEMRRQGLDLFVN 118
+ V RRYSDFVWL + L ++Y +P LP K + SA EF+E RR+GL F+N
Sbjct: 29 KSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPK----RIGGSADREFLEARRRGLSRFLN 84
Query: 119 RIASHPELQQSEDLKTFL 136
+A HP L + E ++TFL
Sbjct: 85 LVARHPVLSEDELVRTFL 102
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. Length = 105 |
| >gnl|CDD|132819 cd07286, PX_SNX18, The phosphoinositide binding Phox Homology domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Score = 72.0 bits (176), Expect = 2e-15
Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 11/113 (9%)
Query: 26 LSVSVTDPVKLGN--GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK 83
++ DP K G+++YISY+++ P + G + V RRY F WL RL EK+
Sbjct: 1 FQCTIDDPTKQTKFKGMKSYISYKLV-----PSHTGLQ--VHRRYKHFDWLYARLAEKFP 53
Query: 84 GIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFL 136
I +P +PEK A RF +FI RR+GL +++ + SHP L + + + FL
Sbjct: 54 VISVPHIPEKQATG--RFEEDFISKRRKGLIWWMDHMCSHPVLARCDAFQHFL 104
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. Length = 127 |
| >gnl|CDD|153307 cd07623, BAR_SNX1_2, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2 | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-15
Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 6/219 (2%)
Query: 182 PVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-G 240
++E++ +E+ + I L+ L + LV +EL + F K+A +L CE
Sbjct: 6 KMDETDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEH 65
Query: 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQ 300
+L +A S+L E + +A E LKDY+ + +IK ER + Q
Sbjct: 66 TSLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVW-QN 124
Query: 301 CELAETM--KLKEINLDKLMLT-RSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEI 357
+ A+ K +E KL L+ R+DK+ +A+ E KE +A+ + + FE I + + +EI
Sbjct: 125 WQNAQQTLTKKRE-AKAKLELSGRTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEI 183
Query: 358 VRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396
RF++ + D + + + W LP+
Sbjct: 184 ERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLPE 222
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 224 |
| >gnl|CDD|132808 cd06898, PX_SNX10, The phosphoinositide binding Phox Homology domain of Sorting Nexin 10 | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-14
Identities = 41/114 (35%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 27 SVSVTDP-VKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI 85
SV V DP + +Y Y + TN + V RRYS+FVWLR+RL + I
Sbjct: 1 SVEVRDPRTHKEDDWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLI 60
Query: 86 FIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139
+P LP K+ +F + FIE R+QGL F+ ++ P L L FLQ
Sbjct: 61 QLPSLPPKNLFGRFN-NEGFIEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQTQ 113
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells. Length = 113 |
| >gnl|CDD|153348 cd07664, BAR_SNX2, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2 | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 1e-12
Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 2/229 (0%)
Query: 170 SKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFG 229
+K +D V + ES+ +E+ + L+ L + LV +EL + + F
Sbjct: 4 NKAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFA 63
Query: 230 KAAKLLGACEG-DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKA 288
K+A +LG E AL +A S+L E + Q +A F E L DY+R + ++K
Sbjct: 64 KSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKG 123
Query: 289 TIAERANAFRQQCELAETMKLKEINLDKLMLT-RSDKVGEAEIEYKELKAESEDSTRRFE 347
+R +++ + T++ K KL + DK+ +A+ E KE +A+ + R FE
Sbjct: 124 VFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIKEWEAKVQQGERDFE 183
Query: 348 TIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396
I + + +E+ RF++++ D + + + + W LP+
Sbjct: 184 QISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPE 232
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 234 |
| >gnl|CDD|132777 cd06867, PX_SNX41_42, The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42 | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-11
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 41 QAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFR 100
+YI Y + + V RRYS+F LR L Y + IPP+PEK +++ +
Sbjct: 16 GSYIVYVIRLGGS---------EVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYA 66
Query: 101 FS-------AEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFL 136
A+ IE R++ L F+NR HP L+ + FL
Sbjct: 67 KKPSKAKNDAKIIERRKRMLQRFLNRCLQHPILRNDIVFQKFL 109
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back to the late Golgi in yeast. Length = 112 |
| >gnl|CDD|132818 cd07285, PX_SNX9, The phosphoinositide binding Phox Homology domain of Sorting Nexin 9 | Back alignment and domain information |
|---|
Score = 58.9 bits (142), Expect = 7e-11
Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 30 VTDPVKLGN--GVQAYISYRVI-TKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK-GI 85
V DP K G+++YI Y++ T TN V RY F WL +RL K+ I
Sbjct: 5 VADPRKGSKMYGLKSYIEYQLTPTNTNRS--------VNHRYKHFDWLYERLLVKFGLAI 56
Query: 86 FIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141
IP LP+K RF EFI+MR + L ++ R+ HP + +SE + FL +E
Sbjct: 57 PIPSLPDKQVTG--RFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDE 110
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. Through its SH3 domain, SNX9 binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis. Its array of interacting partners suggests that SNX9 functions at the interface between endocytosis and actin cytoskeletal organization. Length = 126 |
| >gnl|CDD|132780 cd06870, PX_CISK, The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-10
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 64 VIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF---RFSAEFIEMRRQGLDLFVNRI 120
V RRY++F D+L+E K F P K ++ F +FI+ RR GLD F+ R+
Sbjct: 36 VFRRYAEF----DKLYESLKKQF-PASNLKIPGKRLFGNNFDPDFIKQRRAGLDEFIQRL 90
Query: 121 ASHPELQQSEDLKTFLQAD 139
S P+L D++ FLQ D
Sbjct: 91 VSDPKLLNHPDVRAFLQMD 109
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity. Length = 109 |
| >gnl|CDD|153349 cd07665, BAR_SNX1, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1 | Back alignment and domain information |
|---|
Score = 59.3 bits (143), Expect = 4e-10
Identities = 54/230 (23%), Positives = 103/230 (44%), Gaps = 4/230 (1%)
Query: 170 SKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFG 229
+K +D V + ES+ +E+ + E L + LV +EL + + F
Sbjct: 4 NKATDAVSKMTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFA 63
Query: 230 KAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKA 288
K+ +LG+ E + AL +A S+L E + Q +A+ E L DY+R + +++
Sbjct: 64 KSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRG 123
Query: 289 TIAERANAFRQQCELAETM--KLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRF 346
+R + Q+ + A+ M K +E L + DK+ +A+ E E ++ R F
Sbjct: 124 AFDQRMKTW-QRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIAEWESRVTQYERDF 182
Query: 347 ETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396
E I + +E++RF+++K+ D + + + W LP+
Sbjct: 183 ERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFLPE 232
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. SNX1 is localized to a microdomain in early endosomes where it regulates cation-independent mannose-6-phosphate receptor retrieval to the trans Golgi network. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 234 |
| >gnl|CDD|132824 cd07291, PX_SNX5, The phosphoinositide binding Phox Homology domain of Sorting Nexin 5 | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 6e-10
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 29/125 (23%)
Query: 44 ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE--KYKGIFIPPLPEK-------- 93
+ + V TKT P +Q P+ V R++ DF+WL D L E Y G+ IPP P K
Sbjct: 17 VKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPRE 76
Query: 94 ---------SAVEKFRFS-------AEFIEMRRQGL---DLFVNRIASHPELQQSEDLKT 134
++ K F+ AE++ + ++ + ++F+ R++SHP L + +
Sbjct: 77 KMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHI 136
Query: 135 FLQAD 139
FL+ D
Sbjct: 137 FLEYD 141
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It also binds the Fanconi anaemia complementation group A protein (FANCA). SNX5 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of some SNXs. The PX domain of SNX5 binds phosphatidylinositol-3-phosphate (PI3P) and PI(3,4)P2. SNX5 is localized to a subdomain of early endosome and is recruited to the plasma membrane following EGF stimulation and elevation of PI(3,4)P2 levels. Length = 141 |
| >gnl|CDD|132802 cd06892, PX_SNX5_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6 | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 6e-10
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 29/123 (23%)
Query: 44 ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE--KYKGIFIPPLP---------- 91
+ + V TKT P +Q PE V R++ +FVWL D L E Y G+ IPP P
Sbjct: 17 VKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASRE 76
Query: 92 --------------EKSAVEKFRFSAEFIEMRRQGL---DLFVNRIASHPELQQSEDLKT 134
E+ K AE++ + ++ + ++F+ R+ASHP L+ + +
Sbjct: 77 KLQKLGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRV 136
Query: 135 FLQ 137
FL+
Sbjct: 137 FLE 139
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of some SNXs. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. Length = 141 |
| >gnl|CDD|132809 cd07276, PX_SNX16, The phosphoinositide binding Phox Homology domain of Sorting Nexin 16 | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-09
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 63 IVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIAS 122
V RRY+DFV L D+L + + G F LP K K F +F+E R+ GL FVN I +
Sbjct: 36 FVFRRYTDFVRLNDKLKQMFPG-FRLSLPPKRWF-KDNFDPDFLEERQLGLQAFVNNIMA 93
Query: 123 HPELQQSEDLKTFLQAD 139
H ++ + + ++ F D
Sbjct: 94 HKDIAKCKLVREFFCLD 110
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking. Length = 110 |
| >gnl|CDD|132807 cd06897, PX_SNARE, The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 43 YISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIP-PLPEKSAVEKFRF 101
Y Y + + V RRYS+FV L +L E GI P PLP KS
Sbjct: 15 YTVYNIQVR-----LPLRSYTVSRRYSEFVALHKQL-ESEVGIEPPYPLPPKSWFLSTSS 68
Query: 102 SAEFIEMRRQGLDLFVNRIASHPE--LQQSEDLKTFLQ 137
+ + +E RR GL+ F+ + + + + S +K FL
Sbjct: 69 NPKLVEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLN 106
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. Length = 108 |
| >gnl|CDD|153311 cd07627, BAR_Vps5p, The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 44/195 (22%), Positives = 90/195 (46%), Gaps = 20/195 (10%)
Query: 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHR-ELGESLSDFGKAAKLLGACEGDAL 243
E + + + K Y+ LE+ L + K + LV R EL + +F + + L + E L
Sbjct: 1 EPDEWFIEKKQYLDSLESQLKQLYK-SLELVSSQRKELASATEEFAETLEALSSLE---L 56
Query: 244 GK-------AFSELGMKS-EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN 295
K A +E+ + E+L + ++ L + +E Y+R++ S++A A+R
Sbjct: 57 SKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVTLDE----YIRSIGSVRAAFAQRQK 112
Query: 296 AFRQQCELAETMKLKEINLDKLM---LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRL 352
++ + K+ L+KL T+ +K+ E +E + + + + FE + L
Sbjct: 113 LWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSEL 172
Query: 353 MNEEIVRFQEQKTLD 367
+ E+ RF+ ++ D
Sbjct: 173 IKSELERFERERVED 187
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 216 |
| >gnl|CDD|132778 cd06868, PX_HS1BP3, The phosphoinositide binding Phox Homology domain of HS1BP3 | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 7e-09
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 12/111 (10%)
Query: 37 GNGVQAYISYRVITKTNFPEYQGPEKI--------VIRRYSDFVWLRDRLFEKYKGIFIP 88
G ++ Y+++ T ++ + V ++YS+F L +L EKY G +P
Sbjct: 14 GKTSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILP 73
Query: 89 PLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139
PLP K S I RR + F+ I+ +L +L FL
Sbjct: 74 PLPRK----ALFVSESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGVK 120
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. Length = 120 |
| >gnl|CDD|132781 cd06871, PX_MONaKA, The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-07
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 64 VIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASH 123
VIRRY+DF L L + GI +P LP K + EFI R+QGL ++N I +
Sbjct: 40 VIRRYNDFDLLNASL--QISGISLP-LPPKKLIGNMD--REFIAERQQGLQNYLNVILMN 94
Query: 124 PELQQSEDLKTFL 136
P L +K FL
Sbjct: 95 PILASCLPVKKFL 107
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. Length = 120 |
| >gnl|CDD|153306 cd07622, BAR_SNX4, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4 | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 47/215 (21%), Positives = 86/215 (40%), Gaps = 37/215 (17%)
Query: 183 VEESNPEYEKLKHYIFELENHL-------AEAQKHAYRLVKRHRELGESLSDFGKAAKLL 235
+ + +E LK+Y EL+ +L A + Y + K H G S++ K +
Sbjct: 9 LRNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEM 68
Query: 236 GACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN 295
G D L KA + + ++ L+ E + LK+Y+ S++A + ++
Sbjct: 69 G----DGLQKAGHYMDSYAASIDNGLEDEEL-----IADQLKEYLFFADSLRA-VCKKHE 118
Query: 296 AFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNE 355
+ E AE ++K + E KE K E + V+ E
Sbjct: 119 LLQYDLEKAEDAL-------------ANKKQQGEEAVKEAKDELNE-------FVKKALE 158
Query: 356 EIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAW 390
++ RF++QK D+ +++K Q +LA W
Sbjct: 159 DVERFKKQKVRDLKEILISYAKLQIKLAKKGLQTW 193
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 201 |
| >gnl|CDD|132791 cd06881, PX_SNX15_like, The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 7e-07
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 9/116 (7%)
Query: 29 SVTDPVKLGNGVQAY-ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFI 87
+VTD + G Y I+ +V +++ PE E +V +RYSDF L L +K +++
Sbjct: 6 TVTDTRRHKKGYTEYKITSKVFSRSV-PEDV-SEVVVWKRYSDFKKLHRELSRLHKQLYL 63
Query: 88 ----PPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139
PP P+ RF A IE RRQ + ++ + +HP L QS + F +
Sbjct: 64 SGSFPPFPKGKYFG--RFDAAVIEERRQAILELLDFVGNHPALYQSSAFQQFFEEA 117
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily contain an additional C-terminal kinase domain, similar to human RPK118, which binds sphingosine kinase and the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of proteins such as PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 117 |
| >gnl|CDD|132786 cd06876, PX_MDM1p, The phosphoinositide binding Phox Homology domain of yeast MDM1p | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 63 IVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIAS 122
+V RRYS+F+ L L ++Y G+ P+K + +E RR+ L+ ++ +
Sbjct: 58 VVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKISLKYSKTLLVEERRKALEKYLQELLK 117
Query: 123 HPELQQSEDLKTFL 136
PE+ + E+ + FL
Sbjct: 118 IPEVCEDEEFRKFL 131
|
The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Length = 133 |
| >gnl|CDD|132787 cd06877, PX_SNX14, The phosphoinositide binding Phox Homology domain of Sorting Nexin 14 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 63 IVIRRYSDFVWLRDRLFEKYKGIFIP-PLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIA 121
V+RRY++F L +L E + G F PLP + S EF+E +R+ + F+ ++
Sbjct: 45 SVLRRYNEFYVLESKLTE-FHGEFPDAPLPSRRIFGPK--SYEFLESKREIFEEFLQKLL 101
Query: 122 SHPELQQSEDLKTFLQAD 139
PEL+ SE L FL +
Sbjct: 102 QKPELRGSELLYDFLSPN 119
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. Length = 119 |
| >gnl|CDD|132820 cd07287, PX_RPK118_like, The phosphoinositide binding Phox Homology domain of RPK118-like proteins | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 7e-06
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 29 SVTDPVKLGNGVQAY-ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIF- 86
+VTDP + G Y ++ R++++ N + Q E +V +RYSDF L L++ +K +
Sbjct: 6 TVTDPRRHPKGYTVYKVTARIVSRKNPEDVQ--EIVVWKRYSDFKKLHKDLWQIHKNLCR 63
Query: 87 ----IPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 137
PP + A RF IE RRQ + + A+ P L S L+ F +
Sbjct: 64 QSELFPPFAK--AKVFGRFDESVIEERRQCAEDLLQFSANIPALYNSSQLEDFFK 116
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Length = 118 |
| >gnl|CDD|132825 cd07292, PX_SNX6, The phosphoinositide binding Phox Homology domain of Sorting Nexin 6 | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-05
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 29/123 (23%)
Query: 44 ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEK--YKGIFIPPLPEKSAVEKFR- 100
+ + V TK++ P ++ E V+R++ +F+WL D E Y G IPP P + + R
Sbjct: 17 VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASRE 76
Query: 101 -----------------------FSAEFIEMRRQGL---DLFVNRIASHPELQQSEDLKT 134
AE++ + ++ + ++F+ R+A+HP L++ +
Sbjct: 77 KLQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHV 136
Query: 135 FLQ 137
FL+
Sbjct: 137 FLE 139
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays roles in enhancing the degradation of EGFR and in regulating the activity of Na,K-ATPase through its interaction with Translationally Controlled Tumor Protein (TCTP). SNX6 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of some SNXs. Length = 141 |
| >gnl|CDD|132803 cd06893, PX_SNX19, The phosphoinositide binding Phox Homology domain of Sorting Nexin 19 | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 1e-04
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 55 PEYQGPEKIVIRRYSDFVWLRDRLFEKYK----------GIFIPPLPEKSAVEKFRFSAE 104
E V RR+ +F+ L+ RL E K + LP + +
Sbjct: 44 SEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGPPKRLFDLPFGN------MDKD 97
Query: 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFL 136
IE RR L+ F+ ++ S PE+ SE+++ FL
Sbjct: 98 KIEARRGLLETFLRQLCSIPEISNSEEVQEFL 129
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found in type-1 diabetes. It inhibits the conversion of phosphatidylinositol-4,5-bisphosphate [PI(4,5)P2] to PI(3,4,5)P3, which leads in the decrease of protein phosphorylation in the Akt signaling pathway, resulting in apoptosis. SNX19 may also be implicated in coronary heart disease and thyroid oncocytic tumors. Length = 132 |
| >gnl|CDD|132779 cd06869, PX_UP2_fungi, The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 12/110 (10%)
Query: 32 DPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLP 91
K ++ Y I + + V RRYSDF L L +++ G +P LP
Sbjct: 20 SSKKAYFVNRSKHHYEFIIRVRREGEEYRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLP 79
Query: 92 EKS--AVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139
K EK R S L ++ + PE+ S L+ FL +D
Sbjct: 80 HKDKLPREKLRLS----------LRQYLRSLLKDPEVAHSSILQEFLTSD 119
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. Length = 119 |
| >gnl|CDD|132821 cd07288, PX_SNX15, The phosphoinositide binding Phox Homology domain of Sorting Nexin 15 | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 2e-04
Identities = 36/115 (31%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 29 SVTDPVKLGNGVQAY-ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIF- 86
SVTDP G Y ++ + I+K PE E +V +RYSD L L ++ +F
Sbjct: 6 SVTDPRTHPKGYTEYKVTAQFISKKQ-PE-DVKEVVVWKRYSDLKKLHGELAYTHRNLFR 63
Query: 87 ----IPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 137
PP P RF A IE RR + + + P L S LK F +
Sbjct: 64 RQEEFPPFPRAQVFG--RFEAAVIEERRNAAEAMLLFTVNIPALYNSPQLKEFFR 116
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Length = 118 |
| >gnl|CDD|132812 cd07279, PX_SNX20_21_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21 | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 7e-04
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 63 IVIRRYSDFVWLRDRLFEKYKGIFIP-PLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIA 121
+ RRYSDF+ L L +++ + P K + F S+E I R + + F+ I
Sbjct: 37 FIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLMGNF--SSELIAERSRAFEQFLGHIL 94
Query: 122 SHPELQQSEDLKTFLQAD 139
S P L+ S+ FLQ
Sbjct: 95 SIPNLRDSKAFLDFLQGP 112
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development. Length = 112 |
| >gnl|CDD|132783 cd06873, PX_SNX13, The phosphoinositide binding Phox Homology domain of Sorting Nexin 13 | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 8e-04
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 64 VIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFR-FSAEFIEMRRQGLDLFVNRIAS 122
V RRYSDF L RL EK+ + P K F F+E RR+ L+ ++ + +
Sbjct: 43 VYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKT---FNNLDRAFLEKRRKMLNQYLQSLLN 99
Query: 123 HPELQQSEDLKTFL 136
L + L+ +
Sbjct: 100 PEVLDANPGLQEIV 113
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, through the RGS domain. It preferentially binds phosphatidylinositol-3-phosphate (PI3P) through the PX domain and is localized in early endosomes. SNX13 is involved in endosomal sorting of EGFR into multivesicular bodies (MVB) for delivery to the lysosome. Length = 120 |
| >gnl|CDD|132801 cd06891, PX_Vps17p, The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 0.003
Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 18/146 (12%)
Query: 3 NTEQQRSASGSSQSPRSPSSQP---YLSVSVT--DPVKLGNGVQAYISYRVITKTNFPEY 57
+ + R S++ P + +L V VT + K + R TN P +
Sbjct: 4 SQPESRKILTSNRRELEPERKKPKYFLRVRVTGIERNKSKD-----PIIRFDVTTNLPTF 58
Query: 58 QGPE-KIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQ---GL 113
+ K V R Y +F L L F+P LP S + + E R+ L
Sbjct: 59 RSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPST----SYGSNNEEDARKLKANL 114
Query: 114 DLFVNRIASHPELQQSEDLKTFLQAD 139
+ NR+ S P L + E+L+ F+++D
Sbjct: 115 QRWFNRVCSDPILIRDEELRFFIESD 140
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. The PX-BAR structural unit helps determine specific membrane localization. Length = 140 |
| >gnl|CDD|153313 cd07629, BAR_Atg20p, The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 36/197 (18%), Positives = 69/197 (35%), Gaps = 29/197 (14%)
Query: 199 ELENHLAEA-QKHAYRLVKRHRELGESLSDFGKA-AKLLGACEGDALGKAFSELGMKSEA 256
+ E L +K R+ KR +L E ++D G + L +A ++G ++
Sbjct: 15 KYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDS 74
Query: 257 LSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDK 316
+ + L N EPL + + ++ + +R+ + M +
Sbjct: 75 TYLATEALVGSLYYNINEPLSESAQFAGVVRELL-----KYRKLKHVQYEMTKDSLLESA 129
Query: 317 LMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFS 376
L+ D V + I+ K+L RFQ ++ D+ N+S
Sbjct: 130 LVAASDDLVISSTIKQKDLP----------------------RFQREREADLREILKNYS 167
Query: 377 KGQARLASSIADAWRTL 393
K A +AW+
Sbjct: 168 KYHKDWAKQNLEAWKEA 184
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 187 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 403 | |||
| KOG2273 | 503 | consensus Membrane coat complex Retromer, subunit | 100.0 | |
| cd07665 | 234 | BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S | 100.0 | |
| cd07664 | 234 | BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S | 100.0 | |
| cd07623 | 224 | BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of | 100.0 | |
| PF09325 | 236 | Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp | 100.0 | |
| cd07627 | 216 | BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of | 100.0 | |
| cd07284 | 116 | PX_SNX7 The phosphoinositide binding Phox Homology | 100.0 | |
| cd07283 | 116 | PX_SNX30 The phosphoinositide binding Phox Homolog | 100.0 | |
| cd07286 | 127 | PX_SNX18 The phosphoinositide binding Phox Homolog | 100.0 | |
| cd07666 | 243 | BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.98 | |
| KOG1660 | 399 | consensus Sorting nexin SNX6/TFAF2, contains PX do | 99.98 | |
| cd07282 | 124 | PX_SNX2 The phosphoinositide binding Phox Homology | 99.98 | |
| cd06861 | 112 | PX_Vps5p The phosphoinositide binding Phox Homolog | 99.98 | |
| cd06860 | 116 | PX_SNX7_30_like The phosphoinositide binding Phox | 99.98 | |
| cd07295 | 116 | PX_Grd19 The phosphoinositide binding Phox Homolog | 99.98 | |
| cd07293 | 123 | PX_SNX3 The phosphoinositide binding Phox Homology | 99.97 | |
| cd07596 | 218 | BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So | 99.97 | |
| cd07667 | 240 | BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.97 | |
| cd06894 | 123 | PX_SNX3_like The phosphoinositide binding Phox Hom | 99.97 | |
| cd07294 | 132 | PX_SNX12 The phosphoinositide binding Phox Homolog | 99.97 | |
| cd07621 | 219 | BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.97 | |
| cd07285 | 126 | PX_SNX9 The phosphoinositide binding Phox Homology | 99.97 | |
| KOG2528 | 490 | consensus Sorting nexin SNX9/SH3PX1 and related pr | 99.97 | |
| cd07663 | 218 | BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.97 | |
| cd07624 | 200 | BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o | 99.97 | |
| cd07662 | 218 | BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.97 | |
| cd07625 | 230 | BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of | 99.97 | |
| COG5391 | 524 | Phox homology (PX) domain protein [Intracellular t | 99.97 | |
| cd06863 | 118 | PX_Atg24p The phosphoinositide binding Phox Homolo | 99.97 | |
| cd06865 | 120 | PX_SNX_like The phosphoinositide binding Phox Homo | 99.97 | |
| cd06891 | 140 | PX_Vps17p The phosphoinositide binding Phox Homolo | 99.97 | |
| cd07281 | 124 | PX_SNX1 The phosphoinositide binding Phox Homology | 99.96 | |
| cd06898 | 113 | PX_SNX10 The phosphoinositide binding Phox Homolog | 99.96 | |
| cd06862 | 125 | PX_SNX9_18_like The phosphoinositide binding Phox | 99.96 | |
| cd06859 | 114 | PX_SNX1_2_like The phosphoinositide binding Phox H | 99.96 | |
| cd07628 | 185 | BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of | 99.96 | |
| cd06864 | 129 | PX_SNX4 The phosphoinositide binding Phox Homology | 99.96 | |
| cd07291 | 141 | PX_SNX5 The phosphoinositide binding Phox Homology | 99.96 | |
| cd07630 | 198 | BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain | 99.96 | |
| cd07292 | 141 | PX_SNX6 The phosphoinositide binding Phox Homology | 99.96 | |
| cd07622 | 201 | BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.95 | |
| cd06868 | 120 | PX_HS1BP3 The phosphoinositide binding Phox Homolo | 99.95 | |
| cd07301 | 112 | PX_SNX21 The phosphoinositide binding Phox Homolog | 99.95 | |
| cd07288 | 118 | PX_SNX15 The phosphoinositide binding Phox Homolog | 99.95 | |
| KOG2527 | 144 | consensus Sorting nexin SNX11 [Intracellular traff | 99.94 | |
| cd06867 | 112 | PX_SNX41_42 The phosphoinositide binding Phox Homo | 99.94 | |
| cd06892 | 141 | PX_SNX5_like The phosphoinositide binding Phox Hom | 99.94 | |
| cd07280 | 120 | PX_YPT35 The phosphoinositide binding Phox Homolog | 99.94 | |
| cd07287 | 118 | PX_RPK118_like The phosphoinositide binding Phox H | 99.94 | |
| cd06866 | 105 | PX_SNX8_Mvp1p_like The phosphoinositide binding Ph | 99.94 | |
| cd07629 | 187 | BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of | 99.93 | |
| cd07300 | 114 | PX_SNX20 The phosphoinositide binding Phox Homolog | 99.93 | |
| cd07279 | 112 | PX_SNX20_21_like The phosphoinositide binding Phox | 99.93 | |
| cd06877 | 119 | PX_SNX14 The phosphoinositide binding Phox Homolog | 99.93 | |
| cd06893 | 132 | PX_SNX19 The phosphoinositide binding Phox Homolog | 99.93 | |
| cd06872 | 107 | PX_SNX19_like_plant The phosphoinositide binding P | 99.93 | |
| cd06881 | 117 | PX_SNX15_like The phosphoinositide binding Phox Ho | 99.93 | |
| cd06873 | 120 | PX_SNX13 The phosphoinositide binding Phox Homolog | 99.92 | |
| cd07598 | 211 | BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.92 | |
| cd06886 | 106 | PX_SNX27 The phosphoinositide binding Phox Homolog | 99.92 | |
| cd07276 | 110 | PX_SNX16 The phosphoinositide binding Phox Homolog | 99.91 | |
| cd06897 | 108 | PX_SNARE The phosphoinositide binding Phox Homolog | 99.9 | |
| cd06870 | 109 | PX_CISK The phosphoinositide binding Phox Homology | 99.9 | |
| cd06882 | 123 | PX_p40phox The phosphoinositide binding Phox Homol | 99.9 | |
| cd06885 | 104 | PX_SNX17_31 The phosphoinositide binding Phox Homo | 99.89 | |
| cd07277 | 118 | PX_RUN The phosphoinositide binding Phox Homology | 99.89 | |
| cd06878 | 127 | PX_SNX25 The phosphoinositide binding Phox Homolog | 99.89 | |
| cd06876 | 133 | PX_MDM1p The phosphoinositide binding Phox Homolog | 99.89 | |
| cd06879 | 138 | PX_UP1_plant The phosphoinositide binding Phox Hom | 99.89 | |
| cd07597 | 246 | BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.89 | |
| cd06875 | 116 | PX_IRAS The phosphoinositide binding Phox Homology | 99.88 | |
| cd06880 | 110 | PX_SNX22 The phosphoinositide binding Phox Homolog | 99.87 | |
| cd06871 | 120 | PX_MONaKA The phosphoinositide binding Phox Homolo | 99.86 | |
| cd06869 | 119 | PX_UP2_fungi The phosphoinositide binding Phox Hom | 99.86 | |
| smart00312 | 105 | PX PhoX homologous domain, present in p47phox and | 99.84 | |
| cd06874 | 127 | PX_KIF16B_SNX23 The phosphoinositide binding Phox | 99.84 | |
| cd06093 | 106 | PX_domain The Phox Homology domain, a phosphoinosi | 99.83 | |
| cd07626 | 199 | BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain | 99.83 | |
| cd06883 | 109 | PX_PI3K_C2 The phosphoinositide binding Phox Homol | 99.83 | |
| PF00787 | 113 | PX: PX domain; InterPro: IPR001683 The PX (phox) d | 99.81 | |
| cd06884 | 111 | PX_PI3K_C2_68D The phosphoinositide binding Phox H | 99.79 | |
| cd06895 | 140 | PX_PLD The phosphoinositide binding Phox Homology | 99.78 | |
| cd06888 | 119 | PX_FISH The phosphoinositide binding Phox Homology | 99.76 | |
| cd06887 | 118 | PX_p47phox The phosphoinositide binding Phox Homol | 99.76 | |
| PF10456 | 237 | BAR_3_WASP_bdg: WASP-binding domain of Sorting nex | 99.71 | |
| cd06890 | 112 | PX_Bem1p The phosphoinositide binding Phox Homolog | 99.71 | |
| cd07290 | 109 | PX_PI3K_C2_beta The phosphoinositide binding Phox | 99.7 | |
| cd07289 | 109 | PX_PI3K_C2_alpha The phosphoinositide binding Phox | 99.7 | |
| cd07668 | 210 | BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.69 | |
| cd07669 | 207 | BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.67 | |
| cd07670 | 207 | BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.67 | |
| cd07296 | 135 | PX_PLD1 The phosphoinositide binding Phox Homology | 99.64 | |
| cd07590 | 225 | BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B | 99.63 | |
| cd07588 | 211 | BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma | 99.59 | |
| cd07307 | 194 | BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri | 99.55 | |
| cd07611 | 211 | BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) | 99.54 | |
| PF06730 | 219 | FAM92: FAM92 protein; InterPro: IPR009602 This fam | 99.53 | |
| PF03114 | 229 | BAR: BAR domain; InterPro: IPR004148 Endocytosis a | 99.51 | |
| cd07591 | 224 | BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o | 99.51 | |
| cd07612 | 211 | BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B | 99.51 | |
| cd06889 | 121 | PX_NoxO1 The phosphoinositide binding Phox Homolog | 99.45 | |
| cd07599 | 216 | BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o | 99.41 | |
| smart00721 | 239 | BAR BAR domain. | 99.36 | |
| cd07297 | 130 | PX_PLD2 The phosphoinositide binding Phox Homology | 99.29 | |
| cd07589 | 195 | BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of | 99.27 | |
| KOG3771 | 460 | consensus Amphiphysin [Intracellular trafficking, | 99.2 | |
| cd06896 | 101 | PX_PI3K_C2_gamma The phosphoinositide binding Phox | 99.2 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.17 | |
| KOG3784 | 407 | consensus Sorting nexin protein SNX27 [General fun | 98.99 | |
| cd07595 | 244 | BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) | 98.86 | |
| cd07593 | 215 | BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom | 98.83 | |
| cd07601 | 215 | BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A | 98.81 | |
| cd07637 | 200 | BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.79 | |
| cd07603 | 200 | BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of | 98.78 | |
| cd07604 | 215 | BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of | 98.77 | |
| cd07638 | 200 | BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.72 | |
| cd07639 | 200 | BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.71 | |
| cd07606 | 202 | BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain | 98.7 | |
| cd07594 | 229 | BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom | 98.66 | |
| cd07618 | 246 | BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.65 | |
| cd07619 | 248 | BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.65 | |
| cd07602 | 207 | BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR | 98.64 | |
| cd07614 | 223 | BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do | 98.6 | |
| cd07660 | 201 | BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain | 98.59 | |
| cd07592 | 223 | BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom | 98.57 | |
| cd07615 | 223 | BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do | 98.55 | |
| cd07634 | 207 | BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai | 98.54 | |
| cd07642 | 215 | BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.53 | |
| cd00011 | 203 | BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do | 98.52 | |
| cd07600 | 242 | BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.5 | |
| cd07636 | 207 | BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G | 98.5 | |
| cd07635 | 207 | BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.5 | |
| PF06456 | 229 | Arfaptin: Arfaptin-like domain; InterPro: IPR01050 | 98.48 | |
| cd07616 | 229 | BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do | 98.47 | |
| cd07613 | 223 | BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do | 98.45 | |
| cd07617 | 220 | BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do | 98.39 | |
| cd07620 | 257 | BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.37 | |
| cd07641 | 215 | BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.31 | |
| KOG4773 | 386 | consensus NADPH oxidase [Energy production and con | 98.21 | |
| KOG2101 | 362 | consensus Intermediate filament-like protein, sort | 98.18 | |
| cd07631 | 215 | BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.1 | |
| cd07633 | 207 | BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.01 | |
| PF08397 | 219 | IMD: IRSp53/MIM homology domain; InterPro: IPR0136 | 97.99 | |
| PF13805 | 271 | Pil1: Eisosome component PIL1; PDB: 3PLT_B. | 97.91 | |
| cd07640 | 213 | BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.89 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 97.83 | |
| cd07298 | 115 | PX_RICS The phosphoinositide binding Phox Homology | 97.8 | |
| cd07632 | 215 | BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.78 | |
| cd07659 | 215 | BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.73 | |
| PF10455 | 289 | BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr | 97.71 | |
| cd07661 | 204 | BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.52 | |
| cd07605 | 223 | I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5 | 97.48 | |
| KOG1118 | 366 | consensus Lysophosphatidic acid acyltransferase en | 97.46 | |
| KOG1451 | 812 | consensus Oligophrenin-1 and related Rho GTPase-ac | 97.4 | |
| cd07299 | 113 | PX_TCGAP The phosphoinositide binding Phox Homolog | 97.37 | |
| cd07648 | 261 | F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am | 97.33 | |
| KOG3725 | 375 | consensus SH3 domain protein SH3GLB [Signal transd | 97.31 | |
| cd07650 | 228 | F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and | 97.26 | |
| cd07278 | 114 | PX_RICS_like The phosphoinositide binding Phox Hom | 97.16 | |
| cd07674 | 261 | F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A | 97.15 | |
| cd07651 | 236 | F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology | 97.14 | |
| KOG3876 | 341 | consensus Arfaptin and related proteins [Signal tr | 96.97 | |
| cd07649 | 233 | F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am | 96.97 | |
| cd07673 | 269 | F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A | 96.94 | |
| cd07658 | 239 | F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin | 96.7 | |
| KOG0521 | 785 | consensus Putative GTPase activating proteins (GAP | 96.54 | |
| cd07655 | 258 | F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/ | 96.33 | |
| cd07653 | 251 | F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B | 96.15 | |
| KOG3651 | 429 | consensus Protein kinase C, alpha binding protein | 95.78 | |
| cd07680 | 258 | F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin | 95.55 | |
| cd07653 | 251 | F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B | 95.39 | |
| cd07610 | 191 | FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or | 95.33 | |
| KOG2856 | 472 | consensus Adaptor protein PACSIN [Signal transduct | 94.94 | |
| cd07643 | 231 | I-BAR_IMD_MIM Inverse (I)-BAR, also known as the I | 94.7 | |
| cd07596 | 218 | BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So | 94.45 | |
| cd07672 | 240 | F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin | 93.94 | |
| cd07681 | 258 | F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin | 93.02 | |
| cd07647 | 239 | F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/ | 92.84 | |
| cd07657 | 237 | F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin | 92.3 | |
| cd07651 | 236 | F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology | 92.05 | |
| KOG3891 | 436 | consensus Secretory vesicle-associated protein ICA | 91.92 | |
| cd07307 | 194 | BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri | 91.22 | |
| cd07645 | 226 | I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as | 91.17 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 90.51 | |
| cd07657 | 237 | F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin | 90.0 | |
| PF08397 | 219 | IMD: IRSp53/MIM homology domain; InterPro: IPR0136 | 89.8 | |
| PF09325 | 236 | Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp | 89.74 | |
| cd07685 | 237 | F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amp | 89.15 | |
| cd07676 | 253 | F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A | 89.04 | |
| cd07646 | 232 | I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as th | 88.9 | |
| KOG2398 | 611 | consensus Predicted proline-serine-threonine phosp | 88.37 | |
| cd07679 | 258 | F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin | 88.24 | |
| PF03114 | 229 | BAR: BAR domain; InterPro: IPR004148 Endocytosis a | 87.16 | |
| cd07671 | 242 | F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin | 86.66 | |
| cd07607 | 209 | BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domai | 85.63 | |
| COG5185 | 622 | HEC1 Protein involved in chromosome segregation, i | 85.34 | |
| cd07644 | 215 | I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as | 83.9 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 83.74 | |
| cd07675 | 252 | F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/ | 83.1 | |
| cd07686 | 234 | F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amp | 82.98 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 82.5 | |
| TIGR03545 | 555 | conserved hypothetical protein TIGR03545. This mod | 80.95 | |
| cd07647 | 239 | F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/ | 80.41 |
| >KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=340.88 Aligned_cols=366 Identities=35% Similarity=0.565 Sum_probs=311.2
Q ss_pred cEEEEEcCce-EeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc---cC
Q 043025 25 YLSVSVTDPV-KLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK---FR 100 (403)
Q Consensus 25 ~~~v~V~~~~-~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~---~~ 100 (403)
.+.|.++++. ..+++.+.|++|.|.+.++.|.|....+.|+|||+||.|||+.|...||+++|||+|+|...+. ..
T Consensus 109 ~~~i~~~~~~~~~~~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~~~ 188 (503)
T KOG2273|consen 109 DLSITVSDPEPEIGDGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSGDS 188 (503)
T ss_pred heeeecCCCccccCCCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhccccCC
Confidence 4678888888 6667889999999999999999999999999999999999999999999999999999999873 25
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh--hHH--HhhhccCCCCCCCcchHHHHHHhhhhhhhhhh
Q 043025 101 FSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE--TME--RLRSQDTGYFKKKPADLMQIFKDVQSKVSDVV 176 (403)
Q Consensus 101 ~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (403)
++++|++.||++|++||++|+.||.|++++.|+.||+.+.. .|. .......+.. .. +++......-.-.+
T Consensus 189 ~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~~~~FL~~~~~~~~~~~~~~~~~~~~~l--~~----~~~~~~~~~~~~~~ 262 (503)
T KOG2273|consen 189 FSDEFIEKRRKALERFLNRLSLHPVLSNDEDFRLFLESDSKELPTDVNSRFKSGADLL--SK----QFFGETSSTDAVSL 262 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcccccccchhhHHHHhcchhhc--cc----cccCcccchhhhhc
Confidence 79999999999999999999999999999999999999942 121 1111111110 00 11111110000001
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-h-hHHHHHHHHHHHH
Q 043025 177 LGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG-D-ALGKAFSELGMKS 254 (403)
Q Consensus 177 ~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~-~-~L~~~~~~~~~~~ 254 (403)
.....+..+.+++|.+..++++.++.++..+.+.+.++++....++..+.++|.++..|+.++. . .+...+..++.+.
T Consensus 263 ~~~~~~~~~~~~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~ 342 (503)
T KOG2273|consen 263 LPSFKKFKESDKEFTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVI 342 (503)
T ss_pred cccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH
Confidence 1234456677999999999999999999999999999999999999999999999999999884 3 7899999999999
Q ss_pred HHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc-----CcchHHHH
Q 043025 255 EALSVKLQRE-AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT-----RSDKVGEA 328 (403)
Q Consensus 255 ~~~~~~~~~~-~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~-----~~~ki~~l 328 (403)
..++....+. +......+.+.+++|++++++++.++..|..+++.++.++..+.++++.+.++... ..+|.+.+
T Consensus 343 ~~~~~~~e~~~~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~ 422 (503)
T KOG2273|consen 343 ESLSKLLEKLTAEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLA 422 (503)
T ss_pred HHHHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHH
Confidence 9999999999 99999999999999999999999999999999999999999999999998888733 35777777
Q ss_pred HHHHHHHHHHHHHHH-----HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 329 EIEYKELKAESEDST-----RRFE--TIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 329 ~~~i~~~~~~~~~~~-----~~~~--~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+.++...+..++.+. ..++ .|++.++.|+.+|...+..+|+.++..|++.++++++++++.|+++.+.
T Consensus 423 ~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~l~~W~~~~~~ 497 (503)
T KOG2273|consen 423 EKEIEKLEEKVNELEELLALKELELDEISERIRAELERFEESRRQDFKESLKKYADLHVEYAEQILKAWEKFLPS 497 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 888888777777776 6666 9999999999999999999999999999999999999999999999884
|
|
| >cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=252.73 Aligned_cols=227 Identities=22% Similarity=0.342 Sum_probs=218.4
Q ss_pred hhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHH
Q 043025 171 KVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-GDALGKAFSE 249 (403)
Q Consensus 171 ~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-~~~L~~~~~~ 249 (403)
.+++++.+...++.|+|++|.+.+.|+..|+.+|+.|.+.+..+++++++|+..+.+||.++..|+.+| ++.|+.+++.
T Consensus 5 ~~~d~~~~~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~ 84 (234)
T cd07665 5 KATDAVSKMTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQ 84 (234)
T ss_pred HHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 345666777888999999999999999999999999999999999999999999999999999999999 5689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-ccCcchHHHH
Q 043025 250 LGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM-LTRSDKVGEA 328 (403)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l 328 (403)
+|+....++....+++......|.++|++|++.+.|||.+|..|.++++.|+.++..+.+++.+++|+. +++++|+..+
T Consensus 85 laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a 164 (234)
T cd07665 85 LAEVEEKIEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQA 164 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 6688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 329 EIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 329 ~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
+.+|.+++.+++.++.+|+.|+..++.|+.||+.+|..||+.++..|++.+|...+++++.|+.++|..
T Consensus 165 ~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~fles~ie~qke~ie~We~flp~~ 233 (234)
T cd07665 165 KDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFLPEA 233 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999875
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization |
| >cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=253.02 Aligned_cols=227 Identities=25% Similarity=0.385 Sum_probs=217.1
Q ss_pred hhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHH
Q 043025 171 KVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-GDALGKAFSE 249 (403)
Q Consensus 171 ~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-~~~L~~~~~~ 249 (403)
.+++++.+...++.|+|++|.+.+.|+..|+.+|+.+.+.++.+++++++++.++.+||.++..|+.+| ++.|+.++..
T Consensus 5 ~~~~~~~~~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~ 84 (234)
T cd07664 5 KAADAVNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQ 84 (234)
T ss_pred HHHHHHHhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHH
Confidence 344556667778899999999999999999999999999999999999999999999999999999987 5689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-ccCcchHHHH
Q 043025 250 LGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM-LTRSDKVGEA 328 (403)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l 328 (403)
+|+....+.....+++..+...|.++|++|++.+.|+|.+|.+|.++++.|+.++..+.+++.+++|+. +++++|+..+
T Consensus 85 laev~~ki~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~ 164 (234)
T cd07664 85 LAEVEEKIDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQA 164 (234)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999996 4678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 329 EIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 329 ~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
+.+|.+++.+...++.+|+.|+..++.|+.+|+.+|..||+.++..|++.++.+.+++++.|+.|+|..
T Consensus 165 ~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fles~ie~qke~ie~We~f~p~~ 233 (234)
T cd07664 165 KDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEA 233 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999875
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization |
| >cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=243.21 Aligned_cols=217 Identities=24% Similarity=0.389 Sum_probs=210.0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHH
Q 043025 181 KPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-GDALGKAFSELGMKSEALSV 259 (403)
Q Consensus 181 ~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-~~~L~~~~~~~~~~~~~~~~ 259 (403)
.++.|+|++|.+.+.|+..|+.+|+.+.+.++.+++++++++.++.+||.++..|+.+| ++.|+.++..+|++...++.
T Consensus 5 ~k~~E~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~ 84 (224)
T cd07623 5 IKMDETDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQ 84 (224)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999 67899999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-ccCcchHHHHHHHHHHHHHH
Q 043025 260 KLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM-LTRSDKVGEAEIEYKELKAE 338 (403)
Q Consensus 260 ~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l~~~i~~~~~~ 338 (403)
...+++..+...|.++|++|++.+.|++++|.+|.++++.|+.++..+.+++.+++|+. .++++|++.++.+|.+++.+
T Consensus 85 ~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~~~e~~ 164 (224)
T cd07623 85 LHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIKEWEAK 164 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997 44689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 339 SEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 339 ~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
.+.++.+|+.|+..++.|+.+|+..|..||+.+|..|++.+|.+.+++++.|+.++|..
T Consensus 165 ~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~pe~ 223 (224)
T cd07623 165 VDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLPEA 223 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999864
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh |
| >PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=242.80 Aligned_cols=217 Identities=29% Similarity=0.493 Sum_probs=208.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHH
Q 043025 180 EKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALS 258 (403)
Q Consensus 180 ~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~-~L~~~~~~~~~~~~~~~ 258 (403)
...+.++|++|.+.++|+..|+.+|+.+.+...++++++++++.++.+||.+|..|+.+|.+ .|+.++..+|++++.++
T Consensus 16 ~~~~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~ 95 (236)
T PF09325_consen 16 SPKMKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKIS 95 (236)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999854 79999999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc---CcchHHHHHHHHHHH
Q 043025 259 VKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT---RSDKVGEAEIEYKEL 335 (403)
Q Consensus 259 ~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~---~~~ki~~l~~~i~~~ 335 (403)
.....++..+...|.++|++|++++.|+|++|.+|+.++.+|+.+...+.+++..++++.+. +++|++.++.+|.++
T Consensus 96 ~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~ 175 (236)
T PF09325_consen 96 ELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEA 175 (236)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999854 568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 336 KAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 336 ~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+..++.++.+|+.|+..++.|+.+|+..|..||+.+|.+|++.+|.+++++++.|+.++|+
T Consensus 176 ~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~~ 236 (236)
T PF09325_consen 176 ERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLPE 236 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 9999999999999999999999999999999999999999999999999999999999874
|
This is the C-terminal dimerisation domain []. |
| >cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=235.39 Aligned_cols=211 Identities=19% Similarity=0.357 Sum_probs=204.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-GDALGKAFSELGMKSEALSVKLQR 263 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-~~~L~~~~~~~~~~~~~~~~~~~~ 263 (403)
|+|++|.+.+.|+..|+.+|+.+.+.++.+++++++++.++.+||.++..|+.+| ++.|+.++..+|++...++.....
T Consensus 1 e~D~~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 1 EPDEWFIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLER 80 (216)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999998 568999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc---CcchHHHHHHHHHHHHHHHH
Q 043025 264 EAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT---RSDKVGEAEIEYKELKAESE 340 (403)
Q Consensus 264 ~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~---~~~ki~~l~~~i~~~~~~~~ 340 (403)
++......|.++|++|++++.|+|++|.+|.++++.|+.+...+.+++.+++|+.+. +++|+..++.+|.+++.+++
T Consensus 81 ~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~ 160 (216)
T cd07627 81 QALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRAS 160 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999853 47899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 341 DSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 341 ~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
.++.+|+.|+..++.|+.+|+..|..+|+.+|..|++.+|.+++++++.|+.|+.
T Consensus 161 ~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~~ 215 (216)
T cd07627 161 ELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETFYQ 215 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999864
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in |
| >cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=219.48 Aligned_cols=113 Identities=45% Similarity=0.778 Sum_probs=106.6
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc--cCCCH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK--FRFSA 103 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~--~~~~~ 103 (403)
+.|.|+||+++++|+++|++|.|.++++.|.|+...+.|+||||||.|||..|...||++++||||+|..+.. .++++
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~ 80 (116)
T cd07284 1 IFITVDEPESHVTAIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNE 80 (116)
T ss_pred CEEEEeCcceeecCCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhccccCCH
Confidence 4799999999999999999999999999999999999999999999999999999999999999999987642 15789
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+||++||++|+.||++|+.||.|+.|+.|+.||+.
T Consensus 81 ~fie~Rr~~Le~FL~ri~~hp~L~~s~~~~~FL~~ 115 (116)
T cd07284 81 DFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccChHHHHhhcC
Confidence 99999999999999999999999999999999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30, |
| >cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=218.28 Aligned_cols=114 Identities=50% Similarity=0.759 Sum_probs=106.6
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc--cCCCH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK--FRFSA 103 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~--~~~~~ 103 (403)
+.|+|+||.++++|+++|++|.|.++++.|+|....|.|+||||||.|||+.|...+|++++||||+|+.+.. .++++
T Consensus 1 ~~i~V~dP~~~~~~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd07283 1 LFVTVDDPKKHVCTMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSE 80 (116)
T ss_pred CEEEEcCcceecCCCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccccccCCCH
Confidence 4699999999999999999999999999999999999999999999999999999999999999999987531 25799
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+||++||++|+.||++|+.||.|+.|+.|+.||+.+
T Consensus 81 ~fie~Rr~~Le~FL~~i~~hp~L~~s~~~~~FLt~~ 116 (116)
T cd07283 81 EFVETRRKALDKFLKRIADHPVLSFNEHFNVFLTAK 116 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcCC
Confidence 999999999999999999999999999999999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32 |
| >cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=217.97 Aligned_cols=111 Identities=36% Similarity=0.707 Sum_probs=102.5
Q ss_pred EEEEEcCceEeC--CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCH
Q 043025 26 LSVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSA 103 (403)
Q Consensus 26 ~~v~V~~~~~~~--~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~ 103 (403)
+.|+|+||++++ +|+++|++|.|.+.. ..+.|+||||||.|||..|...||+++|||||+|..++ ++++
T Consensus 1 ~~~~v~dp~k~~~~~G~~~Yv~Y~I~~~~-------~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~g--~f~~ 71 (127)
T cd07286 1 FQCTIDDPTKQTKFKGMKSYISYKLVPSH-------TGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQATG--RFEE 71 (127)
T ss_pred CeEEeCCCcccCCCCCCcCEEEEEEEEec-------CceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcCC--CCCH
Confidence 468999999997 889999999998753 56999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC--hhh-HHH
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD--EET-MER 145 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~--~~~-~~~ 145 (403)
+||++||++|+.||++|+.||.|+.|+.|+.||+.+ ++. |++
T Consensus 72 ~FIe~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~~~~~~~~~~~~ 116 (127)
T cd07286 72 DFISKRRKGLIWWMDHMCSHPVLARCDAFQHFLTCPSTDEKAWKQ 116 (127)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccChHHHHHhcCCcchhHHHhh
Confidence 999999999999999999999999999999999976 333 764
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki |
| >cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7 | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.2e-30 Score=224.18 Aligned_cols=240 Identities=19% Similarity=0.314 Sum_probs=198.6
Q ss_pred CccccCChhhhcccccChhhHHH--hhhccCCCCCCCcchHHHHHHhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHH
Q 043025 123 HPELQQSEDLKTFLQADEETMER--LRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFEL 200 (403)
Q Consensus 123 ~~~l~~~~~~~~FL~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~i~~l 200 (403)
||+|+.++.|+.||++++ |+. .++..+|. +.++..++.+++.+ ...+..+|++|.++++|++.+
T Consensus 1 HPvLs~~~~~~~FL~s~~--W~~~~~~~~~~g~-----------~~~~~d~~~~~~s~-~~~v~~~~~eF~Emkey~d~L 66 (243)
T cd07666 1 HPTLTFNEDFKIFLTAQA--WELSSHKKQGPGL-----------LSRMGQTVKAVASS-VRGVKNRPEEFTEMNEYVEAF 66 (243)
T ss_pred CCccccChHHHHHHcCch--HHHHHHHhcchhh-----------hhhhHHHHHHHHHh-ccccCCCCHHHHHHHHHHHHH
Confidence 899999999999999975 653 22222222 22222233333222 112455799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043025 201 ENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV 280 (403)
Q Consensus 201 e~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~ 280 (403)
+.+|..+.+++.+++++..++...+.+||..+..||.+|.+ |+..++.+|.+++..+.....+...+...|.++|++|+
T Consensus 67 ~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~-L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv 145 (243)
T cd07666 67 SQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEE-LADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYV 145 (243)
T ss_pred HHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976 99999999999999999988888989999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 281 RAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRF 360 (403)
Q Consensus 281 ~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f 360 (403)
.|+.++|.+|+.|..+..+++...+.+.++ +.+| ..++.+|.+++.+++++ +..++.|+.||
T Consensus 146 ~y~~slK~vlk~R~~~Q~~le~k~e~l~k~----------~~dr-~~~~~ev~~~e~kve~a-------~~~~k~e~~Rf 207 (243)
T cd07666 146 LYSETLMGVIKRRDQIQAELDSKVEALANK----------KADR-DLLKEEIEKLEDKVECA-------NNALKADWERW 207 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 999999999999987777777766655542 3455 46667777777766666 66699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 361 QEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 361 ~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
+..|..||+.+|.+|++.+|.++++++..|+.|+.
T Consensus 208 ~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~fl~ 242 (243)
T cd07666 208 KQNMQTDLRSAFTDMAENNISYYEECLATWESFLH 242 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999974
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=230.14 Aligned_cols=344 Identities=20% Similarity=0.350 Sum_probs=281.0
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHH--hhcCCccCCCCCCCcccccc---
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLF--EKYKGIFIPPLPEKSAVEKF--- 99 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~--~~~p~~~iP~lP~k~~~~~~--- 99 (403)
.+.|.|++..-..+. +-|++.+.+.+|.|. +.+.|.|-..+|.|||..+. ..|.|.++||-|+++.+-..
T Consensus 25 s~~~eis~a~se~~k----vK~tv~t~t~lp~~~-~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~rek 99 (399)
T KOG1660|consen 25 SLLVEISDALSEIGK----VKFTVHTRTTLPLFM-PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREK 99 (399)
T ss_pred ceeeeechhhhhccc----ceeeEEEeeeccCCC-CccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHH
Confidence 445555555444433 479999999999998 89999999999999998877 67899999999999986421
Q ss_pred ---------CC------------CHHHHHHHH---HHHHHHHHHHhcCccccCChhhhcccccChhh-HHHhhhccCCCC
Q 043025 100 ---------RF------------SAEFIEMRR---QGLDLFVNRIASHPELQQSEDLKTFLQADEET-MERLRSQDTGYF 154 (403)
Q Consensus 100 ---------~~------------~~~~i~~R~---~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~-~~~~~~~~~~~~ 154 (403)
.+ ..+++..-+ .+-+.||++|+.||+|+.+..|+.||+.+.+. .++..+
T Consensus 100 lQkLGeGe~~mTkEEf~KmK~elEaeyLA~fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~qdLsvr~KNk------ 173 (399)
T KOG1660|consen 100 LQKLGEGEGWMTKEEFLKMKQELEAEYLARFKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYDQDLSVRGKNK------ 173 (399)
T ss_pred HHHhcCCcccccHHHHHHHHHHhhhHHHHHHHHhhccHHHHHHHHhcCCeeecccchhhhhhhcccccccccch------
Confidence 11 222332222 35578999999999999999999999988543 322111
Q ss_pred CCCcchHHHHHHhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 155 KKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKL 234 (403)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~ 234 (403)
...+.++++++..+...++.++ .+.+.|++|+.-+.|+..+..+++...-.++++...++..+.++..+|..++.
T Consensus 174 ---kE~~~~f~k~~~kSAdeillSg--~lkdVddFfe~ek~fl~ey~~~ikdas~kadKmt~~hK~~~ddy~~i~~~~~~ 248 (399)
T KOG1660|consen 174 ---KESFGGFLKRFVKSADEILLSG--KLKDVDDFFETEKNFLKEYHFRIKDASLKADKLTRAHKSVGDDYDQIGNRLNR 248 (399)
T ss_pred ---hhhhhHHHHHHhhhhhheeeec--ceeehhHHHHhhhHHHHHHhhHHhhhccchHHhhhhcccccccHHHHHHHHHH
Confidence 1245677777777666555443 25677999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 043025 235 LGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINL 314 (403)
Q Consensus 235 l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l 314 (403)
++..+...+...+-..++.++..+.+..+....+...+.+.|++|.....+.++++-+|.+++.+|+++...|++.+.+
T Consensus 249 lg~ed~~~v~~~~l~~~e~f~~~~k~e~Rvs~dedlkL~d~l~yy~r~~~aakdllyRr~Rcl~~ye~ank~l~kar~k- 327 (399)
T KOG1660|consen 249 LGEEDAANVKKFQLKEAEYFEEESKVERRVSSDEDLKLGDTLRYYDRDSCAAKDLLYRRERCLADYEAANKNLEKARAK- 327 (399)
T ss_pred hhhhhhcccceeeecchhHHHHHHhHhhhhchHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc-
Confidence 9988766566666677888888888888888888899999999999999999999999999999999998887765432
Q ss_pred HHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 315 DKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 315 ~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~ 394 (403)
+ .++..++...+.+-++|+.|+.+.+.|+..|...|+..|++.|.++++..|++++..+...++++
T Consensus 328 ------n--------kdv~~ae~~q~e~c~kfe~~s~~~k~eli~fk~rrvaaf~knl~el~eleikhak~~~~ll~~~~ 393 (399)
T KOG1660|consen 328 ------N--------KDVHAAEAAQQEACQKFESISESAKEELIGFKTRRVAAFKKNLVELSELEIKHAKTNYSLLRQCL 393 (399)
T ss_pred ------c--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 1 24556677788899999999999999999999999999999999999999999999999999998
Q ss_pred HHhhh
Q 043025 395 PKLEA 399 (403)
Q Consensus 395 ~~~~~ 399 (403)
..+++
T Consensus 394 ~~lk~ 398 (399)
T KOG1660|consen 394 LALKE 398 (399)
T ss_pred HHhhc
Confidence 87764
|
|
| >cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=217.65 Aligned_cols=113 Identities=43% Similarity=0.757 Sum_probs=105.8
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC--CccCCCCCCCcccccc----
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK--GIFIPPLPEKSAVEKF---- 99 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p--~~~iP~lP~k~~~~~~---- 99 (403)
++|+|+||+++++|+++|++|.|.+++++|.|....|.|+|||+||.|||+.|.+.|| |+++||||+|+.++..
