Citrus Sinensis ID: 043038

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-
Protein Sequence
MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT
Secondary Structure (PSIPRED)
cccccccccccEEEccccccccccccccccccEEEccccccEEEccHHHHHcccccccccEEEcccccccccccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEcccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEEccccHHHHHHHHcEEEEEcccccccccccHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEccccccccccHHcccccEEEcccccccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccHEEEcccccccccccHHHccHHHHHHcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEccccccc
Coil and Loop (DISEMBL)
MPNLTKFTQLLFRSLdsnnmsgllplissnlvylglsdnsflGSISHFLCDKINETKRLEALKLNDnylqgelpdcwmsdqnlKILKLSNnkfignlpnsfgSLAFLVWLDlgknrlfgtipatlknctalesldVERFSRMVVLNLrsnkfhgplptrfcDLAILQILDIadnnlsgaipnyiNNVTGMVttnsfsrsaqqhlhvpldVDVILMEKASVVSREEVVEYNEILNLVMVTIVSrndllknvplevrnlkatqslnfshntft
Flexible Loop (DISEMBL)
MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRsnkfhgplPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEvrnlkatqslnfshntft
Low Complexity Region (SEG)
MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT
Disordered region (IsUnstruct)
******FTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNL**************
Disordered Region (DISOPRED)
MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTT**********LHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT
Disordered Region (DISEMBL)
MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT
Disordered Region (DISPRO)
MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFS*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	271	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.940	0.301	0.298	8e-22
O49318	1124	Probable leucine-rich rep	no	no	0.937	0.225	0.303	7e-19
Q9SCT4	836	Probably inactive leucine	no	no	0.653	0.211	0.321	3e-18
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.959	0.207	0.293	2e-17
O82318	960	Probably inactive leucine	no	no	0.937	0.264	0.299	3e-17
C0LGQ9	1037	Probable LRR receptor-lik	no	no	0.789	0.206	0.291	4e-17
O22938	890	Leucine-rich repeat recep	no	no	0.678	0.206	0.331	6e-17
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.859	0.211	0.275	9e-17
Q9FL28	1173	LRR receptor-like serine/	no	no	0.874	0.202	0.281	1e-16
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.926	0.200	0.288	4e-16

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  104 bits (259), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 138/318 (43%), Gaps = 63/318 (19%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLP---------LISSN--------------LVYLGLSD 38
           P ++K   LL   L  NN+ G +P         ++S N              +  L L+ 
Sbjct: 393 PTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNS 452

Query: 39  NSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS-DQNLKILKLSNNKFIGNL 97
           NSF G I + +C    +   L  L L++N   G +P C  +   ++K L L +N F G L
Sbjct: 453 NSFQGPIPYMIC----KLSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTL 508

Query: 98  PNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVV 144
           P+ F     LV LD+  N+L G  P +L NC ALE ++V             E    + V
Sbjct: 509 PDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHV 568

Query: 145 LNLRSNKFHGPLPTRFCDLAI--LQILDIADNNLSGAI-PNYINNVTGMVT--------T 193
           LNLRSNKF+GPL  R   +    L+I+DI+ NN SG + P Y +N   M T         
Sbjct: 569 LNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYM 628

Query: 194 NSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLE 253
             F R A  + H           +  +V++   + +  I         S N +  N+P  
Sbjct: 629 TEFWRYADSYYH-----------EMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPES 677

Query: 254 VRNLKATQSLNFSHNTFT 271
           +  LK  + LN S N FT
Sbjct: 678 LGYLKELRVLNLSGNAFT 695

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 128/277 (46%), Gaps = 23/277 (8%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLP---LISSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
           P + + + L+  +L SN + G +P   L   +L+ L +  N   G     LC  +N    
Sbjct: 439 PFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVN---- 494

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
           L A++L+ N   G LP    + Q L+ L L+ N+F  NLPN    L+ LV  ++  N L 
Sbjct: 495 LSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLT 554

Query: 119 GTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSG 178
           G IP+ + NC  L+ LD+ R           N F G LP     L  L+IL +++N  SG
Sbjct: 555 GPIPSEIANCKMLQRLDLSR-----------NSFIGSLPPELGSLHQLEILRLSENRFSG 603

Query: 179 AIPNYINNVTGM----VTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILN 234
            IP  I N+T +    +  N FS S    L +   + + +    +  S E   E    L+
Sbjct: 604 NIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGN-LH 662

Query: 235 LVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
           L+M   ++ N L   +P    NL +    NFS+N  T
Sbjct: 663 LLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLT 699

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SCT4|IMK2_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 19/196 (9%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
           P+LT+ T+L   +L  N++SG LP+    S  L +L L  N+  GSI  F    +N +  
Sbjct: 184 PSLTESTRLYRLNLSFNSLSGPLPVSVARSYTLTFLDLQHNNLSGSIPDFF---VNGSHP 240

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
           L+ L L+ N   G +P        L+ + +S+N+  G++P   G L  L  LD   N + 
Sbjct: 241 LKTLNLDHNRFSGAVPVSLCKHSLLEEVSISHNQLSGSIPRECGGLPHLQSLDFSYNSIN 300

Query: 119 GTIPATLKNCTALESLDVE-------------RFSRMVVLNLRSNKFHGPLPTRFCDLAI 165
           GTIP +  N ++L SL++E             R   +  LNL+ NK +GP+P    +++ 
Sbjct: 301 GTIPDSFSNLSSLVSLNLESNHLKGPIPDAIDRLHNLTELNLKRNKINGPIPETIGNISG 360

Query: 166 LQILDIADNNLSGAIP 181
           ++ LD+++NN +G IP
Sbjct: 361 IKKLDLSENNFTGPIP 376

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 138/296 (46%), Gaps = 36/296 (12%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEA 61
           P++ +F  L+   L SN + G +P   SNL     S + F   +S  +  ++     L++
Sbjct: 89  PSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKS 148

Query: 62  LKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI 121
           LKL DN L G +P+ + +  NL++L L++ +  G +P+ FG L  L  L L  N L G I
Sbjct: 149 LKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNELEGPI 208

Query: 122 PATLKNCTALE-----------SLDVE--RFSRMVVLNLRSNKFHGPLPTRFCDLAILQI 168
           PA + NCT+L            SL  E  R   +  LNL  N F G +P++  DL  +Q 
Sbjct: 209 PAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLVSIQY 268

Query: 169 LDIADNNLSGAIPNYI-------------NNVTGMVTTNSFSRSAQQHLHVPLDVDVILM 215
           L++  N L G IP  +             NN+TG++    F R  Q      L+  V+  
Sbjct: 269 LNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVI-HEEFWRMNQ------LEFLVLAK 321

Query: 216 EKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
            + S    + +   N  L  +    +S   L   +P E+ N ++ + L+ S+NT T
Sbjct: 322 NRLSGSLPKTICSNNTSLKQLF---LSETQLSGEIPAEISNCQSLKLLDLSNNTLT 374

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 138/297 (46%), Gaps = 43/297 (14%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLP---LISSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
           P+L    +L +  L  N +SG +P       NL+ L  SDNS  G I       + + + 
Sbjct: 259 PSLGDLKKLEYMFLYQNKLSGQIPPSIFSLQNLISLDFSDNSLSGEIPEL----VAQMQS 314

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
           LE L L  N L G++P+   S   LK+L+L +N+F G +P + G    L  LDL  N L 
Sbjct: 315 LEILHLFSNNLTGKIPEGVTSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLT 374

Query: 119 GTIPATLKNCTALE-------SLDVE------RFSRMVVLNLRSNKFHGPLPTRFCDLAI 165
           G +P TL +   L        SLD +          +  + L++N F G LP  F  L +
Sbjct: 375 GKLPDTLCDSGHLTKLILFSNSLDSQIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQL 434

Query: 166 LQILDIADNNLSGAIPNY-----------INNVTGMVTTNSFSRSAQQHLHVPLDVDVIL 214
           +  LD+++NNL G I  +           +N   G +    FSRS +      LD+    
Sbjct: 435 VNFLDLSNNNLQGNINTWDMPQLEMLDLSVNKFFGELP--DFSRSKRLK---KLDLS--- 486

Query: 215 MEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
             K S V  + ++ + EI++L +    S N++   +P E+ + K   +L+ SHN FT
Sbjct: 487 RNKISGVVPQGLMTFPEIMDLDL----SENEITGVIPRELSSCKNLVNLDLSHNNFT 539

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ9|Y4294_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/257 (29%), Positives = 122/257 (47%), Gaps = 43/257 (16%)

Query: 15  LDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74
           L SN+++G LPL++   V L LS+N F G+++ +     ++ + +E L L+ N+  G  P
Sbjct: 349 LSSNSLTGELPLLTGGCVLLDLSNNQFEGNLTRW-----SKWENIEYLDLSQNHFTGSFP 403

Query: 75  DCWMSDQNLKILKLSNNKFIGNLPNSFGS-LAFLVWLDLGKNRLFGTIPATLKNCTALES 133
           D          L LS NK  G+LP    +    L  LD+  N L G IP  L +   LE 
Sbjct: 404 DATPQLLRANHLNLSYNKLTGSLPERIPTHYPKLRVLDISSNSLEGPIPGALLSMPTLEE 463

Query: 134 LDVE-------------RFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
           + ++               SR+ +L+L  N+F G LP  F  L  LQ+L++A NNLSG++
Sbjct: 464 IHLQNNGMTGNIGPLPSSGSRIRLLDLSHNRFDGDLPGVFGSLTNLQVLNLAANNLSGSL 523

Query: 181 PNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTI 240
           P+ +N++  + + +     +Q H   PL  ++             ++ +N          
Sbjct: 524 PSSMNDIVSLSSLD----VSQNHFTGPLPSNL----------SSNIMAFN---------- 559

Query: 241 VSRNDLLKNVPLEVRNL 257
           VS NDL   VP  ++N 
Sbjct: 560 VSYNDLSGTVPENLKNF 576

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 68/205 (33%), Positives = 97/205 (47%), Gaps = 21/205 (10%)

Query: 7   FTQLLFRSLDSNNMSGLLPL---ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALK 63
            + L +   D NN+SG +       SNL  L L+ N F G+I   L   IN    L+ L 
Sbjct: 277 ISGLTYFEADKNNLSGEIVAEFSKCSNLTLLNLAANGFAGTIPTELGQLIN----LQELI 332

Query: 64  LNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA 123
           L+ N L GE+P  ++   NL  L LSNN+  G +P    S+  L +L L +N + G IP 
Sbjct: 333 LSGNSLFGEIPKSFLGSGNLNKLDLSNNRLNGTIPKELCSMPRLQYLLLDQNSIRGDIPH 392

Query: 124 TLKNCTALESLDVER----------FSRM----VVLNLRSNKFHGPLPTRFCDLAILQIL 169
            + NC  L  L + R            RM    + LNL  N  HG LP     L  L  L
Sbjct: 393 EIGNCVKLLQLQLGRNYLTGTIPPEIGRMRNLQIALNLSFNHLHGSLPPELGKLDKLVSL 452

Query: 170 DIADNNLSGAIPNYINNVTGMVTTN 194
           D+++N L+G+IP  +  +  ++  N
Sbjct: 453 DVSNNLLTGSIPPLLKGMMSLIEVN 477

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 0

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score = 87.4 bits (215), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 125/272 (45%), Gaps = 39/272 (14%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPL---ISSNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
           +  +F  L+  SL SN +SG +P       +L  L L DN   GS+   L +  N    L
Sbjct: 422 HFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQN----L 477

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG 119
            AL+L+ N+L G +       +NL+ L+L+NN F G +P   G+L  +V  ++  N+L G
Sbjct: 478 TALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTG 537

Query: 120 TIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGA 179
            IP  L +C  ++ LD           L  NKF G +      L  L+IL ++DN L+G 
Sbjct: 538 HIPKELGSCVTIQRLD-----------LSGNKFSGYIAQELGQLVYLEILRLSDNRLTGE 586

Query: 180 IPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVT 239
           IP+   ++T ++                      L    +++S    VE  ++ +L +  
Sbjct: 587 IPHSFGDLTRLME---------------------LQLGGNLLSENIPVELGKLTSLQISL 625

Query: 240 IVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
            +S N+L   +P  + NL+  + L  + N  +
Sbjct: 626 NISHNNLSGTIPDSLGNLQMLEILYLNDNKLS 657

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 121/259 (46%), Gaps = 22/259 (8%)

Query: 29  SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88
           + L +LGLS+N  +G IS    ++I   + LE L L+ N   GE P    + +NL +L +
Sbjct: 312 TQLTHLGLSENHLVGPIS----EEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTV 367

Query: 89  SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER---------- 138
             N   G LP   G L  L  L    N L G IP+++ NCT L+ LD+            
Sbjct: 368 GFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRG 427

Query: 139 FSRM--VVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGM----VT 192
           F RM    +++  N F G +P    + + L+ L +ADNNL+G +   I  +  +    V+
Sbjct: 428 FGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVS 487

Query: 193 TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPL 252
            NS +    + +    D++++ +       R  +      L L+    +  NDL   +P 
Sbjct: 488 YNSLTGPIPREIGNLKDLNILYLHSNGFTGR--IPREMSNLTLLQGLRMYSNDLEGPIPE 545

Query: 253 EVRNLKATQSLNFSHNTFT 271
           E+ ++K    L+ S+N F+
Sbjct: 546 EMFDMKLLSVLDLSNNKFS 564

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 130/277 (46%), Gaps = 26/277 (9%)

Query: 15  LDSNNMSGLLP--LIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG 71
           L +N++ G LP  LIS  NL  + LS N   G+I H LC     +    +  + +N  + 
Sbjct: 535 LYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLCG----SSSYLSFDVTNNGFED 589

Query: 72  ELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTAL 131
           E+P    + QNL  L+L  N+  G +P + G +  L  LD+  N L GTIP  L  C  L
Sbjct: 590 EIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKL 649

Query: 132 ESLDVE-------------RFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSG 178
             +D+              + S++  L L SN+F   LPT   +   L +L +  N+L+G
Sbjct: 650 THIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNG 709

Query: 179 AIPNYINNVTGM----VTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILN 234
           +IP  I N+  +    +  N FS S  Q +     +  + + + S+   E  VE  ++ +
Sbjct: 710 SIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTG-EIPVEIGQLQD 768

Query: 235 LVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
           L     +S N+   ++P  +  L   ++L+ SHN  T
Sbjct: 769 LQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLT 805

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
255543977	1075	serine/threonine-protein kinase bri1, pu	0.940	0.237	0.422	2e-48
224072885	1024	predicted protein [Populus trichocarpa]	0.922	0.244	0.441	1e-47
255543959	602	serine-threonine protein kinase, plant-t	0.922	0.415	0.437	3e-47
255547794	909	serine-threonine protein kinase, plant-t	0.966	0.288	0.405	3e-47
209970607	1045	M18S-3Ap [Malus floribunda]	0.937	0.243	0.401	2e-45
350284751	980	receptor-like protein [Malus baccata]	0.929	0.257	0.404	2e-44
14330716	980	HcrVf2 protein [Malus floribunda] gi|350	0.929	0.257	0.404	2e-44
350284749	980	receptor-like protein [Malus baccata]	0.929	0.257	0.404	2e-44
209970625	974	HB09p [Malus floribunda]	0.904	0.251	0.405	4e-44
209970618	967	M18-S3Bp [Malus floribunda]	0.929	0.260	0.402	4e-44

>gi|255543977|ref|XP_002513051.1| serine/threonine-protein kinase bri1, putative [Ricinus communis] gi|223548062|gb|EEF49554.1| serine/threonine-protein kinase bri1, putative [Ricinus communis]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 115/272 (42%), Positives = 156/272 (57%), Gaps = 17/272 (6%)

Query: 15  LDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74
           + SNN  G +P  SSNL  L LS NSF GSI +FLC K+ E K++E L L  N L GE+P
Sbjct: 653 MSSNNFRGPVPYFSSNLSALDLSSNSFTGSIINFLCYKMQEVKKMEVLNLGGNLLSGEIP 712

Query: 75  DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL 134
           DCW+S Q+L  + LSNNKF GN+P S G+L+FL  +    N L G IP +++NC  L +L
Sbjct: 713 DCWLSWQSLTAINLSNNKFTGNIPKSIGTLSFLESVHFANNDLSGDIPLSIQNCRKLFTL 772

Query: 135 DV--------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
           D               +    M++L LR NK HG +P   C +A LQILD+ADNN S  I
Sbjct: 773 DFSGNKLVGKIPSWIGKSIPDMIILILRGNKLHGQIPEEICRMASLQILDLADNNFSSMI 832

Query: 181 PNYINNVTGMVTTN-SFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVT 239
           P+  +N +GMV  N SF        +V      IL++ A +V +  V EY+ IL  V   
Sbjct: 833 PSCFSNFSGMVKVNDSFGSLTFDQSNV--GPSPILIDSAILVIKGRVAEYSTILGFVKAI 890

Query: 240 IVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
            +S N+L   +P+ + +L   QSL+FS N+ T
Sbjct: 891 DLSNNNLSGEIPMNITSLVGLQSLSFSQNSLT 922

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (498), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/272 (44%), Positives = 158/272 (58%), Gaps = 22/272 (8%)

Query: 15  LDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74
           L SN   G LP I SN+  L LS+NSF GS+ +FLC KI+E K ++ L L +N L G +P
Sbjct: 612 LSSNQFKGPLPSIFSNVGALDLSNNSFSGSMLNFLCHKIDELKNMQVLNLGENLLSGVIP 671

Query: 75  DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL 134
           DCW S Q L  +KLSNNK  GN+P+S G+L+ L  L +  + L G +P +LKNCT L +L
Sbjct: 672 DCWSSWQYLVAIKLSNNKLSGNIPDSIGALSLLESLHIRNSSLSGKLPISLKNCTKLITL 731

Query: 135 DV--------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
           DV              +RFS MVVLN+R+NKFHG +P   C+LA LQILD+A N LS +I
Sbjct: 732 DVAENELVGSMPAWIGKRFSSMVVLNMRANKFHGRIPRELCNLASLQILDLAHNRLSWSI 791

Query: 181 PNYINNVTGMVTTN-SFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVT 239
           P   N ++ M T N S  +       + LD      +   +V + +VVEY+ IL  V   
Sbjct: 792 PTCFNKLSAMATRNDSLGK-------IYLDSGSSTFDNVLLVMKGKVVEYSTILKFVRSI 844

Query: 240 IVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
            +S N L   +P EV  L   QSLN S N+ T
Sbjct: 845 DLSSNALCGEIPEEVTRLSELQSLNLSQNSLT 876

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543959|ref|XP_002513042.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548053|gb|EEF49545.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 120/274 (43%), Positives = 153/274 (55%), Gaps = 24/274 (8%)

Query: 15  LDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74
           L SN   G LP I SN   L LS+NSF G IS FLC K+NE + LE L L DN+L GELP
Sbjct: 186 LSSNRFQGPLPYIYSNARALYLSNNSFSGPISKFLCHKMNELRFLEVLDLGDNHLSGELP 245

Query: 75  DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL 134
           DCWMS   L ++ LSNN   G +P S G L+ L  L L  N L G IP +L+NCT L +L
Sbjct: 246 DCWMSWDGLVVINLSNNNLSGTIPRSIGGLSRLESLHLRNNTLTGEIPPSLRNCTGLSTL 305

Query: 135 DV--------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
           D+              E F  MV+L+LRSNKF G +P + C ++ L ILD+ADNNLSG I
Sbjct: 306 DLGQNQLVGNIPRWIGETFPDMVILSLRSNKFQGDVPKKLCLMSSLYILDLADNNLSGTI 365

Query: 181 PNYINNVTGMVTTNSFSRSAQQHLHVPLDVDV---ILMEKASVVSREEVVEYNEILNLVM 237
           P  +NN + MV       S    + + L+ D       E   +V + ++  Y+ IL  V 
Sbjct: 366 PKCLNNFSAMV-------SRDDSIGMLLEGDASSWPFYESMFLVMKGKMDGYSSILKFVR 418

Query: 238 VTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
              +S+N L   +P E  +LK  QSLN SHN  T
Sbjct: 419 SIDLSKNKLSGEIPEETISLKGLQSLNLSHNLLT 452

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547794|ref|XP_002514954.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223546005|gb|EEF47508.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  194 bits (494), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/286 (40%), Positives = 167/286 (58%), Gaps = 24/286 (8%)

Query: 1   MPNLTKFTQLLFRS---LDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETK 57
           +P++  F+   + S   L SN+  G LP +SSN+  L LS+N F GSISHF+C KI++ K
Sbjct: 475 IPDIPYFSHYYYYSTIDLSSNHFQGPLPHVSSNVTDLYLSNNLFSGSISHFVCRKIHKVK 534

Query: 58  RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117
           R+  + L++N+L G++ DCW S  NL+ ++LSNN F GN+P S G+L FL  L L  N L
Sbjct: 535 RMRLINLDNNFLSGQIRDCWSSWSNLEYIRLSNNNFSGNIPRSIGTLTFLKSLHLRNNSL 594

Query: 118 FGTIPATLKNCTALESLDVER--------------FSRMVVLNLRSNKFHGPLPTRFCDL 163
            G IP +L++CT+L SLD+                F  M  LNLR NKFHG +P   C L
Sbjct: 595 SGEIPLSLRDCTSLVSLDLGENQLIGHIPPWMGASFPSMAFLNLRENKFHGHIPPELCQL 654

Query: 164 AILQILDIADNNLSGAIPNYINNVTGMVTTN-SFSRSAQQHLHVPLDVDVILMEKASVVS 222
           A LQILD+A N+L+  IP+ I+ ++ M T+N + S    + L+          + A++VS
Sbjct: 655 ASLQILDLAHNDLARTIPSCIDKLSAMTTSNPAASFYGYRSLYASAS------DYATIVS 708

Query: 223 REEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN 268
           +  +VEY  IL  V    +S N+L  ++P  +  L   QSLN S N
Sbjct: 709 KGRIVEYFSILGFVKSLDLSGNNLSGDIPEVLTKLIGLQSLNLSDN 754

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  188 bits (477), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/274 (40%), Positives = 160/274 (58%), Gaps = 20/274 (7%)

Query: 15  LDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74
           L SN+ +G LP++ ++L +L LS++SF GS+ HF CD+ +E ++L  L L +N L G++P
Sbjct: 621 LSSNHFTGALPIVPTSLFWLDLSNSSFSGSVFHFFCDRPDEPRQLHFLHLGNNLLSGKVP 680

Query: 75  DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL 134
           DCWMS Q L  L L NN   GN+P S G L +L  L L  N L+G +P +L+NCT L  +
Sbjct: 681 DCWMSWQYLSFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQNCTRLSVV 740

Query: 135 DV--------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
           D+              +  S + +LNLRSNKF G +P   C L  LQILD+A N LSG I
Sbjct: 741 DLGENGFSGSIPIWIGKSLSELQILNLRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMI 800

Query: 181 PNYINNVTGMVTTNSFSRSAQQHLHVPLD---VDVILMEKASVVSREEVVEYNEILNLVM 237
           P   +N++ M     FS S    ++V L+   V + +  KA +V++   +EY +IL  V 
Sbjct: 801 PRCFHNLSAMA---DFSESRDASVYVILNGISVPLSVTAKAILVTKGREMEYGKILKFVK 857

Query: 238 VTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
              +S N +   +P E+ +L A +SLN S+N FT
Sbjct: 858 FMDLSCNFMYGEIPEELTDLLALKSLNLSNNHFT 891

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284751|gb|AEQ27747.1| receptor-like protein [Malus baccata]

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/272 (40%), Positives = 159/272 (58%), Gaps = 20/272 (7%)

Query: 15  LDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74
           L SN  +G LP++ ++L++L LS++SF GS+ HF CD+ +E K+L  L+L +N+L G++P
Sbjct: 560 LSSNQFTGALPIVPTSLMWLDLSNSSFSGSVFHFFCDRPDEPKQLGILRLGNNFLTGKVP 619

Query: 75  DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL 134
           DCWMS  +L  L L NN   GN+P S G L +L  L L  N L+G +P +L+NCT+L  +
Sbjct: 620 DCWMSWPSLAFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQNCTSLSVV 679

Query: 135 DV--------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
           D+              +  S + VLNLRSNKF G +P   C L  LQILD+A N LSG I
Sbjct: 680 DLSENGFSGSIPIWIGKSLSGLNVLNLRSNKFEGDIPNEVCYLKSLQILDLAHNELSGMI 739

Query: 181 PNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVT 239
           P   +N++ M   + SFS ++   +     V   L E A +V++   +EY +IL  V   
Sbjct: 740 PRCFHNLSAMANFSQSFSPTSFWGM-----VASGLTENAILVTKGMEMEYTKILGFVKGM 794

Query: 240 IVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
            +S N +   +P E+  L A Q LN S+N FT
Sbjct: 795 DLSCNFMYGEIPEELTGLLALQYLNLSNNRFT 826

Source: Malus baccata

Species: Malus baccata

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14330716|emb|CAC40826.1| HcrVf2 protein [Malus floribunda] gi|350284757|gb|AEQ27750.1| receptor-like protein [Malus micromalus]

 Score =  185 bits (470), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/272 (40%), Positives = 159/272 (58%), Gaps = 20/272 (7%)

Query: 15  LDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74
           L SN  +G LP++ ++L++L LS++SF GS+ HF CD+ +E K+L  L+L +N+L G++P
Sbjct: 560 LSSNQFTGALPIVPTSLMWLDLSNSSFSGSVFHFFCDRPDEPKQLGILRLGNNFLTGKVP 619

Query: 75  DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL 134
           DCWMS  +L  L L NN   GN+P S G L +L  L L  N L+G +P +L+NCT+L  +
Sbjct: 620 DCWMSWPSLAFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQNCTSLSVV 679

Query: 135 DV--------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
           D+              +  S + VLNLRSNKF G +P   C L  LQILD+A N LSG I
Sbjct: 680 DLSENGFSGSIPIWIGKSLSGLNVLNLRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMI 739

Query: 181 PNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVT 239
           P   +N++ M   + SFS ++   +     V   L E A +V++   +EY +IL  V   
Sbjct: 740 PRCFHNLSAMANFSQSFSPTSFWGM-----VASGLTENAILVTKGMEMEYTKILGFVKGM 794

Query: 240 IVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
            +S N +   +P E+  L A Q LN S+N FT
Sbjct: 795 DLSCNFMYGEIPEELTGLLALQYLNLSNNRFT 826

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284749|gb|AEQ27746.1| receptor-like protein [Malus baccata]

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/272 (40%), Positives = 159/272 (58%), Gaps = 20/272 (7%)

Query: 15  LDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74
           L SN  +G LP++ ++L++L LS++SF GS+ HF CD+ +E K+L  L+L +N+L G++P
Sbjct: 560 LSSNQFTGALPIVPTSLMWLDLSNSSFSGSVFHFFCDRPDEPKQLGILRLGNNFLTGKVP 619

Query: 75  DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL 134
           DCWMS  +L  L L NN   GN+P S G L +L  L L  N L+G +P +L+NCT+L  +
Sbjct: 620 DCWMSWPSLAFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQNCTSLSVV 679

Query: 135 DV--------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
           D+              +  S + VLNLRSNKF G +P   C L  LQILD+A N LSG I
Sbjct: 680 DLSENGFSGSIPIWIGKSLSGLNVLNLRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMI 739

Query: 181 PNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVT 239
           P   +N++ M   + SFS ++   +     V   L E A +V++   +EY +IL  V   
Sbjct: 740 PRCFHNLSAMANFSQSFSPTSFWGM-----VASGLTENAILVTKGMEMEYTKILGFVKGM 794

Query: 240 IVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
            +S N +   +P E+  L A Q LN S+N FT
Sbjct: 795 DLSCNFMYGEIPEELTGLLALQYLNLSNNRFT 826

Source: Malus baccata

Species: Malus baccata

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970625|gb|ACJ03073.1| HB09p [Malus floribunda]

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 112/276 (40%), Positives = 155/276 (56%), Gaps = 31/276 (11%)

Query: 15  LDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74
           L SN  +G LP++ ++L +L LS++SF GS+ HF CD+  E K+L  L L +N L G++P
Sbjct: 557 LGSNKFTGALPIVPTSLAWLDLSNSSFSGSVFHFFCDRPEEAKQLSILHLGNNLLTGKVP 616

Query: 75  DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL 134
           DCW S Q L  L L NN   GN+P S   L  L  L L  N L+G +P +L+NC++L  +
Sbjct: 617 DCWRSWQGLAALNLENNLLTGNVPMSMRYLQQLESLHLRNNHLYGELPHSLQNCSSLSVV 676

Query: 135 DV--------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
           D+              +  SR+ VLNLRSN+F G +P+  C L  LQILD+A N LSG I
Sbjct: 677 DLGGNGFVGSIPIWIGKSLSRLNVLNLRSNEFEGDIPSEICYLKNLQILDLARNKLSGTI 736

Query: 181 PNYINNVTGMVT-TNSFS----RSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNL 235
           P   +N++ M T + SFS    R+               +E + VV++   VEY EIL  
Sbjct: 737 PRCFHNLSAMATFSESFSSITFRTGTS------------VEASIVVTKGREVEYTEILGF 784

Query: 236 VMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
           V    +S N +   +P E+ +L A QSLN SHN FT
Sbjct: 785 VKGMDLSCNFMYGEIPEELTDLLALQSLNLSHNRFT 820

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970618|gb|ACJ03070.1| M18-S3Bp [Malus floribunda]

 Score =  184 bits (466), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/271 (40%), Positives = 158/271 (58%), Gaps = 19/271 (7%)

Query: 15  LDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74
           L SN  +G LP+++++L +L LS++SF GS+ HF CD+ +E K+LE L L +N+L G++P
Sbjct: 548 LGSNQFTGALPIVATSLFWLDLSNSSFSGSVFHFFCDRPDEPKQLEILHLGNNFLTGKVP 607

Query: 75  DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL 134
           DCWMS Q L  L L NN   GN+P S G L  L  L L  N L+G +P +L+NCT+L  +
Sbjct: 608 DCWMSWQYLGFLNLENNNLTGNVPMSMGYLQDLESLHLRNNHLYGELPHSLQNCTSLSVV 667

Query: 135 DV--------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
           D+              +  S + VL LRSNKF G +P   C L  LQILD+A N LSG I
Sbjct: 668 DLSENGFSGSIPIWIGKSLSGLHVLILRSNKFEGDIPNEVCYLKSLQILDLAHNKLSGMI 727

Query: 181 PNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTI 240
           P   +N++ +    +FS S    +   ++ +V   E A +V++   +EY++IL       
Sbjct: 728 PRCFHNLSALA---NFSESFSPRIFGSVNGEV--WENAILVTKGTEMEYSKILGFAKGMD 782

Query: 241 VSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
           +S N +   +P E+  L A QSLN S+N FT
Sbjct: 783 LSCNFMYGEIPKELTGLLALQSLNLSNNRFT 813

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	271
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.608	0.208	0.349	7.9e-23
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.583	0.176	0.337	2.6e-22
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.848	0.254	0.315	4.8e-22
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.583	0.165	0.36	1.3e-21
TAIR|locus:2825384	847	RLP12 "AT1G71400" [Arabidopsis	0.852	0.272	0.325	1.9e-21
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.915	0.225	0.284	2.8e-21
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.693	0.225	0.311	3.7e-21
TAIR|locus:2037313	1000	RLP13 "AT1G74170" [Arabidopsis	0.667	0.181	0.331	4e-21
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.952	0.206	0.298	4.4e-21
TAIR|locus:2046525	1124	AT2G33170 [Arabidopsis thalian	0.937	0.225	0.303	4.8e-21

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 7.9e-23, Sum P(2) = 7.9e-23
 Identities = 66/189 (34%), Positives = 99/189 (52%)

Query:    15 LDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74
             L SN   G  P+I   +  +  S+N F G I    C +     RL  L L++N   G +P
Sbjct:   382 LSSNAFKGSFPIIPPYVNIMAASNNYFTGGIPLIFCKRY----RLSLLDLSNNNFSGTIP 437

Query:    75 DCWMS-DQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALES 133
              C  +    L+ LKLSNN   G LP+    L   V LD+G N++ G +P +L NCT L+ 
Sbjct:   438 RCLTNVSLGLEALKLSNNSLTGRLPDIEDRL---VLLDVGHNQISGKLPRSLVNCTTLKF 494

Query:   134 LDVE-------------RFSRMVVLNLRSNKFHGPLPTRFCDLAI--LQILDIADNNLSG 178
             L+VE               +R+ ++ LRSN+FHGP+ +    L+   L+I+DI+ N+ +G
Sbjct:   495 LNVEGNHINDTFPFWLKALTRLEIIVLRSNRFHGPISSPEVSLSFTALRIIDISRNSFNG 554

Query:   179 AIP-NYINN 186
             ++P NY  N
Sbjct:   555 SLPQNYFAN 563

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
 Identities = 59/175 (33%), Positives = 91/175 (52%)

Query:    29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88
             S+L  L LS N F G I     + I    RL +L L+ N   G++P    +  +L  L L
Sbjct:    82 SHLTSLDLSYNRFSGQI----LNSIGNLSRLTSLDLSFNQFSGQIPSSIGNLSHLTFLGL 137

Query:    89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL-------------D 135
             S N+F G +P+S G+L+ L +L L  NR FG  P+++   + L +L              
Sbjct:   138 SGNRFFGQIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLSNLTNLHLSYNKYSGQIPSS 197

Query:   136 VERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGM 190
             +   S+++VL L  N F+G +P+ F +L  L  LD++ N L G  PN + N+TG+
Sbjct:   198 IGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFPNVLLNLTGL 252

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 4.8e-22, P = 4.8e-22
 Identities = 86/273 (31%), Positives = 129/273 (47%)

Query:    15 LDSNNMSGLLP----LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ 70
             L  NN SG LP    ++   +  + L  NSF G+I   LC    E   L+ L L  N+  
Sbjct:   573 LYENNFSGSLPQNIDVLMPRMEKIYLFSNSFTGNIPSSLC----EVSGLQILSLRKNHFS 628

Query:    71 GELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTA 130
             G  P CW     L  + +S N   G +P S G L  L  L L +N L G IP +L+NC+ 
Sbjct:   629 GSFPKCWHRQFMLWGIDVSENNLSGEIPESLGMLPSLSVLLLNQNSLEGKIPESLRNCSG 688

Query:   131 LESLD-------------VERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
             L ++D             V + S + +L L+SN F G +P   C++  L+ILD++ N +S
Sbjct:   689 LTNIDLGGNKLTGKLPSWVGKLSSLFMLRLQSNSFTGQIPDDLCNVPNLRILDLSGNKIS 748

Query:   178 GAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLV 236
             G IP  I+N+T +   TN+      Q+L       V ++ +A         EY  I N +
Sbjct:   749 GPIPKCISNLTAIARGTNN---EVFQNL-------VFIVTRAR--------EYEAIANSI 790

Query:   237 MVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNT 269
              +   S N++   +P E+  L   + LN S N+
Sbjct:   791 NL---SGNNISGEIPREILGLLYLRILNLSRNS 820

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
 Identities = 63/175 (36%), Positives = 87/175 (49%)

Query:    29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88
             S+L YL LS N F G I     + I    RL  L L DN   G+ P    +  +L  L L
Sbjct:   145 SHLTYLDLSSNHFSGQI----LNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDL 200

Query:    89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER---------- 138
             S N+F G  P+S G L+ L  L L  N+  G IP+++ N + L +LD+            
Sbjct:   201 SYNRFFGQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQIPSF 260

Query:   139 ---FSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGM 190
                 S++  L L SN F G +P+ F +L  L  L + DN LSG  PN + N+TG+
Sbjct:   261 IGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLLNLTGL 315

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2825384 RLP12 "AT1G71400" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 83/255 (32%), Positives = 122/255 (47%)

Query:    34 LGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS-DQNLKILKLSNNK 92
             L L+ NSF G I + +C K++    L  L L++N   G +P C  +   ++K L L +N 
Sbjct:   448 LDLNSNSFQGPIPYMIC-KLSS---LGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNN 503

Query:    93 FIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER------FSRMV--- 143
             F G LP+ F     LV LD+  N+L G  P +L NC ALE ++VE       F   +   
Sbjct:   504 FSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESL 563

Query:   144 ----VLNLRSNKFHGPLPTRFCDLAI--LQILDIADNNLSGAIPNY-INNVTGMVTTNSF 196
                 VLNLRSNKF+GPL  R   +    L+I+DI+ NN SG +P Y  +N   M T    
Sbjct:   564 PSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTT---L 620

Query:   197 SRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRN 256
             +    Q++            +  +V++   + +  I         S N +  N+P  +  
Sbjct:   621 TEEMDQYMTEFWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGY 680

Query:   257 LKATQSLNFSHNTFT 271
             LK  + LN S N FT
Sbjct:   681 LKELRVLNLSGNAFT 695

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 2.8e-21, P = 2.8e-21
 Identities = 77/271 (28%), Positives = 138/271 (50%)

Query:     8 TQLLFRSLDSNNMSGLLPL-ISS--NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKL 64
             + ++  +L +NN+SG +P  I++   LV L L+ N+ +G     LC ++N T    A++L
Sbjct:   433 SNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVT----AIEL 488

Query:    65 NDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPAT 124
               N  +G +P    +   L+ L+L++N F G LP   G L+ L  L++  N+L G +P+ 
Sbjct:   489 GQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSE 548

Query:   125 LKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYI 184
             + NC  L+ LD           +  N F G LP+    L  L++L +++NNLSG IP  +
Sbjct:   549 IFNCKMLQRLD-----------MCCNNFSGTLPSEVGSLYQLELLKLSNNNLSGTIPVAL 597

Query:   185 NNVTGMVTT----NSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTI 240
              N++ +       N F+ S  + L     + + L    + ++ E   E + ++ L  + +
Sbjct:   598 GNLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEFL-L 656

Query:   241 VSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
             ++ N+L   +P    NL +    NFS+N+ T
Sbjct:   657 LNNNNLSGEIPSSFANLSSLLGYNFSYNSLT 687

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
 Identities = 65/209 (31%), Positives = 101/209 (48%)

Query:     3 NLTKFTQLLFRSLDSNNMSGLLPLISSNLV---YLGLSDNSFLGSISHFLCDKINETKRL 59
             N T  ++L    +  NN+ GL+P   S LV   +L LS N+F G +   +   +N    L
Sbjct:   275 NTTSSSKLTELDVSYNNLDGLIPKSISTLVSLEHLELSHNNFRGQVPSSISKLVN----L 330

Query:    60 EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG 119
             + L L+ N   G++P       NL+ L LS+N F G +P+S   L  L  LDL  N+  G
Sbjct:   331 DGLYLSHNNFGGQVPSSIFKLVNLEHLDLSHNDFGGRVPSSISKLVNLSSLDLSYNKFEG 390

Query:   120 TIPATLKNCTALESLDVE-----RFSRMVVL---------NLRSNKFHGPLPTRFCDLAI 165
              +P  +   + L+S+D+       F R++ L         +L SN   GP+P   C+   
Sbjct:   391 HVPQCIWRSSKLDSVDLSYNSFNSFGRILELGDESLERDWDLSSNSLQGPIPQWICNFRF 450

Query:   166 LQILDIADNNLSGAIPNYINNVTGMVTTN 194
                LD ++N+L+G+IP  + N T     N
Sbjct:   451 FSFLDFSNNHLNGSIPQCLKNSTDFYMLN 479

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 4.0e-21, Sum P(2) = 4.0e-21
 Identities = 67/202 (33%), Positives = 108/202 (53%)

Query:     2 PNLTKFTQLLFRSLDSN----NMS-GLLPLISSNLVYLGLSDNSFLGSISHFLCDKINET 56
             P    FT+L   S+D+N    N+  G   L S N+  L +S+N   G I  +    I E 
Sbjct:   519 PEAANFTRLWVMSMDNNLFTGNIGKGFRSLPSLNV--LDISNNKLTGVIPSW----IGER 572

Query:    57 KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR 116
             + L AL+L++N L+GE+P    +   L++L LS+N+  G++P    S+     L L  N 
Sbjct:   573 QGLFALQLSNNMLEGEIPTSLFNISYLQLLDLSSNRLSGDIPPHVSSIYHGAVLLLQNNN 632

Query:   117 LFGTIPATLK-NCTALE------SLDVERF---SRMVVLNLRSNKFHGPLPTRFCDLAIL 166
             L G IP TL  N   L+      S ++  F     + +L LR N F G +P +FC L+ +
Sbjct:   633 LSGVIPDTLLLNVIVLDLRNNRLSGNLPEFINTQNISILLLRGNNFTGQIPHQFCSLSNI 692

Query:   167 QILDIADNNLSGAIPNYINNVT 188
             Q+LD+++N  +G+IP+ ++N +
Sbjct:   693 QLLDLSNNKFNGSIPSCLSNTS 714

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 4.4e-21, P = 4.4e-21
 Identities = 89/298 (29%), Positives = 139/298 (46%)

Query:     2 PNLTKFTQLLFRSLDSNNMSGLLPL----ISSNLVYLGLSDNSFLGSISHFLCDKINETK 57
             P++ +F  L+   L SN + G +P     +SS+L  L L  N   G I   L   +N   
Sbjct:    89 PSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLESLHLFSNLLSGDIPSQLGSLVN--- 145

Query:    58 RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117
              L++LKL DN L G +P+ + +  NL++L L++ +  G +P+ FG L  L  L L  N L
Sbjct:   146 -LKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNEL 204

Query:   118 FGTIPATLKNCTALE-----------SLDVE--RFSRMVVLNLRSNKFHGPLPTRFCDLA 164
              G IPA + NCT+L            SL  E  R   +  LNL  N F G +P++  DL 
Sbjct:   205 EGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDLV 264

Query:   165 ILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSRE 224
              +Q L++  N L G IP  +  +  + T +  S +    +H     +   M +   +   
Sbjct:   265 SIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHE----EFWRMNQLEFL--- 317

Query:   225 EVVEYNEILNLVMVTIVSRNDLLKN-----------VPLEVRNLKATQSLNFSHNTFT 271
              V+  N +   +  TI S N  LK            +P E+ N ++ + L+ S+NT T
Sbjct:   318 -VLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLT 374

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 4.8e-21, P = 4.8e-21
 Identities = 84/277 (30%), Positives = 127/277 (45%)

Query:     2 PNLTKFTQLLFRSLDSNNMSGLLP---LISSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
             P + + + L+  +L SN + G +P   L   +L+ L +  N   G     LC  +N    
Sbjct:   439 PFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQLRVVGNRLTGQFPTELCKLVN---- 494

Query:    59 LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
             L A++L+ N   G LP    + Q L+ L L+ N+F  NLPN    L+ LV  ++  N L 
Sbjct:   495 LSAIELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLT 554

Query:   119 GTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSG 178
             G IP+ + NC  L+ LD+ R           N F G LP     L  L+IL +++N  SG
Sbjct:   555 GPIPSEIANCKMLQRLDLSR-----------NSFIGSLPPELGSLHQLEILRLSENRFSG 603

Query:   179 AIPNYINNVTGMVTT----NSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILN 234
              IP  I N+T +       N FS S    L +   + + +    +  S E   E    L+
Sbjct:   604 NIPFTIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGN-LH 662

Query:   235 LVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
             L+M   ++ N L   +P    NL +    NFS+N  T
Sbjct:   663 LLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLT 699

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006486 "protein glycosylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031679 hypothetical protein (1024 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	271
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  102 bits (256), Expect = 1e-24
 Identities = 69/194 (35%), Positives = 96/194 (49%), Gaps = 23/194 (11%)

Query: 15  LDSNNMSGLLP--LISSNLVY-LGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG 71
           L  N+ SG LP       LVY L +S+N+  G I+     +  +   L+ L L  N   G
Sbjct: 411 LQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN----SRKWDMPSLQMLSLARNKFFG 466

Query: 72  ELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTAL 131
            LPD + S   L+ L LS N+F G +P   GSL+ L+ L L +N+L G IP  L +C  L
Sbjct: 467 GLPDSFGSK-RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525

Query: 132 ESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMV 191
            SLD           L  N+  G +P  F ++ +L  LD++ N LSG IP  + NV  +V
Sbjct: 526 VSLD-----------LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574

Query: 192 TTNSFSRSAQQHLH 205
             N     +  HLH
Sbjct: 575 QVN----ISHNHLH 584

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 83.7 bits (207), Expect = 3e-18
 Identities = 64/205 (31%), Positives = 95/205 (46%), Gaps = 35/205 (17%)

Query: 15  LDSNNMSGLLP----LISSNLVYLGLSDNSFLGSI------------------SHFLCDK 52
           L +N +SG +P      SS+L YL LS+N+F GSI                  S  + + 
Sbjct: 100 LSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND 159

Query: 53  INETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDL 112
           I     L+ L L  N L G++P+   +  +L+ L L++N+ +G +P   G +  L W+ L
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219

Query: 113 GKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLRSNKFHGPLPTR 159
           G N L G IP  +   T+L  LD+                  +  L L  NK  GP+P  
Sbjct: 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279

Query: 160 FCDLAILQILDIADNNLSGAIPNYI 184
              L  L  LD++DN+LSG IP  +
Sbjct: 280 IFSLQKLISLDLSDNSLSGEIPELV 304

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 80.3 bits (198), Expect = 5e-17
 Identities = 68/205 (33%), Positives = 96/205 (46%), Gaps = 26/205 (12%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLP-----LISSNLVYLGLSDNSFLGSISHFLCDKINET 56
            +LT  T L F +L SN + G +P     + S   +YLG   N+  G I +    +I   
Sbjct: 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY--NNLSGEIPY----EIGGL 235

Query: 57  KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR 116
             L  L L  N L G +P    + +NL+ L L  NK  G +P S  SL  L+ LDL  N 
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295

Query: 117 LFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNL 176
           L G IP  +     LE           +L+L SN F G +P     L  LQ+L +  N  
Sbjct: 296 LSGEIPELVIQLQNLE-----------ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Query: 177 SGAIPNYI---NNVTGM-VTTNSFS 197
           SG IP  +   NN+T + ++TN+ +
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLT 369

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.4 bits (193), Expect = 3e-16
 Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 19/195 (9%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLP--LISS-NLVYLGLSDNSFLGSISHFLCDKINETKRL 59
           NL K   L    L +NN++G +P  L SS NL  L L  NS  G I   L       + L
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA----CRSL 406

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG 119
             ++L DN   GELP  +     +  L +SNN   G + +    +  L  L L +N+ FG
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG 466

Query: 120 TIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGA 179
            +P            D     R+  L+L  N+F G +P +   L+ L  L +++N LSG 
Sbjct: 467 GLP------------DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514

Query: 180 IPNYINNVTGMVTTN 194
           IP+ +++   +V+ +
Sbjct: 515 IPDELSSCKKLVSLD 529

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 78.0 bits (192), Expect = 3e-16
 Identities = 60/160 (37%), Positives = 77/160 (48%), Gaps = 17/160 (10%)

Query: 8   TQLLFRSLDSNNMSGLLP--LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLN 65
             L   SL  N   G LP    S  L  L LS N F G++      K+     L  LKL+
Sbjct: 452 PSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR----KLGSLSELMQLKLS 507

Query: 66  DNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATL 125
           +N L GE+PD   S + L  L LS+N+  G +P SF  +  L  LDL +N+L G IP  L
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567

Query: 126 KNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAI 165
            N   +ESL        V +N+  N  HG LP+    LAI
Sbjct: 568 GN---VESL--------VQVNISHNHLHGSLPSTGAFLAI 596

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 77.2 bits (190), Expect = 6e-16
 Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 18/167 (10%)

Query: 18  NNMSGLLPLIS---SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74
           NN++G +P       NL YL L  N   G I       I   ++L +L L+DN L GE+P
Sbjct: 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP----PSIFSLQKLISLDLSDNSLSGEIP 301

Query: 75  DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL 134
           +  +  QNL+IL L +N F G +P +  SL  L  L L  N+  G IP            
Sbjct: 302 ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK----------- 350

Query: 135 DVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIP 181
           ++ + + + VL+L +N   G +P   C    L  L +  N+L G IP
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 65.2 bits (159), Expect = 5e-12
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
           ++ L L++  L+G +P+     ++L+ + LS N   GN+P S GS+  L  LDL  N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 119 GTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLP 157
           G+IP +L   T+L            +LNL  N   G +P
Sbjct: 480 GSIPESLGQLTSLR-----------ILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 34  LGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKF 93
           LGL +    G    F+ + I++ + L+++ L+ N ++G +P    S  +L++L LS N F
Sbjct: 423 LGLDNQGLRG----FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 94  IGNLPNSFGSLAFLVWLDLGKNRLFGTIPATL 125
            G++P S G L  L  L+L  N L G +PA L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 12/102 (11%)

Query: 83  LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRM 142
           +  + LS     G + ++   L ++  ++L  N+L G IP  +   +          S +
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS----------SSL 120

Query: 143 VVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYI 184
             LNL +N F G +P     +  L+ LD+++N LSG IPN I
Sbjct: 121 RYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDI 160

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 14/56 (25%), Positives = 30/56 (53%)

Query: 135 DVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGM 190
           D+ +   +  +NL  N   G +P     +  L++LD++ N+ +G+IP  +  +T +
Sbjct: 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 14  SLDSNNMSGLLPLISSNLVYL---GLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ 70
            LD+  + G +P   S L +L    LS NS  G+I       +     LE L L+ N   
Sbjct: 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP----PSLGSITSLEVLDLSYNSFN 479

Query: 71  GELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSL 104
           G +P+      +L+IL L+ N   G +P + G  
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	271
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.84
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.83
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.76
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.74
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.71
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.69
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.64
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.61
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.6
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.6
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.6
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.44
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.35
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.34
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.09
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
PLN03150	623	hypothetical protein; Provisional	99.04
PLN03150	623	hypothetical protein; Provisional	99.02
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.91
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.9
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.89
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.67
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.62
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.52
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.48
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.41
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.27
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.21
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.12
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.08
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.95
PRK15386	426	type III secretion protein GogB; Provisional	97.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.86
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.64
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.51
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.43
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.26
PRK15386	426	type III secretion protein GogB; Provisional	97.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.11
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.5
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.37
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.32
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.17
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.07
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.25
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.16
KOG4308	478	consensus LRR-containing protein [Function unknown	95.02
KOG4308	478	consensus LRR-containing protein [Function unknown	94.4
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.96
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.9
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.45
KOG1947	482	consensus Leucine rich repeat proteins, some prote	90.29
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.75
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.17
smart00370	26	LRR Leucine-rich repeats, outliers.	89.08
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.08
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.72
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	88.57
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	84.82

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=3.4e-27  Score=225.66  Aligned_cols=184  Identities=35%  Similarity=0.540  Sum_probs=117.0

Q ss_pred             CccCCCcccEEECcCCCCCCCcccc----CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCcccc
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLI----SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWM   78 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~   78 (271)
                      ++.++++|+.|++++|.+.+.+|..    +.+|++|++++|.+++.+|..      .++.|++|++++|.+++..|..+.
T Consensus        88 ~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~------~l~~L~~L~Ls~n~~~~~~p~~~~  161 (968)
T PLN00113         88 AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG------SIPNLETLDLSNNMLSGEIPNDIG  161 (968)
T ss_pred             HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCcc------ccCCCCEEECcCCcccccCChHHh
Confidence            3667788888888888887766653    457778888877776655531      255666666666666655666666


Q ss_pred             CCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccEE
Q 043038           79 SDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVL  145 (271)
Q Consensus        79 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L  145 (271)
                      .+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++             ..+++|++|
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL  241 (968)
T ss_pred             cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence            6666666666666665556666666666666666666665556666666666666655             334456666


Q ss_pred             EeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc
Q 043038          146 NLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT  192 (271)
Q Consensus       146 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  192 (271)
                      ++++|.+++..|..+..+++|+.|++++|.+.+.+|..+.++++|+.
T Consensus       242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  288 (968)
T PLN00113        242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS  288 (968)
T ss_pred             ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence            66666666556666666666666666666665555555555555544

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=3.2e-27  Score=225.80  Aligned_cols=182  Identities=31%  Similarity=0.453  Sum_probs=90.6

Q ss_pred             CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038            6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN   82 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   82 (271)
                      .+++|++|++++|.+.+..|..   +++|++|++++|.+.+.+|..+..    +++|++|++++|.+.+..|..+..+++
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~----l~~L~~L~L~~n~l~~~~p~~l~~l~~  213 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN----LTSLEFLTLASNQLVGQIPRELGQMKS  213 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh----CcCCCeeeccCCCCcCcCChHHcCcCC
Confidence            3555666666666655555543   345556666665555444443332    555555555555555445555555555


Q ss_pred             CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccEEEecc
Q 043038           83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLRS  149 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L~l~~  149 (271)
                      |+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++             ..+++|+.|++++
T Consensus       214 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  293 (968)
T PLN00113        214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD  293 (968)
T ss_pred             ccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence            555555555555444555555555555555555554444544555555554444             1223444444444


Q ss_pred             CccCCCCchhhhcCccccEEeccCCccceecCcccccccCCc
Q 043038          150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMV  191 (271)
Q Consensus       150 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  191 (271)
                      |.+++.+|..+..+++|+.|++++|.+.+..|..+..++.|+
T Consensus       294 n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  335 (968)
T PLN00113        294 NSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ  335 (968)
T ss_pred             CeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC
Confidence            444444444444444444444444444444444444333333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=1.9e-25  Score=190.65  Aligned_cols=258  Identities=17%  Similarity=0.126  Sum_probs=168.0

Q ss_pred             ccCCCcccEEECcCCCCCCCccccCC---CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPLISS---NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD   80 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~~~~---~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l   80 (271)
                      ++.++.|+.||++.|.|+.....+++   +++.|++++|.++..-..    .|..+.+|..|.|+.|.++...+..|+.+
T Consensus       145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~----~F~~lnsL~tlkLsrNrittLp~r~Fk~L  220 (873)
T KOG4194|consen  145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETG----HFDSLNSLLTLKLSRNRITTLPQRSFKRL  220 (873)
T ss_pred             HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccc----cccccchheeeecccCcccccCHHHhhhc
Confidence            44455666666666666544333333   677777777777652222    23346677777777777774555567777


Q ss_pred             CCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccEEEe
Q 043038           81 QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNL  147 (271)
Q Consensus        81 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L~l  147 (271)
                      ++|+.|++.+|+|.-.---.|..+++|+.+.+.+|.+..--.+.++.+..+++|++             .+++.|++|++
T Consensus       221 ~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l  300 (873)
T KOG4194|consen  221 PKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL  300 (873)
T ss_pred             chhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhcc
Confidence            77777777777776221234666777777777777766333445666777777776             45667888888


Q ss_pred             ccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhcee---
Q 043038          148 RSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASV---  220 (271)
Q Consensus       148 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~---  220 (271)
                      ++|.|....++.+...+.|+.|++++|+++...+..+..+..|..    .|.++.+     +.....-...+..+++   
T Consensus       301 S~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l-----~e~af~~lssL~~LdLr~N  375 (873)
T KOG4194|consen  301 SYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL-----AEGAFVGLSSLHKLDLRSN  375 (873)
T ss_pred             chhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH-----HhhHHHHhhhhhhhcCcCC
Confidence            888888777888888888888888888888555566665665555    5555543     2222211112222211   


Q ss_pred             ---ccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038          221 ---VSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       221 ---~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                         +..+.....+.++++|+.|++.+|++-.+....|.+++.|++||+.+|.|
T Consensus       376 ~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  376 ELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             eEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence               12233444556799999999999998665556889999999999999876

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.87  E-value=1.4e-23  Score=180.89  Aligned_cols=252  Identities=23%  Similarity=0.272  Sum_probs=142.0

Q ss_pred             ccCCCcccEEECcCCCCC--CCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCc-ccc
Q 043038            4 LTKFTQLLFRSLDSNNMS--GLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPD-CWM   78 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~--~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~   78 (271)
                      ++.++.|+.+++..|.+.  |.++..  +..|++|++++|+++. +|..+..    .+++-+|++|+|+|. .+|. -|.
T Consensus        74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~----AKn~iVLNLS~N~Ie-tIPn~lfi  147 (1255)
T KOG0444|consen   74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEY----AKNSIVLNLSYNNIE-TIPNSLFI  147 (1255)
T ss_pred             hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhh----hcCcEEEEcccCccc-cCCchHHH
Confidence            455666666777666665  333333  3577778888888764 6655554    567777888888877 4444 355


Q ss_pred             CCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec----------------------
Q 043038           79 SDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----------------------  136 (271)
Q Consensus        79 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----------------------  136 (271)
                      ++..|-.||+++|++. .+|+.+..+..|++|.+++|.+.-.--..+..+++|+.|.+                      
T Consensus       148 nLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d  226 (1255)
T KOG0444|consen  148 NLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD  226 (1255)
T ss_pred             hhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence            6777777888888877 56666777777777777777764211122233333333333                      


Q ss_pred             ---------------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccc
Q 043038          137 ---------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFS  197 (271)
Q Consensus       137 ---------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~  197 (271)
                                     ..+++|..|++++|+|+ .+......|.++++|+++.|+++ .+|+++.+++.|+.    .|.++
T Consensus       227 vDlS~N~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  227 VDLSENNLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             ccccccCCCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence                           22344555555555554 33334444555555556666655 66666666666665    33332


Q ss_pred             cccccccccccchhh-hhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCC
Q 043038          198 RSAQQHLHVPLDVDV-ILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN  268 (271)
Q Consensus       198 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  268 (271)
                      -.   .+|.....-. .............+|+-...|..|+.|.|+.|++.. +|+.+--++-|++||+..|
T Consensus       305 Fe---GiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  305 FE---GIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             cc---CCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCC
Confidence            21   1333322111 111222333344455555566666666666666543 6666666666666666655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=2.1e-22  Score=172.26  Aligned_cols=254  Identities=22%  Similarity=0.253  Sum_probs=147.9

Q ss_pred             CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038            6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN   82 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   82 (271)
                      ++++|+.+++.+|.++. +|..   ..+++.|++.+|.+...-.+.+.    -++.|++||||.|.|+..--..|..-.+
T Consensus       100 nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L~~N~I~sv~se~L~----~l~alrslDLSrN~is~i~~~sfp~~~n  174 (873)
T KOG4194|consen  100 NLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDLRHNLISSVTSEELS----ALPALRSLDLSRNLISEIPKPSFPAKVN  174 (873)
T ss_pred             cCCcceeeeeccchhhh-cccccccccceeEEeeeccccccccHHHHH----hHhhhhhhhhhhchhhcccCCCCCCCCC
Confidence            44444444554444442 2221   22455555555554432222222    2445555555555555222223333345


Q ss_pred             CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCc-cccCCCCccEEec-------------------------
Q 043038           83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA-TLKNCTALESLDV-------------------------  136 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~l~~L~~L~l-------------------------  136 (271)
                      +++|+++.|+|+..-.+.|..+.+|..+.+++|+++ .+|. .+..+++|+.|++                         
T Consensus       175 i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  175 IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             ceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence            555555555555444445555555555555555555 3332 3333555555544                         


Q ss_pred             ------------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----cccccccc
Q 043038          137 ------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSA  200 (271)
Q Consensus       137 ------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~  200 (271)
                                  ..+.+++.|+++.|.++..-..++..+..|+.|++++|.|....++..+.++.|..    .|.+...+
T Consensus       254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             hcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCC
Confidence                        44567777888888877555667778888888888888888667777776666665    66676643


Q ss_pred             ccccccccchhhhhhhhceecccc--ch-hhHHHHHhhHhhhhhcCCcccc---cccHhhhccCCCCEEEccCCCC
Q 043038          201 QQHLHVPLDVDVILMEKASVVSRE--EV-VEYNEILNLVMVTIVSRNDLLK---NVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      .     ........++.+.+....  .+ .-.+.++.+|+.|||+.|.+..   +....|.+++.|+.|++.||+|
T Consensus       334 ~-----~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql  404 (873)
T KOG4194|consen  334 E-----GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL  404 (873)
T ss_pred             h-----hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee
Confidence            3     333334444444333221  11 2335688999999999999753   3566788999999999999986

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.84  E-value=5.2e-23  Score=168.83  Aligned_cols=110  Identities=21%  Similarity=0.214  Sum_probs=68.2

Q ss_pred             CCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchh-hhhhhhceeccccch-hh
Q 043038          155 PLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVD-VILMEKASVVSREEV-VE  228 (271)
Q Consensus       155 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~  228 (271)
                      .+|..++.+++|..|++++|-+. .+|..++.+..|+.    .|.+...     |.....- ............+.+ ++
T Consensus       426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~l-----P~~~y~lq~lEtllas~nqi~~vd~~  499 (565)
T KOG0472|consen  426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRML-----PECLYELQTLETLLASNNQIGSVDPS  499 (565)
T ss_pred             cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccccc-----hHHHhhHHHHHHHHhccccccccChH
Confidence            44555666677777777777665 66666666666555    3333331     2111100 001111111122222 23


Q ss_pred             HHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          229 YNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       229 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      -.+.+.+|..|||.+|.+. .+|.++++|.+|++|++.||.|.
T Consensus       500 ~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  500 GLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            2578999999999999996 59999999999999999999874

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.83  E-value=5e-22  Score=171.49  Aligned_cols=247  Identities=26%  Similarity=0.290  Sum_probs=185.2

Q ss_pred             CccCCCcccEEECcCCCCCCCccccC---CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLIS---SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS   79 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   79 (271)
                      .|-++..|+.||+++|.+.. .|..+   +++-+|++++|.+.. ||..++-   ++..|-.|++|+|++. .+|.-+..
T Consensus        98 diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~Iet-IPn~lfi---nLtDLLfLDLS~NrLe-~LPPQ~RR  171 (1255)
T KOG0444|consen   98 DIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIET-IPNSLFI---NLTDLLFLDLSNNRLE-MLPPQIRR  171 (1255)
T ss_pred             hhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCcccc-CCchHHH---hhHhHhhhccccchhh-hcCHHHHH
Confidence            35678889999999999975 44443   588899999999975 7766553   4677888899999988 67777788


Q ss_pred             CCCCCEEEccCCccc-------------------------ccCCcccccCCCccEEEccCCccccccCccccCCCCccEE
Q 043038           80 DQNLKILKLSNNKFI-------------------------GNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL  134 (271)
Q Consensus        80 l~~L~~L~l~~n~~~-------------------------~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L  134 (271)
                      +..|+.|++++|.+.                         .-+|.++..+.+|..++++.|.+. ..|+.+..+++|+.|
T Consensus       172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrL  250 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRL  250 (1255)
T ss_pred             HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhhee
Confidence            888888888888652                         114555666778999999999988 889999999999999


Q ss_pred             ec------------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc-eecCcccccccCCcc----ccccc
Q 043038          135 DV------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS-GAIPNYINNVTGMVT----TNSFS  197 (271)
Q Consensus       135 ~l------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~----~n~~~  197 (271)
                      ++            +.+.+|++|+++.|+++ .+|..+++++.|+.|.+.+|+++ .-+|+-++++.+|..    .|.+.
T Consensus       251 NLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  251 NLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE  329 (1255)
T ss_pred             ccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence            88            55678999999999998 89999999999999999999986 246888999988887    44444


Q ss_pred             cccccccccccchhhhhhhhceec--cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEE
Q 043038          198 RSAQQHLHVPLDVDVILMEKASVV--SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSL  263 (271)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  263 (271)
                      -     .|..+. .+..+..+.+.  ..-..|+.+.-++-|..||+..|.-.-..|..-..-++|+.-
T Consensus       330 l-----VPEglc-RC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefY  391 (1255)
T KOG0444|consen  330 L-----VPEGLC-RCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFY  391 (1255)
T ss_pred             c-----Cchhhh-hhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceee
Confidence            3     333322 22333333333  344567888889999999999988543344433333444443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.76  E-value=1.5e-21  Score=160.41  Aligned_cols=224  Identities=26%  Similarity=0.337  Sum_probs=124.3

Q ss_pred             ccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038           10 LLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK   87 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   87 (271)
                      +..+++++|.+....+..  +..+.++++++|.+.. .|.++..    +..++.++.++|++. .+|..+..+..+..++
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~----l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQ-LPAAIGE----LEALKSLNVSHNKLS-ELPEQIGSLISLVKLD  120 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccchhhh-CCHHHHH----HHHHHHhhcccchHh-hccHHHhhhhhhhhhh
Confidence            344555555555433332  3455556666665554 3333332    445555555555555 5555555555555555


Q ss_pred             ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------------CCCCcccEEEeccCccCCC
Q 043038           88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------------ERFSRMVVLNLRSNKFHGP  155 (271)
Q Consensus        88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------------~~~~~L~~L~l~~n~l~~~  155 (271)
                      .++|.+. .+++.++.+-.+..++..+|.+. ..|++++.+.++..+++            -.++.|+++|...|.++ .
T Consensus       121 ~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-t  197 (565)
T KOG0472|consen  121 CSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-T  197 (565)
T ss_pred             cccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-c
Confidence            5555554 44445555555555555555555 45555555444443333            11334556667777775 6


Q ss_pred             CchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHH
Q 043038          156 LPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNE  231 (271)
Q Consensus       156 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (271)
                      +|+.++.+..|..|++..|++. ++| .|+.|+.|..    .|.+..     +|+..                     .+
T Consensus       198 lP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~-----lpae~---------------------~~  249 (565)
T KOG0472|consen  198 LPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEM-----LPAEH---------------------LK  249 (565)
T ss_pred             CChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHh-----hHHHH---------------------hc
Confidence            7778888888888888888886 666 6777776665    344443     22111                     12


Q ss_pred             HHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          232 ILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       232 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      .++++..||+++|++. ++|++++-+++|+.||+|+|.||
T Consensus       250 ~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is  288 (565)
T KOG0472|consen  250 HLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS  288 (565)
T ss_pred             ccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc
Confidence            4455555666666653 46666666666666666666553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.74  E-value=2.8e-17  Score=149.96  Aligned_cols=225  Identities=22%  Similarity=0.254  Sum_probs=144.9

Q ss_pred             CcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038            8 TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK   87 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   87 (271)
                      .+++.|++.+|.++. +|..+++|++|++++|.++. +|..       .++|++|++++|.++ .+|..+   ..|+.|+
T Consensus       222 ~~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lts-LP~l-------p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~  288 (788)
T PRK15387        222 AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPVL-------PPGLLELSIFSNPLT-HLPALP---SGLCKLW  288 (788)
T ss_pred             cCCCEEEccCCcCCC-CCCCCCCCcEEEecCCccCc-ccCc-------ccccceeeccCCchh-hhhhch---hhcCEEE
Confidence            368899999998885 56667899999999999885 4532       357788888888877 455432   4577788


Q ss_pred             ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-----C----CCCcccEEEeccCccCCCCch
Q 043038           88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-----E----RFSRMVVLNLRSNKFHGPLPT  158 (271)
Q Consensus        88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-----~----~~~~L~~L~l~~n~l~~~~~~  158 (271)
                      +++|+++ .+|..   .++|+.|++++|.+. .+|.....   |+.|++     .    ...+|+.|++++|++++ +|.
T Consensus       289 Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~-~Lp~lp~~---L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~-LP~  359 (788)
T PRK15387        289 IFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPALPSE---LCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS-LPT  359 (788)
T ss_pred             CcCCccc-ccccc---ccccceeECCCCccc-cCCCCccc---ccccccccCccccccccccccceEecCCCccCC-CCC
Confidence            8888877 44442   356888888888777 34442222   333333     1    11367888888888873 443


Q ss_pred             hhhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccchhhhhhhhcee--ccccchhhHHHHHhh
Q 043038          159 RFCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASV--VSREEVVEYNEILNL  235 (271)
Q Consensus       159 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  235 (271)
                      .   ..+|+.|++++|++. .+|....++..|.. .|.+.+.+     ....    .+..+.+  .....++.   ...+
T Consensus       360 l---p~~L~~L~Ls~N~L~-~LP~l~~~L~~LdLs~N~Lt~LP-----~l~s----~L~~LdLS~N~LssIP~---l~~~  423 (788)
T PRK15387        360 L---PSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSLP-----VLPS----ELKELMVSGNRLTSLPM---LPSG  423 (788)
T ss_pred             C---Ccccceehhhccccc-cCcccccccceEEecCCcccCCC-----Cccc----CCCEEEccCCcCCCCCc---chhh
Confidence            2   245667777777776 45655444444443 55555422     1110    0111111  11122332   2346


Q ss_pred             HhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          236 VMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       236 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      |+.|++++|.+. .+|..+..+++|+.+++++|.|+
T Consensus       424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence            889999999996 59999999999999999999885

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.72  E-value=8.6e-17  Score=147.33  Aligned_cols=213  Identities=24%  Similarity=0.363  Sum_probs=111.1

Q ss_pred             cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038            9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL   88 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   88 (271)
                      .++.|++++|.+....+..+++|+.|++++|.++. +|..++      ..|+.|++++|.++ .+|..+.  .+|+.|++
T Consensus       200 ~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lts-LP~~l~------~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        200 QITTLILDNNELKSLPENLQGNIKTLYANSNQLTS-IPATLP------DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             CCcEEEecCCCCCcCChhhccCCCEEECCCCcccc-CChhhh------ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            45666666666654332234466666666666653 443332      24666666666665 4554432  35666666


Q ss_pred             cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec----------CCCCcccEEEeccCccCCCCch
Q 043038           89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----------ERFSRMVVLNLRSNKFHGPLPT  158 (271)
Q Consensus        89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----------~~~~~L~~L~l~~n~l~~~~~~  158 (271)
                      ++|+++ .+|..+.  ++|+.|++++|.++ .+|..+.  ++|+.|++          ...++|+.|++++|.+++ +|.
T Consensus       270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~  342 (754)
T PRK15370        270 FHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPA  342 (754)
T ss_pred             cCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCccccccceeccccCCcccc-CCh
Confidence            666666 4444432  35666666666665 3443322  12222222          112345555555555542 333


Q ss_pred             hhhcCccccEEeccCCccceecCcccc-cccCCcc-ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhH
Q 043038          159 RFCDLAILQILDIADNNLSGAIPNYIN-NVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLV  236 (271)
Q Consensus       159 ~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  236 (271)
                      .+.  ++|+.|++++|+++ .+|..+. .+..|.. .|.+.                           .++..  ...+|
T Consensus       343 ~l~--~sL~~L~Ls~N~L~-~LP~~lp~~L~~LdLs~N~Lt---------------------------~LP~~--l~~sL  390 (754)
T PRK15370        343 SLP--PELQVLDVSKNQIT-VLPETLPPTITTLDVSRNALT---------------------------NLPEN--LPAAL  390 (754)
T ss_pred             hhc--CcccEEECCCCCCC-cCChhhcCCcCEEECCCCcCC---------------------------CCCHh--HHHHH
Confidence            332  34555555555554 3333221 1111111 22222                           12221  22479


Q ss_pred             hhhhhcCCcccccccHhh----hccCCCCEEEccCCCCC
Q 043038          237 MVTIVSRNDLLKNVPLEV----RNLKATQSLNFSHNTFT  271 (271)
Q Consensus       237 ~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~i~  271 (271)
                      +.|++++|++.. +|..+    ..++.+..+++.+|.|+
T Consensus       391 ~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        391 QIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence            999999999874 66654    44588999999999874

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.71  E-value=3.5e-19  Score=130.90  Aligned_cols=167  Identities=29%  Similarity=0.413  Sum_probs=137.6

Q ss_pred             CCccCCCcccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038            2 PNLTKFTQLLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS   79 (271)
Q Consensus         2 ~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   79 (271)
                      |.+-++.+++.|.+++|.++.+.|..  +.+|+.|++.+|+++. .|..+..    +++|+.|+++.|++. ..|..|+.
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~-lp~~iss----l~klr~lnvgmnrl~-~lprgfgs  100 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE-LPTSISS----LPKLRILNVGMNRLN-ILPRGFGS  100 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh-cChhhhh----chhhhheecchhhhh-cCccccCC
Confidence            45667788888999999998776654  6789999999999875 5555444    899999999999988 88999999


Q ss_pred             CCCCCEEEccCCccc-ccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCch
Q 043038           80 DQNLKILKLSNNKFI-GNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPT  158 (271)
Q Consensus        80 l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~  158 (271)
                      ++.|+.||+++|.+. ...|+.|..++.|+.++++.|-+. .+|..++++++|+.|.           +.+|.+- .+|.
T Consensus       101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~-----------lrdndll-~lpk  167 (264)
T KOG0617|consen  101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILS-----------LRDNDLL-SLPK  167 (264)
T ss_pred             CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEe-----------eccCchh-hCcH
Confidence            999999999988775 467888888899999999999888 7888888777666554           7788776 6899


Q ss_pred             hhhcCccccEEeccCCccceecCccccccc
Q 043038          159 RFCDLAILQILDIADNNLSGAIPNYINNVT  188 (271)
Q Consensus       159 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  188 (271)
                      .++.+..|++|.+.+|+++ .+|..++++.
T Consensus       168 eig~lt~lrelhiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  168 EIGDLTRLRELHIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             HHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence            9999999999999999998 8888777654

>PLN03210 Resistant to P

Probab=99.71  E-value=2.5e-16  Score=152.44  Aligned_cols=251  Identities=22%  Similarity=0.213  Sum_probs=130.8

Q ss_pred             CCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038            7 FTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL   83 (271)
Q Consensus         7 ~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L   83 (271)
                      +.+|+.|++.++.+.. +|..   +++|+.++++++.....+|.     +..+++|+.|++++|.....+|..+..+++|
T Consensus       610 ~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L  683 (1153)
T PLN03210        610 PENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKL  683 (1153)
T ss_pred             ccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCC
Confidence            4556666666665543 2221   34566666665543333332     2225555666665554323455555555555