T Consensus 1 ~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~ 80 (124)
T cd07282 1 IEIGVSDPEKVGDGMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKV 80 (124)
T ss_pred CEEEEeCCeEecCCccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCcccccccccc
Confidence 5799999999999999999999999999999999999999999999999999999986 8899999999987631
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 100 ----RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 100 ----~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++++||++||.+||.||++|++||.|++|+.|+.||++
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07282 81 GKEDSSSTEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES 123 (124)
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHhhcC
Confidence 358999999999999999999999999999999999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort |
| >cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-32 Score=214.14 Aligned_cols=112 Identities=38% Similarity=0.723 Sum_probs=107.8
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.|.|+||.+++++.++|++|.|.++++.++|....|.|+|||+||.|||+.|...||++++||||+|+.++ +++++|
T Consensus 1 ~~i~V~dp~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~~--~~~~~f 78 (112)
T cd06861 1 FEITVGDPHKVGDLTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSVG--RFDDNF 78 (112)
T ss_pred CEEEEcCcceecCCccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCccccc--CCCHHH
Confidence 479999999999999999999999999999898899999999999999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
|++||++|+.||+.|+.||.|++|+.|+.||+++
T Consensus 79 ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06861 79 VEQRRAALEKMLRKIANHPVLQKDPDFRLFLESE 112 (112)
T ss_pred HHHHHHHHHHHHHHHHCCcccccCcHHHHhcCCC
Confidence 9999999999999999999999999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P |
| >cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30 | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-32 Score=214.33 Aligned_cols=114 Identities=46% Similarity=0.738 Sum_probs=106.7
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCcccc--ccCCCH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVE--KFRFSA 103 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~--~~~~~~ 103 (403)
+.|.|+||+++++|.++|++|.|.++++.++++...|.|+|||+||.|||+.|...||++++||||+|..+. ..++++
T Consensus 1 ~~v~V~dP~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~ 80 (116)
T cd06860 1 LFITVDNPEKHVTTLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSP 80 (116)
T ss_pred CEEEEcCCeeccCCCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCH
Confidence 479999999999999999999999999999999999999999999999999999999999999999999852 126899
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+||++||++||.||++|+.||.|++|+.|+.||+.+
T Consensus 81 ~fie~Rr~~Le~fL~~i~~hp~l~~s~~l~~FLt~~ 116 (116)
T cd06860 81 EFVATRMRALHKFLNRIVEHPVLSFNEHLKVFLTAK 116 (116)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccccCcHHHHhhcCC
Confidence 999999999999999999999999999999999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal |
| >cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19 | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-32 Score=212.72 Aligned_cols=114 Identities=41% Similarity=0.692 Sum_probs=109.4
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHH
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~ 104 (403)
++.|.|+||.++++|.+.|++|.|.+.++.++|....+.|+||||||.|||..|...+|++.+||||+|..++ +++++
T Consensus 1 ~~~i~V~dP~~~~~g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~~--~~~~~ 78 (116)
T cd07295 1 FLEIEVRNPKTHGIGRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFTN--RFSDE 78 (116)
T ss_pred CeEEEEeCCcEecCCCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCcccc--CCCHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999888 89999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccc-CChhhhcccccCh
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQ-QSEDLKTFLQADE 140 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~-~~~~~~~FL~~~~ 140 (403)
||++||.+|+.||++|++||.|+ .++.|..||+.++
T Consensus 79 ~ie~Rr~~Le~fL~~i~~~p~l~~~s~~~~~FL~~~~ 115 (116)
T cd07295 79 VIEERRQGLETFLQSVAGHPLLQTGSKVLAAFLQDPK 115 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCHhhhhCCHHHHHhcCCCC
Confidence 99999999999999999999998 5899999999885
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer. |
| >cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-32 Score=214.24 Aligned_cols=114 Identities=40% Similarity=0.717 Sum_probs=106.3
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc------
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK------ 98 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~------ 98 (403)
+++|.|+||.++++|.++|++|.|.++++.|.|....|.|+||||||.|||+.|.. +|++++||||+|..++.
T Consensus 1 ~~~i~v~dP~~~~~~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~-~~~~~iPpLP~K~~~~~~~~~~~ 79 (123)
T cd07293 1 FLEIDVTNPQTVGVGRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELER-ESKVVVPPLPGKALFRQLPFRGD 79 (123)
T ss_pred CeEEEecCCeEecCCCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHh-ccCCccCCCCCCchhhhcccccc
Confidence 57999999999999999999999999999999988999999999999999999985 58999999999998641
Q ss_pred -cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 99 -FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 99 -~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
.+++++|+++||++|+.||++|++||.|++|+.|+.||+.+
T Consensus 80 ~~~~~~~fie~Rr~~Le~FL~~i~~hP~l~~~~~l~~FL~~~ 121 (123)
T cd07293 80 DGIFDDSFIEERKQGLEQFLNKVAGHPLAQNERCLHMFLQDE 121 (123)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHHHhhcCCC
Confidence 26899999999999999999999999999999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f |
| >cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=224.72 Aligned_cols=210 Identities=40% Similarity=0.641 Sum_probs=203.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD---ALGKAFSELGMKSEALSVKLQ 262 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~---~L~~~~~~~~~~~~~~~~~~~ 262 (403)
+|++|.++++|++.|+.+++.+.+.+.+++++..+++.++.+||.+|..|+..|.. .|+.++..+|++++.++....
T Consensus 2 ~d~~f~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~ 81 (218)
T cd07596 2 EDQEFEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLSE 81 (218)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999865 599999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc---CcchHHHHHHHHHHHHHHH
Q 043025 263 REAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT---RSDKVGEAEIEYKELKAES 339 (403)
Q Consensus 263 ~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~---~~~ki~~l~~~i~~~~~~~ 339 (403)
.++..+...|+++|++|.+++.+++++|.+|+.++.+++.+.+.+.+++.+++++++. +++|+..++.+|.+++.++
T Consensus 82 ~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~ 161 (218)
T cd07596 82 AQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESAL 161 (218)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999843 6789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 340 EDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 340 ~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
+.++.+++.|+..++.|+.+|+..+..+|+.+|.+|++.++.|+++++++|+++.|
T Consensus 162 ~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~~ 217 (218)
T cd07596 162 EEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLLP 217 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999976
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=216.13 Aligned_cols=239 Identities=18% Similarity=0.305 Sum_probs=201.1
Q ss_pred CccccCChhhhcccccChhhHHHhhhccCCCCCCCcchHHHHHHhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHHH
Q 043025 123 HPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELEN 202 (403)
Q Consensus 123 ~~~l~~~~~~~~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~ 202 (403)
||+|+.++.|+.||+++ .|...++...|...+..+.. +.+... . .+..++++|.++++|++.+..
T Consensus 1 HPvLs~~~~f~~FLts~--dw~a~~kq~~~~~~~~~~~~----~~lna~--------~-kv~~~d~eF~e~~ey~d~l~~ 65 (240)
T cd07667 1 HPVLSFNEHFNVFLTAK--DLNAYKKQGIALLSKMGESV----KYVTGG--------Y-KLRSRPLEFAAIGDYLDTFAL 65 (240)
T ss_pred CCccccChHHHHHHcch--hHHHHhhcccccccccchHH----HHHHHH--------h-ccCCCChHHHHHHHHHHHHHH
Confidence 89999999999999999 47765555433322211111 111111 1 245679999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 043025 203 HLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRA 282 (403)
Q Consensus 203 ~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~ 282 (403)
.+.++.++..+++++..++..++.++|..|..|+..|. .|+..+..++.+++..+.......+.....|.++|++|..|
T Consensus 66 ~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~-~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y 144 (240)
T cd07667 66 KLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEG-ELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILY 144 (240)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999995 58899999999999999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 283 VQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQE 362 (403)
Q Consensus 283 ~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~ 362 (403)
+.|+|.+++.|++++.+|+.+.+.+.. +.+++.+ ++.+++.++..++.+++.++.|+.+|+.
T Consensus 145 ~~slk~vlK~RdqkQ~d~E~l~E~l~~-----------rre~~~k-------Le~~ie~~~~~ve~f~~~~~~E~~~Fe~ 206 (240)
T cd07667 145 SESMKNVLKKRDQVQAEYEAKLEAVAL-----------RKEERPK-------VPTDVEKCQDRVECFNADLKADMERWQN 206 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887632 2233444 4445555566678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 363 QKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 363 ~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
.|..+|+.+|.+||..||+||+++++.|+.++|
T Consensus 207 ~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~~l~ 239 (240)
T cd07667 207 NKRQDFRQLLMGMADKNIQYYEKCLTAWESIIP 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999975
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=213.46 Aligned_cols=114 Identities=41% Similarity=0.738 Sum_probs=106.5
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCcccc-------
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVE------- 97 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~------- 97 (403)
+++|.|+||+++++|.++|++|.|.+.++.|.|....|.|+||||||.|||..|... |++++||||+|..+.
T Consensus 1 ~~~i~V~dP~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~ 79 (123)
T cd06894 1 FLEIDVVNPQTHGVGKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLPGKALKRQLPFRGD 79 (123)
T ss_pred CeEEEEeCCcEecCCCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCCCCceecccccccc
Confidence 589999999999999999999999999999999889999999999999999999865 999999999999862
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 98 KFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 98 ~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
..+++++||++||++|+.||++|++||.|++|+.|+.||+.+
T Consensus 80 ~~~~~~~fie~Rr~~L~~fL~~i~~hp~l~~s~~~~~FL~~~ 121 (123)
T cd06894 80 DGIFEEEFIEERRKGLETFINKVAGHPLAQNEKCLHMFLQEE 121 (123)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcChhhccCCHHHHhcCCC
Confidence 127899999999999999999999999999999999999875
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the |
| >cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=213.74 Aligned_cols=117 Identities=39% Similarity=0.687 Sum_probs=107.9
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc-----
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK----- 98 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~----- 98 (403)
.+++|+|+||+++++|+++|++|.|.++++.|.|....+.|+||||||.|||+.|.. .|++++||||+|+.+..
T Consensus 2 ~~~~i~v~dP~~~~~g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~-~~g~~iPpLP~K~~~~~~~~~~ 80 (132)
T cd07294 2 NFLEIDIFNPQTVGVGRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELER-DSKIVVPPLPGKALKRQLPFRG 80 (132)
T ss_pred ceEEEEeeCCeEecCCCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHH-cCCCccCCCCCCceeccccccc
Confidence 479999999999999999999999999999999988999999999999999999986 48999999999997321
Q ss_pred --cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 99 --FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 99 --~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
.+++++||++||++|+.||++|++||.|++++.|+.||+.+..
T Consensus 81 ~~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~~~~~l~~FL~~~~~ 125 (132)
T cd07294 81 DEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQDETI 125 (132)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhcCCCCc
Confidence 1679999999999999999999999999999999999998763
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated. |
| >cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-29 Score=213.96 Aligned_cols=217 Identities=15% Similarity=0.272 Sum_probs=197.4
Q ss_pred HHHhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 043025 164 IFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDAL 243 (403)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L 243 (403)
+|+++..+....+.++ ++.|.|++|++.+.|+..|+.+|+.+...+++++.++++++.++.+||.++..|+.+|.+.|
T Consensus 2 ~~k~~~k~~D~~v~~~--~~~d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~t~L 79 (219)
T cd07621 2 FLKSISKSADEELLLS--GQKDVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEPTPL 79 (219)
T ss_pred HHHHhHHhhhHHHHcC--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchH
Confidence 3455554444244433 46788999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcc
Q 043025 244 GKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSD 323 (403)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ 323 (403)
+..+..+|+.++.+..+..+++..+...|.++|++|++++.|+|++|.+|.+++++|++++..|.+++.+ +
T Consensus 80 ~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~k--------~- 150 (219)
T cd07621 80 DKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKDLLYRRLRCLANYENANKNLEKARAK--------N- 150 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc--------h-
Confidence 9999999999999999999999999999999999999999999999999999999999999999988742 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
.+|.+++.++++++.+|+.|+..++.|+.+|+..|..+|+.+|.+|++.++++++..+++|.+++..+
T Consensus 151 ------~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~~lve~aE~~ik~Ak~~~~~l~~~~~~l 218 (219)
T cd07621 151 ------KDVHAAEAAQQEACEKFESMSESAKQELLDFKTRRVAAFRKNLVELAELEIKHAKAQIQLLKNCLAAL 218 (219)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666777889999999999999999999999999999999999999999999999999999998654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain |
| >cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=211.06 Aligned_cols=111 Identities=35% Similarity=0.657 Sum_probs=102.2
Q ss_pred EEEEEcCceEeC--CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC-ccCCCCCCCccccccCCC
Q 043025 26 LSVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG-IFIPPLPEKSAVEKFRFS 102 (403)
Q Consensus 26 ~~v~V~~~~~~~--~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~-~~iP~lP~k~~~~~~~~~ 102 (403)
+.|.|+||++++ +|+++|++|.|.+.+ .++.|+||||||.|||+.|...||+ +++||||+|..++ +++
T Consensus 1 ~~~~V~dp~k~~~~~g~~~Yv~Y~I~~~~-------~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~g--~f~ 71 (126)
T cd07285 1 FDCVVADPRKGSKMYGLKSYIEYQLTPTN-------TNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVTG--RFE 71 (126)
T ss_pred CEEEEcCcccccCCCCCcCeEEEEEEecc-------CCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCccccC--CCC
Confidence 469999999997 788999999999875 4689999999999999999999975 4599999999999 899
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChhh-HHH
Q 043025 103 AEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEET-MER 145 (403)
Q Consensus 103 ~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~-~~~ 145 (403)
++||++||++|+.||++|++||.|+.++.|+.||+.+++. |+.
T Consensus 72 ~~FIe~Rr~~Le~FL~ri~~hP~L~~~~~l~~FL~~~~~~~w~~ 115 (126)
T cd07285 72 EEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKT 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcCcCCCcHHHHHhCCCCHHHHHh
Confidence 9999999999999999999999999999999999987766 764
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T |
| >KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=234.95 Aligned_cols=294 Identities=23% Similarity=0.388 Sum_probs=229.9
Q ss_pred CCCCcEEEEEcCceEeC--CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc
Q 043025 21 SSQPYLSVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK 98 (403)
Q Consensus 21 ~~~~~~~v~V~~~~~~~--~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~ 98 (403)
++...+.|.|.+|.++. .|+++|+.|.++-.. ....|.|||..|.|||.+|...||.+.|||||+|...+
T Consensus 181 ~~~~~~~c~v~~p~k~sk~kg~ks~i~y~ltpt~-------t~~~v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq~~g- 252 (490)
T KOG2528|consen 181 ANPSPFRCVVDDPKKESKFKGLKSYIAYQLTPTH-------TNISVSRRYKHFDWLYERLLLKFPLIPVPPLPDKQVTG- 252 (490)
T ss_pred cCCCCeeEEecCcccccccccchheeEeeecccc-------cCcchhhcccccHHHHHHHHhhcccccCCCCCcccccc-
Confidence 44456799999999986 788999999997643 34559999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC-hhh-HH-HhhhccCCCCCCCcchHHHHHHhhhhhhhhh
Q 043025 99 FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD-EET-ME-RLRSQDTGYFKKKPADLMQIFKDVQSKVSDV 175 (403)
Q Consensus 99 ~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (403)
++.++||++||+.|+-|++.+++||+|..++.|..||++. ++. |+ ..|+.+++.. .. .++.++. +
T Consensus 253 -r~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~c~~dek~Wk~GKRkAEkDe~-----~g-~~~~~~~-p---- 320 (490)
T KOG2528|consen 253 -RFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLTCPTDEKAWKQGKRKAEKDEL-----VG-NFLLTIS-P---- 320 (490)
T ss_pred -chhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHcCCcccccccccccccccCCc-----cc-ceeeccC-C----
Confidence 9999999999999999999999999999999999999996 555 87 3555554332 11 2222222 1
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 043025 176 VLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRH--------RELGESLSDFGKAAKLLGACEGDALGKAF 247 (403)
Q Consensus 176 ~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~--------~~l~~~~~~l~~~~~~l~~~e~~~L~~~~ 247 (403)
.+....+.+...+.++.+++.|+..+..|..+.....++. +.+++++..|+.+|..-....+..|+.++
T Consensus 321 ---~~ld~~~ve~~ve~~~~f~k~md~~~~~l~~~~~~~~k~~~~~~kke~qk~g~a~~~l~~~f~~d~~~~s~~L~~ai 397 (490)
T KOG2528|consen 321 ---APLDLQEVEMQVERFKRFTKKMDDAVRQLNTTANEFWKRKVGGFKKEYQKMGSAFQTLAQAFEIDPTVDSRPLNEAI 397 (490)
T ss_pred ---cccchHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCccccccchhhhh
Confidence 1123456688889999999999999999888877776653 55555555555555443333356899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHH
Q 043025 248 SELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGE 327 (403)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~ 327 (403)
..+|..+..++.+++++.......+.+.|..|.+.+..+-+++.-...+++.....+.-
T Consensus 398 ~~~g~~y~~Ig~lfa~qpk~Dl~p~~d~l~~y~G~l~nfpDII~~hK~A~~k~kes~~~--------------------- 456 (490)
T KOG2528|consen 398 GLTGDAYHEIGELFAEQPKQDLDPVMDLLVLYQGHLQNFPDIIHVHKGALAKVKESEQL--------------------- 456 (490)
T ss_pred hhhhHHHHHHHHHhhcccccchhHHHHHHHHhhcccccccchhhhhHHHHHHHHHHHHH---------------------
Confidence 99999999999999999999999999999999999999999886665555444333111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 328 AEIEYKELKAESEDSTRRFETIVRLM-NEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIAD 388 (403)
Q Consensus 328 l~~~i~~~~~~~~~~~~~~~~i~~~~-~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~ 388 (403)
...- ..|+.+|..+|+.++ ..||.||+.++.
T Consensus 457 ----------------------~~~g~~aem~hf~~~~~~~~--------~qqi~Fyq~v~~ 488 (490)
T KOG2528|consen 457 ----------------------VAEGFKAEMQHFLQEREYDF--------SQQIIFYQKVAQ 488 (490)
T ss_pred ----------------------hhhhHHHHHHHHHhhccccH--------HHHHHHHHHHhh
Confidence 0011 789999999999998 778888887764
|
|
| >cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-28 Score=209.42 Aligned_cols=216 Identities=15% Similarity=0.266 Sum_probs=197.9
Q ss_pred HHHhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 043025 164 IFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDAL 243 (403)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L 243 (403)
+|+++..++.++..++ ++|+|++|++.+.|+..|+.+|+.+...++++++++++++.++..|+.++..++..+++.|
T Consensus 2 ~~~~~~k~~~e~~~~~---~ke~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~ee~t~L 78 (218)
T cd07663 2 FFKNMVKSADEVLFSG---VKEVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVAAEEPTVI 78 (218)
T ss_pred HHHHHHHhHHHHHHhc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchH
Confidence 5677777777776653 5688999999999999999999999999999999999999999999999998875556789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcc
Q 043025 244 GKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSD 323 (403)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ 323 (403)
+.++..+|+.++.+..+...++..+...|.++|++|++++.|+|++|.+|.+++++|++++..|.+++.+
T Consensus 79 ~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR~k---------- 148 (218)
T cd07663 79 KKYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSNKALDKARLK---------- 148 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------
Confidence 9999999999999999999999999999999999999999999999999999999999999988877621
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
..+|.+++.++++++.+|+.|+..++.|+.+|+..|..+|+.+|.+|++.+|++++.....|.+++..+
T Consensus 149 -----~kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~~E~~ik~ak~~~~~~~~~~~~~ 217 (218)
T cd07663 149 -----SKDVKQAEAHQQECCQKFEKLSESAKQELISFKRRRVAAFRKNLIEMTELEIKHAKNNVSLLQSCIDLF 217 (218)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677888888999999999999999999999999999999999999999999999999999988654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It |
| >cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=214.76 Aligned_cols=192 Identities=18% Similarity=0.311 Sum_probs=180.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 043025 183 VEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQ 262 (403)
Q Consensus 183 ~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~ 262 (403)
+..+|++|.++++|+..|+.+|+.+.+++.++++++.+++.++.+||.+|+.|+.+|.+ |+.+++.+|++++..+....
T Consensus 9 ~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~-L~~~L~~~~~~~~~~~~~~~ 87 (200)
T cd07624 9 LKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETE-LAPLLEGVSSAVERCTAALE 87 (200)
T ss_pred hcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999999999999999999999974 89999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHH
Q 043025 263 REAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDS 342 (403)
Q Consensus 263 ~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~ 342 (403)
.+++.....|.+||++|+.|+.++|.+|+.|+++..+|+.+.+.|.+++.+ ++.+++.+
T Consensus 88 ~l~~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~---------------------l~~ev~~a 146 (200)
T cd07624 88 VLLSDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLE---------------------LLKEVEKL 146 (200)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHH
Confidence 999999999999999999999999999999999999999999999887644 45567778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 343 TRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 343 ~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+.+++.++..++.|+.||+..|..||+.+|.+||..||.||+++++.|+.++|.
T Consensus 147 ~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~~p~ 200 (200)
T cd07624 147 QDKLECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEVLPA 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 889999999999999999999999999999999999999999999999999863
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-28 Score=206.37 Aligned_cols=216 Identities=15% Similarity=0.257 Sum_probs=200.9
Q ss_pred HHHhhhhhhhhhhcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 043025 164 IFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDAL 243 (403)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L 243 (403)
+|+++..+..+++.+ .++|+|+||++.+.|+..|+.+|+.+...+++++..+++++.++..+|.++..|+.+|++.|
T Consensus 2 ~~~~~~k~~de~~~~---~~kd~D~wFe~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~e~t~L 78 (218)
T cd07662 2 FFKNVVKSADGVIVS---GVKDVDDFFEHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQDSTDI 78 (218)
T ss_pred HHHhhhhhhhHHHHh---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhH
Confidence 456666666666654 35688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcc
Q 043025 244 GKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSD 323 (403)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ 323 (403)
+..+..+++.++++..+...++..+...|.+.|++|++++.++|++|.+|..++++|++++..|.+++.+ +
T Consensus 79 ~~~l~~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~-----~---- 149 (218)
T cd07662 79 CKFFLKVSELFDKTRKIEARVAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAK-----N---- 149 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----C----
Confidence 9999999999999999999999999999999999999999999999999999999999999999988755 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
.+|.+++.++++++.+|+.|+..++.|+.+|+..|..+|+++|.+|++.++++++.....|.+++..+
T Consensus 150 ------kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y~E~~lkhak~~~~~~~~~~~~l 217 (218)
T cd07662 150 ------KDVLQAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVELAELELKHAKGNLQLLQSCLAVL 217 (218)
T ss_pred ------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57788899999999999999999999999999999999999999999999999999999999988654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays |
| >cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-27 Score=208.98 Aligned_cols=214 Identities=16% Similarity=0.172 Sum_probs=205.9
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHH
Q 043025 182 PVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-GDALGKAFSELGMKSEALSVK 260 (403)
Q Consensus 182 ~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-~~~L~~~~~~~~~~~~~~~~~ 260 (403)
|+.|+.++..+++..++.+....+.+...++++++++++|+....+||.++..|+.+| ++.|+++++.+|+....+++.
T Consensus 12 ~p~d~~~el~~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl 91 (230)
T cd07625 12 PPYDEYTELAEFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDI 91 (230)
T ss_pred cCCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhH
Confidence 3446699999999999999999999999999999999999999999999999999998 478999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc---CcchHHHHHHHHHHHHH
Q 043025 261 LQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT---RSDKVGEAEIEYKELKA 337 (403)
Q Consensus 261 ~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~---~~~ki~~l~~~i~~~~~ 337 (403)
...++......|.++|.+|++.+.++|++|.+|+.++.+|+.++..+.+|+.+.++++++ +++|+.++..+|++++.
T Consensus 92 ~~~QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~ 171 (230)
T cd07625 92 DSIQATVDMATLYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATK 171 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999853 48999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 338 ESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 338 ~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
..+.+..+|+.|+.+|..|+.+|..++..+|+.+|++|+..+|.++++.+..||++.+
T Consensus 172 ~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~~r~ 229 (230)
T cd07625 172 HEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSLLERIRL 229 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999865
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-27 Score=228.75 Aligned_cols=356 Identities=20% Similarity=0.264 Sum_probs=218.7
Q ss_pred cEEEEEcCceEeCCC---CcceEEEEEEEEecCCCCCCCce---EEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc
Q 043025 25 YLSVSVTDPVKLGNG---VQAYISYRVITKTNFPEYQGPEK---IVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK 98 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~---~~~~~~y~i~~~~~~~~~~~~~~---~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~ 98 (403)
.+.+.|..|.....+ ...|+.|.|...++.|.|..... +|.||||||.|||..|...||.|.|||+|+|+..+.
T Consensus 130 ~~~~~~~~p~s~~~~~~s~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~ 209 (524)
T COG5391 130 FISSTVSNPQSLTLLVDSRDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSE 209 (524)
T ss_pred HhhhccccchhcccccccCCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhcc
Confidence 467888988887644 47899999999999999988887 999999999999999999999999999999999742
Q ss_pred ---cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChhhHHHhhhccCCCCCCCcchHHHHHHhhhhhhhhh
Q 043025 99 ---FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDV 175 (403)
Q Consensus 99 ---~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (403)
.+++++|++.|+.+|+.|++.++.||.+.++. ....|...... +..++..-..-...+
T Consensus 210 ~~~~~~~~~~i~~r~~~L~~~~~~~~~hp~lsn~~--------~~~~~~~~~~~-----------~~~~~~~~~s~~~~~ 270 (524)
T COG5391 210 YYGDRFSDEFIEERRQSLQNFLRRVSTHPLLSNYK--------NSKSWESHSTL-----------LSSFIENRKSVPTPL 270 (524)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHhcCccccccc--------ccccHhhhhHH-----------HHHhhhcccccCccc
Confidence 38999999999999999999999999999877 22224322111 000000000000000
Q ss_pred hcCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 043025 176 VLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSE 255 (403)
Q Consensus 176 ~~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~ 255 (403)
+......+...+....++.........++.+.....+.+..........+..+...+..+..............+....+
T Consensus 271 ~~d~~~t~~~~~~~~~el~~~~s~~~~~~~s~~~~~~~i~~~~~~~~e~~t~l~~~~~~l~~~~~~~~~~~~k~~~~~~n 350 (524)
T COG5391 271 SLDLTSTTQELDMERKELNESTSKAIHNILSIFSLFEKILIQLESEEESLTRLLESLNNLLLLVLNFSGVFAKRLEQNQN 350 (524)
T ss_pred ccchhhhhhhchhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 00000111122233333444444444444444444444444444444444445444444432221000000111111111
Q ss_pred HHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-Hhc---------
Q 043025 256 ALSVKL-------QREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLD-KLM--------- 318 (403)
Q Consensus 256 ~~~~~~-------~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~-kl~--------- 318 (403)
...... ..........+...++..-.++.....+++.++..+..+..+...+...-.+-. -..
T Consensus 351 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~e~~~~t~~~l~k~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~t~~~ 430 (524)
T COG5391 351 SILNEGVVQAETLRSSLKELLTQLQDEIKSRESLILTDSNLEKLTDQNLEDVEELSRSLRKNSSQRAVVSQQPEGLTSFS 430 (524)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhhhhHHHHHHHHhhhhhhhhhhcccccccccc
Confidence 110000 001111112222222222233334444444444444444444443332211100 000
Q ss_pred ------------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 319 ------------LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSI 386 (403)
Q Consensus 319 ------------~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~ 386 (403)
+.+..++..++.+++.+++.++.+..++..|++.+..|+.+|...+..++..++..|++..++|++++
T Consensus 431 ~~~~~~~~~~~e~sr~k~~~~Lqq~~~~l~~~L~~a~~d~~~i~e~~~~el~~~~~~~~~~l~~~l~~~~~~hie~~~~~ 510 (524)
T COG5391 431 KLSYKLRDFVQEKSRSKSIESLQQDKEKLEEQLAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEEN 510 (524)
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11234688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q 043025 387 ADAWRTLLPKLEA 399 (403)
Q Consensus 387 ~~~We~~~~~~~~ 399 (403)
++.|..+..+++.
T Consensus 511 Le~W~~v~~~l~~ 523 (524)
T COG5391 511 LEIWKSVKEQLDR 523 (524)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999998874
|
|
| >cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=206.22 Aligned_cols=113 Identities=45% Similarity=0.699 Sum_probs=105.2
Q ss_pred EEEEEcCceEeC-CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCcccc---ccCC
Q 043025 26 LSVSVTDPVKLG-NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVE---KFRF 101 (403)
Q Consensus 26 ~~v~V~~~~~~~-~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~---~~~~ 101 (403)
+.|.|+||.+++ +|.++|++|.|.++++.|.|+...|.|+|||+||.|||+.|...||++++||||+|..+. ..++
T Consensus 1 ~~i~V~dP~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~ 80 (118)
T cd06863 1 LECLVSDPQKELDGSSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDRF 80 (118)
T ss_pred CEEEEeCcccccCCCccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccCC
Confidence 579999999997 777899999999999999988889999999999999999999999999999999999763 1267
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 102 SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 102 ~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++||++||++|+.||++|+.||.|+.|+.|+.||++
T Consensus 81 ~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~s 117 (118)
T cd06863 81 SPEFITRRAQSLQRFLRRISLHPVLSQSKILHQFLES 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCcccccCcHHHhhcCC
Confidence 9999999999999999999999999999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. |
| >cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=205.55 Aligned_cols=112 Identities=47% Similarity=0.754 Sum_probs=104.0
Q ss_pred EEEEcCceEeCCC------CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCcccccc-
Q 043025 27 SVSVTDPVKLGNG------VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKF- 99 (403)
Q Consensus 27 ~v~V~~~~~~~~~------~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~- 99 (403)
+|+|+||++++++ .++|++|.|.+.++.|++....|.|+|||+||.|||..|...||++.+||||+|..++..
T Consensus 1 ~i~v~dp~~~~~~~~~~~~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~ 80 (120)
T cd06865 1 KITVSDPKKEQEPSRVPLGGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQV 80 (120)
T ss_pred CeEecCcceecCCccccCCCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCccccccc
Confidence 4899999999875 379999999999988888889999999999999999999999999999999999998522
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 100 RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 100 ~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++++||++||.+|+.||+.|+.||.|++|+.|+.||+.
T Consensus 81 ~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06865 81 MQSAEFIEQRRVALEKYLNRLAAHPVIGLSDELRVFLTL 119 (120)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCceeecCcHHHHhccC
Confidence 369999999999999999999999999999999999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu |
| >cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-30 Score=204.95 Aligned_cols=120 Identities=26% Similarity=0.327 Sum_probs=108.7
Q ss_pred CCCCCCCCCcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCce-EEeeccchHHHHHHHHHhhcCCccCCCCCCCc
Q 043025 16 SPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEK-IVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKS 94 (403)
Q Consensus 16 ~~~~~~~~~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~-~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~ 94 (403)
.|..+.+..++.|.|+||++.|+ .|..|.+.++|++|.|....+ .|+||||||+|||++|...+|+++|||||+|.
T Consensus 20 ~~~~~~~~~~l~i~Vtd~ek~G~---~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k~ 96 (140)
T cd06891 20 EPERKKPKYFLRVRVTGIERNKS---KDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPS 96 (140)
T ss_pred CccccCCCceEEEEEeCceecCC---CCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCcc
Confidence 34455677889999999999886 688899999999999998887 79999999999999999999999999999999
Q ss_pred cccccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 95 AVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 95 ~~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
... ...+.+|+++||.+||+||++|+.||.|..|+.|+.||+++
T Consensus 97 ~~~-~~~~~E~~~~rr~~LqrfL~RV~~hP~L~~d~~l~~FLEsd 140 (140)
T cd06891 97 TSY-GSNNEEDARKLKANLQRWFNRVCSDPILIRDEELRFFIESD 140 (140)
T ss_pred ccC-CCCCHHHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhccC
Confidence 752 26789999999999999999999999999999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur |
| >cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-30 Score=204.67 Aligned_cols=113 Identities=44% Similarity=0.739 Sum_probs=104.7
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC--CccCCCCCCCccccc-----
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK--GIFIPPLPEKSAVEK----- 98 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p--~~~iP~lP~k~~~~~----- 98 (403)
+.|.|+||+++++|+++|++|.|.++++.+.|....|.|.||||||.|||..|...|| ++++||+|+|..++.
T Consensus 1 ~~i~V~~p~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~~ 80 (124)
T cd07281 1 LKVSITDPEKIGDGMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 80 (124)
T ss_pred CEEEEcCCeEeeCCcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhhc
Confidence 5799999999999999999999999999999999999999999999999999999985 678999999998752
Q ss_pred ---cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 99 ---FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 99 ---~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
.+++++||++||.+|+.||++|++||.|++|+.|+.||+.
T Consensus 81 ~~~~~~~~~fie~Rr~~Le~FL~~l~~~p~l~~s~~~~~FL~~ 123 (124)
T cd07281 81 GKEDSSSAEFLERRRAALERYLQRIVSHPSLLQDPDVREFLEK 123 (124)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 1358999999999999999999999999999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval |
| >cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=198.83 Aligned_cols=110 Identities=38% Similarity=0.592 Sum_probs=103.7
Q ss_pred EEEEcCceEeCC-CCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCC-HH
Q 043025 27 SVSVTDPVKLGN-GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFS-AE 104 (403)
Q Consensus 27 ~v~V~~~~~~~~-~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~-~~ 104 (403)
.|.|+||.++++ +.++|++|.|.+.++.+.|....|.|+||||||.|||..|...+|++.+||||+|+.++ +++ ++
T Consensus 1 ~v~V~dP~~~~~~~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~--~~~~~~ 78 (113)
T cd06898 1 SVEVRDPRTHKEDDWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLFG--RFNNEG 78 (113)
T ss_pred CeEEeCCcEecCCCCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCcccc--CCCCHH
Confidence 489999999986 77899999999999888887788999999999999999999999999999999999999 677 99
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
||++||++|+.||+.|+.||.|.+|+.|+.||+.
T Consensus 79 fie~Rr~~L~~fL~~i~~~p~l~~s~~l~~FL~~ 112 (113)
T cd06898 79 FIEERQQGLQDFLEKVLQTPLLLSDSRLHLFLQT 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHcChhhccChHHHHhccC
Confidence 9999999999999999999999999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells. |
| >cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=200.44 Aligned_cols=110 Identities=44% Similarity=0.795 Sum_probs=102.6
Q ss_pred EEEEcCceEeC--CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHH
Q 043025 27 SVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 27 ~v~V~~~~~~~--~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~ 104 (403)
.|+|+||++.+ +|+++|++|.|.+.+ ..|.|.||||||.|||..|...||++++||||+|..++ +++++
T Consensus 2 ~~~v~~p~~~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~--~~~~~ 72 (125)
T cd06862 2 HCTVTNPKKESKFKGLKSFIAYQITPTH-------TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVTG--RFEED 72 (125)
T ss_pred EEEEcCccccCCCCCCcCEEEEEEEEec-------CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCcccc--CCCHH
Confidence 69999999987 688999999999864 57999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCChhhhcccccChhh-HHH
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEET-MER 145 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~-~~~ 145 (403)
||++||.+|+.||+.|++||.|++|+.|+.||+.+++. |+.
T Consensus 73 fie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~~~~~~~~~~ 114 (125)
T cd06862 73 FIEKRRERLELWMNRLARHPVLSQSEVFRHFLTCTDEKDWKS 114 (125)
T ss_pred HHHHHHHHHHHHHHHHhcCHhhhcChHHHHHcCCccHHHHHH
Confidence 99999999999999999999999999999999987655 764
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca |
| >cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-29 Score=199.99 Aligned_cols=114 Identities=54% Similarity=0.985 Sum_probs=105.4
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.|.|+||.++++|.++|++|.|.++++.++|....|.|+|||+||.+||+.|...+|+..+||||+|..++..+.+.++
T Consensus 1 ~~~~V~~p~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~~~~~~~~~~ 80 (114)
T cd06859 1 FEISVTDPVKVGDGMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAVGRFKVKFEF 80 (114)
T ss_pred CEEEEeCcceecCCccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCcccCccCccHHH
Confidence 47999999999999999999999999988888888999999999999999999999999999999999999832233459
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
|++|+.+|+.||+.|+.||.|+.|+.|+.||+++
T Consensus 81 ie~Rr~~L~~fL~~i~~~p~l~~s~~~~~Fl~~~ 114 (114)
T cd06859 81 IEKRRAALERFLRRIAAHPVLRKDPDFRLFLESD 114 (114)
T ss_pred HHHHHHHHHHHHHHHhcChhhccCcHHHhhcCCC
Confidence 9999999999999999999999999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex, |
| >cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=199.08 Aligned_cols=183 Identities=19% Similarity=0.295 Sum_probs=174.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
+|++|.++++|++.|+.+|..+.+++.+++++..+++.++.+||.+|+.|+.+|++.|+.+++.+|.+++.++.....++
T Consensus 2 ~d~~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~ 81 (185)
T cd07628 2 PDKEFLEIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLN 81 (185)
T ss_pred CchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999986799999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
+.....|.+||++|..|+.++|.+|+.|+.+..+|+.+.+.+ ++.+++.++..
T Consensus 82 ~~~~~~f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e~l~e~l---------------------------l~~~ve~a~~~ 134 (185)
T cd07628 82 KYTDENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEELSDYL---------------------------LTDEVENAKET 134 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------------------------HHHHHHHHHHH
Confidence 999999999999999999999999999999999999998766 45577888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
++.+++.+..|+.+|+..|..+|+.+|.+||..||.||+++++.|+++.|
T Consensus 135 ~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~~~ 184 (185)
T cd07628 135 SDAFNKEVLKEYPNFERIKKQEIKDSLGALADGHIDFYQGLVEDWEKVEP 184 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999875
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4 | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-29 Score=200.18 Aligned_cols=114 Identities=37% Similarity=0.575 Sum_probs=101.1
Q ss_pred EEEEEcCceEeCCCC-----cceEEEEEEEEecCCCC----CCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccc
Q 043025 26 LSVSVTDPVKLGNGV-----QAYISYRVITKTNFPEY----QGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAV 96 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~-----~~~~~y~i~~~~~~~~~----~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~ 96 (403)
+.|+|++|++.++|. ++|++|.|.+.+..+.+ ....|.|+||||||.|||+.|...||++++||||+|+.+
T Consensus 1 ~~i~v~~~e~~~~~~~~~~~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 80 (129)
T cd06864 1 MEITVTEAEKRTGGSAMNLKETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAM 80 (129)
T ss_pred CeeEecChhhccCCCCCCCCCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCccee
Confidence 369999999998654 39999999999876643 357899999999999999999999999999999999974
Q ss_pred c------ccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 97 E------KFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 97 ~------~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
. ..+++++||++||++||.||+.|++||.|++|+.|+.||+.+
T Consensus 81 ~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~l~~FL~~~ 129 (129)
T cd06864 81 FMWQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQDKIFLEFLTHE 129 (129)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcCcHHHHhcCCC
Confidence 2 126899999999999999999999999999999999999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of |
| >cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5 | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-29 Score=194.82 Aligned_cols=111 Identities=34% Similarity=0.693 Sum_probs=97.6
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHh--hcCCccCCCCCCCccccc----
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE--KYKGIFIPPLPEKSAVEK---- 98 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~--~~p~~~iP~lP~k~~~~~---- 98 (403)
.+.|.|+||.+++++ +.|+|.|++++|+|....+.|+|||+||.|||++|.. .|||++|||+|+|+.++.
T Consensus 2 ~l~i~vsD~~~~~d~----V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~k 77 (141)
T cd07291 2 SLQIDIPDALSERDK----VKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREK 77 (141)
T ss_pred ccEEEeccccccCCC----EEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHHh
Confidence 578999999999876 7999999999999999999999999999999999996 679999999999998742
Q ss_pred --------cCC-CHHHHHHH--------------HHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 99 --------FRF-SAEFIEMR--------------RQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 99 --------~~~-~~~~i~~R--------------~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
..+ ..+|++.| +.+||+||++|++||.|+.++.|+.||+.+
T Consensus 78 ~~kl~~~~~~~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~~ 141 (141)
T cd07291 78 MQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEYD 141 (141)
T ss_pred hhhcccCcccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhCCeeccCcchhhhccCC
Confidence 022 35677755 356999999999999999999999999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting |
| >cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-26 Score=195.63 Aligned_cols=194 Identities=18% Similarity=0.237 Sum_probs=180.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD---ALGKAFSELGMKSEALSVKL 261 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~---~L~~~~~~~~~~~~~~~~~~ 261 (403)
|+|++|.+.+.|+..|+.+|+.+.+.+..+++++++++.++.+||.++..|+.+|.. .|+..+..+++++..+....
T Consensus 1 d~D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~ 80 (198)
T cd07630 1 DVDEFFQKERDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENI 80 (198)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999854 78999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHH
Q 043025 262 QREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESED 341 (403)
Q Consensus 262 ~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~ 341 (403)
..++......|+++|++|++++.|+|++|.+|.+++++|+++...+.+++.+ |. ..++.+.+.
T Consensus 81 ~~~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~~~~~~~~~a~k~l~Kar~~----------k~-------~~ae~~~~~ 143 (198)
T cd07630 81 EVVAGNNENTLGLTLDLYSRYSESEKDMLFRRTCKLIEFENASKALEKAKPQ----------KK-------EQAEEAKKK 143 (198)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh----------hH-------HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988865322 22 236677788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 342 STRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 342 ~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
++.+|+.|+..++.||.+|+..|..+|+++|..|++.+++++++.++.|.+.+.
T Consensus 144 a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~~~~~ 197 (198)
T cd07630 144 AETEFEEISSLAKKELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLTKTLE 197 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999998763
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=192.86 Aligned_cols=110 Identities=28% Similarity=0.605 Sum_probs=96.6
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhh--cCCccCCCCCCCcccccc---
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEK--YKGIFIPPLPEKSAVEKF--- 99 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~--~p~~~iP~lP~k~~~~~~--- 99 (403)
.+.|.|+||.++++| +.|+|.+++++|.|....+.|+|||+||.|||++|..+ |||++|||+|+|+.++..
T Consensus 2 ~l~v~isD~~~~~d~----V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~~k 77 (141)
T cd07292 2 ALQVDISDALSERDK----VKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREK 77 (141)
T ss_pred ceEEEcccccccCCc----eEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchHHH
Confidence 578999999999987 79999999999999999999999999999999999955 899999999999987421
Q ss_pred ---------CCC-HHHHH--------------HHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 100 ---------RFS-AEFIE--------------MRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 100 ---------~~~-~~~i~--------------~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
++. ++|.. +|+.+||.||++|++||+|++|..|+.||+.
T Consensus 78 ~~klg~~~~~~~~ee~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~ 140 (141)
T cd07292 78 LQKLGEGEGSMTKEEFTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEY 140 (141)
T ss_pred HHhhccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcchhheecc
Confidence 222 33442 6668899999999999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo |
| >cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=192.30 Aligned_cols=193 Identities=18% Similarity=0.272 Sum_probs=178.1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 043025 182 PVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKL 261 (403)
Q Consensus 182 ~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~ 261 (403)
.+..+|++|.++++|++.|+.+|.++.++..+++++..+++.++.+||..|+.|+.+|+ .|+.+++.+|++++..+...
T Consensus 8 ~~~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~-~l~~~le~~g~~~d~~~~~~ 86 (201)
T cd07622 8 RLRNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEK-EMGDGLQKAGHYMDSYAASI 86 (201)
T ss_pred cCCCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999995 79999999999999998887
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHH
Q 043025 262 QREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESED 341 (403)
Q Consensus 262 ~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~ 341 (403)
...+.. ...|.+||++|..|+.++|.+++.|+.+..+++.+.+.+.+++.. ++.+++.
T Consensus 87 ~~~~~~-~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~---------------------l~~~ve~ 144 (201)
T cd07622 87 DNGLED-EELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ---------------------GEEAVKE 144 (201)
T ss_pred HHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHH
Confidence 776654 578999999999999999999999999999999998877766433 6778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 342 STRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 342 ~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
++..++.+++.++.|+.+|+..|..||+.+|.+||..||+||+++++.|+++..++
T Consensus 145 a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~~~~~~ 200 (201)
T cd07622 145 AKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQTWTNIKECL 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999998765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and |
| >cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3 | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.8e-28 Score=190.65 Aligned_cols=110 Identities=26% Similarity=0.481 Sum_probs=100.6
Q ss_pred EEEEEcCceEeC-CCCcceEEEEEEEEecCCCCCCC--------ceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccc
Q 043025 26 LSVSVTDPVKLG-NGVQAYISYRVITKTNFPEYQGP--------EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAV 96 (403)
Q Consensus 26 ~~v~V~~~~~~~-~~~~~~~~y~i~~~~~~~~~~~~--------~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~ 96 (403)
|+|.|+++.... ++.+.|++|.|.+.++.+.|... .|.|+||||||.|||+.|...||++.+||||+|+.+
T Consensus 2 ~~v~vp~~~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~ 81 (120)
T cd06868 2 LDLTVPEYQEIRGKTSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF 81 (120)
T ss_pred CceecCCceeecCCCCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc
Confidence 678999988775 56789999999999888877654 689999999999999999999999999999999988
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 97 EKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 97 ~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+ ++++|++||.+|+.||++|++||.|++|+.|+.||..+
T Consensus 82 ~----~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~ 120 (120)
T cd06868 82 V----SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGVK 120 (120)
T ss_pred C----CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcCC
Confidence 6 89999999999999999999999999999999999753
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. |
| >cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=186.11 Aligned_cols=110 Identities=28% Similarity=0.440 Sum_probs=100.8
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccC-CCCCCCccccccCCCHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFI-PPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~i-P~lP~k~~~~~~~~~~~ 104 (403)
+.|.|+||.++++|+++|++|.|.+.. ...+++..|.|.||||||.|||+.|...+|+.+. ||+|+|++++ +++++
T Consensus 1 ~~~~v~~~~~~~~~~~~yv~Y~I~v~~-~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~~--~~~~~ 77 (112)
T cd07301 1 LLFEVTDANVVQDAHSKYVLYTIYVIQ-TGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLRK--NFTAE 77 (112)
T ss_pred CEEEECCCeEeccCCcCEEEEEEEEEe-cCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCcccC--CCCHH
Confidence 468999999999999999999999975 3345677899999999999999999999998754 5999999998 89999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
||++||.+|+.||+.|++||.|+.++.|+.||..
T Consensus 78 ~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~l 111 (112)
T cd07301 78 TIAKRSRAFEQFLCHLHSLPELRASPAFLEFFYL 111 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHhcChHHHHHhCC
Confidence 9999999999999999999999999999999964
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development. |
| >cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15 | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=186.40 Aligned_cols=108 Identities=31% Similarity=0.455 Sum_probs=96.0
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEec--CCCCCCCceEEeeccchHHHHHHHHHhhcCCcc-----CCCCCCCccccc
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTN--FPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIF-----IPPLPEKSAVEK 98 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~--~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~-----iP~lP~k~~~~~ 98 (403)
-.+.|+||+++++| |++|.|.+.+. .+.++...+.|+||||||.|||..|...|++.+ +||+|+|.+++
T Consensus 3 ~~~~V~dp~~~~~g---yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~g- 78 (118)
T cd07288 3 RFYSVTDPRTHPKG---YTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVFG- 78 (118)
T ss_pred eEEEecCCcCcCCC---cEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceeec-
Confidence 36899999999876 99999998742 223344689999999999999999999887754 99999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 99 FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 99 ~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++++||++||.+|+.||++|++||.|++|+.|+.||+.
T Consensus 79 -~f~~~fIeeRR~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 117 (118)
T cd07288 79 -RFEAAVIEERRNAAEAMLLFTVNIPALYNSPQLKEFFRD 117 (118)
T ss_pred -cCCHHHHHHHHHHHHHHHHHHhCChhhcCChHHHHHHhc
Confidence 899999999999999999999999999999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t |
| >KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.1e-28 Score=183.69 Aligned_cols=117 Identities=39% Similarity=0.720 Sum_probs=108.7
Q ss_pred CCCcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC
Q 043025 22 SQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF 101 (403)
Q Consensus 22 ~~~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~ 101 (403)
|..++.|.|.+|...++|.+.||.|.|...|++|.|......|+||||||+|||..|...-.-+.+||||.|.++. .+
T Consensus 14 p~nfLeI~V~nPrt~~~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~--~~ 91 (144)
T KOG2527|consen 14 PENFLEIDVINPRTHGDGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFR--QL 91 (144)
T ss_pred ccceEEEEeeCCcccccccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHh--cC
Confidence 4569999999999999999999999999999999999999999999999999999999988888999999999987 32
Q ss_pred -CHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccCh
Q 043025 102 -SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 140 (403)
Q Consensus 102 -~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~ 140 (403)
..+|||+||++|+.||+.|+.||.+.++..++.||.+.-
T Consensus 92 ~fre~IEeRrqgLe~fl~kVaghpL~q~~~~Lh~Flq~~~ 131 (144)
T KOG2527|consen 92 PFREFIEERRQGLEVFLRKVAGHPLLQNERCLHLFLQSEL 131 (144)
T ss_pred chHHHHHHHHHHHHHHHHHHhCchhhhccHHHHHHHHhhh
Confidence 339999999999999999999999999999999998764
|
|
| >cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42 | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-27 Score=185.49 Aligned_cols=103 Identities=34% Similarity=0.565 Sum_probs=93.8
Q ss_pred EEEcCceEeCCC-CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc-------c
Q 043025 28 VSVTDPVKLGNG-VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK-------F 99 (403)
Q Consensus 28 v~V~~~~~~~~~-~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~-------~ 99 (403)
|.|+|+.+.++| .++|++|.|.+.+ |.|+||||||.|||..|...||++++||||+|..+.. .
T Consensus 2 ~~i~~~~~~~~~~~~~y~~Y~I~~~~---------~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~ 72 (112)
T cd06867 2 IQIVDAGKSSEGGSGSYIVYVIRLGG---------SEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSKA 72 (112)
T ss_pred cEEccCccccCCCccCEEEEEEEeee---------EEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhccccccc
Confidence 689999999876 5799999998752 9999999999999999999999999999999997642 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 100 RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 100 ~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+++++||++||++|+.||+.|+.||.|+.|+.|+.||+++
T Consensus 73 ~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd06867 73 KNDAKIIERRKRMLQRFLNRCLQHPILRNDIVFQKFLDPN 112 (112)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhcChhhccCcHHHHhcCCC
Confidence 5799999999999999999999999999999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back |
| >cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6 | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-27 Score=186.70 Aligned_cols=110 Identities=36% Similarity=0.670 Sum_probs=99.0
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhh--cCCccCCCCCCCccccc----
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEK--YKGIFIPPLPEKSAVEK---- 98 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~--~p~~~iP~lP~k~~~~~---- 98 (403)
.+.|.|+|+..++ .++.|+|.+++++|+|....+.|+|||+||.|||++|..+ |||++|||+|+|..+..
T Consensus 2 ~~~~~i~da~~~~----~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k 77 (141)
T cd06892 2 SLQVDISDALSER----DKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREK 77 (141)
T ss_pred ceeeecccccccC----CeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccce
Confidence 5788999988776 4789999999999999999999999999999999999976 89999999999986510
Q ss_pred --------cCCCHHHHHHHHHHH---------------HHHHHHHhcCccccCChhhhccccc
Q 043025 99 --------FRFSAEFIEMRRQGL---------------DLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 99 --------~~~~~~~i~~R~~~L---------------~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
..++.+|+++|+..| +.||++|+.||.|+++..|+.||+.
T Consensus 78 ~~klg~~d~~~~~ef~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~ 140 (141)
T cd06892 78 LQKLGEGEGSMTKEEFEKMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFLEY 140 (141)
T ss_pred eeecccCccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCeeecCHhHHhhhcC
Confidence 147899999999999 5899999999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som |
| >cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=185.00 Aligned_cols=110 Identities=30% Similarity=0.511 Sum_probs=100.1
Q ss_pred EEEEcCceEeCCC--CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCc---cCCCCCCCcccc--cc
Q 043025 27 SVSVTDPVKLGNG--VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI---FIPPLPEKSAVE--KF 99 (403)
Q Consensus 27 ~v~V~~~~~~~~~--~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~---~iP~lP~k~~~~--~~ 99 (403)
+|.|+++..++++ .++|++|.|.+.+..| .+..|.|+||||||.|||..|...||+. .+||||+|+.++ ..
T Consensus 4 ~i~i~~~~~~~~~~~~~~yv~Y~I~v~~~~~--~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~~~ 81 (120)
T cd07280 4 DVNVGDYTIVGGDTGGGAYVVWKITIETKDL--IGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRV 81 (120)
T ss_pred EEEcCCCeEECCCCCCCCEEEEEEEEEeCCC--CCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCcccccccc
Confidence 7999999999755 6899999999988654 3578999999999999999999999997 899999999987 23
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 100 RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 100 ~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++++||++|+++|+.||+.|+.||.|+.|+.|+.||.+
T Consensus 82 ~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 120 (120)
T cd07280 82 NLNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVKEFLLP 120 (120)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCHhhccChHHHHhhCC
Confidence 689999999999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway. |
| >cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=180.98 Aligned_cols=107 Identities=31% Similarity=0.474 Sum_probs=93.6
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCC--CCCceEEeeccchHHHHHHHHHhhcCC-----ccCCCCCCCcccccc
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEY--QGPEKIVIRRYSDFVWLRDRLFEKYKG-----IFIPPLPEKSAVEKF 99 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~--~~~~~~v~RRysdF~~L~~~L~~~~p~-----~~iP~lP~k~~~~~~ 99 (403)
..+|+||+++++| |++|.|.+++..... +...|.|+||||||.|||+.|...||+ .++||+|+|..++
T Consensus 4 ~~~V~dp~~~~~g---yt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~g-- 78 (118)
T cd07287 4 FYTVTDPRRHPKG---YTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVFG-- 78 (118)
T ss_pred eEEecCCeEcCCC---eEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceeec--
Confidence 4679999999866 999999987532111 125799999999999999999998874 4689999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 100 RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 100 ~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++++|||+||.+|+.||++|++||.|++|+.|+.||..
T Consensus 79 ~~d~~fIe~RR~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 79 RFDESVIEERRQCAEDLLQFSANIPALYNSSQLEDFFKG 117 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChHHHHHhcC
Confidence 899999999999999999999999999999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma |
| >cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=178.07 Aligned_cols=96 Identities=41% Similarity=0.671 Sum_probs=90.1
Q ss_pred ceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHHHHHH
Q 043025 33 PVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQG 112 (403)
Q Consensus 33 ~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~ 112 (403)
|++.|.+. +|++|.|.+.. ..|.|.||||||.|||..|...||++.+||||+|..++ +++++|+++||.+
T Consensus 9 ~~~~g~~~-~y~~Y~i~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~--~~~~~~ie~Rr~~ 78 (105)
T cd06866 9 PEKKGLFL-KHVEYEVSSKR-------FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGG--SADREFLEARRRG 78 (105)
T ss_pred ccccCccc-CCEEEEEEEec-------CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCcccc--CCCHHHHHHHHHH
Confidence 67777665 99999999864 57999999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHHHHhcCccccCChhhhccccc
Q 043025 113 LDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 113 L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
|+.||+.|+.||.|++|+.|+.||+.
T Consensus 79 Le~fL~~l~~~p~l~~s~~l~~FL~~ 104 (105)
T cd06866 79 LSRFLNLVARHPVLSEDELVRTFLTE 104 (105)
T ss_pred HHHHHHHHhcChhhccChHHHhhcCC
Confidence 99999999999999999999999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. |
| >cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=180.73 Aligned_cols=182 Identities=19% Similarity=0.276 Sum_probs=166.0
Q ss_pred CChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLA-EAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQR 263 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~-~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~-~L~~~~~~~~~~~~~~~~~~~~ 263 (403)
+|++|.+++.+++.++..|. ++.++..+++++..+++.++.+||..|+.|+..|+. .|+.+++.+|++++..+.....
T Consensus 2 ~d~~F~~~e~~~~~~~~~L~~~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~a~D~~~~~~~~ 81 (187)
T cd07629 2 PDDEFTDIEAETKKYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDSTYLATEA 81 (187)
T ss_pred cchHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999995 899999999999999999999999999999999965 5999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHH
Q 043025 264 EAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDST 343 (403)
Q Consensus 264 ~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~ 343 (403)
+.......|.+||++|+.|+.+++.+|+.|+.+..+++.+.+.+ + + .+..+.
T Consensus 82 l~~~l~~~f~EpL~E~~~y~~s~k~vlk~R~~K~~Q~e~l~~~L------~---------------------e-~~~~~~ 133 (187)
T cd07629 82 LVGSLYYNINEPLSESAQFAGVVRELLKYRKLKHVQYEMTKDSL------L---------------------E-SALVAA 133 (187)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H---------------------H-HHHHHH
Confidence 99999999999999999999999999999999999999887776 0 1 112344
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 344 RRFETIV-RLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 344 ~~~~~i~-~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
.++..+. ..+..|+.||+++|..||+.+|.+||..|+.|++++++.|+++..
T Consensus 134 ~~~~~~~~~~~~~el~rF~~ek~~dl~~~l~~~a~~~~~~a~~~~~~W~~~~~ 186 (187)
T cd07629 134 SDDLVISSTIKQKDLPRFQREREADLREILKNYSKYHKDWAKQNLEAWKEAKA 186 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5667774 779999999999999999999999999999999999999999864
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20 | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.5e-26 Score=177.52 Aligned_cols=111 Identities=22% Similarity=0.370 Sum_probs=99.2
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCcc-CCCCCCCccccccCCCHHH
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIF-IPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~-iP~lP~k~~~~~~~~~~~~ 105 (403)
-+.|+....+.+++++|++|.|.+... ..|+...|.|.||||||.|||..|...+++++ .||||+|+.++ +++++|
T Consensus 2 ~~~i~~~~~~~~~~~~yv~Y~i~~~~~-g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~~--~~~~~~ 78 (114)
T cd07300 2 LFEIPSARIIEQTISKHVVYQIIVIQT-GSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLTG--NFSEEI 78 (114)
T ss_pred eEEecCceeeccCCcceEEEEEEEEEe-cCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCcccC--CCCHHH
Confidence 377888888877788999999987433 22667789999999999999999999998865 78999999999 899999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhcccccCh
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 140 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~ 140 (403)
|++||.+|+.||+.|++||.|+.++.|+.||+.++
T Consensus 79 ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~ 113 (114)
T cd07300 79 IAERRVALRDYLTLLYSLRFVRRSQAFQDFLTHPE 113 (114)
T ss_pred HHHHHHHHHHHHHHHhcCHhhhcChHHHHHhCCcc
Confidence 99999999999999999999999999999999874
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom |
| >cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21 | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-26 Score=178.37 Aligned_cols=111 Identities=25% Similarity=0.430 Sum_probs=100.3
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCcc-CCCCCCCccccccCCCHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIF-IPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~-iP~lP~k~~~~~~~~~~~ 104 (403)
+.+.|.++..+++|.++|++|.|.+.+.. .++...|.|+||||||.|||+.|...||+.+ .||||+|..++ +++++
T Consensus 1 ~~~~i~~~~~~~~~~~~yv~Y~I~v~~~~-~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~~--~~~~~ 77 (112)
T cd07279 1 LKFEIVSARTVKEGEKKYVVYQLAVVQTG-DPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLMG--NFSSE 77 (112)
T ss_pred CeEEeccCeEEcCCCeeEEEEEEEEEECC-CCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeecc--cCCHH
Confidence 35778899999988899999999998653 3345679999999999999999999999986 57999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
||++|+.+|+.||+.|++||.|++|+.|+.||+.+
T Consensus 78 ~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 112 (112)
T cd07279 78 LIAERSRAFEQFLGHILSIPNLRDSKAFLDFLQGP 112 (112)
T ss_pred HHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhCCC
Confidence 99999999999999999999999999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal |
| >cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=176.59 Aligned_cols=111 Identities=25% Similarity=0.320 Sum_probs=96.9
Q ss_pred EEEEcCceEeCC--CCcceEEEEEEEEecC---CCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC
Q 043025 27 SVSVTDPVKLGN--GVQAYISYRVITKTNF---PEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF 101 (403)
Q Consensus 27 ~v~V~~~~~~~~--~~~~~~~y~i~~~~~~---~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~ 101 (403)
.|+|+..+...+ +.+.|++|.|.++... .+.....|.|.||||||.+||..|...||++.+||||+|..++ ++
T Consensus 4 ~i~I~~~~~~~~~~~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~~--~~ 81 (119)
T cd06877 4 RVSIPYVEMRRDPSNGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIFG--PK 81 (119)
T ss_pred eEEeeeEEEeecCCCCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCcccC--CC
Confidence 566666555533 6689999999998631 2344568999999999999999999999999999999999999 79
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 102 SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 102 ~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+++||++||.+||.||+.|+.||.++.|+.|+.||+++
T Consensus 82 ~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~FL~~~ 119 (119)
T cd06877 82 SYEFLESKREIFEEFLQKLLQKPELRGSELLYDFLSPN 119 (119)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcccccCHHHHHhCCCC
Confidence 99999999999999999999999999999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N |
| >cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19 | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-25 Score=179.96 Aligned_cols=109 Identities=30% Similarity=0.412 Sum_probs=91.8
Q ss_pred EEEcCceEeCCCCcceEEEEEEEEecC-----------CCCCCCceEEeeccchHHHHHHHHHhhcC--CccCCCCCCCc
Q 043025 28 VSVTDPVKLGNGVQAYISYRVITKTNF-----------PEYQGPEKIVIRRYSDFVWLRDRLFEKYK--GIFIPPLPEKS 94 (403)
Q Consensus 28 v~V~~~~~~~~~~~~~~~y~i~~~~~~-----------~~~~~~~~~v~RRysdF~~L~~~L~~~~p--~~~iP~lP~k~ 94 (403)
=.|+++++.|+|+++|++|+|.+.++. |.|....|.|.||||||.|||..|....+ .+..+++|+|.
T Consensus 6 ~~i~~~e~~g~g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P~k~ 85 (132)
T cd06893 6 KTITAKEYKGTGTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGPPKR 85 (132)
T ss_pred ceeecchhcCCCCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCCCCcc
Confidence 368899999999999999999998754 45666899999999999999999997532 22234455554
Q ss_pred c----ccccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 95 A----VEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 95 ~----~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
. ++ +++++||++||.+||.||++|++||.|+.|+.|+.||..
T Consensus 86 ~p~lp~g--~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~ 131 (132)
T cd06893 86 LFDLPFG--NMDKDKIEARRGLLETFLRQLCSIPEISNSEEVQEFLAY 131 (132)
T ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHcCHhhhcCHHHHHHHcc
Confidence 3 45 789999999999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found |
| >cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=172.38 Aligned_cols=106 Identities=26% Similarity=0.380 Sum_probs=95.5
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.|.|++++.+++|.++|++|.|.+.++ .+..|.|.||||||.+||+.|.. +|+. .||||+|+++++ +++++|
T Consensus 1 ~~~~v~~~~~~~~~~~~y~vY~I~v~~~----~~~~w~v~RRYsdF~~L~~~L~~-~~~~-~~~lP~K~~~~~-~~~~~f 73 (107)
T cd06872 1 LSCRVLGAEIVKSGSKSFAVYSVAVTDN----ENETWVVKRRFRNFETLHRRLKE-VPKY-NLELPPKRFLSS-SLDGAF 73 (107)
T ss_pred CeeEEeeeEEEecCCccEEEEEEEEEEC----CCceEEEEehHHHHHHHHHHHHh-ccCC-CCCCCCccccCC-CCCHHH
Confidence 4689999999999999999999999864 34689999999999999999986 6765 679999999841 689999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
|++|+.+||.||+.|+++|.++.|+.|+.||..
T Consensus 74 ie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL~~ 106 (107)
T cd06872 74 IEERCKLLDKYLKDLLVIEKVAESHEVWSFLSA 106 (107)
T ss_pred HHHHHHHHHHHHHHHhcChhhhcCHHHHHHhcc
Confidence 999999999999999999999999999999963
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom |
| >cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-25 Score=175.72 Aligned_cols=108 Identities=31% Similarity=0.461 Sum_probs=95.0
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCC--CCCceEEeeccchHHHHHHHHHhhcCC----ccCCCCCCCcccccc
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEY--QGPEKIVIRRYSDFVWLRDRLFEKYKG----IFIPPLPEKSAVEKF 99 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~--~~~~~~v~RRysdF~~L~~~L~~~~p~----~~iP~lP~k~~~~~~ 99 (403)
..++|+||++++ ++|++|.|.+.+....+ +...|.|+||||||.+||+.|...||+ ..+||||+|+.++
T Consensus 3 ~~~~V~d~~~~~---~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~g-- 77 (117)
T cd06881 3 RSFTVTDTRRHK---KGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYFG-- 77 (117)
T ss_pred EEEEecCcceec---CceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCcccC--
Confidence 468999999986 46999999998632211 235799999999999999999999864 3579999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 100 RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 100 ~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+++++||++||.+|+.||+.|++||.|+.++.|+.||+.
T Consensus 78 ~~~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~~Fl~~ 116 (117)
T cd06881 78 RFDAAVIEERRQAILELLDFVGNHPALYQSSAFQQFFEE 116 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHHhcc
Confidence 899999999999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont |
| >cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13 | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-25 Score=174.71 Aligned_cols=111 Identities=24% Similarity=0.367 Sum_probs=101.1
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.+.|+++++.++|.+.|++|.|.+....+......|.|.||||||.+||+.|...+|...+|+||+|..++ ++++++
T Consensus 5 ~~~~i~~~~~~~~~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~~--~~~~~~ 82 (120)
T cd06873 5 LTAVIINTGIVKEHGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTFN--NLDRAF 82 (120)
T ss_pred EEEEEeccEEEccCCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCcccC--CCCHHH
Confidence 678999999999999999999999987555445578999999999999999999999999999999999998 899999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCh----hhhccccc
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSE----DLKTFLQA 138 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~----~~~~FL~~ 138 (403)
|++|+.+|+.||+.|+++|.|++++ .+..||++
T Consensus 83 ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~l~~FL~~ 119 (120)
T cd06873 83 LEKRRKMLNQYLQSLLNPEVLDANPGLQEIVLDFLEP 119 (120)
T ss_pred HHHHHHHHHHHHHHHhCCHhhccCHHHHHHHHHHcCC
Confidence 9999999999999999999999994 66777764
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug |
| >cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-22 Score=172.41 Aligned_cols=202 Identities=14% Similarity=0.192 Sum_probs=185.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAH 266 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~ 266 (403)
|....-+.+||..++.++..|+..+..++++...|++...+|+.++..++.+|++.|..+++.+++++..+.+....+++
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~d~~q~qv~ 82 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFAECLAALQDYRQAEVE 82 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc-CcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 267 QLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT-RSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 267 ~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~-~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
.+...|.+||++|...|.++++.++. |..+.+++.+++.+++++++. ++++. +|.+++.+++.++.+
T Consensus 83 ~l~~~v~epLk~Y~~l~k~~k~~~K~-------~~~ar~~~~~~~~~leklk~~~~~d~~-----~i~eaE~~l~~a~~d 150 (211)
T cd07598 83 RLEAKVVQPLALYGTICKHARDDLKN-------TFTARNKELKQLKQLEKLRQKNPSDRQ-----IISQAESELQKASVD 150 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCchhh-----HHHHHHHHHHHHHHH
Confidence 99999999999999999999998732 777777777788888998753 34443 677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
|+.++..|..|+.+|+..|..||+.+|.+|+..++.+|.++++.|......+.++
T Consensus 151 ~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~~ 205 (211)
T cd07598 151 ANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQNI 205 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999888765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=168.81 Aligned_cols=103 Identities=21% Similarity=0.466 Sum_probs=94.0
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHH
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~ 104 (403)
.+.|.|++.....++.++|++|.|.+. ..|.|.||||||.+||..|...+|++.+||||+|..++ ++++
T Consensus 3 ~~~i~Ip~~~~~~~~~~~yvvY~I~~~--------~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~~---~~~~ 71 (106)
T cd06886 3 SVPISIPDYKHVEQNGEKFVVYNIYMA--------GRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPFS---LSEQ 71 (106)
T ss_pred cceEecCCcceEcCCCCcEEEEEEEEc--------CCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcCC---CCHH
Confidence 468899998777666679999999874 26899999999999999999999999999999999885 6899
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+|++||.+|+.||+.|++||.|++|+.|+.||+.
T Consensus 72 ~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~ 105 (106)
T cd06886 72 QLDARRRGLEQYLEKVCSIRVIGESDIMQDFLSD 105 (106)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccCHHHHHHhcc
Confidence 9999999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface |
| >cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16 | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-24 Score=167.23 Aligned_cols=107 Identities=28% Similarity=0.542 Sum_probs=94.6
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.|.|.+.+...++ ++|++|.|.+.... +..|.|.||||||.+||..|...+|+ .+||||+|++++. +++++|
T Consensus 4 ~~~~i~~~~~~~~~-~~~~vY~I~v~~~~----~~~~~v~RRYsdF~~L~~~L~~~~~~-~~~~lP~K~~~~~-~~~~~f 76 (110)
T cd07276 4 IRPPILGYEVMEER-ARFTVYKIRVENKV----GDSWFVFRRYTDFVRLNDKLKQMFPG-FRLSLPPKRWFKD-NFDPDF 76 (110)
T ss_pred ccceeeeEEEeecC-CCeEEEEEEEEECC----CCEEEEEEehHHHHHHHHHHHHHCCC-CCCCCCCcceecc-cCCHHH
Confidence 37778887766653 68999999998742 46899999999999999999999998 6899999998862 589999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
|++||.+|+.||+.|++||.|++++.++.||..+
T Consensus 77 ie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 77 LEERQLGLQAFVNNIMAHKDIAKCKLVREFFCLD 110 (110)
T ss_pred HHHHHHHHHHHHHHHhcCHhhhcChHHHHHhccC
Confidence 9999999999999999999999999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking. |
| >cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=165.22 Aligned_cols=106 Identities=26% Similarity=0.337 Sum_probs=95.1
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
++|+|++.... .++|++|.|.+... +..|.|.||||||.+||+.|...+|+..+||||+|..++..++++++
T Consensus 1 ~~v~ip~~~~~---~~~~~~Y~I~v~~~-----~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~~ 72 (108)
T cd06897 1 LEISIPTTSVS---PKPYTVYNIQVRLP-----LRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLSTSSNPKL 72 (108)
T ss_pred CeEEcCCeEEc---CCCeEEEEEEEEcC-----CceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecccCCCHHH
Confidence 36788887666 35799999999863 57899999999999999999999999999999999998744689999
Q ss_pred HHHHHHHHHHHHHHHhcCc--cccCChhhhcccccC
Q 043025 106 IEMRRQGLDLFVNRIASHP--ELQQSEDLKTFLQAD 139 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~--~l~~~~~~~~FL~~~ 139 (403)
|++|+.+|+.||+.|++|| .+++|+.|+.||+.+
T Consensus 73 ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~~FL~~~ 108 (108)
T cd06897 73 VEERRVGLEAFLRALLNDEDSRWRNSPAVKEFLNLP 108 (108)
T ss_pred HHHHHHHHHHHHHHHHcCCccchhcCHHHHHHhCCC
Confidence 9999999999999999999 999999999999753
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. |
| >cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=164.32 Aligned_cols=105 Identities=30% Similarity=0.524 Sum_probs=89.7
Q ss_pred EEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHH
Q 043025 28 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIE 107 (403)
Q Consensus 28 v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~ 107 (403)
|.|.......++.++|++|.|.+.. .+..|.|+||||||.+||+.|...||+.. ||||+|+.++. +++++||+
T Consensus 5 ~~i~~~~~~~~~~~~~~~Y~I~v~~-----~~~~~~v~RRYseF~~L~~~L~~~~~~~~-~~lP~K~~~~~-~~~~~~ie 77 (109)
T cd06870 5 VSIPSSDEDREKKKRFTVYKVVVSV-----GRSSWFVFRRYAEFDKLYESLKKQFPASN-LKIPGKRLFGN-NFDPDFIK 77 (109)
T ss_pred eeeccceeeccCCCCeEEEEEEEEE-----CCeEEEEEeehHHHHHHHHHHHHHCcccC-cCCCCCccccc-CCCHHHHH
Confidence 3344333334445799999999876 35789999999999999999999999984 48999999873 68999999
Q ss_pred HHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 108 MRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 108 ~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+||.+|+.||+.|++||.|++++.|+.||+.+
T Consensus 78 ~Rr~~Le~fL~~ll~~p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 78 QRRAGLDEFIQRLVSDPKLLNHPDVRAFLQMD 109 (109)
T ss_pred HHHHHHHHHHHHHhCCHhhhcChHHHHHhCcC
Confidence 99999999999999999999999999999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity. |
| >cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=165.39 Aligned_cols=110 Identities=27% Similarity=0.443 Sum_probs=97.3
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC--------ccCCCCCCCccc
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG--------IFIPPLPEKSAV 96 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~--------~~iP~lP~k~~~ 96 (403)
.|.++|+|+++. .|.++|++|.|.+... ++..|.|+|||+||.+||..|...||. +++|+||+|..+
T Consensus 3 ~i~~~I~~~~~~-~~~~~y~vY~I~v~~~----~~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~ 77 (123)
T cd06882 3 AVSATIADIEEK-RGFTNYYVFVIEVKTK----GGSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYV 77 (123)
T ss_pred cEEEEEeeeeEE-eCCCCEEEEEEEEEEc----CCCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeec
Confidence 478999998876 6678999999999863 346799999999999999999999995 589999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhcCcc-ccCChhhhcccccChhh
Q 043025 97 EKFRFSAEFIEMRRQGLDLFVNRIASHPE-LQQSEDLKTFLQADEET 142 (403)
Q Consensus 97 ~~~~~~~~~i~~R~~~L~~fl~~~~~~~~-l~~~~~~~~FL~~~~~~ 142 (403)
+ +.+ +|+++||.+|+.||+.|+++|. ++.|+.|+.||.....+
T Consensus 78 ~--~~~-~~~e~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~~~d 121 (123)
T cd06882 78 G--RKA-EIAERRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQTESD 121 (123)
T ss_pred C--ccH-HHHHHHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCCccc
Confidence 8 544 9999999999999999999985 99999999999987654
|
The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox |
| >cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-23 Score=160.82 Aligned_cols=100 Identities=23% Similarity=0.455 Sum_probs=90.0
Q ss_pred EEEcCceEeCC-CCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHH
Q 043025 28 VSVTDPVKLGN-GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFI 106 (403)
Q Consensus 28 v~V~~~~~~~~-~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i 106 (403)
|.|+++....+ +.++|++|.|.+. +.+.|.||||||.+||..|.+.+|++.+||||+|+.++ ++.++|
T Consensus 2 v~I~~~~~~~~~~~~~y~~Y~I~v~--------~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~---~~~~~i 70 (104)
T cd06885 2 FSIPDTQELSDEGGSTYVAYNIHIN--------GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLLP---LTPAQL 70 (104)
T ss_pred CccCCcceeccCCCCcEEEEEEEEC--------CcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCcccc---CCHHHH
Confidence 56677766654 6789999999874 35889999999999999999999999999999999986 788999
Q ss_pred HHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 107 EMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 107 ~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
++||.+|+.||+.|+.||.++.|+.|+.||..
T Consensus 71 e~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~~ 102 (104)
T cd06885 71 EERRLQLEKYLQAVVQDPRIANSDIFNSFLLN 102 (104)
T ss_pred HHHHHHHHHHHHHHhcChhhccCHHHHHHHHh
Confidence 99999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me |
| >cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.5e-23 Score=160.75 Aligned_cols=107 Identities=27% Similarity=0.407 Sum_probs=94.9
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.|+|+.....|+|.+.|++|.|.+..+ +..|.|.||||||.+||..|...+|+...|+||+|+.++ +++.+|
T Consensus 1 ~~v~IPs~~~~g~~~~~y~vY~I~v~~~-----~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~g--~~~~~~ 73 (118)
T cd07277 1 INVWIPSVFLRGKGSDAHHVYQVYIRIR-----DDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAIG--NKDAKF 73 (118)
T ss_pred CEEEcCcEEEecCCCCCEEEEEEEEEEC-----CCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCccC--CCCHHH
Confidence 3577777777788889999999999863 578999999999999999999999998899999999999 899999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhcccccCh
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 140 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~ 140 (403)
+++||.+||.||+.|+.| .+..++.|..||+-..
T Consensus 74 ie~Rr~~Le~yL~~ll~~-~~~~~~~~~~~~~~~~ 107 (118)
T cd07277 74 VEERRKRLQVYLRRVVNT-LIQTSPELTACPSKET 107 (118)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhCchhhcCCCHHH
Confidence 999999999999999997 6677777887777543
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways. |
| >cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25 | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-22 Score=162.36 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=96.6
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecC-----CCCCCCceEEeeccchHHHHHHHHHhhcCCc--cCCCCCCCcccc
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNF-----PEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI--FIPPLPEKSAVE 97 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~-----~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~--~iP~lP~k~~~~ 97 (403)
...|.|++...++++.+.|++|.|.+.... ++-....|.|.|||+||.+||..|...||+. ..+|+|+|+.++
T Consensus 8 ~w~~~I~~~~~~~~~~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~ppKk~~~ 87 (127)
T cd06878 8 KWRANIQSAEVTVEDDKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKWFK 87 (127)
T ss_pred cceEEEeeeEEEcCCCeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCCCccccc
Confidence 357888888877777789999999998642 2223457999999999999999999999975 344567777887
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 98 KFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 98 ~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+++++|+++||.+|+.||+.|+.+|.|+.|+.|..||++.
T Consensus 88 --~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~FLsp~ 127 (127)
T cd06878 88 --SIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYSFLSPS 127 (127)
T ss_pred --cCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHHHcCCC
Confidence 7899999999999999999999999999999999999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S |
| >cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=164.79 Aligned_cols=109 Identities=23% Similarity=0.416 Sum_probs=97.2
Q ss_pred EEEEcCceEeCC-CCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC--CH
Q 043025 27 SVSVTDPVKLGN-GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF--SA 103 (403)
Q Consensus 27 ~v~V~~~~~~~~-~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~--~~ 103 (403)
.|.|.+.....+ +.++|++|.|.+....++.....|.|.||||||.+||..|...||+..+||||+|+.++ .. +.
T Consensus 21 ~i~I~~~~~~~~~~~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~~--~~~~~~ 98 (133)
T cd06876 21 RVSIQSYISDVEEEGKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKIS--LKYSKT 98 (133)
T ss_pred eEEEeeEEeeecCCCceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCcccccc--CccCCH
Confidence 688888877653 35799999999987544333468999999999999999999999999999999999998 44 89
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccc
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQ 137 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~ 137 (403)
+++++||.+|+.||+.|+.+|.+++++.|+.||+
T Consensus 99 ~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~FLs 132 (133)
T cd06876 99 LLVEERRKALEKYLQELLKIPEVCEDEEFRKFLS 132 (133)
T ss_pred HHHHHHHHHHHHHHHHHHcCccccCChHHHHhhc
Confidence 9999999999999999999999999999999996
|
The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul |
| >cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-23 Score=162.52 Aligned_cols=95 Identities=25% Similarity=0.378 Sum_probs=87.3
Q ss_pred ceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHh
Q 043025 42 AYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIA 121 (403)
Q Consensus 42 ~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~fl~~~~ 121 (403)
.-+.|.|.+...-|+.....|.|.||||||.+||..|...+|++.+||+|+|+.++ +++++|||+||.+||.||++|+
T Consensus 43 ~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~~~p~~~lPplPpK~~l~--~~~~~fiEeRR~gLE~fLq~Ll 120 (138)
T cd06879 43 VDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLLR--MKNRALLEERRHSLEEWMGKLL 120 (138)
T ss_pred ceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHHHCCCCcCCCCCCccccc--CCCHHHHHHHHHHHHHHHHHHH
Confidence 45689999887655545568999999999999999999999999999999999999 8999999999999999999999
Q ss_pred cCccccCChhhhccccc
Q 043025 122 SHPELQQSEDLKTFLQA 138 (403)
Q Consensus 122 ~~~~l~~~~~~~~FL~~ 138 (403)
+||.++.++.|+.||+.
T Consensus 121 ~~p~l~~s~~v~~FLel 137 (138)
T cd06879 121 SDIDLSRSVPVASFLEL 137 (138)
T ss_pred cCccccCCHHHHHHhCC
Confidence 99999999999999985
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. |
| >cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=168.20 Aligned_cols=211 Identities=20% Similarity=0.238 Sum_probs=196.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG------------DALGKAFSELGMK 253 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~------------~~L~~~~~~~~~~ 253 (403)
....|...+++|..+...+.++...+++++++.+.++.++.+||..++.|+..+. ..++.++..+|.+
T Consensus 20 ~~~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~s~~ 99 (246)
T cd07597 20 FQEQWANSRERIRRLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSLSKH 99 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999998774 6789999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHhccc---CcchHHHHH
Q 043025 254 SEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN-AFRQQCELAETMKLKEINLDKLMLT---RSDKVGEAE 329 (403)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~-~~~~~~~~~~~l~~k~~~l~kl~~~---~~~ki~~l~ 329 (403)
+..++....+++..+...+.|+|+.|++++.|+++++.+|++ +..+++.+.+.+..++.++.++++. .+.-+++++
T Consensus 100 ~~~~s~~~~~~a~~~~~~vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~~~~~~e~ekl~ 179 (246)
T cd07597 100 FQLLSDLSEDEARAEEDGVLEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKPDVKGAEVDKLE 179 (246)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHH
Confidence 999999999999999999999999999999999999988884 5679999999999999999999854 456788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 330 IEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 330 ~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
+.|.+.++.+....++..+|..|+..|+..|+.... .+..+|.+|+..++.+|.++.++|+.+.+.+
T Consensus 180 ~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~~~l~~~W~~L~~~l 246 (246)
T cd07597 180 ASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYHSELANVWERLVPKL 246 (246)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999876 9999999999999999999999999998753
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-22 Score=158.83 Aligned_cols=106 Identities=25% Similarity=0.394 Sum_probs=95.2
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCH
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSA 103 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~ 103 (403)
|...|.|++.+.. ++|++|.|.+.. .+..|.|.||||||.+||..|...+ ++..|+||+|+.++ ++++
T Consensus 2 ~~~~v~I~~~~~~----~~~~~Y~I~V~~-----~~~~w~V~RRYseF~~L~~~L~~~~-~~~~~~~P~Kk~~~--~~~~ 69 (116)
T cd06875 2 PETKIRIPSAETV----EGYTVYIIEVKV-----GSVEWTVKHRYSDFAELHDKLVAEH-KVDKDLLPPKKLIG--NKSP 69 (116)
T ss_pred CCEEEEECCEEEE----CCEEEEEEEEEE-----CCeEEEEEecHHHHHHHHHHHHHHc-CcccCcCCCccccC--CCCH
Confidence 3457888877654 479999999976 3468999999999999999999999 67789999999999 8999
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
++|++||.+|+.||+.|++++.++.++.+..||..++.
T Consensus 70 ~~ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~FL~~~~~ 107 (116)
T cd06875 70 SFVEKRRKELEIYLQTLLSFFQKTMPRELAHFLDFHKY 107 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHhCCCce
Confidence 99999999999999999999999999999999998864
|
The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a |
| >cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=153.08 Aligned_cols=103 Identities=25% Similarity=0.412 Sum_probs=91.1
Q ss_pred EEEEEcCceEeCCC-CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHH
Q 043025 26 LSVSVTDPVKLGNG-VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 26 ~~v~V~~~~~~~~~-~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~ 104 (403)
+.|+|+.+....++ .++|++|.|.+..+ +..|.|.||||||.+||..|...++ +|+||+|.. + +++++
T Consensus 1 ~~V~Ip~~~~~~~~~~~~y~~Y~I~v~~~-----~~~~~v~RRYseF~~Lh~~L~~~~~---~p~~P~K~~-~--~~~~~ 69 (110)
T cd06880 1 IEVSIPSYRLEVDESEKPYTVFTIEVLVN-----GRRHTVEKRYSEFHALHKKLKKSIK---TPDFPPKRV-R--NWNPK 69 (110)
T ss_pred CEEEeCcEEEeeCCCCCCeEEEEEEEEEC-----CeEEEEEccHHHHHHHHHHHHHHCC---CCCCCCCCc-c--CCCHH
Confidence 47888888877654 47999999999863 4589999999999999999999987 899999997 4 58999
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 105 FIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
+|++||.+||.||+.|+.+|. .+..|..||+.+..
T Consensus 70 ~ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL~~~~~ 104 (110)
T cd06880 70 VLEQRRQGLEAYLQGLLKINE--LPKQLLDFLGVRHF 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHcCcc--ccHHHHHHhCCCCC
Confidence 999999999999999999998 68999999998763
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known. |
| >cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=154.87 Aligned_cols=106 Identities=30% Similarity=0.450 Sum_probs=88.3
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
+.+.|.+.. +.++|++|.|.+... .+....|.|+||||||.+||+.|... +. .||||+|+.++ ++++++
T Consensus 8 ~~~~i~~~~----~~~~~t~Y~I~v~~~--~~~~~~w~V~RRYsdF~~Lh~~L~~~--~~-~~plP~K~~~g--~~~~~~ 76 (120)
T cd06871 8 LTCVIEASQ----NIQSHTEYIIRVQRG--PSPENSWQVIRRYNDFDLLNASLQIS--GI-SLPLPPKKLIG--NMDREF 76 (120)
T ss_pred eEEEEecCC----CccCcEEEEEEEEEC--CcCCceeEEEeeHHHHHHHHHHHHHc--CC-CCCCCCccccC--CCCHHH
Confidence 455555433 346799999999763 23456899999999999999999863 33 45899999999 899999
Q ss_pred HHHHHHHHHHHHHHHhcCccccCChhhhcccccChhh
Q 043025 106 IEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEET 142 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~ 142 (403)
|++||.+|+.||+.|++||.+++++.++.||+.+...
T Consensus 77 ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~~ 113 (120)
T cd06871 77 IAERQQGLQNYLNVILMNPILASCLPVKKFLDPNNYS 113 (120)
T ss_pred HHHHHHHHHHHHHHHHcChhhccCHHHHHhcCcccCC
Confidence 9999999999999999999999999999999877644
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. |
| >cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-21 Score=151.81 Aligned_cols=90 Identities=28% Similarity=0.377 Sum_probs=81.0
Q ss_pred CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHHHHHHHHHHHHH
Q 043025 40 VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNR 119 (403)
Q Consensus 40 ~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~fl~~ 119 (403)
...|++|.|.+..+..+ ...|.|.||||||.|||..|...||++.+||||+|.. .++|+||.+|+.||+.
T Consensus 30 ~~~~~~Y~I~V~~~~~~--~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~--------~~~E~Rr~~Le~yL~~ 99 (119)
T cd06869 30 SKHHYEFIIRVRREGEE--YRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK--------LPREKLRLSLRQYLRS 99 (119)
T ss_pred CCceEEEEEEEEECCCC--CCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch--------hHHHHHHHHHHHHHHH
Confidence 46899999999985321 3589999999999999999999999999999999986 4578899999999999
Q ss_pred HhcCccccCChhhhcccccC
Q 043025 120 IASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 120 ~~~~~~l~~~~~~~~FL~~~ 139 (403)
|+.+|.|++|+.|..||..+
T Consensus 100 Ll~~p~l~~s~~~~~FL~~~ 119 (119)
T cd06869 100 LLKDPEVAHSSILQEFLTSD 119 (119)
T ss_pred HhcChhhhcChHHHHhhCCC
Confidence 99999999999999999864
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. |
| >smart00312 PX PhoX homologous domain, present in p47phox and p40phox | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-21 Score=148.83 Aligned_cols=102 Identities=40% Similarity=0.659 Sum_probs=87.5
Q ss_pred cCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc-cCCCHHHHHHH
Q 043025 31 TDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK-FRFSAEFIEMR 109 (403)
Q Consensus 31 ~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~-~~~~~~~i~~R 109 (403)
.++.+.+++...|++|.|.+.. ....|.|.|||+||.+||+.|...+|+..+|+||+|..++. .+.+++++++|
T Consensus 2 ~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~~~~~~~~~i~~R 76 (105)
T smart00312 2 LEPEKIGDGKHYYYVIEIETKT-----GLEEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGRLNNFSEEFIEKR 76 (105)
T ss_pred CCceecCCCceEEEEEEEEECC-----CCceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhcccCCcCCHHHHHHH
Confidence 4556666666677777776653 23689999999999999999999999999999999998862 25789999999
Q ss_pred HHHHHHHHHHHhcCccccC-Chhhhcccc
Q 043025 110 RQGLDLFVNRIASHPELQQ-SEDLKTFLQ 137 (403)
Q Consensus 110 ~~~L~~fl~~~~~~~~l~~-~~~~~~FL~ 137 (403)
+.+|+.||+.|+.+|.++. |+.|..||+
T Consensus 77 ~~~L~~yL~~l~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 77 RRGLERYLQSLLNHPELINESEVVLSFLE 105 (105)
T ss_pred HHHHHHHHHHHHcCHhhhccChHHHHhcC
Confidence 9999999999999999999 999999985
|
Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform. |
| >cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23 | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=149.19 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=89.3
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
++|+|+++...++|.++|++|.|.+.. .+..|.|.||||||.+||..|...+|....||||+|+.++ +.++++
T Consensus 1 ~~i~Ip~~~~~~~~~~~y~vY~I~v~~-----~~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~g--~~~~~~ 73 (127)
T cd06874 1 IKITIPRYVLRGQGKDEHFEFEVKITV-----LDETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLFG--NKSERV 73 (127)
T ss_pred CEEEECCeEEecCCCCcEEEEEEEEEE-----CCcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceecC--CCCHHH
Confidence 478999998888888899999999876 3467999999999999999999999998899999999999 789999
Q ss_pred HHHHHHHHHHHHHHHhcC-ccccCChhh
Q 043025 106 IEMRRQGLDLFVNRIASH-PELQQSEDL 132 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~-~~l~~~~~~ 132 (403)
+++||.+|+.||+.|++. +.+..++.+
T Consensus 74 ie~Rr~~Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 74 AKERRRQLETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred HHHHHHHHHHHHHHHHHhchhccCCccc
Confidence 999999999999999974 677666644
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso |
| >cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-20 Score=145.46 Aligned_cols=106 Identities=42% Similarity=0.704 Sum_probs=97.3
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHH
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFI 106 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i 106 (403)
.|.|.++....++.+.|++|.|.+.... +..|.|+|||+||.+||..|...+|+..+|+||+|..++ ..+.+++
T Consensus 1 ~i~I~~~~~~~~~~~~~~~Y~i~v~~~~----~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~~--~~~~~~~ 74 (106)
T cd06093 1 SVSIPDYEKVKDGGKKYVVYIIEVTTQG----GEEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLFG--NLDPEFI 74 (106)
T ss_pred CEEeCCceEEcCCCCCEEEEEEEEEECC----CCeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCcccc--cCCHHHH
Confidence 3788999988777789999999998742 468999999999999999999999999999999999998 6799999
Q ss_pred HHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 107 EMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 107 ~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
++|+..|+.||+.|+.+|.+..++.+..||+.
T Consensus 75 ~~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~~ 106 (106)
T cd06093 75 EERRKQLEQYLQSLLNHPELRNSEELKEFLEL 106 (106)
T ss_pred HHHHHHHHHHHHHHhcCcccccChHHHHHhCC
Confidence 99999999999999999999999999999863
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting. |
| >cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-18 Score=145.58 Aligned_cols=189 Identities=18% Similarity=0.263 Sum_probs=159.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-------hhhhhHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRE-LGESLSDFGKAAKLLGA-------CEGDALGKAFSELGMKSEAL 257 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~-l~~~~~~l~~~~~~l~~-------~e~~~L~~~~~~~~~~~~~~ 257 (403)
.+...+.++.++..|+..++.|..++....++... .-..+..+|.+|..|+. .++..|+.++..+|++++.+
T Consensus 2 ve~~~d~f~~f~~~md~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~I 81 (199)
T cd07626 2 VEQQVDAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEI 81 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999998888887633 33566666666666663 23568999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHH
Q 043025 258 SVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKA 337 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~ 337 (403)
+.+..+|+......+.|.|++|.+.+.+++++|..|..+++.+..+++... ++|+ ...
T Consensus 82 g~l~~eQa~~D~~~l~E~L~eY~gll~~~pdi~~~~k~al~K~kE~~r~~~-------------egk~---------~~~ 139 (199)
T cd07626 82 GELFAEQPKHDLIPLLDGLHEYKGLLSTFPDIIGVHKGAVQKVKECERLVD-------------EGKM---------SSA 139 (199)
T ss_pred HHHHHHhhHhhHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHH-------------hccc---------cHH
Confidence 999999999999999999999999999999999999998777666543211 1222 123
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 338 ESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 338 ~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+++.++.+++.|+..++.|+.+|+.+|..||+.++.+|.+.||.||++++.-++..+.+
T Consensus 140 e~~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI~fyqqI~~kl~~a~~~ 198 (199)
T cd07626 140 ELEEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQQQIEFYQKIAAKLEEALAM 198 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55568899999999999999999999999999999999999999999999999988764
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for |
| >cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-20 Score=144.31 Aligned_cols=106 Identities=21% Similarity=0.327 Sum_probs=91.0
Q ss_pred EEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHH
Q 043025 28 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIE 107 (403)
Q Consensus 28 v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~ 107 (403)
|+|-+.++.-+. ++|++|.|.++... .+..|.|.|||+||.+||..|...||++.+|+||+|..++. ..+.++++
T Consensus 2 ~~i~~~~~~~~~-~~~~vY~I~V~~~~---~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~~-~~~~~~~e 76 (109)
T cd06883 2 VSVFGFQKRYSP-EKYYIYVVKVTREN---QTEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLGR-SHIKQVAE 76 (109)
T ss_pred cEEEEEEEEecC-CceEEEEEEEEECC---CCCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccCc-cchhHHHH
Confidence 677777776443 47999999998742 13569999999999999999999999999999999999872 24578999
Q ss_pred HHHHHHHHHHHHHhcCc-cccCChhhhccccc
Q 043025 108 MRRQGLDLFVNRIASHP-ELQQSEDLKTFLQA 138 (403)
Q Consensus 108 ~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~ 138 (403)
+|+.+|+.||+.|+++| .+++|+.|..||.+
T Consensus 77 ~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 77 RRKIELNSYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 99999999999999985 99999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d |
| >PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=143.91 Aligned_cols=110 Identities=37% Similarity=0.602 Sum_probs=93.9
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc-cCCCH
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK-FRFSA 103 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~-~~~~~ 103 (403)
.+.|.|.++.+.+++...|+.|.|.... ....|.|+|||+||.+||..|...+|+..+|++|++..++. ...+.
T Consensus 3 ~~~v~v~~~~~~~~~~~~~~~~~i~~~~-----~~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~~~~~~ 77 (113)
T PF00787_consen 3 IIQVSVVDPETSGNKKKTYYIYQIELQD-----GKESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNSRNLDP 77 (113)
T ss_dssp EEEEEEEEEEEESSSSEEEEEEEEEETT-----SSSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSSSTTSH
T ss_pred EEEEEEcCCEEEcCCCEEEEEEEEEECC-----CCEEEEEEEEHHHHHHHHHHHhhhhcccccccCCccccccccccccH
Confidence 4689999999886555555555555532 14689999999999999999999999999999999999871 12799
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+++++|+..|+.||+.|+++|.++.++.+..||+.+
T Consensus 78 ~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL~~~ 113 (113)
T PF00787_consen 78 EFIEERRQALEKYLQSLLSHPELRSSEALKEFLESS 113 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHHcChhhhCchHHHHhcCCC
Confidence 999999999999999999999999999999999863
|
PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A .... |
| >cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.1e-19 Score=136.40 Aligned_cols=108 Identities=25% Similarity=0.335 Sum_probs=93.6
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHH
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEF 105 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~ 105 (403)
..|+|-|.++.-. .++|++|.|.++... ....|.|+|||+||.+||..|.+.||...+||||+|..+|. ..++++
T Consensus 2 ~~v~v~~~~kr~~-~~~~yvY~I~V~~~~---~~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~~~-~~~~~v 76 (111)
T cd06884 2 VRVTVVGFQKRYD-PEKYYVYVVEVTREN---QASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHVGR-SNIKSV 76 (111)
T ss_pred eEEEEEEEEEEec-CCCeEEEEEEEEEcC---CCceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceeecC-CcchHH
Confidence 3688999998765 468999999987531 23679999999999999999999999999999999988872 357899
Q ss_pred HHHHHHHHHHHHHHHhcC-ccccCChhhhccccc
Q 043025 106 IEMRRQGLDLFVNRIASH-PELQQSEDLKTFLQA 138 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~-~~l~~~~~~~~FL~~ 138 (403)
+|+|+..|+.||+.|++. |.++.|+.+..|+.+
T Consensus 77 ~e~R~~~L~~Yl~~Ll~~~~~is~~~~v~~FF~p 110 (111)
T cd06884 77 AEKRKQDIQQFLNSLFKMAEEVSHSDLVYTFFHP 110 (111)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhcChHHHHhcCc
Confidence 999999999999999996 799999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a |
| >cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=140.09 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=90.3
Q ss_pred cEEEEEcCceEeCCC--CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC-------------------
Q 043025 25 YLSVSVTDPVKLGNG--VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK------------------- 83 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~--~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p------------------- 83 (403)
.+.+.|.+.+...++ ...|++|.|.+.. ....|.|.|||+||.+||..|...++
T Consensus 3 ~i~a~I~~~er~~~~~~~~~~~~Y~Iev~~-----g~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~ 77 (140)
T cd06895 3 PIKARITDVERSGTTRHLLNPNLYTIELQH-----GQFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLK 77 (140)
T ss_pred CcEEEEeEEeccCCCCCCCceEEEEEEEEE-----CCEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccc
Confidence 357888888776654 5789999999975 34689999999999999999998632
Q ss_pred ----------CccCCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 84 ----------GIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 84 ----------~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
.+.+|+||.+..++ .+++++++|+.+||.||+.|+.+|.+++++.+..||+.
T Consensus 78 ~~~~~~~~~~~~~lP~lP~~~~~~---~~~~~ie~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeV 139 (140)
T cd06895 78 RSRKPEREKKNRRLPSLPALPDIL---VSEEQLDSRKKQLENYLQNLLKIPDYRNHPETLEFLEV 139 (140)
T ss_pred cccccccccccccCCCCCCccccc---cCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHhhhcc
Confidence 24577888877665 48999999999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr |
| >cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-18 Score=132.59 Aligned_cols=105 Identities=25% Similarity=0.376 Sum_probs=91.9
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC---------ccCCCCCCCcccc
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG---------IFIPPLPEKSAVE 97 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~---------~~iP~lP~k~~~~ 97 (403)
.|+|.|.++.... ++|++|.|.+... ++..|.|+|||+||..||..|...||. +++|+||+|..++
T Consensus 3 ~~~v~~~ekr~~~-~k~y~Y~i~V~~~----dg~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~g 77 (119)
T cd06888 3 DVKVIDVEKRRAP-SKHYVYIINVTWS----DGSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILFR 77 (119)
T ss_pred eEEEEEEEEEecC-CCcEEEEEEEEEc----CCCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCcccC
Confidence 6889999998744 5788999999874 457799999999999999999999997 4799999999998
Q ss_pred ccCC-CHHHHHHHHHHHHHHHHHHhcCc-cccCChhhhccccc
Q 043025 98 KFRF-SAEFIEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQA 138 (403)
Q Consensus 98 ~~~~-~~~~i~~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~ 138 (403)
+. ..+++++|+..|+.||+.|++.| .+..|+.+..|+.+
T Consensus 78 --~s~~~~~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~p 118 (119)
T cd06888 78 --RSHIRDVAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFEA 118 (119)
T ss_pred --cchhHHHHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcCC
Confidence 54 46699999999999999999986 66789999999875
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains |
| >cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-18 Score=131.93 Aligned_cols=105 Identities=19% Similarity=0.248 Sum_probs=92.1
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC---------ccCCCCCCCccc
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG---------IFIPPLPEKSAV 96 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~---------~~iP~lP~k~~~ 96 (403)
..|.|.+.++.... ++|++|.|.+... ++..+.|+|||+||..||..|...||. .++|+||+|.++
T Consensus 2 ~~~~~~~~~kr~~~-~~~y~Y~i~v~~s----~~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~ 76 (118)
T cd06887 2 RHIALLGFEKRFVP-SQHYVYMFLVKWQ----DLSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWF 76 (118)
T ss_pred eeEEEEEEEEeecC-CCcEEEEEEEEEc----CCcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCccc
Confidence 36889999988744 6899999998753 457899999999999999999999997 799999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhc-CccccCChhhhcccccC
Q 043025 97 EKFRFSAEFIEMRRQGLDLFVNRIAS-HPELQQSEDLKTFLQAD 139 (403)
Q Consensus 97 ~~~~~~~~~i~~R~~~L~~fl~~~~~-~~~l~~~~~~~~FL~~~ 139 (403)
+ + .++.++|+.+|+.||+.|+. .|.++.|+.++.||...
T Consensus 77 ~--~--~~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~ 116 (118)
T cd06887 77 D--G--QRAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVR 116 (118)
T ss_pred C--c--chHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcC
Confidence 8 3 39999999999999999965 56899999999999865
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one |
| >PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=134.69 Aligned_cols=193 Identities=17% Similarity=0.281 Sum_probs=160.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHH
Q 043025 184 EESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRH-RELGESLSDFGKAAKLLGAC-------EGDALGKAFSELGMKSE 255 (403)
Q Consensus 184 ~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~-~~l~~~~~~l~~~~~~l~~~-------e~~~L~~~~~~~~~~~~ 255 (403)
.+.+..++.+..+++.|+..++.|...+....++. ..+...+..+|.+|..|+.+ .+..|.+++..+|+++.
T Consensus 37 ~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~qkiG~af~~Ls~afe~d~~~~~~~L~~Al~~tg~~y~ 116 (237)
T PF10456_consen 37 QDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQKIGQAFQSLSQAFELDQQQASMPLTNALKHTGDTYE 116 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS--SSHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHhcCCchhhhHHHHHHHHHHHHHH
Confidence 34578889999999999999999999988888755 44556666666666666653 14689999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHH
Q 043025 256 ALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKEL 335 (403)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~ 335 (403)
.++..++++.......+.+.|+.|.+.+..+.+++.-...++..+..+++-. .++|+.
T Consensus 117 ~Ig~l~~~Qpk~D~~pl~d~L~~Y~GlL~~~pdii~~hk~A~~k~ke~~kl~-------------~e~K~~--------- 174 (237)
T PF10456_consen 117 EIGDLFAEQPKNDLIPLLDCLKEYRGLLSNFPDIISVHKGALQKVKECEKLS-------------DEGKMS--------- 174 (237)
T ss_dssp HHHHHHHTSGGGTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTCHHHHH-------------HTTSS----------
T ss_pred HHHHHHHhccccchHHHHHHHHHHhhhHhhCccHHHHHHHHHHHHHHHHHHH-------------hccCCC---------
Confidence 9999999999999999999999999999999999988877777666553211 123443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 336 KAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 336 ~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
..+++.+..+++.|+..+..|+.+|+.+|..||+.+|+.|...||.||+++++.|++.+..++
T Consensus 175 ~~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~~kLe~a~~~fd 237 (237)
T PF10456_consen 175 QQEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIAEKLEQALQQFD 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 456777889999999999999999999999999999999999999999999999999987653
|
This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A. |
| >cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=126.00 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=87.4
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC--------CccCCCCCCCccccc
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK--------GIFIPPLPEKSAVEK 98 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p--------~~~iP~lP~k~~~~~ 98 (403)
.++|...... +.+++|.|.++.. ++..|.|.|||+||.+||..|...|| ..++|+||++....
T Consensus 2 ~~~V~~~~~~----~~~y~Y~i~v~~s----~~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~~- 72 (112)
T cd06890 2 SASVESVLLE----DNRYWYRVRATLS----DGKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTDV- 72 (112)
T ss_pred eEEEEEEEEE----CCEEEEEEEEEEc----CCcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccCc-
Confidence 4666666555 3578999999874 46889999999999999999999998 45799999877554
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCc-cccCChhhhccccc
Q 043025 99 FRFSAEFIEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQA 138 (403)
Q Consensus 99 ~~~~~~~i~~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~ 138 (403)
.+.+++++|+.+|+.||+.|+.+| .+..|+.++.|+..
T Consensus 73 --~~~~~~e~R~~~L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 73 --VNDSISLKRLNDLNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred --chhHHHHHHHHHHHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 689999999999999999999999 99999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p |
| >cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=122.07 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=87.1
Q ss_pred EEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCC-HHHH
Q 043025 28 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFS-AEFI 106 (403)
Q Consensus 28 v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~-~~~i 106 (403)
|-|+..++.-.. ++|.+|.|.++..- ....|.|.|||+||..||..|.+.||+..+|+||+|..++ +.+ .+.+
T Consensus 2 ~~~~~~~kr~~p-~k~y~Y~I~V~~~~---~~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~g--~s~~~~va 75 (109)
T cd07290 2 VFLCRHESTFNP-SKGYAYVVKVQREG---HKEATFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVIG--RSRGEAVA 75 (109)
T ss_pred eeEeeeeEEecC-CCcEEEEEEEEECC---CceeEEEEeeHHHHHHHHHHHHHHCccccCCCCCCCcccC--ccccHHHH
Confidence 557777777544 46777999998741 1234899999999999999999999999999999999998 543 7999
Q ss_pred HHHHHHHHHHHHHHh-cCccccCChhhhccccc
Q 043025 107 EMRRQGLDLFVNRIA-SHPELQQSEDLKTFLQA 138 (403)
Q Consensus 107 ~~R~~~L~~fl~~~~-~~~~l~~~~~~~~FL~~ 138 (403)
|+|+.+|+.||+.|+ ..|.+..|+.+..|+.+
T Consensus 76 e~R~~~L~~Yl~~Ll~~~~~Is~s~~v~~FF~p 108 (109)
T cd07290 76 ERRKEELNGYIWHLIHAPPEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHHHHHHcCChheecCHHHHHhccc
Confidence 999999999997755 56789999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai |
| >cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-16 Score=121.72 Aligned_cols=104 Identities=20% Similarity=0.256 Sum_probs=87.8
Q ss_pred EEEcCceEeCCCCcceEEEEEEEEecCCCCCCC-ceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC-CHHH
Q 043025 28 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGP-EKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF-SAEF 105 (403)
Q Consensus 28 v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~-~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~-~~~~ 105 (403)
|+|.+.++.... +.|.+|.|.+... ++. ...|.|||++|..||..|.+.||.+.+|+||+|.++| +. ..+.
T Consensus 2 ~~V~~f~Kr~~p-~k~yvY~i~V~~~----~~~~~~~I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~g--rs~~~~v 74 (109)
T cd07289 2 VSVFTYHKRYNP-DKHYIYVVRILRE----GQIEPSFVFRTFDEFQELHNKLSILFPLWKLPGFPNKMVLG--RTHIKDV 74 (109)
T ss_pred cEEeeEEEEEcC-CCeEEEEEEEEEC----CCceeEEEEeeHHHHHHHHHHHHHHCCcccCCCCCCCeeeC--CCcchHH
Confidence 678888877643 5678999999874 222 2559999999999999999999999999999999998 43 3689
Q ss_pred HHHHHHHHHHHHHHHhcCc-cccCChhhhccccc
Q 043025 106 IEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQA 138 (403)
Q Consensus 106 i~~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~ 138 (403)
+++|+.+|+.||+.|++-| .++.|+.+..|+.+
T Consensus 75 ae~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~p 108 (109)
T cd07289 75 AAKRKVELNSYIQSLMNSSTEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHHHHHHHHHHcCChhhhcChHHHHhccc
Confidence 9999999999999999865 78889999999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom |
| >cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.6e-15 Score=124.43 Aligned_cols=193 Identities=17% Similarity=0.240 Sum_probs=158.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-------hhhhhHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRH-RELGESLSDFGKAAKLLGA-------CEGDALGKAFSELGMKSEA 256 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~-~~l~~~~~~l~~~~~~l~~-------~e~~~L~~~~~~~~~~~~~ 256 (403)
+++...+.+..++++|+..++.|..++....++. ..+-..+..+|.+|..|+. .-+..|++++...|.+++.
T Consensus 9 ~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaFe~d~~~~~~~L~~Ai~~tg~~y~~ 88 (210)
T cd07668 9 EIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSTSGYQGETDLNDAITEAGKTYEE 88 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHH
Confidence 4578889999999999999999998887777654 2344455555555555554 2245799999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHH
Q 043025 257 LSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELK 336 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~ 336 (403)
++...++|.......+.+.|+.|.+.+..+.+++.-...++..+.++++-. .++|+. .
T Consensus 89 IG~~faeQpk~Dl~pl~d~L~~Y~G~L~~fPDIi~v~KgA~~KvkE~~k~~-------------~egkm~---------~ 146 (210)
T cd07668 89 IASLVAEQPKKDLHFLMETNHEYKGFLGCFPDIIGAHKGAIEKVKESDKLV-------------ATSKIT---------L 146 (210)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCccccCccHHHHHHHHHHHHHHHHHHh-------------hhccch---------h
Confidence 999999999999999999999999999999999987777776666654321 123333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 337 AESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
.+.+....+++.|+..+..|+.+|+..|..||+..|..|.+.||.||+++....+..+..++.
T Consensus 147 ~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kl~~~l~~y~~ 209 (210)
T cd07668 147 QDKQNMVKRVSTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPV 209 (210)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456677889999999999999999999999999999999999999999999999999988765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi |
| >cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=122.03 Aligned_cols=190 Identities=15% Similarity=0.271 Sum_probs=154.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRH-RELGESLSDFGKAAKLLGAC-------EGDALGKAFSELGMKSEA 256 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~-~~l~~~~~~l~~~~~~l~~~-------e~~~L~~~~~~~~~~~~~ 256 (403)
+++..++.+..++.+|+..++.|..++....++. ..+-..+..+|.+|..|+.. -+..|+.++...|.+++.
T Consensus 9 ~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~LsqaFe~d~~~~s~~L~~Av~~tG~~y~~ 88 (207)
T cd07669 9 DVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHSFQLDPPYSSEALNNAISHTGRTYEA 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHH
Confidence 4578889999999999999999998887777654 23444555556555555542 245799999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHH
Q 043025 257 LSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELK 336 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~ 336 (403)
++...+++.......+.+.|+.|.+.+..+.+++.--..++..+.++++-. .++|+. .
T Consensus 89 IG~~faeQpk~D~~pl~d~L~~Y~GlL~~fPDii~v~K~A~~KvkE~~k~~-------------~e~Km~---------~ 146 (207)
T cd07669 89 VGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMS-------------DEGRMD---------Q 146 (207)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHhCcccCCccHHHHHHHHHHHHHHHHHhh-------------HHhhhh---------h
Confidence 999999999999999999999999999999999887777776665553211 123333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 337 AESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
.+.+....+++.|+..+..|+.+|+..|..||+..|..|.+.||.||+++....+..++.
T Consensus 147 ~~~~~v~~R~~~isya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kle~al~~ 206 (207)
T cd07669 147 DEADGIRKRCRVVGFALQAEMNHFHQRRELDFKQMMQHYLRQQIIFYQRVSQQLEKTLRM 206 (207)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667889999999999999999999999999999999999999999999999988764
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in |
| >cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-14 Score=120.70 Aligned_cols=190 Identities=15% Similarity=0.204 Sum_probs=155.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh-------hhhhHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRH-RELGESLSDFGKAAKLLGAC-------EGDALGKAFSELGMKSEA 256 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~-~~l~~~~~~l~~~~~~l~~~-------e~~~L~~~~~~~~~~~~~ 256 (403)
+++..++.+..+++.|+..++.|..++....++. ..+-..+..+|.+|..|+.. -+..|+.++...|.+++.
T Consensus 9 ~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaF~~d~~~~s~~L~~Av~~tg~~y~~ 88 (207)
T cd07670 9 DVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSAGLNQAIAFTGEAYEA 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHccCCcccchHHHHHHHHHHHHHHH
Confidence 4578889999999999999999998888777764 23444555555555555542 245899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHH
Q 043025 257 LSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELK 336 (403)
Q Consensus 257 ~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~ 336 (403)
++...+++.......+.+.|+.|.+.+..+.+++.-...++..+..+++-. .++|++ .
T Consensus 89 IG~~faeQpk~Dl~Pl~d~L~~Y~G~L~~fPDii~v~KgA~~KvKE~~k~~-------------~egkm~---------~ 146 (207)
T cd07670 89 IGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIHVQKGALTKVKESKKHV-------------EEGKME---------L 146 (207)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHhCccccCCchHHHhHHHHHHHHHHHHHH-------------Hhhccc---------h
Confidence 999999999999999999999999999999999987777776666654321 122333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 337 AESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
.+.+....+++.|+..+..|+.+|++.|..||+.+|..|.+.||.||+++..-.+..+..
T Consensus 147 ~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~~QI~Fyq~v~~kl~~~l~~ 206 (207)
T cd07670 147 QKADGIQDRCNIISFATLAEIHHFHKIRVRDFKSQMQHFLQQQIRFFQKVTQKLEEALQK 206 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355667889999999999999999999999999999999999999999999999887764
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=120.34 Aligned_cols=107 Identities=18% Similarity=0.287 Sum_probs=82.5
Q ss_pred cEEEEEcCceEeCCC----CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCcc-----
Q 043025 25 YLSVSVTDPVKLGNG----VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSA----- 95 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~----~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~----- 95 (403)
.+.+.|.|.+.-..+ ...|++|.|.++. ....|.|.|||+||..||..|.. |...+--|||+|..
T Consensus 3 ~i~~~i~~~eR~~~~~~~~~~~~t~Y~I~v~~-----g~~~w~V~rRy~~F~~Lh~~L~~-~~~~~~~plP~k~~~~~r~ 76 (135)
T cd07296 3 PIKARVLEVERFTSTSDVKKPSLNVYTIELTH-----GEFTWQVKRKFKHFQELHRELLR-YKAFIRIPIPTRSHTVRRQ 76 (135)
T ss_pred ceEEEEEEEEEeeccccccccceEEEEEEEEe-----CCEEEEEEeehHHHHHHHHHHHh-cCCCCCCCCCcccchhhcc
Confidence 467888888876533 5789999999874 23589999999999999999997 54433236778766
Q ss_pred ------------ccccCCCHHHHH----HHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 96 ------------VEKFRFSAEFIE----MRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 96 ------------~~~~~~~~~~i~----~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
+.. ..+....+ +||.+||.||+.|+..|.+++++.+.+||+.