Q ss_pred             CEEEccCCcccccCCcccccCCCc---------------------cEEEccCCccccccCccccCCCCccEEecCC----
Q 043038           84 KILKLSNNKFIGNLPNSFGSLAFL---------------------VWLDLGKNRLFGTIPATLKNCTALESLDVER----  138 (271)
Q Consensus        84 ~~L~l~~n~~~~~~~~~~~~l~~L---------------------~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~----  138 (271)
                      +.|++++|.....+|..+ .+++|                     +.|++++|.+. .+|..+ .+++|+.|++..    
T Consensus       684 ~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~  760 (1153)
T PLN03210        684 EDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE  760 (1153)
T ss_pred             CEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence            555555543222333322 34444                     44555555444 344332 244555554422    


Q ss_pred             ----------------CCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcccccccccccc
Q 043038          139 ----------------FSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQ  202 (271)
Q Consensus       139 ----------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~  202 (271)
                                      +++|+.|++++|.....+|..++.+++|+.|++++|...+.+|..+ .+++|+..+.-......
T Consensus       761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~  839 (1153)
T PLN03210        761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR  839 (1153)
T ss_pred             hccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccc
Confidence                            3578888998887666788889999999999999875434666654 45555441110000011


Q ss_pred             ccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCC
Q 043038          203 HLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNT  269 (271)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  269 (271)
                      .+|... .+... ..+.......+|.....+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus       840 ~~p~~~-~nL~~-L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        840 TFPDIS-TNISD-LNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccccc-cccCE-eECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            122110 00000 011111223445555667777777777755334466667777777777777763

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=2.3e-19  Score=131.85  Aligned_cols=160  Identities=30%  Similarity=0.421  Sum_probs=98.5

Q ss_pred             CCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEe
Q 043038           56 TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLD  135 (271)
Q Consensus        56 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~  135 (271)
                      +...+.|.+|+|+++ .+|..++.+.+|+.|++++|+++ ..|..+..+++|+.++++.|++. ..|.+++..+.|+   
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le---  105 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE---  105 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh---
Confidence            555666666666666 55555666666666666666666 56666666666666666666666 5666666554433   


Q ss_pred             cCCCCcccEEEeccCccCC-CCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccch
Q 043038          136 VERFSRMVVLNLRSNKFHG-PLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDV  210 (271)
Q Consensus       136 l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~  210 (271)
                              .||+++|.+.+ .+|..|..+..|+.|.+++|.+. .+|..++++.+|+.    .|.+-.            
T Consensus       106 --------vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~------------  164 (264)
T KOG0617|consen  106 --------VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS------------  164 (264)
T ss_pred             --------hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh------------
Confidence                    33355555542 45666666666666666666665 56666666665554    111111            


Q ss_pred             hhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccC
Q 043038          211 DVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLK  258 (271)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~  258 (271)
                                     .+...+.++.|+.|++.+|+++ .+|.++..+.
T Consensus       165 ---------------lpkeig~lt~lrelhiqgnrl~-vlppel~~l~  196 (264)
T KOG0617|consen  165 ---------------LPKEIGDLTRLRELHIQGNRLT-VLPPELANLD  196 (264)
T ss_pred             ---------------CcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence                           1222356788899999999986 5777776543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.69  E-value=2.1e-18  Score=154.56  Aligned_cols=38  Identities=26%  Similarity=0.248  Sum_probs=25.7

Q ss_pred             HHHhhHhhhhhcCCccccc-ccHhhhccCCCCEEEccCCC
Q 043038          231 EILNLVMVTIVSRNDLLKN-VPLEVRNLKATQSLNFSHNT  269 (271)
Q Consensus       231 ~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~  269 (271)
                      ..++.|+.+|++.|++... +|...-. ++|++||++||.
T Consensus       449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  449 AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            4677788888888887643 3332222 788888888874

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.64  E-value=1.5e-17  Score=136.60  Aligned_cols=211  Identities=19%  Similarity=0.203  Sum_probs=128.6

Q ss_pred             CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC-CcccccCCcccccCCCc
Q 043038           29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN-NKFIGNLPNSFGSLAFL  107 (271)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L  107 (271)
                      +..+.+++..|+|+...+.+    |+.+++|+.+++++|.|+...|.+|.++..+..|-+.+ |+|+....+.|.++.++
T Consensus        67 ~~tveirLdqN~I~~iP~~a----F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGA----FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             CcceEEEeccCCcccCChhh----ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            46677777777776533333    33477777777777777766777777777655554444 77764433445455444


Q ss_pred             cE------------------------EEccCCccccccCc-cccCCCCccEEec-------------------------C
Q 043038          108 VW------------------------LDLGKNRLFGTIPA-TLKNCTALESLDV-------------------------E  137 (271)
Q Consensus       108 ~~------------------------l~l~~n~l~~~~~~-~~~~l~~L~~L~l-------------------------~  137 (271)
                      +.                        |.+..|.++ .++. .+..+.+++.+.+                         +
T Consensus       143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             HHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            44                        444444444 2222 3333444443333                         0


Q ss_pred             C----------------------CCcccEE---EeccCccCCCC-chhhhcCccccEEeccCCccceecCcccccccCCc
Q 043038          138 R----------------------FSRMVVL---NLRSNKFHGPL-PTRFCDLAILQILDIADNNLSGAIPNYINNVTGMV  191 (271)
Q Consensus       138 ~----------------------~~~L~~L---~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  191 (271)
                      +                      ...++.+   -.+.+...+.- ...|..+++|+.+++++|+++..-+.+|+....++
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence            0                      0001111   01111122122 24577899999999999999977778887776665


Q ss_pred             c----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccC
Q 043038          192 T----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSH  267 (271)
Q Consensus       192 ~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  267 (271)
                      .    .|.+...                          ....+.++..|+.|+|.+|+|+..-|..|..+..|..|++-.
T Consensus       302 eL~L~~N~l~~v--------------------------~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  302 ELYLTRNKLEFV--------------------------SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             hhhcCcchHHHH--------------------------HHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence            5    3444332                          122345788899999999999988899999999999999988


Q ss_pred             CCC
Q 043038          268 NTF  270 (271)
Q Consensus       268 n~i  270 (271)
                      |.+
T Consensus       356 Np~  358 (498)
T KOG4237|consen  356 NPF  358 (498)
T ss_pred             Ccc
Confidence            764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.63  E-value=2.6e-15  Score=137.29  Aligned_cols=221  Identities=22%  Similarity=0.251  Sum_probs=144.5

Q ss_pred             cccEEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038            9 QLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK   87 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   87 (271)
                      .-..|+++++.+.. +|.. .++++.|++.+|.++. +|..       .++|++|++++|+++ .+|..   .++|+.|+
T Consensus       202 ~~~~LdLs~~~Lts-LP~~l~~~L~~L~L~~N~Lt~-LP~l-------p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~  268 (788)
T PRK15387        202 GNAVLNVGESGLTT-LPDCLPAHITTLVIPDNNLTS-LPAL-------PPELRTLEVSGNQLT-SLPVL---PPGLLELS  268 (788)
T ss_pred             CCcEEEcCCCCCCc-CCcchhcCCCEEEccCCcCCC-CCCC-------CCCCcEEEecCCccC-cccCc---ccccceee
Confidence            35678999999985 5554 4689999999999986 5532       578999999999999 56643   46899999


Q ss_pred             ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecC---------CCCcccEEEeccCccCCCCch
Q 043038           88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVE---------RFSRMVVLNLRSNKFHGPLPT  158 (271)
Q Consensus        88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~---------~~~~L~~L~l~~n~l~~~~~~  158 (271)
                      +++|.+. .+|..   .++|+.|++++|.++ .+|..   .++|+.|+++         ...+|+.|++++|.++ .+|.
T Consensus       269 Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~-~LP~  339 (788)
T PRK15387        269 IFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT-SLPT  339 (788)
T ss_pred             ccCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCCcccccccccccCccc-cccc
Confidence            9999988 55543   357889999999998 56653   3557777761         1235777788888886 3443


Q ss_pred             hhhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccchhhhhhhhceec--cccchhhHHHHHhh
Q 043038          159 RFCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVV--SREEVVEYNEILNL  235 (271)
Q Consensus       159 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  235 (271)
                      .   ..+|+.|++++|+++ .+|....++..|.. .|.+...     |....    .+..+++.  ....++.   ..++
T Consensus       340 l---p~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~L-----P~l~~----~L~~LdLs~N~Lt~LP~---l~s~  403 (788)
T PRK15387        340 L---PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSL-----PALPS----GLKELIVSGNRLTSLPV---LPSE  403 (788)
T ss_pred             c---ccccceEecCCCccC-CCCCCCcccceehhhccccccC-----ccccc----ccceEEecCCcccCCCC---cccC
Confidence            1   247888999999988 56665555555544 5555542     21110    01111111  1111221   1246


Q ss_pred             HhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          236 VMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       236 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      |+.|++++|.+.+ +|...   .+|+.|++++|+|+
T Consensus       404 L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt  435 (788)
T PRK15387        404 LKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT  435 (788)
T ss_pred             CCEEEccCCcCCC-CCcch---hhhhhhhhccCccc
Confidence            7777777777754 55432   35667777777764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.62  E-value=1.3e-16  Score=134.51  Aligned_cols=114  Identities=30%  Similarity=0.230  Sum_probs=74.2

Q ss_pred             CCCcccEEECcCCCCCCC----cccc---CCCccEEEccCCcccc--ccchhhhhhccCCCcccEEEccCcccCCCCCcc
Q 043038            6 KFTQLLFRSLDSNNMSGL----LPLI---SSNLVYLGLSDNSFLG--SISHFLCDKINETKRLEALKLNDNYLQGELPDC   76 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~----~~~~---~~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~   76 (271)
                      .+..|+.++++++.+.+.    ++..   .++++.++++++.+..  .....+...+..+++|+.|++++|.+....+..
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            455688888888887542    2222   3468888888887752  112233344555788888888888886545555


Q ss_pred             ccCCCC---CCEEEccCCccccc----CCcccccC-CCccEEEccCCcccc
Q 043038           77 WMSDQN---LKILKLSNNKFIGN----LPNSFGSL-AFLVWLDLGKNRLFG  119 (271)
Q Consensus        77 ~~~l~~---L~~L~l~~n~~~~~----~~~~~~~l-~~L~~l~l~~n~l~~  119 (271)
                      +..+..   |++|++++|.+++.    +...+..+ ++|+.+++++|.+.+
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  151 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG  151 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence            554444   88888888887621    22234455 788888888888773

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.61  E-value=1.7e-16  Score=142.58  Aligned_cols=254  Identities=25%  Similarity=0.251  Sum_probs=155.3

Q ss_pred             CCCcccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038            6 KFTQLLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL   83 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L   83 (271)
                      +.-+|++||+++|.+...+-..  +.+|+.|+++.|.+.. .|....    ++.+|+++.+.+|.+. ..|..+..+.+|
T Consensus        43 ~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~-vp~s~~----~~~~l~~lnL~~n~l~-~lP~~~~~lknl  116 (1081)
T KOG0618|consen   43 KRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS-VPSSCS----NMRNLQYLNLKNNRLQ-SLPASISELKNL  116 (1081)
T ss_pred             heeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhh-Cchhhh----hhhcchhheeccchhh-cCchhHHhhhcc
Confidence            3445899999999887543222  4588999999998865 553333    4888999999999988 788888899999


Q ss_pred             CEEEccCCcccccCCcccccCCC-------------------ccEEEccCCccccccCccccCCCCccEEec--------
Q 043038           84 KILKLSNNKFIGNLPNSFGSLAF-------------------LVWLDLGKNRLFGTIPATLKNCTALESLDV--------  136 (271)
Q Consensus        84 ~~L~l~~n~~~~~~~~~~~~l~~-------------------L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l--------  136 (271)
                      ++|+++.|.+. ..|..+..++.                   .+.+++..|.+.+.++..+..++.  .+++        
T Consensus       117 ~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~  193 (1081)
T KOG0618|consen  117 QYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL  193 (1081)
T ss_pred             cccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh
Confidence            99999999886 44444333332                   333333334443334444433332  1222        


Q ss_pred             --------------------------------------------CCCCcccEEEeccCccCCCCchhhhcCccccEEecc
Q 043038          137 --------------------------------------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIA  172 (271)
Q Consensus       137 --------------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  172 (271)
                                                                  ....+|++++++.|+++ .+|++++.+.+|..+++.
T Consensus       194 dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n  272 (1081)
T KOG0618|consen  194 DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNAN  272 (1081)
T ss_pred             hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEeccc
Confidence                                                        22346888899999887 677999999999999999


Q ss_pred             CCccceecCcccccccCCcc----ccccccccc------------------cccccccchhhhh-hhhce--eccccchh
Q 043038          173 DNNLSGAIPNYINNVTGMVT----TNSFSRSAQ------------------QHLHVPLDVDVIL-MEKAS--VVSREEVV  227 (271)
Q Consensus       173 ~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~------------------~~~~~~~~~~~~~-~~~~~--~~~~~~~~  227 (271)
                      +|.++ .+|..+....+|+.    .|.+..+.+                  .++|..+...... +..+.  .......+
T Consensus       273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp  351 (1081)
T KOG0618|consen  273 HNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP  351 (1081)
T ss_pred             chhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence            99886 66665544444443    222221111                  0122211100000 00000  00111111


Q ss_pred             hHH-HHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038          228 EYN-EILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       228 ~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      ... ..++.|+.|.+.+|.+++.....+-++++|++|++++|++
T Consensus       352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL  395 (1081)
T KOG0618|consen  352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL  395 (1081)
T ss_pred             cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence            111 3456778888888888777777777888888888888865

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.60  E-value=5.7e-15  Score=135.46  Aligned_cols=220  Identities=21%  Similarity=0.294  Sum_probs=131.4

Q ss_pred             CcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038            8 TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK   87 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   87 (271)
                      .+...|+++++.+...+....++++.|++++|.++. +|..++      .+|++|++++|.++ .+|..+.  .+|+.|+
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~Lts-LP~~l~------~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIPEQITTLILDNNELKS-LPENLQ------GNIKTLYANSNQLT-SIPATLP--DTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccccCCcEEEecCCCCCc-CChhhc------cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence            356789999998885433334689999999999985 665442      58999999999998 6776553  5799999


Q ss_pred             ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCcccc
Q 043038           88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQ  167 (271)
Q Consensus        88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  167 (271)
                      +++|.+. .+|..+.  .+|+.|++++|.+. .+|..+.  ++|           +.|++++|.+++ +|..+.  ..|+
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL-----------~~L~Ls~N~Lt~-LP~~lp--~sL~  307 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EEL-----------RYLSVYDNSIRT-LPAHLP--SGIT  307 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCC-----------cEEECCCCcccc-Ccccch--hhHH
Confidence            9999998 6776664  58999999999998 5776543  234           455566666652 333222  2455


Q ss_pred             EEeccCCccceecCccc-ccccCCcc-ccccccccccccccccchhhhhhhhcee--ccccchhhHHHHHhhHhhhhhcC
Q 043038          168 ILDIADNNLSGAIPNYI-NNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASV--VSREEVVEYNEILNLVMVTIVSR  243 (271)
Q Consensus       168 ~L~l~~n~l~~~~~~~~-~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~L~~  243 (271)
                      .|++++|.++ .+|..+ .++..|.. .|.+.+.     |..+...   +..+.+  +....++.  ...++|+.|++++
T Consensus       308 ~L~Ls~N~Lt-~LP~~l~~sL~~L~Ls~N~Lt~L-----P~~l~~s---L~~L~Ls~N~L~~LP~--~lp~~L~~LdLs~  376 (754)
T PRK15370        308 HLNVQSNSLT-ALPETLPPGLKTLEAGENALTSL-----PASLPPE---LQVLDVSKNQITVLPE--TLPPTITTLDVSR  376 (754)
T ss_pred             HHHhcCCccc-cCCccccccceeccccCCccccC-----ChhhcCc---ccEEECCCCCCCcCCh--hhcCCcCEEECCC
Confidence            5666666655 333222 22222222 3333321     1110000   000000  00111111  1234677778887


Q ss_pred             CcccccccHhhhccCCCCEEEccCCCCC
Q 043038          244 NDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       244 n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      |.+.. +|..+..  .|+.|++++|+|+
T Consensus       377 N~Lt~-LP~~l~~--sL~~LdLs~N~L~  401 (754)
T PRK15370        377 NALTN-LPENLPA--ALQIMQASRNNLV  401 (754)
T ss_pred             CcCCC-CCHhHHH--HHHHHhhccCCcc
Confidence            77763 6665542  5777777777763

>PLN03210 Resistant to P

Probab=99.60  E-value=9.7e-15  Score=141.55  Aligned_cols=170  Identities=19%  Similarity=0.260  Sum_probs=123.9

Q ss_pred             CccCCCcccEEECcCCCCC------CCccccC----CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCC
Q 043038            3 NLTKFTQLLFRSLDSNNMS------GLLPLIS----SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE   72 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~------~~~~~~~----~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~   72 (271)
                      +|.+|++|+.|.+.++...      ..+|..+    .+|+.|.+.++.++. +|..+.     ..+|+.|++++|.+. .
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~-lP~~f~-----~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC-MPSNFR-----PENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCC-CCCcCC-----ccCCcEEECcCcccc-c
Confidence            4778999999998765422      2334332    378999999988765 555442     678999999999988 6


Q ss_pred             CCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCC------------CC
Q 043038           73 LPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER------------FS  140 (271)
Q Consensus        73 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~------------~~  140 (271)
                      ++..+..+++|+.++++++.....+| .+..+++|+.|++++|.....+|..+..+++|+.|++..            ++
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~  704 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLK  704 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCC
Confidence            77888889999999999876443565 477889999999999876557888888888888888733            34


Q ss_pred             cccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCccc
Q 043038          141 RMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYI  184 (271)
Q Consensus       141 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  184 (271)
                      +|+.|++++|...+.+|..   ..+|+.|++++|.+. .+|..+
T Consensus       705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~  744 (1153)
T PLN03210        705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL  744 (1153)
T ss_pred             CCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc
Confidence            6777777777544444432   346778888888776 556543

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.60  E-value=1.4e-16  Score=134.28  Aligned_cols=148  Identities=26%  Similarity=0.227  Sum_probs=67.4

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCC------CCCccccCCCCCCEEEccCCcccccCCccccc
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG------ELPDCWMSDQNLKILKLSNNKFIGNLPNSFGS  103 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  103 (271)
                      +++.++++++.++......++..+...+.++.++++++.+..      ..+..+..+++|+.|++++|.+....+..+..
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  103 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES  103 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence            455556655555432222333333344555555555555431      11233444555566666555554333333333


Q ss_pred             CCC---ccEEEccCCccccc----cCccccCC-CCccEEec-----------------CCCCcccEEEeccCccCCC---
Q 043038          104 LAF---LVWLDLGKNRLFGT----IPATLKNC-TALESLDV-----------------ERFSRMVVLNLRSNKFHGP---  155 (271)
Q Consensus       104 l~~---L~~l~l~~n~l~~~----~~~~~~~l-~~L~~L~l-----------------~~~~~L~~L~l~~n~l~~~---  155 (271)
                      +.+   |+.+++++|.+.+.    +...+..+ ++|+.+++                 ..+++|+.|++++|.+++.   
T Consensus       104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  183 (319)
T cd00116         104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR  183 (319)
T ss_pred             HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence            333   55566655554421    11223333 45555554                 1223455555555555421   


Q ss_pred             -CchhhhcCccccEEeccCCccc
Q 043038          156 -LPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       156 -~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                       ++..+...+.|+.|++++|.++
T Consensus       184 ~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         184 ALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHHHHHhCCCCCEEeccCCccC
Confidence             1122333345555555555553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.44  E-value=2.5e-15  Score=123.73  Aligned_cols=123  Identities=23%  Similarity=0.316  Sum_probs=90.6

Q ss_pred             ccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccC-
Q 043038           36 LSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGK-  114 (271)
Q Consensus        36 l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~-  114 (271)
                      =++-.++ ++|..+|      +.-.+++|..|+|+...+.+|+.+++|+.||++.|.|+.+.|+.|.++.++.++.+.+ 
T Consensus        53 Cr~~GL~-eVP~~LP------~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   53 CRGKGLT-EVPANLP------PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             ccCCCcc-cCcccCC------CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence            3344444 3777766      3678899999999977788999999999999999999988899999999999998877 


Q ss_pred             CccccccC-ccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038          115 NRLFGTIP-ATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       115 n~l~~~~~-~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                      |+++ .+| ..+.++.+++.|.           +.-|++.....+.|..+++++.|.+.+|.+.
T Consensus       126 NkI~-~l~k~~F~gL~slqrLl-----------lNan~i~Cir~~al~dL~~l~lLslyDn~~q  177 (498)
T KOG4237|consen  126 NKIT-DLPKGAFGGLSSLQRLL-----------LNANHINCIRQDALRDLPSLSLLSLYDNKIQ  177 (498)
T ss_pred             Cchh-hhhhhHhhhHHHHHHHh-----------cChhhhcchhHHHHHHhhhcchhcccchhhh
Confidence            8898 455 4667777776555           4444555444555555555555555555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.35  E-value=2.7e-14  Score=122.63  Aligned_cols=173  Identities=24%  Similarity=0.436  Sum_probs=124.1

Q ss_pred             CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCcc
Q 043038           29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLV  108 (271)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  108 (271)
                      ......+++.|.+. ++|..++.    +..|+.+.+..|.+. .+|.+++.+..|+++|++.|++. ..|..++.++ |+
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~----f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lk  146 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACA----FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LK  146 (722)
T ss_pred             cchhhhhccccccc-cCchHHHH----HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ce
Confidence            34556777777775 36666665    667777788888877 77777888888888888888887 6776777666 77


Q ss_pred             EEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCccccccc
Q 043038          109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT  188 (271)
Q Consensus       109 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  188 (271)
                      -+.+++|+++ .+|+.++....           |..||.+.|.+. .+|.-++.+..|+.+++..|.+. .+|..+..++
T Consensus       147 vli~sNNkl~-~lp~~ig~~~t-----------l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp  212 (722)
T KOG0532|consen  147 VLIVSNNKLT-SLPEEIGLLPT-----------LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP  212 (722)
T ss_pred             eEEEecCccc-cCCcccccchh-----------HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc
Confidence            7778888877 67777764443           334557777775 56666777777777777777776 5555444322


Q ss_pred             CCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCC
Q 043038          189 GMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN  268 (271)
Q Consensus       189 ~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  268 (271)
                                                                     |..||+++|++. .+|..|++|+.|++|-|.+|
T Consensus       213 -----------------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  213 -----------------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             -----------------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccC
Confidence                                                           566888888885 58888888888888888888


Q ss_pred             CCC
Q 043038          269 TFT  271 (271)
Q Consensus       269 ~i~  271 (271)
                      .++
T Consensus       245 PLq  247 (722)
T KOG0532|consen  245 PLQ  247 (722)
T ss_pred             CCC
Confidence            653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.34  E-value=9e-14  Score=112.92  Aligned_cols=175  Identities=23%  Similarity=0.209  Sum_probs=97.6

Q ss_pred             CccCCCcccEEECcCCCCCCCcccc-------CCCccEEEccCCcc---ccccchh---hhhhccCCCcccEEEccCccc
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLI-------SSNLVYLGLSDNSF---LGSISHF---LCDKINETKRLEALKLNDNYL   69 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~-------~~~L~~L~l~~n~~---~~~~~~~---~~~~~~~~~~L~~L~l~~n~l   69 (271)
                      .+..+..++.+++++|.+.......       .+.|+..++++-.-   ...+|..   +..++..+++|++++||.|.+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            3456777888899988876332211       23566666664322   2223332   334455566777778887777


Q ss_pred             CCCCCcc----ccCCCCCCEEEccCCccccc-------------CCcccccCCCccEEEccCCcccccc----CccccCC
Q 043038           70 QGELPDC----WMSDQNLKILKLSNNKFIGN-------------LPNSFGSLAFLVWLDLGKNRLFGTI----PATLKNC  128 (271)
Q Consensus        70 ~~~~~~~----~~~l~~L~~L~l~~n~~~~~-------------~~~~~~~l~~L~~l~l~~n~l~~~~----~~~~~~l  128 (271)
                      ....+..    ++.+..|++|++.+|.+...             ........+.|+.+..++|++.+..    ...+...
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH  184 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence            6433333    34466777777777776511             1112234466777777777765321    1223333


Q ss_pred             CCccEEec-----------------CCCCcccEEEeccCccCCC----CchhhhcCccccEEeccCCccc
Q 043038          129 TALESLDV-----------------ERFSRMVVLNLRSNKFHGP----LPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       129 ~~L~~L~l-----------------~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                      +.+..+.+                 .++++|+.||+.+|.++..    +...++.|+.|+.+++++|.+.
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence            44443333                 4556666666777666532    2344556666777777766664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=7e-11  Score=89.75  Aligned_cols=125  Identities=26%  Similarity=0.303  Sum_probs=43.2

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCccc-ccCCCcc
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSF-GSLAFLV  108 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~  108 (271)
                      .++.|++++|.++. +. .+.   ..+.+|+.|++++|.|+ .+. .+..++.|+.|++++|+++ .+...+ ..+++|+
T Consensus        20 ~~~~L~L~~n~I~~-Ie-~L~---~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   20 KLRELNLRGNQIST-IE-NLG---ATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQ   91 (175)
T ss_dssp             ------------------S-----TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred             cccccccccccccc-cc-chh---hhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCC
Confidence            56778888888764 21 111   12567888888888887 443 4667788888888888887 443334 3578888


Q ss_pred             EEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCC---chhhhcCccccEEecc
Q 043038          109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPL---PTRFCDLAILQILDIA  172 (271)
Q Consensus       109 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~  172 (271)
                      .|++++|.+.. +. .+..+        ..+++|+.|++.+|.++...   ...+..+|+|+.||-.
T Consensus        92 ~L~L~~N~I~~-l~-~l~~L--------~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   92 ELYLSNNKISD-LN-ELEPL--------SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             EEE-TTS---S-CC-CCGGG--------GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             EEECcCCcCCC-hH-HhHHH--------HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            88888888762 21 12211        23456667778888876321   2346677888887753

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=1.1e-10  Score=101.37  Aligned_cols=192  Identities=29%  Similarity=0.376  Sum_probs=123.7

Q ss_pred             EEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC-CCCEEEccCCcccccCCcccccCCCccEEE
Q 043038           33 YLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ-NLKILKLSNNKFIGNLPNSFGSLAFLVWLD  111 (271)
Q Consensus        33 ~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~  111 (271)
                      .+....+.+...+....     ..+.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|+
T Consensus        97 ~l~~~~~~~~~~~~~~~-----~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~  169 (394)
T COG4886          97 SLDLNLNRLRSNISELL-----ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLD  169 (394)
T ss_pred             eeeccccccccCchhhh-----cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccc
Confidence            46666666533222222     2567888888888887 6666655563 7888888888887 5555677788888888


Q ss_pred             ccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCc
Q 043038          112 LGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMV  191 (271)
Q Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~  191 (271)
                      ++.|.+. .+|...+..           ++|+.|++++|+++ .+|........|+++.+++|.+. ..+..+.++..+.
T Consensus       170 l~~N~l~-~l~~~~~~~-----------~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~  235 (394)
T COG4886         170 LSFNDLS-DLPKLLSNL-----------SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLS  235 (394)
T ss_pred             cCCchhh-hhhhhhhhh-----------hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccccc
Confidence            8888887 555544333           34556668888887 56655555666888888888543 4455555554443


Q ss_pred             cccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038          192 TTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       192 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      ... +...                      .....+...+.+++++.|++++|.+.. ++. +....+++.+++++|.+
T Consensus       236 ~l~-l~~n----------------------~~~~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         236 GLE-LSNN----------------------KLEDLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             ccc-cCCc----------------------eeeeccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccc
Confidence            311 0000                      000112333567778999999999865 444 88899999999998865

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.09  E-value=2.7e-12  Score=110.59  Aligned_cols=163  Identities=34%  Similarity=0.491  Sum_probs=98.9

Q ss_pred             ccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEE
Q 043038           10 LLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKIL   86 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   86 (271)
                      -...|++.|++... |..   |..|+.+.+..|.+.. +|..++.    +..|..++++.|+++ ..|..++.++ |+.|
T Consensus        77 t~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~~r~-ip~~i~~----L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   77 TVFADLSRNRFSEL-PEEACAFVSLESLILYHNCIRT-IPEAICN----LEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             hhhhhccccccccC-chHHHHHHHHHHHHHHhcccee-cchhhhh----hhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            34567777877643 332   2355555555555543 4444443    555556666666655 4455444433 4555


Q ss_pred             EccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-----CC------CCcccEEEeccCccCCC
Q 043038           87 KLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-----ER------FSRMVVLNLRSNKFHGP  155 (271)
Q Consensus        87 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-----~~------~~~L~~L~l~~n~l~~~  155 (271)
                      -+++|+++ .+|..++..+.|.+++++.|.+. .+|..++.+.+|+.|.+     .+      .-.|..||++.|++. .
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis-~  225 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKIS-Y  225 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCcee-e
Confidence            56666655 45555555555556666666555 45555555555544433     00      113678889999998 7


Q ss_pred             CchhhhcCccccEEeccCCccceecCccc
Q 043038          156 LPTRFCDLAILQILDIADNNLSGAIPNYI  184 (271)
Q Consensus       156 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  184 (271)
                      +|-.|.+++.|++|-|.+|.+. ..|..+
T Consensus       226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqI  253 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQI  253 (722)
T ss_pred             cchhhhhhhhheeeeeccCCCC-CChHHH
Confidence            8999999999999999999997 555544

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=1.8e-10  Score=100.10  Aligned_cols=167  Identities=33%  Similarity=0.472  Sum_probs=113.2

Q ss_pred             cCCCcccEEECcCCCCCCCcccc--CC-CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038            5 TKFTQLLFRSLDSNNMSGLLPLI--SS-NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ   81 (271)
Q Consensus         5 ~~~~~L~~L~l~~n~~~~~~~~~--~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   81 (271)
                      ..++.++.+++.+|.+....+..  .. +|+.|++++|.+.. +|    ..+..++.|+.|++++|++. .+|......+
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~----~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~  186 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LP----SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLS  186 (394)
T ss_pred             hcccceeEEecCCcccccCccccccchhhcccccccccchhh-hh----hhhhccccccccccCCchhh-hhhhhhhhhh
Confidence            34566788888888887655433  32 78888888888765 33    23334788888888888887 6666555778


Q ss_pred             CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------------CCCCcccEEEecc
Q 043038           82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------------ERFSRMVVLNLRS  149 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------------~~~~~L~~L~l~~  149 (271)
                      .|+.|++++|++. .+|........|+.+.+++|... ..+..+..++.+..+.+            +.++++++|++++
T Consensus       187 ~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~  264 (394)
T COG4886         187 NLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN  264 (394)
T ss_pred             hhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccc
Confidence            8888888888887 56655445556888888888544 34455555555444432            4455677888888


Q ss_pred             CccCCCCchhhhcCccccEEeccCCccceecC
Q 043038          150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIP  181 (271)
Q Consensus       150 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  181 (271)
                      |.++. ++. ++....++.+++++|.+....+
T Consensus       265 n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         265 NQISS-ISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             ccccc-ccc-ccccCccCEEeccCccccccch
Confidence            88874 333 6777788888888877764433

>PLN03150 hypothetical protein; Provisional

Probab=99.04  E-value=7.5e-10  Score=101.15  Aligned_cols=109  Identities=31%  Similarity=0.467  Sum_probs=79.9

Q ss_pred             cccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecC
Q 043038           58 RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVE  137 (271)
Q Consensus        58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~  137 (271)
                      .++.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.++.+++|+     
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~-----  493 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR-----  493 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC-----
Confidence            367778888888777777788888888888888888777777777888888888888888777777776655444     


Q ss_pred             CCCcccEEEeccCccCCCCchhhhcC-ccccEEeccCCccc
Q 043038          138 RFSRMVVLNLRSNKFHGPLPTRFCDL-AILQILDIADNNLS  177 (271)
Q Consensus       138 ~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~  177 (271)
                            .|++++|.+++.+|..+... ..+..+++.+|...
T Consensus       494 ------~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        494 ------ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             ------EEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence                  44577788877777776653 35567777777543

>PLN03150 hypothetical protein; Provisional

Probab=99.02  E-value=9.2e-10  Score=100.56  Aligned_cols=94  Identities=35%  Similarity=0.588  Sum_probs=78.6

Q ss_pred             CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhh
Q 043038           82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFC  161 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~  161 (271)
                      .++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+           .|++++|.+++.+|..++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~-----------~LdLs~N~lsg~iP~~l~  487 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE-----------VLDLSYNSFNGSIPESLG  487 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC-----------EEECCCCCCCCCCchHHh
Confidence            377889999998888888888899999999999998888887777666544           555888999888898899


Q ss_pred             cCccccEEeccCCccceecCccccc
Q 043038          162 DLAILQILDIADNNLSGAIPNYINN  186 (271)
Q Consensus       162 ~l~~L~~L~l~~n~l~~~~~~~~~~  186 (271)
                      .+++|+.|++++|.++|.+|..+..
T Consensus       488 ~L~~L~~L~Ls~N~l~g~iP~~l~~  512 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGRVPAALGG  512 (623)
T ss_pred             cCCCCCEEECcCCcccccCChHHhh
Confidence            9999999999999998888877654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=5.2e-10  Score=85.01  Aligned_cols=106  Identities=27%  Similarity=0.363  Sum_probs=30.5

Q ss_pred             CCcccEEEccCcccCCCCCcccc-CCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCcccc-CCCCccE
Q 043038           56 TKRLEALKLNDNYLQGELPDCWM-SDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLK-NCTALES  133 (271)
Q Consensus        56 ~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~-~l~~L~~  133 (271)
                      ...+++|++++|.|+ .+. .+. .+.+|+.|++++|.++ .++ .+..++.|+.|++++|.++ .+.+.+. .++    
T Consensus        18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp----   88 (175)
T PF14580_consen   18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP----   88 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T----
T ss_pred             ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCC----
Confidence            445677777777776 332 233 4567777777777776 333 3556677777777777776 3333332 233    


Q ss_pred             EecCCCCcccEEEeccCccCCCC-chhhhcCccccEEeccCCccc
Q 043038          134 LDVERFSRMVVLNLRSNKFHGPL-PTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       134 L~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~  177 (271)
                             +|+.|++++|++...- -..+..++.|+.|++.+|.++
T Consensus        89 -------~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   89 -------NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -------T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             -------cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence                   3445557777765321 134556677777777777665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=1.1e-10  Score=93.83  Aligned_cols=39  Identities=18%  Similarity=0.208  Sum_probs=21.4

Q ss_pred             HHhhHhhhhhcCCcccc-cccHhhhccCCCCEEEccCCCC
Q 043038          232 ILNLVMVTIVSRNDLLK-NVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       232 ~~~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      .+.+|+.||+++|++.. +-...++.+|.|+++.+.+|.+
T Consensus       372 KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  372 KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            34556666666666532 1233455666666666666544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.91  E-value=1.4e-09  Score=68.15  Aligned_cols=59  Identities=39%  Similarity=0.568  Sum_probs=34.2

Q ss_pred             cccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCc
Q 043038           58 RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR  116 (271)
Q Consensus        58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~  116 (271)
                      +|++|++++|+++...+..|.++++|++|++++|.++...+..|..+++|+.+++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45566666666653333455566666666666666654445555666666666666654

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.8e-10  Score=96.60  Aligned_cols=197  Identities=22%  Similarity=0.186  Sum_probs=100.3

Q ss_pred             CCcccEEEccCcccCCCCC--ccccCCCCCCEEEccCCccccc--CCcccccCCCccEEEccCCccccccCccc-cCCCC
Q 043038           56 TKRLEALKLNDNYLQGELP--DCWMSDQNLKILKLSNNKFIGN--LPNSFGSLAFLVWLDLGKNRLFGTIPATL-KNCTA  130 (271)
Q Consensus        56 ~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~l~l~~n~l~~~~~~~~-~~l~~  130 (271)
                      +.+|++..+.++.+. ..+  .....++.++.||++.|-+..-  +..-...+|+|+.|+++.|++........ ..+++
T Consensus       120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            444555555555544 222  1334455555555555544311  11122245555555555555442111111 11233


Q ss_pred             ccEEec--------------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecC--cccccccCCcc-c
Q 043038          131 LESLDV--------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIP--NYINNVTGMVT-T  193 (271)
Q Consensus       131 L~~L~l--------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~-~  193 (271)
                      ++.|.+              ..+|+|+.|++++|..-..-.....-+..|+.|++++|.+. ..+  ...+.++.|.. .
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhh
Confidence            333333              44677888888888421122223334567888899888876 333  34456666666 3


Q ss_pred             cccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCccccc-ccHhhhccCCCCEEEccCCCCC
Q 043038          194 NSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKN-VPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       194 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      ....+++...+|..                 ...+-...+++|++|++..|.+.+. -...+..+++|+.+.+.+|.|+
T Consensus       278 ls~tgi~si~~~d~-----------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  278 LSSTGIASIAEPDV-----------------ESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccccCcchhcCCCc-----------------cchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            33444433333311                 0011113577888899998888431 2234566777777777776653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=1.9e-10  Score=92.37  Aligned_cols=127  Identities=24%  Similarity=0.305  Sum_probs=83.1

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW  109 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  109 (271)
                      .|+.+++++|.++. +.+.+    .-.|.++.|++|+|.+. .+.. +..+++|+.||+++|.++ .+.+|-.++.+.++
T Consensus       285 ~LtelDLS~N~I~~-iDESv----KL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  285 ELTELDLSGNLITQ-IDESV----KLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT  356 (490)
T ss_pred             hhhhccccccchhh-hhhhh----hhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence            56777777777654 33222    22567777777777776 3323 566777777777777776 55566666777777


Q ss_pred             EEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCC-CchhhhcCccccEEeccCCccc
Q 043038          110 LDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGP-LPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       110 l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                      |.++.|.+. .+ .++.+           +.+|..||+.+|+|... --..+++++.|+++.+.+|.+.
T Consensus       357 L~La~N~iE-~L-SGL~K-----------LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  357 LKLAQNKIE-TL-SGLRK-----------LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             eehhhhhHh-hh-hhhHh-----------hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            777777665 21 23333           33566777888988631 1235778889999999999887

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.89  E-value=4.5e-10  Score=91.71  Aligned_cols=174  Identities=24%  Similarity=0.264  Sum_probs=117.2

Q ss_pred             ccCCCcccEEECcCCCCC---CCcccc----------CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccC
Q 043038            4 LTKFTQLLFRSLDSNNMS---GLLPLI----------SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ   70 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~---~~~~~~----------~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~   70 (271)
                      +.+.+.|+..+++.-...   ..+|..          .+.|+++++++|.+....++.+...+.++..|+.|.+.+|.+.
T Consensus        54 L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   54 LASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             HhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            445566777777654332   223333          1378888888888877777777777777888888888888776


Q ss_pred             CCCCcc-------------ccCCCCCCEEEccCCcccccC----CcccccCCCccEEEccCCccccc----cCccccCCC
Q 043038           71 GELPDC-------------WMSDQNLKILKLSNNKFIGNL----PNSFGSLAFLVWLDLGKNRLFGT----IPATLKNCT  129 (271)
Q Consensus        71 ~~~~~~-------------~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~l~l~~n~l~~~----~~~~~~~l~  129 (271)
                      ..-...             ....+.|+++...+|++....    ...|...+.|+.+.++.|.+...    +...+..++
T Consensus       134 ~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~  213 (382)
T KOG1909|consen  134 PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP  213 (382)
T ss_pred             hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC
Confidence            211111             233467888888888876321    22355567788888888876521    223456678


Q ss_pred             CccEEec-----------------CCCCcccEEEeccCccCCCCchhhh-----cCccccEEeccCCccc
Q 043038          130 ALESLDV-----------------ERFSRMVVLNLRSNKFHGPLPTRFC-----DLAILQILDIADNNLS  177 (271)
Q Consensus       130 ~L~~L~l-----------------~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~  177 (271)
                      +|+.||+                 ..+++|+.+++++|.+...-...|.     ..+.|+.+.+.+|.++
T Consensus       214 ~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  214 HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             cceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            8888887                 6678899999999999754443332     3578999999999987

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=7.1e-10  Score=93.04  Aligned_cols=168  Identities=24%  Similarity=0.210  Sum_probs=77.9

Q ss_pred             CCCcccEEECcCCCCCCCccc-----cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCC-CCCccccC
Q 043038            6 KFTQLLFRSLDSNNMSGLLPL-----ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG-ELPDCWMS   79 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~   79 (271)
                      .+++++.||+++|-+...-+.     -+++|+.|+++.|.+.--.......   .++.++.|.++.|.++- .+......
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhhhheEEeccCCCCHHHHHHHHHh
Confidence            456666666666655432221     1456666666666553211111111   14455555555555541 11222334


Q ss_pred             CCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccC--ccccCCCCccEEec-------------------CC
Q 043038           80 DQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIP--ATLKNCTALESLDV-------------------ER  138 (271)
Q Consensus        80 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~--~~~~~l~~L~~L~l-------------------~~  138 (271)
                      +++|+.|++..|...........-++.|+.|++++|.+. ..+  ...+.++.|..|++                   ..
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT  299 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence            555566666555311111112223445666666666554 222  22233333333322                   33


Q ss_pred             CCcccEEEeccCccCCCC-chhhhcCccccEEeccCCccc
Q 043038          139 FSRMVVLNLRSNKFHGPL-PTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       139 ~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~  177 (271)
                      +++|++|++..|++.+.. -..+..+++|+.+.+..|.++
T Consensus       300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            456777777777765321 122344556666666666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=6.8e-09  Score=65.02  Aligned_cols=61  Identities=38%  Similarity=0.516  Sum_probs=48.1

Q ss_pred             CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcc
Q 043038           29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKF   93 (271)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   93 (271)
                      ++|++|++++|.++. +|.   ..|..+++|++|++++|.++...+.+|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~-i~~---~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE-IPP---DSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESE-ECT---TTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCc-cCH---HHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            467888888888875 332   2333588999999999999866777899999999999999875

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.67  E-value=3.7e-08  Score=92.55  Aligned_cols=129  Identities=26%  Similarity=0.321  Sum_probs=93.7

Q ss_pred             CccCCCcccEEECcCCCCCCCcc-ccCCCccEEEccCCc--cccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLP-LISSNLVYLGLSDNS--FLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS   79 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   79 (271)
                      ........+++.+-+|.+....- ...+.|++|-+.+|.  +.. ++..+   |..++.|++||+++|.-.+.+|..++.
T Consensus       518 ~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~-is~~f---f~~m~~LrVLDLs~~~~l~~LP~~I~~  593 (889)
T KOG4658|consen  518 QVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE-ISGEF---FRSLPLLRVLDLSGNSSLSKLPSSIGE  593 (889)
T ss_pred             cccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh-cCHHH---HhhCcceEEEECCCCCccCcCChHHhh
Confidence            34445566777777666653221 123478888888886  332 33322   335899999999988655589999999


Q ss_pred             CCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec
Q 043038           80 DQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV  136 (271)
Q Consensus        80 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l  136 (271)
                      +-+|++|++++..+. .+|..+.++..|.+|++..+.....+|.....+.+|+.|.+
T Consensus       594 Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  594 LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL  649 (889)
T ss_pred             hhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence            999999999999998 88889999999999999888765455555555888888876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.62  E-value=4.8e-08  Score=77.69  Aligned_cols=172  Identities=24%  Similarity=0.248  Sum_probs=113.2

Q ss_pred             CCCcccEEECcCCCCCCCccccC-------CCccEEEccCCcccc---ccch---hhhhhccCCCcccEEEccCcccCCC
Q 043038            6 KFTQLLFRSLDSNNMSGLLPLIS-------SNLVYLGLSDNSFLG---SISH---FLCDKINETKRLEALKLNDNYLQGE   72 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~~~-------~~L~~L~l~~n~~~~---~~~~---~~~~~~~~~~~L~~L~l~~n~l~~~   72 (271)
                      .+..+..+|+|+|.|......++       .+|+..+++.-....   .+++   .+..++.+|+.|+..++|.|.+...
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            46778889999999875543332       367777777654332   2232   2334556789999999999988755


Q ss_pred             CCcc----ccCCCCCCEEEccCCcccccCCc-------------ccccCCCccEEEccCCccccccCcc-----ccCCCC
Q 043038           73 LPDC----WMSDQNLKILKLSNNKFIGNLPN-------------SFGSLAFLVWLDLGKNRLFGTIPAT-----LKNCTA  130 (271)
Q Consensus        73 ~~~~----~~~l~~L~~L~l~~n~~~~~~~~-------------~~~~l~~L~~l~l~~n~l~~~~~~~-----~~~l~~  130 (271)
                      .|..    ++....|.+|.+++|.+...--+             ....-|.|+.....+|++.. .|..     +..-..
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~  186 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHEN  186 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcC
Confidence            5543    45567899999999987521111             12345788888888888762 2221     111123


Q ss_pred             ccEEec------------------CCCCcccEEEeccCccCCC----CchhhhcCccccEEeccCCccce
Q 043038          131 LESLDV------------------ERFSRMVVLNLRSNKFHGP----LPTRFCDLAILQILDIADNNLSG  178 (271)
Q Consensus       131 L~~L~l------------------~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~  178 (271)
                      ++.+.+                  .++.+|+.||+++|.++..    +...++.|+.|+.|.+.+|-++.
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            444433                  5567899999999998742    34567788899999999998763

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.52  E-value=2.6e-08  Score=87.08  Aligned_cols=106  Identities=28%  Similarity=0.280  Sum_probs=62.6

Q ss_pred             ccCCCcccEEECcCCCCCCCcc--ccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLP--LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ   81 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~--~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   81 (271)
                      +..++.++.+++.+|.+.....  ..+++|++|++++|.++...+  +    ..++.|+.|++++|.|+ .+ ..+..+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l----~~l~~L~~L~l~~N~i~-~~-~~~~~l~  162 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--L----STLTLLKELNLSGNLIS-DI-SGLESLK  162 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--h----hhccchhhheeccCcch-hc-cCCccch
Confidence            4566667777777777665544  335677777777777665222  1    12555777777777765 22 2334466


Q ss_pred             CCCEEEccCCcccccCCcc-cccCCCccEEEccCCccc
Q 043038           82 NLKILKLSNNKFIGNLPNS-FGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~-~~~l~~L~~l~l~~n~l~  118 (271)
                      .|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.
T Consensus       163 ~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  163 SLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR  199 (414)
T ss_pred             hhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence            67777777777662222 1 245566666666666654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.48  E-value=4.6e-08  Score=85.48  Aligned_cols=189  Identities=26%  Similarity=0.351  Sum_probs=98.0

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW  109 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  109 (271)
                      .++.+.++.|.++.     ....+..+.+++.+++.+|.|. .+...+..+.+|++|++++|.|+...  .+..++.|+.
T Consensus        73 ~l~~l~l~~n~i~~-----~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   73 SLKELNLRQNLIAK-----ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             hHHhhccchhhhhh-----hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhh
Confidence            44445555555543     1122233666677777777666 34333455666777777777766222  2444555666


Q ss_pred             EEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchh-hhcCccccEEeccCCccceecCccccccc
Q 043038          110 LDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTR-FCDLAILQILDIADNNLSGAIPNYINNVT  188 (271)
Q Consensus       110 l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  188 (271)
                      |++.+|.+. .+. .+..           ++.|+.+++++|.++. +... ...+..++.+.+.+|.+. .+ ..+..+.
T Consensus       145 L~l~~N~i~-~~~-~~~~-----------l~~L~~l~l~~n~i~~-ie~~~~~~~~~l~~l~l~~n~i~-~i-~~~~~~~  208 (414)
T KOG0531|consen  145 LNLSGNLIS-DIS-GLES-----------LKSLKLLDLSYNRIVD-IENDELSELISLEELDLGGNSIR-EI-EGLDLLK  208 (414)
T ss_pred             heeccCcch-hcc-CCcc-----------chhhhcccCCcchhhh-hhhhhhhhccchHHHhccCCchh-cc-cchHHHH
Confidence            777777665 221 1222           2234455566666652 2221 355666666777766664 11 1111111


Q ss_pred             CCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHh--hHhhhhhcCCcccccccHhhhccCCCCE
Q 043038          189 GMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILN--LVMVTIVSRNDLLKNVPLEVRNLKATQS  262 (271)
Q Consensus       189 ~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l~~l~~L~~  262 (271)
                      .+..    .|.+..+..                        .    ....  .|+.+++.+|++.. ++..+..+..+..
T Consensus       209 ~l~~~~l~~n~i~~~~~------------------------l----~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~  259 (414)
T KOG0531|consen  209 KLVLLSLLDNKISKLEG------------------------L----NELVMLHLRELYLSGNRISR-SPEGLENLKNLPV  259 (414)
T ss_pred             HHHHhhcccccceeccC------------------------c----ccchhHHHHHHhcccCcccc-ccccccccccccc
Confidence            1111    122211100                        0    0112  37888888888754 4467778888888


Q ss_pred             EEccCCCCC
Q 043038          263 LNFSHNTFT  271 (271)
Q Consensus       263 L~l~~n~i~  271 (271)
                      +++..|+++
T Consensus       260 l~~~~n~~~  268 (414)
T KOG0531|consen  260 LDLSSNRIS  268 (414)
T ss_pred             cchhhcccc
Confidence            888877653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.41  E-value=4e-08  Score=87.71  Aligned_cols=103  Identities=30%  Similarity=0.367  Sum_probs=72.3

Q ss_pred             CcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCc-cccCCCCccEEe
Q 043038           57 KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA-TLKNCTALESLD  135 (271)
Q Consensus        57 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~l~~L~~L~  135 (271)
                      -.|.+.++++|.+. .+..++.-++.+++|++++|+++.. . .+.+++.|++||++.|.+. .+|. ....+       
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-------  232 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-------  232 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhh-------
Confidence            34667778888887 6667777778888888888888733 2 5677888888888888877 4443 11122       


Q ss_pred             cCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038          136 VERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       136 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                           +|+.|.+.+|.++..  ..+.++++|+.||+++|-+.
T Consensus       233 -----~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  233 -----KLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             -----hheeeeecccHHHhh--hhHHhhhhhhccchhHhhhh
Confidence                 255666888887632  24567888888888888776

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.31  E-value=2.7e-08  Score=88.73  Aligned_cols=152  Identities=24%  Similarity=0.209  Sum_probs=98.8

Q ss_pred             ccCCCcccEEECcCCCCCCC---cc------c-----------------------c--CCCccEEEccCCccccccchhh
Q 043038            4 LTKFTQLLFRSLDSNNMSGL---LP------L-----------------------I--SSNLVYLGLSDNSFLGSISHFL   49 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~---~~------~-----------------------~--~~~L~~L~l~~n~~~~~~~~~~   49 (271)
                      |-.|+.|++|.+.+|.+...   .+      .                       +  +-.|.+.++++|.+..     +
T Consensus       105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~-----m  179 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVL-----M  179 (1096)
T ss_pred             eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHh-----H
Confidence            45788999999999988632   11      0                       0  1156777788888753     2


Q ss_pred             hhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCC
Q 043038           50 CDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCT  129 (271)
Q Consensus        50 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~  129 (271)
                      -..++-++.++.|+|++|+++ ... .+..++.|++||+++|.+. .+|.--..-..|+.|++.+|.++ .+ .++.+++
T Consensus       180 D~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~Lk  254 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLK  254 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhh
Confidence            222333778999999999998 443 7889999999999999998 55532111234889999999987 32 4566666


Q ss_pred             CccEEecCCCCcccEEEeccCccCCCC-chhhhcCccccEEeccCCcc
Q 043038          130 ALESLDVERFSRMVVLNLRSNKFHGPL-PTRFCDLAILQILDIADNNL  176 (271)
Q Consensus       130 ~L~~L~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l  176 (271)
                      +|+.||           +++|-+.+.- -..+..+..|+.|.+.+|.+
T Consensus       255 sL~~LD-----------lsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  255 SLYGLD-----------LSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhccc-----------hhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            666555           5555554211 01123344555556665554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=2.1e-08  Score=80.66  Aligned_cols=86  Identities=27%  Similarity=0.241  Sum_probs=45.1

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCc-cccc-CCcccccCCCc
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNK-FIGN-LPNSFGSLAFL  107 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L  107 (271)
                      .++++|++...++.   +.+...+..+.+|+.|.+.++.+...+...++.-..|..|+++.+. ++.. ..--+..++.|
T Consensus       186 Rlq~lDLS~s~it~---stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITV---STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeH---HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            46666666655542   2222223335666666666666665555555556666666666543 3310 01123345566


Q ss_pred             cEEEccCCccc
Q 043038          108 VWLDLGKNRLF  118 (271)
Q Consensus       108 ~~l~l~~n~l~  118 (271)
                      ++|++++|.+.
T Consensus       263 ~~LNlsWc~l~  273 (419)
T KOG2120|consen  263 DELNLSWCFLF  273 (419)
T ss_pred             hhcCchHhhcc
Confidence            66666666544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.21  E-value=6.4e-07  Score=51.71  Aligned_cols=37  Identities=27%  Similarity=0.398  Sum_probs=31.7

Q ss_pred             hhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          234 NLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       234 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      ++|++|++++|++. ++|..+.+|++|+.|++++|+|+
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            46899999999997 48888999999999999999985

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.21  E-value=3e-07  Score=73.25  Aligned_cols=148  Identities=22%  Similarity=0.268  Sum_probs=96.9

Q ss_pred             CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCC---C-------CCccccCCCCCCEEEccCCcccccC
Q 043038           28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG---E-------LPDCWMSDQNLKILKLSNNKFIGNL   97 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~-------~~~~~~~l~~L~~L~l~~n~~~~~~   97 (271)
                      +..++.+++++|.+..+..+.+++.+.+-.+|+..+++.-....   .       ...++.+|+.|+.+++|.|-+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            46889999999999988888899988888889999888654321   1       2334567899999999999987555


Q ss_pred             Ccc----cccCCCccEEEccCCccccccCccccCCCCccEEec----CCCCcccEEEeccCccCCCCch----hhhcCcc
Q 043038           98 PNS----FGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----ERFSRMVVLNLRSNKFHGPLPT----RFCDLAI  165 (271)
Q Consensus        98 ~~~----~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~  165 (271)
                      |..    +..-+.+.+|.+.+|.+....-..++.  .|..|-.    ..-|.|+.+....|.+......    .+.....
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            543    445678999999999875211112220  1111111    2345566777777776522211    1233356


Q ss_pred             ccEEeccCCccc
Q 043038          166 LQILDIADNNLS  177 (271)
Q Consensus       166 L~~L~l~~n~l~  177 (271)
                      |+++.+.+|.|.
T Consensus       187 lk~vki~qNgIr  198 (388)
T COG5238         187 LKEVKIQQNGIR  198 (388)
T ss_pred             ceeEEeeecCcC
Confidence            777777777664

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.12  E-value=5.6e-06  Score=78.18  Aligned_cols=130  Identities=25%  Similarity=0.330  Sum_probs=95.4

Q ss_pred             CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcc--cCCCCCccccCCCCCCEEEccCCcccccCCcccccCC
Q 043038           28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNY--LQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLA  105 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  105 (271)
                      ....+...+.+|.+.. ++....     .+.|++|-+..|.  +.......|..++.|..||+++|.-.+.+|..++.+-
T Consensus       522 ~~~~rr~s~~~~~~~~-~~~~~~-----~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEH-IAGSSE-----NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             hhheeEEEEeccchhh-ccCCCC-----CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence            3467777888877654 332222     5678999988886  4423344477899999999999876668999999999


Q ss_pred             CccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCc
Q 043038          106 FLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNN  175 (271)
Q Consensus       106 ~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  175 (271)
                      +|+.|+++++.+. .+|.+++.++.|.+|+           +..+.-...+|.....+.+|++|.+....
T Consensus       596 ~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln-----------l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  596 HLRYLDLSDTGIS-HLPSGLGNLKKLIYLN-----------LEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhcccccCCCcc-ccchHHHHHHhhheec-----------cccccccccccchhhhcccccEEEeeccc
Confidence            9999999999998 8999999888777666           44433323346666668888888887654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=5.3e-08  Score=78.40  Aligned_cols=85  Identities=26%  Similarity=0.180  Sum_probs=45.5

Q ss_pred             CCCEEEccCCccccc-CCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccC-ccCCC-Cch
Q 043038           82 NLKILKLSNNKFIGN-LPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSN-KFHGP-LPT  158 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n-~l~~~-~~~  158 (271)
                      .+|++|+++..|+.. ....+..+.+|+.+.+.++++.+.+...+..-..|+           .|+++.+ .++.. ..-
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~-----------~lnlsm~sG~t~n~~~l  254 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLV-----------RLNLSMCSGFTENALQL  254 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccce-----------eeccccccccchhHHHH
Confidence            366666666665521 112233455666666666666655444454444444           4445543 34321 223


Q ss_pred             hhhcCccccEEeccCCccc
Q 043038          159 RFCDLAILQILDIADNNLS  177 (271)
Q Consensus       159 ~~~~l~~L~~L~l~~n~l~  177 (271)
                      .+..++.|+.|+++||.+.
T Consensus       255 l~~scs~L~~LNlsWc~l~  273 (419)
T KOG2120|consen  255 LLSSCSRLDELNLSWCFLF  273 (419)
T ss_pred             HHHhhhhHhhcCchHhhcc
Confidence            4556677777777777654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.00  E-value=7.3e-07  Score=63.90  Aligned_cols=36  Identities=28%  Similarity=0.392  Sum_probs=14.7

Q ss_pred             CCCEEEccCCcccccCCcccccCCCccEEEccCCccc
Q 043038           82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~  118 (271)
                      .++.+++++|++. .+|..+..++.|+.++++.|.+.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence            3344444444443 33333444444444444444433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=8e-06  Score=47.09  Aligned_cols=35  Identities=40%  Similarity=0.524  Sum_probs=14.4

Q ss_pred             ccEEEccCcccCCCCCccccCCCCCCEEEccCCccc
Q 043038           59 LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFI   94 (271)
Q Consensus        59 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~   94 (271)
                      |++|++++|+|+ .+|..+..+++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            444444444444 33333444444444444444443

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.95  E-value=7.8e-07  Score=63.76  Aligned_cols=110  Identities=23%  Similarity=0.241  Sum_probs=85.4

Q ss_pred             CcccEEECcCCCCCCCc--cccC---CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038            8 TQLLFRSLDSNNMSGLL--PLIS---SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN   82 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~--~~~~---~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   82 (271)
                      ..+..+|+++|.+....  +..+   .+|+..++++|.+.. .|..+..   +++..+.+++++|.++ .+|..+..++.
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~---kf~t~t~lNl~~neis-dvPeE~Aam~a  101 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTI---KFPTATTLNLANNEIS-DVPEELAAMPA  101 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhh---ccchhhhhhcchhhhh-hchHHHhhhHH
Confidence            45677899999876321  1112   377888999999976 5544432   3568999999999999 88999999999


Q ss_pred             CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCcc
Q 043038           83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPAT  124 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~  124 (271)
                      |+.++++.|.+. ..|..+..+.++..|+..+|.+. .+|..
T Consensus       102 Lr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen  102 LRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             hhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            999999999998 67777778899999999998876 55544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.90  E-value=4.5e-05  Score=65.43  Aligned_cols=74  Identities=14%  Similarity=0.245  Sum_probs=48.0

Q ss_pred             cCCCcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCc-ccCCCCCccccCCCCC
Q 043038            5 TKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDN-YLQGELPDCWMSDQNL   83 (271)
Q Consensus         5 ~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L   83 (271)
                      ..+..++.|++++|.+.. +|...++|+.|.+++|.--..+|..++      +.|+.|.+++| .+. .+|.      +|
T Consensus        49 ~~~~~l~~L~Is~c~L~s-LP~LP~sLtsL~Lsnc~nLtsLP~~LP------~nLe~L~Ls~Cs~L~-sLP~------sL  114 (426)
T PRK15386         49 EEARASGRLYIKDCDIES-LPVLPNELTEITIENCNNLTTLPGSIP------EGLEKLTVCHCPEIS-GLPE------SV  114 (426)
T ss_pred             HHhcCCCEEEeCCCCCcc-cCCCCCCCcEEEccCCCCcccCCchhh------hhhhheEccCccccc-cccc------cc
Confidence            346778888998887664 455445788888887554334555443      46888888887 454 3443      45


Q ss_pred             CEEEccCCc
Q 043038           84 KILKLSNNK   92 (271)
Q Consensus        84 ~~L~l~~n~   92 (271)
                      +.|++..+.
T Consensus       115 e~L~L~~n~  123 (426)
T PRK15386        115 RSLEIKGSA  123 (426)
T ss_pred             ceEEeCCCC
Confidence            666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.86  E-value=5e-05  Score=58.18  Aligned_cols=83  Identities=29%  Similarity=0.247  Sum_probs=37.2

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccC-CcccccCCCcc
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNL-PNSFGSLAFLV  108 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~  108 (271)
                      ....+++++|.+..      ...|..++.|.+|.+++|.|+...|.--..+++|+.|.+++|.+.... -..+..+|+|+
T Consensus        43 ~~d~iDLtdNdl~~------l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK------LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhh------cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence            44555555555432      111222455555555555555333332223345555555555543110 01133345555


Q ss_pred             EEEccCCccc
Q 043038          109 WLDLGKNRLF  118 (271)
Q Consensus       109 ~l~l~~n~l~  118 (271)
                      .|.+-+|...
T Consensus       117 ~Ltll~Npv~  126 (233)
T KOG1644|consen  117 YLTLLGNPVE  126 (233)
T ss_pred             eeeecCCchh
Confidence            5555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.64  E-value=3.4e-05  Score=71.16  Aligned_cols=149  Identities=14%  Similarity=0.147  Sum_probs=76.0

Q ss_pred             cccEEECcCCCCCCCccc-----cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038            9 QLLFRSLDSNNMSGLLPL-----ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL   83 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L   83 (271)
                      +|+.||+++.......+.     -+|.|++|.+.+-.+..   +.+.....++++|.+||+|+..++ .+ .+++.+++|
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~---~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknL  197 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN---DDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNL  197 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc---hhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccH
Confidence            456666666543322221     15677777777655532   223333345677777777777766 33 455666667


Q ss_pred             CEEEccCCcccc-cCCcccccCCCccEEEccCCccccccCcccc---CCCCccEEecCCCCcccEEEeccCccCCCCchh
Q 043038           84 KILKLSNNKFIG-NLPNSFGSLAFLVWLDLGKNRLFGTIPATLK---NCTALESLDVERFSRMVVLNLRSNKFHGPLPTR  159 (271)
Q Consensus        84 ~~L~l~~n~~~~-~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~---~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~  159 (271)
                      +.|.+.+=.+.. ..-..+..+++|+.||++....... +..+.   .++       ..+|+|+.||.++..+++..-+.
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~-------~~LpeLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECG-------MVLPELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhc-------ccCccccEEecCCcchhHHHHHH
Confidence            666655544431 1112345667777777766554321 11000   011       33567777777777665432222


Q ss_pred             -hhcCccccEEe
Q 043038          160 -FCDLAILQILD  170 (271)
Q Consensus       160 -~~~l~~L~~L~  170 (271)
                       ....++|+.+.
T Consensus       270 ll~sH~~L~~i~  281 (699)
T KOG3665|consen  270 LLNSHPNLQQIA  281 (699)
T ss_pred             HHHhCccHhhhh
Confidence             22344444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.51  E-value=0.0002  Score=54.94  Aligned_cols=127  Identities=24%  Similarity=0.195  Sum_probs=83.9

Q ss_pred             ccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEE
Q 043038           31 LVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWL  110 (271)
Q Consensus        31 L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l  110 (271)
                      -+.+++++.++.. +.. +..   -..+...++|++|.+. .. ..|..++.|+.|.+.+|+|+...|.--..+++|+.|
T Consensus        21 e~e~~LR~lkip~-ien-lg~---~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L   93 (233)
T KOG1644|consen   21 ERELDLRGLKIPV-IEN-LGA---TLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTL   93 (233)
T ss_pred             ccccccccccccc-hhh-ccc---cccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceE
Confidence            3456666666432 111 111   0346778999999987 44 446788999999999999996666555567889999


Q ss_pred             EccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCC---chhhhcCccccEEeccCC
Q 043038          111 DLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPL---PTRFCDLAILQILDIADN  174 (271)
Q Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n  174 (271)
                      .+.+|.+. .+-    .+-.|     ..+|.|++|.+-+|.++..-   --.+..+++|+.||+..=
T Consensus        94 ~LtnNsi~-~l~----dl~pL-----a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   94 ILTNNSIQ-ELG----DLDPL-----ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             EecCcchh-hhh----hcchh-----ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            99999886 321    11111     23556777778888876321   124567888888888753

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=5.5e-05  Score=61.42  Aligned_cols=62  Identities=21%  Similarity=0.151  Sum_probs=29.8

Q ss_pred             CCcccEEEccCcccCCC--CCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCcc
Q 043038           56 TKRLEALKLNDNYLQGE--LPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL  117 (271)
Q Consensus        56 ~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l  117 (271)
                      .+.++++++..|.|+.+  +...+..++.|+.|+++.|.+...+...-....+|+.+.+.+..+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL  133 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence            34556666666665521  222334556666666666655422111112334555555555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.26  E-value=3.1e-05  Score=71.46  Aligned_cols=107  Identities=20%  Similarity=0.284  Sum_probs=63.0

Q ss_pred             CcccEEEccCccc-CCCCCcccc-CCCCCCEEEccCCccc-ccCCcccccCCCccEEEccCCccccccCccccCCCCccE
Q 043038           57 KRLEALKLNDNYL-QGELPDCWM-SDQNLKILKLSNNKFI-GNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALES  133 (271)
Q Consensus        57 ~~L~~L~l~~n~l-~~~~~~~~~-~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~  133 (271)
                      .+|+.|++++... ....|..++ -+|+|+.|.+++-.+. ..+...+..+|+|..||++++.++. + .++..+++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence            4688888887642 212222233 4688888888875543 2223445577888888888888773 3 66777777766


Q ss_pred             EecCCCCcccEEEeccCccCC-CCchhhhcCccccEEeccCCcc
Q 043038          134 LDVERFSRMVVLNLRSNKFHG-PLPTRFCDLAILQILDIADNNL  176 (271)
Q Consensus       134 L~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l  176 (271)
                      |.+           .+=.+.. ..-..+..+++|+.||+|..+.
T Consensus       200 L~m-----------rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~  232 (699)
T KOG3665|consen  200 LSM-----------RNLEFESYQDLIDLFNLKKLRVLDISRDKN  232 (699)
T ss_pred             Hhc-----------cCCCCCchhhHHHHhcccCCCeeecccccc
Confidence            652           1111211 1123455677777777776544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.14  E-value=0.00067  Score=58.40  Aligned_cols=13  Identities=15%  Similarity=0.141  Sum_probs=7.7

Q ss_pred             cccEEeccCCccc
Q 043038          165 ILQILDIADNNLS  177 (271)
Q Consensus       165 ~L~~L~l~~n~l~  177 (271)
                      +|+.|++++|...
T Consensus       157 SLk~L~Is~c~~i  169 (426)
T PRK15386        157 SLKTLSLTGCSNI  169 (426)
T ss_pred             cccEEEecCCCcc
Confidence            5666666665543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.00012  Score=59.57  Aligned_cols=85  Identities=20%  Similarity=0.246  Sum_probs=41.5

Q ss_pred             CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccc-cCCcccccCCCc
Q 043038           29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIG-NLPNSFGSLAFL  107 (271)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L  107 (271)
                      ..++.+++.+|.+.+ ..+ +...+.++|.|+.|+++.|++...+...-....+|+.|-+.+..+.- ........+|.+
T Consensus        71 ~~v~elDL~~N~iSd-Wse-I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTGNLISD-WSE-IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhcccchhcc-HHH-HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            466666666666643 211 11223346666667777666653221111234556666665554431 112223345555


Q ss_pred             cEEEccCC
Q 043038          108 VWLDLGKN  115 (271)
Q Consensus       108 ~~l~l~~n  115 (271)
                      +.++++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            55555555

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.00012  Score=59.03  Aligned_cols=98  Identities=28%  Similarity=0.255  Sum_probs=64.9

Q ss_pred             CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCc--ccccCCC
Q 043038           29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPN--SFGSLAF  106 (271)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~  106 (271)
                      .+.+.|+.-||.+.+ |.  ++.   +|+.|++|.|+-|+|+ .+ ..|..|+.|++|++..|.|. .+..  -+.++++
T Consensus        19 ~~vkKLNcwg~~L~D-Is--ic~---kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlps   89 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDD-IS--ICE---KMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPS   89 (388)
T ss_pred             HHhhhhcccCCCccH-HH--HHH---hcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCch
Confidence            355667777777654 22  332   4888888888888887 33 44577888888888888887 3322  3457888


Q ss_pred             ccEEEccCCccccccCc-----cccCCCCccEEe
Q 043038          107 LVWLDLGKNRLFGTIPA-----TLKNCTALESLD  135 (271)
Q Consensus       107 L~~l~l~~n~l~~~~~~-----~~~~l~~L~~L~  135 (271)
                      |+.|.+..|.-.+..+.     .+..+++|+.||
T Consensus        90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888888876554333     234456666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.37  E-value=0.0025  Score=50.93  Aligned_cols=60  Identities=28%  Similarity=0.258  Sum_probs=28.5

Q ss_pred             CcccEEEccCcccCCCCCccccCCCCCCEEEccCC--cccccCCcccccCCCccEEEccCCccc
Q 043038           57 KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNN--KFIGNLPNSFGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        57 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~l~~L~~l~l~~n~l~  118 (271)
                      ..|+.+.+.+..++ .. ..|-.+++|+.|.++.|  ++.+.++-.....|+|+++++++|++.
T Consensus        43 ~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   43 VELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            34444444444443 11 22334455666666665  333333322333466666666666655

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.32  E-value=0.014  Score=41.98  Aligned_cols=57  Identities=16%  Similarity=0.213  Sum_probs=21.9

Q ss_pred             CCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccC
Q 043038           56 TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGK  114 (271)
Q Consensus        56 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~  114 (271)
                      +..|+.+.+.. .++.....+|.++.+++.+.+..+ +.......|...++++.+.+..
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~   67 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN   67 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence            44555555543 233233444555555555555543 3322333444444555555543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.17  E-value=0.0028  Score=50.61  Aligned_cols=85  Identities=26%  Similarity=0.211  Sum_probs=60.0

Q ss_pred             CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCc--ccCCCCCccccCCCCCCEEEccCCccccc-CCcccccC
Q 043038           28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDN--YLQGELPDCWMSDQNLKILKLSNNKFIGN-LPNSFGSL  104 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l  104 (271)
                      +..++.+.+.+..++..  ..++.    +++|+.|.++.|  .+.+.++.....+++|+++.++.|++... .-.....+
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~----Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPK----LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL  115 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCC----cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh
Confidence            55788888888777642  22443    889999999999  55555555455679999999999998721 11234566


Q ss_pred             CCccEEEccCCccc
Q 043038          105 AFLVWLDLGKNRLF  118 (271)
Q Consensus       105 ~~L~~l~l~~n~l~  118 (271)
                      .+|..|++..|..+
T Consensus       116 ~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVT  129 (260)
T ss_pred             cchhhhhcccCCcc
Confidence            77888888887765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.07  E-value=0.00021  Score=57.63  Aligned_cols=76  Identities=25%  Similarity=0.208  Sum_probs=55.9

Q ss_pred             CCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCc--cccCCCCccE
Q 043038           56 TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA--TLKNCTALES  133 (271)
Q Consensus        56 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~--~~~~l~~L~~  133 (271)
                      +.+.+.|++.+|.+. .+. ....++.|+.|.++-|+|+ .+. .+..+++|++|++..|.+. .+.+  .+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIs-sL~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKIS-SLA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccc-cch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence            557888999999987 443 3368999999999999998 332 3667899999999999987 3332  3445555555


Q ss_pred             Eec
Q 043038          134 LDV  136 (271)
Q Consensus       134 L~l  136 (271)
                      |.+
T Consensus        93 LWL   95 (388)
T KOG2123|consen   93 LWL   95 (388)
T ss_pred             Hhh
Confidence            543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.86  E-value=0.033  Score=39.93  Aligned_cols=59  Identities=17%  Similarity=0.256  Sum_probs=30.0

Q ss_pred             CCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCC
Q 043038           55 ETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKN  115 (271)
Q Consensus        55 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n  115 (271)
                      .++.++.+.+.++ +......+|..+..++.+.+.. .+.......|...++++.+.+..+
T Consensus        33 ~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   33 NCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             T-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred             ccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence            3556777777664 4434445666666677777765 322133345555677777777554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.25  E-value=0.009  Score=28.58  Aligned_cols=11  Identities=36%  Similarity=0.534  Sum_probs=4.3

Q ss_pred             CEEEccCCccc
Q 043038           84 KILKLSNNKFI   94 (271)
Q Consensus        84 ~~L~l~~n~~~   94 (271)
                      ++||+++|.++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            33333333333

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.16  E-value=0.014  Score=27.94  Aligned_cols=18  Identities=44%  Similarity=0.805  Sum_probs=8.6

Q ss_pred             ccEEeccCCccceecCccc
Q 043038          166 LQILDIADNNLSGAIPNYI  184 (271)
Q Consensus       166 L~~L~l~~n~l~~~~~~~~  184 (271)
                      |+.|++++|+++ .+|..+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555554 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.02  E-value=0.00013  Score=64.53  Aligned_cols=40  Identities=25%  Similarity=0.283  Sum_probs=22.6

Q ss_pred             ccEEEccCCccccccchhhhhhccCCCcccEEEccCcccC
Q 043038           31 LVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ   70 (271)
Q Consensus        31 L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~   70 (271)
                      +..+.+.+|.+.......+...+...+.|..|+++.|.+.
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~  128 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG  128 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence            5555566666555444455555555556666666666554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.40  E-value=0.00062  Score=60.32  Aligned_cols=161  Identities=26%  Similarity=0.261  Sum_probs=95.5

Q ss_pred             ccEEECcCCCCCCCcccc-------CCCccEEEccCCccccccchhhhhhccCC-CcccEEEccCcccCCC----CCccc
Q 043038           10 LLFRSLDSNNMSGLLPLI-------SSNLVYLGLSDNSFLGSISHFLCDKINET-KRLEALKLNDNYLQGE----LPDCW   77 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~-------~~~L~~L~l~~n~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~----~~~~~   77 (271)
                      +..+++.+|.+.......       ...++.|++++|.+.+.....++..+... ..+++|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            677888888887654332       35888899999999866666666655544 5677788888887743    33445


Q ss_pred             cCCCCCCEEEccCCcccc----cCCcc----cccCCCccEEEccCCccccccCcccc-CCCCccEEecCCCCc-ccEEEe
Q 043038           78 MSDQNLKILKLSNNKFIG----NLPNS----FGSLAFLVWLDLGKNRLFGTIPATLK-NCTALESLDVERFSR-MVVLNL  147 (271)
Q Consensus        78 ~~l~~L~~L~l~~n~~~~----~~~~~----~~~l~~L~~l~l~~n~l~~~~~~~~~-~l~~L~~L~l~~~~~-L~~L~l  147 (271)
                      .....++.++++.|.+..    ..+..    +....+++++++.+|.++......+. .+        ...+. +..+++
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l--------~~~~~~~~el~l  240 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVL--------ASGESLLRELDL  240 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHH--------hccchhhHHHHH
Confidence            556778888888887631    11222    22456777788877776521111000 01        11112 334667


Q ss_pred             ccCccCCC----CchhhhcC-ccccEEeccCCccce
Q 043038          148 RSNKFHGP----LPTRFCDL-AILQILDIADNNLSG  178 (271)
Q Consensus       148 ~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l~~  178 (271)
                      ..|.+.+.    ..+.+... ..++.+++.+|.++.
T Consensus       241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~  276 (478)
T KOG4308|consen  241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE  276 (478)
T ss_pred             HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence            77776532    12223333 456777777777763

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.96  E-value=0.0075  Score=53.64  Aligned_cols=184  Identities=19%  Similarity=0.090  Sum_probs=91.9

Q ss_pred             CCcccEEECcCCCCCCC---cccc--CCCccEEEccCC-ccccccchhhhhhccCCCcccEEEccCcc-cCCCCCcccc-
Q 043038            7 FTQLLFRSLDSNNMSGL---LPLI--SSNLVYLGLSDN-SFLGSISHFLCDKINETKRLEALKLNDNY-LQGELPDCWM-   78 (271)
Q Consensus         7 ~~~L~~L~l~~n~~~~~---~~~~--~~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~-   78 (271)
                      ++.++.+.+.++.-...   .+..  .++|+.|+++++ ......+.........+++|+.++++.+. ++...-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45666666665533221   1111  457888888763 22222222222222336777888888776 5532222222 


Q ss_pred             CCCCCCEEEccCCc-ccccC-CcccccCCCccEEEccCCcccc-c-cCccccCCCCccEEec---CCCCcccEEEeccCc
Q 043038           79 SDQNLKILKLSNNK-FIGNL-PNSFGSLAFLVWLDLGKNRLFG-T-IPATLKNCTALESLDV---ERFSRMVVLNLRSNK  151 (271)
Q Consensus        79 ~l~~L~~L~l~~n~-~~~~~-~~~~~~l~~L~~l~l~~n~l~~-~-~~~~~~~l~~L~~L~l---~~~~~L~~L~l~~n~  151 (271)
                      .++.|+.|.+.++. ++... .......+.|++++++++.... . +......+++++.+.+   ..++.++.+.+.+..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~  346 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL  346 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence            26778888766665 44221 1223346678888887765421 1 2222233555444443   333446665555443


Q ss_pred             cC---CCCchhhhcCccccEEeccCCccceec-CcccccccCC
Q 043038          152 FH---GPLPTRFCDLAILQILDIADNNLSGAI-PNYINNVTGM  190 (271)
Q Consensus       152 l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L  190 (271)
                      -.   .........++.++.+.+.++...... ...+..++.+
T Consensus       347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            21   122234556777888888777643211 1334445544

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.90  E-value=0.042  Score=24.38  Aligned_cols=14  Identities=29%  Similarity=0.489  Sum_probs=8.6

Q ss_pred             CCCCEEEccCCCCC
Q 043038          258 KATQSLNFSHNTFT  271 (271)
Q Consensus       258 ~~L~~L~l~~n~i~  271 (271)
                      ++|+.|++++|+|+
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            46888888888764

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.45  E-value=0.027  Score=27.47  Aligned_cols=21  Identities=10%  Similarity=-0.007  Sum_probs=12.1

Q ss_pred             hhHhhhhhcCCcccccccHhh
Q 043038          234 NLVMVTIVSRNDLLKNVPLEV  254 (271)
Q Consensus       234 ~~L~~L~L~~n~l~~~~~~~l  254 (271)
                      ++|+.|++++|.+.++.+..+
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHHh
Confidence            456777777777766555544

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=90.29  E-value=0.088  Score=46.80  Aligned_cols=146  Identities=23%  Similarity=0.119  Sum_probs=81.7

Q ss_pred             cCCCcccEEECcCC-CCCCCcc-------ccCCCccEEEccCCc-cccccchhhhhhccCCCcccEEEccCcc-cCCC-C
Q 043038            5 TKFTQLLFRSLDSN-NMSGLLP-------LISSNLVYLGLSDNS-FLGSISHFLCDKINETKRLEALKLNDNY-LQGE-L   73 (271)
Q Consensus         5 ~~~~~L~~L~l~~n-~~~~~~~-------~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~   73 (271)
                      ...+.|+.|+++++ ......+       ....+++.++++++. +++..-..+.   ..++.|+.|.+.++. ++.. +
T Consensus       211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~---~~c~~L~~L~l~~c~~lt~~gl  287 (482)
T KOG1947|consen  211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA---SRCPNLETLSLSNCSNLTDEGL  287 (482)
T ss_pred             hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH---hhCCCcceEccCCCCccchhHH
Confidence            35678999999873 2221111       124689999999988 4432222222   237899999988776 5532 2


Q ss_pred             CccccCCCCCCEEEccCCccc-c-cCCcccccCCCccEEEccCCc----cccccCccccCCC--CccEEecCCCCcccEE
Q 043038           74 PDCWMSDQNLKILKLSNNKFI-G-NLPNSFGSLAFLVWLDLGKNR----LFGTIPATLKNCT--ALESLDVERFSRMVVL  145 (271)
Q Consensus        74 ~~~~~~l~~L~~L~l~~n~~~-~-~~~~~~~~l~~L~~l~l~~n~----l~~~~~~~~~~l~--~L~~L~l~~~~~L~~L  145 (271)
                      ......++.|++|+++++... . .........++++.+.+....    ++...-..+....  .+..+.+..+++++.+
T Consensus       288 ~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~  367 (482)
T KOG1947|consen  288 VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDL  367 (482)
T ss_pred             HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchh
Confidence            233456788999999988653 1 122223345555555443322    2211111111111  3445555777788888


Q ss_pred             EeccCccC
Q 043038          146 NLRSNKFH  153 (271)
Q Consensus       146 ~l~~n~l~  153 (271)
                      .+..+...
T Consensus       368 ~l~~~~~~  375 (482)
T KOG1947|consen  368 SLSYCGIS  375 (482)
T ss_pred             hhhhhhcc
Confidence            88777643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.75  E-value=0.0058  Score=48.24  Aligned_cols=84  Identities=20%  Similarity=0.177  Sum_probs=62.8

Q ss_pred             CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCc
Q 043038           28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL  107 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  107 (271)
                      +...+.||++.|.+..     +...|..++.+..|+++.|.+. ..|..++....+..+++..|..+ ..|.++...+.+
T Consensus        41 ~kr~tvld~~s~r~vn-----~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVN-----LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             cceeeeehhhhhHHHh-----hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            4577778888887643     2333334677888888888887 67777777777888888888887 778888888888


Q ss_pred             cEEEccCCccc
Q 043038          108 VWLDLGKNRLF  118 (271)
Q Consensus       108 ~~l~l~~n~l~  118 (271)
                      +.++..+|.+.
T Consensus       114 k~~e~k~~~~~  124 (326)
T KOG0473|consen  114 KKNEQKKTEFF  124 (326)
T ss_pred             chhhhccCcch
Confidence            88888888765

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.17  E-value=0.12  Score=40.01  Aligned_cols=83  Identities=14%  Similarity=0.129  Sum_probs=38.2

Q ss_pred             CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccC-ccCCCCchhh
Q 043038           82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSN-KFHGPLPTRF  160 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n-~l~~~~~~~~  160 (271)
                      .++.+|-++..|..+.-..+..++.++.+.+..|.--+.  ..+..+.       ...++|+.|++++| .||+.--..+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD--~~L~~l~-------~~~~~L~~L~lsgC~rIT~~GL~~L  172 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDD--WCLERLG-------GLAPSLQDLDLSGCPRITDGGLACL  172 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhh--HHHHHhc-------ccccchheeeccCCCeechhHHHHH
Confidence            455566666555433323344455555555555542211  1111111       11345556666655 4554333445


Q ss_pred             hcCccccEEeccC
Q 043038          161 CDLAILQILDIAD  173 (271)
Q Consensus       161 ~~l~~L~~L~l~~  173 (271)
                      ..+++|+.|.+.+
T Consensus       173 ~~lknLr~L~l~~  185 (221)
T KOG3864|consen  173 LKLKNLRRLHLYD  185 (221)
T ss_pred             HHhhhhHHHHhcC
Confidence            5556666665543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.08  E-value=0.36  Score=23.82  Aligned_cols=13  Identities=23%  Similarity=0.442  Sum_probs=7.1

Q ss_pred             cccEEEeccCccC
Q 043038          141 RMVVLNLRSNKFH  153 (271)
Q Consensus       141 ~L~~L~l~~n~l~  153 (271)
                      +|++|++++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00370        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4455555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.08  E-value=0.36  Score=23.82  Aligned_cols=13  Identities=23%  Similarity=0.442  Sum_probs=7.1

Q ss_pred             cccEEEeccCccC
Q 043038          141 RMVVLNLRSNKFH  153 (271)
Q Consensus       141 ~L~~L~l~~n~l~  153 (271)
                      +|++|++++|.++
T Consensus         3 ~L~~L~L~~N~l~   15 (26)
T smart00369        3 NLRELDLSNNQLS   15 (26)
T ss_pred             CCCEEECCCCcCC
Confidence            4455555555555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.72  E-value=0.039  Score=42.64  Aligned_cols=34  Identities=12%  Similarity=-0.053  Sum_probs=19.5

Q ss_pred             HhhHhhhhhcCCc-ccccccHhhhccCCCCEEEcc
Q 043038          233 LNLVMVTIVSRND-LLKNVPLEVRNLKATQSLNFS  266 (271)
Q Consensus       233 ~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~  266 (271)
                      .++|+.|++++|. |++-.-.++..+++|+.|.+.
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY  184 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence            4566666666555 444455555666666555543

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=88.57  E-value=0.41  Score=23.87  Aligned_cols=15  Identities=27%  Similarity=0.468  Sum_probs=11.8

Q ss_pred             cCCCCEEEccCCCCC
Q 043038          257 LKATQSLNFSHNTFT  271 (271)
Q Consensus       257 l~~L~~L~l~~n~i~  271 (271)
                      +.+|++|++++|+|+
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            457888888888874

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=84.82  E-value=0.84  Score=23.10  Aligned_cols=14  Identities=21%  Similarity=0.413  Sum_probs=11.0

Q ss_pred             CCCCEEEccCCCCC
Q 043038          258 KATQSLNFSHNTFT  271 (271)
Q Consensus       258 ~~L~~L~l~~n~i~  271 (271)
                      ++|++|||++|.|+
T Consensus         2 ~~L~~LdL~~N~i~   15 (28)
T smart00368        2 PSLRELDLSNNKLG   15 (28)
T ss_pred             CccCEEECCCCCCC
Confidence            57888888888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	271
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-11
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		5e-08
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-11
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		5e-08
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-10

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 99/235 (42%), Gaps = 43/235 (18%)
Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPL----ISSNLVYLGLSDNSFLGSISHFLCDKINET 56
           M  L K   L    L  N  SG LP     +S++L+ L LS N+F G I   LC   N  
Sbjct: 333 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPK 390
Query: 57  KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL----VWLDL 112
             L+ L L +N   G++P    +   L  L LS N   G +P+S GSL+ L    +WL++
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 113 --GK------------------NRLFGTIPATLKNCTALESLD-------------VERF 139
             G+                  N L G IP+ L NCT L  +              + R 
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 140 SRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTN 194
             + +L L +N F G +P    D   L  LD+  N  +G IP  +   +G +  N
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 83  LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRM 142
           +  L +S N   G +P   GS+ +L  L+LG N + G+IP  + +   L           
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN---------- 680
Query: 143 VVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIP 181
            +L+L SNK  G +P     L +L  +D+++NNLSG IP
Sbjct: 681 -ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 99/235 (42%), Gaps = 43/235 (18%)
Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPL----ISSNLVYLGLSDNSFLGSISHFLCDKINET 56
           M  L K   L    L  N  SG LP     +S++L+ L LS N+F G I   LC   N  
Sbjct: 336 MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPK 393
Query: 57  KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL----VWLDL 112
             L+ L L +N   G++P    +   L  L LS N   G +P+S GSL+ L    +WL++
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 113 --GK------------------NRLFGTIPATLKNCTALESLD-------------VERF 139
             G+                  N L G IP+ L NCT L  +              + R 
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 140 SRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTN 194
             + +L L +N F G +P    D   L  LD+  N  +G IP  +   +G +  N
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 83  LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRM 142
           +  L +S N   G +P   GS+ +L  L+LG N + G+IP  + +   L           
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLN---------- 683
Query: 143 VVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIP 181
            +L+L SNK  G +P     L +L  +D+++NNLSG IP
Sbjct: 684 -ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 91/193 (47%), Gaps = 15/193 (7%)
Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEA 61
           P + K TQL +  +   N+SG +P   S +  L   D S+  ++S  L   I+    L  
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY-NALSGTLPPSISSLPNLVG 153
Query: 62  LKLNDNYLQGELPDCWMSDQNL-KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL--- 117
           +  + N + G +PD + S   L   + +S N+  G +P +F +L  L ++DL +N L   
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212
Query: 118 ----FGTIPAT-----LKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI 168
               FG+   T      KN  A +   V     +  L+LR+N+ +G LP     L  L  
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272
Query: 169 LDIADNNLSGAIP 181
           L+++ NNL G IP
Sbjct: 273 LNVSFNNLCGEIP 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	271
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-47
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-27
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-31
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-28
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  167 bits (426), Expect = 1e-47
 Identities = 66/276 (23%), Positives = 101/276 (36%), Gaps = 22/276 (7%)

Query: 14  SLDSNNMSGLLP-----LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNY 68
            L SNN SG +         + L  L L +N F G I   L +       L +L L+ NY
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN----CSELVSLHLSFNY 429

Query: 69  LQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNC 128
           L G +P    S   L+ LKL  N   G +P     +  L  L L  N L G IP+ L NC
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489

Query: 129 TALESLDVE-------------RFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNN 175
           T L  + +              R   + +L L +N F G +P    D   L  LD+  N 
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549

Query: 176 LSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNL 235
            +G IP  +   +G +  N  +     ++               +  +    E    L+ 
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609

Query: 236 VMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
                ++      +      N  +   L+ S+N  +
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  121 bits (306), Expect = 2e-31
 Identities = 67/290 (23%), Positives = 103/290 (35%), Gaps = 52/290 (17%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPL---ISSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
            +L   ++L    L  N + G +P        L  L L  N   G I   L +       
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN----CTN 491

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
           L  + L++N L GE+P      +NL ILKLSNN F GN+P   G    L+WLDL  N   
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551

Query: 119 GTIPATLKNCTALES-----------LDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQ 167
           GTIPA +   +   +           +  +   +         +F G    +   L+   
Sbjct: 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611

Query: 168 ILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSR 223
             +I      G      +N   M+      N  S        +P                
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY------IP---------------- 649

Query: 224 EEVVEYNEILNLVMVTI--VSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
                  EI ++  + I  +  ND+  ++P EV +L+    L+ S N   
Sbjct: 650 ------KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  120 bits (303), Expect = 5e-31
 Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 26/203 (12%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLIS--SNLVYLGLSDNSFLGSISHFLCDKINETKRLEA 61
           +++   L F  + SNN S  +P +   S L +L +S N   G  S      I+    L+ 
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA----ISTCTELKL 251

Query: 62  LKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNS-FGSLAFLVWLDLGKNRLFGT 120
           L ++ N   G +P   +   +L+ L L+ NKF G +P+   G+   L  LDL  N  +G 
Sbjct: 252 LNISSNQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 121 IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPT-RFCDLAILQILDIADNNLSGA 179
           +P    +C+ LESL            L SN F G LP      +  L++LD++ N  SG 
Sbjct: 310 VPPFFGSCSLLESLA-----------LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358

Query: 180 IPNYINNVTGMVTT-----NSFS 197
           +P  + N++  + T     N+FS
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFS 381

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  117 bits (296), Expect = 5e-30
 Identities = 63/221 (28%), Positives = 90/221 (40%), Gaps = 31/221 (14%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
           P L   + L    +  N +SG         + L  L +S N F+G I           K 
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL------KS 270

Query: 59  LEALKLNDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117
           L+ L L +N   GE+PD        L  L LS N F G +P  FGS + L  L L  N  
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 118 FGTIPA-TLKNCTALESLDVER--------------FSRMVVLNLRSNKFHGPLPTRFCD 162
            G +P  TL     L+ LD+                 + ++ L+L SN F GP+    C 
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390

Query: 163 --LAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFS 197
                LQ L + +N  +G IP  ++N + +V+     N  S
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (285), Expect = 1e-28
 Identities = 44/198 (22%), Positives = 75/198 (37%), Gaps = 22/198 (11%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLIS--SNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
            +L   T L    L +++++G +      ++L  L LS NS  G ++      +     L
Sbjct: 71  SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTS--LGSCSGL 128

Query: 60  EALKLNDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLPNSF---GSLAFLVWLDLGKN 115
           + L ++ N L             +L++L LS N   G     +        L  L +  N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

Query: 116 RLFGTIPATLKNCTALESLDVE------------RFSRMVVLNLRSNKFHGPLPTRFCDL 163
           ++ G +   +  C  LE LDV               S +  L++  NK  G         
Sbjct: 189 KISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTC 246

Query: 164 AILQILDIADNNLSGAIP 181
             L++L+I+ N   G IP
Sbjct: 247 TELKLLNISSNQFVGPIP 264

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (273), Expect = 5e-27
 Identities = 40/193 (20%), Positives = 75/193 (38%), Gaps = 14/193 (7%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEA 61
             L     L++  L++N  +G +P          ++ N   G    ++ +  +  K+   
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-GKIAANFIAGKRYVYIKN--DGMKKECH 588

Query: 62  LKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI 121
              N    QG   +            +++  + G+   +F +   +++LD+  N L G I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 122 PATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIP 181
           P  + +   L  L           NL  N   G +P    DL  L ILD++ N L G IP
Sbjct: 649 PKEIGSMPYLFIL-----------NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697

Query: 182 NYINNVTGMVTTN 194
             ++ +T +   +
Sbjct: 698 QAMSALTMLTEID 710

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =   99 bits (250), Expect = 5e-24
 Identities = 40/173 (23%), Positives = 70/173 (40%), Gaps = 12/173 (6%)

Query: 11  LFRSLDSNNMSGLLPLISSNLVYLGLSDNSF-LGSISHFLCDKINETKRLEALKLNDNYL 69
               + +N ++G   +   N         +  L        +++N         +     
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620

Query: 70  QGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCT 129
            G     + ++ ++  L +S N   G +P   GS+ +L  L+LG N + G+IP  + +  
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680

Query: 130 ALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPN 182
            L  LD           L SNK  G +P     L +L  +D+++NNLSG IP 
Sbjct: 681 GLNILD-----------LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 99.2 bits (248), Expect = 9e-24
 Identities = 54/198 (27%), Positives = 76/198 (38%), Gaps = 29/198 (14%)

Query: 14  SLDSNNMSGLLPLISS------NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDN 67
            L S  ++     +SS       L  L LS++   GS+S F C     +  L +L L+ N
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKC-----SASLTSLDLSRN 110

Query: 68  YLQGELPDC-WMSD-QNLKILKLSNNKFIGNLPNS-FGSLAFLVWLDLGKNRLFGTIPAT 124
            L G +     +     LK L +S+N        S    L  L  LDL  N + G     
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 125 LK---NCTALESLD-----------VERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILD 170
                 C  L+ L            V R   +  L++ SN F   +P    D + LQ LD
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLD 229

Query: 171 IADNNLSGAIPNYINNVT 188
           I+ N LSG     I+  T
Sbjct: 230 ISGNKLSGDFSRAISTCT 247

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.1 bits (245), Expect = 2e-23
 Identities = 56/288 (19%), Positives = 94/288 (32%), Gaps = 72/288 (25%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPL---ISSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
             L+  T L + SL +N ++G +P       NL  L LS+NSF G+I   L D     + 
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD----CRS 539

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKN--R 116
           L  L LN N   G +P             ++ N   G       +           N   
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595

Query: 117 LFGTIPATLKNCTALESLD-------------VERFSRMVVLNLRSNKFHGPLPTRFCDL 163
             G     L   +     +              +    M+ L++  N   G +P     +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655

Query: 164 AILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSR 223
             L IL++  N++SG+IP+ + ++ G+                                 
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGL--------------------------------- 682

Query: 224 EEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
                   IL+L      S N L   +P  +  L     ++ S+N  +
Sbjct: 683 -------NILDL------SSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.4 bits (181), Expect = 7e-15
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 18/139 (12%)

Query: 58  RLEALKLNDNYLQ---GELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGK 114
           ++ ++ L+   L      +    +S   L+ L LSN+   G++   F   A L  LDL +
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSR 109

Query: 115 NRLFGTIPA--TLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPT-RFCDLAILQILDI 171
           N L G +    +L +C+ L+ L+           + SN    P        L  L++LD+
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLN-----------VSSNTLDFPGKVSGGLKLNSLEVLDL 158

Query: 172 ADNNLSGAIPNYINNVTGM 190
           + N++SGA         G 
Sbjct: 159 SANSISGANVVGWVLSDGC 177

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 67.2 bits (165), Expect = 6e-13
 Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 7/127 (5%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLG---LSDNSFLGSISHFLCDKINETK 57
              L + +     ++ S    G       N   +    +S N   G I      +I    
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP----KEIGSMP 656

Query: 58  RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117
            L  L L  N + G +PD     + L IL LS+NK  G +P +  +L  L  +DL  N L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716

Query: 118 FGTIPAT 124
            G IP  
Sbjct: 717 SGPIPEM 723

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  115 bits (291), Expect = 8e-31
 Identities = 44/191 (23%), Positives = 78/191 (40%), Gaps = 21/191 (10%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPL-IS--SNLVYLGLSDNSFLGSISHFLCDKINETKR 58
           P + K TQL +  +   N+SG +P  +S    LV L  S N+  G++   +         
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS----LPN 150

Query: 59  LEALKLNDNYLQGELPDCWMSDQNL-KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117
           L  +  + N + G +PD + S   L   + +S N+  G +P +F +L  L ++DL +N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209

Query: 118 FGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
            G       +    + +            L  N     L  +      L  LD+ +N + 
Sbjct: 210 EGDASVLFGSDKNTQKIH-----------LAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY 257

Query: 178 GAIPNYINNVT 188
           G +P  +  + 
Sbjct: 258 GTLPQGLTQLK 268

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  108 bits (273), Expect = 4e-28
 Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 19/184 (10%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPL-IS--SNLVYLGLSDNSFLGSISHFLCDKINETKR 58
             L++   L+      N +SG LP  IS   NLV +    N   G+I        + +K 
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG---SFSKL 175

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
             ++ ++ N L G++P    ++ NL  + LS N   G+    FGS      + L KN L 
Sbjct: 176 FTSMTISRNRLTGKIPPT-FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 119 GTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSG 178
             +   +     L  LD           LR+N+ +G LP     L  L  L+++ NNL G
Sbjct: 235 FDLG-KVGLSKNLNGLD-----------LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 179 AIPN 182
            IP 
Sbjct: 283 EIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  107 bits (270), Expect = 1e-27
 Identities = 56/281 (19%), Positives = 94/281 (33%), Gaps = 56/281 (19%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLISS-----NLVYLGLSD-NSFLGSISHFLCDKINET 56
             T+  ++    L   N+    P+ SS      L +L +   N+ +G I       I + 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA----IAKL 100

Query: 57  KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR 116
            +L  L +    + G +PD     + L  L  S N   G LP S  SL  LV +    NR
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 117 LFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNL 176
           + G IP +  + + L             + +  N+  G +P  F +L  L  +D++ N L
Sbjct: 161 ISGAIPDSYGSFSKL----------FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209

Query: 177 SGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEI 232
            G       +           NS +        +                        ++
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFD------LG-----------------------KV 240

Query: 233 LNLVMVTI--VSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
                +    +  N +   +P  +  LK   SLN S N   
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  101 bits (255), Expect = 1e-25
 Identities = 53/256 (20%), Positives = 90/256 (35%), Gaps = 52/256 (20%)

Query: 25  PLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE--LPDCWMSDQN 82
             +SS L      + ++LG +    CD   +T R+  L L+   L     +P    +   
Sbjct: 22  TTLSSWLPTTDCCNRTWLGVL----CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77

Query: 83  LKILKLSN-NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSR 141
           L  L +   N  +G +P +   L  L +L +    + G IP  L     L +LD      
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD------ 131

Query: 142 MVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTT-----NSF 196
                   N   G LP     L  L  +    N +SGAIP+   + + + T+     N  
Sbjct: 132 -----FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186

Query: 197 SRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTI-VSRNDLLKNVPLEVR 255
           +        +P                          NL +  + +SRN L  +  +   
Sbjct: 187 TGK------IP----------------------PTFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 256 NLKATQSLNFSHNTFT 271
           + K TQ ++ + N+  
Sbjct: 219 SDKNTQKIHLAKNSLA 234

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 41/159 (25%), Positives = 60/159 (37%), Gaps = 23/159 (14%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLP--LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
           + +K    +  ++  N ++G +P    + NL ++ LS N   G  S          K  +
Sbjct: 171 SFSKLFTSM--TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL----FGSDKNTQ 224

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT 120
            + L  N L  +L       +NL  L L NN+  G LP     L FL  L++  N L G 
Sbjct: 225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 121 IPATLKNCTALESLDVERFSRMVVLNLRSNKFH--GPLP 157
           IP                  R  V    +NK     PLP
Sbjct: 284 IPQGGN------------LQRFDVSAYANNKCLCGSPLP 310

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.5 bits (220), Expect = 4e-20
 Identities = 36/187 (19%), Positives = 59/187 (31%), Gaps = 21/187 (11%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLIS----SNLVYLGLSDNSFLGSISHFLCDKINETK 57
            N     QL       +N+  +          NL+YL +S      + +           
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----LS 445

Query: 58  RLEALKLNDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR 116
            LE LK+  N  Q        ++ +NL  L LS  +     P +F SL+ L  L++  N 
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 117 LFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAI-LQILDIADNN 175
            F       K   +L+ LD              N                L  L++  N+
Sbjct: 506 FFSLDTFPYKCLNSLQVLD-----------YSLNHIMTSKKQELQHFPSSLAFLNLTQND 554

Query: 176 LSGAIPN 182
            +    +
Sbjct: 555 FACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 82.8 bits (205), Expect = 4e-18
 Identities = 40/199 (20%), Positives = 68/199 (34%), Gaps = 20/199 (10%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEAL 62
            L    +L F S    N    + L S   + L  +  SF G  S         T  L+ L
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG----TTSLKYL 378

Query: 63  KLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNS-FGSLAFLVWLDLGKNRLFGTI 121
            L+ N +   +   ++  + L+ L   ++        S F SL  L++LD+         
Sbjct: 379 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437

Query: 122 PATLKNCTALESLDV--------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQ 167
                  ++LE L +                   +  L+L   +     PT F  L+ LQ
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 168 ILDIADNNLSGAIPNYINN 186
           +L+++ NN           
Sbjct: 498 VLNMSHNNFFSLDTFPYKC 516

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 32/175 (18%), Positives = 57/175 (32%), Gaps = 16/175 (9%)

Query: 17  SNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDC 76
             N   +   +  +   L LS N      S+           L+ L L+   +Q      
Sbjct: 16  ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFS----FPELQVLDLSRCEIQTIEDGA 71

Query: 77  WMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV 136
           + S  +L  L L+ N        +F  L+ L  L   +  L       + +   L+ L+ 
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN- 130

Query: 137 ERFSRMVVLNLRSNKFHG-PLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGM 190
                     +  N      LP  F +L  L+ LD++ N +       +  +  M
Sbjct: 131 ----------VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 76.2 bits (188), Expect = 5e-16
 Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 16/185 (8%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
            +   F +L    L    +  +        S+L  L L+ N                   
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG----LSS 101

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIG-NLPNSFGSLAFLVWLDLGKNRL 117
           L+ L   +  L           + LK L +++N      LP  F +L  L  LDL  N++
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 118 FGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                  L+    +  L++        L+L  N  +   P  F ++  L  L + +N  S
Sbjct: 162 QSIYCTDLRVLHQMPLLNLS-------LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDS 213

Query: 178 GAIPN 182
             +  
Sbjct: 214 LNVMK 218

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 36/189 (19%), Positives = 58/189 (30%), Gaps = 25/189 (13%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEAL 62
               T +   SL S  +  +     +    +L L +  F    +  L             
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL---------KSLK 328

Query: 63  KLNDNYLQGELPDCWMSDQNLKILKLSNNK--FIGNLPNSFGSLAFLVWLDLGKNRLFGT 120
           +L     +G      +   +L+ L LS N   F G    S      L +LDL  N +  T
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 387

Query: 121 IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTR-FCDLAILQILDIADNNLSGA 179
           + +       LE LD            + +          F  L  L  LDI+  +   A
Sbjct: 388 MSSNFLGLEQLEHLD-----------FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 180 IPNYINNVT 188
                N ++
Sbjct: 437 FNGIFNGLS 445

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 16/159 (10%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
                 L++  +   +       I    S+L  L ++ NSF  +      D   E + L 
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLT 473

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT 120
            L L+   L+   P  + S  +L++L +S+N F       +  L  L  LD   N +  +
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533

Query: 121 IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTR 159
               L++            S +  LNL  N F      +
Sbjct: 534 KKQELQHF----------PSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 5e-06
 Identities = 44/291 (15%), Positives = 81/291 (27%), Gaps = 44/291 (15%)

Query: 14  SLDSNNMSGLLPLIS----SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYL 69
           ++  N +            +NL +L LS N         L           +L L+ N +
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189

Query: 70  QGELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFGT------IP 122
               P  +  +  L  L L NN    N+       LA L    L                
Sbjct: 190 NFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 123 ATLKNCTALESLDV----------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAIL 166
           + L+    L   +                    + +   +L S          F      
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGW 306

Query: 167 QILDIADNNLSGAIPNYINNVT-----GMVTTNSFSRSAQQHLHVPLDVDVILMEKASVV 221
           Q L++ +          + ++           N+FS      L   LD+    +      
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF-LDLSRNGLSFKGCC 365

Query: 222 SREEVVEYN-EILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
           S+ +    + + L+L      S N +   +      L+  + L+F H+   
Sbjct: 366 SQSDFGTTSLKYLDL------SFNGV-ITMSSNFLGLEQLEHLDFQHSNLK 409

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.1 bits (211), Expect = 7e-19
 Identities = 37/180 (20%), Positives = 66/180 (36%), Gaps = 8/180 (4%)

Query: 14  SLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ 70
            L SN +    P        L  L L++     S++  LC ++  T  +  L L+++ L 
Sbjct: 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTS-IRNLSLSNSQLS 235

Query: 71  GELPD--CWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNC 128
                    +   NL +L LS N       +SF  L  L +  L  N +      +L   
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL 295

Query: 129 TALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT 188
             +  L+++R       ++            F  L  L+ L++ DN++ G   N    + 
Sbjct: 296 FNVRYLNLKR--SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.7 bits (205), Expect = 5e-18
 Identities = 35/193 (18%), Positives = 67/193 (34%), Gaps = 17/193 (8%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLIS---SNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
                 L   +++ N++ G+   +     NL YL LS++                   L 
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFG 119
            L L  N +     D +    +L++L L  N+    L    +  L  +  + L  N+   
Sbjct: 385 ILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ 444

Query: 120 TIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG--PLPTRFCDLAILQILDIADNNLS 177
               +     +L+            L LR          P+ F  L  L ILD+++NN++
Sbjct: 445 LTRNSFALVPSLQ-----------RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA 493

Query: 178 GAIPNYINNVTGM 190
               + +  +  +
Sbjct: 494 NINDDMLEGLEKL 506

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.0 bits (203), Expect = 8e-18
 Identities = 41/211 (19%), Positives = 66/211 (31%), Gaps = 38/211 (18%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLP-----LISSNLVYLGLSDNSFLGSISHFLCDKINETK 57
             T    L   SL ++ +S         L  +NL  L LS N+     +           
Sbjct: 220 ANTSIRNL---SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW----LP 272

Query: 58  RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNL---------PNSFGSLAFLV 108
           +LE   L  N +Q           N++ L L  +    ++           SF  L  L 
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 109 WLDLGKNRLFGTIPATLKNCTALESLDVER-----------------FSRMVVLNLRSNK 151
            L++  N + G           L+ L +                    S + +LNL  NK
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 152 FHGPLPTRFCDLAILQILDIADNNLSGAIPN 182
                   F  L  L++LD+  N +   +  
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 7e-17
 Identities = 44/207 (21%), Positives = 74/207 (35%), Gaps = 29/207 (14%)

Query: 8   TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKL 64
           + L   +L  N +S +         +L  L L  N     ++     +    + +  + L
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG---QEWRGLENIFEIYL 437

Query: 65  NDNYLQGELPDCWMSDQNLKILKLSNNKF--IGNLPNSFGSLAFLVWLDLGKNRLFGTIP 122
           + N       + +    +L+ L L       + + P+ F  L  L  LDL  N +     
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497

Query: 123 ATLKNCTALESLD---------------------VERFSRMVVLNLRSNKFHGPLPTRFC 161
             L+    LE LD                     ++  S + +LNL SN F       F 
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

Query: 162 DLAILQILDIADNNLSGAIPNYINNVT 188
           DL  L+I+D+  NNL+    +  NN  
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQV 584

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 39/196 (19%), Positives = 58/196 (29%), Gaps = 25/196 (12%)

Query: 3   NLTKFTQLLFRS-----LDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKIN 54
            LT+    L  +     L  N +  L        S L  L +  N+              
Sbjct: 15  KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK--- 71

Query: 55  ETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGK 114
               L+ L L  N L       +    NL  L L +N       N F     L+ LDL  
Sbjct: 72  -LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130

Query: 115 NRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG--PLPTRFCDLAILQILDIA 172
           N L  T   T      L+            L L +NK              + L+ L+++
Sbjct: 131 NGLSSTKLGTQVQLENLQ-----------ELLLSNNKIQALKSEELDIFANSSLKKLELS 179

Query: 173 DNNLSGAIPNYINNVT 188
            N +    P   + + 
Sbjct: 180 SNQIKEFSPGCFHAIG 195

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 42/193 (21%), Positives = 58/193 (30%), Gaps = 29/193 (15%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLIS-----SNLVYLGLSDNSFLGSISHFLCDKINETKR 58
                 L    L    +  +    S      NL  L LS+N+        L       ++
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG----LEK 505

Query: 59  LEALKLNDNYLQ--------GELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWL 110
           LE L L  N L         G          +L IL L +N F       F  L  L  +
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565

Query: 111 DLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCD-LAILQIL 169
           DLG N L     +   N  +L+SL+           L+ N         F      L  L
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLN-----------LQKNLITSVEKKVFGPAFRNLTEL 614

Query: 170 DIADNNLSGAIPN 182
           D+  N       +
Sbjct: 615 DMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 41/186 (22%), Positives = 63/186 (33%), Gaps = 16/186 (8%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
            N T+++QL    +  N +S L P +      L  L L  N                   
Sbjct: 43  ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF----CTN 98

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
           L  L L  N +Q    + ++  +NL  L LS+N        +   L  L  L L  N++ 
Sbjct: 99  LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQ 158

Query: 119 GTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSG 178
                 L    A  SL          L L SN+     P  F  +  L  L + +  L  
Sbjct: 159 ALKSEELDIF-ANSSL--------KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGP 209

Query: 179 AIPNYI 184
           ++   +
Sbjct: 210 SLTEKL 215

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 16/146 (10%)

Query: 56  TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKN 115
           T   E    +   L  ++PD   +  N+ +L L++N+       +F   + L  LD+G N
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59

Query: 116 RLFGTIPATLKNCTALESLDVER-------------FSRMVVLNLRSNKFHGPLPTRFCD 162
            +    P   +    L+ L+++               + +  L+L SN         F  
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119

Query: 163 LAILQILDIADNNLSGAIPNYINNVT 188
              L  LD++ N LS         + 
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLE 145

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 11/121 (9%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETK 57
           +  L   + L   +L+SN    +   +      L  + L  N+     +    ++     
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ----V 584

Query: 58  RLEALKLNDNYLQGELPD-CWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR 116
            L++L L  N +          + +NL  L +  N F     +      F+ W++     
Sbjct: 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES---IAWFVNWINETHTN 641

Query: 117 L 117
           +
Sbjct: 642 I 642

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.7 bits (197), Expect = 4e-17
 Identities = 24/203 (11%), Positives = 63/203 (31%), Gaps = 35/203 (17%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLP---LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
              F+ L+   ++S+     +     I+     +G   N+ +  +S  +        +L 
Sbjct: 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-ITFVSKAVMR----LTKLR 209

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT 120
              + ++    E        +  +       +        + +L  L  +++        
Sbjct: 210 QFYMGNSPFVAENIC-----EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264

Query: 121 IPATLKNCTALESLDV---------------------ERFSRMVVLNLRSNKF-HGPLPT 158
           +P  LK    ++ ++V                         ++ ++ +  N     P+ T
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324

Query: 159 RFCDLAILQILDIADNNLSGAIP 181
               +  L +L+   N L G +P
Sbjct: 325 SLQKMKKLGMLECLYNQLEGKLP 347

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 79.3 bits (196), Expect = 5e-17
 Identities = 43/288 (14%), Positives = 75/288 (26%), Gaps = 73/288 (25%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
           P      +L   +L  N ++ +       +  +  L  + N  L  I +           
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFD--AKSVSV 403

Query: 59  LEALKLNDNYLQG-------ELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLD 111
           + A+  + N +          L        N+  + LSNN+        F + + L  ++
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 112 LGKNRL-------FGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG-PLPTRFCDL 163
           L  N L               KN   L S+D           LR NK        R   L
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSID-----------LRFNKLTKLSDDFRATTL 512

Query: 164 AILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSR 223
             L  +D++ N+ S   P    N + +                                 
Sbjct: 513 PYLVGIDLSYNSFSK-FPTQPLNSSTL--------------------------------- 538

Query: 224 EEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
                  +   +        N  L+  P  +    +   L    N   
Sbjct: 539 -------KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 78.9 bits (195), Expect = 7e-17
 Identities = 23/188 (12%), Positives = 56/188 (29%), Gaps = 14/188 (7%)

Query: 14  SLDSNNMSGLLP-LIS--SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ 70
           SL+    SG +P  I   + L  L L  +    +   F    I+     E  +    + Q
Sbjct: 87  SLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQ 146

Query: 71  GELPDCWMSDQ--NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNC 128
               D    +   +L    ++++    ++  S         +    N +   +   +   
Sbjct: 147 KTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRL 205

Query: 129 TALESLD--------VERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
           T L                      N    + +     ++ +L  L  +++ +      +
Sbjct: 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265

Query: 181 PNYINNVT 188
           P ++  + 
Sbjct: 266 PTFLKALP 273

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 21/183 (11%)

Query: 12  FRSLDSNNMSGLLPLIS--SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYL 69
             S+D  N   L P      N+  + LS+N              +    L ++ L  N L
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL----FSTGSPLSSINLMGNML 469

Query: 70  QG-------ELPDCWMSDQNLKILKLSNNKFIGNLPN-SFGSLAFLVWLDLGKNRLFGTI 121
                    +  + + +   L  + L  NK      +    +L +LV +DL  N      
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKF 528

Query: 122 PATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIP 181
           P    N + L+   +         + + N+     P        L  L I  N++   + 
Sbjct: 529 PTQPLNSSTLKGFGIRN-----QRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VN 582

Query: 182 NYI 184
             I
Sbjct: 583 EKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 75.8 bits (187), Expect = 8e-16
 Identities = 39/207 (18%), Positives = 61/207 (29%), Gaps = 30/207 (14%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINET-- 56
           P   K   +   +L +N +S     +    S L  + L  N  L  I        NE   
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFK 485

Query: 57  --KRLEALKLNDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLG 113
               L ++ L  N L     D   +    L  + LS N F    P    + + L    + 
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544

Query: 114 ------KNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQ 167
                  NR     P  +  C +L  L            + SN     +  +      + 
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQ-----------IGSNDIRK-VNEKI--TPNIS 590

Query: 168 ILDIADNNLSGAIPNYINNVTGMVTTN 194
           +LDI DN       +Y+          
Sbjct: 591 VLDIKDNPNISIDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 28/215 (13%), Positives = 67/215 (31%), Gaps = 33/215 (15%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPL-IS--SNLVYLGLSDNSFLG----SISHFLCDKINE 55
           NL   T +    + +      LP  +     +  + ++ N  +                 
Sbjct: 247 NLKDLTDV---EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303

Query: 56  TKRLEALKLNDNYLQ-GELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGK 114
            ++++ + +  N L+   +       + L +L+   N+  G    +FGS   L  L+L  
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAY 362

Query: 115 NRLFGTIPATLKNCTALESLDVE--------------RFSRMVVLNLRSNKFHG------ 154
           N++             +E+L                   S M  ++   N+         
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422

Query: 155 -PLPTRFCDLAILQILDIADNNLSGAIPNYINNVT 188
            PL         +  +++++N +S       +  +
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 24/197 (12%), Positives = 52/197 (26%), Gaps = 14/197 (7%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLIS----SNLVYLGLSDNSFLGSISHFLCDKINET- 56
             + + T+L   +L S+       L      S  +         +     F+     E  
Sbjct: 99  DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 57  KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR 116
             L    +N +  Q  +            +   +N  I  +  +   L  L    +G + 
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGNSP 217

Query: 117 LFGTIPATLKNCTALESL--------DVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI 168
                          E            +    +  + + +      LPT    L  +Q+
Sbjct: 218 FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277

Query: 169 LDIADNNLSGAIPNYIN 185
           +++A N          +
Sbjct: 278 INVACNRGISGEQLKDD 294

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 30/199 (15%), Positives = 65/199 (32%), Gaps = 30/199 (15%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLIS----SNLVYLGLSDNSFLGSISHFLCDKINETK 57
            +     ++    +  NN+       S      L  L    N   G +            
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-----PAFGSEI 353

Query: 58  RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSF--GSLAFLVWLDLGKN 115
           +L +L L  N +     +     + ++ L  ++NK +  +PN F   S++ +  +D   N
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYN 412

Query: 116 RL-------FGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI 168
            +       F  +  T      + S++           L +N+        F   + L  
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSIN-----------LSNNQISKFPKELFSTGSPLSS 461

Query: 169 LDIADNNLSGAIPNYINNV 187
           +++  N L+    N + + 
Sbjct: 462 INLMGNMLTEIPKNSLKDE 480

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 3e-11
 Identities = 22/174 (12%), Positives = 46/174 (26%), Gaps = 26/174 (14%)

Query: 12  FRSLDSNNMSGLLPLIS--SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYL 69
              +  N++            L  + L  N        F    +     L  + L+ N  
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL---PYLVGIDLSYNSF 525

Query: 70  QGELPDCWMSDQNLKILKLSN------NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA 123
               P   ++   LK   + N      N+ +   P        L  L +G N +   +  
Sbjct: 526 SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583

Query: 124 TLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
            +                + VL+++ N       +  C      +  +  +   
Sbjct: 584 KI-------------TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 29/227 (12%), Positives = 66/227 (29%), Gaps = 25/227 (11%)

Query: 53  INETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGN----LPNSFGSLAFLV 108
           +N   R+  L L      G +PD       L++L L ++    N     P    +     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI 168
                +     T                  FS ++   + S+     +            
Sbjct: 137 QKQKMRMHYQKTFVDYDPRED---------FSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187

Query: 169 LDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSRE 224
           +    NN++  +   +  +T +       + F            + +           + 
Sbjct: 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ------YKT 240

Query: 225 EVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
           E ++++ + +L  V +      L  +P  ++ L   Q +N + N   
Sbjct: 241 EDLKWDNLKDLTDVEV-YNCPNLTKLPTFLKALPEMQLINVACNRGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 22/176 (12%), Positives = 37/176 (21%), Gaps = 36/176 (20%)

Query: 100 SFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGP---- 155
           S  S   +  L L      G +P  +   T LE L            L S+         
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLA-----------LGSHGEKVNERLF 124

Query: 156 LPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILM 215
            P         +       +      +Y               S  Q   +         
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS------ 178

Query: 216 EKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
                            + L    I   ++ +  V   V  L   +     ++ F 
Sbjct: 179 ---------------SRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV 219

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.3 bits (185), Expect = 2e-15
 Identities = 27/213 (12%), Positives = 61/213 (28%), Gaps = 42/213 (19%)

Query: 8   TQLLFRSLDSNNMSGLLPLIS----SNLVYLGLSDNSFLGSISH-FLCDKINETKRLEAL 62
            Q+       N +  +  + +      +  +  S N       +        +      +
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678

Query: 63  KLNDNYLQGELPDCWMSDQNLKILKLSNNKF-------IGNLPNSFGSLAFLVWLDLGKN 115
            L+ N +Q    + + +   +  + LSNN         +     ++ +   L  +DL  N
Sbjct: 679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

Query: 116 RL------------------------FGTIPATLKNCTALESLDVERFSRMVVLNLRSNK 151
           +L                        F + P    N + L++  +         +   N+
Sbjct: 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ-----RDAEGNR 793

Query: 152 FHGPLPTRFCDLAILQILDIADNNLSGAIPNYI 184
                PT       L  L I  N++   +   +
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.1 bits (182), Expect = 4e-15
 Identities = 41/286 (14%), Positives = 73/286 (25%), Gaps = 71/286 (24%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
                  +L    LD N +  +       +  +  LG S N  L  I +           
Sbjct: 589 EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIF--NAKSVYV 645

Query: 59  LEALKLNDNYLQGELPDCWMSDQ-----NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLG 113
           + ++  + N +  E  +   S       N   + LS N+        F + + +  + L 
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 114 KNRL-------FGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG-PLPTRFCDLAI 165
            N +               KN   L ++D           LR NK        R   L  
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTID-----------LRFNKLTSLSDDFRATTLPY 754

Query: 166 LQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREE 225
           L  +D++ N  S   P    N + +                                   
Sbjct: 755 LSNMDVSYNCFSS-FPTQPLNSSQL----------------------------------- 778

Query: 226 VVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
                +   +        N +L+  P  +    +   L    N   
Sbjct: 779 -----KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 70.3 bits (172), Expect = 7e-14
 Identities = 24/198 (12%), Positives = 57/198 (28%), Gaps = 28/198 (14%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEAL 62
              +           N    + P+   + + L  +    L +   F+   I    +L+ +
Sbjct: 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQII 453

Query: 63  KLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIP 122
              ++    +         + +       K   N   S+ +L  L  ++L        +P
Sbjct: 454 YFANSPFTYDNIA-----VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP 508

Query: 123 ATLKNCTALESLDV----------------------ERFSRMVVLNLRSNKFHG-PLPTR 159
             L +   L+SL++                      +   ++ +  +  N     P    
Sbjct: 509 DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568

Query: 160 FCDLAILQILDIADNNLS 177
              +  L +LD   N + 
Sbjct: 569 LQKMVKLGLLDCVHNKVR 586

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 1e-12
 Identities = 31/205 (15%), Positives = 60/205 (29%), Gaps = 28/205 (13%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEA 61
             + + T+L      ++  +     +                +         +  K L  
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWED--ANSDYAKQYENEE----LSWSNLKDLTD 495

Query: 62  LKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIG---------NLPNSFGSLAFLVWLDL 112
           ++L +     +LPD       L+ L ++ N+ I           L +   +   +    +
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555

Query: 113 GKNRLFG-TIPATLKNCTALESLDV-----------ERFSRMVVLNLRSNKFHGPLPTRF 160
           G N L      A+L+    L  LD                ++  L L  N+         
Sbjct: 556 GYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFC 615

Query: 161 CDLAILQILDIADNNLSGAIPNYIN 185
                ++ L  + N L   IPN  N
Sbjct: 616 AFTDQVEGLGFSHNKLKY-IPNIFN 639

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 5e-12
 Identities = 30/214 (14%), Positives = 60/214 (28%), Gaps = 33/214 (15%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLP-LIS--SNLVYLGLSDNSFLGSISHF-----LCDKIN 54
           NL   T +    L +      LP  +     L  L ++ N  + +         L D  +
Sbjct: 489 NLKDLTDV---ELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 55  ETKRLEALKLNDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLG 113
              +++   +  N L+       +     L +L   +NK       +FG+   L  L L 
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLD 603

Query: 114 KNRLFGTIPATLKNCTALESLDV--------------ERFSRMVVLNLRSNKFHGPLPTR 159
            N++             +E L                +    M  ++   NK        
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663

Query: 160 FCDLAI-----LQILDIADNNLSGAIPNYINNVT 188
            C +          + ++ N +           +
Sbjct: 664 SCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 30/196 (15%), Positives = 59/196 (30%), Gaps = 12/196 (6%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEA 61
             + + T+L   S  +++ +    L     +   +S+        H+    ++  +RL  
Sbjct: 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400

Query: 62  LKLNDNYLQGEL---PDCWMSDQNLKILKLSN-NKFIGNLPNSFGSLAFLVWLDLGKNRL 117
             L  + +       P    S  +LK  ++ N    I  +  +   L  L  +    +  
Sbjct: 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPF 460

Query: 118 FGTIPATLKNCTALESLDV--------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL 169
                A        +                 +  + L +      LP    DL  LQ L
Sbjct: 461 TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 170 DIADNNLSGAIPNYIN 185
           +IA N    A     +
Sbjct: 521 NIACNRGISAAQLKAD 536

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.8 bits (150), Expect = 5e-11
 Identities = 38/284 (13%), Positives = 85/284 (29%), Gaps = 56/284 (19%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLIS----SNLVYLGLSDNSFLGSISHFLCDKINETK 57
            +     ++    +  NN+       S      L  L    N  +  +  F         
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAF-----GTNV 595

Query: 58  RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPN--SFGSLAFLVWLDLGKN 115
           +L  LKL+ N ++    D       ++ L  S+NK +  +PN  +  S+  +  +D   N
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN 654

Query: 116 RLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNN 175
           ++ G+    +       S+D  +      + L  N+        F   + +  + +++N 
Sbjct: 655 KI-GSEGRNI-----SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708

Query: 176 LS-------GAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSRE 224
           ++               N   + T     N  +        +  D     +         
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-------LSDDFRATTLPYL------ 755

Query: 225 EVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN 268
                   +++      S N    + P +  N    ++    H 
Sbjct: 756 ------SNMDV------SYN-CFSSFPTQPLNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 46/264 (17%), Positives = 85/264 (32%), Gaps = 15/264 (5%)

Query: 11  LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ 70
           ++ +LD  N       I++ +  L  + N  L          ++   R+  L L     +
Sbjct: 277 IWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAK 336

Query: 71  GELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI-PATLKNCT 129
           G +PD       LK+L    +    +              +  K+R+        L    
Sbjct: 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ 396

Query: 130 ALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTG 189
            L   D+ +         R+ +           L   QI ++   N    I   I  +T 
Sbjct: 397 RLNLSDLLQ-----DAINRNPEMKPIKKDSRISLKDTQIGNL--TNRITFISKAIQRLTK 449

Query: 190 MVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIV--SRNDLL 247
           +     F+ S   + ++ +D +    + A     EE        NL  +T V       +
Sbjct: 450 L-QIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE----LSWSNLKDLTDVELYNCPNM 504

Query: 248 KNVPLEVRNLKATQSLNFSHNTFT 271
             +P  + +L   QSLN + N   
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGI 528

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 21/175 (12%), Positives = 50/175 (28%), Gaps = 28/175 (16%)

Query: 12  FRSLDSNNMSGLLPLISS--NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYL 69
             S+  N++        +   L  + L  N        F    +     L  + ++ N  
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL---PYLSNMDVSYNCF 765

Query: 70  QGELPDCWMSDQNLKILKL------SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA 123
               P   ++   LK   +        N+ +   P    +   L+ L +G N +   +  
Sbjct: 766 S-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823

Query: 124 TLKNCTALESLDVERFSRMVVLNLRSNKF-HGPLPTRFCDLAILQILDIADNNLS 177
            L               ++ +L++  N      + +  C      +  +  +   
Sbjct: 824 KL-------------TPQLYILDIADNPNISIDVTS-VCPYIEAGMYVLLYDKTQ 864

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.1 bits (180), Expect = 4e-15
 Identities = 42/192 (21%), Positives = 69/192 (35%), Gaps = 20/192 (10%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLIS--SNLVYLGLSDNSFLGSI-----SHFLCDKIN 54
             + +F  L   +L  N +  L   I+  + L  L +     L  +     S     +  
Sbjct: 121 DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180

Query: 55  ETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGK 114
               L++L+L    ++  LP    + QNLK LK+ N+  +  L  +   L  L  LDL  
Sbjct: 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRG 238

Query: 115 NRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADN 174
                  P        L+ L ++  S     NL +      LP     L  L+ LD+   
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCS-----NLLT------LPLDIHRLTQLEKLDLRGC 287

Query: 175 NLSGAIPNYINN 186
                +P+ I  
Sbjct: 288 VNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 7e-13
 Identities = 45/293 (15%), Positives = 75/293 (25%), Gaps = 59/293 (20%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLI----SSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
                      +     +     L+        V L L              D+      
Sbjct: 51  RQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL-----PQFPDQAFRLSH 105

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
           L+ + ++   L  ELPD       L+ L L+ N  +  LP S  SL  L  L +      
Sbjct: 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPEL 163

Query: 119 GTIPATLKNCTA---------LESLDV------------ERFSRMVVLNLRSNKFHGPLP 157
             +P  L +  A         L+SL +                 +  L +R++     L 
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LG 222

Query: 158 TRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEK 217
                L  L+ LD+         P        +        S    L  P          
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL--P---------- 270

Query: 218 ASVVSREEVVEYNEILNLVMVTI--VSRNDLLKNVPLEVRNLKATQSLNFSHN 268
                        +I  L  +    +     L  +P  +  L A   +    +
Sbjct: 271 ------------LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 34/154 (22%), Positives = 51/154 (33%), Gaps = 17/154 (11%)

Query: 29  SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88
            NL  L L            L   I   + L++LK+ ++ L   L         L+ L L
Sbjct: 183 VNLQSLRLEWTGI-----RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236

Query: 89  SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLR 148
                + N P  FG  A L  L L       T+P  +   T LE            L+LR
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE-----------KLDLR 285

Query: 149 SNKFHGPLPTRFCDLAILQILDIADNNLSGAIPN 182
                  LP+    L    I+ +  +  +    +
Sbjct: 286 GCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 27/180 (15%), Positives = 50/180 (27%), Gaps = 24/180 (13%)

Query: 13  RSLDSNNMSGLLPLISS--NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ 70
            +L     + L P             +D +   S       +   +   +        L+
Sbjct: 15  ENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAW-----RQANSNNPQIETRTGRALK 69

Query: 71  GELPDCW--MSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNC 128
               D     +      L+L +   +   P+    L+ L  + +    L   +P T++  
Sbjct: 70  -ATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQF 126

Query: 129 TALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT 188
             LE            L L  N     LP     L  L+ L I        +P  + +  
Sbjct: 127 AGLE-----------TLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTD 174

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.2 bits (175), Expect = 3e-14
 Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 25/207 (12%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLP-----LISSNLVYLGLSDNSFLGSISHFLCDKINET 56
                   L +  L  N +S         L +++L +L LS N  +   ++F+       
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG-----L 398

Query: 57  KRLEALKLNDNYLQGELP-DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKN 115
           + L+ L    + L+       ++S + L  L +S      +    F  L  L  L +  N
Sbjct: 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 116 RLFGTIPA-TLKNCTALESLDV-------------ERFSRMVVLNLRSNKFHGPLPTRFC 161
                  +    N T L  LD+             +   R+ +LN+  N       + + 
Sbjct: 459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN 518

Query: 162 DLAILQILDIADNNLSGAIPNYINNVT 188
            L  L  LD + N +  +     +   
Sbjct: 519 QLYSLSTLDCSFNRIETSKGILQHFPK 545

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 35/187 (18%), Positives = 55/187 (29%), Gaps = 21/187 (11%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
           + ++ K  +    S+    +     L    L  L L+ N    S              L 
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVAL------PSLS 353

Query: 61  ALKLNDNYLQ--GELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
            L L+ N L   G      +   +L+ L LS N  I  +  +F  L  L  LD   + L 
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLK 412

Query: 119 GTIPA-TLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                    +   L  LD           +            F  L  L  L +A N+  
Sbjct: 413 RVTEFSAFLSLEKLLYLD-----------ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 178 GAIPNYI 184
               + +
Sbjct: 462 DNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 16/182 (8%)

Query: 14  SLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGEL 73
                 +S +   I S+   + LS N      S+   +       L+ L L+   ++   
Sbjct: 17  QCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSN----FSELQWLDLSRCEIETIE 72

Query: 74  PDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALES 133
              W    +L  L L+ N      P SF  L  L  L   + +L       +     L+ 
Sbjct: 73  DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132

Query: 134 LDVERFSRMVVLNLRSNKFHG-PLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT 192
           L+           +  N  H   LP  F +L  L  +D++ N +     N +  +     
Sbjct: 133 LN-----------VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

Query: 193 TN 194
            N
Sbjct: 182 VN 183

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 25/132 (18%), Positives = 50/132 (37%), Gaps = 6/132 (4%)

Query: 8   TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKL 64
            +LL+  +   N       I    ++L  L ++ NSF  +    +      T  L  L L
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV---FANTTNLTFLDL 480

Query: 65  NDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPAT 124
           +   L+      + +   L++L +S+N  +    + +  L  L  LD   NR+  +    
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 125 LKNCTALESLDV 136
                +L   ++
Sbjct: 541 QHFPKSLAFFNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 8e-11
 Identities = 33/182 (18%), Positives = 57/182 (31%), Gaps = 16/182 (8%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
            + F++L +  L    +  +         +L  L L+ N              +    LE
Sbjct: 52  FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF----SGLTSLE 107

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIG-NLPNSFGSLAFLVWLDLGKNRLFG 119
            L   +  L             LK L +++N      LP  F +L  LV +DL  N +  
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 120 TIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGA 179
                L+       +++        L++  N         F  +  L  L +  N  S  
Sbjct: 168 ITVNDLQFLRENPQVNLS-------LDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSN 219

Query: 180 IP 181
           I 
Sbjct: 220 IM 221

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 43/287 (14%), Positives = 75/287 (26%), Gaps = 67/287 (23%)

Query: 3   NLTKFTQLLFR-SLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
            L +  Q+     +  N +  +         L  L L  N    +I       +      
Sbjct: 175 FLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 60  EALK---LNDNYLQGELPDCWMSDQNLKI--LKLSNNKFIGNLPNSFGSLAFLVWLDLGK 114
             +     ++  L+   P       ++ I   +L+      +    F  LA +  + L  
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 115 NRLFGTIPATLKNCTALESLDVER----------FSRMVVLNLRSNKFHGPLPTRFCDLA 164
             +       +      +SL + R             +  L L  NK           L 
Sbjct: 295 VSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFK--KVALP 350

Query: 165 ILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSRE 224
            L  LD++ N LS +               S+S      L                    
Sbjct: 351 SLSYLDLSRNALSFSGCC------------SYSDLGTNSL-------------------- 378

Query: 225 EVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
                   L+L      S N     +      L+  Q L+F H+T  
Sbjct: 379 ------RHLDL------SFNGA-IIMSANFMGLEELQHLDFQHSTLK 412

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 36/206 (17%), Positives = 71/206 (34%), Gaps = 23/206 (11%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLIS----SNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
            + F  L   S+  N     L         NL  L LS +      S     ++     L
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI--ETSDCCNLQLRNLSHL 378

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNS-FGSLAFLVWLDLGKNRLF 118
           ++L L+ N       + +     L++L L+  +       S F +L  L  L+L  + L 
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 119 GTIPATLKNCTALESLDV----------------ERFSRMVVLNLRSNKFHGPLPTRFCD 162
            +         AL+ L++                +   R+ +L L            F  
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 163 LAILQILDIADNNLSGAIPNYINNVT 188
           L ++  +D++ N L+ +    ++++ 
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLK 524

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 3e-13
 Identities = 39/201 (19%), Positives = 64/201 (31%), Gaps = 26/201 (12%)

Query: 5   TKFTQLLFRSLDSNNMSGLLPLI-----SSNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
           +    L   + +  +   + P +       ++  + L  + F    S+           L
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC----FSGL 280

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG 119
           + L L   +L  ELP   +    LK L LS NKF      S  +   L  L +  N    
Sbjct: 281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

Query: 120 TI-PATLKNCTALESLDVER------------FSRMV---VLNLRSNKFHGPLPTRFCDL 163
            +    L+N   L  LD+                 +     LNL  N+        F + 
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399

Query: 164 AILQILDIADNNLSGAIPNYI 184
             L++LD+A   L        
Sbjct: 400 PQLELLDLAFTRLKVKDAQSP 420

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 35/171 (20%), Positives = 55/171 (32%), Gaps = 23/171 (13%)

Query: 15  LDSNNMSGLLPLIS----SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ 70
           L    +              L  L LS +     +        +    L+ L L  N+  
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSL----LDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 71  GELPDCWMSDQN---LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKN 127
                   S Q    L+IL LS         ++F SL  +  +DL  NRL  +    L +
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 128 CTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSG 178
              +             LNL SN     LP+    L+  + +++  N L  
Sbjct: 523 LKGI------------YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 7e-13
 Identities = 28/169 (16%), Positives = 49/169 (28%), Gaps = 15/169 (8%)

Query: 14  SLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGEL 73
           + ++  ++ +   + ++   L  S N      +            L  L L    +    
Sbjct: 18  NCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSR----LINLTFLDLTRCQIYWIH 73

Query: 74  PDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALES 133
            D + S   L  L L+ N  I     +      L  L   +  +       L N   LES
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133

Query: 134 LDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPN 182
           L            L SN        +      L++LD  +N +      
Sbjct: 134 LY-----------LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 20/195 (10%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
             L   + L    L +N    L  +      +L +L +  N+    +       +   + 
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC---LENLEN 351

Query: 59  LEALKLNDNYLQ--GELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR 116
           L  L L+ + ++          +  +L+ L LS N+ +     +F     L  LDL   R
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 117 LFGTIP-ATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNN 175
           L      +  +N   L+ L+           L  +         F  L  LQ L++  N+
Sbjct: 412 LKVKDAQSPFQNLHLLKVLN-----------LSHSLLDISSEQLFDGLPALQHLNLQGNH 460

Query: 176 LSGAIPNYINNVTGM 190
                    N++  +
Sbjct: 461 FPKGNIQKTNSLQTL 475

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 31/180 (17%), Positives = 53/180 (29%), Gaps = 21/180 (11%)

Query: 15  LDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG 71
           L  N    L          L  L L+        +            L+ L L+ + L  
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP---FQNLHLLKVLNLSHSLLDI 439

Query: 72  ELPDCWMSDQNLKILKLSNNKFIGN---LPNSFGSLAFLVWLDLGKNRLFGTIPATLKNC 128
                +     L+ L L  N F        NS  +L  L  L L    L         + 
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 129 TALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT 188
             +  +D           L  N+           L  +  L++A N++S  +P+ +  ++
Sbjct: 500 KMMNHVD-----------LSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 44/281 (15%), Positives = 78/281 (27%), Gaps = 32/281 (11%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
            ++   L F  L    +  +          L  L L+ N  +      L       K L+
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG----PKALK 108

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT 120
            L      +         + + L+ L L +N               L  LD   N +   
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168

Query: 121 IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
               + +     +L          LNL  N   G +     D A+ Q L+         I
Sbjct: 169 SKEDMSSLQQATNLS---------LNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 181 PNYINNVT-GMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVT 239
              + N T   +   +F     + +   +   +  M           ++ +   N+   T
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS-----VESINLQKHYFFNISSNT 273

Query: 240 IVSRNDL---------LKNVPLEVRNLKATQSLNFSHNTFT 271
               + L         L  +P  +  L   + L  S N F 
Sbjct: 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFE 314

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 24/142 (16%), Positives = 42/142 (29%), Gaps = 12/142 (8%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
            +L    +L    L   ++S +          + ++ LS N    S    L         
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-- 527

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
              L L  N++   LP         + + L  N       N +    FL W      +L 
Sbjct: 528 ---LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY----FLEWYKENMQKLE 580

Query: 119 GTIPATLKNCTALESLDVERFS 140
            T     +N   L  + +   +
Sbjct: 581 DTEDTLCENPPLLRGVRLSDVT 602

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.6 bits (157), Expect = 5e-12
 Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 26/182 (14%)

Query: 7   FTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLND 66
              L +     N +S L  L + +L +L + +N         L +       LE +  ++
Sbjct: 99  PASLEYLDACDNRLSTLPELPA-SLKHLDVDNNQL-----TMLPELPA---LLEYINADN 149

Query: 67  NYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLK 126
           N L   LP+      +L++L + NN+ +  LP    SL     LD+  N L  ++PA   
Sbjct: 150 NQLT-MLPELP---TSLEVLSVRNNQ-LTFLPELPESL---EALDVSTNLL-ESLPAVPV 200

Query: 127 NCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINN 186
                E  ++           R N+    +P     L     + + DN LS  I   ++ 
Sbjct: 201 RNHHSEETEI-------FFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 187 VT 188
            T
Sbjct: 253 QT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 15/129 (11%)

Query: 14  SLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGEL 73
           + D+N ++ L  L + +L  L + +N  L  +           + LEAL ++ N L+  L
Sbjct: 146 NADNNQLTMLPELPT-SLEVLSVRNNQ-LTFLPELP-------ESLEALDVSTNLLE-SL 195

Query: 74  PDCWMSDQNLK----ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCT 129
           P   + + + +      +   N+ I ++P +  SL     + L  N L   I  +L   T
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254

Query: 130 ALESLDVER 138
           A       R
Sbjct: 255 AQPDYHGPR 263

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 4/128 (3%)

Query: 13  RSLD-SNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG 71
             L   NN    LP +  +L  L +S N  L S+        +  +     +  +N +  
Sbjct: 163 EVLSVRNNQLTFLPELPESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRIT- 220

Query: 72  ELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTAL 131
            +P+  +S      + L +N  + +      S         G    F             
Sbjct: 221 HIPENILSLDPTCTIILEDNP-LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRP 279

Query: 132 ESLDVERF 139
            +  V  +
Sbjct: 280 LADAVTAW 287

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.1 bits (146), Expect = 2e-10
 Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 24/179 (13%)

Query: 13  RSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE 72
            S+ +  +S L       L+ L L   +    I+           RL+ L+++       
Sbjct: 165 TSIPTEALSHL-----HGLIVLRLRHLN----INAIRDYSFKRLYRLKVLEISHWPYLDT 215

Query: 73  LPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFGTIPATLKNCTAL 131
           +    +   NL  L +++   +  +P  +   L +L +L+L  N +     + L     L
Sbjct: 216 MTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

Query: 132 ESLDVER-------------FSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
           + + +                + + VLN+  N+      + F  +  L+ L +  N L+
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 29/150 (19%), Positives = 49/150 (32%), Gaps = 17/150 (11%)

Query: 29  SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD-QNLKILK 87
           SNL  L +S+N     I   L     +   L++L++ DN L   +     S   +L+ L 
Sbjct: 104 SNLTKLDISENK----IVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLT 158

Query: 88  LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNL 147
           L           +   L  L+ L L    +      + K    L+ L+           +
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE-----------I 207

Query: 148 RSNKFHGPLPTRFCDLAILQILDIADNNLS 177
               +   +         L  L I   NL+
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.7 bits (132), Expect = 9e-09
 Identities = 39/192 (20%), Positives = 62/192 (32%), Gaps = 25/192 (13%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
            L+  T+L    +  N +  LL  +     NL  L + DN     + +      +    L
Sbjct: 102 GLSNLTKL---DISENKIVILLDYMFQDLYNLKSLEVGDND----LVYISHRAFSGLNSL 154

Query: 60  EALKLNDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
           E L L    L   +P   +S    L +L+L +         SF  L  L  L++      
Sbjct: 155 EQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213

Query: 119 GTIPATLKNCTALESLD-------------VERFSRMVVLNLRSNKFHGPLPTRFCDLAI 165
            T+         L SL              V     +  LNL  N       +   +L  
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273

Query: 166 LQILDIADNNLS 177
           LQ + +    L+
Sbjct: 274 LQEIQLVGGQLA 285

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 82  NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER--- 138
             ++L L  N+      + F S   L  L+L +N +    P    N   L +L +     
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 139 ----------FSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                      S +  L++  NK    L   F DL  L+ L++ DN+L 
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 22/155 (14%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLP---LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
             +  +L    +        +    L   NL  L ++  + L ++ +           L 
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRH---LVYLR 251

Query: 61  ALKLNDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLF 118
            L L+ N +   +    + +   L+ ++L   + +  +   +F  L +L  L++  N+L 
Sbjct: 252 FLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGNQL- 308

Query: 119 GTIPATLKNCTALESLDVERFSRMVVLNLRSNKFH 153
                     T LE         +  L L SN   
Sbjct: 309 ----------TTLEESVFHSVGNLETLILDSNPLA 333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 36/204 (17%), Positives = 64/204 (31%), Gaps = 29/204 (14%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLP-----LISSNLVYLGLSDNSFLGSISHFLCDKINE 55
              +   + L   +L++  ++G  P         +L  L L + S+    +     +   
Sbjct: 88  ALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147

Query: 56  TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNL-------PNSFGSLAFLV 108
              L+ L +   +      +       L  L LS+N  +G         P  F +L  L 
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLA 207

Query: 109 WLDLGKNRLFGTIPATLKNCTALESLDV--------------ERFSRMVVLNLRSNKFHG 154
             + G     G   A       L+ LD+              +  S++  LNL       
Sbjct: 208 LRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 155 PLPTRFCDLAILQILDIADNNLSG 178
                    A L +LD++ N L  
Sbjct: 268 VPK---GLPAKLSVLDLSYNRLDR 288

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 18/161 (11%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEAL 62
            L     +       N+++ +   ++  L  L L  N+ L   +  L         L  +
Sbjct: 200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDTAWLL-----NYPGLVEV 253

Query: 63  KLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIP 122
            L+ N L+  +   ++  Q L+ L +SNN+ +  L      +  L  LDL  N L   + 
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL-LHVE 311

Query: 123 ATLKNCTALESLDVER----------FSRMVVLNLRSNKFH 153
                   LE+L ++              +  L L  N + 
Sbjct: 312 RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 24/178 (13%)

Query: 14  SLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ 70
           +  ++ M  L   +      +  L L+D      I             ++ L +  N ++
Sbjct: 51  TFKNSTMRKLPAALLDSFRQVELLNLNDLQ----IEEIDTYAFAYAHTIQKLYMGFNAIR 106

Query: 71  GELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFGTIPATLKNCT 129
              P  + +   L +L L  N  + +LP   F +   L  L +  N L      T +  T
Sbjct: 107 YLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165

Query: 130 ALESLDVER----------FSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
           +L++L +               +   N+  N       +       ++ LD + N+++
Sbjct: 166 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 29/178 (16%), Positives = 60/178 (33%), Gaps = 17/178 (9%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
           +     F  +       +   G   +  +N   +   ++    ++       ++  +++E
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS----TMRKLPAALLDSFRQVE 72

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFG 119
            L LND  ++      +     ++ L +  N  I  LP + F ++  L  L L +N L  
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSS 131

Query: 120 TIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                  N   L             L++ +N         F     LQ L ++ N L+
Sbjct: 132 LPRGIFHNTPKLT-----------TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 43/198 (21%), Positives = 74/198 (37%), Gaps = 27/198 (13%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRLEAL 62
           L  FT+L   +L SN +   L L S S L  L L++N            ++     +E L
Sbjct: 54  LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV---------QELLVGPSIETL 104

Query: 63  KLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG-TI 121
              +N +   +       Q  K + L+NNK         G  + + +LDL  N +     
Sbjct: 105 HAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 122 PATLKNCTALESLDVER-----------FSRMVVLNLRSNKFHGPLPTRFCDLAILQILD 170
                +   LE L+++            F+++  L+L SNK    +   F   A +  + 
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220

Query: 171 IADNNLSGAIPNYINNVT 188
           + +N L   I   +    
Sbjct: 221 LRNNKLV-LIEKALRFSQ 237

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 31/180 (17%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETK 57
             N  ++       +  +++   L  +   + N+  L LS N     +S      +    
Sbjct: 6   KQNGNRYKIE---KVTDSSLKQALASLRQSAWNVKELDLSGN----PLSQISAADLAPFT 58

Query: 58  RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117
           +LE L L+ N L  E  D       L+ L L+NN               +  L    N  
Sbjct: 59  KLELLNLSSNVLY-ETLDLESL-STLRTLDLNNNYV-----QELLVGPSIETLHAANNN- 110