T Consensus 77 ~~~~~~~~~~p~lp~-~~~~~v~e~~~~sRr~~LE~YL~~LL~~~~~Rn~~a~~eFLeV 134 (135)
T cd07296 77 TIKRGEPRHMPSLPR-GAEEEAREEQFSSRRKQLEDYLSKLLKMPMYRNYHATMEFIDV 134 (135)
T ss_pred ccccccccccccCCC-CCCccccccchHHHHHHHHHHHHHHhcChhhcCCHHHHhheec
Confidence 220 11222444 8999999999999999999999999999974
|
The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will |
| >cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3 | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-12 Score=114.83 Aligned_cols=207 Identities=17% Similarity=0.192 Sum_probs=172.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG-DALGKAFSELGMKSEALSVKLQRE 264 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~-~~L~~~~~~~~~~~~~~~~~~~~~ 264 (403)
.|+.|......+..++...+.|.+-+.+....-+.|..+...++..+..+..++. +.+..+......+...+.......
T Consensus 9 ~D~~fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~~~~~~~~~~~~~~~e~y~~~~~~l~~~~~~~ 88 (225)
T cd07590 9 VDRELEREVQKLQQLESTTKKLYKDMKKYIEAVLALSKAEQRLSQDLASGPLCEDNDELRNLVEALDSVTTQLDKTVQEL 88 (225)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999988766553 233334455555555555555566
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 265 ~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
.......+.+|+..|..++..++.++..|..++.+|....+++.+...+ +++... +..+.+++++++.++.
T Consensus 89 ~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K--------~~k~~~-~~KL~kae~el~~Ak~ 159 (225)
T cd07590 89 VNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKLAEK--------EKTGPN-LAKLEQAEKALAAARA 159 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------ccCChh-HHHHHHHHHHHHHHHH
Confidence 6667778899999999999999999999999999999988776654322 122222 4667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
.|+.++..++.||+.|..-|..-|...|.+|+..|+.||.++-.....+.+.+++..
T Consensus 160 ~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~~~ 216 (225)
T cd07590 160 DFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDNPI 216 (225)
T ss_pred HHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999999999999998887653
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-12 Score=109.72 Aligned_cols=201 Identities=11% Similarity=0.117 Sum_probs=168.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|+.|......+..++...+.|.+-+......-+.+.++-..|+.++..+....+... ..+...++.......+..
T Consensus 10 ~D~~Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~lY~p~~~~~----~~~~~v~e~~d~~~~~l~ 85 (211)
T cd07588 10 RDEVFDEHVNNFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSETLKELYEPDWPGR----EHLASIFEQLDLLWNDLE 85 (211)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccH----HHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999988876553221 222334444445555666
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
......+..|+..|..++..++..+..|..++.+|..+.+++++...+- . .-+..+.+++++++.++..
T Consensus 86 ~~l~~~Vl~Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~-------~----kde~KL~kae~el~~Ak~~ 154 (211)
T cd07588 86 EKLSDQVLGPLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLEALKAKK-------K----VDDQKLTKAEEELQQAKKV 154 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhcc-------c----ccHhhHHHHHHHHHHHHHH
Confidence 6677889999999999999999999999999999999987776553321 1 1235566688888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
|+.++..++.|||.|..-|..-+...|.+++..|..||.++..+..++...++.++
T Consensus 155 Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~~l~ 210 (211)
T cd07588 155 YEELNTELHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMDGLA 210 (211)
T ss_pred HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999988877654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th |
| >cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.1e-12 Score=109.26 Aligned_cols=186 Identities=20% Similarity=0.266 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 198 FELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD----ALGKAFSELGMKSEALSVKLQREAHQLLMNFE 273 (403)
Q Consensus 198 ~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~----~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (403)
+.++..++.+.+.+..+++....+......|+.+|..++..... .++.++..+|.+...+......+.......+.
T Consensus 3 ~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~ 82 (194)
T cd07307 3 DELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVI 82 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888888888888888888999999988876633 27889999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 274 EPLKDYV-RAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRL 352 (403)
Q Consensus 274 e~l~~~~-~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~ 352 (403)
+||..|. ..+..+++..+.++.+..+|+.+..++.+...+ +. -...+..++.+++.++..|+..+..
T Consensus 83 ~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~-----~~-------~~~~l~~~~~~~~~ar~~y~~~~~~ 150 (194)
T cd07307 83 EPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKK-----KK-------DSSKLAEAEEELQEAKEKYEELREE 150 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cC-------ChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 999999999999999999999988776544311 11 2245666778888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 353 MNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 353 ~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
+..++..|+..+..++...|..|+..|+.|++++.+.|+.+.+
T Consensus 151 ~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~~ 193 (194)
T cd07307 151 LIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLLP 193 (194)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 9999999999999999999999999999999999999998865
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F- |
| >cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-11 Score=104.94 Aligned_cols=200 Identities=13% Similarity=0.109 Sum_probs=161.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|+.|.........++...+.|.+-+.+....-+.+..+-..|+.++..+....++.. .....++...+. ...+..
T Consensus 10 ~D~~Fe~~errf~~lE~~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~Y~p~~~g~-~~~~~~~~~~d~---~~~dl~ 85 (211)
T cd07611 10 KDEQFEEYVQNFKRQETEGTRLQRELRAYLAAIKGMQEASKKLTESLHEVYEPDWYGR-DDVKTIGEKCDL---LWEDFH 85 (211)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccc-chHHHHHhhHHH---HHHHHH
Confidence 4899999999999999999999999999999999999999999999998876553211 112233333332 233333
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
......+++|+..|..++..++.++..|..++.+|..+.+++++...+- +.+ +..+.+++++++.|+..
T Consensus 86 ~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~----~kD-------e~KL~kAe~el~~Ak~~ 154 (211)
T cd07611 86 QKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQTSK----RKD-------EGRIAKAEEEFQKAQKV 154 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc----ccc-------HHHHHHHHHHHHHHHHH
Confidence 3455568999999999999999999999999999999987766553221 112 34566778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
|+.++..++.|||.+..-|..-|...|..++..|..||.++..+-..+-.-++.+
T Consensus 155 ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~~l 209 (211)
T cd07611 155 FEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMTKL 209 (211)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999988887776654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit |
| >PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-11 Score=103.50 Aligned_cols=202 Identities=14% Similarity=0.184 Sum_probs=171.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAH 266 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~ 266 (403)
|....-+.+.|...|.++..|+..+..++.....|-+-...|+..+...+..|...+..++..++.++..+.+-...+.+
T Consensus 10 d~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa~v~ 89 (219)
T PF06730_consen 10 DSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQAEVE 89 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 55666688889999999999999999998888888888889999999999999888999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCc-chHHHHHHHHHHHHHHHHHHHHH
Q 043025 267 QLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRS-DKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 267 ~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~-~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
++...+.+||..|...|...++-++....+ .++-.++..+|+++++..+ ++ ..|.+++.++..+..+
T Consensus 90 RlE~KVv~pL~~Y~~~cK~~r~elK~~~~a-------r~kEikq~~~Leklr~k~psdr-----~~isqae~el~kas~~ 157 (219)
T PF06730_consen 90 RLEAKVVEPLSQYGTICKHARDELKKFNKA-------RNKEIKQLKQLEKLRQKNPSDR-----QIISQAESELQKASVD 157 (219)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHccCCccc-----hhhhHHHHHHHHHHHH
Confidence 999999999999999998888766554333 3333445667788885433 32 2355667777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
....+..+..-+..|++.|..|++.+|.+|+..++.||-+.+++|......+.++
T Consensus 158 ~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALEv~T~a~q~i~~i 212 (219)
T PF06730_consen 158 ATRTTKQLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAKALEVYTAAYQDIQNI 212 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888899999999999999999999999999999999999999999998888765
|
Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown. |
| >PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-11 Score=107.83 Aligned_cols=196 Identities=18% Similarity=0.286 Sum_probs=167.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLS-------DFGKAAKLLGACE--GDALGKAFSELGMKSEAL 257 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~-------~l~~~~~~l~~~e--~~~L~~~~~~~~~~~~~~ 257 (403)
|+.|......+..++..+..|.+.+...+.....+..... .||.++..++... ...++..+..++.++..+
T Consensus 25 D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i 104 (229)
T PF03114_consen 25 DEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSSLGNALEKFGEAMQEI 104 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHH
Confidence 7889999999999999999999888888888777777777 8999998887654 234778899999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHH
Q 043025 258 SVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKA 337 (403)
Q Consensus 258 ~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~ 337 (403)
..............+.+||..+...+..++..++.|..+..+|+.+...+.+.+.. .++... +.
T Consensus 105 ~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~--------~~~~~~--------~~ 168 (229)
T PF03114_consen 105 EEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLEKLRKK--------KSKSSK--------EE 168 (229)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT--------SSBTHH--------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccccc--------HH
Confidence 88888888888889999999999999999999999999999999987776554321 111111 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 338 ESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 338 ~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
+++.++..|+.++..+..+++.|...+...+...|..|+..+..||+++.+.|+++.+.++
T Consensus 169 ~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 169 KLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQLA 229 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 7888899999999999999999998888888899999999999999999999999999874
|
Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A .... |
| >cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=6e-11 Score=105.04 Aligned_cols=203 Identities=15% Similarity=0.146 Sum_probs=165.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDA-LGKAFSELGMKSEALSVKLQRE 264 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~-L~~~~~~~~~~~~~~~~~~~~~ 264 (403)
.|+.|......+..++...+.|.+.+.......+.+......++..|..+.....+. ..........+++.+.......
T Consensus 9 ~D~~F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~lY~p~~~~~~~~~~~~y~~~v~~l~~~~~~e 88 (224)
T cd07591 9 VDREFEFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAETISSFYGDAGDKDGAMLSQEYKQAVEELDAETVKE 88 (224)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHhHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999887665421 1122334444445544332222
Q ss_pred HH-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHH
Q 043025 265 AH-QLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDST 343 (403)
Q Consensus 265 ~~-~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~ 343 (403)
.. .....+..|+..|..++..++.+++.|..++.+|..+.+++++...+ ..+ -+..|.+++.+++.++
T Consensus 89 l~~~~~~~V~~Pl~~~~~~~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K-----~~k------d~~kL~kae~el~~a~ 157 (224)
T cd07591 89 LDGPYRQTVLDPIGRFNSYFPEINEAIKKRNHKLLDYDAARAKVRKLIDK-----PSE------DPTKLPRAEKELDEAK 157 (224)
T ss_pred HHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHhhHHHHHHHHHHHHhc-----ccC------CHHHHHHHHHHHHHHH
Confidence 22 25667889999999999999999999999999999998877654322 111 1266778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 344 RRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 344 ~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
+.|+.++..++.||+.|..-+..-+...|..|+..|..++.+.......+...+.+
T Consensus 158 ~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~~ 213 (224)
T cd07591 158 EVYETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLDA 213 (224)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999988887765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an |
| >cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2 | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-11 Score=103.27 Aligned_cols=201 Identities=10% Similarity=0.091 Sum_probs=162.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|+.|+......+.++...+.|.+-+.+....-+.+.++-..|+.++..+....++... -+..+....+ ....+..
T Consensus 10 ~D~~Fe~~e~rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~Y~~~~~~~~-~~~~v~e~~d---~~~~~~~ 85 (211)
T cd07612 10 KDEQFEQCAMNLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDIYEPDWDGHE-DLGAIVEGED---LLWNDYE 85 (211)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCccc-HHHHHHhccH---HHHHHHH
Confidence 48999999999999999999999999999999999999999999999988765543211 1222222222 2334444
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
......+++||..|..++..++..+..|..++.+|..+.+++.+.+.+- ..+ +..+.+++.+++.|+..
T Consensus 86 ~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~----~kD-------~~KL~kAe~el~~Ak~~ 154 (211)
T cd07612 86 AKLHDQALRTMESYMAQFPDVKERVAKRGRKLVDYDSARHHLEALQNAK----KKD-------DAKIAKAEEEFNRAQVV 154 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc----ccc-------HHHHHHHHHHHHHHHHH
Confidence 4555668999999999999999999999999999999887766544221 111 45667788888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
|+.++..++.|||.+..-|..-|...|.+++..|..||.++..+...+..-++.+.
T Consensus 155 ye~lN~~L~~ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~l~ 210 (211)
T cd07612 155 FEDINRELREELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKKLE 210 (211)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999998888777653
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 ( |
| >cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=102.34 Aligned_cols=102 Identities=17% Similarity=0.242 Sum_probs=84.6
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC---------ccCCCCCCCcccc
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG---------IFIPPLPEKSAVE 97 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~---------~~iP~lP~k~~~~ 97 (403)
.|..-+.++ .+.|.+|.|.++.. ++..+.|+|||+||..||..|...||. +++|.||.+.+++
T Consensus 7 ~v~~~g~~k----~~~h~~Y~i~V~ws----dgs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~~ 78 (121)
T cd06889 7 DVQGVGVMQ----KRRHKTYMFSVLWS----DGSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSLG 78 (121)
T ss_pred EEEEEeeec----ccceeEEEEEEEEc----CCcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCcccC
Confidence 444444444 35788999999875 678899999999999999999999985 6899999999998
Q ss_pred ccCC--CHHHHHHHHHHHHHHHHHHhcCc-cccCChhhhccccc
Q 043025 98 KFRF--SAEFIEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQA 138 (403)
Q Consensus 98 ~~~~--~~~~i~~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~ 138 (403)
+. ..+.-+.|+..|+.|++.|++-| .+..|+.+..|+.+
T Consensus 79 --~~~~~~~~a~~R~~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 79 --SLKGSTSRSLARLKLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred --CcccccchHHHHHHHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 43 23356799999999999999876 77889999999865
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain |
| >cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-10 Score=98.92 Aligned_cols=198 Identities=15% Similarity=0.154 Sum_probs=158.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hH---------HHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD---AL---------GKAFSELGMKS 254 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~---~L---------~~~~~~~~~~~ 254 (403)
|+.|......+..++..++.|.+.+.........+.....+++.++..+.....+ .. -..+..+..++
T Consensus 1 D~~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 80 (216)
T cd07599 1 DEQFEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYVKAL 80 (216)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHHHHH
Confidence 5678888889999999999999999999999999999999999999988764311 00 12234455555
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHhcccCcchHHHHHHHHH
Q 043025 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKL-KEINLDKLMLTRSDKVGEAEIEYK 333 (403)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~-k~~~l~kl~~~~~~ki~~l~~~i~ 333 (403)
..+..............+..|+..+..++..++..++.|..++.+|....+++++ .. .+..+..+-+..+.
T Consensus 81 ~~l~~~~~~~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~--------~k~~~~~kd~~kl~ 152 (216)
T cd07599 81 EELKKELLEELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQ--------KKKELSLKDEKQLA 152 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--------cCCCCChhHHHHHH
Confidence 6655544455556777889999999999999999999999999999999888766 21 11122233356777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 334 ELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRT 392 (403)
Q Consensus 334 ~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~ 392 (403)
+++.+++.++..|+.++..++.||+.|..-+..-+..++..|...|+.+|..+....+.
T Consensus 153 kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~l~~ 211 (216)
T cd07599 153 KLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHEYLQE 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888999999999999999999999999999999999999999999999988776554
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo |
| >smart00721 BAR BAR domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-09 Score=97.65 Aligned_cols=201 Identities=15% Similarity=0.134 Sum_probs=160.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh-------h-hhhHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLV---KRHRELGESLSDFGKAAKLLGAC-------E-GDALGKAFSELGMKSE 255 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~---k~~~~l~~~~~~l~~~~~~l~~~-------e-~~~L~~~~~~~~~~~~ 255 (403)
|+.|......++.++..+..|.+.+...+ ...+.+......++..+..+... . ...++.++..+|..+.
T Consensus 26 D~~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 105 (239)
T smart00721 26 DEDFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEALK 105 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999888 67677777777777777666332 1 2346677788888888
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHH
Q 043025 256 ALSVKLQREAHQLLMNFEEPLK-DYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKE 334 (403)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~e~l~-~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~ 334 (403)
.+....... ......+..++. .+...+..++..++.|..+..+|..+..++.+.+.. +.++. .+ ++.+
T Consensus 106 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~-----~~~~~----~~-kl~~ 174 (239)
T smart00721 106 KLLQVEESL-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKS-----KEKKK----DE-KLAK 174 (239)
T ss_pred HHHhhHHHH-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh-----ccCCh----hh-hhhh
Confidence 877766556 555556565554 566889999999999999999999998877654322 11111 12 6777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 335 LKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 335 ~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
++.+++.++..|+.++..+..|++.|...+...+...|.+|+..|..||.++...|+.+.+.++
T Consensus 175 ~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 175 AEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888899999999999999999999999988889999999999999999999999999998875
|
|
| >cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-11 Score=94.45 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=82.1
Q ss_pred cEEEEEcCceEeCCCCcce--EEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccc-----c
Q 043025 25 YLSVSVTDPVKLGNGVQAY--ISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAV-----E 97 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~--~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~-----~ 97 (403)
.|.+.|.+.+..+.|...+ .+|+|.++- ..-.|.|.|||.+|..||+.|..--...-+||+|..... .
T Consensus 3 pi~~~V~~~er~~s~s~~~~~~lYtIeltH-----G~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~ 77 (130)
T cd07297 3 PVTAKVENTERYTTGSKVHVCTLYTVRLTH-----GEFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLE 77 (130)
T ss_pred ceEEEEEEEEEeecccccccceeEEEEEec-----CceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccc
Confidence 4688999999887766555 799999974 236799999999999999999863334445565522210 0
Q ss_pred c--------cCCC---HHHHHHHHHHHHHHHHHHhcCccccCChhhhccccc
Q 043025 98 K--------FRFS---AEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138 (403)
Q Consensus 98 ~--------~~~~---~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~ 138 (403)
. .+-+ .+-+..|+++||.||+.|+..|..++.+...+||+.
T Consensus 78 ~~~~~mP~LP~~~~~~~~~~~sr~kqLE~YLn~LL~~~~YRn~~atleFLeV 129 (130)
T cd07297 78 GLTEEMPSLPGTDREASRRTASKPKYLENYLNNLLENSFYRNYHAMMEFLAV 129 (130)
T ss_pred cccCcCCCCCCCCchhhhhhhhHHHHHHHHHHHHhcchhhcCChhheeeeec
Confidence 0 0111 345677999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor |
| >cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.9e-09 Score=90.21 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=146.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVK-LQRE 264 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~-~~~~ 264 (403)
.|+.|......+..++..++.+.+-+......-+.+......++..+..+.....+........+..+...+... ..+.
T Consensus 3 ~D~~fd~~e~rF~~~e~~~~~l~kd~k~Y~~~~~~~~~~~~~~~~~~~d~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (195)
T cd07589 3 KDKEFDELEKKFGSLEKQVQLVVRNVELYLQHVQESVLVKVLALEVVLDLYPSNHPRLESKWERFRRVVRGISSKALPEF 82 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999999999999888888888887777777777777776544332222233444444444333 3445
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 265 ~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
.......+..|+..+..++..++.+++.|..++.+|....+..++ +.+++.+++.+++
T Consensus 83 ~~~i~~~V~~Pl~~~~~~~~~~~k~I~KR~~KllDYdr~~~~~~k----------------------~~k~e~~l~~a~~ 140 (195)
T cd07589 83 KSRVRKLVIEPLSSLLKLFSGPQKLIQKRYDKLLDYERYKEKKER----------------------GGKVDEELEEAAN 140 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccHHHHHHHHHh----------------------hcchHHHHHHHHH
Confidence 667778899999999999999999999999999999988765432 1235677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAW 390 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~W 390 (403)
.|+.++..++.||++|..-+..-+..+|.+|+..|..++..+....
T Consensus 141 ~y~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~~~ 186 (195)
T cd07589 141 QYEALNAQLKEELPKFNQLTAQLLETCLKSFVELQRDLYDTLLKRA 186 (195)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999887653
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease. |
| >KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-09 Score=97.05 Aligned_cols=199 Identities=12% Similarity=0.131 Sum_probs=157.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQRE 264 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~ 264 (403)
..|+.|+.....+..++..-+.|.+-+.+....-+.+...-..|..++..+..+.... ...+.. .++.......+.
T Consensus 27 TkD~~FE~~~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~~g-~~~l~~---v~~~~d~l~~d~ 102 (460)
T KOG3771|consen 27 TKDEQFEQEERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDWPG-RDYLQA---VADNDDLLWKDL 102 (460)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc-HHHHHH---HHHHHHHHHHHH
Confidence 3489999999999999999999999999888888888888888888888777665321 122222 233334445566
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 265 ~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
...+...+..+|..|..++..++..+..|..++++|..+.+.+++.++. +.... ..+.+++.+++.++.
T Consensus 103 ~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~----k~kd~-------~k~~KAeeEl~~Aq~ 171 (460)
T KOG3771|consen 103 DQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAK----KKKDE-------AKLAKAEEELEKAQQ 171 (460)
T ss_pred HHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHh----cCCCh-------hhhHHHHHHHHHHHH
Confidence 6677888999999999999999999999999999999998777654333 22223 334447788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
.|+..+..++.||+.+...|..-|...|+.+...|+.||.++..+..++-..+.
T Consensus 172 ~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~ 225 (460)
T KOG3771|consen 172 VFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLD 225 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999666665554443
|
|
| >cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=86.04 Aligned_cols=85 Identities=15% Similarity=0.265 Sum_probs=71.6
Q ss_pred EEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHhcC-
Q 043025 45 SYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASH- 123 (403)
Q Consensus 45 ~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~fl~~~~~~- 123 (403)
.|.|.+... ++....|.|+|.+|..||.+|+..||...+|.||.+-..+ ..+. -++|.+.|+.||+.|++.
T Consensus 14 lY~i~V~~s----d~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~~--~~~~--~~~R~~~L~~Yl~~Ll~~~ 85 (101)
T cd06896 14 LYLVQVTQS----CNLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHLP--FTDS--DHKRVRDLNHYLEQLLSGS 85 (101)
T ss_pred EEEEEEEEe----CCCcceeeecHHHHHHHHHHHHHHCccccccCCCCccccC--cccH--HHHHHHHHHHHHHHHHccC
Confidence 588888754 3467889999999999999999999999999999997665 2333 367999999999999976
Q ss_pred ccccCChhhhcccc
Q 043025 124 PELQQSEDLKTFLQ 137 (403)
Q Consensus 124 ~~l~~~~~~~~FL~ 137 (403)
|.+++|+.+..|+.
T Consensus 86 ~eVa~sd~v~sFF~ 99 (101)
T cd06896 86 REVANSDCVLSFFL 99 (101)
T ss_pred HHHhcchHHHHHhh
Confidence 58999999988874
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7e-11 Score=105.26 Aligned_cols=100 Identities=26% Similarity=0.364 Sum_probs=75.1
Q ss_pred EcCceEeCC-CCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHH
Q 043025 30 VTDPVKLGN-GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEM 108 (403)
Q Consensus 30 V~~~~~~~~-~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~ 108 (403)
|+.|...++ ..+.|++|.|.++. ...+|.|.|||+||..||+.|..... +.---||||+.+| +..+.|+|+
T Consensus 13 ~~~~~~~~~~~~~~~t~y~i~v~~-----g~~ew~v~~ry~df~~lheklv~e~~-i~k~llppkk~ig--~~~~s~~e~ 84 (490)
T KOG1259|consen 13 VTVPKFSNESSSGGVTYYDIKVRV-----GKVEWLVERRYRDFANLHEKLVGEIS-ISKKLLPPKKLVG--NKQPSFLEQ 84 (490)
T ss_pred ccccccccccccCceEEEEEEEEe-----cceeeeehhhhhHHHHHHHHhhhhhe-eccccCCchhhcC--CCChhHHHH
Confidence 334444442 34689999999986 45789999999999999999986542 3344789999999 899999999
Q ss_pred HHHHHHHHHHHHhcCccccCChhhhcccc
Q 043025 109 RRQGLDLFVNRIASHPELQQSEDLKTFLQ 137 (403)
Q Consensus 109 R~~~L~~fl~~~~~~~~l~~~~~~~~FL~ 137 (403)
|+..|+-||+.++.--.-..-..+-.||.
T Consensus 85 r~~~leiylq~ll~~f~~~~pr~la~fl~ 113 (490)
T KOG1259|consen 85 RREQLEIYLQELLIYFRTELPRALAEFLD 113 (490)
T ss_pred HHHHHHHHHHHHHHHccccCHHHHHHHhc
Confidence 99999999999885322122234445554
|
|
| >KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.8e-10 Score=101.31 Aligned_cols=100 Identities=24% Similarity=0.466 Sum_probs=88.4
Q ss_pred EcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHHH
Q 043025 30 VTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMR 109 (403)
Q Consensus 30 V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~R 109 (403)
|+++..-. +...|++|.|++. +.+.+.+||+.+..||..|..++-+..+|++|+|..|. +++.-++.|
T Consensus 5 v~~t~~~~-~~~~ytaynih~n--------G~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f~---L~~~~~~~r 72 (407)
T KOG3784|consen 5 VPDTSYLT-SLERYTAYNIHIN--------GRQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLFK---LTPQQLDSR 72 (407)
T ss_pred ccchhhcc-Ccccccceeeeec--------ceeEEEEehHHHHhHHHHHHHHhhcccCCCCCcccccC---CChhhhHHH
Confidence 34443333 6679999999985 56789999999999999999999999999999999996 899999999
Q ss_pred HHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 110 RQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 110 ~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
|..||.||+.++++|.++.+..+..||.....
T Consensus 73 r~~leqylqa~~q~~~l~~s~~~~~fL~~~q~ 104 (407)
T KOG3784|consen 73 RRGLEQYLQAVCQDPVLARSELVQKFLMRAQP 104 (407)
T ss_pred HHHHHHHHHHHhcCccccchhhhhHHHHhccc
Confidence 99999999999999999999999999987664
|
|
| >cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.6e-06 Score=75.45 Aligned_cols=202 Identities=12% Similarity=0.133 Sum_probs=126.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHA---------YRLVKRHRELGESLSDFGKAAKLLGAC--EGDALGKAFSELGMKS 254 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~---------~~l~k~~~~l~~~~~~l~~~~~~l~~~--e~~~L~~~~~~~~~~~ 254 (403)
.++.|.++...++.+...+..+.+.. .+.-++.+ ......||.++..-+.. ..+.++.++..+|.+.
T Consensus 13 l~d~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~r--k~p~~~Lg~~M~~~g~~l~~~s~lg~~L~~~g~a~ 90 (244)
T cd07595 13 LSDELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLK--KLPEYGLAQSMLESSKELPDDSLLGKVLKLCGEAQ 90 (244)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhc--cCcHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 35667666666655555555444421 11112111 11233344444333321 2457899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHH
Q 043025 255 EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN---AFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIE 331 (403)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~---~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~ 331 (403)
..++.....+-......|++||..++. ..++++.+.|.+ .-.+|..+..++.+.+..-. ......|+..++.+
T Consensus 91 ~~ia~~~~~~d~~i~~~fl~pL~~~le--~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~--~~~~~~K~~~l~eE 166 (244)
T cd07595 91 NTLARELVDHEMNVEEDVLSPLQNILE--VEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKSSG--GQGAAAKVDALKDE 166 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccc--ccccccccchHHHH
Confidence 999999888888888999999998885 123334444433 34466666555443211000 01124566666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 332 YKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 332 i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
+++++ .+|+.-+..+...+..|-. ++.++-..|.+|+..|+.||++++++.+.+++.++...
T Consensus 167 ~e~ae-------~k~e~~~e~~~~~M~~~l~-~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~ 228 (244)
T cd07595 167 YEEAE-------LKLEQCRDALATDMYEFLA-KEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQI 228 (244)
T ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555 4455555555666666653 47899999999999999999999999999999998654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and |
| >cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins | Back alignment and domain information |
|---|
Probab=98.83 E-value=9e-06 Score=71.20 Aligned_cols=191 Identities=13% Similarity=0.125 Sum_probs=126.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKR---HRE------LGESLSDFGKAAKLLGAC--EGDALGKAFSELGMKSE 255 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~---~~~------l~~~~~~l~~~~~~l~~~--e~~~L~~~~~~~~~~~~ 255 (403)
+..|.++...++.....+..+.+.....+.. .+. -......||.++..-+.. +.+.++.++..+|.+..
T Consensus 6 ~ddf~~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G~aL~~~G~a~~ 85 (215)
T cd07593 6 SEEFLELEKEIELRKEGMERLHRSTEAYVEYLSKKKPLLDDKDKCLPVEALGLVMINHGEEFPQDSEYGSCLSKLGRAHC 85 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCChHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHH
Confidence 4566666666666555555555544444431 110 011244455544444432 24578999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHH
Q 043025 256 ALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA---FRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEY 332 (403)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~---~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i 332 (403)
+++.+..........+|..||..+.. -++++-+.|.++ -.+|..+..++.+. + +++
T Consensus 86 kia~~q~~f~~~~~~~~l~pL~~~l~---~~k~i~k~RKkLe~rRLdyD~~ksk~~ka-------k--~~~--------- 144 (215)
T cd07593 86 KIGTLQEEFADRLSDTFLANIERSLA---EMKEYHSARKKLESRRLAYDAALTKSQKA-------K--KED--------- 144 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c--ccc---------
Confidence 99998887778888889998888774 345555555433 23555544433322 1 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 333 KELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 333 ~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
..++.+++.++.+|+.-++.+...+..|.. ...+.-..|.+|++.|+.||+++.++.+.+....-+
T Consensus 145 ~~~eeElr~Ae~kfees~E~a~~~M~~i~~-~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~~~~ 210 (215)
T cd07593 145 SRLEEELRRAKAKYEESSEDVEARMVAIKE-SEADQYRDLTDLLDAELDYHQQSLDVLREVRQSWPS 210 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 235667777788888888888888888864 357888999999999999999999999999876544
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol |
| >cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-05 Score=68.09 Aligned_cols=193 Identities=12% Similarity=0.095 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 197 IFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGA-----CE-GDALGKAFSELGMKSEALSVKLQREAHQLLM 270 (403)
Q Consensus 197 i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~-----~e-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (403)
+..++..++.|.+....++...+.++.+...|+..+..++. +. .+.+..++..++.++..+.............
T Consensus 11 ~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~ 90 (215)
T cd07601 11 ALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLSSQLAD 90 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555531 11 2234468899999999999988888888888
Q ss_pred hhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccC-cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 271 NFEEPLKDYV-RAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTR-SDKVGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 271 ~~~e~l~~~~-~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~-~~ki~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
.+..||..++ ..+..+|+.=+.=+++..+|+.+..+. .++...+ ..++ ..++..++...+..|..
T Consensus 91 ~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~-------~~l~k~k~~~~~------~~Ea~~~l~~~R~~F~~ 157 (215)
T cd07601 91 TVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKY-------SRLSKKRENTKV------KIEVNDEVYACRKKQHQ 157 (215)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHH-------hhCCcCCCchHH------HHHHHHHHHHHHHHHHH
Confidence 8999999887 567777764333333444555543322 2222222 1111 23667778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccC
Q 043025 349 IVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWR-TLLPKLEACSS 402 (403)
Q Consensus 349 i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We-~~~~~~~~~~~ 402 (403)
..-....-|...+..|..+|...|..|...++.|+++-.++.. ++-|-+..++.
T Consensus 158 ~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~~~v~~ 212 (215)
T cd07601 158 TAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFLSDINT 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888888999999999999999999999999999999999986 88887777654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3 | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.5e-05 Score=66.87 Aligned_cols=192 Identities=12% Similarity=0.087 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 191 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE--GDALGKAFSELGMKSEALSVKLQREAHQL 268 (403)
Q Consensus 191 ~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e--~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (403)
.+...-+..|+..|..+.+....+++.-+.+.++...|+..+..+...- .+.+++++..+++++..+........+..
T Consensus 5 ~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~ 84 (200)
T cd07637 5 DEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMILFDQA 84 (200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666666667777777777666665422 34577888999999999988888888888
Q ss_pred HHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 269 LMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 269 ~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
...+.+||..++. .+..+|+.=+.=++...+|+.+..+ ...++..++ .++.++..++..++..|.
T Consensus 85 e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k-------~~~~k~kk~-------~~l~Ea~~~L~~~Rk~f~ 150 (200)
T cd07637 85 QRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVK-------NAQAPRHKP-------HEVEEATSTLTITRKCFR 150 (200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HhhcCCCCh-------HHHHHHHHHHHHHHHHHH
Confidence 8888999988875 5677776433223333344444332 112221222 345666777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 348 TIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 348 ~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
..+-.....+...+..|..+|...|..|...++.|+++-.++..++.|.
T Consensus 151 ~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~py 199 (200)
T cd07637 151 HLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDPY 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 9988889999999999999999999999999999999999999888664
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-05 Score=66.88 Aligned_cols=191 Identities=13% Similarity=0.063 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 192 KLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGAC--EGDALGKAFSELGMKSEALSVKLQREAHQLL 269 (403)
Q Consensus 192 ~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~--e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (403)
.....++.++..++.+.+....++..-..+..+-..|+.++..++.. +.+.++.++..++..+..+........+...
T Consensus 6 ~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~ 85 (200)
T cd07603 6 QVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQ 85 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555532 2335778899999999999888888888888
Q ss_pred HhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 270 MNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 270 ~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
..+.+||..++. .+..+|++=+.=+++..+|+.+..+ ...+.. .| ..++.++...+..++..|..
T Consensus 86 ~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al~k-------~~~~~K---~K----~~~~~Ea~~~L~~~Rk~f~~ 151 (200)
T cd07603 86 RTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNALVK-------NAQAPR---SK----PQEAEEATNILTATRSCFRH 151 (200)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HhccCC---CC----HHHHHHHHHHHHHHHHHHHH
Confidence 889999988865 5677776433333344445444332 111211 12 24566677778888888988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 349 IVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 349 i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
.+-.....+...+..|..+|...|..|...+..|+++-.+.|+++.|.
T Consensus 152 ~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~dl~py 199 (200)
T cd07603 152 TALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLEDLEPY 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCc
Confidence 888888899999999999999999999999999999999999998764
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.2e-05 Score=67.14 Aligned_cols=199 Identities=17% Similarity=0.152 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 193 LKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE----GDALGKAFSELGMKSEALSVKLQREAHQL 268 (403)
Q Consensus 193 ~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (403)
+.+.++.++..+.++.+....++..-..+..+...|+.++..++.+- ...++.++..++.....+...........
T Consensus 7 lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~~~L~~~~ 86 (215)
T cd07604 7 LEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALFKNLMQNL 86 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555666666666665666666666666666666432 12478889999999999999888888888
Q ss_pred HHhhhHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHH---HHHHHHHHHHHHHHHHH
Q 043025 269 LMNFEEPLKDYVRA-VQSIK-ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVG---EAEIEYKELKAESEDST 343 (403)
Q Consensus 269 ~~~~~e~l~~~~~~-~~s~k-~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~---~l~~~i~~~~~~~~~~~ 343 (403)
...+..||..++.. +..++ ++=+.=+++..+|+.+..++ ++.+... .+-. ..+....++...++..+
T Consensus 87 ~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~-------~k~Kk~~-~~~~~~~r~e~~~~e~~~~l~~~R 158 (215)
T cd07604 87 NNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKI-------EKEKKQL-AKEAGMIRTEITGAEIAEEMEKER 158 (215)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhccchh-hhhhhhcchhhhhhhHHHHHHHHH
Confidence 88899999988876 66666 54444444555565553332 3322100 0000 01111245667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 344 RRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 344 ~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
..|....-...--+...+..+..+|...|..|...|+.|+++-.+..+.+.|.++.
T Consensus 159 ~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~~~ 214 (215)
T cd07604 159 RMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYIEK 214 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 88888887777888889999999999999999999999999999999999998864
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate |
| >cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2 | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.2e-05 Score=65.02 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 191 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGAC--EGDALGKAFSELGMKSEALSVKLQREAHQL 268 (403)
Q Consensus 191 ~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~--e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (403)
..+...+..|+..+..+.+....+++...+++.+...|+..+..++.. ..+.++..+..+++++..+........+..
T Consensus 5 ~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~L~~q~ 84 (200)
T cd07638 5 EDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTILFDQA 84 (200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777777888888888888888888888877532 223567889999999999988877777777
Q ss_pred HHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 269 LMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 269 ~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
...+..||..++. .+..+|+.=+ + ++.+.+ +.-..+.|--.....| ..+++++...+..++..|.
T Consensus 85 ~~~l~~~L~~F~k~dl~~vke~kk-~------FdK~s~---~~~~aL~K~~~~~k~k----~~e~eEa~~~l~~~r~~F~ 150 (200)
T cd07638 85 QRSIKAQLQTFVKEDLRKFKDAKK-Q------FDKVSE---EKENALVKNAQVQRNK----QHEVEEATNILTATRKCFR 150 (200)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHH-H------HHHHhH---HHHHHHHHhccCCcCc----hHHHHHHHHHHHHHHHHHH
Confidence 7888888888765 3555555321 1 111111 1122223321111112 2566778888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 348 TIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 348 ~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
...-....-|...+..|..+|...|..|+..++.|+++-.++..++-|.
T Consensus 151 ~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el~~d~~py 199 (200)
T cd07638 151 HIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDLFSELGPY 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999998887664
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1 | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.1e-05 Score=66.02 Aligned_cols=191 Identities=13% Similarity=0.079 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 192 KLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGA-C-EGDALGKAFSELGMKSEALSVKLQREAHQLL 269 (403)
Q Consensus 192 ~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~-~-e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (403)
+...-+..++..++.|.+....++..-+++..+-..|+..+..++. + ..+.++.++..++..+..+........+...
T Consensus 6 ~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~ 85 (200)
T cd07639 6 EVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEATQ 85 (200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666666666666666666666664 2 2345778899999999888777777666666
Q ss_pred HhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 270 MNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 270 ~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
..+..||..++. .+..+|+.=+.=++....|+.+..+. .++. ..|. .+++++...+...+..|..
T Consensus 86 ~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~-------~~~~---k~k~----~e~~Ea~~~l~~~R~~F~~ 151 (200)
T cd07639 86 FSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHN-------AETP---RRKA----QEVEEAAAALLGARATFRD 151 (200)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHH-------hhcc---ccch----HHHHHHHHHHHHHHHHHHH
Confidence 777888887765 46667764333333444555543221 1111 1121 3667788888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 349 IVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 349 i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
..-.....|...+..|..+|...|..|...+..|+++-.++..++-|.
T Consensus 152 ~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~~y 199 (200)
T cd07639 152 RALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALHQY 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 998989999999999999999999999999999999999998887653
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC) | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.9e-05 Score=64.74 Aligned_cols=189 Identities=12% Similarity=0.083 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 043025 193 LKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALG-----KAFSELGMKSEALSVKLQREAHQ 267 (403)
Q Consensus 193 ~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~-----~~~~~~~~~~~~~~~~~~~~~~~ 267 (403)
+..-+..++..+..|.+....++...+.++.+-..|+..+..++....+++. .++..++.++..+........+.
T Consensus 6 ~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q 85 (202)
T cd07606 6 LEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQ 85 (202)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666666666666666677777766654433333 46889999999998888888888
Q ss_pred HHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-ccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 268 LLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM-LTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 268 ~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
....+..||..++. .+..+|+.=+.=+++..+|+.+..+. -.+. ..+++. +.+++.++..++..
T Consensus 86 ~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~-------~~l~k~~k~~~-------~~ea~~~l~~~R~~ 151 (202)
T cd07606 86 VEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKF-------LSLTKDAKPEI-------LAAAEEDLGTTRSA 151 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccccCchHH-------HHHHHHHHHHHHHH
Confidence 88888999988875 46666764333334445555554322 2222 122322 34667777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
|....-....-|...+..|..+|...|..|...++.|+++-.++..++.|
T Consensus 152 F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~p 201 (202)
T cd07606 152 FETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLEP 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888888888999999999999999999999999999999998877654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-05 Score=69.08 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 043025 227 DFGKAAKLLGAC--EGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN---AFRQQC 301 (403)
Q Consensus 227 ~l~~~~~~l~~~--e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~---~~~~~~ 301 (403)
.||.++...+.. +.+.++.++..+|.+..+++.....+.......|++||..+.. ..++++-+.|.+ .-.+|.
T Consensus 73 ~Lg~~M~~~g~~lg~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~--~dik~i~k~RKkLe~rRLd~D 150 (229)
T cd07594 73 QLGQAMIEAGNDFGPGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLE--GDMKTISKERKLLENKRLDLD 150 (229)
T ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 455555444432 2357899999999999999999888888888999999998876 123333333432 233555
Q ss_pred HHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 302 ELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQAR 381 (403)
Q Consensus 302 ~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~ 381 (403)
.+..++. + ...+++...+ +.+++.++.+|+.-++....=+..+.. ...+....|.+|+..|+.
T Consensus 151 ~~k~r~~-------k--Ak~~~~~~~~-------e~elr~Ae~kF~~~~E~a~~~M~~i~~-~~~~~~~~L~~lv~AQl~ 213 (229)
T cd07594 151 ACKTRVK-------K--AKSAEAIEQA-------EQDLRVAQSEFDRQAEITKLLLEGISS-THANHLRCLRDFVEAQMT 213 (229)
T ss_pred HHHHHHh-------h--cCCccchhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHH
Confidence 5544332 2 1234443333 445555556666655555544444442 235677889999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 043025 382 LASSIADAWRTLLPKL 397 (403)
Q Consensus 382 ~~~~~~~~We~~~~~~ 397 (403)
||+++.+..+++.+.+
T Consensus 214 Yh~q~~e~L~~l~~~l 229 (229)
T cd07594 214 YYAQCYQYMDDLQRQL 229 (229)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999987653
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. |
| >cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1 | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-05 Score=68.85 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=108.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHh
Q 043025 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA---FRQQCELAETMKLKEINLDKL 317 (403)
Q Consensus 241 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~---~~~~~~~~~~l~~k~~~l~kl 317 (403)
+.++.++..+|.+...++.....+-......|++||..+... .++++.+.|.+. ..+|..+...+.+.....
T Consensus 77 s~~g~aL~~~gea~~kla~~~~~~d~~ie~~fl~PL~~~le~--dlk~I~K~RkkLe~~RLD~D~~K~r~~~a~~~~--- 151 (246)
T cd07618 77 SLIGKMLDTCGDAENKLAFELSQHEVLLEKDILDPLNQLAEV--EIPNIQKQRKQLAKLVLDWDSARGRYNQAHKSS--- 151 (246)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHhHHhhHHHHHHHHHhccccC---
Confidence 468889999999999999876666666777999999988773 344555555442 346666555443321110
Q ss_pred ccc----CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 318 MLT----RSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 318 ~~~----~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~ 393 (403)
+. ...|+..++++++++..+++.+++.+.. ++-.|- .+..++-..|.+|++.|++||++.+++.+.+
T Consensus 152 -~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~-------dm~~~l-~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~ 222 (246)
T cd07618 152 -GTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQLAA-------DMYNFA-SKEGEYAKFFVLLLEAQADYHRKALAVIEKV 222 (246)
T ss_pred -ccccccccchhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1467777888888888888877777655 555554 6789999999999999999999999999999
Q ss_pred HHHhhhccC
Q 043025 394 LPKLEACSS 402 (403)
Q Consensus 394 ~~~~~~~~~ 402 (403)
+|.+++.+.
T Consensus 223 ~p~i~~~~~ 231 (246)
T cd07618 223 LPEIQAHQD 231 (246)
T ss_pred HHHHHHHHH
Confidence 999998763
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation. |
| >cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2 | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.5e-05 Score=68.50 Aligned_cols=201 Identities=14% Similarity=0.138 Sum_probs=123.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HH-----HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVK---------RH-----RELGESLSDFGKAAKLLGACEGDALGKAFSELGM 252 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k---------~~-----~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~ 252 (403)
|+.|.++...++.....+.++.+.....+. +. -.|+..|.+.|..| .+.+.++.++..+|.
T Consensus 14 d~~~~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~el-----g~~s~lg~aL~~~ge 88 (248)
T cd07619 14 SEDLLQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVL-----GDDSLLGKMLKLCGE 88 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhc-----CCCchHHHHHHHHHH
Confidence 667777777666655555555444333321 11 23555555555444 224579999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHhcc--cCcchHHH
Q 043025 253 KSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN---AFRQQCELAETMKLKEINLDKLML--TRSDKVGE 327 (403)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~---~~~~~~~~~~~l~~k~~~l~kl~~--~~~~ki~~ 327 (403)
+...++.....+-.....+|+.||..+.. ..++.+.+.|.+ +-.+|..+...+...........+ ....+.+.
T Consensus 89 a~~kla~a~~~~d~~i~~~fl~PL~~~le--~dlk~I~k~RK~Le~~RLD~D~~K~r~~~a~~~~~~~~~~~~~~~k~e~ 166 (248)
T cd07619 89 TEDKLAQELILFELQIERDVVEPLYVLAE--VEIPNIQKQRKHLAKLVLDMDSSRTRWQQSSKSSGLSSNLQPTGAKADA 166 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHhhHhhHHHHHHHHHhccccccccccccCCCCccHH
Confidence 99999998888888888999999998876 233444444443 234555554443221000000000 01234556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043025 328 AEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACSS 402 (403)
Q Consensus 328 l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~~ 402 (403)
++.++++++.+++.+++. .-.++-.|-. ++.+.-.-|.+|++.|+.||++.+++.+.+++.+++.+.
T Consensus 167 lr~e~E~ae~~~e~~kd~-------~~~~m~~~l~-~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~ 233 (248)
T cd07619 167 LREEMEEAANRMEICRDQ-------LSADMYSFVA-KEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQE 233 (248)
T ss_pred HHHHHHHHHHHHHHHHhh-------hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555544333 3344444543 355566669999999999999999999999999998754
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.0002 Score=62.17 Aligned_cols=187 Identities=14% Similarity=0.171 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLG-----ACEG---DALGKAFSELGMKSEALSVKLQREAHQ 267 (403)
Q Consensus 196 ~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~-----~~e~---~~L~~~~~~~~~~~~~~~~~~~~~~~~ 267 (403)
-++.++..++.|.+....++...++++.+...|+..+..++ ..+. ..++..+..+++.+..+........+.
T Consensus 10 ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q 89 (207)
T cd07602 10 ELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRMLEN 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555566666666666665555 2211 146788999999999998888888888
Q ss_pred HHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc-cCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 268 LLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLML-TRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 268 ~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~-~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
....+..||..+.. .+..+|+.=+.=++.-..|+.+..+ --.+.. .++ .++++++..+..++..
T Consensus 90 ~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~k-------~~~lsk~kk~-------~~~~ea~~~l~~~r~~ 155 (207)
T cd07602 90 AEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLEK-------HLNLSTKKKE-------NQLQEADAQLDMERRN 155 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhccCCCCCc-------hHHHHHHHHHHHHHHH
Confidence 88888888888876 4666666433222333344444322 111211 112 3455566777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
|....-....-|...+..|..+|...|..|...++.|+++-.++..++.|.
T Consensus 156 f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~py 206 (207)
T cd07602 156 FHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKPY 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 988888888899999999999999999999999999999999998887663
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1 |
| >cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2 | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.3e-05 Score=68.80 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHH---HHH
Q 043025 226 SDFGKAAKLLGAC--EGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV-RAVQSIKATIAERANA---FRQ 299 (403)
Q Consensus 226 ~~l~~~~~~l~~~--e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~-~~~~s~k~~l~~R~~~---~~~ 299 (403)
..||.++...+.. +.+.++.++..+|.+..+++.....+.......|++||..+. ..+ +++.+.|.+. -.+
T Consensus 67 ~~Lg~~M~~~G~~lg~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~di---k~i~k~RKkLe~rRLd 143 (223)
T cd07614 67 GLLGETMIRYGKELGDESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKDL---KEIQHHLKKLEGRRLD 143 (223)
T ss_pred hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3344444443321 235789999999999999999988888888899999999886 333 3333333322 234
Q ss_pred HHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 300 QCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQ 379 (403)
Q Consensus 300 ~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~q 379 (403)
|..+.. ++ +|.. +.++..+..+|+.-++.+...+..|.. ...+.-+.|.+|++.|
T Consensus 144 yD~~K~-------r~--------~k~~---------eeelr~a~ekFees~E~a~~~M~~il~-~e~e~~~~L~~lveAQ 198 (223)
T cd07614 144 FDYKKK-------RQ--------GKIP---------DEELRQAMEKFEESKEVAETSMHNLLE-TDIEQVSQLSALVDAQ 198 (223)
T ss_pred HHHHHH-------cC--------CCCc---------hHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHH
Confidence 443221 11 1111 245556666788888777777777764 4678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 043025 380 ARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 380 i~~~~~~~~~We~~~~~~~~ 399 (403)
+.||++++++.+++...+..
T Consensus 199 l~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07614 199 LDYHRQAVQILDELAEKLKR 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988763
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated |
| >cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00026 Score=60.79 Aligned_cols=194 Identities=12% Similarity=0.109 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 190 YEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLL 269 (403)
Q Consensus 190 f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (403)
++.--+.++.....+..+.+.++++..+...++.+...||..|..+|.-++ .+...+..++.+...++..-.
T Consensus 4 LeaklE~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p-~l~~af~~~aet~k~l~kng~------- 75 (201)
T cd07660 4 LEAQIEVLRDTQRKYESVLRLARALASQFYQMLQTQKALGDAFADLSQKSP-ELQEEFTYNAETQKLLCKNGE------- 75 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHhHH-------
Confidence 344445566667778888899999999999999999999999999998664 457777777776666554322
Q ss_pred HhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCc--chHHHHHHHHHHHHHHHHHHHHHH
Q 043025 270 MNFEEPLKDYVRAVQSIKA-TIAERANAFRQQCELAETMKLKEINLDKLMLTRS--DKVGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 270 ~~~~e~l~~~~~~~~s~k~-~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~--~ki~~l~~~i~~~~~~~~~~~~~~ 346 (403)
.+..+|..++..+.-+.+ ++.+-..-+..|+.+.-+.......++.+...+. +.+. .+..+....+.++.+|
T Consensus 76 -~Ll~al~~f~s~l~T~~~kai~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~~~~~l~----r~~~~q~~~~~~k~kf 150 (201)
T cd07660 76 -TLLGALNFFVSSLNTLVNKTMEDTLMTVKQYESARIEYDAYRNDLEALNLGPRDAATSA----RLEEAQRRFQAHKDKY 150 (201)
T ss_pred -HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhHhHHHHhccHHHcccCCCccchHh----hHHHHHHHHHHHHHHH
Confidence 344455555444333221 1222222233444444444433445555442221 1222 2344666677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 347 ETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 347 ~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+.....+..=++-++..|..+|..-|.-|......|+..+....+.++.+
T Consensus 151 ~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L~~~~~~ 200 (201)
T cd07660 151 EKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQLEQTLKQ 200 (201)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999988764
|
The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im |
| >cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00011 Score=64.96 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 043025 227 DFGKAAKLLGAC--EGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA---FRQQC 301 (403)
Q Consensus 227 ~l~~~~~~l~~~--e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~---~~~~~ 301 (403)
.||.++...|.. +.+.++.++..+|.+...++.....+.......|++||..+.. ..++++.+.|.+. -.+|.
T Consensus 68 ~Lg~~M~~~g~elg~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~--~dik~i~k~RKkLe~rRLdyD 145 (223)
T cd07592 68 LLGEVMLKYGRELGEDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQD--KDLKEINHHRKKLEGRRLDYD 145 (223)
T ss_pred HHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444331 2357899999999999999999888888888999999987642 2233333334332 22343
Q ss_pred HHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 302 ELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQAR 381 (403)
Q Consensus 302 ~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~ 381 (403)
.+.. ++ .|. .+.+++.++.+|+.-++.+...+..|.. ...+.-+.|..|++.|+.
T Consensus 146 ~~k~-------k~--------~k~---------~eeEl~~Ae~kfe~s~E~a~~~M~~il~-~e~e~~~~L~~lveAQl~ 200 (223)
T cd07592 146 YKKR-------KQ--------GKG---------PDEELKQAEEKFEESKELAENSMFNLLE-NDVEQVSQLSALVEAQLD 200 (223)
T ss_pred HHHH-------hc--------ccC---------chHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 2221 11 111 2466777888888888888888888875 468888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 043025 382 LASSIADAWRTLLPKLEA 399 (403)
Q Consensus 382 ~~~~~~~~We~~~~~~~~ 399 (403)
||+++.+..+++.+.+..
T Consensus 201 Yh~~~~e~L~~l~~~L~~ 218 (223)
T cd07592 201 YHRQSAEILEELQSKLQE 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998863
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra |
| >cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3 | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.4e-05 Score=66.92 Aligned_cols=148 Identities=15% Similarity=0.193 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---
Q 043025 220 ELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA--- 296 (403)
Q Consensus 220 ~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~--- 296 (403)
-||..|.+.|..|. +.+.++.++..+|.+..+++.....+.......|.+||..+.. ..++++.+.|.+.
T Consensus 68 ~Lg~~M~~~G~~lg-----~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~--~dik~i~k~RKkLe~r 140 (223)
T cd07615 68 LLGDCMLRYGRELG-----EESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQD--KDLKEIGHHLKKLEGR 140 (223)
T ss_pred HHHHHHHHHHhhCC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 34444444443332 2457899999999999999999888888888999999987642 1233333333322
Q ss_pred HHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 297 FRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFS 376 (403)
Q Consensus 297 ~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a 376 (403)
-.+|..+. .++ ++. .+.+++.++.+|+..++.+...+..|-. ...+.-+.|..|+
T Consensus 141 RLd~D~~K-------~r~--------~k~---------~~eE~~~A~~kfees~E~a~~~M~n~le-~e~e~~~~L~~lv 195 (223)
T cd07615 141 RLDFDYKK-------KRQ--------GKI---------PDEEIRQAVEKFEESKELAERSMFNFLE-NDVEQVSQLSVLI 195 (223)
T ss_pred HHHHHHHH-------HcC--------CCC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHH
Confidence 22333321 111 111 1556777778888888888888888864 4678889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 043025 377 KGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 377 ~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
+.|+.||++++++.+.+.+.+..
T Consensus 196 ~AQl~Yh~~a~eiL~~l~~~l~~ 218 (223)
T cd07615 196 EAALDYHRQSTEILEDLQSKLQN 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998863
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e |
| >cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00012 Score=63.16 Aligned_cols=194 Identities=13% Similarity=0.113 Sum_probs=133.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAH 266 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~-~L~~~~~~~~~~~~~~~~~~~~~~~ 266 (403)
.+.+....+|+++....+.+......+....+..+.++.+|+..+..-+..+.+ .++.++..++..+..+........+
T Consensus 9 ~~l~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~ 88 (207)
T cd07634 9 IELERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQ 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666433322211221 4778888899888888887777777
Q ss_pred HHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-ccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 267 QLLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM-LTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 267 ~~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
.....+..||..++. .+..+|+.=+.=++....|+.+..+- -.+. ..++ .++.++...+...+.
T Consensus 89 ~~~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~aleK~-------l~l~~~kk~-------~~~~ea~~~l~~~R~ 154 (207)
T cd07634 89 NANDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYSILEKH-------LNLSAKKKE-------SHLQRADTQIDREHQ 154 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHHHHHHH-------HhccccCCc-------cHHHHHHHHHHHHHH
Confidence 777778888888765 46677764443344455554443221 1111 1123 345666777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
.|....-....-|...+..|..+|...|..|...+..|+++-.++.+++.|
T Consensus 155 ~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~p 205 (207)
T cd07634 155 NFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAP 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 888888888889999999999999999999999999999999999888765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain |
| >cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2 | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00049 Score=59.43 Aligned_cols=196 Identities=15% Similarity=0.214 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGK-AAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFE 273 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~-~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (403)
.-+.++...++.+.......+.....++.++.+||. ++ +. +.+.+++++..+|.....+........+.....+.
T Consensus 16 ~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l---~~-dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~ 91 (215)
T cd07642 16 TVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSNCV---CR-DDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIIT 91 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---CC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556666666666666666666665 33 11 23467889999999999998888888888888888
Q ss_pred HHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 274 EPLKDYVR-AVQSIK-ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVR 351 (403)
Q Consensus 274 e~l~~~~~-~~~s~k-~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~ 351 (403)
-|+..++. .+.-+| ++=+.-++++.+|+.+..+.++- +-+..++.-+...+..=.++.+.++.++..|....-
T Consensus 92 ~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~-----~r~~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~ 166 (215)
T cd07642 92 FPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKE-----KKEHAKMHGMIRTEISGAEIAEEMEKERRFFQLQMC 166 (215)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-----hhccCCccccchhccchhhHHHHHHHHHHHHHHHHH
Confidence 88888887 787887 55444566777777765432221 111122222211111113344455566666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 352 LMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 352 ~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
.-.--+.-.+..+..++-..+..|...|..|+++-.+..+.+-|.++.
T Consensus 167 dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~~ 214 (215)
T cd07642 167 EYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIEK 214 (215)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 544466668888999999999999999999999999999999999875
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i |
| >cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.0005 Score=59.25 Aligned_cols=197 Identities=13% Similarity=0.124 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 190 YEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLL 269 (403)
Q Consensus 190 f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (403)
++.--+.++........|.+.++++..+...++.....||..|..+|.-+++.-+..+..+|++...++.. .
T Consensus 4 L~akle~l~~~~~~y~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~~~a~~~f~~~~~a~r~~~k~----g---- 75 (203)
T cd00011 4 LELQLELLRETKRKYESVLQLGRALTAHLYSLSQTQHALGDAFADLSQKDPELAGEEFGYNAEAQKLLCKN----G---- 75 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh----H----
Confidence 34444455666667778888889999999999999999999999999888653267788877776655432 1
Q ss_pred HhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 270 MNFEEPLKDYVRAVQSIKA-TIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 270 ~~~~e~l~~~~~~~~s~k~-~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
..+..+|..++..+.-+.+ ++.+-..-+..|+.+.-+.......+..+.....+-++.--.++..+....+.++.+|+.
T Consensus 76 ~~ll~~l~~~~~~l~T~~~kai~DT~lTI~~ye~aR~EY~a~~l~~ke~~~e~~~~~~~~~~k~r~~q~~~~~~k~kf~k 155 (203)
T cd00011 76 ETLLGAVNFFVSSINTLVTKAIEDTLLTVKQYEAARLEYDAYRLDLKELSLEPRDDTAGTRGRLRSAQATFQEHRDKFEK 155 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhHHHHHHHHHHhcccCCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 1233344444443322221 121222223333333333333333333332111111222234566677888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 349 IVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 349 i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~ 394 (403)
....+..=++-....|..+|...|..|......|+..+....+.+.