Query: 118 FGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                        +  +   R      + L +NK            + +Q LD+  N + 
Sbjct: 111 -------------ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 25/144 (17%), Positives = 48/144 (33%), Gaps = 13/144 (9%)

Query: 57  KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR 116
            R +  K+ D+ L+  L     S  N+K L LS N               L  L+L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 117 LFGTIPATLKNCTALESLDV--------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI 168
           L       L++ + L +LD+             +  L+  +N     +          + 
Sbjct: 70  L--YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR-VSCSR--GQGKKN 124

Query: 169 LDIADNNLSGAIPNYINNVTGMVT 192
           + +A+N ++          + +  
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQY 148

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 13  RSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE 72
            +++   ++         L +L L  N  +  +   +        +L+ L L+ N L   
Sbjct: 157 DTVNFAELAASSD----TLEHLNLQYNF-IYDVKGQVV-----FAKLKTLDLSSNKLA-F 205

Query: 73  LPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL-FGTIPATLKNCTAL 131
           +   + S   +  + L NNK +  +  +      L   DL  N    GT+         +
Sbjct: 206 MGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 132 ESLDVERFSRMVVLNLRSNKF 152
           +++  +   ++   N      
Sbjct: 265 QTVAKQTVKKLTGQNEEECTV 285

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 39/169 (23%), Positives = 61/169 (36%), Gaps = 24/169 (14%)

Query: 27  ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYL--QGELPDCWMSDQNLK 84
           I S+   L L  N     +        ++  +L  L L+ N L  +G          +LK
Sbjct: 26  IPSSATRLELESNK----LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81

Query: 85  ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA--TLKNCTALESLDVER---- 138
            L LS N  +  + ++F  L  L  LD   + L   +       +   L  LD+      
Sbjct: 82  YLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTR 139

Query: 139 ------FSRMV---VLNLRSNKF-HGPLPTRFCDLAILQILDIADNNLS 177
                 F+ +    VL +  N F    LP  F +L  L  LD++   L 
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 27/185 (14%)

Query: 9   QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNY 68
            L F+   S +  G      ++L YL LS N  +   S+FL       ++LE L    + 
Sbjct: 63  GLSFKGCCSQSDFGT-----TSLKYLDLSFNGVITMSSNFL-----GLEQLEHLDFQHSN 112

Query: 69  LQGELPDCWMSD-QNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFGTIPA-TL 125
           L+           +NL  L +S+           F  L+ L  L +  N           
Sbjct: 113 LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 126 KNCTALESLDVER-------------FSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIA 172
                L  LD+ +              S + VLN+  N F       +  L  LQ+LD +
Sbjct: 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231

Query: 173 DNNLS 177
            N++ 
Sbjct: 232 LNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 18/150 (12%)

Query: 8   TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKL 64
             L++  +   +       I    S+L  L ++ NSF  +      D   E + L  L L
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDL 182

Query: 65  NDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA 123
           +   L+ +L     +   +L++L +S+N F       +  L  L  LD   N +  T   
Sbjct: 183 SQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKK 240

Query: 124 TLKNCTALESLDVERFSRMVVLNLRSNKFH 153
                  L+       S +  LNL  N F 
Sbjct: 241 -----QELQHF----PSSLAFLNLTQNDFA 261

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 38/182 (20%), Positives = 69/182 (37%), Gaps = 17/182 (9%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLIS--SNLVYLGLSDNSFLGSISHFLCDKINETKRLEA 61
               T L +  L  N +  +         L +L    ++ L  +S F        + L  
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEF--SVFLSLRNLIY 425

Query: 62  LKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNL-PNSFGSLAFLVWLDLGKNRLFGT 120
           L ++  + +      +    +L++LK++ N F  N  P+ F  L  L +LDL + +L   
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485

Query: 121 IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI 180
            P    + ++L+           VLN+ SN+        F  L  LQ + +  N    + 
Sbjct: 486 SPTAFNSLSSLQ-----------VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534

Query: 181 PN 182
           P 
Sbjct: 535 PR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 16/177 (9%)

Query: 15  LDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP 74
               N   +   +  +   L LS N     + H           L+ L L+   +Q    
Sbjct: 14  CMELNFYKIPDNLPFSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 75  DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL 134
             + S  +L  L L+ N        +F  L+ L  L   +  L       + +   L+ L
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

Query: 135 DVERFSRMVVLNLRSNKF-HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGM 190
           +           +  N      LP  F +L  L+ LD++ N +       +  +  M
Sbjct: 130 N-----------VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 36/183 (19%), Positives = 62/183 (33%), Gaps = 16/183 (8%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
              F +L    L    +  +        S+L  L L+ N     I        +    L+
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP----IQSLALGAFSGLSSLQ 103

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKF-IGNLPNSFGSLAFLVWLDLGKNRLFG 119
            L   +  L           + LK L +++N      LP  F +L  L  LDL  N++  
Sbjct: 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163

Query: 120 TIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGA 179
                L+    +  L++        L+L  N  +   P  F ++  L  L + +N  S  
Sbjct: 164 IYCTDLRVLHQMPLLNLS-------LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLN 215

Query: 180 IPN 182
           +  
Sbjct: 216 VMK 218

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.2 bits (128), Expect = 3e-08
 Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 25/172 (14%)

Query: 9   QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNY 68
            L F+   S +  G      ++L YL LS N         +       ++LE L    + 
Sbjct: 358 GLSFKGCCSQSDFGT-----TSLKYLDLSFNGV-----ITMSSNFLGLEQLEHLDFQHSN 407

Query: 69  LQGELPDCWMSD--QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA-TL 125
           L+ ++ +  +    +NL  L +S+          F  L+ L  L +  N           
Sbjct: 408 LK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 126 KNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                L  LD           L   +     PT F  L+ LQ+L++A N L 
Sbjct: 467 TELRNLTFLD-----------LSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 9/139 (6%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLIS----SNLVYLGLSDNSFLGSISHFLCDKINETK 57
            N     QL       +N+  +          NL+YL +S                N   
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH----TRVAFNGIFNGLS 445

Query: 58  RLEALKLNDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR 116
            LE LK+  N  Q        ++ +NL  L LS  +     P +F SL+ L  L++  N+
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505

Query: 117 LFGTIPATLKNCTALESLD 135
           L           T+L+ + 
Sbjct: 506 LKSVPDGIFDRLTSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 33/194 (17%), Positives = 61/194 (31%), Gaps = 25/194 (12%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDN--SFLGSISHFLCDKINETKR 58
           +  L     +L    +  N+          L  L + +   ++L      + D  N    
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
           + +  L    ++      +      + L+L N KF          L  L  L    N+  
Sbjct: 284 VSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQ---FPTLKLKSLKRLTFTSNKGG 338

Query: 119 GTIPATLKNCTALESLDVER---------------FSRMVVLNLRSNKFHGPLPTRFCDL 163
                +  +  +LE LD+ R                + +  L+L  N     + + F  L
Sbjct: 339 NAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395

Query: 164 AILQILDIADNNLS 177
             L+ LD   +NL 
Sbjct: 396 EQLEHLDFQHSNLK 409

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 16/156 (10%)

Query: 29  SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88
           +NL +L LS N         L           +L L+ N +   +      +  L  L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTL 207

Query: 89  SNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNL 147
            NN    N+       LA L    L             +N   LE  D      +  L +
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGE--------FRNEGNLEKFDKSALEGLCNLTI 259

Query: 148 RSNK------FHGPLPTRFCDLAILQILDIADNNLS 177
              +      +   +   F  L  +    +    + 
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 47/179 (26%), Positives = 66/179 (36%), Gaps = 21/179 (11%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
                 L    L SN ++ +        + L  L LSDN+ L S+        +   RL 
Sbjct: 52  FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP---ATFHGLGRLH 108

Query: 61  ALKLNDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLF 118
            L L+   LQ EL          L+ L L +N  +  LP ++F  L  L  L L  NR+ 
Sbjct: 109 TLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 119 GTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                  +   +L+ L            L  N+     P  F DL  L  L +  NNLS
Sbjct: 167 SVPERAFRGLHSLDRLL-----------LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 28/111 (25%), Positives = 36/111 (32%), Gaps = 16/111 (14%)

Query: 82  NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA-TLKNCTALESLDVER-- 138
             + + L  N+       SF +   L  L L  N L   I A        LE LD+    
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNA 91

Query: 139 ------------FSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                         R+  L+L         P  F  LA LQ L + DN L 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 40/192 (20%), Positives = 77/192 (40%), Gaps = 24/192 (12%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
             L+  T L + ++  + +  + P+ + ++L  L L+ N  +  IS            L 
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ-IEDISPL-----ASLTSLH 202

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT 120
                 N +    P   M+   L  LK+ NNK      +   +L+ L WL++G N++  +
Sbjct: 203 YFTAYVNQITDITPVANMT--RLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQI--S 256

Query: 121 IPATLKNCTALESLDVER-----------FSRMVVLNLRSNKFHGPLPTRFCDLAILQIL 169
               +K+ T L+ L+V              S++  L L +N+           L  L  L
Sbjct: 257 DINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316

Query: 170 DIADNNLSGAIP 181
            ++ N+++   P
Sbjct: 317 FLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 39/200 (19%), Positives = 81/200 (40%), Gaps = 27/200 (13%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLIS--SNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
             L   T++   +L +N+    L  +S  + L YL ++++  +  ++            L
Sbjct: 126 SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPI-----ANLTDL 179

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG 119
            +L LN N ++   P   ++  +L       N+ I ++     ++  L  L +G N++  
Sbjct: 180 YSLSLNYNQIEDISPLASLT--SLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKITD 235

Query: 120 TIPATLKNCTALESLD-----------VERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI 168
             P  L N + L  L+           V+  +++ +LN+ SN+          +L+ L  
Sbjct: 236 LSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISV--LNNLSQLNS 291

Query: 169 LDIADNNLSGAIPNYINNVT 188
           L + +N L       I  +T
Sbjct: 292 LFLNNNQLGNEDMEVIGGLT 311

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 38/191 (19%), Positives = 78/191 (40%), Gaps = 27/191 (14%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
           +  L+   +L    + +N ++ +  L + +NL  L L+++    +IS      +    ++
Sbjct: 81  ISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNED----NISDI--SPLANLTKM 134

Query: 60  EALKLNDNYLQGELPD-CWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
            +L L  N+   +L     M+   L  L ++ +K + ++     +L  L  L L  N++ 
Sbjct: 135 YSLNLGANHNLSDLSPLSNMT--GLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIE 190

Query: 119 GTIPATLKNCTALESLDV-----------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQ 167
              P  L + T+L                   +R+  L + +NK     P    +L+ L 
Sbjct: 191 DISP--LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--LANLSQLT 246

Query: 168 ILDIADNNLSG 178
            L+I  N +S 
Sbjct: 247 WLEIGTNQISD 257

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.5 bits (127), Expect = 3e-08
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 24/178 (13%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
           +  L   T L + +   N ++ + P+ + + L  L + +N             +    +L
Sbjct: 192 ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP------LANLSQL 245

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG 119
             L++  N +     +       LK+L + +N+ I ++     +L+ L  L L  N+L  
Sbjct: 246 TWLEIGTNQISD--INAVKDLTKLKMLNVGSNQ-ISDISV-LNNLSQLNSLFLNNNQLGN 301

Query: 120 TIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                +   T L +L            L  N      P     L+ +   D A+  + 
Sbjct: 302 EDMEVIGGLTNLTTLF-----------LSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 19/125 (15%)

Query: 57  KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR 116
                  L    +   +    +   ++  L ++  K + ++      L  L +L+L  N+
Sbjct: 22  AEGIRAVLQKASVTDVVTQEELE--SITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGNQ 77

Query: 117 LFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNL 176
           +    P  L N   L +L            + +NK          +L  L+ L + ++N+
Sbjct: 78  ITDISP--LSNLVKLTNLY-----------IGTNKITDISA--LQNLTNLRELYLNEDNI 122

Query: 177 SGAIP 181
           S   P
Sbjct: 123 SDISP 127

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 40/191 (20%), Positives = 66/191 (34%), Gaps = 23/191 (12%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
                 L    L  N++  +        ++L  L L DN  L  I            +L 
Sbjct: 95  FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPS---GAFEYLSKLR 150

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFG 119
            L L +N ++      +    +L  L L   K +  +   +F  L  L +L+LG   +  
Sbjct: 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-- 208

Query: 120 TIPATLKNCTALESLDVER----------FSRMV---VLNLRSNKFHGPLPTRFCDLAIL 166
                L     LE L++            F  +     L + +++        F  LA L
Sbjct: 209 KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 167 QILDIADNNLS 177
             L++A NNLS
Sbjct: 269 VELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 7e-07
 Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 15/127 (11%)

Query: 58  RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNL-PNSFGSLAFLVWLDLGKNR 116
               L L +N +Q    D +    +L++L+L  N  I  +   +F  LA L  L+L  N 
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW 134

Query: 117 LFGTIPA-TLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNN 175
           L   IP+   +  + L  L            LR+N         F  +  L  LD+ +  
Sbjct: 135 L-TVIPSGAFEYLSKLRELW-----------LRNNPIESIPSYAFNRVPSLMRLDLGELK 182

Query: 176 LSGAIPN 182
               I  
Sbjct: 183 KLEYISE 189

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 29  SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88
            NL YL L   + +  + +           LE L+++ N+     P  +    +LK L +
Sbjct: 196 FNLKYLNLGMCN-IKDMPNL-----TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 89  SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA-TLKNCTALESLD 135
            N++      N+F  LA LV L+L  N L  ++P         L  L 
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPHDLFTPLRYLVELH 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 46/215 (21%), Positives = 72/215 (33%), Gaps = 47/215 (21%)

Query: 3   NLTKFTQLL--FRSLD-SNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
            LT    L      L    N    LP++   L  L +SDN  L S+             L
Sbjct: 112 PLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ-LASLPALPS-------EL 163

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLV----------- 108
             L   +N L   LP        L+ L +S+N+ + +LP     L  L            
Sbjct: 164 CKLWAYNNQLT-SLPMLP---SGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPA 218

Query: 109 ------WLDLGKNRLFGTIPATLKNCTALESLDV---------ERFSRMVVLNLRSNKFH 153
                  L +  NRL  ++P        L+ L V            S ++ L++  N+  
Sbjct: 219 LPSGLKELIVSGNRL-TSLPVLPSE---LKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT 274

Query: 154 GPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT 188
             LP     L+    +++  N LS      +  +T
Sbjct: 275 R-LPESLIHLSSETTVNLEGNPLSERTLQALREIT 308

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 31/202 (15%), Positives = 63/202 (31%), Gaps = 38/202 (18%)

Query: 8   TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDN---SFLGSISH------------FLCDK 52
                 ++  + ++ L   + +++  L + DN   S                    L   
Sbjct: 40  NGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVL 99

Query: 53  INETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDL 112
                 L        +L             L  L +  N+ + +LP        L  L +
Sbjct: 100 PPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQ-LTSLPVLPPG---LQELSV 148

Query: 113 GKNRLFGTIPATLKNCTALESLDV------ERFSRMVVLNLRSNKFHGPLPTRFCDLAIL 166
             N+L  ++PA       L + +          S +  L++  N+    LPT   +   L
Sbjct: 149 SDNQL-ASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSE---L 203

Query: 167 QILDIADNNLSGAIPNYINNVT 188
             L   +N L+ ++P   + + 
Sbjct: 204 YKLWAYNNRLT-SLPALPSGLK 224

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 29/180 (16%), Positives = 60/180 (33%), Gaps = 21/180 (11%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEAL 62
           + T      F   +S+ +S L  + +  +  L +        +S          ++++ +
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL----LEKVKRI 315

Query: 63  KLNDNYLQGELPDCWMSDQNLKILKLSNNKF---IGNLPNSFGSLAFLVWLDLGKNRL-- 117
            + ++ +           ++L+ L LS N             G+   L  L L +N L  
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 118 FGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                  L     L SLD           +  N FH P+P        ++ L+++   + 
Sbjct: 376 MQKTGEILLTLKNLTSLD-----------ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 19/179 (10%)

Query: 14  SLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGEL 73
              S + + +   +++ +  L LS N     I++     +     L+ L L  + +    
Sbjct: 11  DGRSRSFTSIPSGLTAAMKSLDLSFN----KITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 74  PDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG-TIPATLKNCTALE 132
            D + S  +L+ L LS+N       + FG L+ L +L+L  N      + +   N T L+
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 133 SLDVERF--------------SRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
           +L +                 + +  L +++             +  +  L +  +  +
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 35/206 (16%), Positives = 71/206 (34%), Gaps = 35/206 (16%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLISS---NLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
            +   ++   +++++ +  +    S    +L +L LS+N  +                L+
Sbjct: 306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQ 364

Query: 61  ALKLNDNYLQGELPDCWMSDQ--NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL- 117
            L L+ N+L+       +     NL  L +S N     +P+S      + +L+L    + 
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIR 423

Query: 118 --FGTIPATLK--------------NCTALESLDVER-----------FSRMVVLNLRSN 150
                IP TL+                  L+ L + R           F  ++V+ +  N
Sbjct: 424 VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRN 483

Query: 151 KFHGPLPTRFCDLAILQILDIADNNL 176
           +        F  L  LQ + +  N  
Sbjct: 484 QLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 20/171 (11%), Positives = 50/171 (29%), Gaps = 4/171 (2%)

Query: 29  SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD-QNLKILK 87
           S+L YL L  N +    +  +         L+ L++ +     E+     +   +L  L+
Sbjct: 98  SSLKYLNLMGNPY---QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 88  LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNL 147
           +           S  S+  +  L L  +     +       +++  L++   +       
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214

Query: 148 RSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSR 198
                    P +        + D + N L   +   +          + + 
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 40/195 (20%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSF--LGSISHFLCDKINETKRLE 60
               F   +      N +  LL  I   L  +   D +   LG  +    D ++E  ++E
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILE-LSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT 120
            +                    ++ L +       +L   +  L  +  + +  +++F  
Sbjct: 285 TV-------------------TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 121 IPATLKNCTALESLDVER----------------FSRMVVLNLRSNKFH--GPLPTRFCD 162
             +  ++  +LE LD+                  +  +  L L  N              
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 163 LAILQILDIADNNLS 177
           L  L  LDI+ N   
Sbjct: 386 LKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 27/138 (19%)

Query: 29  SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL 88
            NL  L +S N+F     H + D     +++  L L+   ++  +  C    Q L++L +
Sbjct: 387 KNLTSLDISRNTF-----HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDV 438

Query: 89  SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------------ 136
           SNN    NL +    L  L  L + +N+L  T+P        L  + +            
Sbjct: 439 SNN----NLDSFSLFLPRLQELYISRNKL-KTLPDAS-LFPVLLVMKISRNQLKSVPDGI 492

Query: 137 -ERFSRMVVLNLRSNKFH 153
            +R + +  + L +N + 
Sbjct: 493 FDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 36/293 (12%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLIS----SNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
               T L    + +      +  I     ++L  L +   S    + ++    +   + +
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS----LRNYQSQSLKSIRDI 174

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL-- 117
             L L+ +     L        +++ L+L +        +          +     R   
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 118 -----FGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIA 172
                F  +   L+    L  ++ +  +   + +   ++          +   ++ L I 
Sbjct: 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIP 294

Query: 173 DNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVP----------LDVDVILMEKASVVS 222
              L     + + ++   V   +   S    +             LD+   LM +  + +
Sbjct: 295 QFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKN 353

Query: 223 REEVVEYN--EILNLVMVTIVSRNDL--LKNVPLEVRNLKATQSLNFSHNTFT 271
                 +   + L L      S+N L  ++     +  LK   SL+ S NTF 
Sbjct: 354 SACKGAWPSLQTLVL------SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 43/199 (21%), Positives = 75/199 (37%), Gaps = 26/199 (13%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
             L   T L   SL+ N +  +  L S +NL  L L++N             ++   +L 
Sbjct: 215 TPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP------LSGLTKLT 268

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT 120
            LKL  N +    P   ++   L  L+L+ N+      +   +L  L +L L  N +   
Sbjct: 269 ELKLGANQISNISPLAGLT--ALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI 324

Query: 121 IPATLKNCTALESLD-----------VERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL 169
            P  + + T L+ L            +   + +  L+   N+     P    +L  +  L
Sbjct: 325 SP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380

Query: 170 DIADNNLSGAIPNYINNVT 188
            + D   + A  NY  NV+
Sbjct: 381 GLNDQAWTNAPVNYKANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 44/189 (23%), Positives = 68/189 (35%), Gaps = 24/189 (12%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
           +  L+  T+L    L +N +S + PL   + L  L L++N             I+  K L
Sbjct: 258 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP------ISNLKNL 311

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG 119
             L L  N +    P   ++   L+ L   NNK      +S  +L  + WL  G N++  
Sbjct: 312 TYLTLYFNNISDISPVSSLT--KLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD 367

Query: 120 TIPATLKNCTALESLD----------VERFSRMVVLNLRSNKFHGPL-PTRFCDLAILQI 168
             P  L N T +  L           V   + + + N   N     + P    D      
Sbjct: 368 LTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE 425

Query: 169 LDIADNNLS 177
            DI  N  S
Sbjct: 426 PDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 41/212 (19%), Positives = 76/212 (35%), Gaps = 43/212 (20%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
           +  +     L   +  +N ++ + PL + + LV + +++N             +     L
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP------LANLTNL 114

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKF-----IGNLPN--------------S 100
             L L +N +    P   ++  NL  L+LS+N       +  L +               
Sbjct: 115 TGLTLFNNQITDIDPLKNLT--NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP 172

Query: 101 FGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER-----------FSRMVVLNLRS 149
             +L  L  LD+  N++  +  + L   T LESL                + +  L+L  
Sbjct: 173 LANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG 230

Query: 150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIP 181
           N+           L  L  LD+A+N +S   P
Sbjct: 231 NQLKDIGT--LASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 35/212 (16%), Positives = 69/212 (32%), Gaps = 43/212 (20%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
           +   T   + +   L   N++  +       +  L       + SI       +     L
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLG-IKSIDG-----VEYLNNL 70

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKF-----IGNLPN--------------- 99
             +  ++N L    P   ++   L  + ++NN+      + NL N               
Sbjct: 71  TQINFSNNQLTDITPLKNLT--KLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 128

Query: 100 SFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLD----------VERFSRMVVLNLRS 149
              +L  L  L+L  N +  +  + L   T+L+ L           +   + +  L++ S
Sbjct: 129 PLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186

Query: 150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIP 181
           NK           L  L+ L   +N +S   P
Sbjct: 187 NKVSDISV--LAKLTNLESLIATNNQISDITP 216

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 27/169 (15%), Positives = 58/169 (34%), Gaps = 23/169 (13%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
             ++    L + +L  NN+S + P+ S + L  L   +N  +  +S            + 
Sbjct: 303 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK-VSDVSSL-----ANLTNIN 356

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT 120
            L    N +    P   ++   +  L L++  +     N   +++    +      L   
Sbjct: 357 WLSAGHNQISDLTPLANLT--RITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL--I 412

Query: 121 IPATLKNCTALESLDVE------------RFSRMVVLNLRSNKFHGPLP 157
            PAT+ +  +    D+              FS+ V +   +  F G + 
Sbjct: 413 APATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 18/161 (11%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEAL 62
            L     +       N+++ +   ++  L  L L  N+ L   +  L         L  +
Sbjct: 206 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDTAWLL-----NYPGLVEV 259

Query: 63  KLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIP 122
            L+ N L+  +   ++  Q L+ L +SNN+ +  L      +  L  LDL  N L   + 
Sbjct: 260 DLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHL-LHVE 317

Query: 123 ATLKNCTALESLDVER----------FSRMVVLNLRSNKFH 153
                   LE+L ++              +  L L  N + 
Sbjct: 318 RNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 27/177 (15%), Positives = 58/177 (32%), Gaps = 15/177 (8%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
           +     F  +       +   G   +  +N   +   ++    ++       ++  +++E
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS----TMRKLPAALLDSFRQVE 78

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT 120
            L LND  ++      +     ++ L +  N      P+ F ++  L  L L +N L   
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL 138

Query: 121 IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                 N   L             L++ +N         F     LQ L ++ N L+
Sbjct: 139 PRGIFHNTPKLT-----------TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.5 bits (110), Expect = 4e-06
 Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 26/177 (14%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
           L  F Q+   +L+   +  +       +  +  L +  N+    I +           L 
Sbjct: 71  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA----IRYLPPHVFQNVPLLT 126

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT 120
            L L  N L       + +   L  L +SNN       ++F +   L  L L  NR    
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR---- 182

Query: 121 IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                     L  +D+     +   N+  N       +       ++ LD + N+++
Sbjct: 183 ----------LTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN 224

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 56.4 bits (136), Expect = 3e-09
 Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 25/180 (13%)

Query: 3   NLTKFTQLLFRSLDSNNMSGL-----LPLISSNLVYLGLSDNSFLGSISHFLCDKINETK 57
           +L     ++      +N+          L  S++ +L LS       +           K
Sbjct: 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF----VFSLNSRVFETLK 290

Query: 58  RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117
            L+ L L  N +     + +    NL++L LS N       ++F  L  + ++DL KN +
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

Query: 118 FGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                 T K    L++LD           LR N       T    +  +  + ++ N L 
Sbjct: 351 AIIQDQTFKFLEKLQTLD-----------LRDNAL-----TTIHFIPSIPDIFLSGNKLV 394

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 46/201 (22%), Positives = 71/201 (35%), Gaps = 25/201 (12%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLG-SISHFLCDKINETKRL 59
           +  +     +    L  N +  L P I+     + LS+N      I +FL         L
Sbjct: 374 LTTIHFIPSIPDIFLSGNKLVTL-PKINLTANLIHLSENRLENLDILYFLLR----VPHL 428

Query: 60  EALKLNDNYLQGELPDCWMSD-QNLKILKLSNNKF-----IGNLPNSFGSLAFLVWLDLG 113
           + L LN N       D   S+  +L+ L L  N            + F  L+ L  L L 
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488

Query: 114 KNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIAD 173
            N L    P    + TAL             L+L SN+              L+ILDI+ 
Sbjct: 489 HNYLNSLPPGVFSHLTALR-----------GLSLNSNRLTVLSHNDLPAN--LEILDISR 535

Query: 174 NNLSGAIPNYINNVTGMVTTN 194
           N L    P+   +++ +  T+
Sbjct: 536 NQLLAPNPDVFVSLSVLDITH 556

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 37/225 (16%), Positives = 69/225 (30%), Gaps = 33/225 (14%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKR 58
             L    +L    L  N +  +          L  L L       +I             
Sbjct: 21  QVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRN---LPN 74

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNL--PNSFGSLAFLVWLDLGKNR 116
           L  L L  + +    PD +    +L  L+L        +     F +L  L  LDL KN+
Sbjct: 75  LRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134

Query: 117 LFG-TIPATLKNCTALESLDVE---------------RFSRMVVLNLRSNKFHGPLPTRF 160
           +    +  +     +L+S+D                 +   +   +L +N  +  +   +
Sbjct: 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW 194

Query: 161 CDLA------ILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRS 199
                     +L+ILD++ N  +  I    +N        S   +
Sbjct: 195 GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 40/205 (19%), Positives = 63/205 (30%), Gaps = 39/205 (19%)

Query: 15  LDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG 71
           L    +  L   +     +L  L L+ N     I+    +       L+ L L+ N L  
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNK----INKIADEAFYGLDNLQVLNLSYNLLG- 327

Query: 72  ELPDCWMSD-QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL------------- 117
           EL          +  + L  N        +F  L  L  LDL  N L             
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387

Query: 118 -----FGTIPATLKNCT-------ALESLDVERF----SRMVVLNLRSNKFHGPLPTRFC 161
                  T+P               LE+LD+  F      + +L L  N+F      +  
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 162 -DLAILQILDIADNNLSGAIPNYIN 185
            +   L+ L + +N L  A    + 
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELC 472

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 44/185 (23%), Positives = 64/185 (34%), Gaps = 28/185 (15%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEAL 62
           NL   ++    +LD       +P    +L  L L+ N F            +E   LE L
Sbjct: 404 NLIHLSENRLENLDILYFLLRVP----HLQILILNQNRFSSCSGDQTP---SENPSLEQL 456

Query: 63  KLNDNYLQGELPDCWMSD-----QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117
            L +N LQ         D      +L++L L++N      P  F  L  L  L L  NRL
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

Query: 118 FGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                  L +     +L         +L++  N+   P P  F     L +LDI  N   
Sbjct: 517 -----TVLSHNDLPANL--------EILDISRNQLLAPNPDVF---VSLSVLDITHNKFI 560

Query: 178 GAIPN 182
                
Sbjct: 561 CECEL 565

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 48/306 (15%), Positives = 98/306 (32%), Gaps = 44/306 (14%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGL-----LPLISSNLVYLGLSDNSF--LGSISHFLCDKIN 54
           P+  K   L      SN +  +      PL    L +  L+ NS     S+    C    
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 55  ETKRLEALKLNDNYLQGELPDC------------WMSDQNLKILKLSNNKFIGNLPNSFG 102
               LE L ++ N    ++                +   ++       +       N+F 
Sbjct: 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261

Query: 103 SLA--FLVWLDLGKNRLFGTIPATLKNCTALESLDVER-------------FSRMVVLNL 147
            LA   +  LDL    +F       +    L+ L++                  + VLNL
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321

Query: 148 RSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVP 207
             N       + F  L  +  +D+  N+++         +  + T +    +A   +H  
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD-LRDNALTTIHFI 380

Query: 208 LDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEV--RNLKATQSLNF 265
             +  I +    +V+  ++     +++L         + L+N+ +      +   Q L  
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTANLIHL-------SENRLENLDILYFLLRVPHLQILIL 433

Query: 266 SHNTFT 271
           + N F+
Sbjct: 434 NQNRFS 439

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 27/196 (13%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRLEAL 62
           L  FT+L   +L SN +   L L S S L  L L++N            ++     +E L
Sbjct: 54  LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV---------QELLVGPSIETL 104

Query: 63  KLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG-TI 121
              +N +   +       Q  K + L+NNK         G  + + +LDL  N +     
Sbjct: 105 HAANNNIS-RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 122 PATLKNCTALESLDVER-----------FSRMVVLNLRSNKFHGPLPTRFCDLAILQILD 170
                +   LE L+++            F+++  L+L SNK    +   F   A +  + 
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWIS 220

Query: 171 IADNNLSGAIPNYINN 186
           + +N L   I   +  
Sbjct: 221 LRNNKLV-LIEKALRF 235

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 3e-08
 Identities = 30/164 (18%), Positives = 54/164 (32%), Gaps = 21/164 (12%)

Query: 24  LPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL 83
           +    +      ++D+    S+   L         ++ L L+ N L             L
Sbjct: 5   IKQNGNRYKIEKVTDS----SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 84  KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------- 136
           ++L LS+N  +        SL+ L  LDL  N +       L    ++E+L         
Sbjct: 61  ELLNLSSNV-LYETL-DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR 113

Query: 137 ---ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
               R      + L +NK            + +Q LD+  N + 
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 13/105 (12%)

Query: 73  LPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALE 132
           + +   +    KI K++++     L +   S   +  LDL  N L     A L   T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 133 SLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                      +LNL SN  +  L      L+ L+ LD+ +N + 
Sbjct: 62  -----------LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.7 bits (116), Expect = 7e-07
 Identities = 26/143 (18%), Positives = 49/143 (34%), Gaps = 13/143 (9%)

Query: 58  RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117
           R +  K+ D+ L+  L     S  N+K L LS N               L  L+L  N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 118 FGTIPATLKNCTALESLD--------VERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL 169
                  L++ + L +LD        +     +  L+  +N       +R       + +
Sbjct: 71  --YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG---KKNI 125

Query: 170 DIADNNLSGAIPNYINNVTGMVT 192
            +A+N ++          + +  
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQY 148

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 8e-06
 Identities = 21/142 (14%), Positives = 48/142 (33%), Gaps = 13/142 (9%)

Query: 12  FRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG 71
             +++   ++         L +L L  N  +  +   +        +L+ L L+ N L  
Sbjct: 156 IDTVNFAELAASSD----TLEHLNLQYNF-IYDVKGQVV-----FAKLKTLDLSSNKLA- 204

Query: 72  ELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL-FGTIPATLKNCTA 130
            +   + S   +  + L NNK +  +  +      L   DL  N    GT+         
Sbjct: 205 FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR 263

Query: 131 LESLDVERFSRMVVLNLRSNKF 152
           ++++  +   ++   N      
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTV 285

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 24/169 (14%), Positives = 60/169 (35%), Gaps = 12/169 (7%)

Query: 8   TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDN 67
            +L +  +   N++ +   +  +L  L L  N     I+      +     L  L L+ N
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTELHLDGNK----ITKVDAASLKGLNNLAKLGLSFN 226

Query: 68  YLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKN 127
            +         +  +L+ L L+NNK +  +P       ++  + L  N +     + + +
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNI-----SAIGS 280

Query: 128 CTALESLDVERFSRMVVLNLRSNKF-HGPLPTR-FCDLAILQILDIADN 174
                     + +    ++L SN   +  +    F  + +   + + + 
Sbjct: 281 NDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 28/191 (14%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEAL 62
            L K  +L    L  N +  L   +   L  L + +N     I+       N   ++  +
Sbjct: 98  PLVKLERL---YLSKNQLKELPEKMPKTLQELRVHENE----ITKVRKSVFNGLNQMIVV 150

Query: 63  KLNDNYLQ-GELPDCWMSD-QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT 120
           +L  N L+   + +      + L  +++++   I  +P   G    L  L L  N++   
Sbjct: 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ--GLPPSLTELHLDGNKI-TK 206

Query: 121 IPA-TLKNCTALESLDVER-------------FSRMVVLNLRSNKFHGPLPTRFCDLAIL 166
           + A +LK    L  L +                  +  L+L +NK    +P    D   +
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYI 265

Query: 167 QILDIADNNLS 177
           Q++ + +NN+S
Sbjct: 266 QVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 82  NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER--- 138
           +  +L L NNK        F +L  L  L L  N++    P        LE L + +   
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 139 -------FSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                     +  L +  N+      + F  L  + ++++  N L 
Sbjct: 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 26/179 (14%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
                 L    L +N +S + P        L  L LS N  L  +   +       K L+
Sbjct: 72  FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM------PKTLQ 124

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNL--PNSFGSLAFLVWLDLGKNRLF 118
            L++++N +       +     + +++L  N    +     +F  +  L ++ +    + 
Sbjct: 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI- 183

Query: 119 GTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
            TIP  L                +  L+L  NK           L  L  L ++ N++S
Sbjct: 184 TTIPQGL-------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 229

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 30/183 (16%), Positives = 56/183 (30%), Gaps = 20/183 (10%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLIS----SNLVYLGLSDNSFLGSISHFLCDKINETKR 58
            L+  T L   +L  N    L         + L  L + +      I       +     
Sbjct: 122 PLSSLTFL---NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL---TF 175

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
           LE L+++ + LQ   P    S QN+  L L   + I  L       + +  L+L    L 
Sbjct: 176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL- 234

Query: 119 GTIPATLKNCTALESLDVERFSRMVVL---NLRSNKFHGPLPTRFCDLAILQILDIADNN 175
                   + + L + +     +        +        +      ++ L  L+ + N 
Sbjct: 235 -----DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQ 288

Query: 176 LSG 178
           L  
Sbjct: 289 LKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 36/180 (20%), Positives = 62/180 (34%), Gaps = 20/180 (11%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
           L +   L    L SN ++ +         +L +L LS N  L ++S            L 
Sbjct: 72  LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKP---LSSLT 127

Query: 61  ALKLNDNYLQGELPDCWMSDQ-NLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLF 118
            L L  N  +        S    L+IL++ N      +    F  L FL  L++  + L 
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187

Query: 119 GTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSG 178
              P +LK+   +  L            L   +    L       + ++ L++ D +L  
Sbjct: 188 SYEPKSLKSIQNVSHLI-----------LHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 38/190 (20%), Positives = 71/190 (37%), Gaps = 27/190 (14%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEAL 62
            L K  +L    +  N++  + P + S+LV L + DN     I        +  + +  +
Sbjct: 100 PLRKLQKL---YISKNHLVEIPPNLPSSLVELRIHDN----RIRKVPKGVFSGLRNMNCI 152

Query: 63  KLNDNYLQ-GELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI 121
           ++  N L+             L  L++S  K  G   +   +   L  L L  N++   I
Sbjct: 153 EMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LNELHLDHNKI-QAI 208

Query: 122 PA-TLKNCTALESLDVER-------------FSRMVVLNLRSNKFHGPLPTRFCDLAILQ 167
               L   + L  L +                  +  L+L +NK    +P    DL +LQ
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQ 267

Query: 168 ILDIADNNLS 177
           ++ +  NN++
Sbjct: 268 VVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 26/168 (15%), Positives = 53/168 (31%), Gaps = 12/168 (7%)

Query: 9   QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNY 68
           +L +  +    ++G+   +   L  L L  N     I     + +    +L  L L  N 
Sbjct: 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNK----IQAIELEDLLRYSKLYRLGLGHNQ 228

Query: 69  LQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNC 128
           ++            L+ L L NNK +  +P     L  L  + L  N +       +   
Sbjct: 229 IRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNI-----TKVGVN 282

Query: 129 TALESLDVERFSRMVVLNLRSN--KFHGPLPTRFCDLAILQILDIADN 174
                    + +    ++L +N   +    P  F  +     +   + 
Sbjct: 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 10/106 (9%)

Query: 82  NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER--- 138
           +  +L L NN       + F  L  L  L L  N++             L+ L + +   
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 139 -------FSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                   S +V L +  N+        F  L  +  +++  N L 
Sbjct: 115 VEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 49/180 (27%), Positives = 71/180 (39%), Gaps = 21/180 (11%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLIS----SNLVYLGLSDNSFLGSISHFLCDKINETK 57
            +L  +T LL   L  NN+S L    +    +NL  L LS N  L  IS      +    
Sbjct: 35  QSLPSYTALLD--LSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPV---P 88

Query: 58  RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNR 116
            L  L L+ N+L       +   Q L++L L NN  I  +  N+F  +A L  L L +N+
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQ 147

Query: 117 LFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIA-DNN 175
           +       +K+   L  L         +L+L SNK      T    L       +   NN
Sbjct: 148 ISRFPVELIKDGNKLPKLM--------LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 36/200 (18%), Positives = 64/200 (32%), Gaps = 41/200 (20%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
                 L    L  N++  +        +NL  L L DN  L +I +          +L+
Sbjct: 84  FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPN---GAFVYLSKLK 139

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPN--------------------- 99
            L L +N ++      +    +L+ L L   K +  +                       
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199

Query: 100 --SFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLP 157
             +   L  L  LDL  N L    P + +    L+ L            +  ++      
Sbjct: 200 IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW-----------MIQSQIQVIER 248

Query: 158 TRFCDLAILQILDIADNNLS 177
             F +L  L  +++A NNL+
Sbjct: 249 NAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 9e-07
 Identities = 30/126 (23%), Positives = 49/126 (38%), Gaps = 13/126 (10%)

Query: 58  RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNR 116
               L L++N +Q    + +   ++L+IL+LS N  I  +   +F  LA L  L+L  NR
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNR 123

Query: 117 LFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNL 176
           L           + L+ L            LR+N         F  +  L+ LD+ +   
Sbjct: 124 LTTIPNGAFVYLSKLKELW-----------LRNNPIESIPSYAFNRIPSLRRLDLGELKR 172

Query: 177 SGAIPN 182
              I  
Sbjct: 173 LSYISE 178

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 40/190 (21%), Positives = 72/190 (37%), Gaps = 28/190 (14%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
           +  +     +    L+ N ++ + PL +  NL +L L +N  +  +S      + + K+L
Sbjct: 58  VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK-IKDLSS-----LKDLKKL 111

Query: 60  EALKLNDNYLQ--GELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117
           ++L L  N +     L         L+ L L NNK I ++      L  L  L L  N++
Sbjct: 112 KSLSLEHNGISDINGLVHL----PQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDNQI 165

Query: 118 FGTIPATLKNCTALESLDV-----------ERFSRMVVLNLRSNKFHGPLPTRFCDLAIL 166
              I   L   T L++L +                + VL L S +          +L + 
Sbjct: 166 -SDIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

Query: 167 QILDIADNNL 176
             +   D +L
Sbjct: 224 NTVKNTDGSL 233

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 17/137 (12%)

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
              L L++N L        M    L  L L   + +  L    G+L  L  LDL  N+L 
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQ-VDGTLPVLGTLDLSHNQL- 89

Query: 119 GTIPATLKNCTALESLDVER----------FSRMV---VLNLRSNKFHGPLPTRFCDLAI 165
            ++P   +   AL  LDV               +     L L+ N+     P        
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149

Query: 166 LQILDIADNNLSGAIPN 182
           L+ L +A+NNL+  +P 
Sbjct: 150 LEKLSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 14/96 (14%)

Query: 82  NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSR 141
           +  IL LS N        +      L  L+L +  L   +         L +LD      
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQV-DGTLPVLGTLD------ 83

Query: 142 MVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                L  N+    LP     L  L +LD++ N L+
Sbjct: 84  -----LSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 40/183 (21%), Positives = 67/183 (36%), Gaps = 32/183 (17%)

Query: 5   TKFTQLLFRSLDSNNMSGLLPLISSNLV---YLGLSDNSFLGSISHFLCDKINETKRLEA 61
             F+ +  ++   +    +  L  S +    +L  S+N  L       C  + E + L  
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVFENCGHLTELETLI- 354

Query: 62  LKLNDNYLQGELPDCWMSDQ--NLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRL- 117
             L  N L+       M+ Q  +L+ L +S N    +           L+ L++  N L 
Sbjct: 355 --LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 118 ---FGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADN 174
              F  +P  +K                 VL+L SNK    +P +   L  LQ L++A N
Sbjct: 413 DTIFRCLPPRIK-----------------VLDLHSNKIKS-IPKQVVKLEALQELNVASN 454

Query: 175 NLS 177
            L 
Sbjct: 455 QLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 30/189 (15%), Positives = 58/189 (30%), Gaps = 20/189 (10%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLS-------DNSFLGSISHFLCDKI 53
           +  L   T + + S+ +  + G L     +     L         +   G    ++ +  
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIF 299

Query: 54  NETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLG 113
           +    +       +  +     C         L  SNN     +  + G L  L  L L 
Sbjct: 300 SN---MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356

Query: 114 KNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCD-LAILQILDIA 172
            N+L   +    +  T ++SL          L++  N          C     L  L+++
Sbjct: 357 MNQL-KELSKIAEMTTQMKSLQ--------QLDISQNSVSYDEKKGDCSWTKSLLSLNMS 407

Query: 173 DNNLSGAIP 181
            N L+  I 
Sbjct: 408 SNILTDTIF 416

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 26/214 (12%)

Query: 82  NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----- 136
              IL +S N       +   SL+ L  L +  NR+     +  K    LE LD+     
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 137 -----ERFSRMVVLNLRSNKFHG-PLPTRFCDLAILQILDIADNNLSGAIPNYI------ 184
                     +  L+L  N F   P+   F +++ L+ L ++  +L  +    I      
Sbjct: 82  VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNIS 141

Query: 185 -------NNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVM 237
                                   + LH+    +        +    + V   E+ N+  
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF--HFILDVSVKTVANLELSNIKC 199

Query: 238 VTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
           V   ++     ++  +++      +L  ++   T
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 35/180 (19%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLV---YLGLSDNSFLGSISHFLCDKINETK 57
           M   +K +  L     +N ++  +     +L     L L  N  L  +S  + +   + K
Sbjct: 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSK-IAEMTTQMK 374

Query: 58  RLEALKLNDNYLQGELPDC-WMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR 116
            L+ L ++ N +  +         ++L  L +S+N     +         +  LDL  N+
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNK 432

Query: 117 LFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNL 176
           +  +IP  +    AL+            LN+ SN+        F  L  LQ + +  N  
Sbjct: 433 IK-SIPKQVVKLEALQ-----------ELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 27/191 (14%), Positives = 63/191 (32%), Gaps = 32/191 (16%)

Query: 5   TKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKL 64
           + F   L   L  ++ + +     ++L Y+ L++ + +  ++      I     ++ L +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANIN-VTDLTG-----IEYAHNIKDLTI 73

Query: 65  NDNYLQ-----GELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG 119
           N+ +         L        NL+ L++       +   +   L  L  LD+  +    
Sbjct: 74  NNIHATNYNPISGLS-------NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 120 TIPATLKNCTALESLDVER------------FSRMVVLNLRSNKFHGPLPTRFCDLAILQ 167
           +I   +     + S+D+                 +  LN++ +  H        D   L 
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLN 184

Query: 168 ILDIADNNLSG 178
            L      + G
Sbjct: 185 QLYAFSQTIGG 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLE 60
                 L +  + +  +  L  +    S   V L + DN  + +I       +  +    
Sbjct: 100 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL--SFESV 157

Query: 61  ALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFG 119
            L LN N +Q E+ +   +   L  L LS+N  +  LP + F   +  V LD+ + R+  
Sbjct: 158 ILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216

Query: 120 TIPATLKNCTALESLD 135
                L+N   L +  
Sbjct: 217 LPSYGLENLKKLRARS 232

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 18/152 (11%)

Query: 29  SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD-QNLKILK 87
             L  + +   + L  I+            L+ L +++  ++  LPD          +L 
Sbjct: 79  PKLHEIRIEKANNLLYINPEAFQN---LPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLD 134

Query: 88  LSNNKFIGNLP-NSFGSLAF-LVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVL 145
           + +N  I  +  NSF  L+F  V L L KN +   I  +  N T L+ L           
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHNSAFNGTQLDEL----------N 183

Query: 146 NLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
              +N         F   +   ILDI+   + 
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 13/126 (10%)

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRL 117
              L+     L+      +    +L+ +++S N  +  +  + F +L  L  + + K   
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 118 FGTIPA-TLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNL 176
              I     +N   L+ L            + +                  +LDI DN  
Sbjct: 92  LLYINPEAFQNLPNLQYLL-----------ISNTGIKHLPDVHKIHSLQKVLLDIQDNIN 140

Query: 177 SGAIPN 182
              I  
Sbjct: 141 IHTIER 146

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 25/182 (13%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLISSNLV---YLGLSDNSFLGSISHFLCDKINETKRL 59
           +  +   L    L    +  +      +L     L L+ N  + S++            L
Sbjct: 50  SFPELQVL---DLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSG---LSSL 102

Query: 60  EALKLNDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLP--NSFGSLAFLVWLDLGKNR 116
           + L   +  L   L +  +   + LK L +++N  I +      F +L  L  LDL  N+
Sbjct: 103 QKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 117 LFGTIPA-TLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNN 175
           +  +I    L+    +  L++        L+L  N  +   P  F ++  L+ L +  N 
Sbjct: 161 I-QSIYCTDLRVLHQMPLLNLS-------LDLSLNPMNFIQPGAFKEIR-LKELALDTNQ 211

Query: 176 LS 177
           L 
Sbjct: 212 LK 213

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 37/178 (20%), Positives = 66/178 (37%), Gaps = 19/178 (10%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEAL 62
              +     F    +      L L +S  +       +F     +F    +  +  ++  
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK-DPDNFTFKGLEASG-VKTC 280

Query: 63  KLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFGTI 121
            L+ + +   L   +    +L+ L L+ N+ I  +  N+F  L  L+ L+L +N L G+I
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFL-GSI 338

Query: 122 PA-TLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTR-FCDLAILQILDIADNNLS 177
            +   +N   LE LD           L  N     L  + F  L  L+ L +  N L 
Sbjct: 339 DSRMFENLDKLEVLD-----------LSYNHIRA-LGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 42/301 (13%), Positives = 79/301 (26%), Gaps = 43/301 (14%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLISS---NLVYLGLSDNSFLGSISHFLCDKINETK 57
           +P L      +   L  N+++ L     S   +L +L +   +    I +          
Sbjct: 25  VPELPAHVNYV--DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG---LS 79

Query: 58  RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNL--PNSFGSLAFLVWLDLGKN 115
            L  LKL+ N         +    NL++L L+     G +   N F  L  L  L L  N
Sbjct: 80  SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139

Query: 116 RLFGTIPATL-KNCTALESLDVER----------FSRMVVLNLR-------------SNK 151
            +    PA+   N      LD+                   +                  
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199

Query: 152 FHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVD 211
                         +  LD++ N    ++     +        S   S   ++       
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259

Query: 212 VILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEV-RNLKATQSLNFSHNTF 270
                        E     +  +L      S++  +  +   V  +    + L  + N  
Sbjct: 260 NFKDPDNFTFKGLEASGV-KTCDL------SKSK-IFALLKSVFSHFTDLEQLTLAQNEI 311

Query: 271 T 271
            
Sbjct: 312 N 312

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 26/127 (20%), Positives = 50/127 (39%), Gaps = 14/127 (11%)

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRL 117
            + LKL + +L+      + +  N+  + +S +  +  L  +SF +L+ +  +++   R 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 118 FGTIPA-TLKNCTALESLDVERFSRMVVLNLRSNKFHG-PLPTRFCDLAILQILDIADNN 175
              I    LK    L+ L            + +      P  T+     I  IL+I DN 
Sbjct: 93  LTYIDPDALKELPLLKFLG-----------IFNTGLKMFPDLTKVYSTDIFFILEITDNP 141

Query: 176 LSGAIPN 182
              +IP 
Sbjct: 142 YMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 28/155 (18%), Positives = 63/155 (40%), Gaps = 22/155 (14%)

Query: 29  SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDC--WMSDQNLKIL 86
           S + ++ + +   L  I      ++     L+ L + +  L+   PD     S     IL
Sbjct: 80  SKVTHIEIRNTRNLTYIDPDALKEL---PLLKFLGIFNTGLK-MFPDLTKVYSTDIFFIL 135

Query: 87  KLSNNKFIGNLP-NSFGSL-AFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVV 144
           ++++N ++ ++P N+F  L    + L L  N    ++     N T L+++          
Sbjct: 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVY--------- 185

Query: 145 LNLRSNKFHGPLPTR-FCDLA-ILQILDIADNNLS 177
             L  NK+   +    F  +     +LD++  +++
Sbjct: 186 --LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 32/209 (15%), Positives = 63/209 (30%), Gaps = 44/209 (21%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEA 61
                           +      P  +     + +S              +    ++   
Sbjct: 28  VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL------------RDCLDRQAHE 75

Query: 62  LKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI 121
           L+LN+  L   LP+      +L+ L  S N  +  LP    SL  L+  +     L    
Sbjct: 76  LELNNLGLS-SLPELP---PHLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 122 PA---------------TLKNCTALESLDV---------ERFSRMVVLNLRSNKFHGPLP 157
           P                 L+N + L+ +DV         +    +  +   +N+    LP
Sbjct: 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE-LP 189

Query: 158 TRFCDLAILQILDIADNNLSGAIPNYINN 186
               +L  L  +   +N+L   +P+   +
Sbjct: 190 E-LQNLPFLTAIYADNNSLK-KLPDLPLS 216

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 39/192 (20%), Positives = 72/192 (37%), Gaps = 32/192 (16%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEA 61
                   LL  + +   +S L P     L YLG+S+N  L  +      ++  +  L+ 
Sbjct: 108 ELPQSLKSLLVDNNNLKALSDLPP----LLEYLGVSNNQ-LEKL-----PELQNSSFLKI 157

Query: 62  LKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI 121
           + +++N L+ +LPD      +L+ +   NN+ +  LP    +L FL  +    N L   +
Sbjct: 158 IDVDNNSLK-KLPD---LPPSLEFIAAGNNQ-LEELPE-LQNLPFLTAIYADNNSL-KKL 210

Query: 122 PATLKNCTALESLDV-----------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILD 170
           P    +   LES+             +    +  +   +N     LP     L  L + D
Sbjct: 211 PDLPLS---LESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRD 266

Query: 171 IADNNLSGAIPN 182
               +L     +
Sbjct: 267 NYLTDLPELPQS 278

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 27/191 (14%)

Query: 2   PNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEA 61
           P L     L     D+N++  L  L   +L  +   +N     +      ++     L  
Sbjct: 189 PELQNLPFLTAIYADNNSLKKLPDLP-LSLESIVAGNN----ILEEL--PELQNLPFLTT 241

Query: 62  LKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI 121
           +  ++N L+  LPD      +L+ L + +N  + +LP    SL FL   +   + L    
Sbjct: 242 IYADNNLLK-TLPDLP---PSLEALNVRDNY-LTDLPELPQSLTFLDVSENIFSGL---- 292

Query: 122 PATLKNCTALESLDV------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNN 175
                N   L +         +    +  LN+ +NK    LP        L+ L  + N+
Sbjct: 293 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNH 348

Query: 176 LSGAIPNYINN 186
           L+  +P    N
Sbjct: 349 LA-EVPELPQN 358

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 25/176 (14%)

Query: 17  SNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDC 76
            +N    LP +  +L +L +S+N     +S            L  L  + N ++  L D 
Sbjct: 265 RDNYLTDLPELPQSLTFLDVSENI-FSGLSELP-------PNLYYLNASSNEIR-SLCDL 315

Query: 77  WMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV 136
                +L+ L +SNNK I  LP        L  L    N L   +P   +N   L+ L V
Sbjct: 316 P---PSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEVPELPQN---LKQLHV 364

Query: 137 E--RFSRM--VVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT 188
           E         +  ++   + +  L         L+ L +  N L    P+   +V 
Sbjct: 365 EYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVE 419

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 30/170 (17%)

Query: 17  SNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDC 76
           S+N    L  +  +L  L +S+N  L  +            RLE L  + N+L  E+P+ 
Sbjct: 305 SSNEIRSLCDLPPSLEELNVSNNK-LIELPALPP-------RLERLIASFNHLA-EVPE- 354

Query: 77  WMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV 136
               QNLK L +  N      P+   S+      DL  N     +P   +N   L+ L V
Sbjct: 355 --LPQNLKQLHVEYNPLR-EFPDIPESV-----EDLRMNSHLAEVPELPQN---LKQLHV 403

Query: 137 ---------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                    +    +  L + S +   P          L+      ++  
Sbjct: 404 ETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 5e-06
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 9/137 (6%)

Query: 3   NLTKFTQLLFRSLDSNNMSGL--LPLISSNLVYLGLSDNSFLGSISHFLCDKI-NETKRL 59
             +   +L    L  N +     + L++ N+  L   D S L S++    D+     + +
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS-LNSLNSHAYDRTCAWAESI 430

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG 119
             L L+ N L G +  C      +K+L L NN+ I ++P     L  L  L++  N+L  
Sbjct: 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQL-K 486

Query: 120 TIP-ATLKNCTALESLD 135
           ++P       T+L+ + 
Sbjct: 487 SVPDGVFDRLTSLQYIW 503

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 34/183 (18%)

Query: 5   TKFTQLLFRSLDSNNMSGLL---PLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEA 61
           + F ++  + L  ++   +    P   S+  +L  + N      +  +    +  KRL+ 
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV----FTDSVFQGCSTLKRLQT 381

Query: 62  LKLNDNYLQGELPDCWMSDQNLKILKLSNNKF----IGNLPNSFGSLAFLVWLDLGKNRL 117
           L L  N L+       +  +N+  L+  +             +      ++ L+L  N L
Sbjct: 382 LILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440

Query: 118 ----FGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIAD 173
               F  +P  +K                 VL+L +N+    +P     L  LQ L++A 
Sbjct: 441 TGSVFRCLPPKVK-----------------VLDLHNNRIMS-IPKDVTHLQALQELNVAS 482

Query: 174 NNL 176
           N L
Sbjct: 483 NQL 485

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 51/175 (29%), Positives = 73/175 (41%), Gaps = 24/175 (13%)

Query: 8   TQLLFRSLDSNNMSGLLPLISSNLV---YLGLSDNSFLGSISHFLCDKINETKRLEALKL 64
           T+ L   L SN +S L       L     L L+DN  L ++   +  ++     LE L +
Sbjct: 39  TKKLD--LQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKN---LETLWV 92

Query: 65  NDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLPNS-FGSLAFLVWLDLGKNRLFGTIP 122
            DN LQ  LP        NL  L+L  N+ + +LP   F SL  L +L LG N L  ++P
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNEL-QSLP 149

Query: 123 ATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
             +     L SL          L L +N+        F  L  L+ L + +N L 
Sbjct: 150 KGV--FDKLTSLKE--------LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 16/115 (13%)

Query: 82  NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPAT----LKNCTALE----- 132
           + K L L +NK       +F  L  L  L L  N+L  T+PA     LKN   L      
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNK 96

Query: 133 --SLDVERFSRMV---VLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPN 182
             +L +  F ++V    L L  N+     P  F  L  L  L +  N L  ++P 
Sbjct: 97  LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 2e-05
 Identities = 33/189 (17%), Positives = 53/189 (28%), Gaps = 22/189 (11%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEAL 62
            +     LL+        S L  +      YL    + FL            E   +  L
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL----LENSVLKMEYADVRVL 446

Query: 63  KLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIP 122
            L    L        +    +  L LS+N+ +  LP +  +L  L  L    N L     
Sbjct: 447 HLAHKDLTVLCHLEQLL--LVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALE---- 499

Query: 123 ATLKNCTALESLDVERFSRMVVLNLRSNKFHG-PLPTRFCDLAILQILDIADNNLSGAIP 181
             +     L  L          L L +N+               L +L++  N+L     
Sbjct: 500 -NVDGVANLPRL--------QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEE 549

Query: 182 NYINNVTGM 190
                +  M
Sbjct: 550 GIQERLAEM 558

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 30/187 (16%), Positives = 64/187 (34%), Gaps = 26/187 (13%)

Query: 3   NLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRLEA 61
                   +  +   +N++  +       +  L       + +I       +     L  
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTG-VTTIEG-----VQYLNNLIG 67

Query: 62  LKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI 121
           L+L DN +    P   ++   +  L+LS N  + N+      L  +  LDL   ++    
Sbjct: 68  LELKDNQITDLAPLKNLT--KITELELSGNP-LKNVSA-IAGLQSIKTLDLTSTQITDVT 123

Query: 122 PATLKNCTALESLDVER-----------FSRMVVLNLRSNKFHGPLPTRFCDLAILQILD 170
           P  L   + L+ L ++             + +  L++ + +     P    +L+ L  L 
Sbjct: 124 P--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 171 IADNNLS 177
             DN +S
Sbjct: 180 ADDNKIS 186

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 39/200 (19%), Positives = 81/200 (40%), Gaps = 26/200 (13%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
           +  +     L+   L  N ++ L PL + + +  L LS N  L ++S          + +
Sbjct: 56  IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP-LKNVSAI-----AGLQSI 109

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG 119
           + L L    +    P   +S  NL++L L  N+ I N+      L  L +L +G  ++  
Sbjct: 110 KTLDLTSTQITDVTPLAGLS--NLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQV-- 163

Query: 120 TIPATLKNCTALESLD-----------VERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI 168
           +    L N + L +L            +     ++ ++L++N+     P    + + L I
Sbjct: 164 SDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 169 LDIADNNLSGAIPNYINNVT 188
           + + +  ++     Y NN+ 
Sbjct: 222 VTLTNQTITNQPVFYNNNLV 241

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 34/150 (22%), Positives = 55/150 (36%), Gaps = 19/150 (12%)

Query: 27  ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKIL 86
           +   +  + L  N+ +  I           K+L  + L++N +    PD +   ++L  L
Sbjct: 30  LPETITEIRLEQNT-IKVIPPGAFSPY---KKLRRIDLSNNQISELAPDAFQGLRSLNSL 85

Query: 87  KLSNNKFIGNLPNS-FGSLAFLVWLDLGKNRLFGTIPA-TLKNCTALESLDVERFSRMVV 144
            L  NK I  LP S F  L  L  L L  N++   +     ++   L  L          
Sbjct: 86  VLYGNK-ITELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLS--------- 134

Query: 145 LNLRSNKFHGPLPTRFCDLAILQILDIADN 174
             L  NK        F  L  +Q + +A N
Sbjct: 135 --LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 20/123 (16%)

Query: 60  EALKLNDNYLQGELPDCWMSD-QNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRL 117
             L+LN+N                L+ +  SNNK I ++   +F   + +  + L  NR 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR- 92

Query: 118 FGTIPATLKNCTALESLDVERFSRMV---VLNLRSNKFHGPLPTRFCDLAILQILDIADN 174
                        LE++  + F  +     L LRSN+        F  L+ +++L + DN
Sbjct: 93  -------------LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139

Query: 175 NLS 177
            ++
Sbjct: 140 QIT 142

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 13/96 (13%)

Query: 82  NLKILKLSNNKFIGNLPN-SFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFS 140
           NL  L + N + + +L       L  L  L + K+ L    P        L  L+     
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN----- 86

Query: 141 RMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNL 176
                 L  N            L+ LQ L ++ N L
Sbjct: 87  ------LSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 41/200 (20%), Positives = 75/200 (37%), Gaps = 30/200 (15%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
           +  +     +    L+ N ++ + PL +  NL +L L +N  +  +S        + K+L
Sbjct: 61  VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK-VKDLSSL-----KDLKKL 114

Query: 60  EALKLNDNYLQ--GELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117
           ++L L  N +     L         L+ L L NNK I ++      L  L  L L  N++
Sbjct: 115 KSLSLEHNGISDINGLVHL----PQLESLYLGNNK-ITDITV-LSRLTKLDTLSLEDNQI 168

Query: 118 FGTIPATLKNCTALESLD-----------VERFSRMVVLNLRSNKFHGPLPTRFCDLAIL 166
             +    L   T L++L            +     + VL L S +          +L + 
Sbjct: 169 --SDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 226

Query: 167 QILDIADNNLSGAIPNYINN 186
             +   D +L    P  I++
Sbjct: 227 NTVKNTDGSLVT--PEIISD 244

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 36/176 (20%), Positives = 62/176 (35%), Gaps = 39/176 (22%)

Query: 29  SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE--------LPDCWMSD 80
             L  + LSDN+F  +    L D +++   LE L L++N L  +        L +  ++ 
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 81  -----QNLKILKLSNNKFIGN-----LPNSFGSLAFLVWLDLGKNRLF-----GTIPATL 125
                  L+ +    N+ + N        +F S   L  + + +N +        +   L
Sbjct: 154 KAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 126 KNCTALESLDVERFSRMVVLNLRSNKFHGP----LPTRFCDLAILQILDIADNNLS 177
             C  L+ LD           L+ N F       L         L+ L + D  LS
Sbjct: 213 AYCQELKVLD-----------LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	271
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.81
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.74
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.61
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.61
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.25
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.73
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.69
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.55
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.53
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.41
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.35
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.76
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.67
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.58
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.85
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.66

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=5.2e-30  Score=238.23  Aligned_cols=259  Identities=28%  Similarity=0.373  Sum_probs=174.4

Q ss_pred             ccCCC-cccEEECcCCCCCCCcccc-----CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccc
Q 043038            4 LTKFT-QLLFRSLDSNNMSGLLPLI-----SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCW   77 (271)
Q Consensus         4 ~~~~~-~L~~L~l~~n~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~   77 (271)
                      +.+++ +|+.|++++|.+.+..|..     +++|++|++++|.+++.+|..+..    +++|++|++++|.+++..|..|
T Consensus       363 l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~----l~~L~~L~Ls~N~l~~~~p~~l  438 (768)
T 3rgz_A          363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN----CSELVSLHLSFNYLSGTIPSSL  438 (768)
T ss_dssp             HHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG----CTTCCEEECCSSEEESCCCGGG
T ss_pred             HHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc----CCCCCEEECcCCcccCcccHHH
Confidence            34454 6777777777776655544     245777777777777666655544    7777777777777776677777


Q ss_pred             cCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccE
Q 043038           78 MSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVV  144 (271)
Q Consensus        78 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~  144 (271)
                      ..+++|+.|++++|.+++..|..+..+++|+.+++++|.+.+..|..+..+++|+.|++             ..+++|+.
T Consensus       439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  518 (768)
T 3rgz_A          439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI  518 (768)
T ss_dssp             GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence            77777777777777777667777777777777777777777667777777777777766             33456777


Q ss_pred             EEeccCccCCCCchhhhcCccccEEeccCCccceecCccccccc------------------------------------
Q 043038          145 LNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT------------------------------------  188 (271)
Q Consensus       145 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~------------------------------------  188 (271)
                      |++++|.+++.+|..+..+++|+.|++++|.++|.+|..+....                                    
T Consensus       519 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  598 (768)
T 3rgz_A          519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG  598 (768)
T ss_dssp             EECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred             EECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence            77777777777777777777777777777777766665543321                                    


Q ss_pred             ----------------------------------CCcc----ccccccccccccccccchhhhhhhhceec---cccchh
Q 043038          189 ----------------------------------GMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV---SREEVV  227 (271)
Q Consensus       189 ----------------------------------~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  227 (271)
                                                        .++.    .|.+.+.    +|..+. ....+..+++.   ..+.++
T Consensus       599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~----ip~~l~-~l~~L~~L~Ls~N~l~g~ip  673 (768)
T 3rgz_A          599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGY----IPKEIG-SMPYLFILNLGHNDISGSIP  673 (768)
T ss_dssp             CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSC----CCGGGG-GCTTCCEEECCSSCCCSCCC
T ss_pred             ccchhhhccccccccccccceecccCchhhhccccccEEECcCCccccc----CCHHHh-ccccCCEEeCcCCccCCCCC
Confidence                                              1111    2333332    222211 11112222221   334566


Q ss_pred             hHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          228 EYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       228 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      ..++.+++|+.|||++|++.+.+|..+..++.|++|++++|+++
T Consensus       674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            66678899999999999999899999999999999999999763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=5.5e-30  Score=238.07  Aligned_cols=268  Identities=27%  Similarity=0.356  Sum_probs=194.5

Q ss_pred             ccCCCcccEEECcCCCCCCCcccc----CCCccEEEccCCccccccchhhhhh---------------------ccC--C
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPLI----SSNLVYLGLSDNSFLGSISHFLCDK---------------------INE--T   56 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~---------------------~~~--~   56 (271)
                      |+++++|++|++++|.+.+.+|..    +++|++|++++|.+++.+|..+...                     +..  +
T Consensus       314 ~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~  393 (768)
T 3rgz_A          314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK  393 (768)
T ss_dssp             GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred             HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence            455666666666666665444432    3455666666665554444433321                     111  5


Q ss_pred             CcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec
Q 043038           57 KRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV  136 (271)
Q Consensus        57 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l  136 (271)
                      +.|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|+.+++++|.+.+.+|..+..+++|+.|++
T Consensus       394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  473 (768)
T 3rgz_A          394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL  473 (768)
T ss_dssp             CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred             CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence            67888888888888778888899999999999999998888888999999999999999998888998999999999988


Q ss_pred             -------------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccc
Q 043038          137 -------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRS  199 (271)
Q Consensus       137 -------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~  199 (271)
                                   ..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..++.|+.    .|.+.+.
T Consensus       474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~  553 (768)
T 3rgz_A          474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT  553 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred             cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence                         44678999999999999899999999999999999999999999999999888887    5655543


Q ss_pred             cccccccccc-----------------------------------------------------------------hhhhh
Q 043038          200 AQQHLHVPLD-----------------------------------------------------------------VDVIL  214 (271)
Q Consensus       200 ~~~~~~~~~~-----------------------------------------------------------------~~~~~  214 (271)
                      -+..+.....                                                                 .....
T Consensus       554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~  633 (768)
T 3rgz_A          554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS  633 (768)
T ss_dssp             CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred             CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence            1111100000                                                                 00000


Q ss_pred             hhhceec---cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          215 MEKASVV---SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       215 ~~~~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      +..+++.   ..+.++..++.+++|+.|+|++|.+.+.+|..|..+++|+.||+++|+++
T Consensus       634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred             ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence            1111111   23345666677888888888888888888888888888888888888764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=1.3e-28  Score=215.75  Aligned_cols=260  Identities=20%  Similarity=0.195  Sum_probs=148.7

Q ss_pred             CccCCCcccEEECcCCCCCCCccc-c---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCcc--
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPL-I---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDC--   76 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~-~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--   76 (271)
                      +|+++++|++|++++|.+.+.++. .   +++|++|++++|.+++..|..+.    ++++|++|++++|.+++..+..  
T Consensus        49 ~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~  124 (455)
T 3v47_A           49 SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN----GLANLEVLTLTQCNLDGAVLSGNF  124 (455)
T ss_dssp             TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT----TCTTCCEEECTTSCCBTHHHHSST
T ss_pred             HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc----CcccCCEEeCCCCCCCccccCccc
Confidence            355666666666666666544322 2   34666666666666554343333    3666666666666665433332  


Q ss_pred             ccCCCCCCEEEccCCcccccCCcc-cccCCCccEEEccCCccccccCccccCC---------------------------
Q 043038           77 WMSDQNLKILKLSNNKFIGNLPNS-FGSLAFLVWLDLGKNRLFGTIPATLKNC---------------------------  128 (271)
Q Consensus        77 ~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~l~l~~n~l~~~~~~~~~~l---------------------------  128 (271)
                      |..+++|++|++++|.+++..|.. +..+++|+.+++++|.+.+..+..+..+                           
T Consensus       125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~  204 (455)
T 3v47_A          125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK  204 (455)
T ss_dssp             TTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHH
T ss_pred             ccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccc
Confidence            566666666666666666444544 5566666666666666654444433332                           


Q ss_pred             -------CCccEEecCCC----------------------------------------------------CcccEEEecc
Q 043038          129 -------TALESLDVERF----------------------------------------------------SRMVVLNLRS  149 (271)
Q Consensus       129 -------~~L~~L~l~~~----------------------------------------------------~~L~~L~l~~  149 (271)
                             ++|+.|+++..                                                    ++|+.|++++
T Consensus       205 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  284 (455)
T 3v47_A          205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK  284 (455)
T ss_dssp             HCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS
T ss_pred             cccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC
Confidence                   33444444111                                                    3456666666


Q ss_pred             CccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceec---c
Q 043038          150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV---S  222 (271)
Q Consensus       150 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  222 (271)
                      |.+++..|..+..+++|+.|++++|++++..|..+..++.|+.    .|.+.+.....+.     ....++.+++.   .
T Consensus       285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~Ls~N~l  359 (455)
T 3v47_A          285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE-----NLDKLEVLDLSYNHI  359 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT-----TCTTCCEEECCSSCC
T ss_pred             ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc-----CcccCCEEECCCCcc
Confidence            6666555666777777777777777777666666766666665    4555443211111     11122222221   1


Q ss_pred             ccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          223 REEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       223 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      ....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus       360 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  408 (455)
T 3v47_A          360 RALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  408 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence            2222444566777788888887777655556677788888888877764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=5.8e-29  Score=207.94  Aligned_cols=169  Identities=24%  Similarity=0.398  Sum_probs=129.2

Q ss_pred             CcccEEECcCCCCCC--Ccccc---CCCccEEEccC-CccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038            8 TQLLFRSLDSNNMSG--LLPLI---SSNLVYLGLSD-NSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ   81 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~--~~~~~---~~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   81 (271)
                      .+++.|++++|.+.+  .+|..   +++|++|++++ |.+.+.+|..+..    +++|++|++++|.+++..|..|..++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~----l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK----LTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG----CTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc----CCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            578999999999988  67765   57999999995 8888777776655    89999999999999878899999999


Q ss_pred             CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCC-CccEEecCCCCcccEEEeccCccCCCCchhh
Q 043038           82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCT-ALESLDVERFSRMVVLNLRSNKFHGPLPTRF  160 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~-~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~  160 (271)
                      +|++|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..++ +|+.|+           +++|.+++..|..+
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~-----------L~~N~l~~~~~~~~  194 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT-----------ISRNRLTGKIPPTF  194 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE-----------CCSSEEEEECCGGG
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE-----------CcCCeeeccCChHH
Confidence            999999999999988888999999999999999999888888888776 666555           45555544444444


Q ss_pred             hcCccccEEeccCCccceecCcccccccCCcc
Q 043038          161 CDLAILQILDIADNNLSGAIPNYINNVTGMVT  192 (271)
Q Consensus       161 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  192 (271)
                      ..+. |+.|++++|.+++..|..+..++.|+.
T Consensus       195 ~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~  225 (313)
T 1ogq_A          195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             GGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred             hCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence            4444 555555555554444444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.4e-28  Score=205.58  Aligned_cols=223  Identities=26%  Similarity=0.392  Sum_probs=180.2

Q ss_pred             CccCCCcccEEECcC-CCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCcccc
Q 043038            3 NLTKFTQLLFRSLDS-NNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWM   78 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~-n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~   78 (271)
                      +|+++++|++|++++ |.+.+.+|..   +++|++|++++|.+++.+|..+..    +++|++|++++|.+++..|..|.
T Consensus        71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~----l~~L~~L~Ls~N~l~~~~p~~~~  146 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ----IKTLVTLDFSYNALSGTLPPSIS  146 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG----CTTCCEEECCSSEEESCCCGGGG
T ss_pred             hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC----CCCCCEEeCCCCccCCcCChHHh
Confidence            578999999999995 9998888876   579999999999998777776655    99999999999999988999999


Q ss_pred             CCCCCCEEEccCCcccccCCcccccCC-CccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCc
Q 043038           79 SDQNLKILKLSNNKFIGNLPNSFGSLA-FLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLP  157 (271)
Q Consensus        79 ~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~  157 (271)
                      .+++|++|++++|++++..|..+..++ +|+.+++++|.+.+..|..+..++ |           +.|++++|.+++..|
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-----------~~L~Ls~N~l~~~~~  214 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-----------AFVDLSRNMLEGDAS  214 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C-----------SEEECCSSEEEECCG
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c-----------cEEECcCCcccCcCC
Confidence            999999999999999988999999988 999999999999988888877664 4           455578888877777


Q ss_pred             hhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHH
Q 043038          158 TRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEIL  233 (271)
Q Consensus       158 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (271)
                      ..+..+++|+.|++++|.+++..|. +..++.|+.    .|.+.+.                          ++..+..+
T Consensus       215 ~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~--------------------------~p~~l~~l  267 (313)
T 1ogq_A          215 VLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT--------------------------LPQGLTQL  267 (313)
T ss_dssp             GGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEEC--------------------------CCGGGGGC
T ss_pred             HHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCc--------------------------CChHHhcC
Confidence            7778888888888888888754443 555555554    3444432                          11222456