T Consensus 156 Lr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~~ 201 (203)
T cd00011 156 LRGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQTL 201 (203)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 9999999999999999999999999999999999999988887764
|
The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is |
| >cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.3e-05 Score=68.95 Aligned_cols=157 Identities=15% Similarity=0.135 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHH--
Q 043025 219 RELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVR-AVQSIKATIAERAN-- 295 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~-~~~s~k~~l~~R~~-- 295 (403)
..|+..+.+-|..|........++|+.++..+|.+..+++.....+-......|+++|..++. .+ +++-+.|.+
T Consensus 81 ~aLs~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d~---k~i~k~RKkle 157 (242)
T cd07600 81 HALSRAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTSF---QKAHKARKKVE 157 (242)
T ss_pred HHHHHHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 344555555555554443333467889999999999999988777777777889888888776 33 333333332
Q ss_pred -HHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 296 -AFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHN 374 (403)
Q Consensus 296 -~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~ 374 (403)
.-.+|..+..++.+. ...+|-+.+..+++.++ .+|..-++....-+..+.. ..+.-+.|..
T Consensus 158 ~~RLd~D~~K~~~~ka---------~~~~k~~~~~~e~E~aE-------def~~a~E~a~~~M~~il~--~~e~i~~L~~ 219 (242)
T cd07600 158 DKRLQLDTARAELKSA---------EPAEKQEAARVEVETAE-------DEFVSATEEAVELMKEVLD--NPEPLQLLKE 219 (242)
T ss_pred HHHHHHHHHHHHHHhc---------cccccccchHHHHHHHH-------HHHHHhHHHHHHHHHHHHh--hhHHHHHHHH
Confidence 233555554433221 12233344444444444 4444444444444444432 2678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043025 375 FSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 375 ~a~~qi~~~~~~~~~We~~~~~ 396 (403)
|+..|+.||+++.+..+.+++.
T Consensus 220 fv~AQl~Yh~~~~e~L~~l~~~ 241 (242)
T cd07600 220 LVKAQLAYHKTAAELLEELLSV 241 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998865
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00059 Score=59.07 Aligned_cols=178 Identities=13% Similarity=0.165 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 043025 204 LAEAQKHAYRLVKRHRELGESLSDFGKAAKLLG-----ACEGD---ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEP 275 (403)
Q Consensus 204 l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~-----~~e~~---~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 275 (403)
++.|.+....++...++++.+...|+..+..++ +.+.+ .+..++..+++++..+.+......+.....+..+
T Consensus 18 ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l~~~ 97 (207)
T cd07636 18 IKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIENASEVLITP 97 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444 22211 3667888899888888877776666666777778
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 276 LKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM-LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLM 353 (403)
Q Consensus 276 l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~ 353 (403)
|..++. .+..+|+.=+.=++.-..|+.+..+ ...+. ..++ .++++++..+...+..|..++-..
T Consensus 98 L~~F~kedi~~~Ke~kK~FdK~se~~~~al~k-------~~~ls~k~K~-------~~~eEA~~~L~~~r~~F~~~sLdY 163 (207)
T cd07636 98 LEKFRKEQIGAAKEAKKKYDKETEKYCAVLEK-------HLNLSSKKKE-------SQLHEADSQVDLVRQHFYEVSLEY 163 (207)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhhhHHHHHHHH-------HhcCcccCCc-------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765 3556666433222233334333221 11221 1223 356666777777888898888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 354 NEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 354 ~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
.-.|...+..|..+|...|..|...+..|+++-.++.+++.|
T Consensus 164 V~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~~ 205 (207)
T cd07636 164 VFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFSD 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 889999999999999999999999999999999999988765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o |
| >cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2 | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0004 Score=60.09 Aligned_cols=179 Identities=14% Similarity=0.168 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 043025 204 LAEAQKHAYRLVKRHRELGESLSDFGKAAKLLG-----ACEG---DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEP 275 (403)
Q Consensus 204 l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~-----~~e~---~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 275 (403)
++.|.+....++...+.++.+...|+..+..++ +... ..++..++.+++....+.+............+..|
T Consensus 18 i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~p 97 (207)
T cd07635 18 IKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALNVTETLIKP 97 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444 2211 13456777888877777776666666666777778
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 276 LKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMN 354 (403)
Q Consensus 276 l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~ 354 (403)
|..+.. .+..+|+.=+.=++.-.+++.+..+ .-.+...+ | +.++++++..+...+..|...+-...
T Consensus 98 L~~F~kedl~~~Ke~KK~FdK~se~~~~Al~K-------~~~ls~kk--k----~~e~~EA~~~l~~~r~~F~~~sLdYv 164 (207)
T cd07635 98 LERFRKEQLGAVKEEKKKFDKETEKNYSLLEK-------HLNLSAKK--K----EPQLQEADVQVEQNRQHFYELSLEYV 164 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-------HHhccCCC--C----ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877765 3555555322222222333333222 11121111 1 12455777788888899999999989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 355 EEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 355 ~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
..|...+..|..+|...|..|+..++.|+++-.++.+++.|
T Consensus 165 ~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~~ 205 (207)
T cd07635 165 CKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFNH 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 99999999999999999999999999999999999988865
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote |
| >PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0005 Score=61.12 Aligned_cols=195 Identities=16% Similarity=0.209 Sum_probs=128.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG-DALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~-~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
|..+..--+-+++....+.+|.+.++.+..+...++.....||..|..++.-|. +.++..+..+|++...++..-..
T Consensus 32 D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~l~~~f~~~~~~~~~~~~~~~~-- 109 (229)
T PF06456_consen 32 DDELDAKLELLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKSPALGEEFSANGEAQRSLAKQGET-- 109 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCGHHHHHHHHHHHHHHHHHHHH--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 677777777778888888999999999999999999999999999999999664 45788898888887766543222
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIK-ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k-~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
+..+|..+...+.-+. .++.+=..-+..|+.+.-+.......++.+..........-...+...+...+.++.
T Consensus 110 ------L~~~l~~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY~ay~~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~k~ 183 (229)
T PF06456_consen 110 ------LLKALKRFLSDLNTFRNKAIPDTLLTIKKYEDARFEYDAYRLWLKEMSDELDPDTAKQEPKFRVAQGNYQEAKE 183 (229)
T ss_dssp ------HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TSTSSTTCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhcccchHHHHHHHHHHHHH
Confidence 2333333333221111 112121222233333333333333333333210000111113444555666788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADA 389 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~ 389 (403)
+|+.....+..=+.-.+..|..+|...|.-|......|+..+...
T Consensus 184 rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~~ 228 (229)
T PF06456_consen 184 RFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQA 228 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 999999999999999999999999999999999999999888764
|
The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D. |
| >cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1 | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0002 Score=63.10 Aligned_cols=138 Identities=14% Similarity=0.156 Sum_probs=88.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHH
Q 043025 240 GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA---FRQQCELAETMKLKEINLDK 316 (403)
Q Consensus 240 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~---~~~~~~~~~~l~~k~~~l~k 316 (403)
.+.++.++..+|.+..+++............+|+.||..++.- .++++-+.|.+. -.+|..+..++.+
T Consensus 88 ~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~--dik~i~k~RKkLe~rRLdyD~~K~r~~k------- 158 (229)
T cd07616 88 GTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEG--DYKTITKERKLLQNKRLDLDAAKTRLKK------- 158 (229)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3578899999999999999887766666666899999888753 344444444432 2355555443322
Q ss_pred hcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 317 LMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 317 l~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+.++++-...+.+ ++.++.+|+.-++.+..=+..+. ....+....|.+|++.|+.||+++.+..+++...
T Consensus 159 --Ak~~~~~~~~e~e-------lr~ae~efees~E~a~~~m~~i~-~~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~~~ 228 (229)
T cd07616 159 --AKVAEARAAAEQE-------LRITQSEFDRQAEITRLLLEGIS-STHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQKQ 228 (229)
T ss_pred --CCcchhhcchHHH-------HHHHHHHHHHHHHHHHHHHHhhh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1122332223344 44444445544444433222222 3357788999999999999999999999998764
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact |
| >cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1 | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00027 Score=61.95 Aligned_cols=149 Identities=14% Similarity=0.195 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH--
Q 043025 219 RELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA-- 296 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~-- 296 (403)
.-||..|.+.|..|. +.+.++.++..+|.+..+++.....+.......|++||..+.. ..++++.+.|.++
T Consensus 67 ~~Lg~~M~~~G~elg-----~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~--~dik~i~k~RKkLe~ 139 (223)
T cd07613 67 ALLAEAMLKFGRELG-----DECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHD--KDLREIQHHLKKLEG 139 (223)
T ss_pred hHHHHHHHHHHhhCC-----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 334455554443332 2357899999999999999999888888888999999988742 2334444444332
Q ss_pred -HHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 297 -FRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 297 -~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
-.+|..+ +.++ ++. .+.+++.++.+|+.-.+.+...+..|-.. ..+.-..|.+|
T Consensus 140 rRLd~D~~-------K~r~--------~k~---------~eeElr~A~~kFees~E~a~~~M~n~l~~-e~e~~~~L~~f 194 (223)
T cd07613 140 RRLDFDYK-------KKRQ--------GKI---------PDEELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQLSAL 194 (223)
T ss_pred HHHhHHHH-------HHhC--------CCC---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHH
Confidence 1233322 1111 121 15566666777777777777666666643 34566699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 376 SKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 376 a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
++.|+.||+++.++.+++.+.++.
T Consensus 195 veAQl~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07613 195 VQAQLEYHKQATQILQQVTVKLED 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i |
| >cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2 | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00047 Score=60.21 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=81.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHH
Q 043025 240 GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN---AFRQQCELAETMKLKEINLDK 316 (403)
Q Consensus 240 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~---~~~~~~~~~~~l~~k~~~l~k 316 (403)
.+.++.++..+|.+..+++.+...+......+|++||..+..- .++++-+.|.+ .-.+|..+..++.+
T Consensus 88 ~s~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~--dlk~i~k~RKkLe~rRLd~D~~K~r~~k------- 158 (220)
T cd07617 88 GTPYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEG--DWKTISKERRLLQNRRLDLDACKARLKK------- 158 (220)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3578899999999999999987777777788899999887661 12222222322 12344443322211
Q ss_pred hcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 317 LMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 317 l~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
+ +.+++.++.+|+.-++....=+..+.. ...+-...|.+|++.|+.||+++.+..+++.+.
T Consensus 159 -----------a-------e~elr~A~~kf~~~~E~a~~~M~~il~-~~~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 219 (220)
T cd07617 159 -----------A-------EHELRVAQTEFDRQAEVTRLLLEGISS-THVNHLRCLHEFVEAQATYYAQCYRHMLDLQKQ 219 (220)
T ss_pred -----------c-------HHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 234444555555544433332333321 124566789999999999999999999998765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified |
| >cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1 | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00069 Score=60.05 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHH
Q 043025 241 DALGKAFSELGMKS-EALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN---AFRQQCELAETMKLKEINLDK 316 (403)
Q Consensus 241 ~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~---~~~~~~~~~~~l~~k~~~l~k 316 (403)
..++.++ .++.++ ..++......-......|++||..... .-++++.+.|.+ ...+|..+...+......-..
T Consensus 77 S~lg~aL-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e--~dL~~I~k~rKkL~k~~LD~D~~K~R~~~a~k~s~~ 153 (257)
T cd07620 77 SSIRRVL-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSE--EDLPEILKNKKQFAKLTTDWNSAKSRSPQAAGRSPR 153 (257)
T ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--hhHHHHHHHHHHHHhHHhhHHHHHHHHHHhhccccC
Confidence 3677777 555555 777777666666777889999988766 344555555544 234666655443221100000
Q ss_pred hccc------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 317 LMLT------------RSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLAS 384 (403)
Q Consensus 317 l~~~------------~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~ 384 (403)
-++ ...|++.++++++++..+ |+.-......++-.|- .++.++-..|..|++.|.+||+
T Consensus 154 -~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K-------~E~~kd~~~a~Mynfl-~kE~e~a~~l~~lveaQ~~YHr 224 (257)
T cd07620 154 -SGGRSEEVGEHQGIRRANKGEPLKEEEEECWRK-------LEQCKDQYSADLYHFA-TKEDSYANYFIRLLELQAEYHK 224 (257)
T ss_pred -CccccccccccccccccccccccHHHHHHHHHH-------HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHH
Confidence 011 124655665555555555 4444444566677776 4689999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 043025 385 SIADAWRTLLPKLEAC 400 (403)
Q Consensus 385 ~~~~~We~~~~~~~~~ 400 (403)
+.++..+.++|.++.-
T Consensus 225 qsl~~Le~~l~~~~~~ 240 (257)
T cd07620 225 NSLEFLDKNITELKEN 240 (257)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998753
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1 | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0017 Score=55.81 Aligned_cols=200 Identities=14% Similarity=0.154 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 192 KLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMN 271 (403)
Q Consensus 192 ~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (403)
-.+..++++-...+.+.......+.....+...+.+||..+- +.. ...+++++..++..+..+........+.....
T Consensus 13 ~~e~~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~--~~d-d~~i~~a~~kfs~~~~El~~~~k~L~~~~~~~ 89 (215)
T cd07641 13 QDRTALQKVKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFL--SRD-NPDLGTAFVKFSTLTKELSTLLKNLLQGLSHN 89 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555566666554431 112 24678889999999999988888777777777
Q ss_pred hhHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 272 FEEPLKDYVR-AVQSIK-ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETI 349 (403)
Q Consensus 272 ~~e~l~~~~~-~~~s~k-~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i 349 (403)
+.-+|..++. .+.-+| |+=+.=++++.+|+.+..+.++.+.+. .++.-++..+..=.++.+.++..+..|...
T Consensus 90 v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~-----~K~~e~~r~e~~~~Eaa~~l~~~Rr~Fq~~ 164 (215)
T cd07641 90 VIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREH-----AKQHGMIRTEITGAEIAEEMEKERRLFQLQ 164 (215)
T ss_pred HHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhh-----cCcccchhccccchhHHHHHHHHHHHHHHH
Confidence 7777777654 466666 544444455666666655444322111 122111111111113444555566666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 350 VRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 350 ~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
.-.-.--+.-.+..+..++.+.|.+|...|..|+++-....+++.|.++.
T Consensus 165 a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~k~ 214 (215)
T cd07641 165 MCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYIEK 214 (215)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55544555667778899999999999999999999999999999998864
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar |
| >KOG4773 consensus NADPH oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-06 Score=78.46 Aligned_cols=102 Identities=27% Similarity=0.386 Sum_probs=85.2
Q ss_pred EEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC---------ccCCCCCCCccccc
Q 043025 28 VSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG---------IFIPPLPEKSAVEK 98 (403)
Q Consensus 28 v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~---------~~iP~lP~k~~~~~ 98 (403)
..|-+.+++...+ +|.+|.|.++. +++....|+|||-+|..++..|.+++++ |++|+||.+..++
T Consensus 24 ~kvi~~eke~~f~-~hFvyVievkw----~~~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~fd- 97 (386)
T KOG4773|consen 24 AKVIDAEKERSFT-SHFVYVIEVKW----YGGSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYFD- 97 (386)
T ss_pred HHHHhHHHhcccc-hheEEEEEehh----hccccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEec-
Confidence 3455666655554 48999998875 3667899999999999999999999975 7899999999997
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCccccC-Chhhhcccc
Q 043025 99 FRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQ 137 (403)
Q Consensus 99 ~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~-~~~~~~FL~ 137 (403)
+..+..++|...|..|+..+++-|+.+- ++.++.|.-
T Consensus 98 --fkqe~Ae~r~~~ln~y~e~LlslPi~~l~~p~l~~fff 135 (386)
T KOG4773|consen 98 --FKQEIAEERIPALNAYCEWLLSLPIGRLGGPGLRPFFF 135 (386)
T ss_pred --hhhhhhhhhhHHHHHHHHHHHhcchhhcCCCCceeeee
Confidence 8899999999999999999999997754 777777654
|
|
| >KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.6e-06 Score=79.63 Aligned_cols=94 Identities=23% Similarity=0.375 Sum_probs=71.6
Q ss_pred CCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhc-CCccCCCCCCCc-------cccccCCCHHHHHH
Q 043025 37 GNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY-KGIFIPPLPEKS-------AVEKFRFSAEFIEM 108 (403)
Q Consensus 37 ~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~-p~~~iP~lP~k~-------~~~~~~~~~~~i~~ 108 (403)
++....|++|.|.+...-...+...|.|+|||+||..||..|.+.| |...+| .|... ..+ +++..++..
T Consensus 129 ~~~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~ 205 (362)
T KOG2101|consen 129 REKSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFP-GPKFRNEIQKKKLLG--NFDADVIPE 205 (362)
T ss_pred cccccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCC-CccchhHHHHHHhhc--cchhhhhhh
Confidence 3445689999999986432223346999999999999999999999 776653 33333 334 889999999
Q ss_pred HHHHHHHHH--HHHhcCccccCChhhh
Q 043025 109 RRQGLDLFV--NRIASHPELQQSEDLK 133 (403)
Q Consensus 109 R~~~L~~fl--~~~~~~~~l~~~~~~~ 133 (403)
|+..++.|| +....+|.+.++..+.
T Consensus 206 r~~~~~~fl~~~f~~~~~~~~~~~~~~ 232 (362)
T KOG2101|consen 206 RSEALEEFLSLQFKDSKPSNVNCKKVM 232 (362)
T ss_pred hhhhHHHHHHhhhhhccccccchHHhh
Confidence 999999999 7777777777665444
|
|
| >cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1 | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0052 Score=53.12 Aligned_cols=189 Identities=13% Similarity=0.093 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 192 KLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGAC------EGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 192 ~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~------e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.+.+|...+-..+ .++....++|+.+-..|+..+...-.- ..+.+.+++..+++++..+........
T Consensus 13 ~~~~~~~~~~~~~-------~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~ 85 (215)
T cd07631 13 AISNYFNQLFQAM-------HRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLS 85 (215)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555444444 444445555555555555555544310 123477889999999999988888888
Q ss_pred HHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc-CcchHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT-RSDKVGEAEIEYKELKAESEDST 343 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~-~~~ki~~l~~~i~~~~~~~~~~~ 343 (403)
+.....+..||..++. .+..+|+.=+.=++.-.+++.+.. +-..+... +++++ .+++...+...+
T Consensus 86 ~q~~~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se~~d~Al~-------K~a~lsk~K~~E~~------~eea~~~v~~tR 152 (215)
T cd07631 86 TQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAIN-------RYSRLSKRRENEKV------KYEVTEDVYTSR 152 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------HHhcCCCCCCchHH------HHHHHHHHHHHH
Confidence 8777788888888765 455666632222222223333322 21222211 12222 122344455577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhc
Q 043025 344 RRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIAD-AWRTLLPKLEAC 400 (403)
Q Consensus 344 ~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~-~We~~~~~~~~~ 400 (403)
..|..+.-.....|...+..|..+|...|..|++.++.|+++-.+ .-.++-|-+..+
T Consensus 153 ~~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e~L~~dl~~f~~~l 210 (215)
T cd07631 153 KKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLTNI 210 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 888888888888999999999999999999999999999998888 333444444433
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo |
| >cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1 | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0073 Score=51.81 Aligned_cols=184 Identities=11% Similarity=0.115 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 198 FELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGA-----CE---GDALGKAFSELGMKSEALSVKLQREAHQLL 269 (403)
Q Consensus 198 ~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~-----~e---~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (403)
.+++..++.|.+....++...+.++.+...|+..+..+.- .. .-.+++++..+++.+..+-+......+.-.
T Consensus 12 e~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d~aq 91 (207)
T cd07633 12 ERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQNAS 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555555555544444432 11 123677888888888888777666666666
Q ss_pred HhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh-cccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 270 MNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKL-MLTRSDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 270 ~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl-~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
..+..+|..++. .+..+|+.=+.=++.-..++.+..+ -..+ ...++ .+++++...+...+..|.
T Consensus 92 ~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~~aL~k-------~a~~s~k~K~-------~e~eEA~~~L~~~r~~F~ 157 (207)
T cd07633 92 DLLIKPLENFRKEQIGFTKERKKKFEKDSEKFYSLLDR-------HVNLSSKKKE-------SQLQEADLQVDKERQNFY 157 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH-------HhcccccCCc-------hHHHHHHHHHHHHHHHHH
Confidence 677777777654 3445555322111111222222211 1111 01122 355666777777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 348 TIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 348 ~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
.++-.-.-.|.-.+..+.-++-..|.+|...+..||.+-.++..++.|
T Consensus 158 ~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~~ 205 (207)
T cd07633 158 ESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFLP 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 888887778888999999999999999999999999999998888765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.01 Score=52.70 Aligned_cols=195 Identities=13% Similarity=0.154 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 196 YIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-----GDALGKAFSELGMKSEALSVKLQREAHQLLM 270 (403)
Q Consensus 196 ~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (403)
-++++...+.+|.+.+.++.+..+.++.+...|..++..++..- ...++.++..++.....+.............
T Consensus 4 i~~~~~P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~ 83 (219)
T PF08397_consen 4 IMEDFNPAWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELEEVFKAFHS 83 (219)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777788888888888888888888888887532 3467888888888888887777777777777
Q ss_pred hhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccc----CcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 271 NFEEPLKDYVRA-VQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLT----RSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 271 ~~~e~l~~~~~~-~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~----~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
.|..||..-+.. ...+.+ + ......++....+.+.+....+.+++.. +.+....+...++.++.....+..-
T Consensus 84 ~li~pLe~~~e~d~k~i~~-~--~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~kgk~~~~~~~~~~~~~v~~~~~ele~~ 160 (219)
T PF08397_consen 84 ELIQPLEKKLEEDKKYITQ-L--EKDYEKEYKRKRDELKKAESELKKLRKKSRKGKDDQKYELKEALQDVTERQSELEEF 160 (219)
T ss_dssp HTHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhH-H--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHHHH
Confidence 777777665543 222222 2 2223457777777888777777776522 2222233344455554444444433
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 346 FETIVRL-MNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 346 ~~~i~~~-~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
....... +..|-.|| --|-+.+..++...+.+|.+.....+..++...
T Consensus 161 ~~~~~r~al~EERrRy-----c~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~ 209 (219)
T PF08397_consen 161 EKQSLREALLEERRRY-----CFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQ 209 (219)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3333333 34444444 445666667777777777765555555555443
|
In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A. |
| >PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.016 Score=52.23 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 043025 202 NHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVR 281 (403)
Q Consensus 202 ~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ 281 (403)
..|..|-+.-..++.....++.+....+..+..|+..+.+.|+++..++|..+..++..... |...+..|..
T Consensus 57 r~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~--------~a~~~d~yR~ 128 (271)
T PF13805_consen 57 RKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQ--------YADRLDQYRI 128 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 34455555666667777788888888899999999888777888777777777666655333 4444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 282 AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM--LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVR 359 (403)
Q Consensus 282 ~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~--~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~ 359 (403)
.+.+|++ ++..++....-.+++. .++.+|+ .....|+..|++++..++.+...++..+..++....+|--.
T Consensus 129 ~LK~IR~----~E~sl~p~R~~r~~l~---d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~ 201 (271)
T PF13805_consen 129 HLKSIRN----REESLQPSRDRRRKLQ---DEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYS 201 (271)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHhHHHHHhHHHH---HHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHH
Confidence 5544333 3333333222222222 2223333 33456999999999999988877777777776664444322
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 043025 360 FQEQKTLDMGIAFHNFSKGQA 380 (403)
Q Consensus 360 f~~~r~~~l~~~l~~~a~~qi 380 (403)
.+ -.+|.++++.++
T Consensus 202 ~~-------f~Al~E~aEK~~ 215 (271)
T PF13805_consen 202 LK-------FDALIERAEKQA 215 (271)
T ss_dssp HH-------HHHHHHHHHHHH
T ss_pred HH-------HHHHHHHHHHHH
Confidence 21 234555555554
|
|
| >cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3 | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.012 Score=50.04 Aligned_cols=192 Identities=13% Similarity=0.159 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 043025 198 FELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLK 277 (403)
Q Consensus 198 ~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 277 (403)
.++...++.+......-+.....++..+..||... ++.. +..++.+|-.++-....++..+..........+.=|++
T Consensus 19 ~k~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~--l~~~-~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpld 95 (213)
T cd07640 19 QRIKKIVKAIHNSGLNHVENEEQYTEALENLGNSH--LSQN-NHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLD 95 (213)
T ss_pred HHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhh--hcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchH
Confidence 33344444444555555555566666666666332 3332 35688888888888888887777777766666666777
Q ss_pred HHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 278 DYVR-AVQSIK-ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNE 355 (403)
Q Consensus 278 ~~~~-~~~s~k-~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~ 355 (403)
.++. .+.-+| ++-+.=++++.+|+.+..+.+ +.+..++....-..-+..++.+.++..+..|....-.-.-
T Consensus 96 sflK~dlr~~K~D~KK~FeK~skDyE~kl~K~a-------k~~r~k~~~~g~~~~e~eEaae~l~~eRr~Fql~acdYll 168 (213)
T cd07640 96 SLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLE-------KERREKQKQHGLIRLDMTDTAEDMQRERRNFQLHMCEYLL 168 (213)
T ss_pred HHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHh-------ccccccchhcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654 455555 544444445555555544332 2221111000001124455666677777777665555445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 356 EIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 356 El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
-+.-.+..+..|+-+.|.+|...|..|+++-....+++.|.++.
T Consensus 169 kin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyik~ 212 (213)
T cd07640 169 KAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFIEK 212 (213)
T ss_pred HHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 56666677889999999999999999999999999999998875
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran |
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.83 E-value=7e-05 Score=77.96 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=88.7
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC-CH
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF-SA 103 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~-~~ 103 (403)
...|+|...+++-.. +++..|.|++... .......+.|.|.+|..||..|+..||...+|.+|..-..+ +. -.
T Consensus 1375 i~~v~v~~f~K~~~p-nK~YmYvveV~r~---n~~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~g--rsnik 1448 (1639)
T KOG0905|consen 1375 ISEVTVLKFEKHYSP-NKIYMYVVEVTRE---NQAEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHLG--RSNIK 1448 (1639)
T ss_pred eEEEEEEEeeeeccC-CceEEEEEEEEec---CCCCchHHHHhHHHHHHHHHHHHHhCccccCCCCCceeeec--ccchh
Confidence 456888888887643 5788999999752 12234679999999999999999999999999999988887 44 46
Q ss_pred HHHHHHHHHHHHHHHHHhcC-ccccCChhhhccccc
Q 043025 104 EFIEMRRQGLDLFVNRIASH-PELQQSEDLKTFLQA 138 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~-~~l~~~~~~~~FL~~ 138 (403)
...++|...|+.||..|..- +.+..++.+..|+-+
T Consensus 1449 aVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFFhp 1484 (1639)
T KOG0905|consen 1449 AVAEKRIIELNKYLISLFNASDEVAHCDLVYTFFHP 1484 (1639)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhhccceeeeeech
Confidence 77889999999999999965 588889999998865
|
|
| >cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00027 Score=53.53 Aligned_cols=68 Identities=29% Similarity=0.425 Sum_probs=52.9
Q ss_pred ceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhh-----cCCccCCCCCCCccccccCCCHHHHHHHHHHHHHH
Q 043025 42 AYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEK-----YKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLF 116 (403)
Q Consensus 42 ~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~-----~p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~f 116 (403)
+=++|.|.+.+ .+..|.|.|+|.||..|.+.|..- |.+ +++||+..... ..++.+ ...|..|
T Consensus 26 ~e~~~~v~v~C-----qgrsw~VkRSyEdfr~LD~~LHrCvyDRrfS~--L~eLp~~~~l~---~~~~~v---~~~l~~Y 92 (115)
T cd07298 26 KELVYLVQIAC-----QGRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQ--LPELPRSDSLK---DSPESV---TQMLMAY 92 (115)
T ss_pred CCeEEEEEEEe-----CCCceEEEeeHHHHHHHHHHHHHHHHhhhhhc--cccCCCccccc---ccHHHH---HHHHHHH
Confidence 56789998887 467999999999999999888754 544 88999977554 345555 4688888
Q ss_pred HHHHhc
Q 043025 117 VNRIAS 122 (403)
Q Consensus 117 l~~~~~ 122 (403)
|.++..
T Consensus 93 L~RlS~ 98 (115)
T cd07298 93 LSRLSA 98 (115)
T ss_pred HHHHHH
Confidence 888775
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and |
| >cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2 | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.02 Score=49.25 Aligned_cols=182 Identities=12% Similarity=0.079 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 043025 205 AEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE------GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKD 278 (403)
Q Consensus 205 ~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e------~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~ 278 (403)
+.|.+...++.....+++.+...++..+.....-+ .+.+.+.+..+++.++.+........+.....+..||..
T Consensus 19 ~~l~~~~~~~~~~~~~~~~a~~~~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~ 98 (215)
T cd07632 19 NQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQ 98 (215)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666667777777777776665554322 235678899999999999888777777777778888877
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 043025 279 YVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELK--AESEDSTRRFETIVRLMNE 355 (403)
Q Consensus 279 ~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~--~~~~~~~~~~~~i~~~~~~ 355 (403)
++. .+..+|+.=+.=++.-.+++.+.. +...+...++ .++.+++ ..+...+..|..++-.-.-
T Consensus 99 F~KeDl~~vKe~KK~FdK~Se~~d~AL~-------KnaqlskkK~-------~E~~eae~~~~l~~sRr~F~~~ALdYV~ 164 (215)
T cd07632 99 FREKDLTEVSTLKDLFGIASNEHDLSMA-------KYSRLPKKRE-------NEKVKAEVAKEVAYSRRKQHLSSLQYYC 164 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHhhCCcCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765 455555532211112222333222 1122221221 1222222 3466777788888878777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhc
Q 043025 356 EIVRFQEQKTLDMGIAFHNFSKGQARLASS----IADAWRTLLPKLEAC 400 (403)
Q Consensus 356 El~~f~~~r~~~l~~~l~~~a~~qi~~~~~----~~~~We~~~~~~~~~ 400 (403)
.|.-.+..|..+|-..|..|...++.|+++ +-..|++++..+..+
T Consensus 165 qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL~~~~~~~~~~~~~~~ 213 (215)
T cd07632 165 ALNALQYRKRVAMLEPMLGYTHGQINFFKKGAELFSKKLDSFLSSVSDM 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888888999999999999999999988865 455688888776554
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac |
| >cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.023 Score=48.67 Aligned_cols=190 Identities=13% Similarity=0.184 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-GDALGKAFSELGMKSEALSVKLQREAHQLLMNFE 273 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (403)
+.++.....+.++...+.+++.+..++......||..|..+|.-| ++.++..|..+|++...+...-...... ..-|.
T Consensus 9 e~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~~p~l~eeF~~~ae~hR~l~k~G~~ll~a-i~~~~ 87 (215)
T cd07659 9 EELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREPQPAASEAFTKFGEAHRSIEKFGIELLKT-LKPML 87 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHhHHHHHHHHHhHHHHHHH-hHHHH
Confidence 334444555677778888888888999999999999999999876 3568888888887776664432222211 12222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc---------cCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 274 EPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLML---------TRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 274 e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~---------~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
..|.-|+.- ++-| -..-+..|..+.-+...-..+++.+.. ...-+++...-+..-.-..-+.++.
T Consensus 88 s~l~T~l~K--aipD----T~lTikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~ 161 (215)
T cd07659 88 SDLGTYLNK--AIPD----TKLTIKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARA 161 (215)
T ss_pred HHHHHHHHh--hCch----HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHH
Confidence 233333321 1111 112233444444444444444444431 1122444444444444445588899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWR 391 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We 391 (403)
+|+.+-..+..=+.-.+..++.++..-|.-|......|+..+.+...
T Consensus 162 kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~~~ 208 (215)
T cd07659 162 RFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHELLK 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998887754
|
The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th |
| >PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.013 Score=53.66 Aligned_cols=139 Identities=17% Similarity=0.185 Sum_probs=96.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHH
Q 043025 240 GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERAN---AFRQQCELAETMKLKEINLDK 316 (403)
Q Consensus 240 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~---~~~~~~~~~~~l~~k~~~l~k 316 (403)
.++|+.++..++.+..+++..--.+-......|+.+|...+.. .++.+-+-|.+ +-.++..+..++..
T Consensus 147 ~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln~--~~~~a~k~RkkV~~sRL~~D~~R~~~k~------- 217 (289)
T PF10455_consen 147 EDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLNT--DFKKANKARKKVENSRLQFDAARANLKN------- 217 (289)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcc-------
Confidence 3578999999999999998887777677777788777665542 12222222322 22344444333221
Q ss_pred hcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 317 LMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 317 l~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
..++.+-++ +..+++.++++|...++....++..+-. ..++-..|..|+..|+.||+.+++..+.++..
T Consensus 218 --~~~pekee~-------~r~~lE~aEDeFv~aTeeAv~~Mk~vl~--~~e~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~ 286 (289)
T PF10455_consen 218 --KAKPEKEEQ-------LRVELEQAEDEFVSATEEAVEVMKEVLD--NSEPLRLLKELVKAQLEYHKKAAEALSELLKS 286 (289)
T ss_pred --cCCcccCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 123444443 4455667777888889998888888874 47788999999999999999999999999987
Q ss_pred hh
Q 043025 397 LE 398 (403)
Q Consensus 397 ~~ 398 (403)
++
T Consensus 287 l~ 288 (289)
T PF10455_consen 287 LD 288 (289)
T ss_pred cc
Confidence 75
|
Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO []. |
| >cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.045 Score=46.54 Aligned_cols=188 Identities=14% Similarity=0.127 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 193 LKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNF 272 (403)
Q Consensus 193 ~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (403)
.-+.++........+.+.++.+..+...++..-..||..|..++.-+.+.-+......|+.....+.. ....
T Consensus 7 kielfrsvq~t~~~Llk~i~~yq~~l~~lsq~e~~LG~fl~e~~~~d~t~ag~~m~~t~KaL~~sg~q--------rl~~ 78 (204)
T cd07661 7 KLELFRSVQDTCLELLKIIDNYQERLCILSQEENVLGKFLKEQGKIDKTTAGKMMAATGKALSFSSQQ--------RLAL 78 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhccHHHHHHHHHHHhHHH--------HHHH
Confidence 33455556666677778888888888899999999999999998776432233344444443333221 1122
Q ss_pred hHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 273 EEPLKDYVRAVQSIK--------ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 273 ~e~l~~~~~~~~s~k--------~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
..||..+...+.-+. ..++.-+.+-.+|..+...++.--. .| +|+--..+ ..+..+...++..+.
T Consensus 79 r~pl~~f~~~v~Tf~~rai~Dtl~Ti~~~E~aR~EY~a~~~~mk~~s~---el---dP~~~~~l-~kfr~aQ~qvr~~K~ 151 (204)
T cd07661 79 RVPLLRLYQEVETFRERAIADTLQTIQRMEKCRTEYRAALLWMKSVSQ---EL---DPDTYKQL-EKFRKAQAQVRSAKE 151 (204)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhh---hc---CCccchhH-HHHHHHHHHHHHHHH
Confidence 234444444333222 1122222223334433333321110 01 11111111 235566677777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
+|+.....+..=++-....|...|...|..|-...+.|+++.....+.+..
T Consensus 152 kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~~~i~~ 202 (204)
T cd07661 152 RFDKLKMDVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTMATIHE 202 (204)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888999999999999999988877777777777766666544
|
The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate |
| >cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.066 Score=47.36 Aligned_cols=191 Identities=15% Similarity=0.153 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 043025 201 ENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEG-----DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEP 275 (403)
Q Consensus 201 e~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~-----~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 275 (403)
...+.+|...+..+.+..+.++.+..-|..+|..+++.-. ..|+.++..+...+..+..............+..|
T Consensus 19 ~P~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~p 98 (223)
T cd07605 19 NPVLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQSRGSQELGEALKQIVDTHKSIEASLEQVAKAFHGELILP 98 (223)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666777777777777766532 25666666666655555554444444444555555
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc----ccCcch-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 276 LKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM----LTRSDK-VGEAEIEYKELKAESEDSTRRFETI 349 (403)
Q Consensus 276 l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~----~~~~~k-i~~l~~~i~~~~~~~~~~~~~~~~i 349 (403)
|..=+. ....+.+ + ......++....+.+++....+.|++ +..++| ...+...++.++... .+++.+
T Consensus 99 Le~k~e~d~k~i~~-~--~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~----~ele~~ 171 (223)
T cd07605 99 LEKKLELDQKVINK-F--EKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQ----KELEAF 171 (223)
T ss_pred hhhhHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHHHHHHHHH----HHHHHH
Confidence 443222 1111111 1 12234456666666666555555554 211222 223333333333333 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 350 VRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 350 ~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
...-..+.-.=++.|---|-+.+-.++...+.||.+........+|...
T Consensus 172 ~~~~lr~al~EERrRyc~lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w~ 220 (223)
T cd07605 172 VSQGLRDALLEERRRYCFLVDKHCSVAKHEIAYHAKAMTLLSTRLPLWQ 220 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 3333333333333344567777888888888888777777776666543
|
Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me |
| >KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.042 Score=49.67 Aligned_cols=146 Identities=13% Similarity=0.188 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 228 FGKAAKLLGACE--GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDY-VRAVQSIKATIAERANAFRQQCELA 304 (403)
Q Consensus 228 l~~~~~~l~~~e--~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~-~~~~~s~k~~l~~R~~~~~~~~~~~ 304 (403)
+|.++..++..- ....+..+..+|.++..++.+-.........+|.++|..+ ...+..+....+.-+..-+.|....
T Consensus 88 Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kk 167 (366)
T KOG1118|consen 88 LGDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKK 167 (366)
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 455555444322 2345666777888888888877777777777888888776 3333222221111111112222221
Q ss_pred HHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 305 ETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLAS 384 (403)
Q Consensus 305 ~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~ 384 (403)
. + ..|+. +.++. +|..+|+.-.+.+..-+-.+.. ...+=-+.|..+++.|++||+
T Consensus 168 k-------k--------~~K~~--dEelr-------qA~eKfEESkE~aE~sM~nlle-~d~eqvsqL~~Li~aqLdfhr 222 (366)
T KOG1118|consen 168 K-------K--------QGKIK--DEELR-------QALEKFEESKELAEDSMFNLLE-NDVEQVSQLSALIQAQLDFHR 222 (366)
T ss_pred H-------H--------hccCC--hHHHH-------HHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHH
Confidence 1 1 11111 12222 3333333333322222222221 122333557889999999999
Q ss_pred HHHHHHHHHHHHhh
Q 043025 385 SIADAWRTLLPKLE 398 (403)
Q Consensus 385 ~~~~~We~~~~~~~ 398 (403)
+.+.+.+.+...+.
T Consensus 223 qs~~iL~~l~~~l~ 236 (366)
T KOG1118|consen 223 QSTQILQELQMKLF 236 (366)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876553
|
|
| >KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.16 Score=50.06 Aligned_cols=175 Identities=15% Similarity=0.220 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----Hhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043025 209 KHAYRLVKRHRELGESLSDFGKAAKLL-----GACEG---DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV 280 (403)
Q Consensus 209 k~~~~l~k~~~~l~~~~~~l~~~~~~l-----~~~e~---~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~ 280 (403)
+....++...+.++.+...|+..++.+ ++.+. -.++..+..+|.....+-+-.-..+..-...+.+||..+.
T Consensus 41 kdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~ve~er~~~v~~Ase~li~PlekFR 120 (812)
T KOG1451|consen 41 KDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQVEDERMRMVGNASESLIEPLEKFR 120 (812)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHH
Confidence 333344444444444444444444333 22222 1456667777776666655444455555556677777665
Q ss_pred HH-HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 281 RA-VQSIKATIAERANAFR-----QQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMN 354 (403)
Q Consensus 281 ~~-~~s~k~~l~~R~~~~~-----~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~ 354 (403)
.. +...| .+.++.. .|+.+.+.|. | ...| +.+++++..+++..+..|-..+..-.
T Consensus 121 kEqIG~~K----E~KkKydKe~ekfy~~LekHLh--------L---Sskk----esqlqeAD~Qvd~~r~nFfe~SL~YV 181 (812)
T KOG1451|consen 121 KEQIGTLK----EEKKKYDKESEKFYQTLEKHLH--------L---SSKK----ESQLQEADAQVDTQRKNFFEASLQYV 181 (812)
T ss_pred HHHhhhhH----HHHhhhhhhhHHHHHHHHHHhc--------c---ccch----hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 23323 3332221 2222222221 1 1111 46677777788888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 043025 355 EEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACSS 402 (403)
Q Consensus 355 ~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~~ 402 (403)
.|+...+..+..+|-.-|..|+..-..++.--.++-++|++..+.++.
T Consensus 182 ~~vQeVQErk~FefVEpllafl~slf~f~h~g~el~qDF~pfk~qlq~ 229 (812)
T KOG1451|consen 182 AEVQEVQERKRFEFVEPLLAFLYSLFSFFHVGSELHQDFKPFKDQLQT 229 (812)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhHHHHhhhhhHHHHHHH
Confidence 899999999999999999999999999999999999999988877653
|
|
| >cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0021 Score=48.39 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=50.8
Q ss_pred cceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhc---CCccCCCCCCCccccccCCCHHHHHHHHHHHHHHH
Q 043025 41 QAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY---KGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFV 117 (403)
Q Consensus 41 ~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~---p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~fl 117 (403)
++.++|.|.+.+ .+..|.|.|.|.||..|.+.|-.-. ...-+++||+-...+ ... +.=...|..||
T Consensus 23 ~k~~~flv~V~c-----qgrsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~l~---~~~---~~~~~~l~~YL 91 (113)
T cd07299 23 EKDLVFLVQVTC-----QGRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLCEIG---DRL---QILTPLLSEYL 91 (113)
T ss_pred CCceEEEEEEEe-----cCcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCcccccc---chH---HHHHHHHHHHH
Confidence 567899999987 4679999999999999988887322 223467777764433 122 23357889999
Q ss_pred HHHhc
Q 043025 118 NRIAS 122 (403)
Q Consensus 118 ~~~~~ 122 (403)
.++..
T Consensus 92 ~RlS~ 96 (113)
T cd07299 92 NRLTG 96 (113)
T ss_pred HHHHH
Confidence 99875
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs |
| >cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.12 Score=47.20 Aligned_cols=77 Identities=16% Similarity=0.194 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
|+.++.+++...-..++.++..|..--..+...+..++..|...|+..|..|+...-......-...+.+...++.+
T Consensus 158 K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~~i 234 (261)
T cd07648 158 KLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENHSAVGQVHEEFKRQVDEL 234 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 44555556666666666677777666666778889999999999999999999998777777777777777777664
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.069 Score=46.94 Aligned_cols=167 Identities=17% Similarity=0.221 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---H
Q 043025 221 LGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANA---F 297 (403)
Q Consensus 221 l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~---~ 297 (403)
++.-|.+-|..| + +.++-++++-+++++..+++....+....-..+|+-||+.++.- -.|.+-+.|.-+ -
T Consensus 94 L~qyM~dAg~ef---G--ptTpYG~aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlEG--D~KTI~KERklLqnkR 166 (375)
T KOG3725|consen 94 LSQYMTDAGEEF---G--PTTPYGSALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLEG--DMKTIQKERKLLQNKR 166 (375)
T ss_pred HHHHHHHHHHhc---C--CCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhhc--cHHHHHHHHHHHhhcc
Confidence 444455544433 1 22356677778888888888877777776777888898887641 123322333322 2
Q ss_pred HHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 298 RQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFET---IVRLMNEEIVRFQEQKTLDMGIAFHN 374 (403)
Q Consensus 298 ~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~---i~~~~~~El~~f~~~r~~~l~~~l~~ 374 (403)
.++..+...+.+.+. ..++..+..|.. .-.+|+++++++..++.+|+. |+..+.+-|..-|. .-.++|.+
T Consensus 167 LDLDAcKsRLKKAKa--ae~q~~rN~~~s-~~~~ie~aEqelRvaQ~EFDrQaEiTrLLLEGIsstH~----nhLrCL~d 239 (375)
T KOG3725|consen 167 LDLDACKSRLKKAKA--AELQTVRNSKTS-GGFTIEQAEQELRVAQAEFDRQAEITRLLLEGISSTHN----NHLRCLRD 239 (375)
T ss_pred cChHHHHHHHHHhhh--hhhhcccccccc-CcchHhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhh----hHHHHHHH
Confidence 356666666655433 223222221111 114555666666666666664 44455555555443 33568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 375 FSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 375 ~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
|++.|..||-++....-++..++.+-.
T Consensus 240 FVeaQmtyYAQcyq~MlDLQkqLg~fp 266 (375)
T KOG3725|consen 240 FVEAQMTYYAQCYQLMLDLQKQLGGFP 266 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999888876543
|
|
| >cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.13 Score=46.01 Aligned_cols=65 Identities=9% Similarity=0.179 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 336 KAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 336 ~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
...++.+..+|+.=-..+..-+...+..|...|+++|..|+.....+..+.-+..|.++..+.++
T Consensus 145 ~~~l~~~~~~We~~~~~~~e~fQ~leeeRl~~lk~~l~~y~~~~sd~~~~~~~~~E~~~~~l~~~ 209 (228)
T cd07650 145 VSDLEEARQQWDSQAPFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTESAEECMNQLLEF 209 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhHHHHHHHHHHhCC
Confidence 45566777778777777778888899999999999999999999999999999999999888765
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0052 Score=46.48 Aligned_cols=89 Identities=26% Similarity=0.287 Sum_probs=60.1
Q ss_pred CcEEEEEcCceEeC-CC-CcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhc---CCccCCCCCCCccccc
Q 043025 24 PYLSVSVTDPVKLG-NG-VQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY---KGIFIPPLPEKSAVEK 98 (403)
Q Consensus 24 ~~~~v~V~~~~~~~-~~-~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~---p~~~iP~lP~k~~~~~ 98 (403)
..+++...+-.... .| .++-++|.|.+.+ .+..|.|.|.|.||..|.+.|-.-. ...-+++||+-....
T Consensus 5 G~iQ~~l~~~~~~~~~~~~~k~~~~~v~V~c-----qg~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~~- 78 (114)
T cd07278 5 GSLQVVLSDDGSLKSYKNSGKELVYLVQVQC-----QGKSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIEK- 78 (114)
T ss_pred cceEEEeccCcccCCCCCCCCceEEEEEEEe-----CCcceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCcccccc-
Confidence 34566666654442 22 3578899999987 5689999999999999988887422 223477777754432
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcC
Q 043025 99 FRFSAEFIEMRRQGLDLFVNRIASH 123 (403)
Q Consensus 99 ~~~~~~~i~~R~~~L~~fl~~~~~~ 123 (403)
..++-+ ...|..||.++...
T Consensus 79 --~~~~~~---~~~l~~YL~RlS~I 98 (114)
T cd07278 79 --REQQNL---HQVLSDYLKRLSSI 98 (114)
T ss_pred --chHHHH---HHHHHHHHHHHHHH
Confidence 233333 47889999988753
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d |
| >cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.19 Score=45.89 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
|..++.+++....+..+.++..|..--..+...+..++..|...|+.+|..|+.......-......+.+...++++
T Consensus 158 K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~i 234 (261)
T cd07674 158 KTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSVEDTHVQIGQVHEEFKQNVENV 234 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhC
Confidence 33444445555555555566666555555678899999999999999999998765444444555666666655544
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.18 Score=45.35 Aligned_cols=153 Identities=11% Similarity=0.184 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 242 ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQ--------SIKATIAERANAFRQQCELAETMKLKEIN 313 (403)
Q Consensus 242 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~--------s~k~~l~~R~~~~~~~~~~~~~l~~k~~~ 313 (403)
.+..++..+-...+.++......+..+...+.++|..|..-+. .+..+.+.+......+..+..+....-..
T Consensus 57 sl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~~ 136 (236)
T cd07651 57 GLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADCSK 136 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555566655556666665555555555556666655544322 11222222222222233332222222222
Q ss_pred HHHhc----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 314 LDKLM----LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADA 389 (403)
Q Consensus 314 l~kl~----~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~ 389 (403)
++.++ ......+++++..+.++...++.+++++......+..--..|... ...+-+.|+++=+..|.+.+..+-.
T Consensus 137 ~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~-~~~~~~~~Q~lEe~Ri~~lk~~l~~ 215 (236)
T cd07651 137 INSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNRE-WKAALDDFQDLEEERIQFLKSNCWT 215 (236)
T ss_pred HHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 122345778888888888888888888877666554444455443 3566666777777777777776665
Q ss_pred HHHHHH
Q 043025 390 WRTLLP 395 (403)
Q Consensus 390 We~~~~ 395 (403)
+.+.+.
T Consensus 216 ~a~~~s 221 (236)
T cd07651 216 FANNIS 221 (236)
T ss_pred HHHHHH
Confidence 555543
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation |
| >KOG3876 consensus Arfaptin and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.24 Score=43.86 Aligned_cols=204 Identities=12% Similarity=0.107 Sum_probs=129.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 043025 184 EESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQR 263 (403)
Q Consensus 184 ~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~ 263 (403)
...|.+|+..-+.+++....+..+.+.+..+..+...+...-..||.+|..|+.-+. .|..-|..-++++..++.
T Consensus 121 rTVD~ElEaQie~Lrd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadLs~K~~-elq~eft~nseTqr~l~k---- 195 (341)
T KOG3876|consen 121 RTVDLELEAQIEVLRDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADLSQKSP-ELQEEFTYNSETQRLLGK---- 195 (341)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH-HHHHHhCcCHHHHHHHhh----
Confidence 345888888777777777777677676666666777777777777777877776543 243333333333332221
Q ss_pred HHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHH
Q 043025 264 EAHQLLMNFEEPLKDYVRAVQS-IKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDS 342 (403)
Q Consensus 264 ~~~~~~~~~~e~l~~~~~~~~s-~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~ 342 (403)
.-..+...+.+|+.-+.. +...+.+--.-+.+|+.+.-+.+..+..++.+.-++.+-. -...++.+....+.-
T Consensus 196 ----ngetLl~alnfFIsSvnTl~nkTi~DTL~Ti~qyEsARiEyDayR~Dle~~~l~P~~~~--t~~~le~aq~~~q~h 269 (341)
T KOG3876|consen 196 ----NGETLLGALNFFISSVNTLVNKTIEDTLMTIKQYESARIEYDAYRTDLEELTLGPRDAL--TKNLLEGAQEKFQAH 269 (341)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHhcCCccccc--cccccHHHHHHHHHH
Confidence 122344455555543322 2233444444556777777777777777887753322210 012233334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 343 TRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 343 ~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
+++++.+...+..-+...+..|...+..-|.-|-..-..|+.-++...|..+.++.
T Consensus 270 kekYeKlrnDvaiKmkfLeENrIkVmh~QL~llhnAiaAYfsGNak~LE~tlkqf~ 325 (341)
T KOG3876|consen 270 KEKYEKLRNDVAIKMKFLEENRIKVMHKQLELLHNAIAAYFSGNAKQLEQTLKQFN 325 (341)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhc
Confidence 66677777778888888899999999999999988889999999999998887764
|
|
| >cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7 | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.26 Score=44.16 Aligned_cols=144 Identities=11% Similarity=0.142 Sum_probs=70.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 043025 238 CEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRA-VQSIKATIAERANAFRQQ-------CELAETMKL 309 (403)
Q Consensus 238 ~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~-~~s~k~~l~~R~~~~~~~-------~~~~~~l~~ 309 (403)
.+.+.|..++..+-...+.++.+....+..+...+..+|..|..- ....+.+=..-.++...+ ..+.+.+..
T Consensus 53 ~e~Gtl~~sw~~~~~e~E~~a~~H~~la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~ 132 (233)
T cd07649 53 QEEGTLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKALLE 132 (233)
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777777777777777777777776553 222221111111111111 111111111
Q ss_pred HHHhHH----Hhc----ccCcchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 310 KEINLD----KLM----LTRSDKVGEAEIEYKELKAE-------SEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHN 374 (403)
Q Consensus 310 k~~~l~----kl~----~~~~~ki~~l~~~i~~~~~~-------~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~ 374 (403)
+-..++ .++ ...++.+.++++...++..+ .+.++.+|+.=-..+-..+..++..|..-|+.+|..
T Consensus 133 ~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~ 212 (233)
T cd07649 133 RQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQ 212 (233)
T ss_pred HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100111 111 11223344444444444444 444444444444445566667777777777777777
Q ss_pred HHHHHHH
Q 043025 375 FSKGQAR 381 (403)
Q Consensus 375 ~a~~qi~ 381 (403)
|...-.+
T Consensus 213 y~~~~~~ 219 (233)
T cd07649 213 YTQLRHE 219 (233)
T ss_pred HHHHHHh
Confidence 7665543
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.31 Score=44.68 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 326 GEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 326 ~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
..+.+++...-+.++..+.+|..--..+...+..++..|...|+.+|..|+.......-..-...+++...++++
T Consensus 167 ~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~~ 241 (269)
T cd07673 167 KKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQIGQVHEEFINNMANT 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhC
Confidence 344444544555555566666666666778889999999999999999999966665566666777777666654
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.44 Score=42.95 Aligned_cols=167 Identities=10% Similarity=0.057 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHH-
Q 043025 220 ELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSI-KATIAERANAF- 297 (403)
Q Consensus 220 ~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~-k~~l~~R~~~~- 297 (403)
+.+..+..|+.-+...+..+.+++..++..+....+.++......+..+...+..+|..|..-...- |.+-..=.++.
T Consensus 37 ~YAK~L~kLa~k~~k~~~~~~Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~~~~k~qk 116 (239)
T cd07658 37 NYAKGLSKLSGKLSKASKSVSGTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVENEVDKAAK 116 (239)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443322222235777888888888888888877778777777888888876643221 11110101111
Q ss_pred -------------HHHHHHHHHHHHHHHhHH----------------HhcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 298 -------------RQQCELAETMKLKEINLD----------------KLMLTRSDKVGEAEIEYKELKAESEDSTRRFET 348 (403)
Q Consensus 298 -------------~~~~~~~~~l~~k~~~l~----------------kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~ 348 (403)
..|..+....++.....+ +.....+...+++...+.+++..++.+..++..
T Consensus 117 ~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~k~e~~y~~ 196 (239)
T cd07658 117 LLTDWRSEQIKVKKKLHGLARENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRLKAENEYYT 196 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222211111 001112334667777788888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 349 IVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIA 387 (403)
Q Consensus 349 i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~ 387 (403)
....+..--+.|... ..+.-..++++-+..+.+.+.++
T Consensus 197 ~~~~l~~~~~~~~~~-~~~~~~~~Q~~E~~rl~~~k~~l 234 (239)
T cd07658 197 CCVRLERLRLEWESA-LRKGLNQYESLEEERLQHLKHSL 234 (239)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554444444322 33444445555555555555554
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo |
| >KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.62 Score=49.09 Aligned_cols=193 Identities=17% Similarity=0.166 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 191 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE--GDALGKAFSELGMKSEALSVKLQREAHQL 268 (403)
Q Consensus 191 ~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e--~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (403)
..+...+..++..+..+.+...++......+..+...|+..+..+...- ...++..+..|+.++..++..........
T Consensus 24 ~~~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~~~~d~~~~~~~~~~~~~~l~~fs~~~~e~~~~~~~L~~q~ 103 (785)
T KOG0521|consen 24 DVFEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGKGLKDLFSLGQDEEVISETLQKFSKVLRELGTYHTELRSQL 103 (785)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666777777777777788887777663222 23456788888889998888887777777
Q ss_pred HHhhhHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHhcccC-cchHHHHHHHHHHHHHHHHHHHHH
Q 043025 269 LMNFEEPLKDYVR-AVQSIKATIAERA-NAFRQQCELAETMKLKEINLDKLMLTR-SDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 269 ~~~~~e~l~~~~~-~~~s~k~~l~~R~-~~~~~~~~~~~~l~~k~~~l~kl~~~~-~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
...+..++..++. .+.-+++. +.+- ++..+|..+.. +..++...+ ++-+.+ .+..+...+..
T Consensus 104 ~~~~~~~l~~f~k~dl~~v~~~-kk~f~ka~~~~d~a~~-------k~~~l~k~~~~~~~~e-------~~~~l~~~r~~ 168 (785)
T KOG0521|consen 104 AHTLSLPLSQFVKGDLHEVKEL-KKLFEKASEEYDLALV-------KYSRLPKKRRSKVKTE-------VEEELAAARRK 168 (785)
T ss_pred HHHHhhhHHHHHHHHHHHhhhh-hHHHHHHHhhHHHHHH-------HhhhhhhccccchhHH-------HHHHHHHHHHH
Confidence 7778877777654 34444443 1111 12334444333 333333222 222222 23355555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~ 398 (403)
|....-....-+.--+..+..++-+.+..|+..++.|+++--+.-.++-+.+.
T Consensus 169 f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g~~l~~~m~p~~~ 221 (785)
T KOG0521|consen 169 FQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQGEDLLSQMDPYIK 221 (785)
T ss_pred HHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhcccHhHHhhhhHHHH
Confidence 66666555555555666677888889999999999888887555554444443
|
|
| >cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.81 Score=41.75 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~ 393 (403)
+..+++++..+.+.+..++.+++++......+...-++|... ....-+.|+++=+..|.+.+.++-...++
T Consensus 167 ~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~-m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~ 237 (258)
T cd07655 167 PDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMED-MEQVFDKCQEFEEKRLDFFKEILLSYHRH 237 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888999998888888888887766665555555432 34444444444444455554444444433
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce |
| >cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.99 Score=40.96 Aligned_cols=71 Identities=8% Similarity=0.127 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLM---------------NEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIA 387 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~---------------~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~ 387 (403)
.++++++..+.+.....+.+++++..-.... ...+..++..|...++++|..|+.........+.
T Consensus 161 ~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~~~~~~~~~~~~~~ 240 (251)
T cd07653 161 ADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQAAEIERKVIPIIA 240 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4566666777766666666666655443333 3345566666666666777666666666555555
Q ss_pred HHHHHH
Q 043025 388 DAWRTL 393 (403)
Q Consensus 388 ~~We~~ 393 (403)
.....+
T Consensus 241 ~~~~~i 246 (251)
T cd07653 241 KCLDGI 246 (251)
T ss_pred HHHHhH
Confidence 554444
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l |
| >KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.78 E-value=1.5 Score=39.90 Aligned_cols=187 Identities=16% Similarity=0.214 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 043025 202 NHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGD-ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV 280 (403)
Q Consensus 202 ~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~ 280 (403)
.-+++|...+.++.+.+.+++..+.+||.+|..++..|++ .-+.+|..||+....+...-...+. .+..++..|.-|+
T Consensus 146 e~Ykglveh~~~ml~a~y~lsqt~k~FGd~F~~i~vhEpQq~AsEAF~~Fgd~HR~ieK~g~~~~k-~ikpmlsDL~tYl 224 (429)
T KOG3651|consen 146 EFYKGLVEHFGDMLQAQYKLSQTQKEFGDIFCDIAVHEPQQTASEAFSSFGDKHRMIEKKGSESAK-PIKPMLSDLQTYL 224 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHhccchhh-hhhHHHHHHHHHH
Confidence 3467788888888999999999999999999999998853 4556788887765544221111110 1111111222222
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHhc----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 281 RAVQSIKA---TIAERANAFRQQCELAETMKLKEINLDKLM----LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLM 353 (403)
Q Consensus 281 ~~~~s~k~---~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~----~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~ 353 (403)
.- ++.+ .+++-...--+|-.-+ |.-|+..=+... +.+-=+++.=.-++.-.-..-++++.+|..+...+
T Consensus 225 nk--aiPDTrLTikkYlDvKfeYLSYC--LKvKEMDDEE~~f~AlqEPLYRVeTGNYEYRliLRCRQeaRarF~kmR~DV 300 (429)
T KOG3651|consen 225 NK--AIPDTRLTIKKYLDVKFEYLSYC--LKVKEMDDEEVEFVALQEPLYRVETGNYEYRLILRCRQEARARFMKMRDDV 300 (429)
T ss_pred hc--cCCcchhhhHHhhhhhHHHHHHH--HhhhhccchhhceeeecCceeEeecCCeeeehhHHHHHHHHHHHHHHHHHH
Confidence 21 0111 0100000000111100 111111101100 00000111111223333445667888899988899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 354 NEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 354 ~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~ 393 (403)
+.-+.-.++....|+...|..++....++|+.+++.+.+.
T Consensus 301 leKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L~~~ 340 (429)
T KOG3651|consen 301 LEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEILKER 340 (429)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9888889999999999999999999999999999987653
|
|
| >cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.8 Score=39.30 Aligned_cols=150 Identities=11% Similarity=0.127 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--
Q 043025 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVR--AVQSIKATIAERANAFRQQCELAETMKLKEINLDK-- 316 (403)
Q Consensus 241 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~--~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~k-- 316 (403)
+.|..++..+-...+.++......+..+.....+.++.... |..++..-++.|..+......++..+.++-.++++
T Consensus 60 Gtl~~aw~~i~~etE~ia~~H~~la~~L~~e~~e~~r~~qk~~~~k~~~~~~ke~K~~e~~~~KaQK~~~k~~k~v~~sK 139 (258)
T cd07680 60 GSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAK 139 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45666666666667777776666666666666666643221 22222222333333333333333322221111111
Q ss_pred -------------------hc---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 317 -------------------LM---LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHN 374 (403)
Q Consensus 317 -------------------l~---~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~ 374 (403)
.. ...++.+++++..+++....++.+++++......+...-++|... ...+-+.+++
T Consensus 140 k~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~-m~~vfd~~Q~ 218 (258)
T cd07680 140 KAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMEN-MEQVFEQCQQ 218 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHH
Confidence 11 123567888889999999999999999988877777766666543 3444455555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043025 375 FSKGQARLASSIADAWR 391 (403)
Q Consensus 375 ~a~~qi~~~~~~~~~We 391 (403)
+=+..|.|.++++-..-
T Consensus 219 ~Ee~Ri~flk~~l~~~~ 235 (258)
T cd07680 219 FEEKRLVFLKEVLLDIK 235 (258)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55556666666554433
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog |
| >cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins | Back alignment and domain information |
|---|
Probab=95.39 E-value=2 Score=38.89 Aligned_cols=67 Identities=10% Similarity=0.126 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 330 IEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQ----KTLDMGIAFHNFSKGQARLASSIADAWRTLLPK 396 (403)
Q Consensus 330 ~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~----r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~ 396 (403)
.+++++...+......++...+.-..-+..+... ...++..+|..|=.........+.+.|..+...
T Consensus 161 ~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~~~~~ 231 (251)
T cd07653 161 ADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQAAEI 231 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777666666666666443 345666676666666666666666666555443
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l |
| >cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.7 Score=37.53 Aligned_cols=129 Identities=16% Similarity=0.195 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccC
Q 043025 242 ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTR 321 (403)
Q Consensus 242 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~ 321 (403)
.+..++..+....+.++......+..+...+.+++..+...... .|.....+...+.+.+...-..+.+
T Consensus 54 t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~~~~~------~rk~~~~~~~~~~k~~~~~~~~~~k----- 122 (191)
T cd07610 54 SLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKEDKEQ------ARKKELAEGEKLKKKLQELWAKLAK----- 122 (191)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 56666777766677777666666665555555665555554332 1444444455554444443333333
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSI 386 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~ 386 (403)
+..+++.....+......+|...-.....-+......+...++.++..|+.........+
T Consensus 123 -----k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~q~~~e~r~~~~~~~l~~~~~~~~~~~~~~ 182 (191)
T cd07610 123 -----KADEEYREQVEKLNPAQSEYEEEKLNKIQAEQEREEERLEILKDNLKNYINAIKEIPQKI 182 (191)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 233444444444444555554432222222444445556666666666665554444433
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein. |
| >KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.94 E-value=3.3 Score=38.81 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=44.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 043025 321 RSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH---NFSKGQARLASSIADAW 390 (403)
Q Consensus 321 ~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~---~~a~~qi~~~~~~~~~W 390 (403)
.++.+.++++.+++++++++..+.+++. ...||.++......+|...|. .|-...+.|.+.++-.-
T Consensus 175 speq~kKlqdrveK~k~evqktkekYek----tl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v 243 (472)
T KOG2856|consen 175 SPEQLKKLQDRVEKCKQEVQKTKEKYEK----TLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLKV 243 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999988876 456666666666666666554 34444455555544433
|
|
| >cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis | Back alignment and domain information |
|---|
Probab=94.70 E-value=2.8 Score=36.84 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 353 MNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIAD 388 (403)
Q Consensus 353 ~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~ 388 (403)
+..|-.|| -.|-++|.-+++.++.-..+...
T Consensus 182 LiEER~Rf-----c~Fvs~l~pVl~~e~~ml~E~~h 212 (231)
T cd07643 182 LIEERGRF-----CTFVSFLKPVLDEEISMLGEVTH 212 (231)
T ss_pred HHHHHHHH-----HHHHHHHhHHHHHHHHHHhhHHH
Confidence 44555555 56778888888888776665543
|
The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate |
| >cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins | Back alignment and domain information |
|---|
Probab=94.45 E-value=3.2 Score=36.42 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 189 EYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAA 232 (403)
Q Consensus 189 ~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~ 232 (403)
++..+...+..+...+..+.+....+.....++|..+..||..-
T Consensus 12 ~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e 55 (218)
T cd07596 12 YILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCE 55 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33444445555555555555555555555555555555555443
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2 | Back alignment and domain information |
|---|
Probab=93.94 E-value=4.6 Score=36.36 Aligned_cols=73 Identities=10% Similarity=0.086 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLP 395 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~ 395 (403)
++.+++++..++++...++.++.+|......+..--++|...- ...-+.|.+.=...|.|.+.++=..-+.+.
T Consensus 153 ~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~-~~~c~~fq~lEeeRi~f~k~~lw~~~n~~s 225 (240)
T cd07672 153 VKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEH-VKACEFFEKQECERINFFRNAVWTHVNQLS 225 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3456778888888888888888888877665554445555432 244444444466667777766655555443
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca |
| >cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3) | Back alignment and domain information |
|---|
Probab=93.02 E-value=6.8 Score=35.55 Aligned_cols=152 Identities=10% Similarity=0.091 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHH------HHHHHHHH----HHHHHHHHHH
Q 043025 242 ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV------RAVQSIK------ATIAERAN----AFRQQCELAE 305 (403)
Q Consensus 242 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~------~~~~s~k------~~l~~R~~----~~~~~~~~~~ 305 (403)
.|..++..+-...+.++......+..+...+.+++...- .++..++ +.+..-.+ .+........
T Consensus 61 TL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~~QKe~~hk~~~~g~ke~K~~e~~f~kaqK~w~k~~kk~~~sKk 140 (258)
T cd07681 61 TLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRAWQKEAFHKQMIGGFRESKEAEEGFRKAQKPWVKKLKEVESSKK 140 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 566777777777777777777767766666677775521 1221222 22211111 1112222222
Q ss_pred HHHHH--HHhHHHh-------c-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 306 TMKLK--EINLDKL-------M-LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 306 ~l~~k--~~~l~kl-------~-~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
..... ++.++.. . ...++.+.+++..++++..+++.++.++......+..--++|... ....-+.++++
T Consensus 141 ~Y~~~ck~e~~a~~~e~~~k~~~~~~~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~-m~~~~d~~Q~~ 219 (258)
T cd07681 141 GYHAARKDERTAQTRETHAKADSTVSQEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMED-MEQAFEICQEA 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHH
Confidence 22211 1222211 1 223567788888888888888888888887766665555555433 23334455555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043025 376 SKGQARLASSIADAWRTLL 394 (403)
Q Consensus 376 a~~qi~~~~~~~~~We~~~ 394 (403)
=+..|.|.+.++......+
T Consensus 220 EeeRi~flK~~L~~~~~~l 238 (258)
T cd07681 220 ERKRLCFFKEMLLDLHQHL 238 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5556777776666655554
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to |
| >cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins | Back alignment and domain information |
|---|
Probab=92.84 E-value=7 Score=35.18 Aligned_cols=95 Identities=8% Similarity=0.106 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhHHHhc-ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 299 QQCELAETMKLKEINLDKLM-LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSK 377 (403)
Q Consensus 299 ~~~~~~~~l~~k~~~l~kl~-~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~ 377 (403)
.|...+..++..+...++.. +..+..+++++..+.+....++.++++|......+..--..|... ....-+.|+++=+
T Consensus 128 ~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~-~~~~~~~~Q~lEe 206 (239)
T cd07647 128 SYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESE-HATACQVFQNMEE 206 (239)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34444444443333333333 223456777778888877777777777766544433333334332 3334455555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043025 378 GQARLASSIADAWRTLL 394 (403)
Q Consensus 378 ~qi~~~~~~~~~We~~~ 394 (403)
..|.+.+..+-...+++
T Consensus 207 ~Ri~~lk~~l~~y~n~i 223 (239)
T cd07647 207 ERIKFLRNALWVHCNLG 223 (239)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 55666555554444443
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases | Back alignment and domain information |
|---|
Probab=92.30 E-value=8.2 Score=34.68 Aligned_cols=84 Identities=8% Similarity=0.035 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHhc---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 297 FRQQCELAETMKLKEINLDKLM---LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFH 373 (403)
Q Consensus 297 ~~~~~~~~~~l~~k~~~l~kl~---~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~ 373 (403)
...|+.+....+..+.+.++.- +....+++++++.+.+...++..+++++-..-......-..|...-..++-+.|+
T Consensus 132 Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll~~lQ 211 (237)
T cd07657 132 KSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLLNSLQ 211 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344444444444444444432 1123467888888888888888899998877777766666666555555555555
Q ss_pred HHHHHHH
Q 043025 374 NFSKGQA 380 (403)
Q Consensus 374 ~~a~~qi 380 (403)
++-+..|
T Consensus 212 ~l~E~ri 218 (237)
T cd07657 212 SLQEEFI 218 (237)
T ss_pred HHHHHHH
Confidence 5444333
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit |
| >cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins | Back alignment and domain information |
|---|
Probab=92.05 E-value=8.7 Score=34.45 Aligned_cols=55 Identities=5% Similarity=0.136 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQ 379 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~q 379 (403)
+...++++.....+++..+..|..--..+...+..++..|..-|+..|..|+..-
T Consensus 166 ~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~ 220 (236)
T cd07651 166 INSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCWTFANNI 220 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777777777777777776677888999999999999999998888653
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation |
| >KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.92 E-value=11 Score=35.19 Aligned_cols=197 Identities=14% Similarity=0.134 Sum_probs=117.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|.++...-+..+.+....-.|.+.+....++...++..-..||..+..=+....+.-+..+..+|.+.--.+.-
T Consensus 48 SDaeLDaklelf~Si~~T~l~L~kiId~Yq~rl~~lSqeenvlGkfLkeqgkrdkT~agkmm~atgkal~fssqq----- 122 (436)
T KOG3891|consen 48 SDAELDAKLELFHSIQRTCLDLLKIIDLYQKRLCDLSQEENVLGKFLKEQGKRDKTEAGKMMIATGKALCFSSQQ----- 122 (436)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHhHHhhhhHHH-----
Confidence 356665555666666666667788888888888888888888998888777665444444566666554333221
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIK-----A---TIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKA 337 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k-----~---~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~ 337 (403)
...+..||-.+..-+..++ + .+++-+++-.+|..+.-.+.+-- +.| +++--.. -....++..
T Consensus 123 ---rla~r~pl~r~~~ev~vF~~RAI~Dt~qTi~~meq~RTEYRgaLlWMK~~S---qEL---DPdt~k~-meKFRkaQt 192 (436)
T KOG3891|consen 123 ---RLALRIPLSRFYQEVSVFRERAISDTSQTINRMEQCRTEYRGALLWMKDVS---QEL---DPDTDKQ-MEKFRKAQT 192 (436)
T ss_pred ---HHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhH---hhc---CcchhhH-HHHHHHHHH
Confidence 1123334444333322211 1 12222222223333332222211 111 1211111 123344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 338 ESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 338 ~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
.+..++..|+...-.+..-+.-.-..|...+..+|..|......|+++....++.+-..+
T Consensus 193 ~Vr~aK~nfDklkmD~~QKVDLL~AsRcNllSh~Lt~YqteL~~f~~Kta~tf~ti~ea~ 252 (436)
T KOG3891|consen 193 QVRSAKENFDKLKMDVCQKVDLLGASRCNLLSHVLTTYQTELLEFWSKTARTFETIHEAC 252 (436)
T ss_pred HHHHHHhccchhhhHHHHHHhHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677777888888877888888888889999999999999999999999888888876554
|
|
| >cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature | Back alignment and domain information |
|---|
Probab=91.22 E-value=8.3 Score=32.60 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 191 EKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLL 235 (403)
Q Consensus 191 ~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l 235 (403)
..++..++.+....+.+......+......++..+.++|..+...
T Consensus 3 ~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 47 (194)
T cd07307 3 DELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDL 47 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 345556666666666666666666777777777777777666544
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F- |
| >cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1 | Back alignment and domain information |
|---|
Probab=91.17 E-value=9.7 Score=33.28 Aligned_cols=117 Identities=11% Similarity=0.120 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 199 ELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-----GDALGKAFSELGMKSEALSVKLQREAHQLLMNFE 273 (403)
Q Consensus 199 ~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (403)
.+...+.+|........+....+..+-.-+..++..++..- +..|+.++-.+++....+..............+.
T Consensus 17 qfnP~lrnLv~lGk~Y~KA~~a~~~A~~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~Ell 96 (226)
T cd07645 17 QFNPGLRNLINLGKNYEKAVNAMVLAGKAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDSLEENFKKFHREII 96 (226)
T ss_pred hcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555555555432 2467777777777776666544444443333333
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Q 043025 274 EPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM 318 (403)
Q Consensus 274 e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~ 318 (403)
.+|..=.. .+.-+.. .+.....++..-.+.|++....|.|++
T Consensus 97 ~~LE~k~elD~kyi~a---~~Kkyq~E~k~k~dsLeK~~seLKK~R 139 (226)
T cd07645 97 AELERKTDLDVKYMTA---TLKRYQTEHKNKLDSLEKSQADLKKIR 139 (226)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332221 1111122 223356677777778888888888887
|
The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of |
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
Probab=90.51 E-value=8.9 Score=31.70 Aligned_cols=36 Identities=14% Similarity=0.381 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q 043025 282 AVQSIKATIAERANAFRQQCELAETMKLKEINLDKL 317 (403)
Q Consensus 282 ~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl 317 (403)
.+..+-++|..|..-....+.+...+.++....+.+
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l 71 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERL 71 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334444445555544444455554444444444443
|
pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions. |
| >cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases | Back alignment and domain information |
|---|
Probab=90.00 E-value=14 Score=33.19 Aligned_cols=69 Identities=9% Similarity=0.157 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 331 EYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 331 ~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
+++++......+..++...-+.=..-|..+.......+...|=+..+..-...+..+..|..++..+-.
T Consensus 162 ~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l~~~~~ 230 (237)
T cd07657 162 KLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKILQEYLR 230 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444444555566666666666666666666777777777777777655443
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit |
| >PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family | Back alignment and domain information |
|---|
Probab=89.80 E-value=14 Score=32.78 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhh
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGE------SLSDFGKAAKLLGACE 239 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~------~~~~l~~~~~~l~~~e 239 (403)
|.|+++-.--..|...+..+........+....++. .-.++|.++..++...
T Consensus 10 P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~ 67 (219)
T PF08397_consen 10 PAWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNSRGSKELGDALMQISEVH 67 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH
Confidence 556666666666667776666666665555555542 2456777777776654
|
In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A. |
| >PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking | Back alignment and domain information |
|---|
Probab=89.74 E-value=14 Score=32.87 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKA 231 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~ 231 (403)
-.++..+...+..+...+..+.+.-..+.....+++..+..||..
T Consensus 30 ~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~ 74 (236)
T PF09325_consen 30 KDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKS 74 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 556777888888888888888888888888888887777765543
|
This is the C-terminal dimerisation domain []. |
| >cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase | Back alignment and domain information |
|---|
Probab=89.15 E-value=16 Score=32.51 Aligned_cols=87 Identities=8% Similarity=0.001 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 296 AFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 296 ~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
+-..|..+.+..+..+.+.++. ..+...+++.....++..++..+.+++-.--..+..=-.+|...-...+.+.|++.
T Consensus 136 ~Kk~Y~~~c~~~e~AR~K~eka--s~~K~~~K~~EKy~~m~~KL~~~hN~YlL~I~~An~~kdkyy~q~lP~LLd~lQ~l 213 (237)
T cd07685 136 LKSQYRSLAKDSAQAKRKYQEA--SKDKDRDKAKEKYVKSLWKLYALHNEYVLAVRAAQLHHQHHYQRILPGLLESLQSL 213 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3445666666666666555553 33345667777777777778888888866544444434444444445555555555
Q ss_pred HHHHHHHHH
Q 043025 376 SKGQARLAS 384 (403)
Q Consensus 376 a~~qi~~~~ 384 (403)
-+..+..-+
T Consensus 214 nE~~v~~Ln 222 (237)
T cd07685 214 HEEMVLILK 222 (237)
T ss_pred HHHHHHHHH
Confidence 444444333
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def |
| >cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17 | Back alignment and domain information |
|---|
Probab=89.04 E-value=17 Score=32.94 Aligned_cols=95 Identities=11% Similarity=0.161 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhHHHhccc---CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH
Q 043025 299 QQCELAETMKLKEINLDKLMLT---RSDKVGEAEIEYKELKAESEDSTRRFETIVR---------------LMNEEIVRF 360 (403)
Q Consensus 299 ~~~~~~~~l~~k~~~l~kl~~~---~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~---------------~~~~El~~f 360 (403)
.|..++...++.....++..+. ....++++++.....++..+.+++++..--. .+...+..+
T Consensus 136 ~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~l 215 (253)
T cd07676 136 RFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEM 215 (253)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4444444444444333343321 3345567777777777777777766433222 234555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 361 QEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 361 ~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~ 393 (403)
+..|...|+.+|..|+...-.....+....+.+
T Consensus 216 ee~Ri~~l~e~l~~~~~~e~~~~~~i~~cl~~i 248 (253)
T cd07676 216 EERRIGRVGESMKTYAEVDRQVIPIIGKCLDGI 248 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 777777777777777766666555555544443
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53 | Back alignment and domain information |
|---|
Probab=88.90 E-value=16 Score=32.27 Aligned_cols=110 Identities=13% Similarity=0.110 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 043025 203 HLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-----GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLK 277 (403)
Q Consensus 203 ~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~ 277 (403)
.+.++.....++.+....+..+-.-|..+|..++..- +..|+.++-.++.....+....+.........+..+|.
T Consensus 23 ~lrnlv~~G~~Y~kal~a~~~a~~~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~eli~pLE 102 (232)
T cd07646 23 SLRNFIAMGKNYEKALASVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQLE 102 (232)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555566555432 24677777777777766655555555554444554443
Q ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Q 043025 278 DYV----RAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM 318 (403)
Q Consensus 278 ~~~----~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~ 318 (403)
.=+ .++.+ -......++....+.+++-+..|-|++
T Consensus 103 ~k~E~D~k~i~a------~~Kky~~e~k~k~~sleK~qseLKKlR 141 (232)
T cd07646 103 QKVELDSRYLTA------ALKKYQTEHRSKGESLEKCQAELKKLR 141 (232)
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 23222 122233444444455555555555554
|
The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP |
| >KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.37 E-value=33 Score=35.35 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
++.++..++..+...++.++++|+.=...+...+...+..+...|+..|..|+..--.-+-......+.+...++.+
T Consensus 147 ~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~~fQ~~Ee~rl~~lk~~l~~~~~~is~~~~~~~q~~E~~k~~le~~ 223 (611)
T KOG2398|consen 147 KIKEAREEYRSLVAKLEKVRKDWEQEMTDLCLKFQEIEESRLSFLKEELWLFANQISESCVKIDQVMEEFKLTLESC 223 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhccC
Confidence 45555666666777777777777766666777788888888888888888888888777777777777777666543
|
|
| >cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2) | Back alignment and domain information |
|---|
Probab=88.24 E-value=20 Score=32.54 Aligned_cols=153 Identities=13% Similarity=0.130 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHHHHHHH----------HHHH-------HH
Q 043025 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV------RAVQSIKATIA----------ERAN-------AF 297 (403)
Q Consensus 241 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~------~~~~s~k~~l~----------~R~~-------~~ 297 (403)
+.|..++..+-...+.++.+.......+.....+.++..- .++..+|+.-. --.. +-
T Consensus 60 GTl~~aw~~~~~Eae~~s~~H~~l~~~L~~e~~e~ir~wQKe~~hk~~~~~~Ke~k~~e~~f~KaQKpw~k~~kkv~~aK 139 (258)
T cd07679 60 GTVEKAWCALMSEAEKVSELHLEVKASLMNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAK 139 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3566677766666777777666666665555555554421 22333333211 0001 11
Q ss_pred HHHHHHHHHHHHHHHhHHHhc---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 298 RQQCELAETMKLKEINLDKLM---LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHN 374 (403)
Q Consensus 298 ~~~~~~~~~l~~k~~~l~kl~---~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~ 374 (403)
..|..++........+..... ...++.+.++++.+++.+++++.++..++..-..+..--++|.... ...-+.+++
T Consensus 140 k~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m-~~~fe~~Q~ 218 (258)
T cd07679 140 KAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENM-EQVFEQCQQ 218 (258)
T ss_pred HHHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHH
Confidence 122222222222211111111 1245678888888999999988888888776555555555554432 222334455
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 043025 375 FSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 375 ~a~~qi~~~~~~~~~We~~~ 394 (403)
+=...|.|.++++-..-+.+
T Consensus 219 ~E~eRi~F~K~~l~~~~~~l 238 (258)
T cd07679 219 FEEKRLRFFREVLLEVQKHL 238 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHc
Confidence 55556666666655444433
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su |
| >PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment | Back alignment and domain information |
|---|
Probab=87.16 E-value=20 Score=31.37 Aligned_cols=45 Identities=20% Similarity=0.379 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHR-------ELGESLSDFGKAA 232 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~-------~l~~~~~~l~~~~ 232 (403)
..|......+..+...++........+..... .++.++.+++..+
T Consensus 33 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 84 (229)
T PF03114_consen 33 EKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEF 84 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccc
Confidence 34444444455555444444444444444444 5555555554443
|
Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A .... |
| >cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=86.66 E-value=24 Score=31.82 Aligned_cols=73 Identities=4% Similarity=0.097 Sum_probs=44.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 321 RSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 321 ~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~ 394 (403)
.+..+++++..+.+..+.++.++++|......+..=-++|... ....-+.++++=+..|.|.+.++=..-+.+
T Consensus 151 t~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~-~~~~~~~~Q~lEeeRi~f~K~~lw~~~n~~ 223 (242)
T cd07671 151 NPKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETE-HILTCEVFQLQEDDRITILRNALWVHCNHF 223 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3455778888888888888888888876655555555555433 233344455555555666666654444443
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR |
| >cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins | Back alignment and domain information |
|---|
Probab=85.63 E-value=21 Score=30.29 Aligned_cols=145 Identities=15% Similarity=0.174 Sum_probs=78.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHH
Q 043025 240 GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRA--VQSIKATIAERANAF-RQQCELAETMKLKEINLDK 316 (403)
Q Consensus 240 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~--~~s~k~~l~~R~~~~-~~~~~~~~~l~~k~~~l~k 316 (403)
+..|+.+-..+|.+...+-.-.......+..++.+||+.++.- +.-.+. |..|-..+ ++.+.-.....+++.+...
T Consensus 56 ~~~LsrAa~~yG~a~~~mEkEre~l~r~l~~QV~ePLRaMv~GaPLEDARh-L~qrYdRmRQeaE~qa~eV~RRq~k~re 134 (209)
T cd07607 56 NTALSRASLHYGSARNQMEKERENLHRVLSEQVAEPLRAMVYGAPLEDARH-LKQRYDRLRQEVEAQAAEVARRRSKDKE 134 (209)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3467777777777776665555566667777888888887652 222233 22332222 2222222222222222111
Q ss_pred hcccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 317 LMLTRSD---KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 317 l~~~~~~---ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~ 393 (403)
. ++.++ |+..++..+.++ +.....+.+..-.-+.-.+.....---.-|..+++..-.||+..+.++..+
T Consensus 135 s-~~~~e~~~KL~~AE~Kl~el-------ks~M~~LGKEA~aAm~aVEaQQQrlTlqRL~amVeaEr~Yhqrv~~ILd~l 206 (209)
T cd07607 135 S-GGNPDNAAKLQSAESKLDEL-------KSSMNTLGKEATSAMLAVEDQQQQVTLQRLLAMVEAERAYHQRAADILDKL 206 (209)
T ss_pred c-CCChHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 22333 344444444444 444444444444444444444444455668889999999999999888765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i |
| >COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.34 E-value=39 Score=33.07 Aligned_cols=51 Identities=8% Similarity=0.087 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFS 376 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a 376 (403)
+-.+++.|+..+=+++++...+..-...+.+++..|... ..+|+-.+++-+
T Consensus 553 ~l~~eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v~~~-~~~fk~~IQssl 603 (622)
T COG5185 553 ILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDI-TSKFKINIQSSL 603 (622)
T ss_pred HhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHhhH
Confidence 333444444444444444444444444455555555443 244444444333
|
|
| >cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2 | Back alignment and domain information |
|---|
Probab=83.90 E-value=28 Score=30.21 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 043025 200 LENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-----GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEE 274 (403)
Q Consensus 200 le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 274 (403)
+...+.+|........+....++.+-.-+..++..++..- ...|+.++-.++++...+..-...........+.-
T Consensus 18 FNP~lrnlv~lGk~Y~kA~~a~t~aa~~Yf~Al~KiGe~A~~s~~s~~LG~vLmqisev~r~i~~~le~~lk~FH~ell~ 97 (215)
T cd07644 18 FNPALENLVYLGNNYLRAFHALSEAAEVYFSAIAKIGEQALQSLTSQSLGEILIQMSETQRKLSADLEVVFQTFHVDLLQ 97 (215)
T ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555565555432 23577777677766666655444333332222222
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Q 043025 275 PLKDY----VRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM 318 (403)
Q Consensus 275 ~l~~~----~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~ 318 (403)
+|..= ..|+.+ .+.....++..-.+.+++....+.+++
T Consensus 98 ~LEkk~elD~kyi~~------s~KkYq~E~r~k~dsleK~~selkk~r 139 (215)
T cd07644 98 HMDKNTKLDMQFIED------SRRVYELEYRHRAANLEKCMSELWRME 139 (215)
T ss_pred HHHHHHHHhHHHHHH------HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 22211 122221 222334455555555666655555555
|
The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=83.74 E-value=63 Score=34.23 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 043025 279 YVRAVQSIKATIAERANAF 297 (403)
Q Consensus 279 ~~~~~~s~k~~l~~R~~~~ 297 (403)
|+.+...+++.+..|...+
T Consensus 552 Yi~~~~~ar~ei~~rv~~L 570 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVKLL 570 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555566666665544
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like | Back alignment and domain information |
|---|
Probab=83.10 E-value=36 Score=30.86 Aligned_cols=96 Identities=9% Similarity=0.210 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcc---cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HH
Q 043025 293 RANAFRQQCELAETMKLKEINLDKLML---TRSDKVGEAEIEYKELKAESEDSTRRFETIVRL---------------MN 354 (403)
Q Consensus 293 R~~~~~~~~~~~~~l~~k~~~l~kl~~---~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~---------------~~ 354 (403)
-.+.-..|..++...++.+...++... .....++++++....-.+..+.+++++..--.. +.
T Consensus 129 leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vf 208 (252)
T cd07675 129 MDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIY 208 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 333444455555554444444444331 122335566666666666666666655544333 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 355 EEIVRFQEQKTLDMGIAFHNFSKGQARLASSIAD 388 (403)
Q Consensus 355 ~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~ 388 (403)
..+..++..|...|+.++..+++......-.+..
T Consensus 209 d~lQ~leE~Ri~~l~e~~~~~~~~E~~v~~~i~~ 242 (252)
T cd07675 209 KQLQEMDERRTVKLSECYRGFADSERKVIPIISK 242 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5566666666666666666666665544444333
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase | Back alignment and domain information |
|---|
Probab=82.98 E-value=34 Score=30.58 Aligned_cols=87 Identities=5% Similarity=0.003 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 296 AFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 296 ~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
+-..|..+++..+.++.+.++.-. +..+.++++..+.+...++..+++++-..-.....=-.+|...-...+.+.|+++
T Consensus 132 ~K~~Y~~~~~~~e~ar~K~~~a~~-~gk~~~Ka~~k~~~~~~km~~~kN~Yll~i~~aN~~k~~Yy~~~lP~lLd~lQ~l 210 (234)
T cd07686 132 LKCSYRQLTKEVNSAKEKYKDAVA-KGKETEKARERYDKATMKLHMLHNQYVLAVKGAQLHQHQYYDFTLPLLLDSLQKM 210 (234)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666555554321 1124677888999999999999999877666666666666655566666666666
Q ss_pred HHHHHHHH
Q 043025 376 SKGQARLA 383 (403)
Q Consensus 376 a~~qi~~~ 383 (403)
-+..|..-
T Consensus 211 ~E~rv~~l 218 (234)
T cd07686 211 QEEMIKAL 218 (234)
T ss_pred HHHHHHHH
Confidence 55555443
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran |
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
Probab=82.50 E-value=1e+02 Score=35.66 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKA 231 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~ 231 (403)
||++.....+.....++..|..+.........+...+...+..|...
T Consensus 834 ~pe~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 880 (1486)
T PRK04863 834 DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRL 880 (1486)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56788888889988888888887766655555544444444444333
|
|
| >TIGR03545 conserved hypothetical protein TIGR03545 | Back alignment and domain information |
|---|
Probab=80.95 E-value=32 Score=35.14 Aligned_cols=51 Identities=8% Similarity=0.131 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNF 375 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~ 375 (403)
+.+++.++....+.++.+++++..-.+.+...+..+.+....|+.+....|
T Consensus 221 ~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~ 271 (555)
T TIGR03545 221 FDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKY 271 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHh
Confidence 344445555556666666666666666666666666666666666665443
|
This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair. |
| >cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins | Back alignment and domain information |
|---|
Probab=80.41 E-value=43 Score=30.03 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQAR 381 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~ 381 (403)
+..+++++...-..++.++.+|..--..+...+..++..|..-|+..|-.|+..--.
T Consensus 169 ~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~y~n~is~ 225 (239)
T cd07647 169 AEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEERIKFLRNALWVHCNLGSM 225 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 445567777777777788888888777788899999999999999999999876543
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 403 | ||||
| 3iq2_A | 138 | Human Sorting Nexin 7, Phox Homology (Px) Domain Le | 1e-21 | ||
| 2i4k_A | 128 | Solution Structure Of The Px Domain Of Sorting Nexi | 4e-21 | ||
| 2csk_A | 146 | Solution Structure Of Px Domain From Human Snx12 Le | 7e-18 | ||
| 4akv_A | 386 | Crystal Structure Of Human Sorting Nexin 33 (Snx33) | 9e-14 | ||
| 1ocs_A | 162 | Crystal Structure Of The Yeast Px-Doamin Protein Gr | 2e-11 | ||
| 3hpc_X | 161 | Crystal Structure Of Snx5-Px Domain In P21 Space Gr | 2e-10 | ||
| 3hpb_A | 161 | Crystal Structure Of Snx5-Px Domain In P212121 Spac | 2e-10 | ||
| 3dyu_A | 366 | Crystal Structure Of Snx9px-Bar (230-595), H32 Leng | 3e-10 | ||
| 2raj_A | 392 | So4 Bound Px-Bar Membrane Remodeling Unit Of Sortin | 3e-10 | ||
| 3dyt_A | 366 | Crystal Structure Of Snx9px-Bar (230-595), C2221 Le | 1e-08 | ||
| 2rai_A | 392 | The Px-Bar Membrane Remodeling Unit Of Sorting Nexi | 1e-08 | ||
| 1xte_A | 154 | Crystal Structure Of Cisk-Px Domain Length = 154 | 3e-05 | ||
| 1xtn_A | 120 | Crystal Structure Of Cisk-Px Domain With Sulfates L | 6e-05 |
| >pdb|3IQ2|A Chain A, Human Sorting Nexin 7, Phox Homology (Px) Domain Length = 138 | Back alignment and structure |
|
| >pdb|2I4K|A Chain A, Solution Structure Of The Px Domain Of Sorting Nexin 1 Length = 128 | Back alignment and structure |
|
| >pdb|2CSK|A Chain A, Solution Structure Of Px Domain From Human Snx12 Length = 146 | Back alignment and structure |
|
| >pdb|4AKV|A Chain A, Crystal Structure Of Human Sorting Nexin 33 (Snx33) Length = 386 | Back alignment and structure |
|
| >pdb|1OCS|A Chain A, Crystal Structure Of The Yeast Px-Doamin Protein Grd19p (Sorting Nexin3) Complexed To Phosphatidylinosytol-3-Phosphate. Length = 162 | Back alignment and structure |
|
| >pdb|3HPC|X Chain X, Crystal Structure Of Snx5-Px Domain In P21 Space Group Length = 161 | Back alignment and structure |
|
| >pdb|3HPB|A Chain A, Crystal Structure Of Snx5-Px Domain In P212121 Space Group Length = 161 | Back alignment and structure |
|
| >pdb|3DYU|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), H32 Length = 366 | Back alignment and structure |
|
| >pdb|2RAJ|A Chain A, So4 Bound Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9 Length = 392 | Back alignment and structure |
|
| >pdb|3DYT|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), C2221 Length = 366 | Back alignment and structure |
|
| >pdb|2RAI|A Chain A, The Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9 Length = 392 | Back alignment and structure |
|
| >pdb|1XTE|A Chain A, Crystal Structure Of Cisk-Px Domain Length = 154 | Back alignment and structure |
|
| >pdb|1XTN|A Chain A, Crystal Structure Of Cisk-Px Domain With Sulfates Length = 120 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Length = 386 | Back alignment and structure |
|---|
Score = 229 bits (584), Expect = 8e-72
Identities = 81/400 (20%), Positives = 150/400 (37%), Gaps = 36/400 (9%)
Query: 2 INTEQQRSASGSSQSPRSPSSQPYLSVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQG 59
+ + S + P+ ++ + SV DP K G+++YISY++
Sbjct: 18 LYFQSMYSIEMGPRGPQWKANPHPFACSVEDPTKQTKFKGIKSYISYKLTPTHA------ 71
Query: 60 PEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNR 119
V RRY F WL +RL K+ I +P LPEK A RF +FIE R++ L L+++
Sbjct: 72 -ASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQATG--RFEEDFIEKRKRRLILWMDH 128
Query: 120 IASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGK 179
+ SHP L Q E + FL ++ ++ + + A + F+ +
Sbjct: 129 MTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEKDEMVGASFLLTFQIPTEHQD--LQDV 186
Query: 180 EKPVEESNPEYEKLKHYIFELENHLAE-AQKHAYRLVKRHRELGESLSDFGKAAKLLGAC 238
E V+ +K+ + +L +E +KH K ++LG + + ++
Sbjct: 187 EDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPF 246
Query: 239 EGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFR 298
+AL A S G EA+ + L + L Y + + I + AF
Sbjct: 247 CSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFA 306
Query: 299 QQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIV 358
+ + E + ++ E++ RR + + E+
Sbjct: 307 KV----------------------KESQRMSDEGRMVQDEADGIRRRCRVVGFALQAEMN 344
Query: 359 RFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLE 398
F +++ LD N+ + Q + L +
Sbjct: 345 HFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRMYD 384
|
| >3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Length = 366 | Back alignment and structure |
|---|
Score = 226 bits (576), Expect = 7e-71
Identities = 75/392 (19%), Positives = 139/392 (35%), Gaps = 39/392 (9%)
Query: 13 SSQSPRSPSSQPYLSVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSD 70
P V DP K G+++YI Y++ V RY
Sbjct: 8 GDYGPMWVYPTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTNTNRS-------VNHRYKH 60
Query: 71 FVWLRDRLFEKY-KGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQS 129
F WL +RL K+ I IP LP+K RF EFI+MR + L ++ R+ HP + +S
Sbjct: 61 FDWLYERLLVKFGSAIPIPSLPDKQVTG--RFEEEFIKMRMERLQAWMTRMCRHPVISES 118
Query: 130 EDLKTFLQADEETMERLRSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGK-EKPVEESNP 188
E + FL +E + + ++ + IF ++ + D+ L + E+ E
Sbjct: 119 EVFQQFLNFRDEKEWKTGKRKA---ERDELAGVMIFSTMEPEAPDLDLVEIEQKCEAVGK 175
Query: 189 EYEKLKHYIFELENHLAE-AQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAF 247
+ + + EL E ++ L K ++++G++L G L A
Sbjct: 176 FTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAI 235
Query: 248 SELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETM 307
+E G E ++ + + + L E +Y + I A + E + +
Sbjct: 236 TEAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLV 295
Query: 308 KLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 367
K + ++ +R + + E+ F + D
Sbjct: 296 A----------------------TSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYD 333
Query: 368 MGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399
+ + Q + +IA+ R L +
Sbjct: 334 YNSVIRLYLEQQVQFYETIAEKLRQALSRFPV 365
|
| >3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 3e-51
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 21 SSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE 80
L ++V +P ++ +I+YR+ITKT+ E+ E V RRY DF+WL+ +L E
Sbjct: 4 PDLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEE 63
Query: 81 KYKGIFIPPLPEKSAVE--KFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQA 138
+ + IPPLPEK V+ RF+ +FIE RR+ L F+NRIA HP L +ED K FL A
Sbjct: 64 AHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTA 123
Query: 139 DEETMER 145
+
Sbjct: 124 QAWELSS 130
|
| >2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 146 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 7e-50
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 12/136 (8%)
Query: 12 GSSQSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDF 71
GSS S S +L + + +P +G G + +Y V +TN P ++ E V RRYSDF
Sbjct: 1 GSSGS----SGSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDF 56
Query: 72 VWLRDRLFEKYKGIFIPPLPEKSAVEKF-------RFSAEFIEMRRQGLDLFVNRIASHP 124
WL++ L E+ I +PPLP K+ + F FIE RRQGL+ F+N+IA HP
Sbjct: 57 EWLKNEL-ERDSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHP 115
Query: 125 ELQQSEDLKTFLQADE 140
Q L FLQ +
Sbjct: 116 LAQNERCLHMFLQEEA 131
|
| >2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} Length = 128 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 5e-47
Identities = 50/128 (39%), Positives = 80/128 (62%), Gaps = 10/128 (7%)
Query: 23 QPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY 82
Q L+V +TDP K+G+G+ AY++Y+V T+T+ P ++ + V RR+SDF+ L ++L EK+
Sbjct: 1 QFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKH 60
Query: 83 --KGIFIPPLPEKSAVEKF--------RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDL 132
G +PP PEKS + SAEF+E RR L+ ++ RI +HP + Q D+
Sbjct: 61 SQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDV 120
Query: 133 KTFLQADE 140
+ FL+ +E
Sbjct: 121 REFLEKEE 128
|
| >1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* Length = 162 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 1e-43
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 2 INTEQQRSASGSSQSPRSPSSQPYLSVSVTDPVK----LGNGVQAYISYRVITKTNFPEY 57
+ + S S + +L + V +P + + Y +I +TN P +
Sbjct: 12 EKSLLSKGHGEPSYSEIYAEPENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSF 71
Query: 58 QGPEKIVIRRYSDFVWLRDRLFEK-----YKGIFIPPLPEKSAVEKFRFSAEFIEMRRQG 112
V RRYSDF + R L ++ + + +P LP K + RFS E IE RRQG
Sbjct: 72 HKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLS-NRFSNEVIEERRQG 130
Query: 113 LDLFVNRIASHPELQQ-SEDLKTFLQADE 140
L+ ++ +A HP LQ S+ L F++A++
Sbjct: 131 LNTWMQSVAGHPLLQSGSKVLVRFIEAEK 159
|
| >3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A Length = 115 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 8e-39
Identities = 27/126 (21%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 21 SSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE 80
S+ + S+ T+ +G AY++Y + RYS + L ++L +
Sbjct: 1 SNAMHFSIPETESRSGDSGGSAYVAYNIHVNGVLH--------CRVRYSQLLGLHEQLRK 52
Query: 81 KYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 140
+Y +P P K F + +E RR+ L+ ++ + P L SE +FL+ +
Sbjct: 53 EYGANVLPAFPPKKL---FSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQ 109
Query: 141 ETMERL 146
+ +++
Sbjct: 110 QETQQV 115
|
| >1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A Length = 154 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 1e-34
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 20 PSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLF 79
S P SVS+ + + + Y+V+ E+ V RRY++F L + L
Sbjct: 4 KESCP--SVSIPSSDEHREKKKRFTVYKVLVSVGRSEW-----FVFRRYAEFDKLYNSLK 56
Query: 80 EKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139
+++ + +P K F +FI+ RR GL+ F+ + +PEL D++ FLQ D
Sbjct: 57 KQFPAM-ALKIPAKRIF-GDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMD 114
Query: 140 EETMERLRSQD 150
+ S+D
Sbjct: 115 SPRHQSDPSED 125
|
| >3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A Length = 161 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 1e-34
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 33/158 (20%)
Query: 21 SSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE 80
+ P L + + D + + + + V TKT P +Q PE V R++ DFVWL D L E
Sbjct: 7 NVDPSLQIDIPDALSERD----KVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTE 62
Query: 81 K--YKGIFIPPLPEKSAVEKF-------------RFSAEFIEMRRQ-------------- 111
Y G+ IPP P K + EF +M+++
Sbjct: 63 TTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVS 122
Query: 112 GLDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQ 149
++F+ R++SHP L + + FL+ D++ R ++
Sbjct: 123 SHEVFLQRLSSHPVLSKDRNFHVFLEYDQDLSVRRKNT 160
|
| >3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Length = 130 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-26
Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 12/139 (8%)
Query: 5 EQQRSASGSSQSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIV 64
S S+ V V Y Y + E+ V
Sbjct: 2 HHHHHHSSGVDLGTENLYFQ----SMEARVVGSELVDTYTVYIIQVTDGSHEWT-----V 52
Query: 65 IRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHP 124
RYSDF L ++L + K I LP K + + S +E R + L++++ ++ +
Sbjct: 53 KHRYSDFHDLHEKLVAERK-IDKNLLPPKKII--GKNSRSLVEKREKDLEVYLQKLLAAF 109
Query: 125 ELQQSEDLKTFLQADEETM 143
L FL +
Sbjct: 110 PGVTPRVLAHFLHFHFYEI 128
|
| >1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1 Length = 117 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 2e-21
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 20/119 (16%)
Query: 30 VTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPP 89
D VK+ Y+ Y V P K + +RYS+F L+ RL
Sbjct: 9 KVDDVKINPK---YVLYGV---------STPNKRLYKRYSEFWKLKTRLERDVGSTIPYD 56
Query: 90 LPEKSAVEKFRF-----SAEFIEMRRQGLDLFVNRIASHPE---LQQSEDLKTFLQADE 140
PEK V R+ E I+ RR GL+ F+N + + + ++ + FLQ +
Sbjct: 57 FPEKPGVLDRRWQRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSK 115
|
| >2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 5e-21
Identities = 26/131 (19%), Positives = 43/131 (32%), Gaps = 8/131 (6%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI 85
+ +S+ V G G A+ + V + V RRYS F + L KY +
Sbjct: 6 IKISIPRYVLCGQGKDAHFEFEVKITVLDETWT-----VFRRYSRFREMHKTLKLKYAEL 60
Query: 86 FIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEETMER 145
P K I RR L+ ++ S + L +
Sbjct: 61 AALEFPPKKLF--GNKDERVIAERRSHLEKYLRDFFSVMLQSATSPLHINKVGLTLSKHT 118
Query: 146 LRSQDTGYFKK 156
+ + + +FKK
Sbjct: 119 IC-EFSPFFKK 128
|
| >2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} Length = 128 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 2e-16
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 12/114 (10%)
Query: 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIF 86
SV + ++++ +RV + + V RRYS+F L R+ + YK
Sbjct: 16 SVGPEAEGPRQSPEKSHMVFRVEVLCSGRRHT-----VPRRYSEFHALHKRIKKLYK--- 67
Query: 87 IPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 140
+P P K + +E RRQGL+ ++ I + E L FL+
Sbjct: 68 VPDFPSKRL---PNWRTRGLEQRRQGLEAYIQGILYLNQEVPKE-LLEFLRLRH 117
|
| >1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 Length = 143 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 4e-16
Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 21/150 (14%)
Query: 5 EQQRSASGSSQSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIV 64
+Q R+ S Q P + +S ++ D + G ++ + + KT G + ++
Sbjct: 4 QQLRAESDFEQLPDDVA----ISANIADIEE-KRGFTSHFVFVIEVKTK----GGSKYLI 54
Query: 65 IRRYSDFVWLRDRLFEKY--------KGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLF 116
RRY F L+ +L E++ +P LP K E EMR L+ +
Sbjct: 55 YRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVY---VGVKQEIAEMRIPALNAY 111
Query: 117 VNR-IASHPELQQSEDLKTFLQADEETMER 145
+ ++ + ED++ F E+
Sbjct: 112 MKSLLSLPVWVLMDEDVRIFFYQSPYDSEQ 141
|
| >2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A Length = 121 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 7e-13
Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI 85
VSV K N + YI Y V Q V R + +F L ++L +
Sbjct: 6 KEVSVFTYHKKYNPDKHYI-YVVRILREG---QIEPSFVFRTFDEFQELHNKLSIIFPLW 61
Query: 86 FIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNR-IASHPELQQSEDLKTFLQADEETME 144
+P P + + + + R+ L+ ++ + + ++ + + + TF
Sbjct: 62 KLPGFPNRMVLGRT-HIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHGSHHHHH 120
|
| >2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 2e-12
Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 6/120 (5%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI 85
VSV K N + YI Y V Q V R + +F L ++L +
Sbjct: 21 KEVSVFTYHKKYNPDKHYI-YVVRILREG---QIEPSFVFRTFDEFQELHNKLSIIFPLW 76
Query: 86 FIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIAS-HPELQQSEDLKTFLQADEETME 144
+P P + + + R+ L+ ++ + + ++ + + + TF +
Sbjct: 77 KLPGFPNRMVL-GRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPLLRDEK 135
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 4e-11
Identities = 56/407 (13%), Positives = 114/407 (28%), Gaps = 134/407 (32%)
Query: 39 GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLF-EKYKGIFIPPLPEKSAVE 97
G Y Y+ I + + + D + L E+ I + K AV
Sbjct: 12 GEHQY-QYKDILSVFEDAFV--DNFDCKDVQDM--PKSILSKEEIDHIIM----SKDAVS 62
Query: 98 KFRFSAEFIEMRRQG---LDLFVNRIASHPELQQSEDLKTFLQADEETMERLRSQDTGYF 154
F + + + FV + L+ + FL M ++++
Sbjct: 63 GTLRL--FWTLLSKQEEMVQKFVEEV-----LRINYK---FL------MSPIKTEQ---- 102
Query: 155 KKKPADLMQIFKDVQSKV-SDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYR 213
++P+ + +++ + + ++ +D + + V + +L L E +
Sbjct: 103 -RQPSMMTRMYIEQRDRLYNDNQVFAKYNV----SRLQPYL----KLRQALLELRPAKNV 153
Query: 214 LVKRHRELGESLSDFGKAAKLLGACEGDALGKAFS------ELG--MKSEALSVKLQREA 265
L+ LG GK L C + L E + LQ+
Sbjct: 154 LI--DGVLG-----SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 266 HQLLMNFEEP-----------------------LKDYVRA------VQSIKATIAERANA 296
+Q+ N+ K Y VQ+ A+ NA
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-----AKAWNA 261
Query: 297 FRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEE 356
F C++ L+ TR +V + + ++
Sbjct: 262 FNLSCKI-------------LLTTRFKQV-----------TDFLSAATTTH---ISLDHH 294
Query: 357 IVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACSSS 403
+ + + K L D LP+ E +++
Sbjct: 295 SMTLTPDEVKSL------LLK---YLDCRPQD-----LPR-EVLTTN 326
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 3e-06
Identities = 62/427 (14%), Positives = 104/427 (24%), Gaps = 133/427 (31%)
Query: 17 PRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRD 76
R PS + + D +L N Q + Y V R ++ LR
Sbjct: 102 QRQPSMMTRMYIEQRD--RLYNDNQVFAKYNV-----------------SRLQPYLKLRQ 142
Query: 77 RLFE--KYKGIFI-------------PPLPEKSAVEKFRFSAEFIEMRRQG-----LDLF 116
L E K + I K F ++ ++ L++
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 117 VN--RIASHPELQQSEDLKTFLQADEETMERLRSQDTGYFKKKP-------------ADL 161
+S+ LR K KP A
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR----LLKSKPYENCLLVLLNVQNAKA 258
Query: 162 MQIFKDVQSKVSDVVLGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHREL 221
F ++ K+ ++ + K V + L+ A L L
Sbjct: 259 WNAF-NLSCKI--LLTTRFKQVTDF-----------------LSAATTTHISLDHHSMTL 298
Query: 222 --GESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDY 279
E S K L + + L RE P
Sbjct: 299 TPDEVKSLLLKY------------------LDCRPQDLP----REVLTTN-----PR--- 328
Query: 280 VRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRS---DKVGEAEIE--YKE 334
+ I +I + + K +N DKL + + AE +
Sbjct: 329 --RLSIIAESIRDGLATWDN---------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 335 LKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFS---KGQARLASSIADAWR 391
L + + + + I + + + H +S K SI +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVI----KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 392 TLLPKLE 398
L KLE
Sbjct: 434 ELKVKLE 440
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 2e-05
Identities = 56/307 (18%), Positives = 102/307 (33%), Gaps = 52/307 (16%)
Query: 78 LFEKYKGIFIPPLPEKSAVEKFRFSAEFI-EMRRQGLDLFVN-RIASHPELQQSEDLKTF 135
L KY LP + I E R GL + N + + +L +++
Sbjct: 306 LLLKYLDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI--IESS 362
Query: 136 LQADEETMERLRSQDTGYFKKK---PADLMQIF--KDVQSKVSDVV--LGKEKPVEESNP 188
L E R F P L+ + ++S V VV L K VE+
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 189 EYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKA-- 246
E I + L ++ Y L HR + + + + D L
Sbjct: 423 ES---TISIPSIYLELKVKLENEYAL---HRSIVDHY-------NIPKTFDSDDLIPPYL 469
Query: 247 ----FSELG--MKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQ 300
+S +G +K E + + F D+ + ++ I + A+
Sbjct: 470 DQYFYSHIGHHLK--------NIEHPERMTLFRMVFLDF----RFLEQKIRHDSTAWNAS 517
Query: 301 CELAETMKLKEINLDKLMLTRSDKVGEAEI-EYKE-LKAESEDSTR-RFETIVR--LMNE 355
+ T L+++ K + +D E + + L E+ ++ ++R LM E
Sbjct: 518 GSILNT--LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575
Query: 356 EIVRFQE 362
+ F+E
Sbjct: 576 DEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 9e-05
Identities = 18/144 (12%), Positives = 51/144 (35%), Gaps = 33/144 (22%)
Query: 43 YISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI-FIPPLPEKSAVEKFRF 101
+I + + + + + DF +L ++ ++ + + +++ +F
Sbjct: 476 HIGHHLKNIEHPERMTLFRMV----FLDFRFLEQKI--RHDSTAWNASGSILNTLQQLKF 529
Query: 102 SAEFIEMRRQGLDLFVNRIASHPELQQS-EDLKTFLQADEETMERLRSQDTGYFKKKPAD 160
+I + P+ ++ + FL EE + + S+ T D
Sbjct: 530 YKPYI-------------CDNDPKYERLVNAILDFLPKIEENL--ICSKYT--------D 566
Query: 161 LMQIFKDVQSKVSDVVLGKEKPVE 184
L++I + ++ + K V+
Sbjct: 567 LLRI--ALMAEDEAIFEEAHKQVQ 588
|
| >1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A Length = 141 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 2e-09
Identities = 21/124 (16%), Positives = 43/124 (34%), Gaps = 11/124 (8%)
Query: 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIF 86
+++ K Q Y+ Y + K EK+V RR+++ L E +
Sbjct: 8 HIALLGFEKRFVPSQHYV-YMFLVKWQ----DLSEKVVYRRFTEIYEFHKTLKEMFPIEA 62
Query: 87 IPPLPEKSAVEKFR-----FSAEFIEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQADE 140
PE + E R+ L + + + S P ++ + L F +
Sbjct: 63 GAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRP 122
Query: 141 ETME 144
+ ++
Sbjct: 123 DDLK 126
|
| >2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens} Length = 149 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 4e-09
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 11/93 (11%)
Query: 59 GPEKIVIRRYSDFVWLRDRLFEKY---------KGIFIPPLPEKSAVEKFRFSAEFIEMR 109
G + V R + +F L+ L E + +P L + + + R
Sbjct: 38 GSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLLGR-VGRTSRGLAR 96
Query: 110 RQGLDLFVNRIASHP-ELQQSEDLKTFLQADEE 141
Q L+ + R+ + + +S + F
Sbjct: 97 LQLLETYSRRLLATAERVARSPTITGFFAPQPL 129
|
| >2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens} Length = 127 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 2e-08
Identities = 10/82 (12%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 59 GPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVN 118
+ + + F L +L +++ + +P P + R + L+ ++
Sbjct: 50 NETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLPFTNSD----HRRFRDLNHYME 105
Query: 119 R-IASHPELQQSEDLKTFLQAD 139
+ + E+ S+ + +F ++
Sbjct: 106 QILNVSHEVTNSDCVLSFFLSE 127
|
| >2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A Length = 156 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 4e-08
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 19/102 (18%)
Query: 59 GPEKIVIRRYSDFVWLRDRLFEKY--------------KGIFIPPLPEKSAVEKFRFSAE 104
G + + R Y DF L+ +L + + +P +P +
Sbjct: 44 GKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPG----PVPYVTNS 99
Query: 105 FIEMRRQGLDLFVNRIASHPE-LQQSEDLKTFLQADEETMER 145
+ R++ L+++V + + P+ + +SE + + +R
Sbjct: 100 ITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNNGFDR 141
|
| >1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 Length = 244 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 7e-05
Identities = 24/246 (9%), Positives = 72/246 (29%), Gaps = 14/246 (5%)
Query: 155 KKKPADLMQIFKDVQSKVSDVVLGKEKPVEESN-PEYEKLKHYIFELENHLAEAQKHAYR 213
+ K L + + + + +L V+ + ++ + + QK
Sbjct: 3 ENKGIMLAKSVQKHAGRAKEKILQNLGKVDRTADEIFDDHLNNFNRQQASANRLQKEFNN 62
Query: 214 LVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFE 273
++ R + + + + + L ++ A AH+L
Sbjct: 63 YIRCVRAAQAASKTLMDSVCEIY----EPQWSGYDALQAQTGASESLWADFAHKLGDQVL 118
Query: 274 EPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYK 333
PL Y +K + +R + + + + K+ + + +
Sbjct: 119 IPLNTYTGQFPEMKKKVEKRNRK-LIDYDGQRH-SFQNLQANANKRKDDVKLTKGREQLE 176
Query: 334 ELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393
E + +E + +++E+ + + L + + + A + L
Sbjct: 177 EARRT-------YEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSEL 229
Query: 394 LPKLEA 399
++
Sbjct: 230 EAIVDK 235
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 403 | |||
| 3dyt_A | 366 | Sorting nexin-9; 3-helix bundle, BAR domain, PX do | 100.0 | |
| 4akv_A | 386 | Sorting nexin-33; transport protein, organelle bio | 100.0 | |
| 3iq2_A | 138 | Sorting nexin-7; SNX7, PHOX, protein signalling, S | 99.97 | |
| 1ocs_A | 162 | Sorting nexin GRD19; sorting protein, PX-domain, y | 99.96 | |
| 2csk_A | 146 | Sorting nexin 12; SNX12, PX domain, structural gen | 99.96 | |
| 3hpc_X | 161 | SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosph | 99.96 | |
| 2i4k_A | 128 | Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al | 99.95 | |
| 3lui_A | 115 | Sorting nexin-17, SNX17; PX domain, endosome, phos | 99.94 | |
| 1xte_A | 154 | Serine/threonine-protein kinase SGK3; CISK, PX dom | 99.92 | |
| 1kmd_A | 117 | VAM7P, vacuolar morphogenesis protein VAM7; PX dom | 99.92 | |
| 2v14_A | 134 | Kinesin-like motor protein C20ORF23; plus-END kine | 99.91 | |
| 3p0c_A | 130 | Nischarin; structural genomics, structural genomic | 99.9 | |
| 1h6h_A | 143 | Neutrophil cytosol factor 4; PX domain; HET: PIB; | 99.9 | |
| 4az9_A | 129 | Sorting nexin-24; protein transport; 1.75A {Homo s | 99.9 | |
| 2ar5_A | 121 | Phosphoinositide 3-kinase; PX domain, transferase; | 99.89 | |
| 2ett_A | 128 | Sorting nexin-22; PX domain, BC019655, SNX22_human | 99.86 | |
| 1kq6_A | 141 | NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha | 99.86 | |
| 2iwl_X | 140 | Phosphatidylinositol-4-phosphate 3-kinase C2 domai | 99.85 | |
| 2l73_A | 149 | NADPH oxidase organizer 1; cell membrane, PX domai | 99.79 | |
| 2v6v_A | 156 | BUD emergence protein 1; homotypic fusion, regulat | 99.79 | |
| 2wwe_A | 127 | Phosphoinositide-3-kinase, class 2, gamma polypept | 99.67 | |
| 2fic_A | 251 | Bridging integrator 1; BAR domain, homodimer, coil | 99.67 | |
| 1uru_A | 244 | Amphiphysin; endocytosis, coiled-coil, membrane cu | 99.64 | |
| 2dyb_A | 341 | Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid | 99.6 | |
| 4avm_A | 237 | Bridging integrator 2; protein binding, plasma mem | 99.44 | |
| 4a3a_A | 243 | Amphiphysin; structural genomics, invagination, kn | 99.39 | |
| 1zww_A | 256 | SH3-containing GRB2-like protein 2; coiled coil, t | 99.12 | |
| 2z0v_A | 240 | SH3-containing GRB2-like protein 3; helix bundle, | 99.03 | |
| 2q12_A | 265 | DIP13 alpha, DCC-interacting protein 13 alpha; APP | 98.84 | |
| 2q13_A | 385 | DCC-interacting protein 13 alpha; APPL1, BAR domai | 98.73 | |
| 1i4d_A | 224 | Arfaptin 2, partner of RAC1; coiled coil, G-protei | 98.59 | |
| 4h8s_A | 407 | DCC-interacting protein 13-beta; BAR domain, pleck | 98.23 | |
| 2v0o_A | 276 | FCHO2, FCH domain only protein 2; lipid-binding pr | 97.68 | |
| 2efl_A | 305 | Formin-binding protein 1; EFC domain, structural g | 97.51 | |
| 3m3w_A | 320 | Pacsin3, protein kinase C and casein kinase II sub | 97.43 | |
| 3plt_A | 234 | Sphingolipid long chain base-responsive protein L; | 97.43 | |
| 2ykt_A | 253 | Brain-specific angiogenesis inhibitor 1-associate | 97.43 | |
| 3haj_A | 486 | Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, | 97.26 | |
| 2efk_A | 301 | CDC42-interacting protein 4; EFC domain, structura | 97.25 | |
| 3aco_A | 350 | Pacsin2, protein kinase C and casein kinase substr | 97.08 | |
| 3i2w_A | 290 | Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt | 97.03 | |
| 3abh_A | 312 | Pacsin2, protein kinase C and casein kinase substr | 96.92 | |
| 2d1l_A | 253 | Metastasis suppressor protein 1; IRSP53, actin bin | 96.92 | |
| 4dyl_A | 406 | Tyrosine-protein kinase FES/FPS; structural genomi | 96.89 | |
| 3g9g_A | 287 | Suppressor of yeast profilin deletion; SYP1, BAR d | 96.42 | |
| 2x3v_A | 337 | Syndapin I, protein kinase C and casein kinase sub | 96.24 | |
| 1uru_A | 244 | Amphiphysin; endocytosis, coiled-coil, membrane cu | 90.39 | |
| 3ok8_A | 222 | Brain-specific angiogenesis inhibitor 1-associate | 86.27 | |
| 3aco_A | 350 | Pacsin2, protein kinase C and casein kinase substr | 84.78 | |
| 3caz_A | 294 | BAR protein; thermo-acidophilic RED ALGA, protein | 84.56 | |
| 3plt_A | 234 | Sphingolipid long chain base-responsive protein L; | 82.96 | |
| 2ykt_A | 253 | Brain-specific angiogenesis inhibitor 1-associate | 81.82 | |
| 2v0o_A | 276 | FCHO2, FCH domain only protein 2; lipid-binding pr | 80.4 |
| >3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-53 Score=402.01 Aligned_cols=337 Identities=21% Similarity=0.364 Sum_probs=272.3
Q ss_pred CCCcEEEEEcCceEeC--CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC-ccCCCCCCCccccc
Q 043025 22 SQPYLSVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG-IFIPPLPEKSAVEK 98 (403)
Q Consensus 22 ~~~~~~v~V~~~~~~~--~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~-~~iP~lP~k~~~~~ 98 (403)
+.+.+.|.|+||++++ +|+++|++|.|.+++ ..|.|+||||||.|||+.|...||+ ++|||||+|..++
T Consensus 17 ~~~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~K~~~g- 88 (366)
T 3dyt_A 17 PTSTFDCVVADPRKGSKMYGLKSYIEYQLTPTN-------TNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVTG- 88 (366)
T ss_dssp CSSCCCEEEECGGGSSSCCCCCSSCEEEEEETT-------CSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC-------
T ss_pred CCCCeEEEEcCceeecCCCCCcCeEEEEEEEec-------CcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcCCcccC-
Confidence 3457899999999997 788899999999864 5799999999999999999999999 9999999999998
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChhh-HHHhh-hccCCCCCCCcchHHHHHHhhhhhhhhhh
Q 043025 99 FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEET-MERLR-SQDTGYFKKKPADLMQIFKDVQSKVSDVV 176 (403)
Q Consensus 99 ~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (403)
+++++||++||.+|+.||++|+.||.|++|+.|+.||+.+++. |+... ..++. +....+||+.+..+.