Q ss_pred             hhHhhhhhcCCcccccccHhhhccCCCCEEEccCCC
Q 043038          234 NLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNT  269 (271)
Q Consensus       234 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  269 (271)
                      ++|+.|++++|.+.+.+|.. ..+++|+.+++++|.
T Consensus       268 ~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          268 KFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             TTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            77888899999988878876 788888888888885

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=4.4e-28  Score=212.43  Aligned_cols=242  Identities=17%  Similarity=0.202  Sum_probs=162.6

Q ss_pred             CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCcc-cc
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDC-WM   78 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~   78 (271)
                      +|+++++|++|++++|.+.+..|..   +++|++|++++|.+++.++..  ..+.++++|++|++++|.+++..|.. +.
T Consensus        74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  151 (455)
T 3v47_A           74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG--NFFKPLTSLEMLVLRDNNIKKIQPASFFL  151 (455)
T ss_dssp             TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHS--STTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred             cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCc--ccccCcccCCEEECCCCccCccCcccccC
Confidence            4788999999999999998777765   468999999999987643322  22556899999999999998666665 78


Q ss_pred             CCCCCCEEEccCCcccccCCcccccC----------------------------------CCccEEEccCCccccccCcc
Q 043038           79 SDQNLKILKLSNNKFIGNLPNSFGSL----------------------------------AFLVWLDLGKNRLFGTIPAT  124 (271)
Q Consensus        79 ~l~~L~~L~l~~n~~~~~~~~~~~~l----------------------------------~~L~~l~l~~n~l~~~~~~~  124 (271)
                      .+++|++|++++|.+++..+..+..+                                  ++|+.|++++|.+.+..|..
T Consensus       152 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  231 (455)
T 3v47_A          152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR  231 (455)
T ss_dssp             GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred             CCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence            89999999999999886655544433                                  56778888887765443332


Q ss_pred             ccC---------------------------------------CCCccEEec-------------CCCCcccEEEeccCcc
Q 043038          125 LKN---------------------------------------CTALESLDV-------------ERFSRMVVLNLRSNKF  152 (271)
Q Consensus       125 ~~~---------------------------------------l~~L~~L~l-------------~~~~~L~~L~l~~n~l  152 (271)
                      +..                                       .++++.+++             ..+++|+.|++++|.+
T Consensus       232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  311 (455)
T 3v47_A          232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI  311 (455)
T ss_dssp             HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence            211                                       134556655             3456677777777777


Q ss_pred             CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceec---cccc
Q 043038          153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV---SREE  225 (271)
Q Consensus       153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  225 (271)
                      ++..|..+..+++|+.|++++|.+++..+..+..++.|+.    .|.+.+.....+.     ....+..+++.   ....
T Consensus       312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~  386 (455)
T 3v47_A          312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-----GLPNLKELALDTNQLKSV  386 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-----TCTTCCEEECCSSCCSCC
T ss_pred             cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-----ccccccEEECCCCccccC
Confidence            7666666777777777777777776555666666666665    4555443221111     11112222211   1122


Q ss_pred             hhhHHHHHhhHhhhhhcCCccccccc
Q 043038          226 VVEYNEILNLVMVTIVSRNDLLKNVP  251 (271)
Q Consensus       226 ~~~~~~~~~~L~~L~L~~n~l~~~~~  251 (271)
                      .+..+..+++|+.|++++|.+.+.+|
T Consensus       387 ~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          387 PDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CHhHhccCCcccEEEccCCCcccCCC
Confidence            23334678999999999999988776

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=1.8e-27  Score=209.92  Aligned_cols=238  Identities=19%  Similarity=0.168  Sum_probs=150.5

Q ss_pred             CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS   79 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   79 (271)
                      +|.++++|++|++++|.+.+..|..   +++|++|++++|.++...+..    |.++++|++|++++|.++...+..|..
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~  126 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV----FTGLSNLTKLDISENKIVILLDYMFQD  126 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS----STTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc----ccCCCCCCEEECCCCccccCChhHccc
Confidence            4667777777777777777665554   356777777777766422222    223666666666666666555555666


Q ss_pred             CCCCCEEEccCCcccccCCcccccCCCccEEEccCCcccc------------------------ccCccccCCCCccEEe
Q 043038           80 DQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG------------------------TIPATLKNCTALESLD  135 (271)
Q Consensus        80 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~------------------------~~~~~~~~l~~L~~L~  135 (271)
                      +++|++|++++|.++...+..|..+++|+.|++++|.+.+                        ..+..+..+++|+.|+
T Consensus       127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~  206 (477)
T 2id5_A          127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE  206 (477)
T ss_dssp             CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred             cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence            6666666666666654445555555555555555555553                        2233344444455554


Q ss_pred             cCCC-------------CcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----cccccc
Q 043038          136 VERF-------------SRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSR  198 (271)
Q Consensus       136 l~~~-------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~  198 (271)
                      +...             .+|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+..++.|+.    .|.+.+
T Consensus       207 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  286 (477)
T 2id5_A          207 ISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV  286 (477)
T ss_dssp             EECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE
T ss_pred             CCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce
Confidence            4221             25666777777776444456677777777777777777555556666666655    344443


Q ss_pred             ccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038          199 SAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      ..                          +..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+
T Consensus       287 ~~--------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          287 VE--------------------------PYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             EC--------------------------TTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             EC--------------------------HHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            21                          12224678999999999999876677789999999999999976

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=2.5e-27  Score=208.96  Aligned_cols=255  Identities=19%  Similarity=0.146  Sum_probs=199.8

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      +.++.|++++|.+.+..+..   +++|++|++++|.+++..|..+.    ++++|++|++++|.++...+..|.++++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  107 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN----NLFNLRTLGLRSNRLKLIPLGVFTGLSNLT  107 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCSCCTTSSTTCTTCC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh----CCccCCEEECCCCcCCccCcccccCCCCCC
Confidence            57999999999999876655   46999999999999875565554    499999999999999955556789999999


Q ss_pred             EEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccEEEeccCc
Q 043038           85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLRSNK  151 (271)
Q Consensus        85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L~l~~n~  151 (271)
                      +|++++|+++...+..|..+++|+.|++++|.+.+..+..+..+++|+.|++             ..+++|+.|++++|.
T Consensus       108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred             EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence            9999999999777888999999999999999998777788999999999987             457789999999999


Q ss_pred             cCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceec---ccc
Q 043038          152 FHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV---SRE  224 (271)
Q Consensus       152 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  224 (271)
                      +++..+..+..+++|+.|++++|...+.++.......+|+.    .|.+...+...+     .....+..+++.   ...
T Consensus       188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~  262 (477)
T 2id5_A          188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV-----RHLVYLRFLNLSYNPIST  262 (477)
T ss_dssp             CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHH-----TTCTTCCEEECCSSCCCE
T ss_pred             CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHh-----cCccccCeeECCCCcCCc
Confidence            98777778888999999999998776666665544445554    455554321111     111222222221   112


Q ss_pred             chhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          225 EVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       225 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      .....+..+++|+.|++++|.+.+..|..|..+++|+.|++++|+|+
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  309 (477)
T 2id5_A          263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT  309 (477)
T ss_dssp             ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred             cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence            22333467889999999999998888999999999999999999875

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=4.3e-26  Score=206.68  Aligned_cols=256  Identities=22%  Similarity=0.242  Sum_probs=164.7

Q ss_pred             ccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCc-cccC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPD-CWMS   79 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~   79 (271)
                      |+++++|++|++++|.+.. +|..   +++|++|++++|.+++..|..+.    .+++|++|++++|.+.+.++. .+..
T Consensus       274 ~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISAS----NFPSLTHLSIKGNTKRLELGTGCLEN  348 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGG----GCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred             hccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhh----ccCcCCEEECCCCCcccccchhhhhc
Confidence            6677778888888887763 4433   35778888888877654443333    377778888887777644433 4677


Q ss_pred             CCCCCEEEccCCcccccC--CcccccCCCccEEEccCCccccccCccccCCCCccEEec--------------CCCCccc
Q 043038           80 DQNLKILKLSNNKFIGNL--PNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV--------------ERFSRMV  143 (271)
Q Consensus        80 l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l--------------~~~~~L~  143 (271)
                      +++|++|++++|.+++..  +..+..+++|+.+++++|.+.+..|..+..+++|+.|++              ..+++|+
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  428 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK  428 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence            777888888887776443  556777777888888888777666667777777777776              2346677


Q ss_pred             EEEeccCccCCCCchhhhcCccccEEeccCCcccee---cCcccccccCCcc----ccccccccccccccccchhhhhhh
Q 043038          144 VLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGA---IPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILME  216 (271)
Q Consensus       144 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~  216 (271)
                      .|++++|.+++..|..+..+++|+.|++++|.+++.   .+..+..++.|+.    .|.+.+.....+.     ....+.
T Consensus       429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~  503 (606)
T 3t6q_A          429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT-----SLKMMN  503 (606)
T ss_dssp             EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTT-----TCTTCC
T ss_pred             EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhc-----cccCCC
Confidence            778888777766677777777788888877777642   2244566666665    4555543221111     111122


Q ss_pred             hceec---cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038          217 KASVV---SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       217 ~~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      .+++.   ..+..+..+..+++| .|++++|.+.+..|..+..+++|+.+++++|.+
T Consensus       504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred             EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence            22211   222334444566666 777777777766666777777777777777764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=4.8e-26  Score=195.84  Aligned_cols=249  Identities=16%  Similarity=0.168  Sum_probs=166.0

Q ss_pred             ccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD   80 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l   80 (271)
                      ++++++|++|++++|.+.+..+..   +++|++|++++|.+++..|..+.    ++++|++|++++|.++...+..|..+
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~l~~~~~~~l  140 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ----NVPLLTVLVLERNDLSSLPRGIFHNT  140 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc----CCCCCCEEECCCCccCcCCHHHhcCC
Confidence            456777888888888777655543   45778888888887764444333    37778888888888773333446777


Q ss_pred             CCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEE-------------------ec-----
Q 043038           81 QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESL-------------------DV-----  136 (271)
Q Consensus        81 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L-------------------~l-----  136 (271)
                      ++|++|++++|.++...+..+..+++|+.|++++|.+++. +  +..+++|+.+                   ++     
T Consensus       141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l  217 (390)
T 3o6n_A          141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI  217 (390)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred             CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--cccccccceeecccccccccCCCCcceEEECCCCee
Confidence            8888888888887766666677778888888888877632 2  2333333333                   33     


Q ss_pred             -----CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccc
Q 043038          137 -----ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVP  207 (271)
Q Consensus       137 -----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~  207 (271)
                           ...++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|..+..++.|+.    .|.+.+.+...    
T Consensus       218 ~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----  291 (390)
T 3o6n_A          218 NVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG----  291 (390)
T ss_dssp             CEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSS----
T ss_pred             eeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCccc----
Confidence                 1234677888888888743  56788899999999999998777888888888877    55555532111    


Q ss_pred             cchhhhhhhhceec--cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038          208 LDVDVILMEKASVV--SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       208 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                        .....+..+++.  ....++..+..+++|+.|++++|.+.+ ++  +..+++|+.|++++|.+
T Consensus       292 --~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          292 --QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             --SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCE
T ss_pred             --CCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCc
Confidence              011111222211  223345555778888888888888865 33  67788888888888875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=2.4e-26  Score=193.28  Aligned_cols=218  Identities=19%  Similarity=0.168  Sum_probs=178.6

Q ss_pred             CCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038            7 FTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL   83 (271)
Q Consensus         7 ~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L   83 (271)
                      .++++.|++++|.+.. +|..   +++|++|++++|.++ .+|..+..    +++|++|++++|.++ .+|..+..+++|
T Consensus        80 ~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~----l~~L~~L~Ls~n~l~-~lp~~l~~l~~L  152 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ----FAGLETLTLARNPLR-ALPASIASLNRL  152 (328)
T ss_dssp             STTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGG----GTTCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred             ccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhc----cCCCCEEECCCCccc-cCcHHHhcCcCC
Confidence            4789999999999984 4443   579999999999998 56755544    899999999999999 889899999999


Q ss_pred             CEEEccCCcccccCCccccc---------CCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCC
Q 043038           84 KILKLSNNKFIGNLPNSFGS---------LAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG  154 (271)
Q Consensus        84 ~~L~l~~n~~~~~~~~~~~~---------l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~  154 (271)
                      ++|++++|.+.+.+|..+..         +++|+.|++++|.+. .+|..+..+++|           +.|++++|.++ 
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-----------~~L~L~~N~l~-  219 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-----------KSLKIRNSPLS-  219 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-----------CEEEEESSCCC-
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-----------CEEEccCCCCC-
Confidence            99999998877677776654         899999999999998 788777766654           45668999998 


Q ss_pred             CCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHH
Q 043038          155 PLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYN  230 (271)
Q Consensus       155 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (271)
                      .+|..+..+++|+.|++++|.+.+.+|..+..++.|+.    .|.+.+.    +|                      ..+
T Consensus       220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~----~p----------------------~~~  273 (328)
T 4fcg_A          220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT----LP----------------------LDI  273 (328)
T ss_dssp             CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB----CC----------------------TTG
T ss_pred             cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh----cc----------------------hhh
Confidence            46677889999999999999888888888888888776    3333332    22                      223


Q ss_pred             HHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038          231 EILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       231 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      ..+++|+.|++++|.+.+.+|.++..+++|+.+++..+.+
T Consensus       274 ~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            4688999999999999999999999999999999987754

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.94  E-value=4.3e-26  Score=206.66  Aligned_cols=243  Identities=19%  Similarity=0.154  Sum_probs=182.7

Q ss_pred             CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCC--Cccc
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGEL--PDCW   77 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~   77 (271)
                      .++++++|++|++++|.+.+..|..   +++|++|++++|.+.+.++..   .+..+++|++|++++|.+++..  +..+
T Consensus       296 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~  372 (606)
T 3t6q_A          296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTG---CLENLENLRELDLSHDDIETSDCCNLQL  372 (606)
T ss_dssp             SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS---TTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred             hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchh---hhhccCcCCEEECCCCccccccCcchhc
Confidence            4788899999999999998776654   579999999999887655533   2345889999999999988544  6778


Q ss_pred             cCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCc-cccCCCCccEEec-------------CCCCccc
Q 043038           78 MSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA-TLKNCTALESLDV-------------ERFSRMV  143 (271)
Q Consensus        78 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~l~~L~~L~l-------------~~~~~L~  143 (271)
                      ..+++|++|++++|.+++..+..+..+++|+.+++++|.+.+..+. .+..+++|+.|++             ..+++|+
T Consensus       373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  452 (606)
T 3t6q_A          373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ  452 (606)
T ss_dssp             TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred             ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence            8899999999999998877788888889999999999988765554 3778888998887             4467899


Q ss_pred             EEEeccCccCCC---CchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhh
Q 043038          144 VLNLRSNKFHGP---LPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILME  216 (271)
Q Consensus       144 ~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~  216 (271)
                      .|++++|.+++.   .+..+..+++|+.|++++|++++..|..+..++.|+.    .|.+.+.....+.....  . .+.
T Consensus       453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~--L-~L~  529 (606)
T 3t6q_A          453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG--I-YLN  529 (606)
T ss_dssp             EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS--C-EEE
T ss_pred             EEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc--c-EEE
Confidence            999999998752   2356888899999999999998777888888888877    66666643222221100  0 111


Q ss_pred             hceeccccchhhHHHHHhhHhhhhhcCCccccccc
Q 043038          217 KASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVP  251 (271)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  251 (271)
                      ..........+..+..+++|+.+++++|.+..+.+
T Consensus       530 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          530 LASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            11111233446667889999999999999876554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=8.4e-27  Score=212.38  Aligned_cols=264  Identities=16%  Similarity=0.196  Sum_probs=164.5

Q ss_pred             Ccc--CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCc-ccc-ccchhhhh--hccCCCcccEEEccCcccCCCC
Q 043038            3 NLT--KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNS-FLG-SISHFLCD--KINETKRLEALKLNDNYLQGEL   73 (271)
Q Consensus         3 ~~~--~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~-~~~-~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~   73 (271)
                      .++  ++++|++|++++|.+.+.+|..   +++|++|++++|. +++ .+|..+..  .+..+++|++|++++|.++ .+
T Consensus       242 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~i  320 (636)
T 4eco_A          242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TF  320 (636)
T ss_dssp             CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SC
T ss_pred             hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-cc
Confidence            355  8999999999999998888876   4689999999998 876 67766654  1222378888888888888 77


Q ss_pred             Cc--cccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCC-ccEEecCC------------
Q 043038           74 PD--CWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTA-LESLDVER------------  138 (271)
Q Consensus        74 ~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~-L~~L~l~~------------  138 (271)
                      |.  .+..+++|++|++++|.+++.+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|+++.            
T Consensus       321 p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~  398 (636)
T 4eco_A          321 PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDA  398 (636)
T ss_dssp             CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCT
T ss_pred             CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhh
Confidence            77  78888888888888888876677 6777777777777777777 66776777777 77776611            


Q ss_pred             --CCcccEEEeccCccCCCCchhhh-------cCccccEEeccCCccceecCcc-cccccCCcc----ccccccccccc-
Q 043038          139 --FSRMVVLNLRSNKFHGPLPTRFC-------DLAILQILDIADNNLSGAIPNY-INNVTGMVT----TNSFSRSAQQH-  203 (271)
Q Consensus       139 --~~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~----~n~~~~~~~~~-  203 (271)
                        +++|+.|++++|.+++..|..+.       .+++|+.|++++|+++ .+|.. +..++.|+.    .|.+...+... 
T Consensus       399 ~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~  477 (636)
T 4eco_A          399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSL  477 (636)
T ss_dssp             TCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred             cccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence              22566666666666655555554       4455566666666555 33332 222344433    33333221111 


Q ss_pred             -------------------------cccccc-hhhhhhhhceec--cccchhhHHHHHhhHhhhhh------cCCccccc
Q 043038          204 -------------------------LHVPLD-VDVILMEKASVV--SREEVVEYNEILNLVMVTIV------SRNDLLKN  249 (271)
Q Consensus       204 -------------------------~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~L------~~n~l~~~  249 (271)
                                               +|..+. .....+..+++.  ....++..+..+++|+.|++      ++|++.+.
T Consensus       478 ~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~  557 (636)
T 4eco_A          478 KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLRE  557 (636)
T ss_dssp             EETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred             ccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccccc
Confidence                                     111111 011111111111  11224444455666777766      34555666


Q ss_pred             ccHhhhccCCCCEEEccCCCC
Q 043038          250 VPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       250 ~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      +|.++..+++|++|++++|+|
T Consensus       558 ~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          558 WPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CCTTGGGCSSCCEEECCSSCC
T ss_pred             ChHHHhcCCCCCEEECCCCcC
Confidence            777777777777777777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=1.2e-25  Score=203.38  Aligned_cols=249  Identities=16%  Similarity=0.166  Sum_probs=171.0

Q ss_pred             ccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD   80 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l   80 (271)
                      ++++++|++|++++|.+.+..|..   +++|++|++++|.+++..|..+.    ++++|++|++++|.++...+..|..+
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~l~~~~~~~l  146 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ----NVPLLTVLVLERNDLSSLPRGIFHNT  146 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc----CCCCCCEEEeeCCCCCCCCHHHhccC
Confidence            456778888888888887666544   45788888888888764444433    47888888888888874444556788


Q ss_pred             CCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------------------------
Q 043038           81 QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------------------------  136 (271)
Q Consensus        81 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------------------------  136 (271)
                      ++|++|++++|.+++..|..+..+++|+.|++++|.+.+. +  +..+++|+.+++                        
T Consensus       147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l  223 (597)
T 3oja_B          147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI  223 (597)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCC
T ss_pred             CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccccCCchhheeeccCCcc
Confidence            8888888888888866677788888888888888887743 2  233344444333                        


Q ss_pred             -----CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccc
Q 043038          137 -----ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVP  207 (271)
Q Consensus       137 -----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~  207 (271)
                           ...++|+.|++++|.+++  +..+..+++|+.|++++|.+.+..|..+..++.|+.    .|.+.+.+..     
T Consensus       224 ~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-----  296 (597)
T 3oja_B          224 NVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY-----  296 (597)
T ss_dssp             CEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECS-----
T ss_pred             cccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcc-----
Confidence                 122457788888888875  467888999999999999999888888888888877    5666553211     


Q ss_pred             cchhhhhhhhcee--ccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038          208 LDVDVILMEKASV--VSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       208 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      .. ....+..+.+  .....++..++.+++|+.|++++|.+.+ ++  +..+++|+.|++++|.+
T Consensus       297 ~~-~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          297 GQ-PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             SS-CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCE
T ss_pred             cc-cCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCC
Confidence            10 0111111211  1223455556778888888888888765 33  66778888888888875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=1.4e-25  Score=188.67  Aligned_cols=174  Identities=14%  Similarity=0.204  Sum_probs=102.6

Q ss_pred             cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038            9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL   88 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   88 (271)
                      +++.++++++.+...+....+++++|++++|.+++..+..+    .++++|++|++++|.++...|..|..+++|++|++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDF----KNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTT----TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhh----ccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            56677777776664333334577777777777765333233    33677777777777777555667777777777777


Q ss_pred             cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec---------------CCCCcccEEEeccCccC
Q 043038           89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV---------------ERFSRMVVLNLRSNKFH  153 (271)
Q Consensus        89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l---------------~~~~~L~~L~l~~n~l~  153 (271)
                      ++|.++ .+|..+.  ++|+.+++++|.+.+..+..+..+++|+.|++               ..+++|++|++++|.++
T Consensus       108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            777766 4444332  56666666666666444444555666666655               22345666666666665


Q ss_pred             CCCchhhhcCccccEEeccCCccceecCcccccccCCcc
Q 043038          154 GPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT  192 (271)
Q Consensus       154 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  192 (271)
                      + +|..+.  ++|+.|++++|++++..+..+..++.|+.
T Consensus       185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  220 (330)
T 1xku_A          185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAK  220 (330)
T ss_dssp             S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred             c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence            2 333222  45666666666665444555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1e-25  Score=196.79  Aligned_cols=229  Identities=20%  Similarity=0.197  Sum_probs=180.4

Q ss_pred             ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038           10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS   89 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   89 (271)
                      .+.++.++..+...++...++++.|++++|.++...+..    |.++++|++|++++|.++...+.+|.++++|++|+++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            456778877777544444568889999999887644443    3458889999999998886666788888999999999


Q ss_pred             CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec--------------CCCCcccEEEeccCccCCC
Q 043038           90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV--------------ERFSRMVVLNLRSNKFHGP  155 (271)
Q Consensus        90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l--------------~~~~~L~~L~l~~n~l~~~  155 (271)
                      +|+++...+..|..+++|+.|++++|.+....+..+..+++|+.|++              ..+++|+.|++++|.++ .
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence            99888555567888889999999999888555557778888888887              34678999999999998 4


Q ss_pred             CchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHH
Q 043038          156 LPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNE  231 (271)
Q Consensus       156 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (271)
                      +| .+..+++|+.|++++|.+++..|..+..++.|+.    .|.+.+....                          .+.
T Consensus       200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------------~~~  252 (440)
T 3zyj_A          200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN--------------------------AFD  252 (440)
T ss_dssp             CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT--------------------------SST
T ss_pred             cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh--------------------------hhc
Confidence            55 4778899999999999999777888888888877    4555543211                          123


Q ss_pred             HHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038          232 ILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       232 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      .+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+
T Consensus       253 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          253 NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            678899999999999887777889999999999999975

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=9.1e-26  Score=197.76  Aligned_cols=229  Identities=19%  Similarity=0.176  Sum_probs=182.2

Q ss_pred             ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038           10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS   89 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   89 (271)
                      .+.++.++..+...+....+++++|++++|.+++..+..+.    ++++|++|++++|.++...+..|.++++|++|+++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~----~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFR----HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcC----CCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            45778888877754443456899999999998875554444    48899999999999986677888889999999999


Q ss_pred             CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecC--------------CCCcccEEEeccCccCCC
Q 043038           90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVE--------------RFSRMVVLNLRSNKFHGP  155 (271)
Q Consensus        90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~--------------~~~~L~~L~l~~n~l~~~  155 (271)
                      +|+++...+..|..+++|+.|++++|.+....+..+..+++|+.|++.              .+++|++|++++|.+++ 
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  210 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-  210 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence            999886666668888999999999999885555577788888888873              46789999999999984 


Q ss_pred             CchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHH
Q 043038          156 LPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNE  231 (271)
Q Consensus       156 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (271)
                      +| .+..+++|+.|++++|.+++..|..+..++.|+.    .|.+.+...                          ..+.
T Consensus       211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------------------~~~~  263 (452)
T 3zyi_A          211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER--------------------------NAFD  263 (452)
T ss_dssp             CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT--------------------------TTTT
T ss_pred             cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH--------------------------HHhc
Confidence            44 4778889999999999999777888888888877    455554311                          1224


Q ss_pred             HHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038          232 ILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       232 ~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      .+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+
T Consensus       264 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          264 GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            678899999999999876777789999999999999975

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.4e-25  Score=184.97  Aligned_cols=219  Identities=20%  Similarity=0.166  Sum_probs=166.0

Q ss_pred             cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038           11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN   90 (271)
Q Consensus        11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   90 (271)
                      +.++++++.+...+....+++++|++++|.++...+..+    ..+++|++|++++|.++...+..|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASF----RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTT----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHc----ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            578888888876544445689999999999886443334    3488999999999999866688889999999999999


Q ss_pred             Cc-ccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEE
Q 043038           91 NK-FIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL  169 (271)
Q Consensus        91 n~-~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  169 (271)
                      |. ++...+..+..+++|+.|++++|.+.+..+..+..+++|+           +|++++|.+++..+..+..+++|+.|
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-----------~L~l~~n~l~~~~~~~~~~l~~L~~L  158 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ-----------YLYLQDNALQALPDDTFRDLGNLTHL  158 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC-----------EEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCC-----------EEECCCCcccccCHhHhccCCCccEE
Confidence            97 7755577888899999999999998865566666555544           55578888876556667778888888


Q ss_pred             eccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCc
Q 043038          170 DIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRND  245 (271)
Q Consensus       170 ~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  245 (271)
                      ++++|++++..+..+..++.|+.    .|.+.+..                          +..+..+++|+.|++++|.
T Consensus       159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--------------------------PHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------------------------TTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCcccccCHHHhcCccccCEEECCCCcccccC--------------------------HhHccCcccccEeeCCCCc
Confidence            88888887555555666666665    44444321                          1122357788999999999


Q ss_pred             ccccccHhhhccCCCCEEEccCCCC
Q 043038          246 LLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       246 l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      +.+..+..+..+++|+.|++++|.+
T Consensus       213 l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          213 LSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             CCcCCHHHcccCcccCEEeccCCCc
Confidence            9886677899999999999999976

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=3e-26  Score=194.58  Aligned_cols=256  Identities=17%  Similarity=0.147  Sum_probs=133.5

Q ss_pred             cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038            9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL   88 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   88 (271)
                      ...+.+++++.+...+....+++++|++++|.+++..+..+    .++++|++|++++|.++...+..|..+++|++|++
T Consensus        32 ~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDL----QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             TTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHh----ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            33445555555553333233455556666555554222122    23555555666555555444445555555566666


Q ss_pred             cCCcccccCCcccccCCCccEEEccCCccccccCc--cccCCCCccEEec--------------CCCCcccEEEeccCcc
Q 043038           89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA--TLKNCTALESLDV--------------ERFSRMVVLNLRSNKF  152 (271)
Q Consensus        89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~--~~~~l~~L~~L~l--------------~~~~~L~~L~l~~n~l  152 (271)
                      ++|+++...+..+..+++|+.|++++|.+. .+|.  .+..+++|+.|++              ..+++|+.|++++|.+
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            555555322233555555556666555555 2332  3445555555544              2234556666666666


Q ss_pred             CCCCchhhhcCccccEEeccCCccceecCcc-cccccCCcc----ccccccccccccccccchh---hhhhhhceec--c
Q 043038          153 HGPLPTRFCDLAILQILDIADNNLSGAIPNY-INNVTGMVT----TNSFSRSAQQHLHVPLDVD---VILMEKASVV--S  222 (271)
Q Consensus       153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~----~n~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~  222 (271)
                      ++..|..+..+++|+.|++++|.+. .+|.. +..++.|+.    .|.+.+.....++......   ...+....+.  .
T Consensus       187 ~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~  265 (353)
T 2z80_A          187 QSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES  265 (353)
T ss_dssp             CEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred             CccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence            6555566666666666666666654 33322 222334433    3444432211111000000   0000000000  1


Q ss_pred             ccchhhHHHHHhhHhhhhhcCCcccccccHh-hhccCCCCEEEccCCCCC
Q 043038          223 REEVVEYNEILNLVMVTIVSRNDLLKNVPLE-VRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       223 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~i~  271 (271)
                      ...++.++..+++|+.|++++|.+.. +|.. |..+++|+.|++++|.++
T Consensus       266 l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          266 LFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             HHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCcc
Confidence            12345566788999999999999974 6666 589999999999999874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=1.7e-25  Score=202.73  Aligned_cols=112  Identities=21%  Similarity=0.186  Sum_probs=62.1

Q ss_pred             CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS   79 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   79 (271)
                      +|+++++|++|++++|.+.+..|..   +++|++|++++|.+++..|..+.    ++++|++|++++|.++...+..|..
T Consensus        51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~  126 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS----GLTSLENLVAVETKLASLESFPIGQ  126 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSST----TCTTCCEEECTTSCCCCSSSSCCTT
T ss_pred             hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcC----CcccCCEEEccCCccccccccccCC
Confidence            4566667777777777666555544   34666777777666654343333    2555666666655555333344555


Q ss_pred             CCCCCEEEccCCcccc-cCCcccccCCCccEEEccCCccc
Q 043038           80 DQNLKILKLSNNKFIG-NLPNSFGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        80 l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~l~l~~n~l~  118 (271)
                      +++|++|++++|.+++ .+|..+..+++|+.|++++|.+.
T Consensus       127 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            5555555555555542 23445555555555555555443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=2.2e-26  Score=209.65  Aligned_cols=251  Identities=19%  Similarity=0.249  Sum_probs=151.4

Q ss_pred             CccCCCcccEEECcCCC-CCC-Ccccc---C------CCccEEEccCCccccccch--hhhhhccCCCcccEEEccCccc
Q 043038            3 NLTKFTQLLFRSLDSNN-MSG-LLPLI---S------SNLVYLGLSDNSFLGSISH--FLCDKINETKRLEALKLNDNYL   69 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~-~~~-~~~~~---~------~~L~~L~l~~n~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l   69 (271)
                      .|+++++|++|++++|. +.+ .+|..   +      ++|++|++++|.++ .+|.  .+.    ++++|++|++++|.+
T Consensus       268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~----~l~~L~~L~L~~N~l  342 (636)
T 4eco_A          268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQ----KMKKLGMLECLYNQL  342 (636)
T ss_dssp             TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHT----TCTTCCEEECCSCCC
T ss_pred             HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhc----cCCCCCEEeCcCCcC
Confidence            46778888888888887 776 55544   2      67778888888777 4554  333    367777777777777


Q ss_pred             CCCCCccccCCCCCCEEEccCCcccccCCcccccCCC-ccEEEccCCccccccCccccCCC--CccEEecC---------
Q 043038           70 QGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAF-LVWLDLGKNRLFGTIPATLKNCT--ALESLDVE---------  137 (271)
Q Consensus        70 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~l~l~~n~l~~~~~~~~~~l~--~L~~L~l~---------  137 (271)
                      ++.+| .|..+++|++|++++|+++ .+|..+..+++ |+.|++++|.+. .+|..+..++  +|+.|+++         
T Consensus       343 ~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p  419 (636)
T 4eco_A          343 EGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDG  419 (636)
T ss_dssp             EEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTT
T ss_pred             ccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcch
Confidence            66666 6666666666666666666 55555666666 666666666665 4555444332  45555540         


Q ss_pred             -----------CCCcccEEEeccCccCCCCchhhhcCc-------------------------------cccEEeccCCc
Q 043038          138 -----------RFSRMVVLNLRSNKFHGPLPTRFCDLA-------------------------------ILQILDIADNN  175 (271)
Q Consensus       138 -----------~~~~L~~L~l~~n~l~~~~~~~~~~l~-------------------------------~L~~L~l~~n~  175 (271)
                                 .+++|+.|++++|.+++..+..+..++                               +|+.|++++|+
T Consensus       420 ~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~  499 (636)
T 4eco_A          420 KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK  499 (636)
T ss_dssp             CSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred             hhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc
Confidence                       222455555555555422222233344                               45555555555


Q ss_pred             cceecCcccc--cccCCcc----ccccccccccccccccchhhhhhhhcee---------ccccchhhHHHHHhhHhhhh
Q 043038          176 LSGAIPNYIN--NVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASV---------VSREEVVEYNEILNLVMVTI  240 (271)
Q Consensus       176 l~~~~~~~~~--~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~L~~L~  240 (271)
                      ++ .+|..+.  .++.|+.    .|.+.+     +|..+. ....+..+.+         ...+.++..+..+++|+.|+
T Consensus       500 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~~~-~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~  572 (636)
T 4eco_A          500 LT-KLSDDFRATTLPYLVGIDLSYNSFSK-----FPTQPL-NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQ  572 (636)
T ss_dssp             CC-BCCGGGSTTTCTTCCEEECCSSCCSS-----CCCGGG-GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEE
T ss_pred             CC-ccChhhhhccCCCcCEEECCCCCCCC-----cChhhh-cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEE
Confidence            54 4444443  4444444    444443     222111 1222333332         12345566677899999999


Q ss_pred             hcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          241 VSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       241 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      +++|.+ +.+|..+.  ++|+.|++++|.++
T Consensus       573 Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          573 IGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             CCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            999999 56888766  89999999999874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=6.8e-26  Score=188.64  Aligned_cols=221  Identities=23%  Similarity=0.274  Sum_probs=136.0

Q ss_pred             cccEEECcCCCCCCCcccc---CCCccEEEccCCccccc--cchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038            9 QLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGS--ISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL   83 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~--~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L   83 (271)
                      ++++|++++|.+....+..   +++|++|++++|.++..  .+..+.    .+++|++|++++|.++ .+|..+..+++|
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L  103 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF----GTTSLKYLDLSFNGVI-TMSSNFLGLEQL  103 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH----SCSCCCEEECCSCSEE-EEEEEEETCTTC
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc----cccccCEEECCCCccc-cChhhcCCCCCC
Confidence            4555555555555333222   34555555555555421  122222    2455555555555555 344445555555


Q ss_pred             CEEEccCCcccccCC-cccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCC-CCchhhh
Q 043038           84 KILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG-PLPTRFC  161 (271)
Q Consensus        84 ~~L~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~-~~~~~~~  161 (271)
                      ++|++++|.++...+ ..+..+++|+.|++++|.+.+..+..+..           +++|+.|++++|.+++ ..|..+.
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------l~~L~~L~l~~n~l~~~~~~~~~~  172 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-----------LSSLEVLKMAGNSFQENFLPDIFT  172 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-----------CTTCCEEECTTCEEGGGEECSCCT
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-----------CcCCCEEECCCCccccccchhHHh
Confidence            555555555553222 34455555555555555555433433333           3456677788888875 4677788


Q ss_pred             cCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHh
Q 043038          162 DLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVM  237 (271)
Q Consensus       162 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  237 (271)
                      .+++|+.|++++|.+++..|..+..++.|+.    .|.+.+....                          .+..+++|+
T Consensus       173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------------~~~~l~~L~  226 (306)
T 2z66_A          173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF--------------------------PYKCLNSLQ  226 (306)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG--------------------------GGTTCTTCC
T ss_pred             hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh--------------------------hccCcccCC
Confidence            8888888888888888666777777777766    4555443111                          113578899


Q ss_pred             hhhhcCCcccccccHhhhccC-CCCEEEccCCCCC
Q 043038          238 VTIVSRNDLLKNVPLEVRNLK-ATQSLNFSHNTFT  271 (271)
Q Consensus       238 ~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~i~  271 (271)
                      .|++++|.+.+..|..+..++ +|+.|++++|.++
T Consensus       227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             EeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            999999999988888998885 9999999999863

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.93  E-value=2.2e-25  Score=187.74  Aligned_cols=225  Identities=17%  Similarity=0.207  Sum_probs=144.3

Q ss_pred             cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038            9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL   88 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   88 (271)
                      +++.++++++.+...+....+++++|++++|.++...+..+    .++++|++|++++|.++...|.+|..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDF----KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHh----hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            57888888888775443345688888888888876444343    34888888888888888666778888888888888


Q ss_pred             cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCC--------------CcccEEEeccCccCC
Q 043038           89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERF--------------SRMVVLNLRSNKFHG  154 (271)
Q Consensus        89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~--------------~~L~~L~l~~n~l~~  154 (271)
                      ++|.++ .+|..+.  ++|++|++++|.+.+..+..+..+++|+.|++...              .+|+.|++++|.+++
T Consensus       110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG  186 (332)
T ss_dssp             CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred             CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence            888887 5555443  67888888888887444445677777777776111              056667777777663


Q ss_pred             CCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHH
Q 043038          155 PLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYN  230 (271)
Q Consensus       155 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (271)
                       +|..+.  ++|+.|++++|.+++..+..+..++.|+.    .|.+.+....                          .+
T Consensus       187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~--------------------------~~  237 (332)
T 2ft3_A          187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG--------------------------SL  237 (332)
T ss_dssp             -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT--------------------------GG
T ss_pred             -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh--------------------------Hh
Confidence             443332  56677777777776555556666665555    3444432111                          11


Q ss_pred             HHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038          231 EILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       231 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      ..+++|+.|++++|.+. .+|.++..+++|+.|++++|+|
T Consensus       238 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred             hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence            23455555555555554 3555555555555555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=6.6e-25  Score=184.61  Aligned_cols=249  Identities=17%  Similarity=0.152  Sum_probs=154.5

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      +.++.|++++|.+.+..+..   +++|++|++++|.+++..|..+.    .+++|++|++++|.++ .+|..+.  ++|+
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~  124 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA----PLVKLERLYLSKNQLK-ELPEKMP--KTLQ  124 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT----TCTTCCEEECCSSCCS-BCCSSCC--TTCC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhc----CCCCCCEEECCCCcCC-ccChhhc--cccc
Confidence            56788888888888766544   46788888888888764454444    4788888888888887 5555443  6788


Q ss_pred             EEEccCCcccccCCcccccCCCccEEEccCCcccc--ccCccccCCCCccEEecCC----------CCcccEEEeccCcc
Q 043038           85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG--TIPATLKNCTALESLDVER----------FSRMVVLNLRSNKF  152 (271)
Q Consensus        85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~--~~~~~~~~l~~L~~L~l~~----------~~~L~~L~l~~n~l  152 (271)
                      +|++++|.++...+..+..+++|+.+++++|.+..  ..+..+..+++|+.|++..          .++|+.|++++|.+
T Consensus       125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l  204 (330)
T 1xku_A          125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI  204 (330)
T ss_dssp             EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCC
T ss_pred             EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcC
Confidence            88888888875555667778888888888887752  4455667777777777622          25677888888877


Q ss_pred             CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceec--cccch
Q 043038          153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV--SREEV  226 (271)
Q Consensus       153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  226 (271)
                      ++..+..+..+++|+.|++++|.+++..+..+..++.|+.    .|.+...     |..+. ....+..+.+.  ....+
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----p~~l~-~l~~L~~L~l~~N~i~~~  278 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-----PGGLA-DHKYIQVVYLHNNNISAI  278 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-----CTTTT-TCSSCCEEECCSSCCCCC
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-----Chhhc-cCCCcCEEECCCCcCCcc
Confidence            7666677777777888888888777655556666666665    4444432     11110 00001111110  00000


Q ss_pred             -hhHH------HHHhhHhhhhhcCCcccc--cccHhhhccCCCCEEEccCCC
Q 043038          227 -VEYN------EILNLVMVTIVSRNDLLK--NVPLEVRNLKATQSLNFSHNT  269 (271)
Q Consensus       227 -~~~~------~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~  269 (271)
                       ...+      ...+.++.+++++|.+..  ..|..|..++.++.+++++|+
T Consensus       279 ~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence             0000      123456667777776642  345666777777777777764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=4.1e-25  Score=200.67  Aligned_cols=113  Identities=21%  Similarity=0.162  Sum_probs=78.1

Q ss_pred             CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS   79 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   79 (271)
                      +|+++++|++|++++|.+.+..|.+   +++|++|++++|.++...+..    |.++++|++|++++|.++...+..|++
T Consensus        71 ~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~----f~~L~~L~~L~Ls~N~l~~l~~~~~~~  146 (635)
T 4g8a_A           71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA----FSGLSSLQKLVAVETNLASLENFPIGH  146 (635)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG----GTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred             HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH----hcCCCCCCEEECCCCcCCCCChhhhhc
Confidence            4677777777777777777655544   357777777777776533322    334777888888888777555556777


Q ss_pred             CCCCCEEEccCCccccc-CCcccccCCCccEEEccCCcccc
Q 043038           80 DQNLKILKLSNNKFIGN-LPNSFGSLAFLVWLDLGKNRLFG  119 (271)
Q Consensus        80 l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n~l~~  119 (271)
                      +++|++|++++|.++.. .|..+..+++|+.|++++|.+++
T Consensus       147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            78888888888877632 45666777788888887777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=3.3e-25  Score=197.42  Aligned_cols=43  Identities=21%  Similarity=0.143  Sum_probs=26.2

Q ss_pred             hHHHHHhhHhhhhhcCCcccccccHh-hhccCCCCEEEccCCCC
Q 043038          228 EYNEILNLVMVTIVSRNDLLKNVPLE-VRNLKATQSLNFSHNTF  270 (271)
Q Consensus       228 ~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~i  270 (271)
                      ..++.+++|+.|++++|.+.+.+|.. +..+++|++|++++|++
T Consensus       368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l  411 (520)
T 2z7x_B          368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL  411 (520)
T ss_dssp             HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCC
T ss_pred             HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCC
Confidence            33455666777777777766545543 55666666666666655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.93  E-value=3.5e-25  Score=203.22  Aligned_cols=254  Identities=21%  Similarity=0.147  Sum_probs=144.3

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      +++++|++++|.+.+..+..   +++|++|++++|.+++..|..+..    ++.|++|++++|.++...+.+|.++++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  100 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQK----LPMLKVLNLQHNELSQLSDKTFAFCTNLT  100 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHH----CTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhc----ccCcCEEECCCCccCccChhhhccCCCCC
Confidence            45666666666666555443   346666666666666544544443    66666666666666633333566666666


Q ss_pred             EEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecC---------------CCCcccEEEecc
Q 043038           85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVE---------------RFSRMVVLNLRS  149 (271)
Q Consensus        85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~---------------~~~~L~~L~l~~  149 (271)
                      +|++++|.+++..+..|..+++|+.|++++|.+.+..|..+..+++|+.|++.               .+++|+.|++++
T Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            66666666664444556666666666666666655555555566666666551               124555556655


Q ss_pred             CccCCCCc---------------------------------------------------hhhhcCcc--ccEEeccCCcc
Q 043038          150 NKFHGPLP---------------------------------------------------TRFCDLAI--LQILDIADNNL  176 (271)
Q Consensus       150 n~l~~~~~---------------------------------------------------~~~~~l~~--L~~L~l~~n~l  176 (271)
                      |.+++..|                                                   ..+..++.  |+.|++++|.+
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            55544333                                                   33333332  66666666666


Q ss_pred             ceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceecc--cc------chh----hHHHHHhhHhhhh
Q 043038          177 SGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVS--RE------EVV----EYNEILNLVMVTI  240 (271)
Q Consensus       177 ~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~----~~~~~~~~L~~L~  240 (271)
                      ++..+..+..++.|+.    .|.+.+.....+.     ....+..+.+..  ..      .++    ..++.+++|+.|+
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~  335 (680)
T 1ziw_A          261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-----GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN  335 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBSEECTTTTT-----TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred             CccCcccccCcccccEeeCCCCccCccChhhhc-----CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence            6555555555555555    3444332111111     111111111110  00      111    1335678899999


Q ss_pred             hcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038          241 VSRNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       241 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      +++|.+.+..+..|..+++|++|++++|.+
T Consensus       336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~  365 (680)
T 1ziw_A          336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFT  365 (680)
T ss_dssp             CCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred             CCCCccCCCChhHhccccCCcEEECCCCch
Confidence            999998887788888899999988888753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.9e-25  Score=198.90  Aligned_cols=85  Identities=25%  Similarity=0.294  Sum_probs=63.9

Q ss_pred             CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCC-CCCcccc
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG-ELPDCWM   78 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~   78 (271)
                      +|+++++|++|++++|.+.+..|..   +++|++|++++|.++. +|..      .+++|++|++++|.+++ ..|..|+
T Consensus        40 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~------~l~~L~~L~L~~N~l~~~~~p~~~~  112 (520)
T 2z7x_B           40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH------PTVNLKHLDLSFNAFDALPICKEFG  112 (520)
T ss_dssp             HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC------CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred             hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc------ccCCccEEeccCCccccccchhhhc
Confidence            3677888888888888888776655   4688888888888874 5543      37788888888888875 3567788


Q ss_pred             CCCCCCEEEccCCccc
Q 043038           79 SDQNLKILKLSNNKFI   94 (271)
Q Consensus        79 ~l~~L~~L~l~~n~~~   94 (271)
                      .+++|++|++++|.++
T Consensus       113 ~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B          113 NMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             GCTTCCEEEEEESSCC
T ss_pred             cCCcceEEEecCcccc
Confidence            8888888888777764

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=2.2e-24  Score=182.47  Aligned_cols=246  Identities=21%  Similarity=0.317  Sum_probs=120.5

Q ss_pred             CCccCCCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038            2 PNLTKFTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD   80 (271)
Q Consensus         2 ~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l   80 (271)
                      |+++.+++|++|++++|.+.+..+- .+++|++|++++|.++. ++     .+..+++|++|++++|.++ ..+. +..+
T Consensus        60 ~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~-----~~~~l~~L~~L~l~~n~i~-~~~~-~~~l  131 (347)
T 4fmz_A           60 QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-IS-----ALQNLTNLRELYLNEDNIS-DISP-LANL  131 (347)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCSEEECTTSCCC-CCGG-GTTC
T ss_pred             hhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-ch-----HHcCCCcCCEEECcCCccc-Cchh-hccC
Confidence            4566677777777777766654331 14567777777776654 22     2334666777777766665 2332 5555


Q ss_pred             CCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------------------------
Q 043038           81 QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------------------------  136 (271)
Q Consensus        81 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------------------------  136 (271)
                      ++|++|++++|...... ..+..+++|+.+++++|.+.+ .+. +..+++|+.|++                        
T Consensus       132 ~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~  208 (347)
T 4fmz_A          132 TKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKD-VTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYV  208 (347)
T ss_dssp             TTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred             CceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCC-chh-hccCCCCCEEEccCCcccccccccCCCccceeeccc
Confidence            66666666665433122 224444555555555544442 111 334444444444                        


Q ss_pred             ---------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccc
Q 043038          137 ---------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQH  203 (271)
Q Consensus       137 ---------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~  203 (271)
                               ..+++|+.|++++|.+++. +. +..+++|+.|++++|.+++ + ..+..++.|+.    .|.+.+.    
T Consensus       209 n~l~~~~~~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~----  280 (347)
T 4fmz_A          209 NQITDITPVANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI----  280 (347)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC----
T ss_pred             CCCCCCchhhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC----
Confidence                     2233455555555555422 22 4445555555555555542 2 23344444443    3333332    


Q ss_pred             cccccchhhhhhhhceec---cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          204 LHVPLDVDVILMEKASVV---SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                       +.  ......+..+.+.   .....+..++.+++|+.|++++|.+.+..|  +..+++|+.|++++|.|+
T Consensus       281 -~~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          281 -SV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             -GG--GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             -hh--hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence             00  0011111111111   122334445566677777777777665434  666777777777777664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=2.6e-25  Score=208.64  Aligned_cols=260  Identities=17%  Similarity=0.146  Sum_probs=172.2

Q ss_pred             CccCCCcccEEECcCCCCCCCc-ccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCcc--
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLL-PLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDC--   76 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~-~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--   76 (271)
                      +|+++++|++|++++|...+.+ |..   +++|++|++++|.+.+..|..+    .++++|++|++++|.+++..+..  
T Consensus        43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~Ls~n~l~~~~~~~~~  118 (844)
T 3j0a_A           43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF----QGLFHLFELRLYFCGLSDAVLKDGY  118 (844)
T ss_dssp             SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS----CSCSSCCCEECTTCCCSSCCSTTCC
T ss_pred             HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc----cCCcccCEeeCcCCCCCcccccCcc
Confidence            5788899999999998666555 443   4688999999998876545444    45888999999999888655554  


Q ss_pred             ccCCCCCCEEEccCCcccccCC-cccccCCCccEEEccCCccccccCccccCC--CCccEEecC-------------CCC
Q 043038           77 WMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNRLFGTIPATLKNC--TALESLDVE-------------RFS  140 (271)
Q Consensus        77 ~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l--~~L~~L~l~-------------~~~  140 (271)
                      |..+++|++|++++|.+++..+ ..|..+++|+.|++++|.+.+..+..+..+  ++|+.|++.             .++
T Consensus       119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~  198 (844)
T 3j0a_A          119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM  198 (844)
T ss_dssp             CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSS
T ss_pred             ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcC
Confidence            8888899999999998875544 568888999999999988876666666655  566666551             112


Q ss_pred             c------ccEEEeccCccCCCCchhhhc--------------------------------------CccccEEeccCCcc
Q 043038          141 R------MVVLNLRSNKFHGPLPTRFCD--------------------------------------LAILQILDIADNNL  176 (271)
Q Consensus       141 ~------L~~L~l~~n~l~~~~~~~~~~--------------------------------------l~~L~~L~l~~n~l  176 (271)
                      +      |+.|++++|.+++..+..+..                                      .++|+.|++++|.+
T Consensus       199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l  278 (844)
T 3j0a_A          199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV  278 (844)
T ss_dssp             CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred             CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence            2      677777777665444333221                                      14577777777777


Q ss_pred             ceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceec---cccchhhHHHHHhhHhhhhhcCCccccc
Q 043038          177 SGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV---SREEVVEYNEILNLVMVTIVSRNDLLKN  249 (271)
Q Consensus       177 ~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~  249 (271)
                      .+..+..+..++.|+.    .|.+.+.....+.     ....++.+.+.   .....+..+..+++|+.|++++|.+.+.
T Consensus       279 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~  353 (844)
T 3j0a_A          279 FSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-----GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII  353 (844)
T ss_dssp             CEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-----TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCC
T ss_pred             cccChhhhhcCCCCCEEECCCCcCCCCChHHhc-----CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCcc
Confidence            6666666666666665    4555443221111     11111111111   1112233345677888888888888766


Q ss_pred             ccHhhhccCCCCEEEccCCCCC
Q 043038          250 VPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       250 ~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      .+..|..+++|+.|++++|.++
T Consensus       354 ~~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          354 QDQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             CSSCSCSCCCCCEEEEETCCSC
T ss_pred             ChhhhcCCCCCCEEECCCCCCC
Confidence            6667888888888888888764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=5.4e-25  Score=205.14  Aligned_cols=254  Identities=17%  Similarity=0.189  Sum_probs=156.6

Q ss_pred             CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCc-ccc-ccchhhhh---hccCCCcccEEEccCcccCCCCCc--
Q 043038            6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNS-FLG-SISHFLCD---KINETKRLEALKLNDNYLQGELPD--   75 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~-~~~-~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~--   75 (271)
                      ++++|++|++++|.+.+.+|..   +++|+.|++++|. +++ .+|..+..   .+..+++|+.|++++|.++ .+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            8888999999999888888865   4688889998887 776 56665543   2234557788888888777 6776  


Q ss_pred             cccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCC-ccEEecCC----------------
Q 043038           76 CWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTA-LESLDVER----------------  138 (271)
Q Consensus        76 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~-L~~L~l~~----------------  138 (271)
                      .|..+++|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |+.|++..                
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~  644 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY  644 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSS
T ss_pred             hhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccC
Confidence            7777777777777777777 556 6666777777777777766 56666666666 66666511                


Q ss_pred             ---------------------------CCcccEEEeccCccCCCCchh-hhcCccccEEeccCCccceecCcccccc---
Q 043038          139 ---------------------------FSRMVVLNLRSNKFHGPLPTR-FCDLAILQILDIADNNLSGAIPNYINNV---  187 (271)
Q Consensus       139 ---------------------------~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~---  187 (271)
                                                 .++|+.|++++|.++ .+|.. +..+++|+.|++++|+++ .+|..+...   
T Consensus       645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~  722 (876)
T 4ecn_A          645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG  722 (876)
T ss_dssp             CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS
T ss_pred             CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc
Confidence                                       114455555555554 23333 335566666666666665 444433221   


Q ss_pred             -----cCCcc----ccccccccccccccccc-hhhhhhhhceec--cccchhhHHHHHhhHhhhhhcC------Cccccc
Q 043038          188 -----TGMVT----TNSFSRSAQQHLHVPLD-VDVILMEKASVV--SREEVVEYNEILNLVMVTIVSR------NDLLKN  249 (271)
Q Consensus       188 -----~~L~~----~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~L~~------n~l~~~  249 (271)
                           +.|+.    .|.+..     +|..+. .....+..+.+.  ....++..+..+++|+.|++++      |.+.+.
T Consensus       723 ~l~nl~~L~~L~Ls~N~L~~-----lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~  797 (876)
T 4ecn_A          723 NYKNTYLLTTIDLRFNKLTS-----LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ  797 (876)
T ss_dssp             CCTTGGGCCEEECCSSCCCC-----CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred             cccccCCccEEECCCCCCcc-----chHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccccc
Confidence                 13333    344443     222211 111122222221  1222444445677778887765      666667


Q ss_pred             ccHhhhccCCCCEEEccCCCC
Q 043038          250 VPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       250 ~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      +|..|..+++|+.|++++|+|
T Consensus       798 ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          798 WPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             CCTTGGGCSSCCEEECCSSCC
T ss_pred             ChHHHhcCCCCCEEECCCCCC
Confidence            787888888888888888776

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=4.2e-25  Score=197.86  Aligned_cols=148  Identities=22%  Similarity=0.224  Sum_probs=98.8

Q ss_pred             CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCC-CCCcccc
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG-ELPDCWM   78 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~   78 (271)
                      +|+++++|++|++++|.+.+..|..   +++|++|++++|.+++..+..+.    ++++|++|++++|.++. ..|..|.
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~  120 (549)
T 2z81_A           45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG----PLSSLKYLNLMGNPYQTLGVTSLFP  120 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT----TCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred             hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc----cCCCCcEEECCCCcccccchhhhhh
Confidence            3666777777777777776655544   34677777777777654333333    37777777777777764 2455667


Q ss_pred             CCCCCCEEEccCCc-ccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccE
Q 043038           79 SDQNLKILKLSNNK-FIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVV  144 (271)
Q Consensus        79 ~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~  144 (271)
                      .+++|++|++++|. ++...+..+..+++|+.|++++|.+.+..|..+..+++|+.|++             +.+++|++
T Consensus       121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  200 (549)
T 2z81_A          121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY  200 (549)
T ss_dssp             TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSE
T ss_pred             ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccE
Confidence            77777777777776 33223346777777777777777777666777777777777765             23677888


Q ss_pred             EEeccCccCC
Q 043038          145 LNLRSNKFHG  154 (271)
Q Consensus       145 L~l~~n~l~~  154 (271)
                      |++++|.+++
T Consensus       201 L~L~~n~l~~  210 (549)
T 2z81_A          201 LELRDTNLAR  210 (549)
T ss_dssp             EEEESCBCTT
T ss_pred             EEccCCcccc
Confidence            8888887765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=4.2e-24  Score=180.75  Aligned_cols=225  Identities=17%  Similarity=0.271  Sum_probs=135.9

Q ss_pred             ccCCCcccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhh-------------------hccCCCcccEE
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCD-------------------KINETKRLEAL   62 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~-------------------~~~~~~~L~~L   62 (271)
                      ++++++|++|++++|.+... +..  +++|++|++++|.++. ++. +..                   .+..+++|++|
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L  160 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL  160 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred             hhcCCcCCEEEccCCcccCc-hHHcCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence            55566666666666666542 221  3466666666666554 221 111                   12235555555


Q ss_pred             EccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------
Q 043038           63 KLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------  136 (271)
Q Consensus        63 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------  136 (271)
                      ++++|.++. .+. +..+++|++|++++|.++. .+. +..+++|+.+++++|.+.+. +. +..+++|+.|++      
T Consensus       161 ~l~~~~~~~-~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l~~n~l~  234 (347)
T 4fmz_A          161 TVTESKVKD-VTP-IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKIGNNKIT  234 (347)
T ss_dssp             ECCSSCCCC-CGG-GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred             EecCCCcCC-chh-hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEccCCccC
Confidence            555555552 222 5566666666666666652 322 56667777777777776632 22 677888999988      


Q ss_pred             -----CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccc
Q 043038          137 -----ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVP  207 (271)
Q Consensus       137 -----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~  207 (271)
                           ..+++|+.|++++|.+++ + +.+..+++|+.|++++|.+++ + ..+..++.|+.    .|.+.+.....+.  
T Consensus       235 ~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~--  308 (347)
T 4fmz_A          235 DLSPLANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIG--  308 (347)
T ss_dssp             CCGGGTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHH--
T ss_pred             CCcchhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhh--
Confidence                 456789999999999985 3 568899999999999999984 4 35677777776    5656553222111  


Q ss_pred             cchhhhhhhhceec--cccchhhHHHHHhhHhhhhhcCCccc
Q 043038          208 LDVDVILMEKASVV--SREEVVEYNEILNLVMVTIVSRNDLL  247 (271)
Q Consensus       208 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L~L~~n~l~  247 (271)
                         ....+..+.+.  .....+. ...+++|+.|++++|.+.
T Consensus       309 ---~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          309 ---GLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ---TCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             ---ccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence               11222222222  1222222 467899999999999874

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=5.2e-25  Score=199.54  Aligned_cols=251  Identities=15%  Similarity=0.099  Sum_probs=133.9

Q ss_pred             ccCCCcccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ   81 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   81 (271)
                      +..+++|+.|++++|.+... |..  +++|+.|++++|.+ +.+|..      .++.|++|++++|......  .+..++
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l-~~l~~~~~L~~L~l~~n~l-~~lp~~------~l~~L~~L~l~~n~~~~~~--~~~~l~  350 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYL-EDVPKHFKWQSLSIIRCQL-KQFPTL------DLPFLKSLTLTMNKGSISF--KKVALP  350 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCC-CCCCTTCCCSEEEEESCCC-SSCCCC------CCSSCCEEEEESCSSCEEC--CCCCCT
T ss_pred             cccCCCCCEEEecCccchhh-hhccccccCCEEEcccccC-cccccC------CCCccceeeccCCcCccch--hhccCC
Confidence            55566666677766666432 211  34666666666666 334421      2555555665555332111  344555


Q ss_pred             CCCEEEccCCccccc--CCcccccCCCccEEEccCCccccccCccccCCCCccEEec--------------CCCCcccEE
Q 043038           82 NLKILKLSNNKFIGN--LPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV--------------ERFSRMVVL  145 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~--~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l--------------~~~~~L~~L  145 (271)
                      +|++|++++|.+++.  .+..+..+++|+.+++++|.+. .+|..+..+++|+.|++              ..+++|+.|
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL  429 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred             CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence            555555555555432  2444555555555555555554 34444555555555554              223455566


Q ss_pred             EeccCccCCCCchhhhcCccccEEeccCCccce-ecCcccccccCCcc----ccccccccccccccccchhhhhhhhcee
Q 043038          146 NLRSNKFHGPLPTRFCDLAILQILDIADNNLSG-AIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASV  220 (271)
Q Consensus       146 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (271)
                      ++++|.+++..|..+..+++|+.|++++|.+++ ..|..+..++.|+.    .|.+.+.....+.     ....+..+.+
T Consensus       430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L  504 (606)
T 3vq2_A          430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD-----TLHRLQLLNM  504 (606)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-----TCTTCCEEEC
T ss_pred             ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc-----ccccCCEEEC
Confidence            666666655555555556666666666666554 24555555555554    3444332111110     1111111111


Q ss_pred             c---cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccC-CCCEEEccCCCCC
Q 043038          221 V---SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLK-ATQSLNFSHNTFT  271 (271)
Q Consensus       221 ~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~i~  271 (271)
                      .   ..+..+..+..+++|+.|++++|++. .+|..+..++ +|+.+++++|.++
T Consensus       505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA  558 (606)
T ss_dssp             CSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCC
T ss_pred             CCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcc
Confidence            1   11222344456788888888888886 4777788886 5888888888763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.92  E-value=3.6e-24  Score=196.50  Aligned_cols=250  Identities=14%  Similarity=0.139  Sum_probs=182.0

Q ss_pred             ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038           10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS   89 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   89 (271)
                      -+.++++++.+...++...+++++|++++|.+++..+..+.    ++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus         6 ~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~   81 (680)
T 1ziw_A            6 HEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFT----RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ   81 (680)
T ss_dssp             SSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGG----GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred             CCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHh----CCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence            36789999998765444456999999999999875544454    48999999999999998888999999999999999


Q ss_pred             CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccEEEeccCccCCCC
Q 043038           90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLRSNKFHGPL  156 (271)
Q Consensus        90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L~l~~n~l~~~~  156 (271)
                      +|.++...+..|..+++|+.|++++|.+.+..|..+..+++|+.|++             ..+++|+.|++++|.+++..
T Consensus        82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  161 (680)
T 1ziw_A           82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK  161 (680)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred             CCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence            99999555557999999999999999998665678899999999998             35678999999999999777


Q ss_pred             chhhh--cCccccEEeccCCccceecCcccccccCCcc-------------------------------ccccccccccc
Q 043038          157 PTRFC--DLAILQILDIADNNLSGAIPNYINNVTGMVT-------------------------------TNSFSRSAQQH  203 (271)
Q Consensus       157 ~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-------------------------------~n~~~~~~~~~  203 (271)
                      +..+.  .+++|+.|++++|.+++..|..+..+..++.                               .+.+.+.....
T Consensus       162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~  241 (680)
T 1ziw_A          162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT  241 (680)
T ss_dssp             HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred             HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence            76665  4589999999999998777777665554432                               22222211111


Q ss_pred             cccccchhhhh--hhhceec---cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCC
Q 043038          204 LHVPLDVDVIL--MEKASVV---SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN  268 (271)
Q Consensus       204 ~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  268 (271)
                      +     .....  +..+++.   .....+..++.+++|++|++++|.+.+..|..|..+++|+.|++++|
T Consensus       242 ~-----~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~  306 (680)
T 1ziw_A          242 F-----LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS  306 (680)
T ss_dssp             T-----GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred             h-----hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence            1     11111  2222221   12222344566778888888888777666666666666666655543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=1.1e-24  Score=187.24  Aligned_cols=249  Identities=15%  Similarity=0.124  Sum_probs=161.6

Q ss_pred             CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038            6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN   82 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   82 (271)
                      .+.+++++++++|.+....+..   +++|++|++++|.++...+..+    ..+++|++|++++|.++...|..|..+++
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF----AYAHTIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT----TTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhc----cCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence            4678999999999887654433   6899999999999876444344    44899999999999999777788899999


Q ss_pred             CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec----------CCCCcccEEEeccCcc
Q 043038           83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----------ERFSRMVVLNLRSNKF  152 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----------~~~~~L~~L~l~~n~l  152 (271)
                      |++|++++|.++...+..|..+++|+.|++++|.+.+..+..+..+++|+.|++          ..+++|+.|++++|.+
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccc
Confidence            999999999998444445688999999999999998666677888888888887          3456677777777766


Q ss_pred             CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccchhhhhhhhceec---cccchhh
Q 043038          153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVV---SREEVVE  228 (271)
Q Consensus       153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  228 (271)
                      ++     +.....|+.|++++|.+.........++..|.. .|.+.+..       .......+..+++.   .....+.
T Consensus       199 ~~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-------~l~~l~~L~~L~Ls~n~l~~~~~~  266 (390)
T 3o6n_A          199 ST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-------WLLNYPGLVEVDLSYNELEKIMYH  266 (390)
T ss_dssp             SE-----EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCCEEESG
T ss_pred             cc-----cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-------HHcCCCCccEEECCCCcCCCcChh
Confidence            52     122345666666666665332222222222222 33333320       00001111111111   1111233


Q ss_pred             HHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          229 YNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       229 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      .+..+++|+.|++++|.+.+ +|..+..+++|++|++++|+++
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~  308 (390)
T 3o6n_A          267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL  308 (390)
T ss_dssp             GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred             HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce
Confidence            33456666777777776654 5555566677777777777653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=1.7e-25  Score=208.49  Aligned_cols=129  Identities=26%  Similarity=0.389  Sum_probs=77.6

Q ss_pred             CCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCc-ccc-cCCcccccCC-------CccEEEccCCccccccCc--
Q 043038           55 ETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNK-FIG-NLPNSFGSLA-------FLVWLDLGKNRLFGTIPA--  123 (271)
Q Consensus        55 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~l~-------~L~~l~l~~n~l~~~~~~--  123 (271)
                      ++++|++|++++|.+.+.+|..|..+++|+.|++++|+ +++ .+|..+..++       +|+.|++++|.+. .+|.  
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~  567 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA  567 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence            36666666666666655666666666666666666665 554 4454444333       6666666666666 5555  


Q ss_pred             cccCCCCccEEec-----------CCCCcccEEEeccCccCCCCchhhhcCcc-ccEEeccCCccceecCccccc
Q 043038          124 TLKNCTALESLDV-----------ERFSRMVVLNLRSNKFHGPLPTRFCDLAI-LQILDIADNNLSGAIPNYINN  186 (271)
Q Consensus       124 ~~~~l~~L~~L~l-----------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~  186 (271)
                      .+..+++|+.|++           ..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..
T Consensus       568 ~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~  640 (876)
T 4ecn_A          568 SLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA  640 (876)
T ss_dssp             HHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred             hhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence            5666666666655           23455666666666666 55656666665 666666666665 55555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=1e-24  Score=183.58  Aligned_cols=248  Identities=18%  Similarity=0.177  Sum_probs=147.1

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      ++++.|++++|.+.+..|..   +++|++|++++|.+++..|..+.    ++++|++|++++|.++ .+|..+.  ++|+
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~-~l~~~~~--~~L~  126 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFS----PLRKLQKLYISKNHLV-EIPPNLP--SSLV  126 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGST----TCTTCCEEECCSSCCC-SCCSSCC--TTCC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhh----CcCCCCEEECCCCcCC-ccCcccc--ccCC
Confidence            57888888888887665544   46888888888888764454443    4888888888888887 5555543  7888


Q ss_pred             EEEccCCcccccCCcccccCCCccEEEccCCcccc--ccCccccCCCCccEEecCC----------CCcccEEEeccCcc
Q 043038           85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG--TIPATLKNCTALESLDVER----------FSRMVVLNLRSNKF  152 (271)
Q Consensus        85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~--~~~~~~~~l~~L~~L~l~~----------~~~L~~L~l~~n~l  152 (271)
                      +|++++|.++...+..+..+++|+.+++++|.+..  ..+..+..+ +|+.+++..          .++|+.|++++|.+
T Consensus       127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKI  205 (332)
T ss_dssp             EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC
T ss_pred             EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcC
Confidence            88888888875555667788888888888887752  344455544 555555511          13566666666666


Q ss_pred             CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceec--cccch
Q 043038          153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV--SREEV  226 (271)
Q Consensus       153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  226 (271)
                      ++..+..+..+++|+.|++++|++++..+..+..++.|+.    .|.+...     |..+. ....+..+.+.  ....+
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----p~~l~-~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-----PAGLP-DLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC-----CTTGG-GCTTCCEEECCSSCCCBC
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec-----Chhhh-cCccCCEEECCCCCCCcc
Confidence            5544455555666666666666665444445555555544    3333321     11100 00011111110  00000


Q ss_pred             -hhHH------HHHhhHhhhhhcCCccc--ccccHhhhccCCCCEEEccCCC
Q 043038          227 -VEYN------EILNLVMVTIVSRNDLL--KNVPLEVRNLKATQSLNFSHNT  269 (271)
Q Consensus       227 -~~~~------~~~~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~  269 (271)
                       ...+      ...++++.+++++|.+.  +..|..|..++.|+.+++++|+
T Consensus       280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence             0000      11356778888888875  4567778888888888888875

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.92  E-value=1.2e-24  Score=204.19  Aligned_cols=258  Identities=16%  Similarity=0.120  Sum_probs=191.0

Q ss_pred             CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038            6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN   82 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   82 (271)
                      -.+++++||+++|.+.+..|..   +++|++|++++|...+.++   +..|.++++|++|++++|.++...|..|.++++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~---~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID---KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEEC---TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccC---HHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence            4578999999999999877766   5699999999996554442   334556999999999999999777999999999


Q ss_pred             CCEEEccCCcccccCCcc--cccCCCccEEEccCCccccccC-ccccCCCCccEEecCC-------------C--CcccE
Q 043038           83 LKILKLSNNKFIGNLPNS--FGSLAFLVWLDLGKNRLFGTIP-ATLKNCTALESLDVER-------------F--SRMVV  144 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~--~~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~L~l~~-------------~--~~L~~  144 (271)
                      |++|++++|.+++..+..  +..+++|+.|++++|.+.+..+ ..+..+++|+.|+++.             +  ++|+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            999999999998655544  8899999999999999986544 5789999999999822             1  67899


Q ss_pred             EEeccCccCCCCchhhhcCcc------ccEEeccCCccceecCcccccc-------------------------------
Q 043038          145 LNLRSNKFHGPLPTRFCDLAI------LQILDIADNNLSGAIPNYINNV-------------------------------  187 (271)
Q Consensus       145 L~l~~n~l~~~~~~~~~~l~~------L~~L~l~~n~l~~~~~~~~~~~-------------------------------  187 (271)
                      |+++.|.+++..|..+..+..      |+.|++++|.+.+..+..+...                               
T Consensus       179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~  258 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN  258 (844)
T ss_dssp             CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred             EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence            999999998877776665554      9999999998775555444321                               


Q ss_pred             -------cCCcc----ccccccccccccccccchhhhhhhhceec---cccchhhHHHHHhhHhhhhhcCCcccccccHh
Q 043038          188 -------TGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV---SREEVVEYNEILNLVMVTIVSRNDLLKNVPLE  253 (271)
Q Consensus       188 -------~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  253 (271)
                             +.++.    .|.+.+.     +.........+..+.+.   .....+..+..+++|+.|++++|.+.+..|..
T Consensus       259 ~f~~l~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  333 (844)
T 3j0a_A          259 TFAGLARSSVRHLDLSHGFVFSL-----NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN  333 (844)
T ss_dssp             TTTTTTTSCCCEEECTTCCCCEE-----CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred             hhhccccCCccEEECCCCccccc-----ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence                   11221    2222221     11111112222222222   22233455677889999999999998777889


Q ss_pred             hhccCCCCEEEccCCCCC
Q 043038          254 VRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       254 l~~l~~L~~L~l~~n~i~  271 (271)
                      |..+++|+.|++++|.|+
T Consensus       334 ~~~l~~L~~L~L~~N~i~  351 (844)
T 3j0a_A          334 FYGLPKVAYIDLQKNHIA  351 (844)
T ss_dssp             CSSCTTCCEEECCSCCCC
T ss_pred             hcCCCCCCEEECCCCCCC
Confidence            999999999999999874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=1.1e-24  Score=195.75  Aligned_cols=137  Identities=20%  Similarity=0.185  Sum_probs=89.4

Q ss_pred             cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038            9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL   88 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   88 (271)
                      ..+++++++|.+.+.++...+++++|++++|.+++..+..+.    ++++|++|++++|.+++..|.+|.++++|++|++
T Consensus        32 ~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDIS----FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTT----TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhc----cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            346777777777754333346777777777777664333333    3777777777777777555677777777777777


Q ss_pred             cCCcccccCCcccccCCCccEEEccCCcccc-ccCccccCCCCccEEec----------CCCCcc--cEEEeccCcc
Q 043038           89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG-TIPATLKNCTALESLDV----------ERFSRM--VVLNLRSNKF  152 (271)
Q Consensus        89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~-~~~~~~~~l~~L~~L~l----------~~~~~L--~~L~l~~n~l  152 (271)
                      ++|+++ .+|..  .+++|+.|++++|.+.+ ..|..+..+++|+.|++          ..+++|  +.|++++|.+
T Consensus       108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred             CCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence            777776 44444  56777777777777764 23456777777777776          222334  7777777666

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=4.4e-24  Score=179.47  Aligned_cols=206  Identities=20%  Similarity=0.220  Sum_probs=169.5

Q ss_pred             CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCcc
Q 043038           29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLV  108 (271)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  108 (271)
                      .+++.|++++|.++. +|..+..    +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus        81 ~~l~~L~L~~n~l~~-lp~~l~~----l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~  153 (328)
T 4fcg_A           81 PGRVALELRSVPLPQ-FPDQAFR----LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLR  153 (328)
T ss_dssp             TTCCEEEEESSCCSS-CCSCGGG----GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred             cceeEEEccCCCchh-cChhhhh----CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence            689999999999984 6655544    899999999999999 88999999999999999999999 7888899999999


Q ss_pred             EEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCccccccc
Q 043038          109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT  188 (271)
Q Consensus       109 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~  188 (271)
                      .|++++|...+.+|..+....-...  +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.++ .+|..+..++
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~--~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~  229 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGE--HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLP  229 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCC--EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCT
T ss_pred             EEECCCCCCccccChhHhhccchhh--hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCC
Confidence            9999998887788876654111111  134567788889999998 78889999999999999999998 5777788888