T Consensus 89 -~~~~~fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL~~~~~~~w~~~~r~~~~~-----~~~g~~~~~~~~~~~---- 158 (366)
T 3dyt_A 89 -RFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERD-----ELAGVMIFSTMEPEA---- 158 (366)
T ss_dssp ------CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHHHCSSHHHHHHHHHHHHTC-----CCCGGGGGGGEEESS----
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhhCCCchhhHHHHhhhhccC-----cccchHHHHHhcCCC----
Confidence 8999999999999999999999999999999999999997664 87432 22221 111123444433211
Q ss_pred cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh-------hhhhHHHHHH
Q 043025 177 LGKEKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKR-HRELGESLSDFGKAAKLLGAC-------EGDALGKAFS 248 (403)
Q Consensus 177 ~~~~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~-~~~l~~~~~~l~~~~~~l~~~-------e~~~L~~~~~ 248 (403)
......+.+++|..++.|+..|+.+++.+.+.+.+++++ ...++.++.++|.+|..|+.+ +++.|++++.
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~L~~al~ 236 (366)
T 3dyt_A 159 --PDLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAIT 236 (366)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Confidence 111233457899999999999999999999999999987 477888888888888888863 3668999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHH
Q 043025 249 ELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEA 328 (403)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l 328 (403)
.+|++++.++...++++..+...+.|+|++|.+++.++|++|.+|..++..+.++.+.+ ..+|+..
T Consensus 237 ~l~~~~~~i~~l~~~qa~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~aL~k~~e~~kl~-------------~~~K~~~- 302 (366)
T 3dyt_A 237 EAGKTYEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLV-------------ATSKITL- 302 (366)
T ss_dssp HHHHHHHHHHHHHHHSGGGTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTHHHHH-------------HTTSSCH-
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hccCcch-
Confidence 99999999999999999999999999999999999999999999999888777763211 1122221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 329 EIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 329 ~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
.+++.++.+|+.|+..++.|+.+|+.+|..||+.+|.+|++.||+||++.++.|+.+++.++.+
T Consensus 303 --------~~~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~~~~w~~~l~~~~~~ 366 (366)
T 3dyt_A 303 --------QDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFPVM 366 (366)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred --------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2456778899999999999999999999999999999999999999999999999999998753
|
| >4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=400.70 Aligned_cols=334 Identities=23% Similarity=0.385 Sum_probs=264.9
Q ss_pred CcEEEEEcCceEeC--CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC
Q 043025 24 PYLSVSVTDPVKLG--NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF 101 (403)
Q Consensus 24 ~~~~v~V~~~~~~~--~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~ 101 (403)
..+.|+|+||++++ +|+++|++|.|.+++ ..|.|+||||||.|||+.|...||+++|||||+|..++ ++
T Consensus 40 ~~~~i~V~dp~k~~~~~g~~~y~~Y~I~~~~-------~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~g--~~ 110 (386)
T 4akv_A 40 HPFACSVEDPTKQTKFKGIKSYISYKLTPTH-------AASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQATG--RF 110 (386)
T ss_dssp SCCCEEEECC------------CCEEEEETT-------SSSCEEECHHHHHHHHHHHHHHCSSSCCCCCCCCC-------
T ss_pred CCeEEEEcCceEecCCCCCcCeEEEEEEEEe-------CCeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCCCcccC--CC
Confidence 45799999999998 788999999999864 46999999999999999999999999999999999998 89
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChhh-HHHh-hhccCCCCCCCcchHHHHHHhhhhhhhhhhcCC
Q 043025 102 SAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEET-MERL-RSQDTGYFKKKPADLMQIFKDVQSKVSDVVLGK 179 (403)
Q Consensus 102 ~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (403)
+++||++||.+|+.||++|+.||.|++|+.|+.||+.+++. |+.. ++..+.. ....++++++..+. .
T Consensus 111 ~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~~~~~~w~~~~r~~~~~~-----~~g~~~~~~~~~~~------~ 179 (386)
T 4akv_A 111 EEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEKDE-----MVGASFLLTFQIPT------E 179 (386)
T ss_dssp -CCTTTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHSCCCSHHHHHHHHHHHTCS-----CCGGGGGGTSBCCS------C
T ss_pred CHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhCCCChhhHHHhhhhccCCC-----ccchHHHHHhcCCc------c
Confidence 99999999999999999999999999999999999987654 8743 2222211 11112333322111 1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-------hhhhhHHHHHHHHH
Q 043025 180 EKPVEESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRH-RELGESLSDFGKAAKLLGA-------CEGDALGKAFSELG 251 (403)
Q Consensus 180 ~~~~~e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~-~~l~~~~~~l~~~~~~l~~-------~e~~~L~~~~~~~~ 251 (403)
.....+.++.|..++.|+..++..++.+.+.+++++++. ..++.++.++|.++..|+. .+++.|++++..+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~ 259 (386)
T 4akv_A 180 HQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTG 259 (386)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHH
T ss_pred ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 112345678999999999999999999999999998884 5667777777777777776 45678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHH
Q 043025 252 MKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIE 331 (403)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~ 331 (403)
++++.++....+++..+...+.|+|++|.+++.++|++|.+|..+++.+.++.+.+ . .++.+
T Consensus 260 ~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~k~~ea~kl~-------~---~~K~~-------- 321 (386)
T 4akv_A 260 RTYEAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFAKVKESQRMS-------D---EGRMV-------- 321 (386)
T ss_dssp HHHHHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---TTSSC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H---hCCcc--------
Confidence 99999999999999999999999999999999999999999999888887774211 0 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 332 YKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 332 i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
..+++.+..+|+.|+..++.|+.+|+.+|..||+.+|.+|++.||.||++.++.|+.+++.++.
T Consensus 322 ----~~~~~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~~l~~f~~ 385 (386)
T 4akv_A 322 ----QDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRMYDN 385 (386)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 1245567899999999999999999999999999999999999999999999999999999875
|
| >3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=215.83 Aligned_cols=120 Identities=43% Similarity=0.704 Sum_probs=109.7
Q ss_pred CCCcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc--c
Q 043025 22 SQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK--F 99 (403)
Q Consensus 22 ~~~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~--~ 99 (403)
+...+.|.|+||+++++|+++|++|.|.++++.|.|.+..|.|+||||||.|||+.|...||++++||||+|..+++ .
T Consensus 5 d~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~ 84 (138)
T 3iq2_A 5 DLKDLFITVDEPESHVTTIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVE 84 (138)
T ss_dssp CCCCCEEEEEEEEEEECSSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCG
T ss_pred ccceEEEEECCCEEecCCCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999998752 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 100 RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 100 ~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
+++++||++||++||.||++|+.||.|++|+.|+.||+.++.
T Consensus 85 ~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~~~ 126 (138)
T 3iq2_A 85 RFNDDFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAW 126 (138)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHTTCB
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCHhhhcChHHHhhhCCCCC
Confidence 569999999999999999999999999999999999998864
|
| >1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-30 Score=214.75 Aligned_cols=118 Identities=36% Similarity=0.667 Sum_probs=110.6
Q ss_pred CCCcEEEEEcCceEe---C-CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhc-----CCccCCCCCC
Q 043025 22 SQPYLSVSVTDPVKL---G-NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKY-----KGIFIPPLPE 92 (403)
Q Consensus 22 ~~~~~~v~V~~~~~~---~-~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~-----p~~~iP~lP~ 92 (403)
+.+++.|.|+||+++ + +|.++|++|.|.++++.|.|.+..|.|+||||||.|||+.|...| |++.+||||+
T Consensus 32 p~~~l~i~V~dp~~~~~~g~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~ 111 (162)
T 1ocs_A 32 PENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPG 111 (162)
T ss_dssp SSCCEEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTT
T ss_pred CCCeEEEEEeCCEEeeccCCCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCC
Confidence 556899999999999 7 788999999999999999999999999999999999999999999 9999999999
Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHHhcCccccC-ChhhhcccccCh
Q 043025 93 KSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQADE 140 (403)
Q Consensus 93 k~~~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~-~~~~~~FL~~~~ 140 (403)
|..++. +++++||++||.+||.||++|+.||.|+. ++.|+.||+.++
T Consensus 112 K~~~~~-~~~~~fie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FL~~~~ 159 (162)
T 1ocs_A 112 KILLSN-RFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 159 (162)
T ss_dssp CCCSSC-TTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCSS
T ss_pred Cccccc-CCCHHHHHHHHHHHHHHHHHHHcCHHhhhCCHHHHHhCCCcc
Confidence 999841 68999999999999999999999999998 999999999874
|
| >2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-30 Score=212.16 Aligned_cols=119 Identities=39% Similarity=0.685 Sum_probs=109.9
Q ss_pred CCCcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc---
Q 043025 22 SQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK--- 98 (403)
Q Consensus 22 ~~~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~--- 98 (403)
+.+++.|.|+||.++++|.++|++|.|.++++.|.|....|.|+||||||.|||+.|... |++++||||+|+.++.
T Consensus 7 ~~~~l~i~V~dp~~~~~g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP~K~~~~~~~~ 85 (146)
T 2csk_A 7 GSNFLEIDIFNPQTVGVGRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPF 85 (146)
T ss_dssp CSCCCEEEEEEEEEESSSSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCSCCCCCCSSTT
T ss_pred CCCcEEEEEcCceEecCCCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCCCCchhhcccc
Confidence 446899999999999999999999999999998989889999999999999999999875 8999999999998731
Q ss_pred ----cCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 99 ----FRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 99 ----~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
.+++++||++||++||.||++|+.||.|++++.|+.||+.++.
T Consensus 86 ~~~~g~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~~~~~ 132 (146)
T 2csk_A 86 RGDEGIFEESFIEERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAI 132 (146)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHTTCSSC
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHHHcChhhccCcHHHhhcCCCch
Confidence 1789999999999999999999999999999999999998864
|
| >3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=209.91 Aligned_cols=117 Identities=33% Similarity=0.678 Sum_probs=104.3
Q ss_pred CCCcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHh--hcCCccCCCCCCCccccc-
Q 043025 22 SQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFE--KYKGIFIPPLPEKSAVEK- 98 (403)
Q Consensus 22 ~~~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~--~~p~~~iP~lP~k~~~~~- 98 (403)
+.+++.|.|+||.++++ ||+|.|.+++++|.|....+.|+||||||.|||+.|.. .||+++|||||+|..++.
T Consensus 8 ~~~~l~i~V~dp~~~~~----~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~~ 83 (161)
T 3hpc_X 8 VDPSLQIDIPDALSERD----KVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGP 83 (161)
T ss_dssp CSCSEEEEEEEEEEETT----EEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHHH
T ss_pred CCCeEEEEECCCeEecC----CEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccch
Confidence 45689999999999975 89999999999999999999999999999999999998 899999999999998731
Q ss_pred -----------cC------------CCHHHHHHHH---HHHHHHHHHHhcCccccCChhhhcccccChhh
Q 043025 99 -----------FR------------FSAEFIEMRR---QGLDLFVNRIASHPELQQSEDLKTFLQADEET 142 (403)
Q Consensus 99 -----------~~------------~~~~~i~~R~---~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~ 142 (403)
.+ ++++||+.|| .+||.||++|+.||+|+.|+.|+.||+.+++.
T Consensus 84 ~~K~~~~g~~~~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~dl 153 (161)
T 3hpc_X 84 REKMQKLGEGEGSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQDL 153 (161)
T ss_dssp HHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCSCS
T ss_pred hhhhhcccccccccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCccc
Confidence 02 3568999754 45999999999999999999999999998754
|
| >2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-29 Score=205.02 Aligned_cols=114 Identities=42% Similarity=0.774 Sum_probs=106.2
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC--CccCCCCCCCcccccc----
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK--GIFIPPLPEKSAVEKF---- 99 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p--~~~iP~lP~k~~~~~~---- 99 (403)
+.|.|+||+++++|+++|++|.|.++++.|+|....|.|+||||||.|||+.|...|| |+++||||+|..++..
T Consensus 4 l~v~V~~~~~~~~g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~~~ 83 (128)
T 2i4k_A 4 LTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKV 83 (128)
T ss_dssp CCCCBCCCCBCCCSSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSCCC
T ss_pred EEEEECCceEecCCCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhhhh
Confidence 6899999999999999999999999998899989999999999999999999999995 5899999999998631
Q ss_pred ----CCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccC
Q 043025 100 ----RFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQAD 139 (403)
Q Consensus 100 ----~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~ 139 (403)
+++++||++||.+||.||+.|+.||.|++|+.|+.||+.+
T Consensus 84 ~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 84 GKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127 (128)
T ss_dssp CSCCCSSTTHHHHHHHHHHHHHHHHHHCHHHHCSHHHHTTTTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHhhCCC
Confidence 3589999999999999999999999999999999999876
|
| >3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-27 Score=188.33 Aligned_cols=106 Identities=23% Similarity=0.436 Sum_probs=95.1
Q ss_pred cEEEEEcCceEeCC--CCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCC
Q 043025 25 YLSVSVTDPVKLGN--GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFS 102 (403)
Q Consensus 25 ~~~v~V~~~~~~~~--~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~ 102 (403)
.+.|.|+++...++ |+++|++|.|.+. ..|.|+||||||.|||+.|...||++.+||||+|..++ ++
T Consensus 3 ~l~v~Ip~~~~~~~~~g~~~y~~Y~I~v~--------~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~~---~~ 71 (115)
T 3lui_A 3 AMHFSIPETESRSGDSGGSAYVAYNIHVN--------GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFS---LT 71 (115)
T ss_dssp --CEEEEEEEEEC-----CCEEEEEEEET--------TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSSC---CC
T ss_pred cEEEEECCeEEecCCCCCCCEEEEEEEEC--------CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCcccC---CC
Confidence 56899999999874 6689999999873 47999999999999999999999999999999999985 79
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 103 AEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 103 ~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
++||++||.+||.||+.|+.||.|++|+.|+.||+.+..
T Consensus 72 ~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~~~~~ 110 (115)
T 3lui_A 72 PAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQ 110 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhhcChHHHHHHCcCHH
Confidence 999999999999999999999999999999999998763
|
| >1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-25 Score=185.62 Aligned_cols=112 Identities=28% Similarity=0.508 Sum_probs=101.6
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCH
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSA 103 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~ 103 (403)
+.+.|+|+++.++++|.++|++|.|.+++ .+..|.|+||||||.|||+.|...||++.+ |||+|.+++. ++++
T Consensus 6 ~~~~v~I~~~~~~~~~~~~~~~Y~I~v~~-----~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~-plP~K~~~g~-~~~~ 78 (154)
T 1xte_A 6 SCPSVSIPSSDEHREKKKRFTVYKVLVSV-----GRSEWFVFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIFGD-NFDP 78 (154)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEEEEE-----TTEEEEEEEEHHHHHHHHHHHHHHCGGGCC-CCCCSCCSSC-TTCH
T ss_pred CCCEEEECCcEEEecCCCCEEEEEEEEEE-----CCEEEEEEeeHHHHHHHHHHHHHHCCCCcc-cCCCccccCC-CCCH
Confidence 45699999999998888899999999987 346899999999999999999999999855 6999999872 5899
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChhh
Q 043025 104 EFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEET 142 (403)
Q Consensus 104 ~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~~ 142 (403)
+||++||.+|+.||+.|+.||.|+.++.|+.||+.+...
T Consensus 79 ~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~~ 117 (154)
T 1xte_A 79 DFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSPR 117 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCGG
T ss_pred HHHHHHHHHHHHHHHHHHcChhhccChHHHHHhCCCCCc
Confidence 999999999999999999999999999999999987654
|
| >1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=176.84 Aligned_cols=104 Identities=32% Similarity=0.445 Sum_probs=92.7
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCC-CCCCCccc-----c
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIP-PLPEKSAV-----E 97 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP-~lP~k~~~-----~ 97 (403)
+.+.|+|+|+.+ .++|++|.|.+ ..|.|+||||||.|||+.|...+| +.+| |||+|..+ +
T Consensus 4 ~~~~v~I~~~~~----~~~~~~Y~I~v---------~~~~V~RRYsdF~~L~~~L~~~~~-~~~P~~lP~K~~~~~~~~~ 69 (117)
T 1kmd_A 4 EKLRIKVDDVKI----NPKYVLYGVST---------PNKRLYKRYSEFWKLKTRLERDVG-STIPYDFPEKPGVLDRRWQ 69 (117)
T ss_dssp CCCCCEEEEEEE----CSSCEEEEEEC---------SSCCEEECHHHHHHHHHHHHHHHC-SCCCCCCCCCCCSSCSTTC
T ss_pred CCEEEEECCcee----cCCEEEEEEEE---------ceEEEEechHHHHHHHHHHHHHcC-ccCCCCCCCCCEecccccc
Confidence 468999999998 25899999988 379999999999999999999998 7899 99999986 1
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcCccc---cCChhhhcccccChh
Q 043025 98 KFRFSAEFIEMRRQGLDLFVNRIASHPEL---QQSEDLKTFLQADEE 141 (403)
Q Consensus 98 ~~~~~~~~i~~R~~~L~~fl~~~~~~~~l---~~~~~~~~FL~~~~~ 141 (403)
..+++++||++||.+||.||+.|+.||.+ +.++.|+.||+.+.+
T Consensus 70 ~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~~~ 116 (117)
T 1kmd_A 70 RRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSKP 116 (117)
T ss_dssp CCTTCHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCCCC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHhCcchhhhhcCHHHHHhcCCCCC
Confidence 12789999999999999999999999965 789999999998764
|
| >2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=176.56 Aligned_cols=102 Identities=23% Similarity=0.216 Sum_probs=94.6
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHH
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~ 104 (403)
.+.|+|+++..+++|.++|++|.|.+.++ +..|.|+||||||.|||+.|...||++.+||||+|++++ +++++
T Consensus 5 ~i~VsIp~~~~~~~~~~~~~~Y~I~v~~~-----~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~~--~~~~~ 77 (134)
T 2v14_A 5 PIKISIPRYVLCGQGKDAHFEFEVKITVL-----DETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLFG--NKDER 77 (134)
T ss_dssp CEEEEEEEEEEESSTTSCEEEEEEEEEET-----TEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSSC--TTSHH
T ss_pred CEEEEECcEEEEecCCCCEEEEEEEEEEC-----CeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCcccc--CCCHH
Confidence 57999999999998889999999999873 578999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHHHhcCcc-ccCChhhh
Q 043025 105 FIEMRRQGLDLFVNRIASHPE-LQQSEDLK 133 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~~~~-l~~~~~~~ 133 (403)
||++||.+||.||+.|+.||. +++++.+.
T Consensus 78 ~ie~Rr~~Le~yL~~ll~~~~~l~~sp~~l 107 (134)
T 2v14_A 78 VIAERRSHLEKYLRDFFSVMLQSATSPLHI 107 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTSTTCT
T ss_pred HHHHHHHHHHHHHHHHHhChHhhcCCHHHH
Confidence 999999999999999999996 88888543
|
| >3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-24 Score=174.57 Aligned_cols=114 Identities=21% Similarity=0.226 Sum_probs=94.2
Q ss_pred CCCCCCCCCcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCcc
Q 043025 16 SPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSA 95 (403)
Q Consensus 16 ~~~~~~~~~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~ 95 (403)
+|+.-...|...|.|.+.+. .++|++|.|.+... +..|.|.||||||.|||+.|...+|. .+||||+|+.
T Consensus 13 ~~~~~v~ips~~v~I~~~~~----~~~y~~Y~I~v~~~-----~~~~~V~RRYSdF~~L~~~L~~~~~~-~~p~lP~K~~ 82 (130)
T 3p0c_A 13 LGTENLYFQSMEARVVGSEL----VDTYTVYIIQVTDG-----SHEWTVKHRYSDFHDLHEKLVAERKI-DKNLLPPKKI 82 (130)
T ss_dssp ----CCCEECCEEEEEEEEC----SSSSCEEEEEEECS-----SCEEEEEEEHHHHHHHHHHHHHTTSS-CTTSCCCCCC
T ss_pred CCCceeEeeeeEEEEEeccc----cCCEEEEEEEEEEC-----CeEEEEEehHHHHHHHHHHHHHHcCC-CCCCCCCccc
Confidence 33333344445555554332 36899999999863 57899999999999999999999975 4799999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 96 VEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 96 ~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
++ +++++||++||.+|+.||+.|+.||.++.++.|+.||+.++.
T Consensus 83 ~g--~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL~~~~~ 126 (130)
T 3p0c_A 83 IG--KNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFHFY 126 (130)
T ss_dssp CS--CCCSCSHHHHHHHHHHHHHHHHHTSCSEECHHHHHHHHSCTT
T ss_pred cc--cCCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhCCCcc
Confidence 99 789999999999999999999999999999999999998864
|
| >1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=173.38 Aligned_cols=112 Identities=24% Similarity=0.391 Sum_probs=99.7
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC--------CccCCCCCCCcc
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK--------GIFIPPLPEKSA 95 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p--------~~~iP~lP~k~~ 95 (403)
..+.|+|+++++..+ .+.|++|.|.+... ++..|.|+||||||.+||..|...|| ++++|+||+|..
T Consensus 19 ~~i~v~I~~~e~~~~-~~~~~vY~I~v~~~----~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~ 93 (143)
T 1h6h_A 19 VAISANIADIEEKRG-FTSHFVFVIEVKTK----GGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVY 93 (143)
T ss_dssp CEEEEEEEEEEEECS-SSCEEEEEEEEEET----TSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCC
T ss_pred CeEEEEEcCccccCC-CCCeEEEEEEEEEc----CCCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCCCcc
Confidence 357899999986654 46899999999864 35789999999999999999999999 457999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHhcCcc-ccCChhhhcccccChhhH
Q 043025 96 VEKFRFSAEFIEMRRQGLDLFVNRIASHPE-LQQSEDLKTFLQADEETM 143 (403)
Q Consensus 96 ~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~-l~~~~~~~~FL~~~~~~~ 143 (403)
++ + +++|+++||.+|+.||+.|+.+|. ++.|+.|..||+....++
T Consensus 94 ~~--~-~~~~ie~Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~~~d~ 139 (143)
T 1h6h_A 94 VG--V-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYDS 139 (143)
T ss_dssp SS--C-HHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHHHH
T ss_pred cC--c-CHHHHHHHHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCCcccc
Confidence 98 5 899999999999999999999997 999999999999987654
|
| >4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=167.30 Aligned_cols=118 Identities=20% Similarity=0.318 Sum_probs=93.7
Q ss_pred ccCCCCCCCCCCCCCCcEEEEEcCceEeCCCC-cceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccC
Q 043025 9 SASGSSQSPRSPSSQPYLSVSVTDPVKLGNGV-QAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFI 87 (403)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~v~V~~~~~~~~~~-~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~i 87 (403)
|.+.+.+.-+ .....+.|+|+++...+++. ++|++|.|.+.. .+..|.|+||||||.|||+.|...+| +
T Consensus 8 ssgvd~~~en--~~~~~~~V~Ip~~~~~~~~~~k~y~vY~I~v~~-----~~~~w~V~RRYsdF~~L~~~L~~~~~---~ 77 (129)
T 4az9_A 8 SSGVDLGTEN--LYFQSMEVYIPSFRYEESDLERGYTVFKIEVLM-----NGRKHFVEKRYSEFHALHKKLKKCIK---T 77 (129)
T ss_dssp ------CCTT--CCCCCCEEEEEEEEEECCTTSCCEEEEEEEEEE-----TTEEEEEEEEHHHHHHHHHHHTTTSC---C
T ss_pred cCcccccccc--cccceeEEEECcEEEEecCCCCCEEEEEEEEEE-----CCEEEEEEeeHHHHHHHHHHHHHhCC---C
Confidence 3344444333 22345789999988887654 689999999987 35789999999999999999999887 6
Q ss_pred CCCCCCccccccCCCHHHHHHHHHHHHHHHHHHhcCccccCChhhhcccccCh
Q 043025 88 PPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 140 (403)
Q Consensus 88 P~lP~k~~~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~ 140 (403)
|+||+|... +++++||++||.+||.||+.|+.+|.+. ++.|..||+.+.
T Consensus 78 p~lP~K~~~---~~~~~~ie~Rr~~Le~yL~~ll~~~~~~-~~~l~~FL~~~~ 126 (129)
T 4az9_A 78 PEIPSKHVR---NWVPKVLEQRRQGLETYLQAVILENEEL-PKLFLDFLNVRH 126 (129)
T ss_dssp CCCCCSCCS---CCCHHHHHHHHHHHHHHHHHHHHHCSSC-CHHHHHHTTC--
T ss_pred CCCCccccc---CCCHHHHHHHHHHHHHHHHHHHhCchhh-CHHHHHHCCCCC
Confidence 899988754 6899999999999999999999999875 789999999864
|
| >2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-23 Score=165.03 Aligned_cols=109 Identities=18% Similarity=0.257 Sum_probs=96.4
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCC-CceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC-C
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQG-PEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF-S 102 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~-~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~-~ 102 (403)
.+.|+|.++++..++.+.| +|.|.+... ++ ..|.|.|||+||.+||..|.+.||+..+|+||+|..++ +. +
T Consensus 5 i~~v~V~~~ek~~~~~k~y-~Y~I~v~~~----~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~g--~~~~ 77 (121)
T 2ar5_A 5 IKEVSVFTYHKKYNPDKHY-IYVVRILRE----GQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLG--RTHI 77 (121)
T ss_dssp EEEEEEEEEECCCSSSSCC-EEEEEEEET----TCSSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCSS--SSST
T ss_pred EEEEEECcEEEEecCCCcE-EEEEEEEEC----CCceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeecC--ccCc
Confidence 4689999999988665445 599999874 22 58999999999999999999999999999999999998 44 6
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-ccccCChhhhcccccCh
Q 043025 103 AEFIEMRRQGLDLFVNRIASH-PELQQSEDLKTFLQADE 140 (403)
Q Consensus 103 ~~~i~~R~~~L~~fl~~~~~~-~~l~~~~~~~~FL~~~~ 140 (403)
.+++++||.+|+.||+.|++. |.++.|+.+..|+.+..
T Consensus 78 ~~~~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~~ 116 (121)
T 2ar5_A 78 KDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHGSH 116 (121)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhcCCHHHHHHcCCcc
Confidence 789999999999999999986 69999999999999864
|
| >2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-22 Score=160.31 Aligned_cols=90 Identities=29% Similarity=0.471 Sum_probs=82.0
Q ss_pred CCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHHHHHHHHHHHHHH
Q 043025 39 GVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVN 118 (403)
Q Consensus 39 ~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i~~R~~~L~~fl~ 118 (403)
+.++|++|.|.+..+ +..|.|.||||||.|||+.|...|| +||||+|..+ +++++||++||.+||.||+
T Consensus 28 ~~~~~~~Y~I~v~~~-----~~~~~V~RRYSdF~~Lh~~L~~~~~---iP~lP~K~~~---~~~~~~ie~Rr~~Le~yL~ 96 (128)
T 2ett_A 28 PEKSHMVFRVEVLCS-----GRRHTVPRRYSEFHALHKRIKKLYK---VPDFPSKRLP---NWRTRGLEQRRQGLEAYIQ 96 (128)
T ss_dssp SSCCCCEEEEEEEET-----TEEEEEEEEHHHHHHHHHHHHTTSS---CCCCCCSSCC---CSSSSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEEC-----CcEEEEECCHHHHHHHHHHHHHHCC---CCCCCCCccC---CCCHHHHHHHHHHHHHHHH
Confidence 457999999999873 4689999999999999999999987 8999999964 5899999999999999999
Q ss_pred HHhcCccccCChhhhcccccCh
Q 043025 119 RIASHPELQQSEDLKTFLQADE 140 (403)
Q Consensus 119 ~~~~~~~l~~~~~~~~FL~~~~ 140 (403)
.|+.||.+. ++.|..||+.+.
T Consensus 97 ~ll~~p~~~-s~~l~~FL~~~~ 117 (128)
T 2ett_A 97 GILYLNQEV-PKELLEFLRLRH 117 (128)
T ss_dssp HHHHHSSSS-CHHHHHHHTCTT
T ss_pred HHHhCchhc-CHHHHHhcCCcc
Confidence 999999887 799999999875
|
| >1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=159.33 Aligned_cols=110 Identities=19% Similarity=0.255 Sum_probs=96.9
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCc---------cCCCCCCCcc
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI---------FIPPLPEKSA 95 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~---------~iP~lP~k~~ 95 (403)
...|.|.++++.+.+ ++|++|.|.+... ++..|.|.|||+||.+||..|...||.. .+|+||+|..
T Consensus 6 i~~v~V~~~ek~~~~-~~~~~Y~I~V~~~----~~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP~K~~ 80 (141)
T 1kq6_A 6 IRHIALLGFEKRFVP-SQHYVYMFLVKWQ----DLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKW 80 (141)
T ss_dssp EEEEEEEEEEEECSS-SCEEEEEEEEEET----TCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCC
T ss_pred EEEEEEccEEEecCC-CCeEEEEEEEEEc----CCCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCCCccc
Confidence 457999999998865 4677799999874 4568999999999999999999999975 7999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHhcCc-cccCChhhhcccccChhhH
Q 043025 96 VEKFRFSAEFIEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQADEETM 143 (403)
Q Consensus 96 ~~~~~~~~~~i~~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~~~~~~ 143 (403)
++ + .+++++||.+|+.||+.|+.+| .++.|+.+..||+....+.
T Consensus 81 ~~--~--~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~~~d~ 125 (141)
T 1kq6_A 81 FD--G--QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPDDL 125 (141)
T ss_dssp CC--S--HHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHHHH
T ss_pred cC--C--HHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCCcccc
Confidence 88 3 8999999999999999999987 5899999999999877554
|
| >2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-22 Score=161.45 Aligned_cols=112 Identities=18% Similarity=0.177 Sum_probs=90.0
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCC-C
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRF-S 102 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~-~ 102 (403)
..+.|.|.++++..++. +|++|.|.+.... ....|.|.|||+||.+||..|...||+..+|+||+|..++ +. +
T Consensus 19 ~i~~v~I~~~ek~~~~~-k~~~Y~I~V~~~~---~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~~--~~~~ 92 (140)
T 2iwl_X 19 RIKEVSVFTYHKKYNPD-KHYIYVVRILREG---QIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVLG--RTHI 92 (140)
T ss_dssp CEEEEEEEEEEECCSSS-SCEEEEEEEEETT---CSSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC-----------
T ss_pred eeEEEEECcEEEEecCC-CeEEEEEEEEECC---CceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeecC--ccch
Confidence 45689999999887654 5667999998741 1147999999999999999999999999999999999998 55 5
Q ss_pred HHHHHHHHHHHHHHHHHHhc-CccccCChhhhcccccChh
Q 043025 103 AEFIEMRRQGLDLFVNRIAS-HPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 103 ~~~i~~R~~~L~~fl~~~~~-~~~l~~~~~~~~FL~~~~~ 141 (403)
.+++++||.+|+.||+.|++ +|.++.|+.+..||+....
T Consensus 93 ~~~~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~~~ 132 (140)
T 2iwl_X 93 KDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPLLR 132 (140)
T ss_dssp -CCCCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCCCC
Confidence 67999999999999999998 6799999999999998653
|
| >2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-19 Score=148.29 Aligned_cols=113 Identities=14% Similarity=0.198 Sum_probs=97.5
Q ss_pred EEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC---------CccCCCCCCCccc
Q 043025 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK---------GIFIPPLPEKSAV 96 (403)
Q Consensus 26 ~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p---------~~~iP~lP~k~~~ 96 (403)
..|.|.++++...+.+.|++|.|.+... ++..|.|+|||+||.+||..|...|| .+++|+||+|.++
T Consensus 9 ~~v~v~~~ek~~~~~~~y~~Y~I~V~~~----d~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~ 84 (149)
T 2l73_A 9 PRYPVSVQGAALVQIKRLQTFAFSVRWS----DGSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLL 84 (149)
T ss_dssp CCCEEEEEEEEEECCSSSCEEEEEEEET----TSCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCC
T ss_pred eEEEEEeeeEeecCCCceEEEEEEEEEe----CCCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeee
Confidence 4688888888876667899999999864 45789999999999999999999998 3579999999999
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhcCc-cccCChhhhcccccChhhH
Q 043025 97 EKFRFSAEFIEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQADEETM 143 (403)
Q Consensus 97 ~~~~~~~~~i~~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~~~~~~ 143 (403)
+. ..+.+++++|+..|+.||+.|++.| .++.|+.++.||.....+.
T Consensus 85 ~~-~~~~~~~e~R~~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~D~ 131 (149)
T 2l73_A 85 GR-VGRTSRGLARLQLLETYSRRLLATAERVARSPTITGFFAPQPLDL 131 (149)
T ss_dssp SS-CCHHHHHHHHHHHHHHHHHHHHHHCHHHHHSHHHHHHHSCCGGGG
T ss_pred cc-ccchHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCcccc
Confidence 72 1367899999999999999999876 5999999999999877554
|
| >2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A | Back alignment and structure |
|---|
Probab=99.79 E-value=9.7e-19 Score=144.60 Aligned_cols=108 Identities=16% Similarity=0.276 Sum_probs=91.7
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC--------------ccCCCC
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG--------------IFIPPL 90 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~--------------~~iP~l 90 (403)
.+.|+|.+....+ .+++|.|.+... ++..|.|.|||+||.+||..|...||. +++|+|
T Consensus 18 ~~~~sI~~~~~~~----~~y~Y~I~V~~~----d~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~L 89 (156)
T 2v6v_A 18 LVKASVESFGLED----EKYWFLVCCELS----NGKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYI 89 (156)
T ss_dssp EEEEEEEEEEEET----TEEEEEEEEEET----TSCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCCC
T ss_pred ceEEEEeeEEEEC----CEEEEEEEEEEc----CCCEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCCC
Confidence 4678888776653 355699999874 457899999999999999999999974 679999
Q ss_pred CCCccccccCCCHHHHHHHHHHHHHHHHHHhc-CccccCChhhhcccccChhhHH
Q 043025 91 PEKSAVEKFRFSAEFIEMRRQGLDLFVNRIAS-HPELQQSEDLKTFLQADEETME 144 (403)
Q Consensus 91 P~k~~~~~~~~~~~~i~~R~~~L~~fl~~~~~-~~~l~~~~~~~~FL~~~~~~~~ 144 (403)
|+|.+++ +++++++||.+|+.||+.|+. ++.++.|+.++.||.....++.
T Consensus 90 P~K~~~~----~~~~~e~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~~D~~ 140 (156)
T 2v6v_A 90 PGPVPYV----TNSITKKRKEDLNIYVADLVNLPDYISRSEMVHSLFVVLNNGFD 140 (156)
T ss_dssp CCCCSSC----CHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCCSSSSC
T ss_pred CCCcccC----CHHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCCcccc
Confidence 9999875 579999999999999999998 4579999999999998776543
|
| >2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-17 Score=124.77 Aligned_cols=101 Identities=14% Similarity=0.260 Sum_probs=85.3
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHH
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAE 104 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~ 104 (403)
...++|.+..+. +...|.|.+... ++..|.|.|||++|..||.+|++.||...+|+||+|..++ ++..
T Consensus 25 i~~~~v~~~~k~-----~~~~Yvi~V~~s----d~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll~---~t~~ 92 (127)
T 2wwe_A 25 IERATILGFSKK-----SSNLYLIQVTHS----NNETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHLP---FTNS 92 (127)
T ss_dssp EEEEEEEEEETT-----EEEEEEEEEEET----TSCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSHH---HHHC
T ss_pred EEEEEEEEEEec-----ccEEEEEEEEEe----CCCeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCccccC---cCHH
Confidence 446777777544 345599999874 4578999999999999999999999999999999999877 3444
Q ss_pred HHHHHHHHHHHHHHHHhc-CccccCChhhhccccc
Q 043025 105 FIEMRRQGLDLFVNRIAS-HPELQQSEDLKTFLQA 138 (403)
Q Consensus 105 ~i~~R~~~L~~fl~~~~~-~~~l~~~~~~~~FL~~ 138 (403)
-++ |+++|+.||+.|++ .|.+.+|+.+..||..
T Consensus 93 ~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 93 DHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp HHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 455 99999999999999 7999999999999864
|
| >2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A | Back alignment and structure |
|---|
Probab=99.67 E-value=8.1e-14 Score=125.83 Aligned_cols=201 Identities=10% Similarity=0.080 Sum_probs=159.0
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|+.|......++.++..++.+.+.+..++...+.+......||.++..+.....+. ...+..++..+. ....+..
T Consensus 50 ~D~~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~~~~~---~~~~d~~ 125 (251)
T 2fic_A 50 KDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWPG-RDEANKIAENND---LLWMDYH 125 (251)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSTT-HHHHHHHHHHHH---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCC-chhHHHHHHHHH---HHHHHHH
Confidence 389999999999999999999999999999999999999999999998865433221 122333444333 2223333
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
......+.+||..|..++..++.+++.|..++.+|+.+.+++.+.+.+-.+ ++ ..+.+++.+++.+++.
T Consensus 126 ~~l~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k----d~-------~kl~kae~el~~ak~~ 194 (251)
T 2fic_A 126 QKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKK----DE-------AKIAKAEEELIKAQKV 194 (251)
T ss_dssp HHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcC----cH-------HHHHHHHHHHHHHHHH
Confidence 445577999999999999999999999999999999988776654332111 23 3445566777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
|+.++..++.|++.|...+...+...|..|+..|+.||.++...|+.+.+.++.+.
T Consensus 195 ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~~~~ 250 (251)
T 2fic_A 195 FEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLE 250 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999998764
|
| >1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=6e-14 Score=126.21 Aligned_cols=202 Identities=11% Similarity=0.099 Sum_probs=163.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAH 266 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~ 266 (403)
|+.|......++.++..++.|.+.+..+....+.+......||.++..+....... ...+..+++ .+.....+...
T Consensus 36 D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~~~---~~~~~~~~~~~ 111 (244)
T 1uru_A 36 DEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSG-YDALQAQTG---ASESLWADFAH 111 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTT-HHHHHHHHH---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-chHHHHHHH---HHHHHHHHHHH
Confidence 89999999999999999999999999999998899888889999998876554322 123333333 34444455666
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 043025 267 QLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 267 ~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~ 346 (403)
.....+.+||..|..++..++..++.|..++.+|+.+.+++.+.+.+-++ ...+.|+.+ ++.+++.+++.|
T Consensus 112 ~~~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k--~kd~~kl~~-------ae~el~~ak~~y 182 (244)
T 1uru_A 112 KLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANK--RKDDVKLTK-------GREQLEEARRTY 182 (244)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCB--TTBCCTTTT-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc--CccHHHHHH-------HHHHHHHHHHHH
Confidence 67788999999999999999999999999999999998877665432111 123445544 455667778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 347 ETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 347 ~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
+.++..++.|++.|...+...+..+|..|+..|+.||.++...|+.+.+.++.+.
T Consensus 183 e~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l~ 237 (244)
T 1uru_A 183 EILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLA 237 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998887653
|
| >2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-15 Score=141.61 Aligned_cols=111 Identities=24% Similarity=0.376 Sum_probs=96.3
Q ss_pred CcEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC--------ccCCCCCCCcc
Q 043025 24 PYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG--------IFIPPLPEKSA 95 (403)
Q Consensus 24 ~~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~--------~~iP~lP~k~~ 95 (403)
..+.|+|+++++.... ++|++|.|.+... ++..|.|.|||+||..||..|...||. +++|+||+|..
T Consensus 22 ~~~~v~I~~~~~~~~~-~~~~~Y~i~v~~~----~~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~k~~ 96 (341)
T 2dyb_A 22 VAISANIADIEEKRGF-TSHFVFVIEVKTK----GGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKVY 96 (341)
T ss_dssp SEEEEEEEEEEEEESS-SEEEEEEEEEEET----TSCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCCCCC
T ss_pred CcEEEEECCeEEecCC-CcEEEEEEEEEEc----CCcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCCccc
Confidence 4578999999877544 5799999999863 457899999999999999999999984 46999999999
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHHhcCcc-ccCChhhhcccccChhh
Q 043025 96 VEKFRFSAEFIEMRRQGLDLFVNRIASHPE-LQQSEDLKTFLQADEET 142 (403)
Q Consensus 96 ~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~-l~~~~~~~~FL~~~~~~ 142 (403)
++ + ..+++++|+..|+.||+.|+.+|. +..++.+..|+.....+
T Consensus 97 ~~--~-~~~~~e~R~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~~~d 141 (341)
T 2dyb_A 97 VG--V-KQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYD 141 (341)
T ss_dssp CS--C-HHHHHHHHHHHHHHHHHHHHHSCHHHHTCHHHHHHHSCCHHH
T ss_pred cC--c-cHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhhcccc
Confidence 97 4 788999999999999999999886 89999999999876644
|
| >4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-10 Score=101.51 Aligned_cols=201 Identities=12% Similarity=0.115 Sum_probs=160.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQRE 264 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~ 264 (403)
..|+.|......++.++..++.|.+.+.......+.+...-..++.++..+........ ..+..+....+ ....+.
T Consensus 30 T~D~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~~y~~~~~~~-~~~~~~~~~~~---~l~~~~ 105 (237)
T 4avm_A 30 TKDERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWDGH-EELKAIVWNND---LLWEDY 105 (237)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTH-HHHHHHHHHHH---HHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcH-HHHHHHHHHHH---HHHHHH
Confidence 35999999999999999999999999999999999999998999999988876543221 11222222222 223333
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 265 AHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 265 ~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
.......+..|+..|..++..++.++..|..++.+|....+++.+.+.+ +..+ +..+.+++.+++.+++
T Consensus 106 ~~~l~~~vi~Pl~~~~~~~~~i~k~I~KR~~kllDyd~~~~~~~kl~~k----~~kd-------~~kl~kae~el~~a~~ 174 (237)
T 4avm_A 106 EEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNA----KKKD-------EAKTAKAEEEFNKAQT 174 (237)
T ss_dssp HHHHCCCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----SSCC-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCc-------HHHHHHHHHHHHHHHH
Confidence 3444556789999999999999999999999999999998777654322 0112 3566677888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
.|+.++..++.||+.|...+..-+...|..|+..|..||.++...|..+-.-+..+
T Consensus 175 ~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~~i~~q~~f~~~~~~~~~~l~~~~~~~ 230 (237)
T 4avm_A 175 VFEDLNQELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKL 230 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988776654
|
| >1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.9e-08 Score=89.30 Aligned_cols=191 Identities=12% Similarity=0.170 Sum_probs=145.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHH------HHHHHHHHHHHHHHHHHh--hhh
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVK----------------RHR------ELGESLSDFGKAAKLLGA--CEG 240 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k----------------~~~------~l~~~~~~l~~~~~~l~~--~e~ 240 (403)
+.|+.|......++.++..+..|.+....... ... .+..+...||.++...+. .+.
T Consensus 28 el~~d~~~lE~r~d~~k~~~~kl~k~~~~yl~~np~~r~~~~~~~~i~k~~g~~k~~~~p~~~~~L~~~m~~~~~~l~~~ 107 (256)
T 1zww_A 28 KLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDD 107 (256)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTTC---------------------CCHHHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHhhCCCC
Confidence 35888999988888888888777776664332 000 000111234444444333 134
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Q 043025 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLML 319 (403)
Q Consensus 241 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~ 319 (403)
+.++.++..+|.+...++.....+.......|++||..++. .+..+....+.+..+..+|..+..++.
T Consensus 108 s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~----------- 176 (256)
T 1zww_A 108 CNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQG----------- 176 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTT-----------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 57889999999999999999888888888999999999875 888888888888888889988754321
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 320 TRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 320 ~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
|. ++.+++.++.+|+..+..+..++..|.... .++-..|.+|+..|+.||+++.+.++.+.+.++.
T Consensus 177 ----k~---------~eeEle~A~~~fe~~~e~~~~~m~~l~~~e-~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~ 242 (256)
T 1zww_A 177 ----KI---------PDEELRQALEKFDESKEIAESSMFNLLEMD-IEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEE 242 (256)
T ss_dssp ----TS---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----cc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 356788888999999999999999998654 5666999999999999999999999999999875
Q ss_pred c
Q 043025 400 C 400 (403)
Q Consensus 400 ~ 400 (403)
.
T Consensus 243 ~ 243 (256)
T 1zww_A 243 R 243 (256)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.4e-08 Score=86.17 Aligned_cols=186 Identities=15% Similarity=0.199 Sum_probs=142.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHHH
Q 043025 185 ESNPEYEKLKHYIFELENHLAEAQKHAYRLVKR-----------------------------HRELGESLSDFGKAAKLL 235 (403)
Q Consensus 185 e~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~-----------------------------~~~l~~~~~~l~~~~~~l 235 (403)
+.++.|..+...++.+......|.+.......- ...|+..|.+.|..|.
T Consensus 12 el~~d~~~lE~r~d~~~~~~~~l~k~~~~yl~pn~~~r~~~~~~~~i~k~~~~~k~~~~~~~~~~L~~~m~~~~~~l~-- 89 (240)
T 2z0v_A 12 KLDDEFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLKYGKELG-- 89 (240)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHTCCCCCCSSCCCCCCSSCCHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHhhcC--
Confidence 347888888888888888777777766655331 0123444444443332
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 043025 236 GACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYV-RAVQSIKATIAERANAFRQQCELAETMKLKEINL 314 (403)
Q Consensus 236 ~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~-~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l 314 (403)
+.+.++.++..+|.+...++.....+.......|.+||..++ ..+..++...+.+.....+|..+..++.
T Consensus 90 ---~ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~~------ 160 (240)
T 2z0v_A 90 ---EDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRVG------ 160 (240)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTTT------
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 245789999999999999999988888888999999999998 6788888878777778888877643221
Q ss_pred HHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 315 DKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 315 ~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~ 394 (403)
| ..+.+++.++.+|+..+..+..++..+...+ .++-+.|..|++.|+.||+++.+.++.+.
T Consensus 161 ---------k---------~~eeEl~~A~~~fe~~~e~~~~~m~~~~~~~-~e~l~~l~~~v~aQl~y~~~~~e~L~~l~ 221 (240)
T 2z0v_A 161 ---------K---------IPDEEVRQAVEKFEESKELAERSMFNFLEND-VEQVSQLAVFIEAALDYHRQSTEILQELQ 221 (240)
T ss_dssp ---------S---------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHST-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------c---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1266778888889999999999999998664 56666999999999999999999999999
Q ss_pred HHhhhc
Q 043025 395 PKLEAC 400 (403)
Q Consensus 395 ~~~~~~ 400 (403)
+.++..
T Consensus 222 ~~l~~~ 227 (240)
T 2z0v_A 222 SKLQMR 227 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998754
|
| >2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A | Back alignment and structure |
|---|
Probab=98.84 E-value=4.5e-06 Score=75.46 Aligned_cols=196 Identities=11% Similarity=0.067 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 194 KHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGAC------EGDALGKAFSELGMKSEALSVKLQREAHQ 267 (403)
Q Consensus 194 ~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~------e~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 267 (403)
...+..++..++++.+.+..++.....++.+...|+..+..++.. ..+.+..++..+|..+..+..........
T Consensus 27 E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~~~~l~~~ 106 (265)
T 2q12_A 27 EEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQ 106 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666677777777777777776531 12346678889999999998888777888
Q ss_pred HHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHH
Q 043025 268 LLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 268 ~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~ 346 (403)
....+..||..++. .+..+++.=+.=++...+|+.+..+.. .+...++. +..+.++..++..++..|
T Consensus 107 ~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~-------~~~k~k~~-----e~~l~Ea~~~l~~~Rk~f 174 (265)
T 2q12_A 107 LADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYS-------RLSKKREN-----DKVKYEVTEDVYTSRKKQ 174 (265)
T ss_dssp HHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTSCCC-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCCCcc-----hhhHHHHHHHHHHHHHHH
Confidence 88889999998874 566666543333334445555443322 22222211 233456677788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhcc
Q 043025 347 ETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWR-TLLPKLEACS 401 (403)
Q Consensus 347 ~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We-~~~~~~~~~~ 401 (403)
....-.....+...+..+..++-..|..|+..+..|+++..++|. ++.|.++.+.
T Consensus 175 ~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~~~~~p~~~~l~ 230 (265)
T 2q12_A 175 HQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIG 230 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888899999999999999999999999995 8888887654
|
| >2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-05 Score=75.74 Aligned_cols=195 Identities=11% Similarity=0.064 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGA-----C-EGDALGKAFSELGMKSEALSVKLQREAHQL 268 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~-----~-e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (403)
..+..++..++.+.+.+.+++....+++.+...|+..|..++. . ..+.+..++..+|..+..+...........
T Consensus 28 ~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~~~~~l~~~~ 107 (385)
T 2q13_A 28 EDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQL 107 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555565666666666777777766543 1 223456778899999999887777777777
Q ss_pred HHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 269 LMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 269 ~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
...+..||..++. .+..+++.=+.=++...+|+.+.. +...+...++ .+....+++.++..++..|.
T Consensus 108 ~~~~~~PL~~f~~~di~~~ke~kk~fek~~~~yd~al~-------k~~~~~k~k~-----~e~~~~ea~~~l~~~rk~f~ 175 (385)
T 2q13_A 108 ADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAIN-------RYSRLSKKRE-----NDKVKYEVTEDVYTSRKKQH 175 (385)
T ss_dssp HHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTCCSSSC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcCCCCCc-----hhhHHHHHHHHHHHHHHHHH
Confidence 7788889888875 455555532222223334443332 2222221111 11233456677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcc
Q 043025 348 TIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAW-RTLLPKLEACS 401 (403)
Q Consensus 348 ~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~W-e~~~~~~~~~~ 401 (403)
...-.....|...+..+..++-..|..|+..++.|+++..++| +++.+.++.+.
T Consensus 176 ~~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~~~~~~~~~~~l~ 230 (385)
T 2q13_A 176 QTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIG 230 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877778888988999999999999999999999999999 48888776653
|
| >1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=0.00015 Score=62.49 Aligned_cols=201 Identities=12% Similarity=0.092 Sum_probs=132.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|.+++.--+.+++....++.|.+.++++..+...++.....||..|..+|.-++ .++..|..+|++...+...-
T Consensus 5 vD~EL~~klE~l~~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~p-~l~~~f~~~~~~~r~~~k~g---- 79 (224)
T 1i4d_A 5 VDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP-ELQEEFGYNAETQKLLCKNG---- 79 (224)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHHHHH----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-HHHHHHHHHHHHHHHHHHhH----
Confidence 4777777777788888889999999999999999999999999999999998874 57778888887776654321
Q ss_pred HHHHHhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIK-ATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k-~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
..+..+|+.++..+.-+. -++.+=..-+..|+.+.-+.......++.+.....+ ..--..++.+....+.++.
T Consensus 80 ----~~Ll~~L~~f~s~l~T~~~kaI~DT~lTIk~ye~aR~EY~ay~~~~ee~~~~~~~--~~~l~rve~~q~~~~~ak~ 153 (224)
T 1i4d_A 80 ----ETLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRD--AGTRGRLESAQATFQAHRD 153 (224)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHhHhccHHHHHHHHHHHHhHhHHHHHhhHHHhhccccc--ccchhhHHHHHHHHHHHHH
Confidence 223344444444332221 122222222333444433333333333443311100 0001123346677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 345 RFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
+|+.+...+..=+.-.+..|..+|...|.-|......|+..+.+..+..+..+
T Consensus 154 kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~~~~~f 206 (224)
T 1i4d_A 154 KYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQF 206 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998777544
|
| >4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0018 Score=62.14 Aligned_cols=193 Identities=11% Similarity=0.077 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHH
Q 043025 193 LKHYIFELENHLAEAQKHAYRLVKRH-------RELGESLSDFGKAAKLLGACE------GDALGKAFSELGMKSEALSV 259 (403)
Q Consensus 193 ~~~~i~~le~~l~~l~k~~~~l~k~~-------~~l~~~~~~l~~~~~~l~~~e------~~~L~~~~~~~~~~~~~~~~ 259 (403)
+|..+..++..+..+.+...++++.- ..+..+...|+..+..++... ...+...+..++.....+..