Q ss_pred             CCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEE
Q 043038          189 GMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLN  264 (271)
Q Consensus       189 ~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  264 (271)
                      .|+.    .|.+.+.    +|                      ..++.+++|+.|++++|.+.+.+|.++..+++|+.|+
T Consensus       230 ~L~~L~Ls~n~~~~~----~p----------------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~  283 (328)
T 4fcg_A          230 KLEELDLRGCTALRN----YP----------------------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD  283 (328)
T ss_dssp             TCCEEECTTCTTCCB----CC----------------------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred             CCCEEECcCCcchhh----hH----------------------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence            8877    3444442    22                      2224678899999999999899999999999999999


Q ss_pred             ccCCCCC
Q 043038          265 FSHNTFT  271 (271)
Q Consensus       265 l~~n~i~  271 (271)
                      +++|++.
T Consensus       284 L~~n~~~  290 (328)
T 4fcg_A          284 LRGCVNL  290 (328)
T ss_dssp             CTTCTTC
T ss_pred             CCCCCch
Confidence            9999763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=1.7e-24  Score=194.55  Aligned_cols=86  Identities=24%  Similarity=0.265  Sum_probs=69.4

Q ss_pred             CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCC-CCCcccc
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG-ELPDCWM   78 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~   78 (271)
                      +|+++++|++|++++|.+.+..|..   +++|++|++++|.++. +|..      .+++|++|++++|.++. ..|..|.
T Consensus        71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~------~l~~L~~L~Ls~N~l~~l~~p~~~~  143 (562)
T 3a79_B           71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC------PMASLRHLDLSFNDFDVLPVCKEFG  143 (562)
T ss_dssp             GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC------CCTTCSEEECCSSCCSBCCCCGGGG
T ss_pred             hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc------ccccCCEEECCCCCccccCchHhhc
Confidence            5788899999999999998776765   4689999999999874 5544      37889999999999874 2457888


Q ss_pred             CCCCCCEEEccCCcccc
Q 043038           79 SDQNLKILKLSNNKFIG   95 (271)
Q Consensus        79 ~l~~L~~L~l~~n~~~~   95 (271)
                      ++++|++|++++|+++.
T Consensus       144 ~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          144 NLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             GCTTCCEEEEECSBCCT
T ss_pred             ccCcccEEecCCCcccc
Confidence            88899999988888763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.6e-24  Score=194.76  Aligned_cols=249  Identities=15%  Similarity=0.126  Sum_probs=165.4

Q ss_pred             CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038            6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN   82 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   82 (271)
                      .+..++.+++++|.+...++..   +++|++|++++|.+++..+..+.    .+++|++|++++|.+++..|..|.++++
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~  124 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA----YAHTIQKLYMGFNAIRYLPPHVFQNVPL  124 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc----CCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence            4577899999999887655543   67999999999998875444444    4899999999999999777778899999


Q ss_pred             CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec----------CCCCcccEEEeccCcc
Q 043038           83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----------ERFSRMVVLNLRSNKF  152 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----------~~~~~L~~L~l~~n~l  152 (271)
                      |++|++++|.++...+..|..+++|+.|++++|.+.+..|..+..+++|+.|++          ..+++|+.|++++|.+
T Consensus       125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCC
T ss_pred             CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcc
Confidence            999999999998555555788999999999999998777777888888888887          3456777777777776


Q ss_pred             CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccchhhhhhhhceec---cccchhh
Q 043038          153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVV---SREEVVE  228 (271)
Q Consensus       153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  228 (271)
                      ++     +.....|+.|++++|.+....+....++..|.. .|.+.+..       .......+..+.+.   ..+..+.
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~-------~l~~l~~L~~L~Ls~N~l~~~~~~  272 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-------WLLNYPGLVEVDLSYNELEKIMYH  272 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCG-------GGGGCTTCSEEECCSSCCCEEESG
T ss_pred             cc-----ccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCCh-------hhccCCCCCEEECCCCccCCCCHH
Confidence            53     122345666666666665333222222332222 33333310       00001111111111   1112233


Q ss_pred             HHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          229 YNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       229 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      .++.+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++
T Consensus       273 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~  314 (597)
T 3oja_B          273 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL  314 (597)
T ss_dssp             GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred             HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence            34556667777777777654 5656666777777777777653

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.9e-23  Score=170.82  Aligned_cols=201  Identities=21%  Similarity=0.224  Sum_probs=154.3

Q ss_pred             cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038            9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL   88 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   88 (271)
                      ..+.++++++.+...+....++++.|++++|.++...+.    .|.++++|++|++++|.++...+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSK----AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTT----SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHH----HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            467899999999864433456899999999998863333    3445899999999999998555566788999999999


Q ss_pred             cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccE
Q 043038           89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI  168 (271)
Q Consensus        89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  168 (271)
                      ++|.++...+..+..+++|+.|++++|.+.+..+..+..++           +|++|++++|.+++..+..+..+++|+.
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  161 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-----------KLTYLSLGYNELQSLPKGVFDKLTSLKE  161 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-----------CCCEEECCCCcCCccCHhHccCCcccce
Confidence            99999866666778899999999999999855555555555           4556668999998666666888999999


Q ss_pred             EeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccc
Q 043038          169 LDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLK  248 (271)
Q Consensus       169 L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  248 (271)
                      |++++|++++..+..+..                                              +++|+.|++++|.+.+
T Consensus       162 L~L~~n~l~~~~~~~~~~----------------------------------------------l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          162 LRLYNNQLKRVPEGAFDK----------------------------------------------LTELKTLKLDNNQLKR  195 (270)
T ss_dssp             EECCSSCCSCCCTTTTTT----------------------------------------------CTTCCEEECCSSCCSC
T ss_pred             eEecCCcCcEeChhHhcc----------------------------------------------CCCcCEEECCCCcCCc
Confidence            999999987443333333                                              4456778888888776


Q ss_pred             cccHhhhccCCCCEEEccCCCC
Q 043038          249 NVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       249 ~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      ..+..+..+++|+.|++++|.+
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          196 VPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCHHHhccccCCCEEEecCCCe
Confidence            5555677788888888888765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=9.7e-24  Score=173.89  Aligned_cols=233  Identities=21%  Similarity=0.170  Sum_probs=165.6

Q ss_pred             CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcc-cCCCCCccccCCC
Q 043038            6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNY-LQGELPDCWMSDQ   81 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~   81 (271)
                      -.+++++|++++|.+.+..+..   +++|++|++++|.+++..+..+.    .+++|++|++++|. ++...+..|..++
T Consensus        30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~l~~n~~l~~~~~~~~~~l~  105 (285)
T 1ozn_A           30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT----GLALLEQLDLSDNAQLRSVDPATFHGLG  105 (285)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred             CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC----CccCCCEEeCCCCCCccccCHHHhcCCc
Confidence            3468999999999998766554   46899999999998875454444    48999999999997 7755688899999


Q ss_pred             CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccEEEec
Q 043038           82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLR  148 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L~l~  148 (271)
                      +|++|++++|.+++..+..+..+++|+.+++++|.+.+..+..+..+++|+.|++             ..+++|+.|+++
T Consensus       106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence            9999999999998777778888999999999999998554455777777777765             334566666777


Q ss_pred             cCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceecccc
Q 043038          149 SNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSRE  224 (271)
Q Consensus       149 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (271)
                      +|.+++..|..+..+++|+.|++++|.+++..+..+..++.|+.    .|.+...                         
T Consensus       186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~-------------------------  240 (285)
T 1ozn_A          186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD-------------------------  240 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS-------------------------
T ss_pred             CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC-------------------------
Confidence            77666555666666667777777777666443344555555544    3333321                         


Q ss_pred             chhhHHHHHhhHhhhhhcCCcccccccHhhhc--cCCCCEEEccCCC
Q 043038          225 EVVEYNEILNLVMVTIVSRNDLLKNVPLEVRN--LKATQSLNFSHNT  269 (271)
Q Consensus       225 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~l~~n~  269 (271)
                        ....+....++.+..+.+.+....|..+.+  +..++..++.+|.
T Consensus       241 --~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C~  285 (285)
T 1ozn_A          241 --CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGCA  285 (285)
T ss_dssp             --GGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC-
T ss_pred             --CCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccCC
Confidence              000122344566667777777677887754  6777777777763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=8.5e-24  Score=173.45  Aligned_cols=218  Identities=17%  Similarity=0.085  Sum_probs=161.5

Q ss_pred             EEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCC
Q 043038           12 FRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNN   91 (271)
Q Consensus        12 ~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   91 (271)
                      ..+..+..+...+....+++++|++++|.+++..+..+    .++++|++|++++|.++...+..|..+++|++|++++|
T Consensus        11 ~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTT----TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCccccCCCCCCCccEEECCCCcccccCHhHh----ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            45666666654333334579999999999886444333    44889999999999998666668889999999999999


Q ss_pred             cccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCC-CchhhhcCccccEEe
Q 043038           92 KFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGP-LPTRFCDLAILQILD  170 (271)
Q Consensus        92 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~  170 (271)
                      .++...+..+..+++|+.|++++|.+.+..+..+..++           +|++|++++|.+++. +|..+..+++|+.|+
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-----------~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~  155 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK-----------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  155 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT-----------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCC-----------CCCEEECcCCccceecCchhhccCCCCCEEE
Confidence            99877777888899999999999988754443454444           455666889998753 588899999999999


Q ss_pred             ccCCccceecCcccccccCCcc--------ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhc
Q 043038          171 IADNNLSGAIPNYINNVTGMVT--------TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVS  242 (271)
Q Consensus       171 l~~n~l~~~~~~~~~~~~~L~~--------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  242 (271)
                      +++|++++..+..+..+..+..        .|.+.+.....+                           ...+|+.|+++
T Consensus       156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~---------------------------~~~~L~~L~L~  208 (276)
T 2z62_A          156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF---------------------------KEIRLKELALD  208 (276)
T ss_dssp             CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS---------------------------CSCCEEEEECC
T ss_pred             CCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc---------------------------CCCcccEEECC
Confidence            9999998666666666655542        334433211111                           12368999999


Q ss_pred             CCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          243 RNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       243 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      +|.+.+..+..|..+++|+.|++++|.++
T Consensus       209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          209 TNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             SSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCceeecCHhHhcccccccEEEccCCccc
Confidence            99998765666799999999999999874

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=2e-23  Score=172.49  Aligned_cols=202  Identities=24%  Similarity=0.232  Sum_probs=161.6

Q ss_pred             ccCCCcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL   83 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L   83 (271)
                      ++++++++.++++++.+...++...++++.|++++|.+++..+..+.    .+++|++|++++|.++ .++.. ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~----~l~~L~~L~L~~n~l~-~~~~~-~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLM----PYTRLTQLNLDRAELT-KLQVD-GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGT----TCTTCCEEECTTSCCC-EEECC-SCCTTC
T ss_pred             ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhh----cCCCCCEEECCCCccC-cccCC-CCCCcC
Confidence            67889999999999999876555567999999999999875454444    5999999999999998 44443 788999


Q ss_pred             CEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcC
Q 043038           84 KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDL  163 (271)
Q Consensus        84 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l  163 (271)
                      ++|++++|+++ .+|..+..+++|+.|++++|.+++..+..+..+++           |+.|++++|.+++..+..|..+
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l  147 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE-----------LQELYLKGNELKTLPPGLLTPT  147 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-----------CCEEECTTSCCCCCCTTTTTTC
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC-----------CCEEECCCCCCCccChhhcccc
Confidence            99999999998 77878889999999999999998554456665554           5566699999987777778899


Q ss_pred             ccccEEeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcC
Q 043038          164 AILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSR  243 (271)
Q Consensus       164 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  243 (271)
                      ++|+.|++++|++++..+..+.                                              .+++|+.|++++
T Consensus       148 ~~L~~L~L~~N~l~~l~~~~~~----------------------------------------------~l~~L~~L~L~~  181 (290)
T 1p9a_G          148 PKLEKLSLANNNLTELPAGLLN----------------------------------------------GLENLDTLLLQE  181 (290)
T ss_dssp             TTCCEEECTTSCCSCCCTTTTT----------------------------------------------TCTTCCEEECCS
T ss_pred             cCCCEEECCCCcCCccCHHHhc----------------------------------------------CcCCCCEEECCC
Confidence            9999999999999833322223                                              344567788888


Q ss_pred             CcccccccHhhhccCCCCEEEccCCCC
Q 043038          244 NDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       244 n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      |.+. .+|..+..+++|+.+++++|.+
T Consensus       182 N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          182 NSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             SCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CcCC-ccChhhcccccCCeEEeCCCCc
Confidence            8886 4788888888888888888865

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=1.9e-25  Score=186.58  Aligned_cols=233  Identities=19%  Similarity=0.167  Sum_probs=157.5

Q ss_pred             cCCCcccEEECcCCCCCCCcccc-CCCccEEEccCCccc-cccchhhh---hhccCCCcccEEEccCcccCCCCCccc--
Q 043038            5 TKFTQLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFL-GSISHFLC---DKINETKRLEALKLNDNYLQGELPDCW--   77 (271)
Q Consensus         5 ~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~-~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~--   77 (271)
                      +..++|+.+++++|.+  .+|.. ...++.|++++|.++ ..+|....   ..+.++++|++|++++|.+++..|..+  
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            3455677777777777  44443 234777777777763 23443332   011136777777777777776666655  


Q ss_pred             cCCCCCCEEEccCCcccccCCcccccC-----CCccEEEccCCccccccCccccCCCCccEEec----------------
Q 043038           78 MSDQNLKILKLSNNKFIGNLPNSFGSL-----AFLVWLDLGKNRLFGTIPATLKNCTALESLDV----------------  136 (271)
Q Consensus        78 ~~l~~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----------------  136 (271)
                      ..+++|++|++++|++++. |..+..+     ++|+.|++++|.+.+..|..+..+++|+.|++                
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            6777777777777777754 6656555     77777777777777555567777777777776                


Q ss_pred             -CCCCcccEEEeccCccCCC--Cc-hhhhcCccccEEeccCCccceecC-cccccccCCcc----ccccccccccccccc
Q 043038          137 -ERFSRMVVLNLRSNKFHGP--LP-TRFCDLAILQILDIADNNLSGAIP-NYINNVTGMVT----TNSFSRSAQQHLHVP  207 (271)
Q Consensus       137 -~~~~~L~~L~l~~n~l~~~--~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~----~n~~~~~~~~~~~~~  207 (271)
                       ..+++|++|++++|.+++.  .+ ..+..+++|+.|++++|++++..| ..+..++.|+.    .|.+..     +|..
T Consensus       197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----ip~~  271 (312)
T 1wwl_A          197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-----VPKG  271 (312)
T ss_dssp             TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS-----CCSS
T ss_pred             hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh-----hhhh
Confidence             2456788888999998731  12 334567899999999999986553 34444556655    455553     2211


Q ss_pred             cchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          208 LDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                                            +.  ++|+.|++++|++.+. |. +..+++|+.|++++|.|+
T Consensus       272 ----------------------~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          272 ----------------------LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             ----------------------CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred             ----------------------cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence                                  01  6789999999999874 66 999999999999999985

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.90  E-value=7.9e-23  Score=179.76  Aligned_cols=164  Identities=24%  Similarity=0.347  Sum_probs=96.3

Q ss_pred             CCCccCCCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038            1 MPNLTKFTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS   79 (271)
Q Consensus         1 ~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   79 (271)
                      +|.+..+++|++|++++|.+.+..+- .+++|++|++++|.+.+..+      +.++++|++|++++|.++. .+. +..
T Consensus        61 l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~l~~L~~L~L~~n~l~~-~~~-~~~  132 (466)
T 1o6v_A           61 IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP------LANLTNLTGLTLFNNQITD-IDP-LKN  132 (466)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG------GTTCTTCCEEECCSSCCCC-CGG-GTT
T ss_pred             CcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh------hcCCCCCCEEECCCCCCCC-ChH-HcC
Confidence            35677788888888888888766542 15678888888888775322      3347778888888877773 333 667


Q ss_pred             CCCCCEEEccCCcccccCCc--------------------ccccCCCccEEEccCCccccccCccccCCCCccEEec---
Q 043038           80 DQNLKILKLSNNKFIGNLPN--------------------SFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV---  136 (271)
Q Consensus        80 l~~L~~L~l~~n~~~~~~~~--------------------~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l---  136 (271)
                      +++|++|++++|.+.+ .+.                    .+..+++|+.+++++|.+.+ + ..+..+++|+.|++   
T Consensus       133 l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n  209 (466)
T 1o6v_A          133 LTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLTNLESLIATNN  209 (466)
T ss_dssp             CTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred             CCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-C-hhhccCCCCCEEEecCC
Confidence            7777777777776653 221                    13344555555555555542 2 22444555555554   


Q ss_pred             --------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038          137 --------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       137 --------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                              ..+++|+.|++++|.+++ + ..+..+++|+.|++++|.+.
T Consensus       210 ~l~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          210 QISDITPLGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             CCCCCGGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC
T ss_pred             cccccccccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccc
Confidence                    223445555555555542 1 23444555555555555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=1.5e-23  Score=188.57  Aligned_cols=124  Identities=20%  Similarity=0.160  Sum_probs=62.5

Q ss_pred             ccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD   80 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l   80 (271)
                      |.++++|++|++++|.+.+..|..   +++|++|++++|.++...|..+.    ++++|++|++++|.++...+..|..+
T Consensus        48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~l~~~~~~~l  123 (570)
T 2z63_A           48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS----GLSSLQKLVAVETNLASLENFPIGHL  123 (570)
T ss_dssp             TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT----TCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred             hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc----CccccccccccccccccCCCcccccc
Confidence            455555555555555555443333   23555555555555442222222    35555555555555553333345555


Q ss_pred             CCCCEEEccCCcccc-cCCcccccCCCccEEEccCCccccccCccccCCCCc
Q 043038           81 QNLKILKLSNNKFIG-NLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTAL  131 (271)
Q Consensus        81 ~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L  131 (271)
                      ++|++|++++|.++. ..|..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus       124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A          124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            555555555555553 235555555556666665555554333344433333

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=8.9e-24  Score=189.24  Aligned_cols=166  Identities=22%  Similarity=0.213  Sum_probs=133.1

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      +++++|++++|.+.+..|..   +++|++|++++|.+++..|..+.    ++++|++|++++|.+++..+..|.++++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  101 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFY----SLGSLEHLDLSDNHLSSLSSSWFGPLSSLK  101 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECTTSCCCSCCHHHHTTCTTCC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcc----ccccCCEEECCCCccCccCHHHhccCCCCc
Confidence            57999999999998776655   46899999999998875554444    489999999999999866666789999999


Q ss_pred             EEEccCCccccc-CCcccccCCCccEEEccCCccccccC-ccccCCCCccEEec-------------CCCCcccEEEecc
Q 043038           85 ILKLSNNKFIGN-LPNSFGSLAFLVWLDLGKNRLFGTIP-ATLKNCTALESLDV-------------ERFSRMVVLNLRS  149 (271)
Q Consensus        85 ~L~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~L~l-------------~~~~~L~~L~l~~  149 (271)
                      +|++++|.+++. .|..+..+++|+.|++++|...+.+| ..+..+++|+.|++             ..+++|+.|+++.
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  181 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL  181 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence            999999998752 45678889999999999998444555 57888888888887             4466788899998


Q ss_pred             CccCCCCchhh-hcCccccEEeccCCccce
Q 043038          150 NKFHGPLPTRF-CDLAILQILDIADNNLSG  178 (271)
Q Consensus       150 n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~  178 (271)
                      |.++ ..|..+ ..+++|+.|++++|++++
T Consensus       182 n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~  210 (549)
T 2z81_A          182 SESA-FLLEIFADILSSVRYLELRDTNLAR  210 (549)
T ss_dssp             SBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred             Cccc-ccchhhHhhcccccEEEccCCcccc
Confidence            8886 445443 568899999999999875

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=1.9e-23  Score=187.86  Aligned_cols=232  Identities=18%  Similarity=0.184  Sum_probs=175.1

Q ss_pred             CccCCCcccEEECcCCCCCCCccccC--CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLIS--SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD   80 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l   80 (271)
                      .++.+++|+.|++++|.+.+ +|..+  .+|+.|++++|.+.. +|..      .++.|++|++++|.+....+.  ..+
T Consensus       277 ~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~n~~~~-l~~~------~l~~L~~L~l~~n~~~~~~~~--~~~  346 (570)
T 2z63_A          277 LFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQ-FPTL------KLKSLKRLTFTSNKGGNAFSE--VDL  346 (570)
T ss_dssp             TTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEESCBCSS-CCBC------BCSSCCEEEEESCBSCCBCCC--CBC
T ss_pred             hhcCcCcccEEEecCccchh-hhhhhccCCccEEeeccCcccc-cCcc------cccccCEEeCcCCcccccccc--ccC
Confidence            35667888889998888774 44332  178888888888873 4431      367888888888887644433  567


Q ss_pred             CCCCEEEccCCcccccC--CcccccCCCccEEEccCCccccccCccccCCCCccEEec--------------CCCCcccE
Q 043038           81 QNLKILKLSNNKFIGNL--PNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV--------------ERFSRMVV  144 (271)
Q Consensus        81 ~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l--------------~~~~~L~~  144 (271)
                      ++|++|++++|.+++..  +..+..+++|+.+++++|.+.+ .+..+..+++|+.|++              ..+++|++
T Consensus       347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  425 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  425 (570)
T ss_dssp             TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred             CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence            88888888888877433  5667778888888888888773 4444777888887776              34567888


Q ss_pred             EEeccCccCCCCchhhhcCccccEEeccCCccc-eecCcccccccCCcc----ccccccccccccccccchhhhhhhhce
Q 043038          145 LNLRSNKFHGPLPTRFCDLAILQILDIADNNLS-GAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKAS  219 (271)
Q Consensus       145 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~  219 (271)
                      |++++|.+++..|..+..+++|+.|++++|.++ +.+|..+..++.|+.    .|.+.+..                   
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-------------------  486 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-------------------  486 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-------------------
T ss_pred             EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCC-------------------
Confidence            889999888777888888889999999999886 467888888877776    44454431                   


Q ss_pred             eccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          220 VVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       220 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                             +..+..+++|+.|++++|.+.+..|..|..+++|+.|++++|.++
T Consensus       487 -------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  531 (570)
T 2z63_A          487 -------PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD  531 (570)
T ss_dssp             -------TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             -------hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence                   222346789999999999998877788999999999999999874

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=4.4e-23  Score=168.89  Aligned_cols=207  Identities=20%  Similarity=0.194  Sum_probs=163.2

Q ss_pred             ccCCCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN   82 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   82 (271)
                      +.++++|+.|++++|.+.....- .+++|++|++++|.+++ ++     .+..+++|++|++++|.+++..+..|..+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  110 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS-----ALKELTNLTYLILTGNQLQSLPNGVFDKLTN  110 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG-----GGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch-----hhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence            45678899999999988754322 26899999999999876 32     3445899999999999999666777889999


Q ss_pred             CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhc
Q 043038           83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCD  162 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~  162 (271)
                      |++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..++           +|+.|++++|.+++..+..+..
T Consensus       111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----------~L~~L~l~~n~l~~~~~~~~~~  179 (272)
T 3rfs_A          111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT-----------NLTELDLSYNQLQSLPEGVFDK  179 (272)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCc-----------cCCEEECCCCCcCccCHHHhcC
Confidence            99999999999966667788899999999999998854444455555           4556669999998777777888


Q ss_pred             CccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhh
Q 043038          163 LAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMV  238 (271)
Q Consensus       163 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  238 (271)
                      +++|+.|++++|++++..+..+..++.|+.    .|.+.+                                 .+++++.
T Consensus       180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---------------------------------~~~~l~~  226 (272)
T 3rfs_A          180 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---------------------------------TCPGIRY  226 (272)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC---------------------------------CTTTTHH
T ss_pred             CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc---------------------------------cCcHHHH
Confidence            999999999999998766666777777766    444443                                 3567888


Q ss_pred             hhhcCCcccccccHhhhccCCC
Q 043038          239 TIVSRNDLLKNVPLEVRNLKAT  260 (271)
Q Consensus       239 L~L~~n~l~~~~~~~l~~l~~L  260 (271)
                      ++++.|.+.+.+|.++..++..
T Consensus       227 l~~~~n~~~g~ip~~~~~~~~~  248 (272)
T 3rfs_A          227 LSEWINKHSGVVRNSAGSVAPD  248 (272)
T ss_dssp             HHHHHHHTGGGBBCTTSCBCGG
T ss_pred             HHHHHHhCCCcccCcccccCCC
Confidence            9999999999899888776553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=1e-22  Score=178.39  Aligned_cols=38  Identities=11%  Similarity=0.107  Sum_probs=28.7

Q ss_pred             HHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          231 EILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       231 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      +.+++|+.|++++|++.+ ++  +..+++|+.|++++|+|+
T Consensus       315 ~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~  352 (457)
T 3bz5_A          315 SQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQ  352 (457)
T ss_dssp             TTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCC
T ss_pred             hhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCC
Confidence            455777888888888776 33  778888888888888774

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=8e-23  Score=179.06  Aligned_cols=188  Identities=22%  Similarity=0.228  Sum_probs=157.4

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      ++++.|++++|.+.+..|..   +++|++|++++|.+++..+..+.    ++++|++|++++|.++...+..|..+++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  150 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN----GLASLNTLELFDNWLTVIPSGAFEYLSKLR  150 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc----CcccCCEEECCCCcCCccChhhhcccCCCC
Confidence            57999999999999876665   46899999999999875444444    499999999999999966667789999999


Q ss_pred             EEEccCCcccccCCcccccCCCccEEEccCCccccccC-ccccCCCCccEEec-----------CCCCcccEEEeccCcc
Q 043038           85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIP-ATLKNCTALESLDV-----------ERFSRMVVLNLRSNKF  152 (271)
Q Consensus        85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~L~l-----------~~~~~L~~L~l~~n~l  152 (271)
                      +|++++|.++...+..|..+++|+.|++++|...+.++ ..+..+++|+.|++           ..+++|+.|++++|.+
T Consensus       151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred             EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence            99999999996666688899999999999854433444 45778999999988           4467899999999999


Q ss_pred             CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccc
Q 043038          153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRS  199 (271)
Q Consensus       153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~  199 (271)
                      ++..|..|..+++|+.|++++|++++..+..+..+++|+.    .|.+.+.
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  281 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL  281 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence            9888899999999999999999999888888888888877    5666653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.89  E-value=1.9e-22  Score=177.28  Aligned_cols=161  Identities=24%  Similarity=0.334  Sum_probs=84.3

Q ss_pred             ccCCCcccEEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCC--------
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP--------   74 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--------   74 (271)
                      ++++++|++|++++|.+.+..+-. +++|++|++++|.+++. +.     +.++++|++|++++|.++. ++        
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~-~~-----~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L  158 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI-DP-----LKNLTNLNRLELSSNTISD-ISALSGLTSL  158 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GG-----GTTCTTCSEEEEEEEEECC-CGGGTTCTTC
T ss_pred             hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCC-hH-----HcCCCCCCEEECCCCccCC-ChhhccCCcc
Confidence            556667777777777666554411 45666666666666542 21     2335555566555555542 11        


Q ss_pred             ------------ccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------
Q 043038           75 ------------DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------  136 (271)
Q Consensus        75 ------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------  136 (271)
                                  ..+..+++|++|++++|.++. .+ .+..+++|+.+++++|.+.+..|  ++.+++|+.|++      
T Consensus       159 ~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  234 (466)
T 1o6v_A          159 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-IS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK  234 (466)
T ss_dssp             SEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred             cEeecCCcccCchhhccCCCCCEEECcCCcCCC-Ch-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence                        124455566666666666552 22 35555666666666666553322  444555555554      


Q ss_pred             -----CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038          137 -----ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       137 -----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                           ..+++|+.|++++|.+++..+  +..+++|+.|++++|.++
T Consensus       235 ~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~  278 (466)
T 1o6v_A          235 DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS  278 (466)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC
T ss_pred             cchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC
Confidence                 223445555555555543222  444455555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=1.4e-22  Score=176.84  Aligned_cols=188  Identities=23%  Similarity=0.223  Sum_probs=155.7

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      +.++.|++++|.+....+..   +++|++|++++|.++...+..+    .++++|++|++++|.++...+..|..+++|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  139 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF----NGLANLNTLELFDNRLTTIPNGAFVYLSKLK  139 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGG----TTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhc----cCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence            56899999999998776655   4689999999999886444444    4589999999999999965666789999999


Q ss_pred             EEEccCCcccccCCcccccCCCccEEEccCCccccccC-ccccCCCCccEEec-----------CCCCcccEEEeccCcc
Q 043038           85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIP-ATLKNCTALESLDV-----------ERFSRMVVLNLRSNKF  152 (271)
Q Consensus        85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~L~~L~l-----------~~~~~L~~L~l~~n~l  152 (271)
                      +|++++|.++...+..|..+++|+.|++++|...+.++ ..+..+++|+.|++           ..+++|+.|++++|.+
T Consensus       140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred             eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence            99999999986666788899999999999855433444 46788999999988           4467899999999999


Q ss_pred             CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccc
Q 043038          153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRS  199 (271)
Q Consensus       153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~  199 (271)
                      ++..|..|..+++|+.|++++|++++..+..+..+++|+.    .|.+.+.
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence            9877889999999999999999999888888888888877    5666654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=6e-22  Score=164.72  Aligned_cols=226  Identities=23%  Similarity=0.256  Sum_probs=166.2

Q ss_pred             ccCCCcccEEECcCCCCCCCc--ccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCC-ccc
Q 043038            4 LTKFTQLLFRSLDSNNMSGLL--PLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP-DCW   77 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~--~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~   77 (271)
                      |+++++|++|++++|.+....  +..   +++|++|++++|.++. +|.    .+..+++|++|++++|.++...+ ..+
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~  122 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS----NFLGLEQLEHLDFQHSNLKQMSEFSVF  122 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEE----EEETCTTCCEEECTTSEEESSTTTTTT
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-Chh----hcCCCCCCCEEECCCCcccccccchhh
Confidence            789999999999999987432  222   5799999999999875 443    34459999999999999985443 578


Q ss_pred             cCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCcccc-ccCccccCCCCccEEec-------------CCCCccc
Q 043038           78 MSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG-TIPATLKNCTALESLDV-------------ERFSRMV  143 (271)
Q Consensus        78 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~-~~~~~~~~l~~L~~L~l-------------~~~~~L~  143 (271)
                      ..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ ..|..+..+++|+.|++             ..+++|+
T Consensus       123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  202 (306)
T 2z66_A          123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  202 (306)
T ss_dssp             TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence            899999999999999987788889999999999999999985 47788888888888876             3456777


Q ss_pred             EEEeccCccCCCCchhhhcCccccEEeccCCccceecCccccccc-CCcc----ccccccccccccccccchhhhhhhhc
Q 043038          144 VLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVT-GMVT----TNSFSRSAQQHLHVPLDVDVILMEKA  218 (271)
Q Consensus       144 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~  218 (271)
                      .|++++|.+++..+..+..+++|+.|++++|.+++..|..+..++ .|+.    .|.+.+.                   
T Consensus       203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~-------------------  263 (306)
T 2z66_A          203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT-------------------  263 (306)
T ss_dssp             EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS-------------------
T ss_pred             EEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc-------------------
Confidence            888888877765566677777788888888877766666666553 4544    4444431                   


Q ss_pred             eeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccC
Q 043038          219 SVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLK  258 (271)
Q Consensus       219 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~  258 (271)
                           -....+...+...+.+.+..+.+....|..+++.+
T Consensus       264 -----c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~  298 (306)
T 2z66_A          264 -----CEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP  298 (306)
T ss_dssp             -----GGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred             -----cChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence                 01111223344455555556666556677766544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.89  E-value=3.6e-22  Score=174.93  Aligned_cols=248  Identities=19%  Similarity=0.163  Sum_probs=160.7

Q ss_pred             CCCccCCCcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCC
Q 043038            1 MPNLTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSD   80 (271)
Q Consensus         1 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l   80 (271)
                      +|+++++++|++|++++|.+.+..-..+++|++|++++|.+++ ++      +.++++|++|++++|.+++ ++  +..+
T Consensus        57 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~-~~------~~~l~~L~~L~L~~N~l~~-l~--~~~l  126 (457)
T 3bz5_A           57 MTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTN-LD------VTPLTKLTYLNCDTNKLTK-LD--VSQN  126 (457)
T ss_dssp             CTTGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC-CC------CTTCTTCCEEECCSSCCSC-CC--CTTC
T ss_pred             ChhhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCce-ee------cCCCCcCCEEECCCCcCCe-ec--CCCC
Confidence            3678889999999999999987533336789999999999886 33      4458899999999999884 44  7788


Q ss_pred             CCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec----------CCCCcccEEEeccC
Q 043038           81 QNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----------ERFSRMVVLNLRSN  150 (271)
Q Consensus        81 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----------~~~~~L~~L~l~~n  150 (271)
                      ++|++|++++|++++. +  +..+++|+.+++++|...+.+  .+..+++|+.|++          ..+++|+.|++++|
T Consensus       127 ~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N  201 (457)
T 3bz5_A          127 PLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTN  201 (457)
T ss_dssp             TTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSS
T ss_pred             CcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceeccccCCCCCEEECcCC
Confidence            8999999999988853 2  666777777777777544333  3556666666665          34556777777777


Q ss_pred             ccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchh--hhhhhhceec---
Q 043038          151 KFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVD--VILMEKASVV---  221 (271)
Q Consensus       151 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~--~~~~~~~~~~---  221 (271)
                      .+++.   .+..+++|+.|++++|++++ +|  +..++.|+.    .|.+.+.+...++......  ...+..++..   
T Consensus       202 ~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~  275 (457)
T 3bz5_A          202 NITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT  275 (457)
T ss_dssp             CCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred             cCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCc
Confidence            77643   25666677777777777764 44  445555554    4555543221111100000  0000111111   


Q ss_pred             cccchhhHHHHHhhHhhhhhcCCcccccccH--------hhhccCCCCEEEccCCCCC
Q 043038          222 SREEVVEYNEILNLVMVTIVSRNDLLKNVPL--------EVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       222 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--------~l~~l~~L~~L~l~~n~i~  271 (271)
                      ..+.++  .+.+++|+.|++++|...+.+|.        .+..+++|++|++++|+|+
T Consensus       276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~  331 (457)
T 3bz5_A          276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT  331 (457)
T ss_dssp             TCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred             cCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc
Confidence            111122  24678899999999987665554        2567788999999998875

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=6.8e-23  Score=180.99  Aligned_cols=211  Identities=17%  Similarity=0.131  Sum_probs=156.3

Q ss_pred             CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038            6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN   82 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   82 (271)
                      .+++|+.|++++|.+.+..|..   +++|++|++++|.+++..|      +..+++|++|++++|.++ .++    ..++
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~-~l~----~~~~  100 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQ-ELL----VGPS  100 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE------CTTCTTCCEEECCSSEEE-EEE----ECTT
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc------cccCCCCCEEEecCCcCC-CCC----CCCC
Confidence            4458999999999998877655   4689999999999876444      445889999999999887 333    2378


Q ss_pred             CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhh-
Q 043038           83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFC-  161 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~-  161 (271)
                      |++|++++|.+++..+.   .+++|+.|++++|.+.+..|..+..+++           |+.|++++|.+++..|..+. 
T Consensus       101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------L~~L~Ls~N~l~~~~~~~l~~  166 (487)
T 3oja_A          101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-----------VQYLDLKLNEIDTVNFAELAA  166 (487)
T ss_dssp             CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSS-----------EEEEECTTSCCCEEEGGGGGG
T ss_pred             cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCC-----------CCEEECCCCCCCCcChHHHhh
Confidence            99999999998854433   3578999999999988666666665554           44566888888876666665 


Q ss_pred             cCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHh
Q 043038          162 DLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVM  237 (271)
Q Consensus       162 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  237 (271)
                      .+++|+.|++++|.+++. +. ...++.|+.    .|.+.+.+.                           .+..+++|+
T Consensus       167 ~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~---------------------------~~~~l~~L~  217 (487)
T 3oja_A          167 SSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP---------------------------EFQSAAGVT  217 (487)
T ss_dssp             GTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG---------------------------GGGGGTTCS
T ss_pred             hCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCH---------------------------hHcCCCCcc
Confidence            678888888888888754 22 223555554    455544211                           124678899


Q ss_pred             hhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          238 VTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       238 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      .|++++|.+.+ +|..+..+++|+.|++++|.++
T Consensus       218 ~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             EEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            99999999975 8888999999999999999864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=7.1e-23  Score=171.30  Aligned_cols=211  Identities=18%  Similarity=0.138  Sum_probs=138.4

Q ss_pred             CCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038            6 KFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN   82 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   82 (271)
                      .+++|++|++++|.+.+..|..   +++|++|++++|.+++..+      +..+++|++|++++|.++ .++    ..++
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~l~~L~~L~Ls~n~l~-~l~----~~~~  100 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------LESLSTLRTLDLNNNYVQ-ELL----VGPS  100 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE------ETTCTTCCEEECCSSEEE-EEE----ECTT
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh------hhhcCCCCEEECcCCccc-ccc----CCCC
Confidence            3456777777777777655543   4577777777777765332      334777777777777776 222    2367


Q ss_pred             CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhh-
Q 043038           83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFC-  161 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~-  161 (271)
                      |++|++++|.+++..+.   .+++|+.+++++|.+.+..+..+..++           +|++|++++|.+++..+..+. 
T Consensus       101 L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~-----------~L~~L~Ls~N~l~~~~~~~~~~  166 (317)
T 3o53_A          101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS-----------RVQYLDLKLNEIDTVNFAELAA  166 (317)
T ss_dssp             CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGS-----------SEEEEECTTSCCCEEEGGGGGG
T ss_pred             cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccC-----------CCCEEECCCCCCCcccHHHHhh
Confidence            77777777777643322   246677777777777644444444444           556666888888765555553 


Q ss_pred             cCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHh
Q 043038          162 DLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVM  237 (271)
Q Consensus       162 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  237 (271)
                      .+++|+.|++++|.+++. +.. ..++.|+.    .|.+.+...                           .+..+++|+
T Consensus       167 ~l~~L~~L~L~~N~l~~~-~~~-~~l~~L~~L~Ls~N~l~~l~~---------------------------~~~~l~~L~  217 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYDV-KGQ-VVFAKLKTLDLSSNKLAFMGP---------------------------EFQSAAGVT  217 (317)
T ss_dssp             GTTTCCEEECTTSCCCEE-ECC-CCCTTCCEEECCSSCCCEECG---------------------------GGGGGTTCS
T ss_pred             ccCcCCEEECCCCcCccc-ccc-cccccCCEEECCCCcCCcchh---------------------------hhcccCccc
Confidence            678888888888888743 322 22445544    444444211                           123578889


Q ss_pred             hhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          238 VTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       238 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      .|++++|.+. .+|..+..+++|+.|++++|.++
T Consensus       218 ~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             EEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            9999999987 47888889999999999999874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.88  E-value=2.3e-22  Score=176.06  Aligned_cols=39  Identities=21%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             HhhHhhhhhcCCcccc--cccHhhhcc-------------CCCCEEEccCCCCC
Q 043038          233 LNLVMVTIVSRNDLLK--NVPLEVRNL-------------KATQSLNFSHNTFT  271 (271)
Q Consensus       233 ~~~L~~L~L~~n~l~~--~~~~~l~~l-------------~~L~~L~l~~n~i~  271 (271)
                      +++|+.|++++|.+.+  .+|.++..+             ++|+.|++++|.++
T Consensus       356 l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             CTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred             hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence            5778888888888877  678888777             78888888888764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=2e-22  Score=167.99  Aligned_cols=218  Identities=17%  Similarity=0.151  Sum_probs=135.3

Q ss_pred             cccEEECcCCCCCCCc-c---cc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCC----cccc
Q 043038            9 QLLFRSLDSNNMSGLL-P---LI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP----DCWM   78 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~-~---~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~   78 (271)
                      .++.+.+.++.+.... .   ..  +++|++|++++|.+++..|..+..  ..+++|++|++++|.+++..+    ..+.
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE--ATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS--CCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh--ccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            4566677666654211 1   11  346778888888777655544311  336777788888887774333    3344


Q ss_pred             CCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccc--cCc--cccCCCCccEEecCCCCcccEEEeccCccCC
Q 043038           79 SDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT--IPA--TLKNCTALESLDVERFSRMVVLNLRSNKFHG  154 (271)
Q Consensus        79 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~--~~~--~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~  154 (271)
                      .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.  ++.  .+..++           +|++|++++|.++ 
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~-----------~L~~L~Ls~N~l~-  210 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP-----------AIQNLALRNTGME-  210 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC-----------CCCSCBCCSSCCC-
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC-----------CCCEEECCCCCCC-
Confidence            577788888888877766666777777788888888776532  111  112333           3444446777765 


Q ss_pred             CCch----hhhcCccccEEeccCCccceecCcccccc---cCCcc----ccccccccccccccccchhhhhhhhceeccc
Q 043038          155 PLPT----RFCDLAILQILDIADNNLSGAIPNYINNV---TGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSR  223 (271)
Q Consensus       155 ~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (271)
                      .++.    .+..+++|++|++++|++++..|..+..+   +.|+.    .|.+...     |..                
T Consensus       211 ~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-----p~~----------------  269 (310)
T 4glp_A          211 TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-----PKG----------------  269 (310)
T ss_dssp             CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-----CSC----------------
T ss_pred             chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-----hhh----------------
Confidence            2333    24556677777777777765555555544   34444    3444431     210                


Q ss_pred             cchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          224 EEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       224 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                              ..++|+.|++++|++.+ +|. +..+++|+.|++++|.|+
T Consensus       270 --------~~~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          270 --------LPAKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             --------CCSCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTS
T ss_pred             --------hcCCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCC
Confidence                    12568999999999986 444 688999999999999985

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=1.4e-22  Score=171.99  Aligned_cols=239  Identities=16%  Similarity=0.094  Sum_probs=152.1

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      +++++|++++|.+.+..+..   +++|++|++++|.+++..+..+.    ++++|++|++++|.++...+..|..+++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  127 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS----SLGSLEHLDLSYNYLSNLSSSWFKPLSSLT  127 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT----TCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC----CCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence            47888899988888665533   46888899998888764444443    488889999998888844444578888899


Q ss_pred             EEEccCCcccccCC-cccccCCCccEEEccCCc-cccccCccccCCCCccEEec-------------CCCCcccEEEecc
Q 043038           85 ILKLSNNKFIGNLP-NSFGSLAFLVWLDLGKNR-LFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLRS  149 (271)
Q Consensus        85 ~L~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~-l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L~l~~  149 (271)
                      +|++++|+++...+ ..+..+++|+.+++++|. +.+..+..+..+++|+.|++             ..+++|++|++++
T Consensus       128 ~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence            99999888884333 367788888899988884 55444567778888888877             4457888999999


Q ss_pred             CccCCCCchhhhcCccccEEeccCCccceecCccccc---ccCCcc----ccccccccccccccccchhhhhhhhceec-
Q 043038          150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINN---VTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV-  221 (271)
Q Consensus       150 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~-  221 (271)
                      |.++...+..+..+++|+.|++++|.+++..+..+..   ...+..    .+.+.+.....+|..+ .....+..+++. 
T Consensus       208 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l-~~l~~L~~L~Ls~  286 (353)
T 2z80_A          208 KQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL-NQISGLLELEFSR  286 (353)
T ss_dssp             SCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH-HTCTTCCEEECCS
T ss_pred             CccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH-hcccCCCEEECCC
Confidence            9986433333456788999999999887544333221   111111    2222221111111100 001111111111 


Q ss_pred             -cccchhhH-HHHHhhHhhhhhcCCccccccc
Q 043038          222 -SREEVVEY-NEILNLVMVTIVSRNDLLKNVP  251 (271)
Q Consensus       222 -~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~  251 (271)
                       ....++.. ++.+++|+.|++++|.+.++.|
T Consensus       287 N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          287 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence             11223322 3678899999999999987654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.87  E-value=4.5e-23  Score=172.52  Aligned_cols=204  Identities=23%  Similarity=0.215  Sum_probs=154.3

Q ss_pred             CccCCCcccEEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ   81 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   81 (271)
                      .|+++++|++|++++|.+.+..+-. +++|++|++++|.+++ ++    .    .++|++|++++|.++...+.   .++
T Consensus        53 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~-l~----~----~~~L~~L~l~~n~l~~~~~~---~~~  120 (317)
T 3o53_A           53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-LL----V----GPSIETLHAANNNISRVSCS---RGQ  120 (317)
T ss_dssp             HHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE-EE----E----CTTCCEEECCSSCCSEEEEC---CCS
T ss_pred             HhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc-cc----C----CCCcCEEECCCCccCCcCcc---ccC
Confidence            3678999999999999998765522 6799999999999876 22    2    57899999999998844333   367


Q ss_pred             CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCcccc-CCCCccEEec-----------CCCCcccEEEecc
Q 043038           82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLK-NCTALESLDV-----------ERFSRMVVLNLRS  149 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~-~l~~L~~L~l-----------~~~~~L~~L~l~~  149 (271)
                      +|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++           ..+++|+.|++++
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~  200 (317)
T 3o53_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS  200 (317)
T ss_dssp             SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred             CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCC
Confidence            899999999999866677788889999999999998866566554 6788888887           3367888899999


Q ss_pred             CccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccc
Q 043038          150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREE  225 (271)
Q Consensus       150 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (271)
                      |.+++ +|..+..+++|+.|++++|+++ .+|..+..++.|+.    .|.+..                         ..
T Consensus       201 N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~-------------------------~~  253 (317)
T 3o53_A          201 NKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC-------------------------GT  253 (317)
T ss_dssp             SCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH-------------------------HH
T ss_pred             CcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC-------------------------cC
Confidence            99874 5556888889999999999888 56777776666655    333331                         12


Q ss_pred             hhhHHHHHhhHhhhhhcCCc
Q 043038          226 VVEYNEILNLVMVTIVSRND  245 (271)
Q Consensus       226 ~~~~~~~~~~L~~L~L~~n~  245 (271)
                      .+.++..+++|+.++++++.
T Consensus       254 ~~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          254 LRDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             HHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHhccccceEEECCCch
Confidence            34455667778888877443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=5.4e-22  Score=162.42  Aligned_cols=198  Identities=18%  Similarity=0.166  Sum_probs=149.5

Q ss_pred             CcccEEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEE
Q 043038            8 TQLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKIL   86 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   86 (271)
                      .++..+++.++.+.+..... +++++.|++++|.++. ++.     +..+++|++|++++|.+++ . ..+..+++|++|
T Consensus        19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~-----l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L   90 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQG-----IQYLPNVRYLALGGNKLHD-I-SALKELTNLTYL   90 (272)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCC-CTT-----GGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEE
T ss_pred             HHHHHHHhcCcccccccccccccceeeeeeCCCCccc-ccc-----cccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEE
Confidence            34444566666665544332 6799999999999875 332     3448999999999999984 3 478899999999


Q ss_pred             EccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccc
Q 043038           87 KLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAIL  166 (271)
Q Consensus        87 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  166 (271)
                      ++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++           |++|++++|.+++..+..+..+++|
T Consensus        91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-----------L~~L~L~~n~l~~~~~~~~~~l~~L  159 (272)
T 3rfs_A           91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN-----------LTYLNLAHNQLQSLPKGVFDKLTNL  159 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-----------CCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC-----------CCEEECCCCccCccCHHHhccCccC
Confidence            99999999766777889999999999999998554444555554           5566699999987777778899999


Q ss_pred             cEEeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcc
Q 043038          167 QILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDL  246 (271)
Q Consensus       167 ~~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  246 (271)
                      +.|++++|++++..+..+..                                              +++|+.|++++|.+
T Consensus       160 ~~L~l~~n~l~~~~~~~~~~----------------------------------------------l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          160 TELDLSYNQLQSLPEGVFDK----------------------------------------------LTQLKDLRLYQNQL  193 (272)
T ss_dssp             CEEECCSSCCCCCCTTTTTT----------------------------------------------CTTCCEEECCSSCC
T ss_pred             CEEECCCCCcCccCHHHhcC----------------------------------------------CccCCEEECCCCcC
Confidence            99999999998544443343                                              44566677777877


Q ss_pred             cccccHhhhccCCCCEEEccCCCC
Q 043038          247 LKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       247 ~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      .+..+..+..+++|+.|++++|.+
T Consensus       194 ~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          194 KSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CccCHHHHhCCcCCCEEEccCCCc
Confidence            766666677788888888877765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=4.1e-21  Score=155.32  Aligned_cols=163  Identities=20%  Similarity=0.176  Sum_probs=127.5

Q ss_pred             CcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038            8 TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK   87 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   87 (271)
                      ...+.++++++.+...++...++++.|++++|.+++..+..+.    ++++|++|++++|.+++..+..|..+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFR----GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTT----TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhc----CcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence            3467899999988865544456899999999999875554444    489999999999999877777788999999999


Q ss_pred             ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCcccc
Q 043038           88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQ  167 (271)
Q Consensus        88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  167 (271)
                      +++|.++...+..|..+++|+.|++++|.+++..+..+..++           +|+.|++++|.+++..+..+..+++|+
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~Ls~N~l~~~~~~~~~~l~~L~  158 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT-----------KLKELRLNTNQLQSIPAGAFDKLTNLQ  158 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC-----------cccEEECcCCcCCccCHHHcCcCcCCC
Confidence            999999866667788899999999999998844333445444           455666899999866666788899999


Q ss_pred             EEeccCCccceecCcccc
Q 043038          168 ILDIADNNLSGAIPNYIN  185 (271)
Q Consensus       168 ~L~l~~n~l~~~~~~~~~  185 (271)
                      .|++++|++++..+..+.
T Consensus       159 ~L~L~~N~l~~~~~~~~~  176 (251)
T 3m19_A          159 TLSLSTNQLQSVPHGAFD  176 (251)
T ss_dssp             EEECCSSCCSCCCTTTTT
T ss_pred             EEECCCCcCCccCHHHHh
Confidence            999999998854443333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=1.2e-23  Score=184.45  Aligned_cols=262  Identities=19%  Similarity=0.176  Sum_probs=178.3

Q ss_pred             cccEEECcCCCCCCC----cccc---CCCccEEEccCCccccccchhhhhhcc-CCCcccEEEccCcccCCC----CCcc
Q 043038            9 QLLFRSLDSNNMSGL----LPLI---SSNLVYLGLSDNSFLGSISHFLCDKIN-ETKRLEALKLNDNYLQGE----LPDC   76 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~----~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~----~~~~   76 (271)
                      +|++|++++|.+...    ++..   +++|++|++++|.+++..+..+...+. ..++|++|++++|.++..    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            699999999998842    3433   468999999999987655555555432 356799999999998753    3556


Q ss_pred             ccCCCCCCEEEccCCcccccCCcccc-----cCCCccEEEccCCccccc----cCccccCCCCccEEec-----------
Q 043038           77 WMSDQNLKILKLSNNKFIGNLPNSFG-----SLAFLVWLDLGKNRLFGT----IPATLKNCTALESLDV-----------  136 (271)
Q Consensus        77 ~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~L~l-----------  136 (271)
                      +..+++|++|++++|.++...+..+.     ..++|+.|++++|.+.+.    ++..+..+++|+.|++           
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~  245 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA  245 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence            67788999999999988744333332     256899999999988753    4666777888999988           


Q ss_pred             -------CCCCcccEEEeccCccCCC----CchhhhcCccccEEeccCCccceecCcccccc-----cCCcc----cccc
Q 043038          137 -------ERFSRMVVLNLRSNKFHGP----LPTRFCDLAILQILDIADNNLSGAIPNYINNV-----TGMVT----TNSF  196 (271)
Q Consensus       137 -------~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-----~~L~~----~n~~  196 (271)
                             ..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+.+..+..+...     +.|+.    .|.+
T Consensus       246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  325 (461)
T 1z7x_W          246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF  325 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence                   1367899999999998743    56677778999999999998864433333221     34444    4555


Q ss_pred             ccccccccccccchhhhhhhhceecc---ccchhhHH-HH----HhhHhhhhhcCCcccc----cccHhhhccCCCCEEE
Q 043038          197 SRSAQQHLHVPLDVDVILMEKASVVS---REEVVEYN-EI----LNLVMVTIVSRNDLLK----NVPLEVRNLKATQSLN  264 (271)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~----~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~  264 (271)
                      .+.+...++..+. ....+..+++..   .......+ ..    .++|+.|++++|.+.+    .+|..+..+++|++|+
T Consensus       326 ~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~  404 (461)
T 1z7x_W          326 TAACCSHFSSVLA-QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD  404 (461)
T ss_dssp             BGGGHHHHHHHHH-HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred             chHHHHHHHHHHh-hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence            5432222221110 111222222221   11111222 22    4589999999999976    6888999999999999


Q ss_pred             ccCCCCC
Q 043038          265 FSHNTFT  271 (271)
Q Consensus       265 l~~n~i~  271 (271)
                      +++|+|+
T Consensus       405 l~~N~i~  411 (461)
T 1z7x_W          405 LSNNCLG  411 (461)
T ss_dssp             CCSSSCC
T ss_pred             CCCCCCC
Confidence            9999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=5.6e-23  Score=176.45  Aligned_cols=235  Identities=17%  Similarity=0.148  Sum_probs=159.2

Q ss_pred             ccCCCcccEEECcCCCCCCCccc-------cCCCccEEEccCCccc---cccchh---hhhhccCCCcccEEEccCcccC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPL-------ISSNLVYLGLSDNSFL---GSISHF---LCDKINETKRLEALKLNDNYLQ   70 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~-------~~~~L~~L~l~~n~~~---~~~~~~---~~~~~~~~~~L~~L~l~~n~l~   70 (271)
                      +.++++|+.|++++|.+....+.       .+++|++|++++|.+.   +.+|..   +...+..+++|++|++++|.++
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            45678888999999888765332       2568899999886543   333432   2334566888999999999888


Q ss_pred             C----CCCccccCCCCCCEEEccCCcccccCCcc----cccC---------CCccEEEccCCcccc-ccC---ccccCCC
Q 043038           71 G----ELPDCWMSDQNLKILKLSNNKFIGNLPNS----FGSL---------AFLVWLDLGKNRLFG-TIP---ATLKNCT  129 (271)
Q Consensus        71 ~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~l---------~~L~~l~l~~n~l~~-~~~---~~~~~l~  129 (271)
                      .    .++..+..+++|++|++++|.++...+..    +..+         ++|+.|++++|.+.+ .++   ..+..++
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~  187 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR  187 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence            5    35667788889999999998886333322    3333         788999999988762 333   2333444


Q ss_pred             CccEEecCCCCcccEEEeccCccCC-----CCchhhhcCccccEEeccCCccc----eecCcccccccCCcc----cccc
Q 043038          130 ALESLDVERFSRMVVLNLRSNKFHG-----PLPTRFCDLAILQILDIADNNLS----GAIPNYINNVTGMVT----TNSF  196 (271)
Q Consensus       130 ~L~~L~l~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~----~n~~  196 (271)
                                 +|+.|++++|.++.     ..+..+..+++|+.|++++|.++    +.+|..+..++.|+.    .|.+
T Consensus       188 -----------~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i  256 (386)
T 2ca6_A          188 -----------LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  256 (386)
T ss_dssp             -----------TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             -----------CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC
Confidence                       45566688887762     12336677888888888888885    456666666776665    3444


Q ss_pred             ccccccccccccchhhhhhhhceeccccchhhHHHH--HhhHhhhhhcCCcccc----cccHhh-hccCCCCEEEccCCC
Q 043038          197 SRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEI--LNLVMVTIVSRNDLLK----NVPLEV-RNLKATQSLNFSHNT  269 (271)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~  269 (271)
                      .+.+...                      ++..+..  +++|+.|++++|.+.+    .+|..+ ..+++|+.|++++|.
T Consensus       257 ~~~~~~~----------------------l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          257 SARGAAA----------------------VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CHHHHHH----------------------HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             chhhHHH----------------------HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            3321111                      1122222  6889999999999987    488888 668999999999998


Q ss_pred             CC
Q 043038          270 FT  271 (271)
Q Consensus       270 i~  271 (271)
                      |+
T Consensus       315 l~  316 (386)
T 2ca6_A          315 FS  316 (386)
T ss_dssp             SC
T ss_pred             CC
Confidence            75

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=1.2e-20  Score=152.58  Aligned_cols=156  Identities=21%  Similarity=0.199  Sum_probs=128.0

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      +.++.|++++|.+.+..+..   +++|++|++++|.+++..+..+.    .+++|++|++++|.++...+..|..+++|+
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  110 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD----DLTELGTLGLANNQLASLPLGVFDHLTQLD  110 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT----TCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc----cCCcCCEEECCCCcccccChhHhcccCCCC
Confidence            57899999999999877755   46899999999999875544444    489999999999999966677888999999


Q ss_pred             EEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCc
Q 043038           85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLA  164 (271)
Q Consensus        85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  164 (271)
                      +|++++|+++...+..|..+++|+.|++++|.+++..+..+..+++           |+.|++++|.+++..+..+..++
T Consensus       111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l~  179 (251)
T 3m19_A          111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN-----------LQTLSLSTNQLQSVPHGAFDRLG  179 (251)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------CCEEECCSSCCSCCCTTTTTTCT
T ss_pred             EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC-----------CCEEECCCCcCCccCHHHHhCCC
Confidence            9999999999666666788999999999999998544445655554           55666999999977777888999


Q ss_pred             cccEEeccCCccce
Q 043038          165 ILQILDIADNNLSG  178 (271)
Q Consensus       165 ~L~~L~l~~n~l~~  178 (271)
                      +|+.+++++|.+.+
T Consensus       180 ~L~~L~l~~N~~~c  193 (251)
T 3m19_A          180 KLQTITLFGNQFDC  193 (251)
T ss_dssp             TCCEEECCSCCBCT
T ss_pred             CCCEEEeeCCceeC
Confidence            99999999999874

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=3.5e-22  Score=176.42  Aligned_cols=176  Identities=25%  Similarity=0.244  Sum_probs=140.2

Q ss_pred             CccCCCcccEEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ   81 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   81 (271)
                      .|+++++|++|++++|.+.+..|-. +++|++|++++|.+++ +|    .    .+.|++|++++|.+++..+.   .++
T Consensus        53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~----~----~~~L~~L~L~~N~l~~~~~~---~l~  120 (487)
T 3oja_A           53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE-LL----V----GPSIETLHAANNNISRVSCS---RGQ  120 (487)
T ss_dssp             GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE-EE----E----CTTCCEEECCSSCCCCEEEC---CCS
T ss_pred             HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC-CC----C----CCCcCEEECcCCcCCCCCcc---ccC
Confidence            4789999999999999998766622 6799999999999886 22    2    47899999999999854433   457


Q ss_pred             CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCcccc-CCCCccEEec-----------CCCCcccEEEecc
Q 043038           82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLK-NCTALESLDV-----------ERFSRMVVLNLRS  149 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~-~l~~L~~L~l-----------~~~~~L~~L~l~~  149 (271)
                      +|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++           ..+++|+.|++++
T Consensus       121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~  200 (487)
T 3oja_A          121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS  200 (487)
T ss_dssp             SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCS
T ss_pred             CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCC
Confidence            899999999999977777888899999999999999877777775 6888888887           3367788888888


Q ss_pred             CccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc
Q 043038          150 NKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT  192 (271)
Q Consensus       150 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  192 (271)
                      |.+++ +|..+..+++|+.|++++|.++ .+|..+..++.|..
T Consensus       201 N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~  241 (487)
T 3oja_A          201 NKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH  241 (487)
T ss_dssp             SCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred             CCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCE
Confidence            88874 4455778888888888888887 46666666665554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=8.7e-21  Score=166.04  Aligned_cols=235  Identities=21%  Similarity=0.274  Sum_probs=146.4

Q ss_pred             CcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038            8 TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK   87 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   87 (271)
                      ++|+.|++++|.+.+ +|..+++|++|++++|.+++ ++..       .++|++|++++|.++ .+| .|..+++|++|+
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~-l~~~-------~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~  159 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKA-LSDL-------PPLLEYLGVSNNQLE-KLP-ELQNSSFLKIID  159 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSC-CCSC-------CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCc-cccccCCCcEEECCCCccCc-ccCC-------CCCCCEEECcCCCCC-CCc-ccCCCCCCCEEE
Confidence            456666666666655 44445566666666666654 2211       257889999999888 466 588889999999


Q ss_pred             ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCC---------CCcccEEEeccCccCCCCch
Q 043038           88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER---------FSRMVVLNLRSNKFHGPLPT  158 (271)
Q Consensus        88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~---------~~~L~~L~l~~n~l~~~~~~  158 (271)
                      +++|++++ +|..+   ++|+.+++++|.+.+ +| .+..+++|+.|+++.         .++|+.|++++|.++ .+| 
T Consensus       160 l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-  231 (454)
T 1jl5_A          160 VDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELP-  231 (454)
T ss_dssp             CCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC-
T ss_pred             CCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-ccc-
Confidence            99998883 55433   578899999998884 56 578888888888722         347889999999887 566 


Q ss_pred             hhhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccc-hh------------hhhhhhceec--c
Q 043038          159 RFCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLD-VD------------VILMEKASVV--S  222 (271)
Q Consensus       159 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~--~  222 (271)
                      .+..+++|+.|++++|+++ .+|..+.++..|.. .|.+.+.+..  +.... .+            ...+..+.+.  .
T Consensus       232 ~~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~  308 (454)
T 1jl5_A          232 ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSELPPNLYYLNASSNE  308 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEESCCCTTCCEEECCSSC
T ss_pred             ccCCCCCCCEEECCCCcCC-cccccccccCEEECCCCcccccCcc--cCcCCEEECcCCccCcccCcCCcCCEEECcCCc
Confidence            4788888999999998887 45554444443333 4444442110  00000 00            0000111110  0


Q ss_pred             ccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          223 REEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       223 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      ...++.   ..++|+.|++++|.+.+ +|..   +++|+.|++++|+++
T Consensus       309 l~~i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~  350 (454)
T 1jl5_A          309 IRSLCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA  350 (454)
T ss_dssp             CSEECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred             CCcccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc
Confidence            000110   11467777787777765 5543   577888888888764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=3e-21  Score=158.19  Aligned_cols=156  Identities=22%  Similarity=0.154  Sum_probs=118.9

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      +.+++|++++|.+.+..+..   +++|++|++++|.++...+..+    .++++|++|++++|.++...+..|.++++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  103 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY----QSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  103 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTT----TTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHc----cCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence            45999999999998766644   4689999999999876443333    4589999999999999866778899999999


Q ss_pred             EEEccCCcccccCCcccccCCCccEEEccCCccccc-cCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcC
Q 043038           85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGT-IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDL  163 (271)
Q Consensus        85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~-~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l  163 (271)
                      +|++++|.+....+..+..+++|+.|++++|.+.+. +|..+..+++|+.|+           +++|.+++..+..+..+
T Consensus       104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~-----------Ls~N~l~~~~~~~~~~l  172 (276)
T 2z62_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD-----------LSSNKIQSIYCTDLRVL  172 (276)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE-----------CCSSCCCEECGGGGHHH
T ss_pred             EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE-----------CCCCCCCcCCHHHhhhh
Confidence            999999999866666788999999999999998752 577777777666555           66666654444455544


Q ss_pred             cccc----EEeccCCccce
Q 043038          164 AILQ----ILDIADNNLSG  178 (271)
Q Consensus       164 ~~L~----~L~l~~n~l~~  178 (271)
                      ..++    .+++++|.+++
T Consensus       173 ~~L~~l~l~L~ls~n~l~~  191 (276)
T 2z62_A          173 HQMPLLNLSLDLSLNPMNF  191 (276)
T ss_dssp             HTCTTCCEEEECCSSCCCE
T ss_pred             hhccccceeeecCCCcccc
Confidence            4444    56666666653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=2.3e-23  Score=182.68  Aligned_cols=174  Identities=20%  Similarity=0.194  Sum_probs=102.1

Q ss_pred             ccCCCcccEEECcCCCCCCC----cccc---CCCccEEEccCCccccccchhhhhhccCCC-cccEEEccCcccCC----
Q 043038            4 LTKFTQLLFRSLDSNNMSGL----LPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETK-RLEALKLNDNYLQG----   71 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~----~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~----   71 (271)
                      +..+++|++|++++|.+...    ++..   +++|++|++++|.+++..+..+...+.... +|++|++++|.++.    
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            34566777777777776632    2222   357777777777766544444443322221 57777777777663    


Q ss_pred             CCCccccCCCCCCEEEccCCcccccCCcccc-----cCCCccEEEccCCccccc----cCccccCCCCccEEecC-----
Q 043038           72 ELPDCWMSDQNLKILKLSNNKFIGNLPNSFG-----SLAFLVWLDLGKNRLFGT----IPATLKNCTALESLDVE-----  137 (271)
Q Consensus        72 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~L~l~-----  137 (271)
                      .++..+..+++|++|++++|.++...+..+.     ..++|+.|++++|.+.+.    ++..+..+++|+.|+++     
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            2356666777777777777776533222221     234577777777766642    23444556667777661     


Q ss_pred             -------------CCCcccEEEeccCccCCC----CchhhhcCccccEEeccCCccc
Q 043038          138 -------------RFSRMVVLNLRSNKFHGP----LPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       138 -------------~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                                   ..++|+.|++++|.+++.    ++..+..+++|+.|++++|.+.
T Consensus       184 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence                         134677777777776643    3455556666777777766654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=9.4e-23  Score=173.62  Aligned_cols=229  Identities=18%  Similarity=0.177  Sum_probs=111.4

Q ss_pred             ccEEECcCCCCCCCcc----cc---CC-CccEEEccCCccccccchhhhhhccCC-CcccEEEccCcccCCCCCcc----
Q 043038           10 LLFRSLDSNNMSGLLP----LI---SS-NLVYLGLSDNSFLGSISHFLCDKINET-KRLEALKLNDNYLQGELPDC----   76 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~----~~---~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~----   76 (271)
                      |++|++++|.+.+..+    ..   ++ +|++|++++|.+++..+..+...+... ++|++|++++|.++...+..    
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  103 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT  103 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence            5566666665554433    11   23 556666666655554444444433333 55666666666555333332    


Q ss_pred             ccCC-CCCCEEEccCCcccccCCcccc----c-CCCccEEEccCCccccccCc----cccCCCCccEEecCCCCcccEEE
Q 043038           77 WMSD-QNLKILKLSNNKFIGNLPNSFG----S-LAFLVWLDLGKNRLFGTIPA----TLKNCTALESLDVERFSRMVVLN  146 (271)
Q Consensus        77 ~~~l-~~L~~L~l~~n~~~~~~~~~~~----~-l~~L~~l~l~~n~l~~~~~~----~~~~l~~L~~L~l~~~~~L~~L~  146 (271)
                      +... ++|++|++++|.++...+..+.    . .++|+.|++++|.+.+..+.    .+...+          ++|+.|+
T Consensus       104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~----------~~L~~L~  173 (362)
T 3goz_A          104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP----------ANVNSLN  173 (362)
T ss_dssp             HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC----------TTCCEEE
T ss_pred             HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC----------ccccEee
Confidence            2222 4566666666655533332222    1 13556666666555532211    112221          2556666


Q ss_pred             eccCccCCCCchhhh----cC-ccccEEeccCCcccee----cCccccc-ccCCcc----ccccccccccccccccchhh
Q 043038          147 LRSNKFHGPLPTRFC----DL-AILQILDIADNNLSGA----IPNYINN-VTGMVT----TNSFSRSAQQHLHVPLDVDV  212 (271)
Q Consensus       147 l~~n~l~~~~~~~~~----~l-~~L~~L~l~~n~l~~~----~~~~~~~-~~~L~~----~n~~~~~~~~~~~~~~~~~~  212 (271)
                      +++|.+++..+..++    .. ++|+.|++++|.+++.    ++..+.. .+.|+.    .|.+.+.+...+        
T Consensus       174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--------  245 (362)
T 3goz_A          174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL--------  245 (362)
T ss_dssp             CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHH--------
T ss_pred             ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHH--------
Confidence            777777655444333    33 4677777777776531    2222322 123333    343333211111        


Q ss_pred             hhhhhceeccccchhhHHHHHhhHhhhhhcCCccccc-------ccHhhhccCCCCEEEccCCCC
Q 043038          213 ILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKN-------VPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-------~~~~l~~l~~L~~L~l~~n~i  270 (271)
                                    ......+++|+.|++++|.+.+.       ++..+..+++|+.||+++|.+
T Consensus       246 --------------~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          246 --------------KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             --------------HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             --------------HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence                          11113456677777777763322       233455666777777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=7.3e-21  Score=158.45  Aligned_cols=190  Identities=18%  Similarity=0.277  Sum_probs=125.7

Q ss_pred             cCCCcccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038            5 TKFTQLLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN   82 (271)
Q Consensus         5 ~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   82 (271)
                      .++++|+.|++++|.+... |..  +++|++|++++|.+++ ++.     +..+++|++|++++|.++ .++ .+..+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~-~~~-----~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~  108 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITD-LAP-----LKNLTKITELELSGNPLK-NVS-AIAGLQS  108 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCC-CGG-----GTTCCSCCEEECCSCCCS-CCG-GGTTCTT
T ss_pred             HHcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCC-Chh-----HccCCCCCEEEccCCcCC-Cch-hhcCCCC
Confidence            3466777888887777643 222  5677888888887765 222     334777888888888777 333 5677777


Q ss_pred             CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhc
Q 043038           83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCD  162 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~  162 (271)
                      |++|++++|.+++ .+. +..+++|+.|++++|.+.+ ++. +..           +++|+.|++++|.+++ ++. +..
T Consensus       109 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~-----------l~~L~~L~l~~n~l~~-~~~-l~~  171 (308)
T 1h6u_A          109 IKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAG-----------LTNLQYLSIGNAQVSD-LTP-LAN  171 (308)
T ss_dssp             CCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGG-----------CTTCCEEECCSSCCCC-CGG-GTT
T ss_pred             CCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccC-----------CCCccEEEccCCcCCC-Chh-hcC
Confidence            8888888887773 333 6777778888888877763 332 333           3345566677777764 333 677


Q ss_pred             CccccEEeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhc
Q 043038          163 LAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVS  242 (271)
Q Consensus       163 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~  242 (271)
                      +++|+.|++++|.+++ ++. +.                                              .+++|+.|+++
T Consensus       172 l~~L~~L~l~~n~l~~-~~~-l~----------------------------------------------~l~~L~~L~L~  203 (308)
T 1h6u_A          172 LSKLTTLKADDNKISD-ISP-LA----------------------------------------------SLPNLIEVHLK  203 (308)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GG----------------------------------------------GCTTCCEEECT
T ss_pred             CCCCCEEECCCCccCc-Chh-hc----------------------------------------------CCCCCCEEEcc
Confidence            7778888888777763 221 22                                              35567778888


Q ss_pred             CCcccccccHhhhccCCCCEEEccCCCC
Q 043038          243 RNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       243 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      +|.+.+..  .+..+++|+.|++++|.+
T Consensus       204 ~N~l~~~~--~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          204 NNQISDVS--PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             TSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred             CCccCccc--cccCCCCCCEEEccCCee
Confidence            88876533  377788888888887765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.85  E-value=2.4e-22  Score=167.74  Aligned_cols=201  Identities=17%  Similarity=0.142  Sum_probs=126.6

Q ss_pred             CCCcccEEECcCCCCCCCcccc-----CCCccEEEccCCccccccchhhhhhc-cCCCcccEEEccCcccCCCCCccccC
Q 043038            6 KFTQLLFRSLDSNNMSGLLPLI-----SSNLVYLGLSDNSFLGSISHFLCDKI-NETKRLEALKLNDNYLQGELPDCWMS   79 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~   79 (271)
                      ++++|++|++++|.+.+..|..     +++|++|++++|.+++. |..+.... ..+++|++|++++|++++..+..|..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            4667777777777777655543     34677777777777664 54433310 00266777777777777555566777


Q ss_pred             CCCCCEEEccCCccccc--CCccc--ccCCCccEEEccCCcccc--ccCccccCCCCccEEecCCCCcccEEEeccCccC
Q 043038           80 DQNLKILKLSNNKFIGN--LPNSF--GSLAFLVWLDLGKNRLFG--TIPATLKNCTALESLDVERFSRMVVLNLRSNKFH  153 (271)
Q Consensus        80 l~~L~~L~l~~n~~~~~--~~~~~--~~l~~L~~l~l~~n~l~~--~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~  153 (271)
                      +++|++|++++|++.+.  .+..+  ..+++|+.|++++|.+.+  ..+..+.          ..+++|+.|++++|.++
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~----------~~l~~L~~L~Ls~N~l~  241 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA----------AARVQLQGLDLSHNSLR  241 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH----------HTTCCCSEEECTTSCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH----------hcCCCCCEEECCCCcCC
Confidence            77777777777775432  12222  566777777777777662  1111111          12345667778888888


Q ss_pred             CCCc-hhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhh
Q 043038          154 GPLP-TRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVE  228 (271)
Q Consensus       154 ~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (271)
                      +..| ..+..+++|+.|++++|+++ .+|..+.  ++|+.    .|.+.+.     |.                      
T Consensus       242 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-----p~----------------------  291 (312)
T 1wwl_A          242 DAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-----PS----------------------  291 (312)
T ss_dssp             SSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-----CC----------------------
T ss_pred             cccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-----hh----------------------
Confidence            6554 44556788999999999887 6776665  34443    5555553     11                      


Q ss_pred             HHHHHhhHhhhhhcCCcccc
Q 043038          229 YNEILNLVMVTIVSRNDLLK  248 (271)
Q Consensus       229 ~~~~~~~L~~L~L~~n~l~~  248 (271)
                       +..+++|+.|++++|.+.+
T Consensus       292 -~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          292 -PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             -TTTSCEEEEEECTTCTTTC
T ss_pred             -HhhCCCCCEEeccCCCCCC
Confidence             1357789999999999875

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=1.6e-21  Score=156.53  Aligned_cols=202  Identities=15%  Similarity=0.179  Sum_probs=140.0

Q ss_pred             CccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcc-cCCCCCccccCCCCCCEEEccC-CcccccCCcc
Q 043038           23 LLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNY-LQGELPDCWMSDQNLKILKLSN-NKFIGNLPNS  100 (271)
Q Consensus        23 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~  100 (271)
                      .+|...+++++|++++|.++...+..+    ..+++|++|++++|. ++...+.+|.++++|++|++++ |+++...+..
T Consensus        25 ~ip~~~~~l~~L~l~~n~l~~i~~~~~----~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           25 RIPSLPPSTQTLKLIETHLRTIPSHAF----SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             SCCCCCTTCCEEEEESCCCSEECTTTT----TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccCCCCCcccEEEEeCCcceEECHHHc----cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            344434589999999999876333333    348899999999996 8755556888899999999998 8888666677


Q ss_pred             cccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccC-ccCCCCchhhhcCcccc-EEeccCCccce
Q 043038          101 FGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSN-KFHGPLPTRFCDLAILQ-ILDIADNNLSG  178 (271)
Q Consensus       101 ~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~  178 (271)
                      |..+++|+.+++++|.+.+ +|. +..+++|+        .|+.|++++| .+++..+..|..+++|+ .+++++|+++ 
T Consensus       101 f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~--------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-  169 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD--------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-  169 (239)
T ss_dssp             EECCTTCCEEEEEEECCCS-CCC-CTTCCBCC--------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-
T ss_pred             hCCCCCCCEEeCCCCCCcc-ccc-cccccccc--------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-
Confidence            8888999999999998884 565 55555443        2347778888 88765566688888888 9999988887 


Q ss_pred             ecCcccccccCCcc----ccc-cccccccccccccchhhhhhhhceeccccchhhHHHHH-hhHhhhhhcCCcccccccH
Q 043038          179 AIPNYINNVTGMVT----TNS-FSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEIL-NLVMVTIVSRNDLLKNVPL  252 (271)
Q Consensus       179 ~~~~~~~~~~~L~~----~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~  252 (271)
                      .+|........|+.    .|. +...+.                          ..+..+ ++|+.|++++|.+.+ +|.
T Consensus       170 ~i~~~~~~~~~L~~L~L~~n~~l~~i~~--------------------------~~~~~l~~~L~~L~l~~N~l~~-l~~  222 (239)
T 2xwt_C          170 SVQGYAFNGTKLDAVYLNKNKYLTVIDK--------------------------DAFGGVYSGPSLLDVSQTSVTA-LPS  222 (239)
T ss_dssp             EECTTTTTTCEEEEEECTTCTTCCEECT--------------------------TTTTTCSBCCSEEECTTCCCCC-CCC
T ss_pred             ccCHhhcCCCCCCEEEcCCCCCcccCCH--------------------------HHhhccccCCcEEECCCCcccc-CCh
Confidence            55543322234433    331 333211                          111345 677888888888864 554


Q ss_pred             hhhccCCCCEEEccCC
Q 043038          253 EVRNLKATQSLNFSHN  268 (271)
Q Consensus       253 ~l~~l~~L~~L~l~~n  268 (271)
                      .  .+++|+.|+++++
T Consensus       223 ~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          223 K--GLEHLKELIARNT  236 (239)
T ss_dssp             T--TCTTCSEEECTTC
T ss_pred             h--HhccCceeeccCc
Confidence            4  6778888888775

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=2.5e-20  Score=168.40  Aligned_cols=225  Identities=22%  Similarity=0.247  Sum_probs=126.1

Q ss_pred             CcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEE
Q 043038            8 TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILK   87 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~   87 (271)
                      ++|+.|++++|.+.. +|..+++|++|++++|.++. +|.       .+++|++|++++|.++ .+|.   .+++|+.|+
T Consensus        61 ~~L~~L~L~~N~l~~-lp~~l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~  127 (622)
T 3g06_A           61 AHITTLVIPDNNLTS-LPALPPELRTLEVSGNQLTS-LPV-------LPPGLLELSIFSNPLT-HLPA---LPSGLCKLW  127 (622)
T ss_dssp             TTCSEEEECSCCCSC-CCCCCTTCCEEEECSCCCSC-CCC-------CCTTCCEEEECSCCCC-CCCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCCCC-CCCcCCCCCEEEcCCCcCCc-CCC-------CCCCCCEEECcCCcCC-CCCC---CCCCcCEEE
Confidence            455666666666553 33345566666666666553 332       1455666666666665 3333   345566666


Q ss_pred             ccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec---------CCCCcccEEEeccCccCCCCch
Q 043038           88 LSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV---------ERFSRMVVLNLRSNKFHGPLPT  158 (271)
Q Consensus        88 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l---------~~~~~L~~L~l~~n~l~~~~~~  158 (271)
                      +++|+++ .+|..   +++|+.|++++|.+. .+|..   .++|+.|++         ..+++|+.|++++|.+++ +|.
T Consensus       128 L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~  198 (622)
T 3g06_A          128 IFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPT  198 (622)
T ss_dssp             CCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC
T ss_pred             CCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCCc---cCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCC
Confidence            6666665 33332   356667777776666 33432   233444443         223566777777777663 332


Q ss_pred             hhhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccchhhhhhhhceec--cccchhhHHHHHhh
Q 043038          159 RFCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVV--SREEVVEYNEILNL  235 (271)
Q Consensus       159 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  235 (271)
                      .   .++|+.|++++|.++ .+|..+.++..|.. .|.+.+.+     ...    ..+..+.+.  ....++.   .+++
T Consensus       199 ~---~~~L~~L~L~~N~l~-~l~~~~~~L~~L~Ls~N~L~~lp-----~~l----~~L~~L~Ls~N~L~~lp~---~~~~  262 (622)
T 3g06_A          199 L---PSELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLTSLP-----VLP----SELKELMVSGNRLTSLPM---LPSG  262 (622)
T ss_dssp             C---CTTCCEEECCSSCCS-SCCCCCTTCCEEECCSSCCSCCC-----CCC----TTCCEEECCSSCCSCCCC---CCTT
T ss_pred             c---cchhhEEECcCCccc-ccCCCCCCCCEEEccCCccCcCC-----CCC----CcCcEEECCCCCCCcCCc---cccc
Confidence            2   345666666666665 44444333333333 45454422     100    111111111  1122222   4678


Q ss_pred             HhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          236 VMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       236 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      |+.|++++|.+. .+|..+..+++|+.|++++|.|+
T Consensus       263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred             CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence            999999999997 68999999999999999999875

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.8e-20  Score=147.23  Aligned_cols=182  Identities=21%  Similarity=0.125  Sum_probs=139.0

Q ss_pred             ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038           10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS   89 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   89 (271)
                      -+.++++++.+........+++++|++++|.++...+..+    ..+++|++|++++|+++...+..|..+++|++|+++
T Consensus         9 ~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVF----DELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTT----TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhh----cccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            3577888888876555556789999999999886333333    348999999999999986556667889999999999


Q ss_pred             CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEE
Q 043038           90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL  169 (271)
Q Consensus        90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  169 (271)
                      +|.++...+..+..+++|+.|++++|.+.+..+..+..++           +|+.|++++|.+++..+..+..+++|+.+
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT-----------QLKDLRLYQNQLKSVPDGVFDRLTSLQYI  153 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC-----------cCCEEECCCCccceeCHHHhccCCCccEE
Confidence            9999866566678899999999999998854444455444           45566689999986666668889999999


Q ss_pred             eccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCccccc
Q 043038          170 DIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKN  249 (271)
Q Consensus       170 ~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  249 (271)
                      ++++|.+.+.                                                     +++++.|+++.|.+.+.
T Consensus       154 ~l~~N~~~~~-----------------------------------------------------~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          154 WLHDNPWDCT-----------------------------------------------------CPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             ECCSCCBCCC-----------------------------------------------------TTTTHHHHHHHHHCTTT
T ss_pred             EecCCCeecC-----------------------------------------------------CCCHHHHHHHHHhCCce
Confidence            9999876532                                                     33456777778888888


Q ss_pred             ccHhhhccCC
Q 043038          250 VPLEVRNLKA  259 (271)
Q Consensus       250 ~~~~l~~l~~  259 (271)
                      +|.+++.++.
T Consensus       181 ip~~~~~l~~  190 (208)
T 2o6s_A          181 VRNSAGSVAP  190 (208)
T ss_dssp             BBCTTSSBCT
T ss_pred             eeccCccccC
Confidence            8877776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=2.1e-20  Score=150.04  Aligned_cols=123  Identities=13%  Similarity=0.092  Sum_probs=97.3

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCc-cccccchhhhhhccCCCcccEEEccC-cccCCCCCccccCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNS-FLGSISHFLCDKINETKRLEALKLND-NYLQGELPDCWMSDQN   82 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~   82 (271)
                      +.++.|++++|.+.+..+..   +++|++|++++|. ++...+..    |.++++|++|++++ |.++...+..|.++++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~  106 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS----FYNLSKVTHIEIRNTRNLTYIDPDALKELPL  106 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT----EESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH----cCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence            47999999999998766644   5689999999997 76533323    44589999999998 9998666678999999


Q ss_pred             CCEEEccCCcccccCCcccccCCCcc---EEEccCC-ccccccCccccCCCCcc-EEec
Q 043038           83 LKILKLSNNKFIGNLPNSFGSLAFLV---WLDLGKN-RLFGTIPATLKNCTALE-SLDV  136 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~~~~l~~L~---~l~l~~n-~l~~~~~~~~~~l~~L~-~L~l  136 (271)
                      |++|++++|++++ +|. +..+++|+   .+++++| .+.+..+..+..+++|+ .+++
T Consensus       107 L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l  163 (239)
T 2xwt_C          107 LKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL  163 (239)
T ss_dssp             CCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred             CCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence            9999999999984 665 77888888   9999999 88854445566677666 6654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=1.5e-19  Score=147.62  Aligned_cols=176  Identities=26%  Similarity=0.273  Sum_probs=138.7

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      +.++.|++++|.+.+..+..   +++|++|++++|.++. ++..   .|..+++|++|++++|.++...+..|..+++|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  112 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAG---IFKELKNLETLWVTDNKLQALPIGVFDQLVNLA  112 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTT---TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChh---hhcCCCCCCEEECCCCcCCcCCHhHcccccCCC
Confidence            46999999999998776654   4699999999999986 3322   234589999999999999966667788999999


Q ss_pred             EEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCc
Q 043038           85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLA  164 (271)
Q Consensus        85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  164 (271)
                      +|++++|.++...+..|..+++|+.|++++|.+.+..+..+..+++           |+.|++++|.+++..+..|..++
T Consensus       113 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-----------L~~L~L~~n~l~~~~~~~~~~l~  181 (270)
T 2o6q_A          113 ELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS-----------LKELRLYNNQLKRVPEGAFDKLT  181 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------CCEEECCSSCCSCCCTTTTTTCT
T ss_pred             EEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc-----------cceeEecCCcCcEeChhHhccCC
Confidence            9999999999777777889999999999999998443344555554           55666888988876666788889


Q ss_pred             cccEEeccCCccceecCcccccccCCcc----cccccc
Q 043038          165 ILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSR  198 (271)
Q Consensus       165 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~  198 (271)
                      +|+.|++++|++++..+..+..++.|+.    .|.+..
T Consensus       182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            9999999999988555555676777665    455543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.83  E-value=5.9e-20  Score=151.61  Aligned_cols=177  Identities=19%  Similarity=0.175  Sum_probs=142.4

Q ss_pred             CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCc
Q 043038           28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL  107 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  107 (271)
                      +++++.++++++.++. +|..++      +.++.|++++|.++...+..|..+++|++|++++|.++.. +. ...+++|
T Consensus         9 l~~l~~l~~~~~~l~~-ip~~~~------~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L   79 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTA-LPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL   79 (290)
T ss_dssp             STTCCEEECTTSCCSS-CCSCCC------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred             cCCccEEECCCCCCCc-CCCCCC------CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence            5688999999999975 554432      5789999999999877778899999999999999999843 33 2678999


Q ss_pred             cEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccccc
Q 043038          108 VWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNV  187 (271)
Q Consensus       108 ~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  187 (271)
                      +.|++++|.+. .+|..+..++           +|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+.  
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~-----------~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--  145 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLP-----------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT--  145 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCT-----------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT--
T ss_pred             CEEECCCCcCC-cCchhhccCC-----------CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc--
Confidence            99999999988 6776655554           455666999999977778899999999999999999843333322  


Q ss_pred             cCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccC
Q 043038          188 TGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSH  267 (271)
Q Consensus       188 ~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  267 (271)
                                                                  .+++|+.|++++|++.+..+..|..+++|+.|++++
T Consensus       146 --------------------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  181 (290)
T 1p9a_G          146 --------------------------------------------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE  181 (290)
T ss_dssp             --------------------------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             --------------------------------------------cccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence                                                        345678899999999875555678999999999999


Q ss_pred             CCCC
Q 043038          268 NTFT  271 (271)
Q Consensus       268 n~i~  271 (271)
                      |+|+
T Consensus       182 N~l~  185 (290)
T 1p9a_G          182 NSLY  185 (290)
T ss_dssp             SCCC
T ss_pred             CcCC
Confidence            9875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=5.6e-21  Score=159.28  Aligned_cols=203  Identities=15%  Similarity=0.089  Sum_probs=144.4

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccc--cCCCCCCEEEccCCcccccCC----ccccc
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCW--MSDQNLKILKLSNNKFIGNLP----NSFGS  103 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~~  103 (271)
                      .++.+.+.++.++...-..+...+ .+++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVL-AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHH-HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhc-ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            578889988887532111122211 25679999999999998888887  889999999999999986544    33456


Q ss_pred             CCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCC--C--chhhhcCccccEEeccCCcccee
Q 043038          104 LAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGP--L--PTRFCDLAILQILDIADNNLSGA  179 (271)
Q Consensus       104 l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~  179 (271)
                      +++|+.|++++|.+.+..+..+..+++           |++|++++|.+.+.  .  +..+..+++|++|++++|+++ .
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~-----------L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  211 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPA-----------LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-T  211 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTT-----------CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-C
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCC-----------CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-c
Confidence            899999999999998666666665554           55666999987532  1  122367889999999999997 3


Q ss_pred             cCc----ccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCccccccc
Q 043038          180 IPN----YINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVP  251 (271)
Q Consensus       180 ~~~----~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  251 (271)
                      ++.    .+..++.|+.    .|.+.+..+..+...                       ..+++|+.|++++|.+. .+|
T Consensus       212 l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-----------------------~~~~~L~~L~Ls~N~l~-~lp  267 (310)
T 4glp_A          212 PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC-----------------------MWSSALNSLNLSFAGLE-QVP  267 (310)
T ss_dssp             HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC-----------------------CCCTTCCCEECCSSCCC-SCC
T ss_pred             hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc-----------------------cCcCcCCEEECCCCCCC-chh
Confidence            333    2345566655    666665421111100                       12368999999999997 578


Q ss_pred             HhhhccCCCCEEEccCCCCC
Q 043038          252 LEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       252 ~~l~~l~~L~~L~l~~n~i~  271 (271)
                      ..+.  ++|++|++++|+|+
T Consensus       268 ~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          268 KGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             SCCC--SCCSCEECCSCCCC
T ss_pred             hhhc--CCCCEEECCCCcCC
Confidence            7764  89999999999885

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=2.2e-19  Score=160.53  Aligned_cols=184  Identities=24%  Similarity=0.343  Sum_probs=138.6

Q ss_pred             cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038            9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL   88 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   88 (271)
                      +++.|++++|.+.+..+..+++|++|++++|.++. +| .      .+++|++|++++|.+++ +|. +..  +|++|++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~-ip-~------~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALIS-LP-E------LPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSC-CC-C------CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcc-cc-c------ccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            78999999999987444457899999999999984 66 1      26899999999999995 776 655  9999999


Q ss_pred             cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccE
Q 043038           89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI  168 (271)
Q Consensus        89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  168 (271)
                      ++|.+++ +|.   .+++|+.|++++|.+++ +|.   .           +++|+.|++++|.+++ +|. +.  ++|+.
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~-----------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~  184 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L-----------PTSLEVLSVRNNQLTF-LPE-LP--ESLEA  184 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C-----------CTTCCEEECCSSCCSC-CCC-CC--TTCCE
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c-----------CCCcCEEECCCCCCCC-cch-hh--CCCCE
Confidence            9999985 655   57899999999999884 554   2           2456677799999985 666 55  89999


Q ss_pred             EeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccc
Q 043038          169 LDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLK  248 (271)
Q Consensus       169 L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  248 (271)
                      |++++|.++ .+|. +..  .|.                                       ...+.|+.|++++|.+. 
T Consensus       185 L~Ls~N~L~-~lp~-~~~--~L~---------------------------------------~~~~~L~~L~Ls~N~l~-  220 (571)
T 3cvr_A          185 LDVSTNLLE-SLPA-VPV--RNH---------------------------------------HSEETEIFFRCRENRIT-  220 (571)
T ss_dssp             EECCSSCCS-SCCC-CC-------------------------------------------------CCEEEECCSSCCC-
T ss_pred             EECcCCCCC-chhh-HHH--hhh---------------------------------------cccccceEEecCCCcce-
Confidence            999999998 6665 332  210                                       12334567777777775 


Q ss_pred             cccHhhhccCCCCEEEccCCCCC
Q 043038          249 NVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       249 ~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      .+|..+..+++|+.|++++|.|+
T Consensus       221 ~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          221 HIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             CCCGGGGGSCTTEEEECCSSSCC
T ss_pred             ecCHHHhcCCCCCEEEeeCCcCC
Confidence            37777767777777777777764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.81  E-value=3.3e-19  Score=161.13  Aligned_cols=222  Identities=21%  Similarity=0.225  Sum_probs=162.9

Q ss_pred             cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038            9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL   88 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   88 (271)
                      .++.|++++|.+...++...++|++|++++|.++. +|.       .+++|++|++++|.++ .+|.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~~~L~~L~L~~N~l~~-lp~-------~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPA-------LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCCTTCSEEEECSCCCSC-CCC-------CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcCccChhhCCCCcEEEecCCCCCC-CCC-------cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence            58899999999984433345799999999999985 554       2689999999999998 5665   6789999999


Q ss_pred             cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec---------CCCCcccEEEeccCccCCCCchh
Q 043038           89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV---------ERFSRMVVLNLRSNKFHGPLPTR  159 (271)
Q Consensus        89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l---------~~~~~L~~L~l~~n~l~~~~~~~  159 (271)
                      ++|.++ .+|.   .+++|+.|++++|.++ .+|..   +++|+.|++         ..+++|+.|++++|.+++ +|  
T Consensus       109 s~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~-l~--  177 (622)
T 3g06_A          109 FSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS-LP--  177 (622)
T ss_dssp             CSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CC--
T ss_pred             cCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCC-Cc--
Confidence            999998 4554   5688999999999998 56654   477888887         234578999999999984 55  


Q ss_pred             hhcCccccEEeccCCccceecCcccccccCCcc-ccccccccccccccccchhhhhhhhceec--cccchhhHHHHHhhH
Q 043038          160 FCDLAILQILDIADNNLSGAIPNYINNVTGMVT-TNSFSRSAQQHLHVPLDVDVILMEKASVV--SREEVVEYNEILNLV  236 (271)
Q Consensus       160 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L  236 (271)
                       ..+++|+.|++++|.++ .+|..+.++..|.. .|.+...+     ...    ..+..+.+.  ....++   ..+++|
T Consensus       178 -~~~~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~l~-----~~~----~~L~~L~Ls~N~L~~lp---~~l~~L  243 (622)
T 3g06_A          178 -MLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLP-----ALP----SGLKELIVSGNRLTSLP---VLPSEL  243 (622)
T ss_dssp             -CCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCC-----CCC----TTCCEEECCSSCCSCCC---CCCTTC
T ss_pred             -ccCCCCcEEECCCCCCC-CCCCccchhhEEECcCCcccccC-----CCC----CCCCEEEccCCccCcCC---CCCCcC
Confidence             45678999999999998 56666555555544 55555432     111    111111111  112222   345788


Q ss_pred             hhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          237 MVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       237 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      +.|++++|.+.+ +|.   .+++|+.|++++|+|+
T Consensus       244 ~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          244 KELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC
T ss_pred             cEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC
Confidence            999999998864 665   6788999999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.81  E-value=1.2e-20  Score=158.87  Aligned_cols=172  Identities=18%  Similarity=0.142  Sum_probs=87.3

Q ss_pred             CcccEEECcCCCCCCCcccc--CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCE
Q 043038            8 TQLLFRSLDSNNMSGLLPLI--SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKI   85 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   85 (271)
                      +.++.+++++|.+.+..+..  +++|++|++++|.+++.   .++..+..+++|++|++++|.+++..+..+..+++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHH---HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence            44555555555554443332  23555555555554321   12222233555555555555554444444555555555


Q ss_pred             EEccCC-ccccc-CCcccccCCCccEEEccCC-ccccc-cCccccCCCCccEEecCCCCcccEEEeccC--ccC-CCCch
Q 043038           86 LKLSNN-KFIGN-LPNSFGSLAFLVWLDLGKN-RLFGT-IPATLKNCTALESLDVERFSRMVVLNLRSN--KFH-GPLPT  158 (271)
Q Consensus        86 L~l~~n-~~~~~-~~~~~~~l~~L~~l~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n--~l~-~~~~~  158 (271)
                      |++++| .+++. .+..+..+++|+.|++++| .+++. ++..+..++          ++|++|++++|  .++ +.++.
T Consensus       147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~----------~~L~~L~l~~~~~~~~~~~l~~  216 (336)
T 2ast_B          147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS----------ETITQLNLSGYRKNLQKSDLST  216 (336)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC----------TTCCEEECCSCGGGSCHHHHHH
T ss_pred             EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc----------cCCCEEEeCCCcccCCHHHHHH
Confidence            555555 34321 2333444555555555555 44422 233333333          04556667777  343 24455


Q ss_pred             hhhcCccccEEeccCCc-cceecCcccccccCCcc
Q 043038          159 RFCDLAILQILDIADNN-LSGAIPNYINNVTGMVT  192 (271)
Q Consensus       159 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~  192 (271)
                      .+..+++|+.|++++|. +++..+..+..+++|+.
T Consensus       217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~  251 (336)
T 2ast_B          217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH  251 (336)
T ss_dssp             HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence            66677778888887777 55455556666666555

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=9.6e-19  Score=138.58  Aligned_cols=155  Identities=16%  Similarity=0.160  Sum_probs=129.1

Q ss_pred             ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038           10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS   89 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   89 (271)
                      -+.+++++|.+...++.....+++|++++|.++...+..   .|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus        13 ~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            358999999998654444568899999999998743422   23348999999999999996667789999999999999


Q ss_pred             CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEE
Q 043038           90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL  169 (271)
Q Consensus        90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  169 (271)
                      +|++++..+..|..+++|+.|++++|.+.+..|..+..+++           |+.|++++|.+++..|..|..+++|+.|
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L  158 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS-----------VRLLSLYDNQITTVAPGAFDTLHSLSTL  158 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT-----------CSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc-----------CCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence            99999777777999999999999999999666777766655           4566699999998778899999999999


Q ss_pred             eccCCccce
Q 043038          170 DIADNNLSG  178 (271)
Q Consensus       170 ~l~~n~l~~  178 (271)
                      ++++|.+.+
T Consensus       159 ~L~~N~l~c  167 (220)
T 2v70_A          159 NLLANPFNC  167 (220)
T ss_dssp             ECCSCCEEC
T ss_pred             EecCcCCcC
Confidence            999999874

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.80  E-value=9.3e-21  Score=162.60  Aligned_cols=222  Identities=16%  Similarity=0.173  Sum_probs=158.9

Q ss_pred             CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccC---CCCCccc-------cCCCCCCEEEccCCcccc--
Q 043038           28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQ---GELPDCW-------MSDQNLKILKLSNNKFIG--   95 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~---~~~~~~~-------~~l~~L~~L~l~~n~~~~--   95 (271)
                      +++|++|++++|.++...+..++..+..+++|++|++++|.+.   +.+|..+       ..+++|++|++++|.++.  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4689999999999988777777777888999999999997543   3445444       688999999999999985  


Q ss_pred             --cCCcccccCCCccEEEccCCccccccCccccCC-CCccEEec-CCCCcccEEEeccCccC-CCCc---hhhhcCcccc
Q 043038           96 --NLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNC-TALESLDV-ERFSRMVVLNLRSNKFH-GPLP---TRFCDLAILQ  167 (271)
Q Consensus        96 --~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l-~~L~~L~l-~~~~~L~~L~l~~n~l~-~~~~---~~~~~l~~L~  167 (271)
                        .++..+..+++|+.|++++|.+.+..+..+... ..+....+ ...++|++|++++|.++ +..+   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence              356678889999999999999874433333321 10000000 00146778889999997 3344   4677889999


Q ss_pred             EEeccCCccce-----ecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhh
Q 043038          168 ILDIADNNLSG-----AIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMV  238 (271)
Q Consensus       168 ~L~l~~n~l~~-----~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  238 (271)
                      .|++++|.++.     ..+..+..++.|+.    .|.+...+.                      ..++..+..+++|+.
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~----------------------~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----------------------SALAIALKSWPNLRE  248 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----------------------HHHHHHGGGCTTCCE
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH----------------------HHHHHHHccCCCcCE
Confidence            99999999872     23336667777766    343332100                      112333356789999


Q ss_pred             hhhcCCccccc----ccHhhhc--cCCCCEEEccCCCCC
Q 043038          239 TIVSRNDLLKN----VPLEVRN--LKATQSLNFSHNTFT  271 (271)
Q Consensus       239 L~L~~n~l~~~----~~~~l~~--l~~L~~L~l~~n~i~  271 (271)
                      |+|++|.+.+.    ++..+..  +++|+.|++++|.|+
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            99999999765    5677754  999999999999875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.80  E-value=4e-19  Score=161.28  Aligned_cols=213  Identities=17%  Similarity=0.056  Sum_probs=155.9

Q ss_pred             EEECcCCCCCCCccccC-CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038           12 FRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN   90 (271)
Q Consensus        12 ~L~l~~n~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   90 (271)
                      ..+.++-.++.+ |..+ +++++|++++|.++...+..+    .++++|++|++++|.|+...+.+|.++++|++|++++
T Consensus        35 ~~~c~~~~l~~v-P~~lp~~~~~LdLs~N~i~~l~~~~f----~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~  109 (635)
T 4g8a_A           35 TYQCMELNFYKI-PDNLPFSTKNLDLSFNPLRHLGSYSF----FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG  109 (635)
T ss_dssp             EEECTTSCCSSC-CSSSCTTCCEEECTTSCCCEECTTTT----TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCCcCcc-CCCCCcCCCEEEeeCCCCCCCCHHHH----hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence            457777777754 4444 589999999999987444444    4599999999999999966677899999999999999


Q ss_pred             CcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCC-CCchhhhcCccccEE
Q 043038           91 NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG-PLPTRFCDLAILQIL  169 (271)
Q Consensus        91 n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L  169 (271)
                      |+++...++.|.++++|+.|++++|.+++..+..++.+++           |++|++++|.+++ ..|..+..++.|++|
T Consensus       110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~-----------L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  178 (635)
T 4g8a_A          110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-----------LKELNVAHNLIQSFKLPEYFSNLTNLEHL  178 (635)
T ss_dssp             CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT-----------CCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc-----------cCeeccccCccccCCCchhhccchhhhhh
Confidence            9999666678999999999999999998544445665554           5566699999975 357888999999999


Q ss_pred             eccCCccceecCcccccccCCcc--------ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhh
Q 043038          170 DIADNNLSGAIPNYINNVTGMVT--------TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIV  241 (271)
Q Consensus       170 ~l~~n~l~~~~~~~~~~~~~L~~--------~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  241 (271)
                      ++++|++++..+..+..+..+..        .|.+...     +...                      .....++.+++
T Consensus       179 ~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i-----~~~~----------------------~~~~~~~~l~l  231 (635)
T 4g8a_A          179 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-----QPGA----------------------FKEIRLHKLTL  231 (635)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE-----CTTT----------------------TTTCEEEEEEE
T ss_pred             cccCccccccccccccchhhhhhhhhhhhcccCccccc-----Cccc----------------------ccchhhhhhhh
Confidence            99999999777777766655443        2222221     1000                      01223455677


Q ss_pred             cCCcccc-cccHhhhccCCCCEEEccC
Q 043038          242 SRNDLLK-NVPLEVRNLKATQSLNFSH  267 (271)
Q Consensus       242 ~~n~l~~-~~~~~l~~l~~L~~L~l~~  267 (271)
                      .+|.... ..+..+..+..++...+..
T Consensus       232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~  258 (635)
T 4g8a_A          232 RNNFDSLNVMKTCIQGLAGLEVHRLVL  258 (635)
T ss_dssp             ESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred             hcccccccccchhhcCCcccccccccc
Confidence            7776543 3456678888888776643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=2e-18  Score=143.71  Aligned_cols=163  Identities=19%  Similarity=0.366  Sum_probs=120.7

Q ss_pred             CCCccCCCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038            1 MPNLTKFTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS   79 (271)
Q Consensus         1 ~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   79 (271)
                      +|++.++++|++|++++|.+.+..+- .+++|++|++++|.+++ ++     .+..+++|++|++++|.++ .++. +..
T Consensus        56 l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~-~~~~-l~~  127 (308)
T 1h6u_A           56 IEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN-VS-----AIAGLQSIKTLDLTSTQIT-DVTP-LAG  127 (308)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC-CG-----GGTTCTTCCEEECTTSCCC-CCGG-GTT
T ss_pred             chhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC-ch-----hhcCCCCCCEEECCCCCCC-Cchh-hcC
Confidence            46788999999999999999876652 25799999999999986 33     3555999999999999998 4443 889


Q ss_pred             CCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-----------CCCCcccEEEec
Q 043038           80 DQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-----------ERFSRMVVLNLR  148 (271)
Q Consensus        80 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-----------~~~~~L~~L~l~  148 (271)
                      +++|++|++++|.+++ .+. +..+++|+.|++++|.+.+ ++. +..+++|+.|++           ..+++|++|+++
T Consensus       128 l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  203 (308)
T 1h6u_A          128 LSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLK  203 (308)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred             CCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEcc
Confidence            9999999999999984 433 8889999999999999984 444 666777666664           233455555555


Q ss_pred             cCccCCCCchhhhcCccccEEeccCCccc
Q 043038          149 SNKFHGPLPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       149 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                      +|.+++. + .+..+++|+.|++++|.++
T Consensus       204 ~N~l~~~-~-~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          204 NNQISDV-S-PLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             TSCCCBC-G-GGTTCTTCCEEEEEEEEEE
T ss_pred             CCccCcc-c-cccCCCCCCEEEccCCeee
Confidence            5555532 2 2455555555555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=1.3e-18  Score=137.75  Aligned_cols=152  Identities=18%  Similarity=0.213  Sum_probs=126.1

Q ss_pred             cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038           11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN   90 (271)
Q Consensus        11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   90 (271)
                      +.++++++.+...+....++++.|++++|.++...+..    |..+++|++|++++|.++...|..|.++++|++|++++
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~----~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGA----FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTS----STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhH----hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            67899999888654444569999999999998643333    44589999999999999977789999999999999999


Q ss_pred             CcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEe
Q 043038           91 NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILD  170 (271)
Q Consensus        91 n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  170 (271)
                      |.++...+..|..+++|+.|++++|.+.+..|..+..+++           |+.|++++|.+++..+..|..+++|+.++
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  158 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN-----------LNLLSLYDNKLQTIAKGTFSPLRAIQTMH  158 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-----------CCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC-----------CCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence            9999555566788999999999999998666666666554           45666999999977777899999999999


Q ss_pred             ccCCccc
Q 043038          171 IADNNLS  177 (271)
Q Consensus       171 l~~n~l~  177 (271)
                      +++|.+.
T Consensus       159 L~~N~~~  165 (220)
T 2v9t_B          159 LAQNPFI  165 (220)
T ss_dssp             CCSSCEE
T ss_pred             eCCCCcC
Confidence            9999986

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=3.5e-18  Score=136.20  Aligned_cols=153  Identities=21%  Similarity=0.137  Sum_probs=126.2

Q ss_pred             ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038           10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS   89 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   89 (271)
                      -+.++++++.+...++...+++++|++++|.+++..|..+.    .+++|++|++++|.++...+..|..+++|++|+++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~----~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFD----SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhh----CccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            45789999888765554567999999999999875555444    48999999999999985555678899999999999


Q ss_pred             CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEE
Q 043038           90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL  169 (271)
Q Consensus        90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  169 (271)
                      +|+++...+..|..+++|+.|++++|.+. .+|..+..+++           |+.|++++|.+++..+..+..+++|+.+
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH-----------LTHLALDQNQLKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT-----------CSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC-----------CCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence            99999666667888999999999999998 77877766555           4566699999987666778899999999


Q ss_pred             eccCCccce
Q 043038          170 DIADNNLSG  178 (271)
Q Consensus       170 ~l~~n~l~~  178 (271)
                      ++++|.+.+
T Consensus       165 ~l~~N~~~c  173 (229)
T 3e6j_A          165 YLFGNPWDC  173 (229)
T ss_dssp             ECTTSCBCT
T ss_pred             EeeCCCccC
Confidence            999998874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.1e-18  Score=136.97  Aligned_cols=161  Identities=22%  Similarity=0.194  Sum_probs=128.6

Q ss_pred             CCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038            7 FTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL   83 (271)
Q Consensus         7 ~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L   83 (271)
                      .+++++|++++|.+.+..+..   +++|++|++++|.++...+..    |..+++|++|++++|.++...+..|..+++|
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  102 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV----FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL  102 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhh----cCCCCCcCEEECCCCcCCccCHhHhcCccCC
Confidence            467999999999999766654   579999999999998633333    3358999999999999996666678899999


Q ss_pred             CEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcC
Q 043038           84 KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDL  163 (271)
Q Consensus        84 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l  163 (271)
                      ++|++++|++++..+..+..+++|+.+++++|.+++..+..+..+++           |+.|++++|.+.+       .+
T Consensus       103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~-----------L~~L~l~~N~~~~-------~~  164 (208)
T 2o6s_A          103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS-----------LQYIWLHDNPWDC-------TC  164 (208)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-----------CCEEECCSCCBCC-------CT
T ss_pred             CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC-----------ccEEEecCCCeec-------CC
Confidence            99999999999666666888999999999999998544444555554           5566688887764       34


Q ss_pred             ccccEEeccCCccceecCcccccccC
Q 043038          164 AILQILDIADNNLSGAIPNYINNVTG  189 (271)
Q Consensus       164 ~~L~~L~l~~n~l~~~~~~~~~~~~~  189 (271)
                      +.++.+++..|+++|.+|..++.++.
T Consensus       165 ~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          165 PGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CCHHHHHHHHHhCCceeeccCccccC
Confidence            57888889899998888888877654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.77  E-value=6.5e-20  Score=156.08  Aligned_cols=229  Identities=19%  Similarity=0.142  Sum_probs=165.2

Q ss_pred             EEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCC-cccEEEccCcccCCCCCccccCC-----CC
Q 043038           12 FRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETK-RLEALKLNDNYLQGELPDCWMSD-----QN   82 (271)
Q Consensus        12 ~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l-----~~   82 (271)
                      .+++++|.+.+.+|..   .++|++|++++|.+++..+..+...+..++ +|++|++++|.++...+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4688999999888766   346999999999999877766777777788 89999999999986666666664     89


Q ss_pred             CCEEEccCCcccccCCcccc----cC-CCccEEEccCCccccccCccccCCCCccEEecCC-CCcccEEEeccCccCCCC
Q 043038           83 LKILKLSNNKFIGNLPNSFG----SL-AFLVWLDLGKNRLFGTIPATLKNCTALESLDVER-FSRMVVLNLRSNKFHGPL  156 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~~~----~l-~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~-~~~L~~L~l~~n~l~~~~  156 (271)
                      |++|++++|.+++..+..+.    .. ++|+.|++++|.+.+..+..+...-       .. .++|++|++++|.+++..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l-------~~~~~~L~~L~Ls~N~l~~~~  154 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF-------SNLPASITSLNLRGNDLGIKS  154 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH-------TTSCTTCCEEECTTSCGGGSC
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH-------HhCCCceeEEEccCCcCCHHH
Confidence            99999999999866555443    34 8999999999999855444433210       11 235778889999998644


Q ss_pred             ch----hhhcCc-cccEEeccCCccceecCcccc----cc-cCCcc----ccccccccccccccccchhhhhhhhceecc
Q 043038          157 PT----RFCDLA-ILQILDIADNNLSGAIPNYIN----NV-TGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVS  222 (271)
Q Consensus       157 ~~----~~~~l~-~L~~L~l~~n~l~~~~~~~~~----~~-~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (271)
                      +.    .+...+ +|+.|++++|++++..+..+.    .+ +.|+.    .|.+...+..                    
T Consensus       155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~--------------------  214 (362)
T 3goz_A          155 SDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA--------------------  214 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH--------------------
T ss_pred             HHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH--------------------
Confidence            43    345555 999999999999865554333    22 35554    4444432111                    


Q ss_pred             ccchhhHHHH-HhhHhhhhhcCCccccccc----HhhhccCCCCEEEccCCC
Q 043038          223 REEVVEYNEI-LNLVMVTIVSRNDLLKNVP----LEVRNLKATQSLNFSHNT  269 (271)
Q Consensus       223 ~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~  269 (271)
                        .++..+.. .++|+.|++++|.+.+..+    ..+..+++|+.|++++|.
T Consensus       215 --~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          215 --ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             --HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             --HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence              12222233 3589999999999987554    344678999999999987

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=5.6e-19  Score=150.23  Aligned_cols=153  Identities=21%  Similarity=0.186  Sum_probs=109.8

Q ss_pred             cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038           11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN   90 (271)
Q Consensus        11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   90 (271)
                      +.++++++.+...+......++.|++++|.++...+..+.   ..+++|++|++++|.++...+..|..+++|++|++++
T Consensus        21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~---~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTP---TRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSS---SCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhh---hcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            5788888888764333345788888888888764333332   0478888888888888855666788888888888888


Q ss_pred             CcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhh---hcCcccc
Q 043038           91 NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRF---CDLAILQ  167 (271)
Q Consensus        91 n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~  167 (271)
                      |+++...+..|..+++|+.|++++|.+.+..+..+..+++           |+.|++++|.+++..+..|   ..+++|+
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-----------L~~L~L~~N~l~~l~~~~~~~~~~l~~L~  166 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ-----------LQKLYLSQNQISRFPVELIKDGNKLPKLM  166 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-----------CCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCccc-----------CCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence            8888666667788888888888888887555556655554           4455588888875444444   5678888


Q ss_pred             EEeccCCccc
Q 043038          168 ILDIADNNLS  177 (271)
Q Consensus       168 ~L~l~~n~l~  177 (271)
                      .|++++|+++
T Consensus       167 ~L~L~~N~l~  176 (361)
T 2xot_A          167 LLDLSSNKLK  176 (361)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECCCCCCC
Confidence            8888888887

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=9.6e-19  Score=144.45  Aligned_cols=125  Identities=26%  Similarity=0.265  Sum_probs=57.0

Q ss_pred             CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCc
Q 043038           28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL  107 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  107 (271)
                      +++++.|++++|.++. ++.     +..+++|++|++++|.+++ .+. +..+++|++|++++|.++. ++ .+..+++|
T Consensus        45 l~~L~~L~l~~~~i~~-~~~-----~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L  114 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS-VQG-----IQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKL  114 (291)
T ss_dssp             HHTCCEEECTTSCCCC-CTT-----GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred             cCcccEEEccCCCccc-Chh-----HhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence            3455555555555443 211     2224555555555555542 222 4455555555555555542 22 24455555


Q ss_pred             cEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038          108 VWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       108 ~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                      +.|++++|.+.+ + ..+..+           ++|+.|++++|.+++.  ..+..+++|+.|++++|+++
T Consensus       115 ~~L~L~~n~i~~-~-~~l~~l-----------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          115 KSLSLEHNGISD-I-NGLVHL-----------PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             CEEECTTSCCCC-C-GGGGGC-----------TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             CEEECCCCcCCC-C-hhhcCC-----------CCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence            555555555442 1 122222           2333344555555432  34445555555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=1.1e-19  Score=152.77  Aligned_cols=218  Identities=14%  Similarity=0.167  Sum_probs=154.0

Q ss_pred             cccEEECcCCCCCCCccccC--CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCC-CCccccCCCCCCE
Q 043038            9 QLLFRSLDSNNMSGLLPLIS--SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE-LPDCWMSDQNLKI   85 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~   85 (271)
                      .++.++++++.+....-..+  ++++.+++++|.+.+..+.     +..+++|++|++++|.++.. ++..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCCHHHHHhhhhccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            46788888887763221223  6888899999888775444     22478899999999888744 6677788889999


Q ss_pred             EEccCCcccccCCcccccCCCccEEEccCC-ccccc-cCccccCCCCccEEecCCCCcccEEEeccC-ccCCC-Cchhhh
Q 043038           86 LKLSNNKFIGNLPNSFGSLAFLVWLDLGKN-RLFGT-IPATLKNCTALESLDVERFSRMVVLNLRSN-KFHGP-LPTRFC  161 (271)
Q Consensus        86 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n-~l~~~-~~~~~~  161 (271)
                      |++++|.+++..+..+..+++|+.|++++| .+++. ++..+..++           +|++|++++| .+++. ++..+.
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~-----------~L~~L~l~~~~~l~~~~~~~~~~  191 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS-----------RLDELNLSWCFDFTEKHVQVAVA  191 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT-----------TCCEEECCCCTTCCHHHHHHHHH
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC-----------CCCEEcCCCCCCcChHHHHHHHH
Confidence            999998887666777778888999999888 56542 444455444           4556668888 88743 567788


Q ss_pred             cCc-cccEEeccCCc--cc-eecCcccccccCCcc----ccc-cccccccccccccchhhhhhhhceeccccchhhHHHH
Q 043038          162 DLA-ILQILDIADNN--LS-GAIPNYINNVTGMVT----TNS-FSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEI  232 (271)
Q Consensus       162 ~l~-~L~~L~l~~n~--l~-~~~~~~~~~~~~L~~----~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (271)
                      .++ +|+.|++++|.  ++ +.++..+..+++|+.    .+. +.+.                          .+..+..
T Consensus       192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--------------------------~~~~l~~  245 (336)
T 2ast_B          192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND--------------------------CFQEFFQ  245 (336)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG--------------------------GGGGGGG
T ss_pred             hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH--------------------------HHHHHhC
Confidence            899 99999999994  44 345566666776666    233 2221                          1112245


Q ss_pred             HhhHhhhhhcCCc-ccccccHhhhccCCCCEEEccCC
Q 043038          233 LNLVMVTIVSRND-LLKNVPLEVRNLKATQSLNFSHN  268 (271)
Q Consensus       233 ~~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~l~~n  268 (271)
                      +++|+.|++++|. +.+.....+..+++|+.|++++|
T Consensus       246 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            6889999999995 44444456888999999999988

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=5e-18  Score=144.33  Aligned_cols=155  Identities=27%  Similarity=0.240  Sum_probs=76.6

Q ss_pred             ccEEECcCCCCCCCcccc----CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCE
Q 043038           10 LLFRSLDSNNMSGLLPLI----SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKI   85 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~----~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   85 (271)
                      ++.|++++|.+.+..+..    +++|++|++++|.++...+..+    ..+++|++|++++|.++...+..|..+++|+.
T Consensus        41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF----VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV  116 (361)
T ss_dssp             CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT----TTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc----cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence            555566666555443332    3455566666665554222222    23555666666666555334444555555666


Q ss_pred             EEccCCcccccCCcccccCCCccEEEccCCccccccCcccc-CCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCc
Q 043038           86 LKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLK-NCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLA  164 (271)
Q Consensus        86 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~-~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  164 (271)
                      |++++|+++...+..|..+++|+.|++++|.+. .+|..+. .+        ..+++|+.|++++|.+++..+..+..++
T Consensus       117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~--------~~l~~L~~L~L~~N~l~~l~~~~~~~l~  187 (361)
T 2xot_A          117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDG--------NKLPKLMLLDLSSNKLKKLPLTDLQKLP  187 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC------------CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred             EECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCc--------ccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence            666666555444555555555666666665555 2333221 00        1123344444555555544344455554


Q ss_pred             c--ccEEeccCCccc
Q 043038          165 I--LQILDIADNNLS  177 (271)
Q Consensus       165 ~--L~~L~l~~n~l~  177 (271)
                      .  ++.+++++|.+.
T Consensus       188 ~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          188 AWVKNGLYLHNNPLE  202 (361)
T ss_dssp             HHHHTTEECCSSCEE
T ss_pred             HhhcceEEecCCCcc
Confidence            3  245555555543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=1.1e-17  Score=132.50  Aligned_cols=139  Identities=20%  Similarity=0.220  Sum_probs=104.1

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCC-ccccCCCCCCEEEccCCcccccCCcccccCCCcc
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP-DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLV  108 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  108 (271)
                      .-+.+++++|.++. +|..++      ..+++|++++|.++...+ ..|..+++|++|++++|++++..+..|..+++|+
T Consensus        12 ~~~~l~~s~n~l~~-iP~~~~------~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   84 (220)
T 2v70_A           12 EGTTVDCSNQKLNK-IPEHIP------QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN   84 (220)
T ss_dssp             ETTEEECCSSCCSS-CCSCCC------TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCEeEeCCCCccc-CccCCC------CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence            44688888888875 665443      356889999998885433 4578888999999999988866666788888899


Q ss_pred             EEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCccccc
Q 043038          109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINN  186 (271)
Q Consensus       109 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  186 (271)
                      .|++++|.+.+..+..+..+++           |++|++++|.+++..|..|..+++|+.|++++|++++..|..+..
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~~-----------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  151 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLES-----------LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT  151 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCSS-----------CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTT
T ss_pred             EEECCCCccCccCHhHhcCCcC-----------CCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcC
Confidence            9999999888555555655554           445558888888777788888888888999888888555555443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.75  E-value=1.9e-19  Score=162.49  Aligned_cols=185  Identities=15%  Similarity=0.104  Sum_probs=117.5

Q ss_pred             CCCcccEEECcCCCCCCCc-------cccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCcccc
Q 043038            6 KFTQLLFRSLDSNNMSGLL-------PLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWM   78 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~-------~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~   78 (271)
                      .+++|++|++++|.+.+..       +..+++|+.|++++|.+++.....+...+.++++|++|++++|.+. .++..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHh
Confidence            5678888888888775542       2235788888888888764333445555555788888888888776 3455555


Q ss_pred             CCCCCCEEEccC---------------------------CcccccCCcccccCCCccEEEccCCccccccC-ccccCCCC
Q 043038           79 SDQNLKILKLSN---------------------------NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIP-ATLKNCTA  130 (271)
Q Consensus        79 ~l~~L~~L~l~~---------------------------n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~-~~~~~l~~  130 (271)
                      .+++|++|+++.                           +... .+|..+..+++|+.|++++|.+.+... ..+..+++
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence            555666665542                           2111 344455667789999998888654333 33567888


Q ss_pred             ccEEec-------------CCCCcccEEEecc-----------CccCCC-CchhhhcCccccEEeccCCccceecCcccc
Q 043038          131 LESLDV-------------ERFSRMVVLNLRS-----------NKFHGP-LPTRFCDLAILQILDIADNNLSGAIPNYIN  185 (271)
Q Consensus       131 L~~L~l-------------~~~~~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  185 (271)
                      |+.|++             ..+++|+.|++++           +.+++. ++.....+++|+.|+++.+.+++..+..+.
T Consensus       320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~  399 (592)
T 3ogk_B          320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG  399 (592)
T ss_dssp             CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred             CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence            888877             4467888888883           455432 222234577788888877777654444443


Q ss_pred             c-ccCCcc
Q 043038          186 N-VTGMVT  192 (271)
Q Consensus       186 ~-~~~L~~  192 (271)
                      . +++|+.
T Consensus       400 ~~~~~L~~  407 (592)
T 3ogk_B          400 TYLKNLCD  407 (592)
T ss_dssp             HHCCSCCE
T ss_pred             hhCCCCcE
Confidence            3 444444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=9.3e-18  Score=132.90  Aligned_cols=137  Identities=22%  Similarity=0.284  Sum_probs=107.3

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW  109 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  109 (271)
                      .-+.++.+++.++. +|..++      +.+++|++++|.++...+..|..+++|++|++++|+++...|..|..+++|+.
T Consensus        12 ~~~~v~c~~~~l~~-iP~~l~------~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~   84 (220)
T 2v9t_B           12 SNNIVDCRGKGLTE-IPTNLP------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS   84 (220)
T ss_dssp             ETTEEECTTSCCSS-CCSSCC------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred             CCCEEEcCCCCcCc-CCCccC------cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence            34678888888875 565433      57899999999998666668888999999999999998777888999999999


Q ss_pred             EEccCCccccccCcc-ccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecCcccc
Q 043038          110 LDLGKNRLFGTIPAT-LKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYIN  185 (271)
Q Consensus       110 l~l~~n~l~~~~~~~-~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  185 (271)
                      |++++|.++ .+|.. +..++           +|+.|++++|.+++..+..|..+++|+.|++++|++++..+..+.
T Consensus        85 L~Ls~N~l~-~l~~~~f~~l~-----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  149 (220)
T 2v9t_B           85 LVLYGNKIT-ELPKSLFEGLF-----------SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS  149 (220)
T ss_dssp             EECCSSCCC-CCCTTTTTTCT-----------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             EECCCCcCC-ccCHhHccCCC-----------CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHh
Confidence            999999988 44543 44444           455666899999877788888999999999999998854443333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=6.1e-18  Score=131.64  Aligned_cols=152  Identities=17%  Similarity=0.206  Sum_probs=105.3

Q ss_pred             cCCCcccEEECcCCCCCCCcc-ccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038            5 TKFTQLLFRSLDSNNMSGLLP-LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL   83 (271)
Q Consensus         5 ~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L   83 (271)
                      +++++|+.|++++|.+..... ..+++|++|++++|.++. ++     .+..+++|++|++++|.+++..+..+..+++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~-~~-----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  114 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN-YN-----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL  114 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC-CG-----GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc-ch-----hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence            356678888888887774321 125688888888886653 21     23447888888888888876567777888888


Q ss_pred             CEEEccCCcccccCCcccccCCCccEEEccCCc-cccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhc
Q 043038           84 KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNR-LFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCD  162 (271)
Q Consensus        84 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~-l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~  162 (271)
                      ++|++++|++++..+..+..+++|+.|++++|. +. .+| .+..++           +|+.|++++|.+++ ++ .+..
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~-----------~L~~L~l~~n~i~~-~~-~l~~  179 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLP-----------ELKSLNIQFDGVHD-YR-GIED  179 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCS-----------SCCEEECTTBCCCC-CT-TGGG
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCC-----------CCCEEECCCCCCcC-hH-Hhcc
Confidence            888888888876566777788888888888887 54 444 344443           45566688888874 33 6777


Q ss_pred             CccccEEeccCCccc
Q 043038          163 LAILQILDIADNNLS  177 (271)
Q Consensus       163 l~~L~~L~l~~n~l~  177 (271)
                      +++|+.|++++|++.
T Consensus       180 l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          180 FPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSSCCEEEECBC---
T ss_pred             CCCCCEEEeeCcccC
Confidence            888888888888875

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.75  E-value=6.8e-18  Score=142.93  Aligned_cols=182  Identities=16%  Similarity=0.167  Sum_probs=118.3

Q ss_pred             cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCC-CccccCCCCCCE-EEc
Q 043038           11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGEL-PDCWMSDQNLKI-LKL   88 (271)
Q Consensus        11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~-L~l   88 (271)
                      +.++.+++.++..+....+++++|++++|.++. +|.   ++|.++++|++|++++|.+...+ +.+|.+++++++ +.+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~-i~~---~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-IQK---GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSE-ECT---TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCCccCcCcCCCCCEEEccCCcCCC-cCH---HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            567888888875433334689999999999875 432   23445889999999999875444 456788887665 556


Q ss_pred             cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec--------------CC-CCcccEEEeccCccC
Q 043038           89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV--------------ER-FSRMVVLNLRSNKFH  153 (271)
Q Consensus        89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l--------------~~-~~~L~~L~l~~n~l~  153 (271)
                      .+|+++...|..|..+++|+.+++++|.+....+..+....++..+++              .. ...++.|++++|.++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~  167 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ  167 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence            678888666778888899999999999887443333444444555544              11 124667777777776


Q ss_pred             CCCchhhhcCccccEEeccC-CccceecC-cccccccCCcc----cccccc
Q 043038          154 GPLPTRFCDLAILQILDIAD-NNLSGAIP-NYINNVTGMVT----TNSFSR  198 (271)
Q Consensus       154 ~~~~~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~~~~L~~----~n~~~~  198 (271)
                      . ++.......+++.+++.+ |.++ .+| ..+..+++|+.    .|.+..
T Consensus       168 ~-i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~  216 (350)
T 4ay9_X          168 E-IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHS  216 (350)
T ss_dssp             E-ECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCC
T ss_pred             C-CChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCc
Confidence            3 444333445677777764 5555 444 34566666655    455554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1e-17  Score=130.40  Aligned_cols=151  Identities=15%  Similarity=0.180  Sum_probs=114.9

Q ss_pred             CCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEe
Q 043038           56 TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLD  135 (271)
Q Consensus        56 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~  135 (271)
                      +++|++|++++|.++ .+| .+..+++|++|++++|.++ .. ..+..+++|+.|++++|.+.+..+..+..+++     
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-----  113 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTS-----  113 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT-----
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCC-----
Confidence            678889999999888 666 5788889999999999775 33 46778889999999999888656666655554     


Q ss_pred             cCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCc-cceecCcccccccCCccccccccccccccccccchhhhh
Q 043038          136 VERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNN-LSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVIL  214 (271)
Q Consensus       136 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~  214 (271)
                            |++|++++|.+++..+..+..+++|+.|++++|. ++ .++ .+.                             
T Consensus       114 ------L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~-----------------------------  156 (197)
T 4ezg_A          114 ------LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLK-----------------------------  156 (197)
T ss_dssp             ------CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGG-----------------------------
T ss_pred             ------CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhc-----------------------------
Confidence                  4566688898887678888889999999999987 54 333 222                             


Q ss_pred             hhhceeccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCCC
Q 043038          215 MEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                                       .+++|+.|++++|.+.+ ++ .+..+++|+.|++++|+|.
T Consensus       157 -----------------~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          157 -----------------TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             -----------------GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             -----------------CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence                             35567889999999865 44 7889999999999999874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.74  E-value=3.5e-17  Score=130.40  Aligned_cols=133  Identities=25%  Similarity=0.229  Sum_probs=104.3

Q ss_pred             CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCcc
Q 043038           29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLV  108 (271)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  108 (271)
                      +..+.++.+++.++. +|..+      .++|++|++++|.+++..|..|..+++|++|++++|+++...+..|..+++|+
T Consensus        19 Cs~~~v~c~~~~l~~-ip~~~------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~   91 (229)
T 3e6j_A           19 CSGTTVDCRSKRHAS-VPAGI------PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT   91 (229)
T ss_dssp             EETTEEECTTSCCSS-CCSCC------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EeCCEeEccCCCcCc-cCCCC------CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence            466788888888875 66543      36889999999999877788888999999999999999855556678899999


Q ss_pred             EEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceec
Q 043038          109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI  180 (271)
Q Consensus       109 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  180 (271)
                      .|++++|.+++..+..+..+++           |+.|++++|.++ .+|..+..+++|+.|++++|++++..
T Consensus        92 ~L~Ls~N~l~~l~~~~~~~l~~-----------L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A           92 VLDLGTNQLTVLPSAVFDRLVH-----------LKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTT-----------CCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred             EEECCCCcCCccChhHhCcchh-----------hCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence            9999999988443444455544           456668899998 67888888999999999999887433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=2.6e-17  Score=135.79  Aligned_cols=160  Identities=21%  Similarity=0.287  Sum_probs=111.6

Q ss_pred             ccCCCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN   82 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   82 (271)
                      +.++++|+.|++++|.+.....- .+++|++|++++|.+++. +.     +.++++|++|++++|.++ .++ .+..+++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~-~~-----l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~  113 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-KP-----LANLKNLGWLFLDENKVK-DLS-SLKDLKK  113 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-GG-----GTTCTTCCEEECCSSCCC-CGG-GGTTCTT
T ss_pred             hhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC-cc-----cccCCCCCEEECCCCcCC-CCh-hhccCCC
Confidence            44677888899988888754221 257889999999988763 22     445888999999999887 343 3788888


Q ss_pred             CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-----------CCCCcccEEEeccCc
Q 043038           83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-----------ERFSRMVVLNLRSNK  151 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-----------~~~~~L~~L~l~~n~  151 (271)
                      |++|++++|+++. + ..+..+++|+.|++++|.+.+ + ..+..+++|+.|++           ..+++|+.|++++|.
T Consensus       114 L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          114 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             CCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCc
Confidence            9999999988874 3 457788889999999888874 3 45666666666664           234556666666666


Q ss_pred             cCCCCchhhhcCccccEEeccCCccc
Q 043038          152 FHGPLPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       152 l~~~~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                      +++ ++ .+..+++|+.|++++|.+.
T Consensus       190 i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          190 ISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             CCC-Ch-hhccCCCCCEEECcCCccc
Confidence            653 33 3556666666666666655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=7.5e-18  Score=151.99  Aligned_cols=147  Identities=23%  Similarity=0.316  Sum_probs=72.3

Q ss_pred             CCCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            6 KFTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      ++++|+.|++++|.+....+- .+++|+.|++++|.+.+..+      +..+++|+.|++++|.++ .++ .+..+++|+
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~------l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~  112 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP------LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLK  112 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG------GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCC
T ss_pred             cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh------hccCCCCCEEECcCCCCC-CCh-hhccCCCCC
Confidence            445555555555555432211 14455555555555554222      223555555555555555 222 345555555


Q ss_pred             EEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCc
Q 043038           85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLA  164 (271)
Q Consensus        85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  164 (271)
                      .|++++|.+.. + +.+..+++|+.|++++|.+.+ + ..+..+           ++|+.|++++|.+++..|  +..++
T Consensus       113 ~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l-----------~~L~~L~Ls~N~l~~~~~--l~~l~  175 (605)
T 1m9s_A          113 SLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I-TVLSRL-----------TKLDTLSLEDNQISDIVP--LAGLT  175 (605)
T ss_dssp             EEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCC-C-GGGGSC-----------TTCSEEECCSSCCCCCGG--GTTCT
T ss_pred             EEEecCCCCCC-C-ccccCCCccCEEECCCCccCC-c-hhhccc-----------CCCCEEECcCCcCCCchh--hccCC
Confidence            55555555552 2 235555555555555555542 1 222222           233344455555553333  55555


Q ss_pred             cccEEeccCCccc
Q 043038          165 ILQILDIADNNLS  177 (271)
Q Consensus       165 ~L~~L~l~~n~l~  177 (271)
                      +|+.|++++|.++
T Consensus       176 ~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          176 KLQNLYLSKNHIS  188 (605)
T ss_dssp             TCCEEECCSSCCC
T ss_pred             CCCEEECcCCCCC
Confidence            6666666665554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=8.7e-18  Score=151.57  Aligned_cols=144  Identities=23%  Similarity=0.230  Sum_probs=87.6

Q ss_pred             ccEEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038           10 LLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL   88 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   88 (271)
                      +..+.+..+.+.+..+.. +++|+.|++++|.+.. ++.     +..+++|+.|++++|.+++. +. +..+++|+.|++
T Consensus        23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~-l~~-----l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~L   94 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQG-----IQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFL   94 (605)
T ss_dssp             HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCC-CTT-----GGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEEC
T ss_pred             HHHHhccCCCcccccchhcCCCCCEEECcCCCCCC-ChH-----HccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEEC
Confidence            334455555555443322 5677777777777654 221     33367777777777777633 33 667777777777


Q ss_pred             cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccE
Q 043038           89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQI  168 (271)
Q Consensus        89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  168 (271)
                      ++|.+.. ++ .+..+++|+.|++++|.+.+ + +.+..+           ++|+.|++++|.+++.  ..+..+++|+.
T Consensus        95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l-----------~~L~~L~Ls~N~l~~l--~~l~~l~~L~~  157 (605)
T 1m9s_A           95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHL-----------PQLESLYLGNNKITDI--TVLSRLTKLDT  157 (605)
T ss_dssp             CSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGC-----------TTCSEEECCSSCCCCC--GGGGSCTTCSE
T ss_pred             cCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCC-----------CccCEEECCCCccCCc--hhhcccCCCCE
Confidence            7777763 33 46667777777777777663 2 223333           3444555777777643  45667777777


Q ss_pred             EeccCCccce
Q 043038          169 LDIADNNLSG  178 (271)
Q Consensus       169 L~l~~n~l~~  178 (271)
                      |++++|.+.+
T Consensus       158 L~Ls~N~l~~  167 (605)
T 1m9s_A          158 LSLEDNQISD  167 (605)
T ss_dssp             EECCSSCCCC
T ss_pred             EECcCCcCCC
Confidence            7777777764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.70  E-value=1.5e-16  Score=142.21  Aligned_cols=147  Identities=24%  Similarity=0.340  Sum_probs=112.0

Q ss_pred             CCcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEE
Q 043038            7 FTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKIL   86 (271)
Q Consensus         7 ~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   86 (271)
                      +++|+.|++++|.+.. +|..+++|++|++++|.+++ +|. ++      .+|++|++++|.+++ +|.   .+++|+.|
T Consensus        79 ~~~L~~L~Ls~N~l~~-ip~~l~~L~~L~Ls~N~l~~-ip~-l~------~~L~~L~Ls~N~l~~-lp~---~l~~L~~L  145 (571)
T 3cvr_A           79 PPQITVLEITQNALIS-LPELPASLEYLDACDNRLST-LPE-LP------ASLKHLDVDNNQLTM-LPE---LPALLEYI  145 (571)
T ss_dssp             CTTCSEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC-CC------TTCCEEECCSSCCSC-CCC---CCTTCCEE
T ss_pred             cCCCCEEECcCCCCcc-cccccCCCCEEEccCCCCCC-cch-hh------cCCCEEECCCCcCCC-CCC---cCccccEE
Confidence            3679999999999984 55667899999999999987 665 33      289999999999994 666   67899999


Q ss_pred             EccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccc
Q 043038           87 KLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAIL  166 (271)
Q Consensus        87 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  166 (271)
                      ++++|.+++ +|.   .+++|+.|++++|.+++ +|. +.  +           +|+.|++++|.++ .+|. +..  +|
T Consensus       146 ~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~-----------~L~~L~Ls~N~L~-~lp~-~~~--~L  202 (571)
T 3cvr_A          146 NADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--E-----------SLEALDVSTNLLE-SLPA-VPV--RN  202 (571)
T ss_dssp             ECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--T-----------TCCEEECCSSCCS-SCCC-CC-----
T ss_pred             eCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--C-----------CCCEEECcCCCCC-chhh-HHH--hh
Confidence            999999984 555   57899999999999984 666 43  3           4556668888887 4555 443  56


Q ss_pred             -------cEEeccCCccceecCcccccccCC
Q 043038          167 -------QILDIADNNLSGAIPNYINNVTGM  190 (271)
Q Consensus       167 -------~~L~l~~n~l~~~~~~~~~~~~~L  190 (271)
                             +.|++++|.++ .+|..+..++.|
T Consensus       203 ~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L  232 (571)
T 3cvr_A          203 HHSEETEIFFRCRENRIT-HIPENILSLDPT  232 (571)
T ss_dssp             -----CCEEEECCSSCCC-CCCGGGGGSCTT
T ss_pred             hcccccceEEecCCCcce-ecCHHHhcCCCC
Confidence                   88888888887 566655444433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=5.9e-17  Score=131.76  Aligned_cols=146  Identities=20%  Similarity=0.288  Sum_probs=91.0

Q ss_pred             CCcccEEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCE
Q 043038            7 FTQLLFRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKI   85 (271)
Q Consensus         7 ~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   85 (271)
                      +.++..++++++.+.+..+. .+++|++|++++|.++. ++     .+..+++|++|++++|.+++ ++. +..+++|++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-----~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~   89 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-----GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-----TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCE
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-----HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCE
Confidence            44555666777766654321 25677777777777764 33     23347777777777777773 333 677777777


Q ss_pred             EEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCcc
Q 043038           86 LKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAI  165 (271)
Q Consensus        86 L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  165 (271)
                      |++++|++++ ++. +.. ++|+.|++++|.+++ ++ .+..+           ++|+.|++++|.+++ ++ .+..+++
T Consensus        90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l-----------~~L~~L~Ls~N~i~~-~~-~l~~l~~  151 (263)
T 1xeu_A           90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHL-----------KNLEILSIRNNKLKS-IV-MLGFLSK  151 (263)
T ss_dssp             EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTC-----------TTCCEEECTTSCCCB-CG-GGGGCTT
T ss_pred             EECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCc-----------ccccEEECCCCcCCC-Ch-HHccCCC
Confidence            7777777763 333 222 677777777777763 32 23333           344555577777764 33 5667777


Q ss_pred             ccEEeccCCccce
Q 043038          166 LQILDIADNNLSG  178 (271)
Q Consensus       166 L~~L~l~~n~l~~  178 (271)
                      |+.|++++|++++
T Consensus       152 L~~L~L~~N~i~~  164 (263)
T 1xeu_A          152 LEVLDLHGNEITN  164 (263)
T ss_dssp             CCEEECTTSCCCB
T ss_pred             CCEEECCCCcCcc
Confidence            7777777777763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.68  E-value=2.8e-18  Score=154.87  Aligned_cols=183  Identities=16%  Similarity=0.136  Sum_probs=109.7

Q ss_pred             CCCcccEEECcCCCCCCCcccc----CC-CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCC----CCcc
Q 043038            6 KFTQLLFRSLDSNNMSGLLPLI----SS-NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE----LPDC   76 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~~----~~-~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~   76 (271)
                      ++++|++|++++|.+.+..+..    ++ +|++|++++|..  ..+..+......+++|++|++++|.+++.    ++..
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~  187 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG--FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL  187 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE--EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC--cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence            5667777777777665443222    22 377777777662  11222332233478888888888877643    2334


Q ss_pred             ccCCCCCCEEEccCCcccc----cCCcccccCCCccEEEccCCccccccCccccCCCCccEEecC---------------
Q 043038           77 WMSDQNLKILKLSNNKFIG----NLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVE---------------  137 (271)
Q Consensus        77 ~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~---------------  137 (271)
                      +..+++|++|++++|.+++    .++..+..+++|+.|++++|.+. .++..+..+++|+.++++               
T Consensus       188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            4567788888888887762    23334556788888888888776 356666667777766652               


Q ss_pred             -CCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceecC-cccccccCCcc
Q 043038          138 -RFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIP-NYINNVTGMVT  192 (271)
Q Consensus       138 -~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~  192 (271)
                       .+++|+.++++++.. +.+|..+..+++|+.|++++|.+++... ..+..+++|+.
T Consensus       267 ~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~  322 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV  322 (592)
T ss_dssp             CCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred             hccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence             334566666665433 2455566666777777777776543222 22344444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=3.3e-16  Score=127.33  Aligned_cols=151  Identities=25%  Similarity=0.277  Sum_probs=121.0

Q ss_pred             CccCCCcccEEECcCCCCCCCcc-ccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLP-LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ   81 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   81 (271)
                      .+.++++|+.|++++|.+..... ..+++|++|++++|.+++ ++.     +..+++|++|++++|+++ .++.. .. +
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~-~~~-----l~~l~~L~~L~L~~N~l~-~l~~~-~~-~  106 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD-LSP-----LKDLTKLEELSVNRNRLK-NLNGI-PS-A  106 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG-----GTTCSSCCEEECCSSCCS-CCTTC-CC-S
T ss_pred             chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC-Chh-----hccCCCCCEEECCCCccC-CcCcc-cc-C
Confidence            46678999999999999885432 126799999999999987 332     445999999999999998 45443 33 8


Q ss_pred             CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhh
Q 043038           82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFC  161 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~  161 (271)
                      +|+.|++++|++++ .+ .+..+++|+.|++++|.+++ ++ .+..++           +|+.|++++|.+++.  ..+.
T Consensus       107 ~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~-----------~L~~L~L~~N~i~~~--~~l~  169 (263)
T 1xeu_A          107 CLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLS-----------KLEVLDLHGNEITNT--GGLT  169 (263)
T ss_dssp             SCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCT-----------TCCEEECTTSCCCBC--TTST
T ss_pred             cccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCC-----------CCCEEECCCCcCcch--HHhc
Confidence            99999999999984 43 58899999999999999984 43 444444           556777999999865  6788


Q ss_pred             cCccccEEeccCCcccee
Q 043038          162 DLAILQILDIADNNLSGA  179 (271)
Q Consensus       162 ~l~~L~~L~l~~n~l~~~  179 (271)
                      .+++|+.|++++|.+.+.
T Consensus       170 ~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          170 RLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TCCCCCEEEEEEEEEECC
T ss_pred             cCCCCCEEeCCCCcccCC
Confidence            899999999999999743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=2.3e-17  Score=152.09  Aligned_cols=161  Identities=24%  Similarity=0.237  Sum_probs=90.2

Q ss_pred             CcccEEECcCCCCCCCccccCCCccEEEccCCccccccc-----hhhhhhccCCCcccEEEccCcccCCCCCccccCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSIS-----HFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQN   82 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~   82 (271)
                      ++++.|++.+|.+......   .++.++++.+.+.....     ...++.+..++.|+.|++++|.+. .+|..+..+++
T Consensus       173 ~~~~~l~L~~n~~~~~~~~---~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~  248 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQA---LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF  248 (727)
T ss_dssp             ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred             CccceEEeeCCCCCcchhh---HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence            3466677777766653222   23333444443322110     012233445788888888888887 66666668888


Q ss_pred             CCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhc
Q 043038           83 LKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCD  162 (271)
Q Consensus        83 L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~  162 (271)
                      |++|++++|.++ .+|..+..+++|+.|++++|.++ .+|..++.+++|+           +|++++|.++ .+|..|..
T Consensus       249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~-----------~L~L~~N~l~-~lp~~~~~  314 (727)
T 4b8c_D          249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK-----------YFYFFDNMVT-TLPWEFGN  314 (727)
T ss_dssp             CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCS-----------EEECCSSCCC-CCCSSTTS
T ss_pred             CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCC-----------EEECCCCCCC-ccChhhhc
Confidence            888888888888 77777888888888888888888 6777776665544           5557888886 66777888


Q ss_pred             CccccEEeccCCccceecCccccc
Q 043038          163 LAILQILDIADNNLSGAIPNYINN  186 (271)
Q Consensus       163 l~~L~~L~l~~n~l~~~~~~~~~~  186 (271)
                      +++|+.|++++|.+++.+|..+..
T Consensus       315 l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          315 LCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             CTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             CCCccEEeCCCCccCCCChHHHhh
Confidence            888888888888887666665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.67  E-value=4.6e-16  Score=117.78  Aligned_cols=137  Identities=26%  Similarity=0.210  Sum_probs=108.3

Q ss_pred             CCCccEEEccCCccc-cccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCC
Q 043038           28 SSNLVYLGLSDNSFL-GSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAF  106 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  106 (271)
                      .++++.|++++|.++ +.+|..+.    .+++|++|++++|.++..  ..+..+++|++|++++|++++.+|..+..+++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~----~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTA----EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCG----GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             cccCCEEECCCCCCChhhHHHHHH----hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            368999999999987 44555443    488999999999999844  77888999999999999998667777777999


Q ss_pred             ccEEEccCCccccccC--ccccCCCCccEEecCCCCcccEEEeccCccCCCCc---hhhhcCccccEEeccCCccceecC
Q 043038          107 LVWLDLGKNRLFGTIP--ATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLP---TRFCDLAILQILDIADNNLSGAIP  181 (271)
Q Consensus       107 L~~l~l~~n~l~~~~~--~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~  181 (271)
                      |+.|++++|.+.+ ++  ..+..++           +|+.|++++|.+++..+   ..+..+++|+.|++++|.+. ..|
T Consensus        97 L~~L~Ls~N~l~~-~~~~~~l~~l~-----------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~  163 (168)
T 2ell_A           97 LTHLNLSGNKLKD-ISTLEPLKKLE-----------CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAP  163 (168)
T ss_dssp             CCEEECBSSSCCS-SGGGGGGSSCS-----------CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCC
T ss_pred             CCEEeccCCccCc-chhHHHHhcCC-----------CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcc
Confidence            9999999999884 33  4454444           45567799999986544   47889999999999999887 555


Q ss_pred             cc
Q 043038          182 NY  183 (271)
Q Consensus       182 ~~  183 (271)
                      ..
T Consensus       164 ~~  165 (168)
T 2ell_A          164 DS  165 (168)
T ss_dssp             SS
T ss_pred             cc
Confidence            43

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=9.6e-16  Score=118.66  Aligned_cols=132  Identities=23%  Similarity=0.224  Sum_probs=91.9

Q ss_pred             cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038           11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN   90 (271)
Q Consensus        11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   90 (271)
                      +.++++++.+...+.....++++|++++|.+++..+..   .+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            67788888876443333457888888888877633321   123477888888888888866677788888888888888