T Consensus 42 FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~ 121 (407)
T 4h8s_A 42 TRSLLSVFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNL 121 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544 444444444554444332211 12455667788888888877
Q ss_pred HHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHH
Q 043025 260 KLQREAHQLLMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAE 338 (403)
Q Consensus 260 ~~~~~~~~~~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~ 338 (403)
............+.+||..++. .+..+++.=+.=+.....|+.+.. +...+...++. + ....+...+
T Consensus 122 ~~~~L~~~~~~~i~~pL~~f~k~di~~~ke~kK~Fek~~~~Yd~~l~-------Ky~~~~k~k~~--~---~~~~e~~~~ 189 (407)
T 4h8s_A 122 LHTELAKQLADTMVLPIIQFREKDLTEVSTLKDLFGLASNEHDLSMA-------KYSRLPKKKEN--E---KVKTEVGKE 189 (407)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHSCSTTCC--H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCc--h---HHHHHHHHH
Confidence 7666677777778888888765 355555432222223333443333 22333222211 1 111233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q 043025 339 SEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWR-TLLPKL 397 (403)
Q Consensus 339 ~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We-~~~~~~ 397 (403)
+..++..|....-.....+..++..+..++-..|..|...+..|+++..+.|. .+.+.+
T Consensus 190 l~~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~~~~~~~~~ 249 (407)
T 4h8s_A 190 VAAARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFSKRMDSFL 249 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777777788888888899999999999999999999998873 344443
|
| >2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.028 Score=50.48 Aligned_cols=77 Identities=12% Similarity=0.148 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 324 KVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 324 ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
|+.++++++.......+.++..|..--..+...+..++..|...++.+|..|+...-..........+.+...++++
T Consensus 171 k~~ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le~~R~~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 247 (276)
T 2v0o_A 171 KSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIKEIHLQIGQVHEEFINNMANT 247 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhC
Confidence 34445555555555666667777655556777888889999999999999999877766666666666666665544
|
| >2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.053 Score=49.36 Aligned_cols=159 Identities=13% Similarity=0.141 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-H--------------HHHHHHHHHHHHHHHHHHH
Q 043025 242 ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSI-K--------------ATIAERANAFRQQCELAET 306 (403)
Q Consensus 242 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~-k--------------~~l~~R~~~~~~~~~~~~~ 306 (403)
.+..++..+-...+.++......+..+...+.++|..+....... | +....-.++...|...+..
T Consensus 73 t~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e 152 (305)
T 2efl_A 73 TSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKE 152 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555666666554433211 1 1111111222334444444
Q ss_pred HHHHHHhHHHhcc---cCcchHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Q 043025 307 MKLKEINLDKLML---TRSDKVGEAEIEYKELKAESEDSTRRFET---------------IVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 307 l~~k~~~l~kl~~---~~~~ki~~l~~~i~~~~~~~~~~~~~~~~---------------i~~~~~~El~~f~~~r~~~l 368 (403)
+++.+...+++.. ....++++++.+..+....++.++++|.. ---.+...+..++..|...+
T Consensus 153 ~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r~~~l 232 (305)
T 2efl_A 153 ADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRM 232 (305)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333321 11234555555555554444444444433 23334456778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 369 GIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 369 ~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
+.+|..|+.............-+.+...++.+
T Consensus 233 k~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i 264 (305)
T 2efl_A 233 GESMKTYAEVDRQVIPIIGKCLDGIVKAAESI 264 (305)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 99999999987777666666666666665544
|
| >3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.072 Score=48.99 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhc
Q 043025 325 VGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQ-ARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 325 i~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~q-i~~~~~~~~~We~~~~~~~~~ 400 (403)
+..+++++...-..++..+..|..--..+...+..++..|...|+.+|..|+... +..........+.+...++++
T Consensus 199 ~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~~~~~~~~~~~~~~~~~e~~~~~i~~i 275 (320)
T 3m3w_A 199 AEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQHLDLSSSDKFHELHRDLQQSIEAA 275 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHhc
Confidence 3445566666666677777777766666778888899999999999999998632 111244444555555555543
|
| >3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.047 Score=46.84 Aligned_cols=140 Identities=18% Similarity=0.192 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 043025 202 NHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVR 281 (403)
Q Consensus 202 ~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ 281 (403)
..|..|-+.-..++.....++.+....+.++..|+..+.+.|+++..++|..+..++.... .|...+..|..
T Consensus 23 r~L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~~edddl~DIsdklgvLl~e~ge~e~--------~~a~~~d~yR~ 94 (234)
T 3plt_A 23 RKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQD--------QFIDKYDQYRV 94 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 3444555555666777777888888888899999988877788777777777666665433 34445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 282 AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM--LTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEE 356 (403)
Q Consensus 282 ~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~--~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~E 356 (403)
.+.++++ |+..++....-.+++. .++.+|+ .....|+..|++++..++.+.-.++..+..++....+|
T Consensus 95 ~LK~IR~----~E~svqp~R~~R~~l~---~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKE 164 (234)
T 3plt_A 95 TLKSIRN----IEASVQPSRDRKEKIT---DEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITREKLKA 164 (234)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHhhHHHHHHHHHH---HHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHH
Confidence 5555433 3433333322222222 2223333 33456888888888888887666666666665544333
|
| >2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.057 Score=47.67 Aligned_cols=188 Identities=12% Similarity=0.074 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 199 ELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-----GDALGKAFSELGMKSEALSVKLQREAHQLLMNFE 273 (403)
Q Consensus 199 ~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (403)
.+...+.+|...+.++.+..+.+..+...|..+|..+++.- ...|+.++..+......+..............|.
T Consensus 26 ~~~P~~e~li~~~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li 105 (253)
T 2ykt_A 26 QFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELL 105 (253)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTH
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666677777777777777777777777642 2467777777777776666665666666666667
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc----cc-Ccch-HHHHHHHHHHHHHHHHHHHHHH
Q 043025 274 EPLKDYVRA-VQSIKATIAERANAFRQQCELAETMKLKEINLDKLM----LT-RSDK-VGEAEIEYKELKAESEDSTRRF 346 (403)
Q Consensus 274 e~l~~~~~~-~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~----~~-~~~k-i~~l~~~i~~~~~~~~~~~~~~ 346 (403)
.||..-+.. ...+.. +.. ....+|....+.+.+....+-|++ ++ +..+ ...+..-++.++.+...++.-.
T Consensus 106 ~pL~~kie~d~K~v~~-~~K--~~~~e~k~~~~~l~K~~~e~~kl~KK~k~gk~~~~~~~~~~~~~e~v~~~~~~le~~~ 182 (253)
T 2ykt_A 106 TQLEQKVELDSRYLSA-ALK--KYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYV 182 (253)
T ss_dssp HHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHH-HHH--HHHHHHHHhHhHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665442 222222 222 233455566666666655555554 12 2111 1222233333333322222222
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 347 ETIVR-LMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLL 394 (403)
Q Consensus 347 ~~i~~-~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~ 394 (403)
..... .+..|-.|| --|-..+..++...+.+|.+.....+.-+
T Consensus 183 ~~~lr~aL~EERrRy-----cflv~~~~~v~~~~~~~h~~~~~~L~~~l 226 (253)
T 2ykt_A 183 SDGYKTALTEERRRF-----CFLVEKQCAVAKNSAAYHSKGKELLAQKL 226 (253)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222 244555555 44556666666666667766544433333
|
| >3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.17 Score=49.47 Aligned_cols=161 Identities=11% Similarity=0.127 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHH-HH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---------HHHH
Q 043025 219 RELGESLSDFGKAAKL-LG-ACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAV---------QSIK 287 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~-l~-~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~---------~s~k 287 (403)
.+.+..|..|+..+.. +. ..+...+..++..+-...+.++......+..+...+.++|..+.... ..-|
T Consensus 53 ~eYAk~L~kLakk~~~~~~~~~e~gtl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK 132 (486)
T 3haj_A 53 KAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETK 132 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4445555555554322 11 12223566677777677777777666666666666777776665422 1111
Q ss_pred HH-------HHHH-------HHHHHHHHHHHHHHHHHHHhHHHhc---ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 288 AT-------IAER-------ANAFRQQCELAETMKLKEINLDKLM---LTRSDKVGEAEIEYKELKAESEDSTRRFETIV 350 (403)
Q Consensus 288 ~~-------l~~R-------~~~~~~~~~~~~~l~~k~~~l~kl~---~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~ 350 (403)
.+ .+.. .++...|...+...+..+.+..+.. +.....+++++..+.++..+++.++++|....
T Consensus 133 ~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v 212 (486)
T 3haj_A 133 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSL 212 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111 1112223333333333222222221 12234566666777776666666666654443
Q ss_pred H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 351 R--------------LMNEEIVRFQEQKTLDMGIAFHNFSKGQ 379 (403)
Q Consensus 351 ~--------------~~~~El~~f~~~r~~~l~~~l~~~a~~q 379 (403)
. .+...+..++..|...|+.+|..|+...
T Consensus 213 ~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~~~l 255 (486)
T 3haj_A 213 KELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHL 255 (486)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3445566666677777777777776543
|
| >2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.11 Score=47.21 Aligned_cols=159 Identities=11% Similarity=0.146 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Q 043025 242 ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIK---------------ATIAERANAFRQQCELAET 306 (403)
Q Consensus 242 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k---------------~~l~~R~~~~~~~~~~~~~ 306 (403)
.+..++..+-...+.++......+..+...+.++|..+.......+ ++...-.++...|..++..
T Consensus 66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e 145 (301)
T 2efk_A 66 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCRE 145 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555556666665544322211 1111122223334444444
Q ss_pred HHHHHHhHHHhcc---cCcchHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Q 043025 307 MKLKEINLDKLML---TRSDKVGEAEIEYKELKAESEDSTRRFET---------------IVRLMNEEIVRFQEQKTLDM 368 (403)
Q Consensus 307 l~~k~~~l~kl~~---~~~~ki~~l~~~i~~~~~~~~~~~~~~~~---------------i~~~~~~El~~f~~~r~~~l 368 (403)
+++.+...++..+ .....+++++..+.+....++.++++|.. --..+...+..++..|...|
T Consensus 146 ~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ~lee~r~~~l 225 (301)
T 2efk_A 146 AEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRL 225 (301)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333333221 11223455555555555555555554432 22234456667777888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 369 GIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 369 ~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
+.+|..|+..............+.+...++++
T Consensus 226 k~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i 257 (301)
T 2efk_A 226 GAGYGLLSEAELEVVPIIAKCLEGMKVAANAV 257 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 99999999987777776666777776666554
|
| >3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.19 Score=46.76 Aligned_cols=180 Identities=12% Similarity=0.151 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---------HHHHH
Q 043025 219 RELGESLSDFGKAAKLLG--ACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRA---------VQSIK 287 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~l~--~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~---------~~s~k 287 (403)
.+.+..+..|+..+.... ..+...+..++..+-...+.++......+..+...+.++|..+... ...-|
T Consensus 60 ~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K 139 (350)
T 3aco_A 60 KAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETK 139 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSBHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444555555555443221 1233456667777777777777777777777777777777766432 00001
Q ss_pred HH---H----HHHHHH-------HHHHHHHHHHHHHHHHhHHHhcc---cCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 288 AT---I----AERANA-------FRQQCELAETMKLKEINLDKLML---TRSDKVGEAEIEYKELKAESEDSTRRFETIV 350 (403)
Q Consensus 288 ~~---l----~~R~~~-------~~~~~~~~~~l~~k~~~l~kl~~---~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~ 350 (403)
.+ + +..... -..|...+...+..+.+.++..+ ..+..+++++..+.++..+++.++++|....
T Consensus 140 ~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v 219 (350)
T 3aco_A 140 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSL 219 (350)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1 001111 11222222222222222111111 1123455666666666655555555544333
Q ss_pred H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhh
Q 043025 351 R--------------LMNEEIVRFQEQKTLDMGIAFHNFSKGQARLA--SSIADAWRTLLPKLEA 399 (403)
Q Consensus 351 ~--------------~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~--~~~~~~We~~~~~~~~ 399 (403)
. .+...+..++..|...|+..|..|+.. +... ..+....+.+...++.
T Consensus 220 ~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~-l~~~~~~~~~~~~~~l~~~i~~ 283 (350)
T 3aco_A 220 KELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH-LDLSNVAGYKAIYHDLEQSIRA 283 (350)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccchhHHHHHHHHHHHHHh
Confidence 3 334455566667777777777777766 2222 2344444444444443
|
| >3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.18 Score=45.59 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQ-ARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~q-i~~~~~~~~~We~~~~~~~~ 399 (403)
.++..+++++...-...+..+..|..--..+...+..++..|...|+.+|..|+... +.....+...-+.+...+++
T Consensus 184 ~~~~~a~~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q~lee~Ri~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 261 (290)
T 3i2w_A 184 DQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKVQSLPQIYEEFSHTINN 261 (290)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHh
Confidence 346666777777777777777777777777888889999999999999999999764 22222333444555544444
|
| >3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.24 Score=45.25 Aligned_cols=180 Identities=13% Similarity=0.142 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-------------
Q 043025 219 RELGESLSDFGKAAKLL--GACEGDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAV------------- 283 (403)
Q Consensus 219 ~~l~~~~~~l~~~~~~l--~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~------------- 283 (403)
.+.+..+..|+...... ...+.+.+..++..+-...+.++......+..+...+.++|..+....
T Consensus 60 ~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ke~k 139 (312)
T 3abh_A 60 KAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETK 139 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSBHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 44455555555544321 112334566677777777777777776777777767777776654321
Q ss_pred ---HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhHHHhccc---C--------------cchHHHHHHHHHHHH
Q 043025 284 ---QSIKATIAER-------ANAFRQQCELAETMKLKEINLDKLMLT---R--------------SDKVGEAEIEYKELK 336 (403)
Q Consensus 284 ---~s~k~~l~~R-------~~~~~~~~~~~~~l~~k~~~l~kl~~~---~--------------~~ki~~l~~~i~~~~ 336 (403)
..+..+.+.. .++-..|...+..++..+.+.++..+. . ..++..+.+++...-
T Consensus 140 ~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v 219 (312)
T 3abh_A 140 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSL 219 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 112223333333333332222221110 0 112344455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhh
Q 043025 337 AESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLA--SSIADAWRTLLPKLEA 399 (403)
Q Consensus 337 ~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~--~~~~~~We~~~~~~~~ 399 (403)
..++..+..|..--..+...+..++..|...|+..|..|+.. +... ..+...-+.+...++.
T Consensus 220 ~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~-~~~~~~~~~~~~~~~l~~~i~~ 283 (312)
T 3abh_A 220 KELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH-LDLSNVAGYKAIYHDLEQSIRA 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCGGGSTTHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccchHHHHHHHHHHHHHh
Confidence 556666666655555566677778888888888888888877 2221 2344444445544443
|
| >2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.19 Score=44.11 Aligned_cols=186 Identities=13% Similarity=0.153 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 043025 202 NHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE------GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEP 275 (403)
Q Consensus 202 ~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e------~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 275 (403)
..+.++.+.+.++.+..+.+..+...|..+|..+++.- +..|+.++..+......+-.............|..|
T Consensus 31 P~~e~lv~~g~ky~~al~~~~~a~~af~Da~qKvad~A~~s~g~s~elG~~L~~i~~~hr~ie~~l~~~~k~~~~eli~p 110 (253)
T 2d1l_A 31 PVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTREIGSALTRMCMRHRSIEAKLRQFSSALIDCLINP 110 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555556666665522 235666666666666555555555555555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc----c----cCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 276 LKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM----L----TRSDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 276 l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~----~----~~~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
|..-+..-.-.-..+.+. ...++..+...+.++...+.|++ . +..+--..+..+++.++.....++.-..
T Consensus 111 Le~k~e~d~k~~~~~~K~--~~~~~k~~r~elkk~~~~~~k~qkK~rk~~~~gk~~~~~~l~~a~q~v~~~~~~le~~~~ 188 (253)
T 2d1l_A 111 LQEQMEEWKKVANQLDKD--HAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLLLEETEK 188 (253)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGTTTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 655444322111122222 22345555666666555554443 1 1111112333344333333222222111
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Q 043025 348 T-IVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQAR------LASSIADAWRTLL 394 (403)
Q Consensus 348 ~-i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~------~~~~~~~~We~~~ 394 (403)
. +...+.+|-.|| --|-+.+..++..++. +++..+..|..+.
T Consensus 189 ~~~r~AL~EERrRy-----cflv~~l~pv~~~e~~~~~e~~~l~~~l~~~~~~~ 237 (253)
T 2d1l_A 189 QAVRKALIEERGRF-----CTFISMLRPVIEEEISMLGEITHLQTISEDLKSLT 237 (253)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHGGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 1 122244555555 4566666667777664 6777777787654
|
| >4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.32 Score=46.27 Aligned_cols=77 Identities=9% Similarity=0.059 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLM---------------NEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIA 387 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~---------------~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~ 387 (403)
..+++++..+.+...++..++++|......+ ...+..++..|...|+.+|..|+...-.......
T Consensus 164 ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~lEe~Ri~~lk~~L~~~~~~~~~~~~~~~ 243 (406)
T 4dyl_A 164 KDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEEMACILKEILQEYLEISSLVQDEVV 243 (406)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3456677777777777777777776433222 3344556667777777777777776554444444
Q ss_pred HHHHHHHHHhhh
Q 043025 388 DAWRTLLPKLEA 399 (403)
Q Consensus 388 ~~We~~~~~~~~ 399 (403)
...+.+...+++
T Consensus 244 ~~~~~l~~~i~~ 255 (406)
T 4dyl_A 244 AIHREMAAAAAR 255 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
|
| >3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.49 Score=42.40 Aligned_cols=136 Identities=11% Similarity=0.069 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccC
Q 043025 242 ALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTR 321 (403)
Q Consensus 242 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~ 321 (403)
.+..++..+-...+..+......+..+...+..+|+.|..--.. +.....+.+++..+...++.. +.+.
T Consensus 119 ~l~~~W~~v~~e~e~~a~~H~~la~~L~~ev~~pL~~~~e~~~~----~~e~~~l~~~L~~~ak~le~~-------~kk~ 187 (287)
T 3g9g_A 119 ELRNVWDTVIEELKSDLKSSTEYYNTLDQQVVRELKESVENNTS----WRESKDLHSKLSKNAASIEHY-------SKNN 187 (287)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSSSSCHH----HHHHHHHHHHHHHHHHHHHHC-------SSCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHH----HHHHHHHHHHHHHHHHHHHHH-------HhhH
Confidence 46666777766777777776666777766777777777632111 112222333444444433332 2111
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 322 SDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 322 ~~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
+ +...++.++..|+.=...+-.-+..++..|..-|+++|..|+...-.+..+..+.=++++..+.++
T Consensus 188 -~-----------a~~~le~a~~qWes~aP~~fe~fQ~lEEeRL~~Lkd~L~~y~~~~sd~~~~~~~~~E~~~~~ll~~ 254 (287)
T 3g9g_A 188 -E-----------NSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTTKECETVMTKFLAF 254 (287)
T ss_dssp -S-----------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 122466667777776677888888999999999999999999999999999888888887766543
|
| >2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.72 Score=42.48 Aligned_cols=138 Identities=10% Similarity=0.139 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----------------HHHHHHHHH-------HHHH
Q 043025 241 DALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQ----------------SIKATIAER-------ANAF 297 (403)
Q Consensus 241 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~----------------s~k~~l~~R-------~~~~ 297 (403)
..+..++..+-...+.++......+..+...+.++|..+..... .+..+.+.. .++.
T Consensus 75 gtl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ke~K~~~~~~~k~~k~~~~~~~~l~KaK 154 (337)
T 2x3v_A 75 GSLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAK 154 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSBHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666667666543210 011111111 1122
Q ss_pred HHHHHHHHHHHHHHHhHHHhcc---cCcchHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHH
Q 043025 298 RQQCELAETMKLKEINLDKLML---TRSDKVGEAEIEYKELKAESEDSTRRFETI--------------VRLMNEEIVRF 360 (403)
Q Consensus 298 ~~~~~~~~~l~~k~~~l~kl~~---~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i--------------~~~~~~El~~f 360 (403)
..|...+...+..+...++.++ .....+++++..+.++..++..++++|... -..+...+..+
T Consensus 155 k~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~l 234 (337)
T 2x3v_A 155 KAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQF 234 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2333333333333333333321 123445556666666655555555554432 23344455566
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 043025 361 QEQKTLDMGIAFHNFSKG 378 (403)
Q Consensus 361 ~~~r~~~l~~~l~~~a~~ 378 (403)
+..|...|+.+|..|+..
T Consensus 235 e~~Rl~~lk~~l~~~~~~ 252 (337)
T 2x3v_A 235 EEKRLVFLKEVLLDIKRH 252 (337)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666777777777777664
|
| >1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 | Back alignment and structure |
|---|
Probab=90.39 E-value=8.1 Score=33.32 Aligned_cols=42 Identities=7% Similarity=0.110 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDF 228 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l 228 (403)
...|......+..+...++........+......++.++.++
T Consensus 43 ~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~~~~l~~~~~~l 84 (244)
T 1uru_A 43 LNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEI 84 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555556666666554
|
| >3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus} | Back alignment and structure |
|---|
Probab=86.27 E-value=15 Score=31.30 Aligned_cols=119 Identities=12% Similarity=0.115 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 197 IFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE-----GDALGKAFSELGMKSEALSVKLQREAHQLLMN 271 (403)
Q Consensus 197 i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e-----~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (403)
++.+...|.+|......+.+..+.+..+-..|-.++..+++.- +..|+.++-.++.....+..............
T Consensus 22 meqfnP~l~nlv~lg~~Y~kAl~a~~~A~~~y~dA~~Kige~A~~S~~skeLG~vL~qis~~hR~i~~~le~~~k~f~~e 101 (222)
T 3ok8_A 22 MEQFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIQKIGEQALQSSTSQILGEILVQMSDTQRHLNSDLEVVVQTFHGD 101 (222)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555566666666666555666666665533 23677777777777777666555555555455
Q ss_pred hhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Q 043025 272 FEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM 318 (403)
Q Consensus 272 ~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~ 318 (403)
+.-||..=+. ...-+.+. +.....++....+.+++...++.|++
T Consensus 102 lI~pLE~k~e~D~k~i~~~---~K~y~~e~k~~~~~leK~~~elkK~~ 146 (222)
T 3ok8_A 102 LLQHMEKNTKLDMQFIKDS---CQHYEIEYRHRAANLEKCMSELWRME 146 (222)
T ss_dssp THHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 5555544332 12222221 22344556666666666666666664
|
| >3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.78 E-value=23 Score=32.34 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043025 330 IEYKELKAESEDSTRRFETIVRL 352 (403)
Q Consensus 330 ~~i~~~~~~~~~~~~~~~~i~~~ 352 (403)
.+++++...++.+..+.....+.
T Consensus 192 k~~eK~~~k~~k~~~~~~~a~~~ 214 (350)
T 3aco_A 192 EQLKKLQDKIEKCKQDVLKTKEK 214 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544444
|
| >3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=84.56 E-value=15 Score=29.97 Aligned_cols=116 Identities=11% Similarity=0.145 Sum_probs=72.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHH
Q 043025 267 QLLMNFEEPLKDYVRAVQSIKATIAERANAFR---QQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDST 343 (403)
Q Consensus 267 ~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~---~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~ 343 (403)
+++..+++.+..|...+..+|--+..-...-. .|....+.|++++ ++.+.|..-++++..++
T Consensus 98 reiarllekiqkyfQ~IEtlK~ql~nf~e~RLiYDHYKlKvdELEK~~---------------KdSeKI~RNQsKLssAE 162 (294)
T 3caz_A 98 REIARLLEKIQKYRQEIEEIKKEYKETDKYRERYDHYKVKLDNLEKKN---------------KDQERIERNQQKFKDAE 162 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHhcc---------------chHHHHHHhHHHhhhHH
Confidence 46677888889999988888876655443322 2322222222221 23345555666667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 344 RRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 344 ~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
..+..++..+..-+...-..+...|..+-...-..|++|++.+-..-..+.|.+
T Consensus 163 taYkqvcsDiInkMnkll~n~~riineaasavwstqlqyakaleaaanpivpyl 216 (294)
T 3caz_A 163 AAYSSVCADLIQKMETVWKKHVSIFAEAASAVWSTQLQYAKALEAAANPIVPYL 216 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhh
Confidence 777777777777777776666677777777777778888776655544444433
|
| >3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.96 E-value=21 Score=30.47 Aligned_cols=155 Identities=11% Similarity=0.149 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 043025 206 EAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE--GDALGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAV 283 (403)
Q Consensus 206 ~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e--~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~ 283 (403)
.+.+...++++..+.+..++..+|......+..- ++. .. =..+++..++++. +...+.+....|....
T Consensus 20 e~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~-~e-dddl~DIsdklgv--------Ll~e~ge~e~~~a~~~ 89 (234)
T 3plt_A 20 ELARKLSQLVKTEKGVLRAMEVVASERREAAKQLSLWGA-DN-DDDVSDVTDKLGV--------LIYELGELQDQFIDKY 89 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TS-CHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-CchHHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 4667778888888888888888776665554322 110 00 0122233333322 3344555666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 284 QSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAE------IEYKELKAESEDSTRRFETIVRLMNEEI 357 (403)
Q Consensus 284 ~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~------~~i~~~~~~~~~~~~~~~~i~~~~~~El 357 (403)
..++..|+.-. +.+..+.-.+...+++. +++.+++ ..|..+++++..++.+. ......|
T Consensus 90 d~yR~~LK~IR-------~~E~svqp~R~~R~~l~----~~I~kLk~k~P~s~kl~~LeqELvraEae~----lvaEAqL 154 (234)
T 3plt_A 90 DQYRVTLKSIR-------NIEASVQPSRDRKEKIT----DEIAHLKYKDPQSTKIPVLEQELVRAEAES----LVAEAQL 154 (234)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHCTTCTHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHhhHHHHHHHHHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHh----hHHHHHH
Confidence 66555554322 22222222222223332 4555554 24455555554444442 1122334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 358 VRFQEQKTLDMGIAFHNFSKGQARLASSIAD 388 (403)
Q Consensus 358 ~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~ 388 (403)
..+ +...|+.++.--....+++.++++=
T Consensus 155 ~n~---kR~~lKEa~~~~f~Al~E~aEK~~i 182 (234)
T 3plt_A 155 SNI---TREKLKAAYSYMFDSLRELSEKFAL 182 (234)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 4466777766666666666666543
|
| >2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A | Back alignment and structure |
|---|
Probab=81.82 E-value=26 Score=30.58 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhh
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGE------SLSDFGKAAKLLGACE 239 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~------~~~~l~~~~~~l~~~e 239 (403)
.|-|+++-.--..|+.++..+......+.+..+.++. .-.++|.++..++..-
T Consensus 28 ~P~~e~li~~~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs~elG~~L~~i~~~~ 86 (253)
T 2ykt_A 28 NPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVH 86 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH
Confidence 5667777777777788887777777666666655554 3467888887776543
|
| >2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.40 E-value=29 Score=30.28 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 330 IEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTL 393 (403)
Q Consensus 330 ~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~ 393 (403)
.+++++..+++.+++++......+..--.+| .....++-..|+++-...+.+.+..+..+..+
T Consensus 163 k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~~~-~~~~~~~~~~lQ~le~~R~~~lk~~l~~~~~~ 225 (276)
T 2v0o_A 163 REIEKAAVKSKKATDTYKLYVEKYALAKADF-EQKMTETAQKFQDIEETHLIHIKEIIGSLSNA 225 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666555444444444455 23334444455555555555555554444433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 403 | ||||
| d1ocsa_ | 132 | d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast | 3e-30 | |
| d1xtea_ | 116 | d.189.1.1 (A:) Serine/threonine-protein kinase Sgk | 5e-22 | |
| d1kmda_ | 117 | d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces | 1e-20 | |
| d1h6ha_ | 143 | d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo | 6e-19 | |
| d1kq6a_ | 140 | d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo | 6e-16 | |
| d1urua_ | 217 | a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila | 9e-12 |
| >d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Sorting nexin grd19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 111 bits (278), Expect = 3e-30
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 23 QPYLSVSVTDPVK----LGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRL 78
+ +L + V +P + + Y +I +TN P + V RRYSDF + R L
Sbjct: 4 ENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCL 63
Query: 79 FEKYKGIFIPPLPEKSAVEK----FRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLK 133
++ + P + K RFS E IE RRQGL+ ++ +A HP LQ S+ L
Sbjct: 64 IKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLV 123
Query: 134 TFLQADE 140
F++A++
Sbjct: 124 RFIEAEK 130
|
| >d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Serine/threonine-protein kinase Sgk3, Cisk species: Mouse (Mus musculus) [TaxId: 10090]
Score = 88.2 bits (218), Expect = 5e-22
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIF 86
SVS+ + + + Y+V+ E+ V RRY++F L + L +++ +
Sbjct: 6 SVSIPSSDEHREKKKRFTVYKVLVSVGRSEWF-----VFRRYAEFDKLYNSLKKQFPAMA 60
Query: 87 IPPLPEKSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQSEDLKTFLQADE 140
+ ++ F +FI+ RR GL+ F+ + +PEL D++ FLQ D
Sbjct: 61 LKIPAKRIF--GDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDS 112
|
| >d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Vam7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.3 bits (208), Expect = 1e-20
Identities = 31/123 (25%), Positives = 47/123 (38%), Gaps = 21/123 (17%)
Query: 26 LSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGI 85
L + V D Y+ Y V T P K + +RYS+F L+ RL
Sbjct: 6 LRIKVDDVKI----NPKYVLYGVST---------PNKRLYKRYSEFWKLKTRLERDVGST 52
Query: 86 FIPPLPEKSAVEKF-----RFSAEFIEMRRQGLDLFVNRIASHPE---LQQSEDLKTFLQ 137
PEK V E I+ RR GL+ F+N + + + ++ + FLQ
Sbjct: 53 IPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQ 112
Query: 138 ADE 140
+
Sbjct: 113 LSK 115
|
| >d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p40phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.5 bits (198), Expect = 6e-19
Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 21/150 (14%)
Query: 5 EQQRSASGSSQSPRSPSSQPYLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIV 64
+Q R+ S Q P + +S ++ D + G ++ + + KT G + ++
Sbjct: 4 QQLRAESDFEQLPDDVA----ISANIADIEE-KRGFTSHFVFVIEVKTK----GGSKYLI 54
Query: 65 IRRYSDFVWLRDRLFEKY--------KGIFIPPLPEKSAVEKFRFSAEFIEMRRQGLDLF 116
RRY F L+ +L E++ +P LP K E EMR L+ +
Sbjct: 55 YRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKV---YVGVKQEIAEMRIPALNAY 111
Query: 117 VNRIAS-HPELQQSEDLKTFLQADEETMER 145
+ + S + ED++ F E+
Sbjct: 112 MKSLLSLPVWVLMDEDVRIFFYQSPYDSEQ 141
|
| >d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p47phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.1 bits (176), Expect = 6e-16
Identities = 25/138 (18%), Positives = 47/138 (34%), Gaps = 15/138 (10%)
Query: 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIF 86
+++ K Q Y+ Y + K EK+V RR+++ L E +
Sbjct: 7 HIALLGFEKRFVPSQHYV-YMFLVKWQ----DLSEKVVYRRFTEIYEFHKTLKEMFPIEA 61
Query: 87 IPPLPEKSAVEK-----FRFSAEFIEMRRQGLDLFVNRIASHPE-LQQSEDLKTFLQADE 140
PE + + E R+ L + + + S P + + L F +
Sbjct: 62 GAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRP 121
Query: 141 ETMERLRSQDTGYFKKKP 158
+ ++ T KKP
Sbjct: 122 DDLK----LPTDNQTKKP 135
|
| >d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: BAR domain domain: Amphiphysin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 62.0 bits (150), Expect = 9e-12
Identities = 21/215 (9%), Positives = 66/215 (30%), Gaps = 13/215 (6%)
Query: 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAF 247
++ + + QK ++ R + + + + +
Sbjct: 12 EIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSG----Y 67
Query: 248 SELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETM 307
L ++ A AH+L PL Y +K + +R +
Sbjct: 68 DALQAQTGASESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSF 127
Query: 308 KLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLD 367
+ L + + +++ + + + E++ R +E + +++E+ + + L
Sbjct: 128 Q---------NLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILF 178
Query: 368 MGIAFHNFSKGQARLASSIADAWRTLLPKLEACSS 402
+ + + A + L ++ ++
Sbjct: 179 LVTNLQTLFATEQVFHNETAKIYSELEAIVDKLAT 213
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 403 | |||
| d1ocsa_ | 132 | Sorting nexin grd19 {Baker's yeast (Saccharomyces | 99.94 | |
| d1xtea_ | 116 | Serine/threonine-protein kinase Sgk3, Cisk {Mouse | 99.9 | |
| d1kmda_ | 117 | Vam7p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.88 | |
| d1h6ha_ | 143 | p40phox NADPH oxidase {Human (Homo sapiens) [TaxId | 99.86 | |
| d1kq6a_ | 140 | p47phox NADPH oxidase {Human (Homo sapiens) [TaxId | 99.82 | |
| d1urua_ | 217 | Amphiphysin {Fruit fly (Drosophila melanogaster) [ | 99.69 | |
| d1i4da_ | 200 | Arfaptin, Rac-binding fragment {Human (Homo sapien | 99.63 | |
| d1y2oa1 | 248 | BAP2/IRSp53 N-terminal domain {Human (Homo sapiens | 98.94 | |
| d2d4ca1 | 237 | Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d2elba1 | 268 | DCC-interacting protein 13-alpha, APPL1 {Human (Ho | 98.69 | |
| d2efla1 | 288 | Formin-binding protein 1, FNBP1 {Human (Homo sapie | 97.71 | |
| d2efka1 | 279 | CDC42-interacting protein 4, CIP4 {Human (Homo sap | 97.02 | |
| d1i4da_ | 200 | Arfaptin, Rac-binding fragment {Human (Homo sapien | 94.82 | |
| d1y2oa1 | 248 | BAP2/IRSp53 N-terminal domain {Human (Homo sapiens | 82.33 |
| >d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Sorting nexin grd19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.2e-27 Score=192.54 Aligned_cols=118 Identities=35% Similarity=0.638 Sum_probs=104.1
Q ss_pred CCCcEEEEEcCceEeC----CCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcC-----CccCCCCCC
Q 043025 22 SQPYLSVSVTDPVKLG----NGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYK-----GIFIPPLPE 92 (403)
Q Consensus 22 ~~~~~~v~V~~~~~~~----~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p-----~~~iP~lP~ 92 (403)
|..++.|.|+||+++. +|.++||+|.|.++++.|.|.+..|.|+||||||.|||+.|...+| +..+||+|+
T Consensus 3 p~~~~~i~V~dP~~~~~~~~~~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~~~~~p~~p~ 82 (132)
T d1ocsa_ 3 PENFLEIEVHNPKTHIPNGMDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPG 82 (132)
T ss_dssp SSCCEEEEEEEEEEECCCSTTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTT
T ss_pred CCCeEEEEEcCCcEeecCCCCCccCeEEEEEEEEecCCCCCCceEEEEeeHHHHHHHHHHHHHhcccccCcccccCCCcc
Confidence 4468999999999863 3457899999999999999999999999999999999999998764 567889999
Q ss_pred CccccccCCCHHHHHHHHHHHHHHHHHHhcCccccC-ChhhhcccccCh
Q 043025 93 KSAVEKFRFSAEFIEMRRQGLDLFVNRIASHPELQQ-SEDLKTFLQADE 140 (403)
Q Consensus 93 k~~~~~~~~~~~~i~~R~~~L~~fl~~~~~~~~l~~-~~~~~~FL~~~~ 140 (403)
+..++. +++++|+++||.+||.||+.|+.||.|++ ++.|+.||+.++
T Consensus 83 ~~~~~~-~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~~s~~l~~FLe~~~ 130 (132)
T d1ocsa_ 83 KILLSN-RFSNEVIEERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAEK 130 (132)
T ss_dssp CCCSSC-TTSHHHHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHCSS
T ss_pred cccccc-cCCHHHHHHHHHHHHHHHHHHHcCHHHHhCCHHHHhcCCccc
Confidence 887752 57999999999999999999999999976 788999998775
|
| >d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Serine/threonine-protein kinase Sgk3, Cisk species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=6.5e-24 Score=166.62 Aligned_cols=108 Identities=27% Similarity=0.480 Sum_probs=96.6
Q ss_pred EEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccccCCCHHHH
Q 043025 27 SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEKFRFSAEFI 106 (403)
Q Consensus 27 ~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~~~~~~~~i 106 (403)
.|.|+......++.++|++|.|.+.. .+..|.|.||||||.+||+.|...||+..+|++|++..++ +.+++++
T Consensus 6 ~i~I~~~~~~~~~~k~~~~Y~I~v~~-----~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~p~~~~~~~~~--~~~~~~l 78 (116)
T d1xtea_ 6 SVSIPSSDEHREKKKRFTVYKVLVSV-----GRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGD--NFDPDFI 78 (116)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEE-----TTEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCSSC--TTCHHHH
T ss_pred cEEeCCceEeccCCCCEEEEEEEEEE-----CCcEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCCcccccC--ccCHHHH
Confidence 46666666666667899999999986 4578999999999999999999999999998888887777 7899999
Q ss_pred HHHHHHHHHHHHHHhcCccccCChhhhcccccChh
Q 043025 107 EMRRQGLDLFVNRIASHPELQQSEDLKTFLQADEE 141 (403)
Q Consensus 107 ~~R~~~L~~fl~~~~~~~~l~~~~~~~~FL~~~~~ 141 (403)
++|+.+|+.||+.|+++|.+++++.|+.||+.+++
T Consensus 79 ~~Rr~~L~~yL~~l~~~~~l~~~~~~~~FL~~d~~ 113 (116)
T d1xtea_ 79 KQRRAGLNEFIQNLVRYPELYNHPDVRAFLQMDSP 113 (116)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTSHHHHHHTTTTCG
T ss_pred HHHHHHHHHHHHHHHhCHhhhcChHHHhhcCCCCC
Confidence 99999999999999999999999999999998764
|
| >d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Vam7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=1.4e-23 Score=164.05 Aligned_cols=104 Identities=30% Similarity=0.394 Sum_probs=91.7
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc-----c
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK-----F 99 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~-----~ 99 (403)
.+.|.|.|+... .+|++|.|.+ ..|.|+||||||.+||+.|...||+..+||||+|..++. .
T Consensus 5 ~~~i~i~d~~i~----~~~~~Y~I~~---------~~~~V~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~ 71 (117)
T d1kmda_ 5 KLRIKVDDVKIN----PKYVLYGVST---------PNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRR 71 (117)
T ss_dssp CCCCEEEEEEEC----SSCEEEEEEC---------SSCCEEECHHHHHHHHHHHHHHHCSCCCCCCCCCCCSSCSTTCCC
T ss_pred cEEEEeCCCEEe----cCEEEEEEEE---------CCEEEEehHHHHHHHHHHHHHHCCCCcCCCCCccccccccccccC
Confidence 568899998875 3699999976 358899999999999999999999999999999987631 2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCcc---ccCChhhhcccccChh
Q 043025 100 RFSAEFIEMRRQGLDLFVNRIASHPE---LQQSEDLKTFLQADEE 141 (403)
Q Consensus 100 ~~~~~~i~~R~~~L~~fl~~~~~~~~---l~~~~~~~~FL~~~~~ 141 (403)
+++++|+++|+.+|+.||+.|++||. +++|+.|+.||+.+.+
T Consensus 72 ~~~~~~ie~R~~~Le~yL~~ll~~p~~~~~~~s~~l~~FL~~s~~ 116 (117)
T d1kmda_ 72 YDDPEMIDERRIGLERFLNELYNDRFDSRWRDTKIAQDFLQLSKP 116 (117)
T ss_dssp TTCHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCcchhhhcCCHHHHHHhCCCCC
Confidence 67999999999999999999999996 6789999999988764
|
| >d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p40phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1e-21 Score=159.76 Aligned_cols=110 Identities=25% Similarity=0.391 Sum_probs=95.3
Q ss_pred cEEEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCC--------ccCCCCCCCccc
Q 043025 25 YLSVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKG--------IFIPPLPEKSAV 96 (403)
Q Consensus 25 ~~~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~--------~~iP~lP~k~~~ 96 (403)
.+.++|+++++.. |.++|++|.|.+... ++..|.|+||||||.+||..|...||. +.+|+||+|...
T Consensus 20 ~v~~~i~~~e~~~-~~~~y~vY~I~v~~~----~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~~~~~~~lP~lP~k~~~ 94 (143)
T d1h6ha_ 20 AISANIADIEEKR-GFTSHFVFVIEVKTK----GGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYV 94 (143)
T ss_dssp EEEEEEEEEEEEC-SSSCEEEEEEEEEET----TSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCCS
T ss_pred eEEEEEeceeEec-CCCCeEEEEEEEEEc----CCCEEEEEEeHHHHHHHHHHHHHHCchhhccccccccccCCCccccC
Confidence 4889999998764 557899999999864 457899999999999999999999974 468999988766
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHHhcC-ccccCChhhhcccccChhh
Q 043025 97 EKFRFSAEFIEMRRQGLDLFVNRIASH-PELQQSEDLKTFLQADEET 142 (403)
Q Consensus 97 ~~~~~~~~~i~~R~~~L~~fl~~~~~~-~~l~~~~~~~~FL~~~~~~ 142 (403)
+ ++.+++++|+.+|+.||+.|+.. +.++.|+.|+.||+....+
T Consensus 95 ~---~~~~~ie~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~~~d 138 (143)
T d1h6ha_ 95 G---VKQEIAEMRIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSPYD 138 (143)
T ss_dssp S---CHHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHHH
T ss_pred C---CChHHHHHHHHHHHHHHHHHHhCChhhccCHHHHHHhCCCCcc
Confidence 4 78999999999999999998875 5799999999999887644
|
| >d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p47phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.1e-20 Score=151.54 Aligned_cols=115 Identities=17% Similarity=0.214 Sum_probs=97.8
Q ss_pred cE-EEEEcCceEeCCCCcceEEEEEEEEecCCCCCCCceEEeeccchHHHHHHHHHhhcCCccCCCCCCCccccc-----
Q 043025 25 YL-SVSVTDPVKLGNGVQAYISYRVITKTNFPEYQGPEKIVIRRYSDFVWLRDRLFEKYKGIFIPPLPEKSAVEK----- 98 (403)
Q Consensus 25 ~~-~v~V~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~v~RRysdF~~L~~~L~~~~p~~~iP~lP~k~~~~~----- 98 (403)
++ .|.|.+.++...+ ++|++|.|.+... ++..|.|+|||+||.+||..|...||+..+|++|++..++.
T Consensus 4 ~i~~i~i~~~e~~~~~-~k~~vY~I~v~~~----d~~~~~V~RRYsdF~~Lh~~L~~~fp~~~~~~~p~k~~~~~~~~~~ 78 (140)
T d1kq6a_ 4 FIRHIALLGFEKRFVP-SQHYVYMFLVKWQ----DLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPK 78 (140)
T ss_dssp CEEEEEEEEEEEECSS-SCEEEEEEEEEET----TCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCC
T ss_pred eEEEEEEeeeEEecCC-CCeEEEEEEEEEc----CCCEEEEEEEHHHHHHHHHHHHHHCCcccCCCCchhhccccccccc
Confidence 44 5899999887665 5788999999864 45789999999999999999999999999999998865431
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhcCc-cccCChhhhcccccChhhHH
Q 043025 99 FRFSAEFIEMRRQGLDLFVNRIASHP-ELQQSEDLKTFLQADEETME 144 (403)
Q Consensus 99 ~~~~~~~i~~R~~~L~~fl~~~~~~~-~l~~~~~~~~FL~~~~~~~~ 144 (403)
...+.+++++|+.+|+.||+.|+.+| .++.|+.|..||+..+.++.
T Consensus 79 ~~~~~~~ie~R~~~Le~yL~~Ll~~p~~l~~s~~v~~Fl~~~~~d~~ 125 (140)
T d1kq6a_ 79 WFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRPDDLK 125 (140)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhCChhhhCCHHHHHHhCCCccccC
Confidence 24589999999999999999999876 59999999999998765553
|
| >d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: BAR domain domain: Amphiphysin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.69 E-value=8.6e-15 Score=127.13 Aligned_cols=203 Identities=11% Similarity=0.119 Sum_probs=168.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|++|......++.++..++.|.+.+..++...++++.....|+..|..++....+.. ..+......+.....+..
T Consensus 10 ~D~~fe~~~~~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~ 85 (217)
T d1urua_ 10 ADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGY----DALQAQTGASESLWADFA 85 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTH----HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchH----HHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999877664332 223333444444455666
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
......+.+||..|..++..++..++.|..+..+|..+..++.+...+-.+ +..+.++ ..++.+++.++..
T Consensus 86 ~~~~~~v~~pL~~~~~~~~~~~~~~kkr~~~~~dyd~~~~~l~k~~~k~~~--~~~~~~l-------~~~e~~~~~a~~~ 156 (217)
T d1urua_ 86 HKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANK--RKDDVKL-------TKGREQLEEARRT 156 (217)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCB--TTBCCTT-------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccchhhh-------HHHHHHHHHHHHH
Confidence 777788999999999999999999999999999999998887665432111 1122333 3445667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEACS 401 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~~ 401 (403)
|+.++..+..|+++|...+..+|...|..|+..++.||+++.+.|+.+.+.++.++
T Consensus 157 fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~l~~~~~~l~ 212 (217)
T d1urua_ 157 YEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLA 212 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999998764
|
| >d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: Arfaptin, Rac-binding fragment domain: Arfaptin, Rac-binding fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.5e-13 Score=116.07 Aligned_cols=196 Identities=10% Similarity=0.014 Sum_probs=164.6
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 186 SNPEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACEGDALGKAFSELGMKSEALSVKLQREA 265 (403)
Q Consensus 186 ~d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e~~~L~~~~~~~~~~~~~~~~~~~~~~ 265 (403)
.|++|+.....+..++..++.|.+.+..+......+......||..|..++..++ .++..+..+|.++..+........
T Consensus 4 ~D~e~e~~~~~l~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 82 (200)
T d1i4da_ 4 VDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP-ELQEEFGYNAETQKLLCKNGETLL 82 (200)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999987664 467778888888888877766666
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHH
Q 043025 266 HQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRR 345 (403)
Q Consensus 266 ~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~ 345 (403)
......+.+++..+...+..+++.++.|..+..+|.....++.+...+ + +-..-..++.+++.+++.++.+
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~kk~~~~~~dyd~~~~k~~~~~~~-------~--~~~~~~~kl~~ae~~~~~a~~~ 153 (200)
T d1i4da_ 83 GAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLG-------P--RDAGTRGRLESAQATFQAHRDK 153 (200)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc-------c--cccchhhhHHHHHHHHHHHHHH
Confidence 666777778888888999999999999999999999988776544221 0 1111223566678888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 346 FETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWR 391 (403)
Q Consensus 346 ~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We 391 (403)
|+.++..+..+++.|...|..+|...|..|+..++.||+++.+.|+
T Consensus 154 fe~~~~~~~~~l~~l~~~r~~~~~~~l~~~~~~~~~f~~~~~~~le 199 (200)
T d1i4da_ 154 YEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLE 199 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999986
|
| >d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: IMD domain domain: BAP2/IRSp53 N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.9e-06 Score=74.98 Aligned_cols=199 Identities=11% Similarity=0.055 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 199 ELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGAC-----EGDALGKAFSELGMKSEALSVKLQREAHQLLMNFE 273 (403)
Q Consensus 199 ~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~-----e~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (403)
.....++.+.+.+..+.+..+.++.+...|+.+|..++.. ....++.++..+|..+..+..............|.
T Consensus 23 ~~np~~k~li~~~k~y~~a~~~~~~a~~~f~dal~~~~~~~~~~~~~~~ig~~L~~~~~~~~~i~~~~~~l~~~~~~~~i 102 (248)
T d1y2oa1 23 QFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELL 102 (248)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666677777777777777777777776642 13468999999999999999998888899999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 274 EPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLM--LTRSDKVGEAEIEYKELKAESEDSTRRFETIV 350 (403)
Q Consensus 274 e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~--~~~~~ki~~l~~~i~~~~~~~~~~~~~~~~i~ 350 (403)
.||..++. .+..+++.-++- ..++......+.+....+.+++ ..+..+..................+..++.+.
T Consensus 103 ~PL~~~~~~d~k~i~~~kK~~---~k~~k~~~~~l~K~~~~~~k~~kk~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l 179 (248)
T d1y2oa1 103 TQLEQKVELDSRYLSAALKKY---QTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYV 179 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876 455555533322 2233333434444433333332 11112222223334444455556667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 351 RLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 351 ~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
..+..+..-..+.|...|-..|..|+..++.||.+..++.+++.|.++..
T Consensus 180 ~~~~~~~~~eerkr~~~lv~~l~~~~~a~~~~~~q~~~~l~~~~~~~~~~ 229 (248)
T d1y2oa1 180 SDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQA 229 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 77777777777777777889999999999999999999999999988754
|
| >d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: BAR domain domain: Endophilin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=4.9e-07 Score=78.12 Aligned_cols=193 Identities=11% Similarity=0.149 Sum_probs=125.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhhh--hhh
Q 043025 187 NPEYEKLKHYIFELENHLAEAQKHAYRLVKR----------------------HRELGESLSDFGKAAKLLGACE--GDA 242 (403)
Q Consensus 187 d~~f~~~~~~i~~le~~l~~l~k~~~~l~k~----------------------~~~l~~~~~~l~~~~~~l~~~e--~~~ 242 (403)
|+.|.+....++.+...+..+.+.+...... ...+......+|.++...+..- ...
T Consensus 20 d~~f~~lEk~~~~~~~~~~kl~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~ 99 (237)
T d2d4ca1 20 DDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDCN 99 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGCSCC-----------------CCCHHHHHHHHHHHHHHHHCSSSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHhhhcccccccchhhhhHHHHHHHHHhcccCCCCcH
Confidence 5667777777777776666666655443210 0011112233444444333221 235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCc
Q 043025 243 LGKAFSELGMKSEALSVKLQREAHQLLMNFEEPLKDYVRAVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRS 322 (403)
Q Consensus 243 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~ 322 (403)
++.++..+|.+...++.............+.+||..++.. .++.+...+.+....+......+++.+.+..+
T Consensus 100 ~~~~L~~~~~~~~~i~~~~~~~~~~i~~~v~~pl~~~l~~--d~~~~~~~~~~~rk~~d~~~~~~~~~~~k~~~------ 171 (237)
T d2d4ca1 100 FGPALGEVGEAMRELSEVKDSLDIEVKQNFIDPLQNLHDK--DLREIQSALQHHLKKLEGRRLDFDYKKKRQGK------ 171 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------
Confidence 6778889999999998888888888889999999998763 22233333333333444444444333222110
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEA 399 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~ 399 (403)
..+.+++.++..|+..+..+..++..+...+ .++...|..|+..|+.||+++.+.|+.+.+.++.
T Consensus 172 -----------~~~e~l~~a~~~~e~~~~~~~~~l~~l~~~~-~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~~ 236 (237)
T d2d4ca1 172 -----------IPDEELRQALEKFDESKEIAESSMFNLLEMD-IEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEE 236 (237)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1234566778888888888999999997654 6677889999999999999999999999999874
|
| >d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: BAR domain domain: DCC-interacting protein 13-alpha, APPL1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=9.3e-06 Score=71.27 Aligned_cols=194 Identities=11% Similarity=0.058 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 195 HYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGKAAKLLGACE------GDALGKAFSELGMKSEALSVKLQREAHQL 268 (403)
Q Consensus 195 ~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~~~~~l~~~e------~~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (403)
..+..++..++.+.+....++.....++.+...|...+..++... .+.+..++..+|..+..+...........
T Consensus 23 ~~~~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~L~~~~~~~~~~~~dd~~~~~~l~~f~~~~~el~~~~~~l~~~~ 102 (268)
T d2elba1 23 EDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQL 102 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555556666666666666666666555321 23567888999999999988888888888
Q ss_pred HHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 269 LMNFEEPLKDYVR-AVQSIKATIAERANAFRQQCELAETMKLKEINLDKLMLTRSDKVGEAEIEYKELKAESEDSTRRFE 347 (403)
Q Consensus 269 ~~~~~e~l~~~~~-~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~l~kl~~~~~~ki~~l~~~i~~~~~~~~~~~~~~~ 347 (403)
...+..||..++. .+..+++.-+.=++...+|+.+..+. .++...++ -...+.++..++..++..|+
T Consensus 103 ~~~~~~pL~~f~~~di~~~ke~kk~fek~~~~yd~~l~k~-------~~~~k~k~-----~~~~~~Ea~~~l~~~r~~f~ 170 (268)
T d2elba1 103 ADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRY-------SRLSKKRE-----NDKVKYEVTEDVYTSRKKQH 170 (268)
T ss_dssp HHHTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTCCCC----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHhcccCC-----cchhhhhHHHHHHHHHHHHH
Confidence 8889999988874 56666664333333444555543332 22221111 11223345667788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhc
Q 043025 348 TIVRLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAW-RTLLPKLEAC 400 (403)
Q Consensus 348 ~i~~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~W-e~~~~~~~~~ 400 (403)
...-.....+..++..+..++...|..|+..+..|+++..+.+ +.+.+.++.+
T Consensus 171 ~~~~d~~~~l~~l~~~k~~~~l~~l~~~~~a~~~ff~~~~~~l~~~l~~~~~~l 224 (268)
T d2elba1 171 QTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANI 224 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988999999999999999999999999999999999887765 3444444443
|
| >d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: FCH domain domain: Formin-binding protein 1, FNBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.012 Score=50.83 Aligned_cols=49 Identities=12% Similarity=0.281 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 043025 352 LMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKLEAC 400 (403)
Q Consensus 352 ~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~~~~ 400 (403)
.+...+..++..|...++.+|..|+..............+.+...++++
T Consensus 211 ~~~~~~q~~e~~r~~~~k~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~i 259 (288)
T d2efla1 211 NIFQKIQEMEERRIVRMGESMKTYAEVDRQVIPIIGKCLDGIVKAAESI 259 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 3556777888899999999999999999999999999999888888765
|
| >d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: FCH domain domain: CDC42-interacting protein 4, CIP4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.079 Score=45.11 Aligned_cols=78 Identities=13% Similarity=0.211 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 323 DKVGEAEIEYKELKAESEDSTRRFETIV---------------RLMNEEIVRFQEQKTLDMGIAFHNFSKGQARLASSIA 387 (403)
Q Consensus 323 ~ki~~l~~~i~~~~~~~~~~~~~~~~i~---------------~~~~~El~~f~~~r~~~l~~~l~~~a~~qi~~~~~~~ 387 (403)
.++.++.....+...+++.+++++.... -.+...+..++..+...++..|..|+.........+.
T Consensus 158 ~~~~K~~~~~~~~~~~~~~~~~~y~~~l~~~n~~~~~~~~~~~p~~l~~lq~~e~~r~~~lk~~l~~~~~~~~~~~~~~~ 237 (279)
T d2efka1 158 ADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIA 237 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4455555666655555555544442222 2234556666778888888999999988888888888
Q ss_pred HHHHHHHHHhhhc
Q 043025 388 DAWRTLLPKLEAC 400 (403)
Q Consensus 388 ~~We~~~~~~~~~ 400 (403)
..-+.+...++.+
T Consensus 238 ~~~~~l~~~~~~i 250 (279)
T d2efka1 238 KCLEGMKVAANAV 250 (279)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHC
Confidence 8777777776654
|
| >d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: Arfaptin, Rac-binding fragment domain: Arfaptin, Rac-binding fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.7 Score=36.58 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043025 188 PEYEKLKHYIFELENHLAEAQKHAYRLVKRHRELGESLSDFGK 230 (403)
Q Consensus 188 ~~f~~~~~~i~~le~~l~~l~k~~~~l~k~~~~l~~~~~~l~~ 230 (403)
+.|..+...+..+....+.+......+......++.++.++|.
T Consensus 13 ~~l~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~ 55 (200)
T d1i4da_ 13 ELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQ 55 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455556666666666666666777777777777777766664
|
| >d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: IMD domain domain: BAP2/IRSp53 N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.33 E-value=11 Score=30.47 Aligned_cols=128 Identities=13% Similarity=0.025 Sum_probs=56.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHhccc--CcchHHHHHHHHHHHHHHHHHHHH
Q 043025 268 LLMNFEEPLKDYVRAVQSIKATIAE-RANAFRQQCELAETMKLKEINLDKLMLT--RSDKVGEAEIEYKELKAESEDSTR 344 (403)
Q Consensus 268 ~~~~~~e~l~~~~~~~~s~k~~l~~-R~~~~~~~~~~~~~l~~k~~~l~kl~~~--~~~ki~~l~~~i~~~~~~~~~~~~ 344 (403)
.+..+...+......+...+.-+.. +...-..+......+.+.+.+..+.... ..++...............+.+..
T Consensus 101 ~i~PL~~~~~~d~k~i~~~kK~~~k~~k~~~~~l~K~~~~~~k~~kk~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~ 180 (248)
T d1y2oa1 101 LLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVS 180 (248)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555444443432 3333344555544444332222221111 112222233333333333333322
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043025 345 RFETIVRLMNEEIVRFQE--QKTLDMGIAFHNFSKGQARLASSIADAWRTLLPKL 397 (403)
Q Consensus 345 ~~~~i~~~~~~El~~f~~--~r~~~l~~~l~~~a~~qi~~~~~~~~~We~~~~~~ 397 (403)
.. +...+..|-.||.- .....|-.+...|-..-....++....|+......
T Consensus 181 ~~--~~~~~~eerkr~~~lv~~l~~~~~a~~~~~~q~~~~l~~~~~~~~~~~~~~ 233 (248)
T d1y2oa1 181 DG--YKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKELLAQKLPLWQQACADP 233 (248)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCT
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhH
Confidence 22 22334555555542 33344444455555555566778888888765443
|