Q ss_pred             CcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCC
Q 043038           91 NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPL  156 (271)
Q Consensus        91 n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~  156 (271)
                      |++++..+..|..+++|+.|++++|.+++..|..+..+++           |++|++++|.+++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS-----------LTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT-----------CCEEECTTCCBCCSG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC-----------CCEEEeCCCCccCcC
Confidence            8887666666777888888888888877666666655544           345557777776543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=4.6e-16  Score=131.65  Aligned_cols=100  Identities=16%  Similarity=0.106  Sum_probs=76.0

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCC-cccccCCCcc
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLP-NSFGSLAFLV  108 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~  108 (271)
                      .-++++-+++.++. +|..++      +++++|++++|+|+...+.+|.++++|++|++++|++...++ ..|.+++++.
T Consensus        10 ~~~~v~C~~~~Lt~-iP~~l~------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~   82 (350)
T 4ay9_X           10 SNRVFLCQESKVTE-IPSDLP------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   82 (350)
T ss_dssp             ETTEEEEESTTCCS-CCTTCC------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred             eCCEEEecCCCCCc-cCcCcC------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence            34667888888875 776543      579999999999995445689999999999999999864454 5678888877


Q ss_pred             E-EEccCCccccccCccccCCCCccEEec
Q 043038          109 W-LDLGKNRLFGTIPATLKNCTALESLDV  136 (271)
Q Consensus       109 ~-l~l~~n~l~~~~~~~~~~l~~L~~L~l  136 (271)
                      + +.+..|.+....|..+..+++|+.+++
T Consensus        83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l  111 (350)
T 4ay9_X           83 EIRIEKANNLLYINPEAFQNLPNLQYLLI  111 (350)
T ss_dssp             EEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred             hhhcccCCcccccCchhhhhccccccccc
Confidence            6 456678888555667777777766654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.64  E-value=1.2e-15  Score=118.15  Aligned_cols=132  Identities=23%  Similarity=0.262  Sum_probs=110.4

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCc-cccCCCCCCEEEccCCcccccCCcccccCCCcc
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPD-CWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLV  108 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  108 (271)
                      .-+++++++|.++. +|..++      ..+++|++++|.++...+. .|..+++|++|++++|.+++..|..|..+++|+
T Consensus         9 ~~~~l~~s~~~l~~-ip~~~~------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A            9 EGTTVDCTGRGLKE-IPRDIP------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCCEEEcCCCCcCc-CccCCC------CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence            45789999999965 665443      3899999999999855443 488999999999999999977788999999999


Q ss_pred             EEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCcccee
Q 043038          109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGA  179 (271)
Q Consensus       109 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  179 (271)
                      .|++++|.+++..+..+..+++           |++|++++|.+++..|..+..+++|+.|++++|.+.+.
T Consensus        82 ~L~Ls~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           82 ELQLGENKIKEISNKMFLGLHQ-----------LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTT-----------CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             EEECCCCcCCccCHHHhcCCCC-----------CCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            9999999999666655665554           55666999999988888999999999999999998754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=7.3e-15  Score=113.78  Aligned_cols=128  Identities=20%  Similarity=0.198  Sum_probs=83.5

Q ss_pred             cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038           11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN   90 (271)
Q Consensus        11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   90 (271)
                      +.++++++.+...++...+++++|++++|.++. +|..+    ..+++|++|++++|.++...+..|.++++|++|++++
T Consensus        13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~-ip~~~----~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTL-VPKEL----SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCS-CCGGG----GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCch-hHHHh----hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            567777777765433334577778888777763 55333    3477777778877777755566677777777777777


Q ss_pred             CcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCC
Q 043038           91 NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG  154 (271)
Q Consensus        91 n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~  154 (271)
                      |+++...+..|..+++|+.|++++|.++...+..+..+++           |+.|++++|.+..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA-----------LSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT-----------CCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc-----------ccEEEeCCCCeec
Confidence            7777655666777777777777777777332223444433           3444566666653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=9.8e-18  Score=150.27  Aligned_cols=193  Identities=20%  Similarity=0.225  Sum_probs=118.6

Q ss_pred             cCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCc-------------cccccchhhhhhccCCCcccEEE-ccCc
Q 043038            5 TKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNS-------------FLGSISHFLCDKINETKRLEALK-LNDN   67 (271)
Q Consensus         5 ~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~-------------~~~~~~~~~~~~~~~~~~L~~L~-l~~n   67 (271)
                      ...++|+.|++++|.+. .+|..   +++|+.|++++|.             ..+..|..    +..+++|+.|+ ++.|
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~----l~~l~~L~~L~~l~~n  420 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET----LQYFSTLKAVDPMRAA  420 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH----HHHHHHHHHHCGGGHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH----HHHHHhcccCcchhhc
Confidence            45667777788877775 44544   3467777776554             22222222    22355566665 4444


Q ss_pred             ccCCCCCc------cccC--CCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCC
Q 043038           68 YLQGELPD------CWMS--DQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERF  139 (271)
Q Consensus        68 ~l~~~~~~------~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~  139 (271)
                      .+. .++.      .+..  ...|+.|++++|.++ .+|. +..+++|+.|++++|.++ .+|..++.+++|+       
T Consensus       421 ~~~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~-------  489 (567)
T 1dce_A          421 YLD-DLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE-------  489 (567)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC-------
T ss_pred             ccc-hhhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCC-------
Confidence            322 1110      0000  124777888888877 3555 777788888888888877 6777666655444       


Q ss_pred             CcccEEEeccCccCCCCchhhhcCccccEEeccCCccceec-CcccccccCCccccccccccccccccccchhhhhhhhc
Q 043038          140 SRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI-PNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKA  218 (271)
Q Consensus       140 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~  218 (271)
                          .|++++|.+++ +| .+..+++|+.|++++|++++.. |..+.                                 
T Consensus       490 ----~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~---------------------------------  530 (567)
T 1dce_A          490 ----VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLV---------------------------------  530 (567)
T ss_dssp             ----EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG---------------------------------
T ss_pred             ----EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh---------------------------------
Confidence                44577788774 55 6777788888888888877443 55444                                 


Q ss_pred             eeccccchhhHHHHHhhHhhhhhcCCccccccc---HhhhccCCCCEEEc
Q 043038          219 SVVSREEVVEYNEILNLVMVTIVSRNDLLKNVP---LEVRNLKATQSLNF  265 (271)
Q Consensus       219 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l  265 (271)
                                   .+++|+.|++++|.+.+..|   ..+..+++|+.|++
T Consensus       531 -------------~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          531 -------------SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -------------GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             -------------cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence                         34556778888888876433   23455888888874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.61  E-value=5.3e-15  Score=114.57  Aligned_cols=129  Identities=24%  Similarity=0.268  Sum_probs=108.6

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW  109 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  109 (271)
                      .-++++.+++.++. +|..+      .+.+++|++++|.++ .+|..|..+++|+.|++++|.++...+..|..+++|+.
T Consensus        11 ~~~~l~~~~~~l~~-ip~~~------~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~   82 (193)
T 2wfh_A           11 LDTVVRCSNKGLKV-LPKGI------PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT   82 (193)
T ss_dssp             ETTEEECTTSCCSS-CCSCC------CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEEcCCCCCCc-CCCCC------CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence            34688999999875 66543      257999999999998 78889999999999999999999777778999999999


Q ss_pred             EEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038          110 LDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       110 l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                      |++++|.+++..+..+..+++           |+.|++++|.++...+..|..+++|+.+++++|.+.
T Consensus        83 L~Ls~N~l~~i~~~~f~~l~~-----------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           83 LILSYNRLRCIPPRTFDGLKS-----------LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             EECCSSCCCBCCTTTTTTCTT-----------CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EECCCCccCEeCHHHhCCCCC-----------CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            999999999655556666554           556669999998666667889999999999999886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.61  E-value=8.9e-17  Score=145.03  Aligned_cols=40  Identities=13%  Similarity=0.034  Sum_probs=23.5

Q ss_pred             HHHhhHhhhhhcCCcccccccH-hhhccCCCCEEEccCCCC
Q 043038          231 EILNLVMVTIVSRNDLLKNVPL-EVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       231 ~~~~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~l~~n~i  270 (271)
                      ..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+
T Consensus       478 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            4456666666666666443333 334566666666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=1.8e-15  Score=112.11  Aligned_cols=127  Identities=24%  Similarity=0.173  Sum_probs=77.4

Q ss_pred             CCccEEEccCCccc-cccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCc
Q 043038           29 SNLVYLGLSDNSFL-GSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL  107 (271)
Q Consensus        29 ~~L~~L~l~~n~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  107 (271)
                      ++++.|++++|.++ +.+|..+    ..+++|++|++++|.++..  ..+..+++|++|++++|.+++.+|..+..+++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLT----DEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCC----TTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred             ccCeEEEccCCcCChhHHHHHH----hhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence            45666666666665 3344332    2366777777777777633  556667777777777777765456556567777


Q ss_pred             cEEEccCCccccc-cCccccCCCCccEEecCCCCcccEEEeccCccCCCCc---hhhhcCccccEEecc
Q 043038          108 VWLDLGKNRLFGT-IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLP---TRFCDLAILQILDIA  172 (271)
Q Consensus       108 ~~l~l~~n~l~~~-~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~  172 (271)
                      +.+++++|.+.+. .+..+..++           +|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        91 ~~L~ls~N~i~~~~~~~~~~~l~-----------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKIKDLSTIEPLKKLE-----------NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCCCSHHHHGGGGGCT-----------TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcCCChHHHHHHhhCC-----------CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            7777777776632 124444443           34455577777765444   356677777777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=4.7e-15  Score=112.16  Aligned_cols=131  Identities=21%  Similarity=0.174  Sum_probs=105.5

Q ss_pred             CCCcccEEECcCCCCC-CCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038            6 KFTQLLFRSLDSNNMS-GLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ   81 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~-~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   81 (271)
                      ..++++.|++++|.+. +.+|..   +++|++|++++|.++..      ..+..+++|++|++++|.++...|..+..++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~   95 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGLDMLAEKLP   95 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence            4578999999999998 566655   56999999999999863      4455699999999999999966888888899


Q ss_pred             CCCEEEccCCcccccC-CcccccCCCccEEEccCCccccccC---ccccCCCCccEEecCCCCcccEEEeccCccC
Q 043038           82 NLKILKLSNNKFIGNL-PNSFGSLAFLVWLDLGKNRLFGTIP---ATLKNCTALESLDVERFSRMVVLNLRSNKFH  153 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~-~~~~~~l~~L~~l~l~~n~l~~~~~---~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~  153 (271)
                      +|++|++++|.+++.. +..+..+++|+.+++++|.+.+..+   ..+..+++|+           +|++++|.++
T Consensus        96 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~-----------~L~l~~n~~~  160 (168)
T 2ell_A           96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT-----------YLDGYDREDQ  160 (168)
T ss_dssp             TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC-----------EETTEETTSC
T ss_pred             CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc-----------EecCCCCChh
Confidence            9999999999998432 2678899999999999999984333   2566566555           5557888776

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=1.4e-14  Score=110.56  Aligned_cols=105  Identities=23%  Similarity=0.186  Sum_probs=60.2

Q ss_pred             ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038           10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS   89 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   89 (271)
                      .+.++++++.+........++++.|++++|.+++..+..+    ..+++|++|++++|.++...+..|..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVF----DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTT----TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHh----cCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            3556666666654433334566666666666654222222    235666666666666664444445666666666666


Q ss_pred             CCcccccCCcccccCCCccEEEccCCccc
Q 043038           90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~  118 (271)
                      +|++++..+..+..+++|+.+++++|.++
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  113 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLK  113 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcce
Confidence            66666444444555666666666666665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=2e-15  Score=126.69  Aligned_cols=182  Identities=13%  Similarity=0.108  Sum_probs=126.4

Q ss_pred             CCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCcc----ccccCccccCCCCc
Q 043038           56 TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL----FGTIPATLKNCTAL  131 (271)
Q Consensus        56 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l----~~~~~~~~~~l~~L  131 (271)
                      +++|+++++.+ .++...+.+|.++++|+.++++.|.+....+..|....++..+....+..    .......+..+..+
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            78899999988 77755667888899999999998887756666777766666666555221    10011222223333


Q ss_pred             c--------------------------EEec-------------CCCCcccEEEeccCccCCCCchhhhcCccccEEecc
Q 043038          132 E--------------------------SLDV-------------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIA  172 (271)
Q Consensus       132 ~--------------------------~L~l-------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  172 (271)
                      +                          .+.+             ..+++|+.+++++|.++...+.+|..+.+|+.+++.
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence            2                          2222             127789999999988886666778889999999998


Q ss_pred             CCccceecCcccccccCCc-c---ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccc
Q 043038          173 DNNLSGAIPNYINNVTGMV-T---TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLK  248 (271)
Q Consensus       173 ~n~l~~~~~~~~~~~~~L~-~---~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~  248 (271)
                      +| ++...+.+|.++..|+ .   .+.+..++                          ...|.+|++|+.++++.|.+..
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~~l~~I~--------------------------~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPASVTAIE--------------------------FGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECTTCCEEC--------------------------TTTTTTCTTEEEEEECSSCCCE
T ss_pred             cc-cceehHHHhhCChhccEEEEEcccceEEc--------------------------hhhhhCCccCCEEEeCCCccCc
Confidence            87 6645567788888877 4   22333221                          1223578999999999999987


Q ss_pred             cccHhhhccCCCCEEEc
Q 043038          249 NVPLEVRNLKATQSLNF  265 (271)
Q Consensus       249 ~~~~~l~~l~~L~~L~l  265 (271)
                      ..+..|.+|++|+.++.
T Consensus       312 I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          312 LGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECTTTTCTTCCCCEEEC
T ss_pred             cchhhhcCCcchhhhcc
Confidence            67779999999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=3.9e-15  Score=110.32  Aligned_cols=125  Identities=23%  Similarity=0.183  Sum_probs=103.7

Q ss_pred             CCCcccEEECcCCCCC-CCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038            6 KFTQLLFRSLDSNNMS-GLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ   81 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~-~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   81 (271)
                      ..++++.|++++|.+. +.+|..   +++|++|++++|.+++.      ..+..+++|++|++++|.+++..|..+..++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   88 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP   88 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence            4578999999999998 566654   57999999999999863      4456699999999999999966888888899


Q ss_pred             CCCEEEccCCccccc-CCcccccCCCccEEEccCCccccccC---ccccCCCCccEEec
Q 043038           82 NLKILKLSNNKFIGN-LPNSFGSLAFLVWLDLGKNRLFGTIP---ATLKNCTALESLDV  136 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n~l~~~~~---~~~~~l~~L~~L~l  136 (271)
                      +|++|++++|.+++. .+..+..+++|+.+++++|.+.+..+   ..+..+++|+.|++
T Consensus        89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            999999999999853 23678899999999999999985443   36777888877763

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=1.8e-14  Score=109.91  Aligned_cols=133  Identities=20%  Similarity=0.161  Sum_probs=106.6

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW  109 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  109 (271)
                      ..+.++++++.++. +|..+      .+.+++|++++|.++...+..|..+++|++|++++|.++...+..+..+++|+.
T Consensus         8 ~~~~l~~~~~~l~~-~p~~~------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (177)
T 2o6r_A            8 SGTEIRCNSKGLTS-VPTGI------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI   80 (177)
T ss_dssp             ETTEEECCSSCCSS-CCTTC------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEEecCCCCcc-CCCCC------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence            46788999999875 55433      368999999999999666667889999999999999999666666789999999


Q ss_pred             EEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccceec
Q 043038          110 LDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAI  180 (271)
Q Consensus       110 l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  180 (271)
                      |++++|.+++..+..+..++           +|++|++++|.+++..+..+..+++|+.+++++|.+.+..
T Consensus        81 L~l~~N~l~~~~~~~~~~l~-----------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           81 LYLHENKLQSLPNGVFDKLT-----------QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             EECCSSCCCCCCTTTTTTCT-----------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             EECCCCCccccCHHHhhCCc-----------ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            99999999854444455555           4556669999998666666788999999999999987543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=2.1e-17  Score=148.15  Aligned_cols=175  Identities=19%  Similarity=0.176  Sum_probs=109.0

Q ss_pred             CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcc-------------cCCCCCccccCCCCCCEEE-ccCCccc
Q 043038           29 SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNY-------------LQGELPDCWMSDQNLKILK-LSNNKFI   94 (271)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~   94 (271)
                      ++++.|++++|.++. +|..+..    +++|++|++++|.             ..+..|..+..+++|+.|+ ++.|.+.
T Consensus       349 ~~L~~L~Ls~n~L~~-Lp~~i~~----l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          349 EQLFRCELSVEKSTV-LQSELES----CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             TTSSSCCCCHHHHHH-HHHHHHH----HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccceeccCChhhHHh-hHHHHHH----HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            466667777777653 4444443    6667777766553             2334455555666666666 4444332


Q ss_pred             ccCCc------cccc--CCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccc
Q 043038           95 GNLPN------SFGS--LAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAIL  166 (271)
Q Consensus        95 ~~~~~------~~~~--l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  166 (271)
                       .++.      .+..  ...|+.|++++|.++ .+|. ++.++           +|+.|++++|.++ .+|..++.+++|
T Consensus       424 -~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~-----------~L~~L~Ls~N~l~-~lp~~~~~l~~L  488 (567)
T 1dce_A          424 -DLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLL-----------LVTHLDLSHNRLR-ALPPALAALRCL  488 (567)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGT-----------TCCEEECCSSCCC-CCCGGGGGCTTC
T ss_pred             -hhhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccc-----------cCcEeecCccccc-ccchhhhcCCCC
Confidence             1100      0110  124666777777666 3443 44443           3444557777776 566677777777


Q ss_pred             cEEeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcc
Q 043038          167 QILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDL  246 (271)
Q Consensus       167 ~~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  246 (271)
                      +.|++++|.+++ +| .++                                              .+++|+.|+|++|.+
T Consensus       489 ~~L~Ls~N~l~~-lp-~l~----------------------------------------------~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          489 EVLQASDNALEN-VD-GVA----------------------------------------------NLPRLQELLLCNNRL  520 (567)
T ss_dssp             CEEECCSSCCCC-CG-GGT----------------------------------------------TCSSCCEEECCSSCC
T ss_pred             CEEECCCCCCCC-Cc-ccC----------------------------------------------CCCCCcEEECCCCCC
Confidence            777777777763 33 222                                              456678899999999


Q ss_pred             cccc-cHhhhccCCCCEEEccCCCCC
Q 043038          247 LKNV-PLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       247 ~~~~-~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      .+.. |..+..+++|+.|++++|.|+
T Consensus       521 ~~~~~p~~l~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          521 QQSAAIQPLVSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCCcHHHhcCCCCCEEEecCCcCC
Confidence            8865 999999999999999999874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=1.8e-15  Score=139.48  Aligned_cols=139  Identities=26%  Similarity=0.298  Sum_probs=106.1

Q ss_pred             CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCc
Q 043038           28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL  107 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  107 (271)
                      +..|+.|++++|.+.. +|..+.    +++.|++|+|++|.++ .+|..|..+++|++|++++|+++ .+|..+..+++|
T Consensus       223 l~~L~~L~Ls~n~l~~-l~~~~~----~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  295 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFN-ISANIF----KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL  295 (727)
T ss_dssp             CCCCCEEECTTSCCSC-CCGGGG----GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred             CCCCcEEECCCCCCCC-CChhhc----CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence            4689999999999874 665444    3889999999999998 88888999999999999999998 778889999999


Q ss_pred             cEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCc-cccEEeccCCccceecCcccc
Q 043038          108 VWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLA-ILQILDIADNNLSGAIPNYIN  185 (271)
Q Consensus       108 ~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~  185 (271)
                      +.|++++|.+. .+|..++.+++|+           .|++++|.+++.+|..+.... ....+++++|.+++.+|..+.
T Consensus       296 ~~L~L~~N~l~-~lp~~~~~l~~L~-----------~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~  362 (727)
T 4b8c_D          296 KYFYFFDNMVT-TLPWEFGNLCNLQ-----------FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR  362 (727)
T ss_dssp             SEEECCSSCCC-CCCSSTTSCTTCC-----------CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred             CEEECCCCCCC-ccChhhhcCCCcc-----------EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence            99999999987 7787777766555           444788888776666665432 122356666766666665443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.55  E-value=6.2e-16  Score=139.49  Aligned_cols=107  Identities=18%  Similarity=0.036  Sum_probs=63.2

Q ss_pred             CCCcccEEECcCCCCCCCccc----cCCCccEEEccCC-ccccccchhhhhhccCCCcccEEEccCcccCCCCCccc---
Q 043038            6 KFTQLLFRSLDSNNMSGLLPL----ISSNLVYLGLSDN-SFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCW---   77 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---   77 (271)
                      .+++|+.|++++|.+.+..+.    .+++|++|++++| .++..   .+...+.++++|++|++++|.+++..+..+   
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~  179 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD---GLAAIAATCRNLKELDLRESDVDDVSGHWLSHF  179 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH---HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH---HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence            567888888888877654332    2568888888887 43321   122222247788888888887664333322   


Q ss_pred             -cCCCCCCEEEccCCc--ccc-cCCcccccCCCccEEEccCC
Q 043038           78 -MSDQNLKILKLSNNK--FIG-NLPNSFGSLAFLVWLDLGKN  115 (271)
Q Consensus        78 -~~l~~L~~L~l~~n~--~~~-~~~~~~~~l~~L~~l~l~~n  115 (271)
                       ..+++|++|++++|.  +.. .++..+..+++|+.|++++|
T Consensus       180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence             255677788877775  210 01111233567777777666

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=2e-14  Score=109.60  Aligned_cols=130  Identities=19%  Similarity=0.174  Sum_probs=91.2

Q ss_pred             CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCc
Q 043038           28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL  107 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  107 (271)
                      ..+++.|++++|.++. ++....    ..++|++|++++|.+++ + ..|..+++|++|++++|.++...+..+..+++|
T Consensus        18 ~~~L~~L~l~~n~l~~-i~~~~~----~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV-IENLGA----TLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGG----GTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCceEEEeeCCCCch-hHHhhh----cCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            3477778888877764 333211    13478888888888873 3 567788888888888888885444555778888


Q ss_pred             cEEEccCCccccccCc--cccCCCCccEEecCCCCcccEEEeccCccCCCCch----hhhcCccccEEeccCCccc
Q 043038          108 VWLDLGKNRLFGTIPA--TLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPT----RFCDLAILQILDIADNNLS  177 (271)
Q Consensus       108 ~~l~l~~n~l~~~~~~--~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~  177 (271)
                      +.|++++|.+. .+|.  .+..++           +|+.|++++|.++ ..|.    .+..+++|+.+++++|...
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~-----------~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLK-----------SLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCT-----------TCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CEEECCCCcCC-cchhhHhhhcCC-----------CCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            88888888886 4554  444443           4556668888887 3454    4788889999999888765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=4.2e-14  Score=107.78  Aligned_cols=112  Identities=20%  Similarity=0.164  Sum_probs=69.2

Q ss_pred             CccCCCcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccC
Q 043038            3 NLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMS   79 (271)
Q Consensus         3 ~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   79 (271)
                      .+.++.+|+.|++++|.+... |..   .++|++|++++|.+++.      ..+..+++|++|++++|.++...+..|..
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~   86 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICRIGEGLDQA   86 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccccCcchhhc
Confidence            345566677777777766643 322   23677777777776641      23444677777777777776333344466


Q ss_pred             CCCCCEEEccCCcccccCCc--ccccCCCccEEEccCCccccccCc
Q 043038           80 DQNLKILKLSNNKFIGNLPN--SFGSLAFLVWLDLGKNRLFGTIPA  123 (271)
Q Consensus        80 l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~l~l~~n~l~~~~~~  123 (271)
                      +++|++|++++|+++ .+|.  .+..+++|+.+++++|.+. ..|.
T Consensus        87 l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~  130 (176)
T 1a9n_A           87 LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKH  130 (176)
T ss_dssp             CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred             CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHh
Confidence            777777777777775 3443  5666677777777777766 3444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=2.9e-13  Score=102.55  Aligned_cols=104  Identities=18%  Similarity=0.115  Sum_probs=47.9

Q ss_pred             cEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038           11 LFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN   90 (271)
Q Consensus        11 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   90 (271)
                      +.+++++|.+...+....+++++|++++|.+++..|..+.    .+++|++|++++|+++...+..|..+++|++|++++
T Consensus        12 ~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~----~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFD----RLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTT----TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhc----CcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4455555555443222234555555555555443232222    244555555555555433333444455555555555


Q ss_pred             CcccccCCcccccCCCccEEEccCCccc
Q 043038           91 NKFIGNLPNSFGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        91 n~~~~~~~~~~~~l~~L~~l~l~~n~l~  118 (271)
                      |+++...+..|..+++|+.+++++|.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5554333333444455555555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=7.5e-13  Score=100.65  Aligned_cols=61  Identities=30%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             cccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccc
Q 043038           58 RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~  118 (271)
                      .|++|++++|.+++..|..|..+++|++|++++|++++..+..|..+++|+.|++++|.+.
T Consensus        34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence            4455555555554333444455555555555555554333333444555555555555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=1.1e-15  Score=118.91  Aligned_cols=107  Identities=22%  Similarity=0.233  Sum_probs=59.9

Q ss_pred             CCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEe
Q 043038           56 TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLD  135 (271)
Q Consensus        56 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~  135 (271)
                      ++.|++|++++|.++ .+| .+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+ +| .+..++      
T Consensus        47 l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~------  115 (198)
T 1ds9_A           47 LKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLV------  115 (198)
T ss_dssp             TTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHH------
T ss_pred             CCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCC------
Confidence            666666666666666 344 5566666666666666666 455555555666666666666653 33 233222      


Q ss_pred             cCCCCcccEEEeccCccCCCCc-hhhhcCccccEEeccCCccce
Q 043038          136 VERFSRMVVLNLRSNKFHGPLP-TRFCDLAILQILDIADNNLSG  178 (271)
Q Consensus       136 l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~  178 (271)
                           +|+.|++++|.+++..+ ..+..+++|+.+++++|.+.+
T Consensus       116 -----~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          116 -----NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             -----HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             -----CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence                 34444466666653211 245566666666666666553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=5e-15  Score=115.17  Aligned_cols=151  Identities=20%  Similarity=0.217  Sum_probs=116.8

Q ss_pred             ccCCCcccEEECcCCCCCCCccc------c---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPL------I---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELP   74 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~------~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~   74 (271)
                      +.+...++.++++++.+.+..|.      .   +++|++|++++|.+++ +| .+..    +++|++|++++|.++ .+|
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~----l~~L~~L~l~~n~l~-~l~   86 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSG----MENLRILSLGRNLIK-KIE   86 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHH----HTTCCEEEEEEEEEC-SCS
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-cccc----CCCCCEEECCCCCcc-ccc
Confidence            34456777788888888877665      3   6799999999999987 56 4443    899999999999998 778


Q ss_pred             ccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCc--cccCCCCccEEecCCCCcccEEEeccCcc
Q 043038           75 DCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA--TLKNCTALESLDVERFSRMVVLNLRSNKF  152 (271)
Q Consensus        75 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~--~~~~l~~L~~L~l~~~~~L~~L~l~~n~l  152 (271)
                      ..+..+++|++|++++|++++ +| .+..+++|+.+++++|.+.+ ++.  .+..++           +|++|++++|.+
T Consensus        87 ~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~-----------~L~~L~l~~N~l  152 (198)
T 1ds9_A           87 NLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALD-----------KLEDLLLAGNPL  152 (198)
T ss_dssp             SHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTT-----------TCSEEEECSCHH
T ss_pred             chhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCC-----------CCCEEEecCCcc
Confidence            887788999999999999984 44 58888999999999999883 332  444444           556677999998


Q ss_pred             CCCCch----------hhhcCccccEEeccCCccc
Q 043038          153 HGPLPT----------RFCDLAILQILDIADNNLS  177 (271)
Q Consensus       153 ~~~~~~----------~~~~l~~L~~L~l~~n~l~  177 (271)
                      ++..|.          .+..+++|+.|+  ++.++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            754433          377888999887  55554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=2.3e-12  Score=97.58  Aligned_cols=107  Identities=21%  Similarity=0.203  Sum_probs=64.0

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW  109 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  109 (271)
                      ..+.+++++|.++. +|..+      .+.+++|++++|.+++..|..|..+++|++|++++|+++...+..|..+++|+.
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~   82 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGI------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ   82 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCC------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEEeCCCCcCc-cCccC------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence            45667777777664 44332      246677777777776555666667777777777777776444455566677777


Q ss_pred             EEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCC
Q 043038          110 LDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG  154 (271)
Q Consensus       110 l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~  154 (271)
                      |++++|.+++..+..+..+++           |+.|++++|.++.
T Consensus        83 L~L~~N~l~~~~~~~~~~l~~-----------L~~L~L~~N~~~c  116 (170)
T 3g39_A           83 LSLNDNQLKSIPRGAFDNLKS-----------LTHIWLLNNPWDC  116 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTT-----------CCEEECCSSCBCT
T ss_pred             EECCCCccCEeCHHHhcCCCC-----------CCEEEeCCCCCCC
Confidence            777777666333333444433           3344466666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=5.1e-12  Score=96.01  Aligned_cols=104  Identities=22%  Similarity=0.268  Sum_probs=86.6

Q ss_pred             ccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCc-cccCCCCccEEecC
Q 043038           59 LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA-TLKNCTALESLDVE  137 (271)
Q Consensus        59 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~-~~~~l~~L~~L~l~  137 (271)
                      -+.+++++|.++ .+|..+.  +.|+.|++++|++++..|..|..+++|+.|++++|.+++ +|. .+..++        
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~--------   81 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLT--------   81 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT--------
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcc--------
Confidence            478899999998 7777653  889999999999997778889999999999999999994 454 345555        


Q ss_pred             CCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc
Q 043038          138 RFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       138 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                         +|+.|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus        82 ---~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           82 ---QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ---TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ---hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence               4556669999999666666999999999999999987

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.32  E-value=1e-12  Score=110.04  Aligned_cols=170  Identities=10%  Similarity=0.006  Sum_probs=115.1

Q ss_pred             CccccC--------CCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCC-------
Q 043038           74 PDCWMS--------DQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVER-------  138 (271)
Q Consensus        74 ~~~~~~--------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~-------  138 (271)
                      +.+|.+        +++|+.+++.. .++...+..|.++++|+.+++..|.+....+..+..+.++..+....       
T Consensus        86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~  164 (329)
T 3sb4_A           86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFK  164 (329)
T ss_dssp             TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTS
T ss_pred             HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcc
Confidence            456777        99999999999 77756677899999999999999988755566777777666665421       


Q ss_pred             ----------CCccc-EEEe-------------------------ccCccCCCCchhhhcCccccEEeccCCccceecCc
Q 043038          139 ----------FSRMV-VLNL-------------------------RSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPN  182 (271)
Q Consensus       139 ----------~~~L~-~L~l-------------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  182 (271)
                                +..|+ .+.+                         .++-...........+++|+.+++++|+++.....
T Consensus       165 ~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~  244 (329)
T 3sb4_A          165 NRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF  244 (329)
T ss_dssp             TTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT
T ss_pred             ccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh
Confidence                      12222 1222                         11100000000111378999999999999855566


Q ss_pred             ccccccCCcc---ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHh-hhhhcCCcccccccHhhhccC
Q 043038          183 YINNVTGMVT---TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVM-VTIVSRNDLLKNVPLEVRNLK  258 (271)
Q Consensus       183 ~~~~~~~L~~---~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~l~~l~  258 (271)
                      +|.++..|+.   .+.+..++.                          ..|.++++|+ .+++.+ .+....+..|.+|+
T Consensus       245 aF~~~~~L~~l~l~~ni~~I~~--------------------------~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~  297 (329)
T 3sb4_A          245 TFAQKKYLLKIKLPHNLKTIGQ--------------------------RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD  297 (329)
T ss_dssp             TTTTCTTCCEEECCTTCCEECT--------------------------TTTTTCTTCCEEEEECT-TCCEECTTTTTTCT
T ss_pred             hhhCCCCCCEEECCcccceehH--------------------------HHhhCChhccEEEEEcc-cceEEchhhhhCCc
Confidence            7888888877   222333211                          2234788898 999987 67666678999999


Q ss_pred             CCCEEEccCCCCC
Q 043038          259 ATQSLNFSHNTFT  271 (271)
Q Consensus       259 ~L~~L~l~~n~i~  271 (271)
                      +|+.+++++|+++
T Consensus       298 ~L~~l~l~~n~i~  310 (329)
T 3sb4_A          298 NLRYVLATGDKIT  310 (329)
T ss_dssp             TEEEEEECSSCCC
T ss_pred             cCCEEEeCCCccC
Confidence            9999999988764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=6.3e-14  Score=119.35  Aligned_cols=138  Identities=17%  Similarity=0.102  Sum_probs=66.2

Q ss_pred             CCccEEEccCCccccccchhhhhhccCC-CcccEEEccCcccCCCCCccc-cCCCCCCEEEccCCcccccCCccc-----
Q 043038           29 SNLVYLGLSDNSFLGSISHFLCDKINET-KRLEALKLNDNYLQGELPDCW-MSDQNLKILKLSNNKFIGNLPNSF-----  101 (271)
Q Consensus        29 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~-----  101 (271)
                      +.++.|++++|.++......+...+... +.|++|++++|.++......+ ..+.+|+.|++++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            3566666666666543333444433322 466666666666542221221 223456666666666653222222     


Q ss_pred             ccCCCccEEEccCCccccc----cCccccCCCCccEEecCCCCcccEEEeccCccCCC----CchhhhcCccccEEeccC
Q 043038          102 GSLAFLVWLDLGKNRLFGT----IPATLKNCTALESLDVERFSRMVVLNLRSNKFHGP----LPTRFCDLAILQILDIAD  173 (271)
Q Consensus       102 ~~l~~L~~l~l~~n~l~~~----~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~  173 (271)
                      ...++|+.|++++|.+++.    ++..+..+           ++|++|++++|.+++.    ++..+...+.|+.|++++
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~-----------~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~  220 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGN-----------TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY  220 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTC-----------SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcC-----------CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence            1235566666666665432    11122222           2344444666665421    133344455666666666


Q ss_pred             Cccc
Q 043038          174 NNLS  177 (271)
Q Consensus       174 n~l~  177 (271)
                      |.++
T Consensus       221 N~i~  224 (372)
T 3un9_A          221 NGAG  224 (372)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            6554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=7.6e-13  Score=112.63  Aligned_cols=164  Identities=20%  Similarity=0.108  Sum_probs=116.0

Q ss_pred             CCcccEEECcCCCCCCCcccc--------CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccc-
Q 043038            7 FTQLLFRSLDSNNMSGLLPLI--------SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCW-   77 (271)
Q Consensus         7 ~~~L~~L~l~~n~~~~~~~~~--------~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-   77 (271)
                      ++.++.|++++|.++......        .++|+.|++++|.++......+...   +++|++|++++|.++......+ 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~---L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV---FLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHH---HHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHH---HHhccHhhcCCCCCCHHHHHHHH
Confidence            467899999999987543221        2589999999999875444444332   4579999999999974333333 


Q ss_pred             ----cCCCCCCEEEccCCccccc----CCcccccCCCccEEEccCCcccccc----CccccCCCCccEEecCCCCcccEE
Q 043038           78 ----MSDQNLKILKLSNNKFIGN----LPNSFGSLAFLVWLDLGKNRLFGTI----PATLKNCTALESLDVERFSRMVVL  145 (271)
Q Consensus        78 ----~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~l~~~~----~~~~~~l~~L~~L~l~~~~~L~~L  145 (271)
                          ...++|++|++++|.++..    ++..+...++|+.|++++|.+.+..    +..+...           ++|+.|
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~-----------~~L~~L  216 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-----------RQLQEL  216 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC-----------SCCCEE
T ss_pred             HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC-----------CCcCeE
Confidence                2468899999999998742    3344567889999999999987532    2333333           356677


Q ss_pred             EeccCccCCC----CchhhhcCccccEEeccCCccceecCccc
Q 043038          146 NLRSNKFHGP----LPTRFCDLAILQILDIADNNLSGAIPNYI  184 (271)
Q Consensus       146 ~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  184 (271)
                      ++++|.+++.    ++..+...+.|+.|++++|.++......+
T Consensus       217 ~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          217 NVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             ECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             ECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence            7999998743    33445567899999999999874433333

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.25  E-value=6.8e-11  Score=101.55  Aligned_cols=130  Identities=15%  Similarity=0.121  Sum_probs=55.4

Q ss_pred             cccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-
Q 043038           58 RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-  136 (271)
Q Consensus        58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-  136 (271)
                      .|+++.+.. .++...+.+|.++.+|+.++++.|.++......|. ..+|+.+.+..+ ++......+..+++|+.+++ 
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            345555443 33323334455555555555555444422222232 344455544432 22122233444444444443 


Q ss_pred             -----------CCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccc-----eecCcccccccCCcc
Q 043038          137 -----------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS-----GAIPNYINNVTGMVT  192 (271)
Q Consensus       137 -----------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~  192 (271)
                                 .. .+|+.+.+. +.++.....+|..+++|+.+.+.++.+.     .....+|..|.+|+.
T Consensus       235 ~~l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~  304 (401)
T 4fdw_A          235 ENVSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR  304 (401)
T ss_dssp             TTCCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred             CCccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence                       11 234455452 2233233445555555666655554432     123344455554444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.22  E-value=1.5e-10  Score=99.34  Aligned_cols=227  Identities=7%  Similarity=0.015  Sum_probs=151.6

Q ss_pred             ccCCCcccEEECcCCCCCCCccccC--CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPLIS--SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ   81 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   81 (271)
                      |.+. +|+.+++..+ +......++  ++|+.+.+.. .++....    .+|.++++|+.+++++|.++.....+|. ..
T Consensus       132 F~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~----~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~  203 (401)
T 4fdw_A          132 FRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKE----DIFYYCYNLKKADLSKTKITKLPASTFV-YA  203 (401)
T ss_dssp             TTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECS----STTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred             cccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehH----HHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence            4554 5777777655 443333333  4788888875 4443222    2344589999999999998855555665 68


Q ss_pred             CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec------------CCCCcccEEEecc
Q 043038           82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV------------ERFSRMVVLNLRS  149 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l------------~~~~~L~~L~l~~  149 (271)
                      +|+.+.+..+ ++......|..+++|+.+.+..+ ++......+.. .+|+.+.+            ..+++|+.+++.+
T Consensus       204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEES
T ss_pred             ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCC
Confidence            9999999855 55455677888999999999875 34233344444 56777765            6678899999988


Q ss_pred             CccC-----CCCchhhhcCccccEEeccCCccceecCcccccccCCcc---ccccccccccccccccchhhhhhhhceec
Q 043038          150 NKFH-----GPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT---TNSFSRSAQQHLHVPLDVDVILMEKASVV  221 (271)
Q Consensus       150 n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~---~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (271)
                      +.+.     ...+..|..+++|+.+.+.+ .++.....+|.+|..|+.   .+.+..++.                    
T Consensus       281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~--------------------  339 (401)
T 4fdw_A          281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPANVTQINF--------------------  339 (401)
T ss_dssp             SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTTCCEECT--------------------
T ss_pred             ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECccccEEcH--------------------
Confidence            7764     23456788899999999984 466455667777777766   222222211                    


Q ss_pred             cccchhhHHHHHhhHhhhhhcCCcccccccHhhhccC-CCCEEEccCCC
Q 043038          222 SREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLK-ATQSLNFSHNT  269 (271)
Q Consensus       222 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~  269 (271)
                            ..+..+ +|+.+++.+|.........|.+++ .++.|++..+.
T Consensus       340 ------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          340 ------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             ------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             ------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence                  112356 788899988887665566777774 67888876653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=1.5e-10  Score=97.44  Aligned_cols=106  Identities=19%  Similarity=0.137  Sum_probs=83.4

Q ss_pred             cEEEccCC-ccccccchhhhhhccCCCcccEEEccC-cccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038           32 VYLGLSDN-SFLGSISHFLCDKINETKRLEALKLND-NYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW  109 (271)
Q Consensus        32 ~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  109 (271)
                      ..++.+++ .++. +|. ++    .+++|++|+|++ |.+++..+..|.++++|+.|++++|++++..|..|..+++|+.
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~----~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~   84 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LP----GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SC----SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CEEEcCCCCCCCc-cCC-CC----CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCE
Confidence            45688887 7875 665 44    488999999996 9999666688999999999999999999888888999999999


Q ss_pred             EEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCC
Q 043038          110 LDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGP  155 (271)
Q Consensus       110 l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~  155 (271)
                      |++++|.+. .+|..+.....           |+.|++.+|.++..
T Consensus        85 L~l~~N~l~-~~~~~~~~~~~-----------L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           85 LNLSFNALE-SLSWKTVQGLS-----------LQELVLSGNPLHCS  118 (347)
T ss_dssp             EECCSSCCS-CCCSTTTCSCC-----------CCEEECCSSCCCCC
T ss_pred             EeCCCCccc-eeCHHHcccCC-----------ceEEEeeCCCccCC
Confidence            999999998 45544332221           55677888988753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.09  E-value=5.8e-10  Score=93.87  Aligned_cols=102  Identities=20%  Similarity=0.111  Sum_probs=80.9

Q ss_pred             cEEECcCC-CCCCCcccc--CCCccEEEccC-CccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEE
Q 043038           11 LFRSLDSN-NMSGLLPLI--SSNLVYLGLSD-NSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKIL   86 (271)
Q Consensus        11 ~~L~l~~n-~~~~~~~~~--~~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   86 (271)
                      ..++++++ .+.. +|..  +.+|+.|++++ |.+++..+..    |..+++|+.|+|++|.+++..|..|..+++|++|
T Consensus        11 ~~v~~~~~n~l~~-ip~l~~~~~L~~L~l~~~n~l~~~~~~~----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             SCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CEEEcCCCCCCCc-cCCCCCCCCeeEEEccCCCCCCCcChhH----hccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            35688888 7876 4442  24799999996 9988744444    4459999999999999998788889999999999


Q ss_pred             EccCCcccccCCcccccCCCccEEEccCCccc
Q 043038           87 KLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        87 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~  118 (271)
                      ++++|++++..+..|..++ |+.|++.+|.+.
T Consensus        86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             eCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            9999999955555555555 999999999876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=1.7e-09  Score=91.37  Aligned_cols=143  Identities=19%  Similarity=0.158  Sum_probs=79.5

Q ss_pred             CCCccEEEccCCccccc-c----chhhhhhccCCCcccEEEccCcc-cCCCCCccccCCCCCCEEEccCCcccccCCccc
Q 043038           28 SSNLVYLGLSDNSFLGS-I----SHFLCDKINETKRLEALKLNDNY-LQGELPDCWMSDQNLKILKLSNNKFIGNLPNSF  101 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~~~-~----~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  101 (271)
                      +++|+.|.+.+...... +    ...+...+..++.|++|.+++|. +.  ++. + .+++|+.|++..|.+.......+
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence            46888888865432100 0    11133334457888888888773 32  222 3 37788888888887653322233


Q ss_pred             c--cCCCccEEEccCC--ccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhh---cCccccEEeccCC
Q 043038          102 G--SLAFLVWLDLGKN--RLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFC---DLAILQILDIADN  174 (271)
Q Consensus       102 ~--~l~~L~~l~l~~n--~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n  174 (271)
                      .  .+|+|+.|+++.+  ...+.  ..+..+..+  +....+++|+.|++.+|.+++..+..+.   .+++|+.|++++|
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~--~~~~~l~~~--l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFD--GDMNVFRPL--FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG  289 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCC--SCGGGTGGG--SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred             HHccCCCCcEEEEeccccccccc--hhHHHHHHH--HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence            3  5788888887532  11111  011111111  1112466777888888877643333333   4567888888887


Q ss_pred             ccce
Q 043038          175 NLSG  178 (271)
Q Consensus       175 ~l~~  178 (271)
                      .+.+
T Consensus       290 ~L~d  293 (362)
T 2ra8_A          290 VLTD  293 (362)
T ss_dssp             CCBH
T ss_pred             CCCh
Confidence            7763

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.87  E-value=1.8e-09  Score=91.27  Aligned_cols=187  Identities=14%  Similarity=0.140  Sum_probs=99.1

Q ss_pred             CccEEEccCCcccc-cc---chhhhhhccCCCcccEEEccCcccC---------CCCCccccCCCCCCEEEccCCccccc
Q 043038           30 NLVYLGLSDNSFLG-SI---SHFLCDKINETKRLEALKLNDNYLQ---------GELPDCWMSDQNLKILKLSNNKFIGN   96 (271)
Q Consensus        30 ~L~~L~l~~n~~~~-~~---~~~~~~~~~~~~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~~~~~   96 (271)
                      .++.|.+....+.+ ..   -..+.....++++|+.|.+......         +.+...+..+++|+.|.+++|.-. .
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~  186 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-S  186 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-B
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-e
Confidence            56677777554331 11   1122333334778888887654321         113344556778888888776311 2


Q ss_pred             CCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEecc--CccCCC-----Cchhh--hcCcccc
Q 043038           97 LPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRS--NKFHGP-----LPTRF--CDLAILQ  167 (271)
Q Consensus        97 ~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~--n~l~~~-----~~~~~--~~l~~L~  167 (271)
                      ++. + .+++|+.|++..+.+.......+..         ..+|+|+.|+|+.  +...+.     +...+  ..+++|+
T Consensus       187 l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~---------~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr  255 (362)
T 2ra8_A          187 IGK-K-PRPNLKSLEIISGGLPDSVVEDILG---------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK  255 (362)
T ss_dssp             CCS-C-BCTTCSEEEEECSBCCHHHHHHHHH---------SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCC
T ss_pred             ecc-c-cCCCCcEEEEecCCCChHHHHHHHH---------ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcC
Confidence            232 3 3678888888777665332222220         1234455555542  221111     11122  2467888


Q ss_pred             EEeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCccc
Q 043038          168 ILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLL  247 (271)
Q Consensus       168 ~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~  247 (271)
                      .|++.+|.+.+..+..+...                                           ..+++|+.|+|+.|.+.
T Consensus       256 ~L~L~~~~i~~~~~~~la~a-------------------------------------------~~~~~L~~LdLs~n~L~  292 (362)
T 2ra8_A          256 WLGIVDAEEQNVVVEMFLES-------------------------------------------DILPQLETMDISAGVLT  292 (362)
T ss_dssp             EEEEESCTTHHHHHHHHHHC-------------------------------------------SSGGGCSEEECCSSCCB
T ss_pred             EEeCCCCCCchHHHHHHHhC-------------------------------------------ccCCCCCEEECCCCCCC
Confidence            88888877753222111100                                           13567777888777776


Q ss_pred             cc----ccHhhhccCCCCEEEccCCCCC
Q 043038          248 KN----VPLEVRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       248 ~~----~~~~l~~l~~L~~L~l~~n~i~  271 (271)
                      +.    ++..+..+++|+.|++++|.|+
T Consensus       293 d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          293 DEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             HHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             hHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            54    3334456778888888777764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.73  E-value=2.8e-09  Score=81.58  Aligned_cols=118  Identities=14%  Similarity=0.172  Sum_probs=76.6

Q ss_pred             CCccEEEccCC-ccccccchhhhhhccCCCcccEEEccCcccCCC----CCccccCCCCCCEEEccCCccccc----CCc
Q 043038           29 SNLVYLGLSDN-SFLGSISHFLCDKINETKRLEALKLNDNYLQGE----LPDCWMSDQNLKILKLSNNKFIGN----LPN   99 (271)
Q Consensus        29 ~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~   99 (271)
                      +.|++|++++| .++......+...+...+.|++|++++|.++..    +...+...++|++|++++|.++..    +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            57888888888 777655556666666778888888888887632    233445567788888888887732    234


Q ss_pred             ccccCCCccEEEc--cCCccccccCccccCCCCccEEecCCCCcccEEEeccCccC
Q 043038          100 SFGSLAFLVWLDL--GKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFH  153 (271)
Q Consensus       100 ~~~~l~~L~~l~l--~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~  153 (271)
                      .+...+.|+.|++  ++|.+.+.....+...  +     ...++|++|++++|.+.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~--L-----~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANM--L-----EKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHH--H-----HHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHH--H-----HhCCCcCEEeccCCCCC
Confidence            4556677888888  7788764322222110  0     12334566668888775

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.69  E-value=1.1e-07  Score=81.38  Aligned_cols=39  Identities=5%  Similarity=-0.147  Sum_probs=28.6

Q ss_pred             HHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCC
Q 043038          229 YNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN  268 (271)
Q Consensus       229 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  268 (271)
                      .+.+|.+|+.+++..+ +.......|.+|++|+.+++..+
T Consensus       338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            3457788888888765 55555667888999998887654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.55  E-value=2.8e-08  Score=75.97  Aligned_cols=121  Identities=13%  Similarity=0.118  Sum_probs=88.1

Q ss_pred             chhhhhhccCCCcccEEEccCc-ccCCC----CCccccCCCCCCEEEccCCccccc----CCcccccCCCccEEEccCCc
Q 043038           46 SHFLCDKINETKRLEALKLNDN-YLQGE----LPDCWMSDQNLKILKLSNNKFIGN----LPNSFGSLAFLVWLDLGKNR  116 (271)
Q Consensus        46 ~~~~~~~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~  116 (271)
                      .+.+...+...+.|++|++++| .+...    +...+...++|++|++++|.++..    +...+...+.|+.|++++|.
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            3445566667899999999999 88632    345566778999999999998742    23345556889999999999


Q ss_pred             ccccc----CccccCCCCccEEecCCCCcccEEEe--ccCccCCC----CchhhhcCccccEEeccCCccc
Q 043038          117 LFGTI----PATLKNCTALESLDVERFSRMVVLNL--RSNKFHGP----LPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       117 l~~~~----~~~~~~l~~L~~L~l~~~~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                      +.+..    ...+..           .++|++|++  ++|.++..    +...+...+.|+.|++++|.+.
T Consensus       105 i~~~g~~~l~~~L~~-----------n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          105 ISGSGILALVEALQS-----------NTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CCHHHHHHHHHGGGG-----------CSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCHHHHHHHHHHHHh-----------CCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            87542    223333           345667779  88998743    3455667789999999999986

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.53  E-value=1.4e-06  Score=74.40  Aligned_cols=38  Identities=11%  Similarity=0.027  Sum_probs=22.9

Q ss_pred             HHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCC
Q 043038          230 NEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN  268 (271)
Q Consensus       230 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  268 (271)
                      +.+|.+|+.+.+-.+ +.......|.+|.+|+.+++.++
T Consensus       330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            345666666666533 44444556677777777776654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.41  E-value=1.8e-07  Score=75.39  Aligned_cols=39  Identities=28%  Similarity=0.285  Sum_probs=19.0

Q ss_pred             CCCCCEEEccCCcccc--cCCcccccCCCccEEEccCCccc
Q 043038           80 DQNLKILKLSNNKFIG--NLPNSFGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        80 l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~l~l~~n~l~  118 (271)
                      ++.|+.|++++|++++  .++..+..+++|+.|++++|.+.
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence            4455555555555543  12233344555555555555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.35  E-value=2e-06  Score=73.50  Aligned_cols=133  Identities=11%  Similarity=0.034  Sum_probs=69.6

Q ss_pred             ccccCCCccEEEccCCccccccCccccCCCCccEEec----------CCCCcccEEEeccCccCCCCchhhhcCccccEE
Q 043038          100 SFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV----------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL  169 (271)
Q Consensus       100 ~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l----------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  169 (271)
                      .|.....++.+.+..+... .....+..+..++....          ..+.+|+.+.+..+ ++.....+|..+.+|+.+
T Consensus       248 ~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          248 VFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             TTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             cccccccceeEEcCCCcce-eeccccccccccceeccCceeeccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence            3444455555555444322 22233344444443332          34456666666543 332334456667777777


Q ss_pred             eccCCccceecCcccccccCCcc---ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcc
Q 043038          170 DIADNNLSGAIPNYINNVTGMVT---TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDL  246 (271)
Q Consensus       170 ~l~~n~l~~~~~~~~~~~~~L~~---~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  246 (271)
                      ++.++ ++.....+|.+|.+|+.   ...+..++                          ..++.+|++|+.+++..+ +
T Consensus       326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~l~~I~--------------------------~~aF~~C~~L~~i~lp~~-~  377 (394)
T 4fs7_A          326 DLPYL-VEEIGKRSFRGCTSLSNINFPLSLRKIG--------------------------ANAFQGCINLKKVELPKR-L  377 (394)
T ss_dssp             CCCTT-CCEECTTTTTTCTTCCEECCCTTCCEEC--------------------------TTTBTTCTTCCEEEEEGG-G
T ss_pred             EeCCc-ccEEhHHhccCCCCCCEEEECccccEeh--------------------------HHHhhCCCCCCEEEECCC-C
Confidence            77543 44233456666666655   11122111                          122357888888888654 3


Q ss_pred             cccccHhhhccCCCCEE
Q 043038          247 LKNVPLEVRNLKATQSL  263 (271)
Q Consensus       247 ~~~~~~~l~~l~~L~~L  263 (271)
                      . .+...|.+|++|+.+
T Consensus       378 ~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          378 E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             G-GGGGGBCTTCEEEEE
T ss_pred             E-EhhheecCCCCCcEE
Confidence            2 345678888888765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.24  E-value=3.8e-07  Score=73.44  Aligned_cols=99  Identities=24%  Similarity=0.204  Sum_probs=67.2

Q ss_pred             EEccCCccccccchhhhhhccCCCcccEEEccCcccCC--CCCccccCCCCCCEEEccCCcccccCCcccccCC--CccE
Q 043038           34 LGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG--ELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLA--FLVW  109 (271)
Q Consensus        34 L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~  109 (271)
                      ++++.|.... ++..+.....+++.|++|++++|.+++  .++..+..+++|+.|++++|++.+.  ..+..+.  +|+.
T Consensus       148 l~l~~N~~~~-~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~  224 (267)
T 3rw6_A          148 IDVVLNRRSC-MAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEE  224 (267)
T ss_dssp             CCCCTTSHHH-HHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSE
T ss_pred             ccccCCHHHH-HHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcce
Confidence            5566664432 333222222358899999999999985  3446667889999999999999843  2344444  8999


Q ss_pred             EEccCCccccccCc-------cccCCCCccEEe
Q 043038          110 LDLGKNRLFGTIPA-------TLKNCTALESLD  135 (271)
Q Consensus       110 l~l~~n~l~~~~~~-------~~~~l~~L~~L~  135 (271)
                      |++.+|.+.+.+|.       .+..+++|+.||
T Consensus       225 L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          225 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             EECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            99999998865542       345567776665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.20  E-value=4.3e-07  Score=68.22  Aligned_cols=13  Identities=8%  Similarity=0.084  Sum_probs=7.3

Q ss_pred             CccEEEccCCccc
Q 043038          106 FLVWLDLGKNRLF  118 (271)
Q Consensus       106 ~L~~l~l~~n~l~  118 (271)
                      .|+.+++++|.++
T Consensus        62 ~L~~LDLs~~~It   74 (176)
T 3e4g_A           62 KIQAIDATDSCIM   74 (176)
T ss_dssp             CEEEEEEESCCCC
T ss_pred             eEeEEeCcCCCcc
Confidence            4556666655544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.16  E-value=7.3e-07  Score=66.94  Aligned_cols=34  Identities=9%  Similarity=0.154  Sum_probs=14.4

Q ss_pred             CCCEEEccCCcccccCCcccccCCCccEEEccCC
Q 043038           82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKN  115 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n  115 (271)
                      .|++||+++|.++...-..+..+++|+.|++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            3444444444443222222334444444444444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.08  E-value=4.5e-05  Score=65.09  Aligned_cols=39  Identities=0%  Similarity=-0.119  Sum_probs=29.6

Q ss_pred             HHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCC
Q 043038          229 YNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHN  268 (271)
Q Consensus       229 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  268 (271)
                      .+.+|.+|+.+++..+ +.......|.+|.+|+.+.+..+
T Consensus       306 aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s  344 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS  344 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT
T ss_pred             eecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc
Confidence            3457888999988754 54445678999999999998654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.76  E-value=0.00059  Score=57.64  Aligned_cols=13  Identities=0%  Similarity=-0.003  Sum_probs=6.4

Q ss_pred             ccCCCcccEEECc
Q 043038            4 LTKFTQLLFRSLD   16 (271)
Q Consensus         4 ~~~~~~L~~L~l~   16 (271)
                      |.++.+|+.+++.
T Consensus        65 F~~C~~L~~I~lp   77 (379)
T 4h09_A           65 FNSCYNMTKVTVA   77 (379)
T ss_dssp             TTTCTTCCEEEEC
T ss_pred             hhCCCCCCEEEeC
Confidence            4444555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.67  E-value=1.3e-05  Score=61.24  Aligned_cols=87  Identities=14%  Similarity=0.161  Sum_probs=60.5

Q ss_pred             CCccEEEccCC-ccccccchhhhhhccCCCcccEEEccCcccCCC----CCccccCCCCCCEEEccCCcccccC----Cc
Q 043038           29 SNLVYLGLSDN-SFLGSISHFLCDKINETKRLEALKLNDNYLQGE----LPDCWMSDQNLKILKLSNNKFIGNL----PN   99 (271)
Q Consensus        29 ~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~   99 (271)
                      +.|+.|++++| .+....-..++..+...+.|++|+|++|.+...    +..++..-+.|++|++++|.|+...    ..
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            47888888875 776655566777777778888888888888733    3334445678888888888887332    22


Q ss_pred             ccccCCCccEEEccCC
Q 043038          100 SFGSLAFLVWLDLGKN  115 (271)
Q Consensus       100 ~~~~l~~L~~l~l~~n  115 (271)
                      .+..-+.|+.|+++++
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            3444456888888765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.63  E-value=0.0014  Score=55.29  Aligned_cols=36  Identities=11%  Similarity=0.021  Sum_probs=19.8

Q ss_pred             HHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEcc
Q 043038          230 NEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFS  266 (271)
Q Consensus       230 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  266 (271)
                      +.+|.+|+.+.+..+ +.......|.+|.+|+.+.+.
T Consensus       306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            345566666666533 333334556666666666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.58  E-value=4.3e-05  Score=58.41  Aligned_cols=123  Identities=12%  Similarity=0.101  Sum_probs=82.9

Q ss_pred             hhhhhhccCCCcccEEEccCc-ccCCC----CCccccCCCCCCEEEccCCcccccC----CcccccCCCccEEEccCCcc
Q 043038           47 HFLCDKINETKRLEALKLNDN-YLQGE----LPDCWMSDQNLKILKLSNNKFIGNL----PNSFGSLAFLVWLDLGKNRL  117 (271)
Q Consensus        47 ~~~~~~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~----~~~~~~l~~L~~l~l~~n~l  117 (271)
                      ..+...+.+-+.|++|++++| .|...    +..++..-+.|+.|++++|.++...    ...+..-+.|+.|+++.|.+
T Consensus        31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            445555566789999999986 77632    3455666789999999999997432    23344557899999999999


Q ss_pred             ccccCccccC-CCCccEEecCCCCcccEEEeccC---ccCC----CCchhhhcCccccEEeccCCccc
Q 043038          118 FGTIPATLKN-CTALESLDVERFSRMVVLNLRSN---KFHG----PLPTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       118 ~~~~~~~~~~-l~~L~~L~l~~~~~L~~L~l~~n---~l~~----~~~~~~~~l~~L~~L~l~~n~l~  177 (271)
                      .+.....+.. ++        ..+.|+.|++++|   .+..    .+...+...+.|..|+++.|.+.
T Consensus       111 g~~Ga~ala~aL~--------~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          111 TPELLARLLRSTL--------VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             CHHHHHHHHHHTT--------TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             CHHHHHHHHHHHh--------hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            7543332221 11        2334667778754   4432    24456777889999999987654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.85  E-value=0.0028  Score=44.94  Aligned_cols=36  Identities=22%  Similarity=0.210  Sum_probs=19.8

Q ss_pred             cccEEEccCcccCCCCCccccCCCCCCEEEccCCcc
Q 043038           58 RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKF   93 (271)
Q Consensus        58 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   93 (271)
                      .++.|+|++|.|+...+..|..+++|+.|++++|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            455555555555533344455555666666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.66  E-value=0.0027  Score=45.02  Aligned_cols=36  Identities=25%  Similarity=0.269  Sum_probs=18.6

Q ss_pred             CCCEEEccCCcccccCCcccccCCCccEEEccCCcc
Q 043038           82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL  117 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l  117 (271)
                      +++.|++++|+++...++.|..+++|+.+++.+|.+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            455555555555533334444555555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	271
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 23/153 (15%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKR- 58
           +  L   T L    L +N +S L PL   + L  L L  N             +   +  
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293

Query: 59  ---------------LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGS 103
                          L  L L  N +    P   ++   L+ L  +NNK      +S  +
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT--KLQRLFFANNKVSD--VSSLAN 349

Query: 104 LAFLVWLDLGKNRLFGTIPATLKNCTALESLDV 136
           L  + WL  G N++    P  L N T +  L +
Sbjct: 350 LTNINWLSAGHNQISDLTP--LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 1e-07
 Identities = 36/182 (19%), Positives = 62/182 (34%), Gaps = 26/182 (14%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRL 59
           +  L   T L   SL+ N +  +  L S +NL  L L++N             ++   +L
Sbjct: 212 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP------LSGLTKL 265

Query: 60  EALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFG 119
             LKL  N +    P   ++           N+      +   +L  L +L L  N +  
Sbjct: 266 TELKLGANQISNISPLAGLTALTNL----ELNENQLEDISPISNLKNLTYLTLYFNNISD 321

Query: 120 TIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGA 179
             P  + + T L+ L              +NK      +   +L  +  L    N +S  
Sbjct: 322 ISP--VSSLTKLQRLF-----------FANNKVSDV--SSLANLTNINWLSAGHNQISDL 366

Query: 180 IP 181
            P
Sbjct: 367 TP 368

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.1 bits (118), Expect = 8e-08
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 76  CWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLD 135
                +NL  L L NN+  G LP     L FL  L++  N L G IP    N    +   
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSA 297

Query: 136 VE 137
             
Sbjct: 298 YA 299

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.7 bits (109), Expect = 1e-06
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 64  LNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA 123
           L +N + G LP      + L  L +S N   G +P   G+L          N+     P 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP- 308

Query: 124 TLKNCT 129
            L  CT
Sbjct: 309 -LPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 50  CDKINETKRLEALKLNDNYLQG--ELPDCWMSDQNLKILKLSNN-KFIGNLPNSFGSLAF 106
           CD   +T R+  L L+   L     +P    +   L  L +      +G +P +   L  
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ 102

Query: 107 LVWLDLGKNRLFGTIPATLKNCTALESLD-------------VERFSRMVVLNLRSNKFH 153
           L +L +    + G IP  L     L +LD             +     +V +    N+  
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162

Query: 154 GPLPTRFCDLAILQI-LDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDV 212
           G +P  +   + L   + I+ N L+G IP    N+       S +        +      
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 213 ILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
                 +  S    +    +   +    +  N +   +P  +  LK   SLN S N   
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.0 bits (97), Expect = 3e-05
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 139 FSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPN 182
              +  L+LR+N+ +G LP     L  L  L+++ NNL G IP 
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 36  LSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIG 95
           L +N   G++   L       K L +L ++ N L GE+P    + Q   +   +NNK + 
Sbjct: 251 LRNNRIYGTLPQGLTQ----LKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLC 305

Query: 96  NLP 98
             P
Sbjct: 306 GSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 9e-07
 Identities = 43/225 (19%), Positives = 72/225 (32%), Gaps = 14/225 (6%)

Query: 59  LEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF 118
              L L +N +       + + +NL  L L NNK     P +F  L  L  L L KN+L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 119 GTIPATLKNCTAL------------ESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAIL 166
                  K    L               +      +V L     K  G     F  +  L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 167 QILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEV 226
             + IAD N++        ++T +    +            L+    L    + +S  + 
Sbjct: 153 SYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN 212

Query: 227 VEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTFT 271
                  +L    +   N+ L  VP  + + K  Q +   +N  +
Sbjct: 213 GSLANTPHL--RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 255

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 17/191 (8%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALK 63
                +L    L  N +  L   +   L  L + +N  +  +   + + +N+   +E L 
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVE-LG 132

Query: 64  LNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA 123
            N     G     +   + L  +++++            SL     L L  N++     A
Sbjct: 133 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAA 189

Query: 124 TLKNCTALESLDVERFSRMVVLNLR------------SNKFHGPLPTRFCDLAILQILDI 171
           +LK    L  L +   S   V N              +N     +P    D   +Q++ +
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 249

Query: 172 ADNNLSGAIPN 182
            +NN+S    N
Sbjct: 250 HNNNISAIGSN 260

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 12/170 (7%)

Query: 4   LTKFTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALK 63
                +L +  +   N++ +   +  +L  L L  N      +  L    N    L  L 
Sbjct: 146 FQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN----LAKLG 201

Query: 64  LNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA 123
           L+ N +         +  +L+ L L+NNK +  +P       ++  + L  N +      
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSN 260

Query: 124 TLKNCTALESLDVERFSRMVVLNLRSNK--FHGPLPTRFCDLAILQILDI 171
                           +    ++L SN   +    P+ F  + +   + +
Sbjct: 261 DFCPPGYNTKK-----ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.8 bits (104), Expect = 2e-06
 Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 18/181 (9%)

Query: 14  SLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGEL 73
                 +  +   I  +   L L+DN      S  L  ++     L  L+L  N L G  
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRL---PHLVKLELKRNQLTGIE 70

Query: 74  PDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALES 133
           P+ +    +++ L+L  NK        F  L  L  L+L  N++   +P + ++  +L S
Sbjct: 71  PNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130

Query: 134 LDVERF------------SRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIP 181
           L++                 +   +L         P++  D   +QI D+  +    +  
Sbjct: 131 LNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSEFKCSSE 187

Query: 182 N 182
           N
Sbjct: 188 N 188

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 4e-06
 Identities = 34/170 (20%), Positives = 53/170 (31%), Gaps = 18/170 (10%)

Query: 30  NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS 89
            L  L L                      L+ L L DN LQ    D +    NL  L L 
Sbjct: 106 RLHTLHLDRCGL----QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161

Query: 90  NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKN-------------CTALESLDV 136
            N+       +F  L  L  L L +NR+    P   ++              +AL +  +
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221

Query: 137 ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINN 186
                +  L L  N +      R    A LQ    + + +  ++P  +  
Sbjct: 222 APLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQRLAG 270

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 7e-04
 Identities = 34/181 (18%), Positives = 51/181 (28%), Gaps = 22/181 (12%)

Query: 1   MPNLTKFTQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETK 57
                    L +  L  N +  L         NL +L L  N                  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG----LH 177

Query: 58  RLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRL 117
            L+ L L+ N +    P  +     L  L L  N        +   L  L +L L  N  
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

Query: 118 FGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLS 177
                A               ++ +      S++    LP R   LA   +  +A N+L 
Sbjct: 238 VCDCRA------------RPLWAWLQKFRGSSSEVPCSLPQR---LAGRDLKRLAANDLQ 282

Query: 178 G 178
           G
Sbjct: 283 G 283

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 5e-04
 Identities = 24/120 (20%), Positives = 39/120 (32%), Gaps = 16/120 (13%)

Query: 84  KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMV 143
           ++L L++      +      L  +  LDL  NRL    PA L     LE L     +   
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 144 V-----------LNLRSNKF-HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMV 191
           V           L L +N+               L +L++  N+L          +  M+
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEML 116

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 64  LNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPA 123
              N    E+        +L+ L +SNNK +  LP        L  L    N L   +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPR---LERLIASFNHL-AEVPE 321

Query: 124 TLKNCTALESLDVER 138
             +N   L+ L VE 
Sbjct: 322 LPQN---LKQLHVEY 333

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.003
 Identities = 10/87 (11%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 59  LEALKLNDNYLQGE-LPDCWMSDQNLKILKLSNNKF----IGNLPNSFGSLAFLVWLDLG 113
           +++L +    L      +     Q  ++++L +         ++ ++      L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 114 KNRLFGTIPATL-----KNCTALESLD 135
            N L       +          ++ L 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLS 90

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (80), Expect = 0.004
 Identities = 16/75 (21%), Positives = 27/75 (36%)

Query: 62  LKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTI 121
           L LN N +Q      +   Q  ++    NN       + F   +  V LD+ + R+    
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 122 PATLKNCTALESLDV 136
              L+N   L +   
Sbjct: 218 SYGLENLKKLRARST 232

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	271
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.81
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.64
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.56
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.38
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.3
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.03
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.02
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.92
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.41
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.4

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=2.8e-25  Score=183.59  Aligned_cols=230  Identities=22%  Similarity=0.294  Sum_probs=177.6

Q ss_pred             CcccEEECcCCCCCCC--cccc---CCCccEEEccC-CccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCC
Q 043038            8 TQLLFRSLDSNNMSGL--LPLI---SSNLVYLGLSD-NSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQ   81 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~--~~~~---~~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~   81 (271)
                      .+++.|+++++.+.+.  +|..   +++|++|++++ |.+++.+|..+..    +++|++|++++|++.+..+..+..+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~----L~~L~~L~Ls~N~l~~~~~~~~~~~~  125 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK----LTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG----CTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc----ccccchhhhccccccccccccccchh
Confidence            3688899999988874  5555   57999999986 7888778776665    89999999999999877788888899


Q ss_pred             CCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCc-cEEecCC------------CCcccEEEec
Q 043038           82 NLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTAL-ESLDVER------------FSRMVVLNLR  148 (271)
Q Consensus        82 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L-~~L~l~~------------~~~L~~L~l~  148 (271)
                      .|+.+++++|.+...+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++..            ......++++
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~  205 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS  205 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC
T ss_pred             hhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999887888889999999999999999988888888877765 5555411            1134567777


Q ss_pred             cCccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceecccc
Q 043038          149 SNKFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSRE  224 (271)
Q Consensus       149 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (271)
                      .+...+..|..+..++.++.+++++|.+.+.++ .+..++.++.    .|.+.+.                         
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~-------------------------  259 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGT-------------------------  259 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEEC-------------------------
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccCccCeeccc-------------------------
Confidence            887777778888888888888888888875443 4555555544    4444432                         


Q ss_pred             chhhHHHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCC
Q 043038          225 EVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNT  269 (271)
Q Consensus       225 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  269 (271)
                       +|..++.+++|++|+|++|++.|.+|. +..+++|+.+++++|+
T Consensus       260 -iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         260 -LPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             -CCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             -CChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence             223334678888999999999888884 5788889999998886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=4.7e-25  Score=182.20  Aligned_cols=221  Identities=22%  Similarity=0.292  Sum_probs=161.3

Q ss_pred             CccEEEccCCccccc--cchhhhhhccCCCcccEEEccC-cccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCC
Q 043038           30 NLVYLGLSDNSFLGS--ISHFLCDKINETKRLEALKLND-NYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAF  106 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~--~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  106 (271)
                      +++.|+++++.+.+.  +|..+.    +++.|++|++++ |.+++.+|..|.++++|++|++++|++.+..+..+..+..
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~----~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA----NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG----GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEECCCCCCCCCCCCChHHh----cCccccccccccccccccccccccccccccchhhhccccccccccccccchhh
Confidence            699999999998863  455554    499999999997 7898899999999999999999999999888888999999


Q ss_pred             ccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccc-cEEeccCCccceecCcccc
Q 043038          107 LVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAIL-QILDIADNNLSGAIPNYIN  185 (271)
Q Consensus       107 L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~  185 (271)
                      |+.+++++|.+.+.+|..+..++.++.++           +++|.+++.+|..+..+..+ +.+++++|++++..|..+.
T Consensus       127 L~~l~l~~N~~~~~~p~~l~~l~~L~~l~-----------l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~  195 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLPPSISSLPNLVGIT-----------FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA  195 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEE-----------CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred             hcccccccccccccCchhhccCcccceee-----------cccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999888888888777666554           67777766667666666554 6677777777766666665


Q ss_pred             cccCCcc---ccccccccccccccccchhhhhhhhce---eccccchhhHHHHHhhHhhhhhcCCcccccccHhhhccCC
Q 043038          186 NVTGMVT---TNSFSRSAQQHLHVPLDVDVILMEKAS---VVSREEVVEYNEILNLVMVTIVSRNDLLKNVPLEVRNLKA  259 (271)
Q Consensus       186 ~~~~L~~---~n~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~  259 (271)
                      .+.....   .+...+.    ++.... ....+..+.   ......++ ..+.+++++.|++++|++.+.+|++|..+++
T Consensus       196 ~l~~~~l~l~~~~~~~~----~~~~~~-~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~  269 (313)
T d1ogqa_         196 NLNLAFVDLSRNMLEGD----ASVLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF  269 (313)
T ss_dssp             GCCCSEEECCSSEEEEC----CGGGCC-TTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTT
T ss_pred             ccccccccccccccccc----cccccc-cccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCC
Confidence            5544332   2222221    111110 000011111   11111222 2345788999999999999899999999999


Q ss_pred             CCEEEccCCCCC
Q 043038          260 TQSLNFSHNTFT  271 (271)
Q Consensus       260 L~~L~l~~n~i~  271 (271)
                      |++|++++|+|+
T Consensus       270 L~~L~Ls~N~l~  281 (313)
T d1ogqa_         270 LHSLNVSFNNLC  281 (313)
T ss_dssp             CCEEECCSSEEE
T ss_pred             CCEEECcCCccc
Confidence            999999999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.3e-22  Score=161.22  Aligned_cols=200  Identities=24%  Similarity=0.221  Sum_probs=156.0

Q ss_pred             cCCCcccEEECcCCCCCCCccccC-CCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038            5 TKFTQLLFRSLDSNNMSGLLPLIS-SNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL   83 (271)
Q Consensus         5 ~~~~~L~~L~l~~n~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L   83 (271)
                      .+...+.++|.+++.++. +|..+ +++++|++++|.++...+..    |.++++|++|++++|.++ .++ .++.+++|
T Consensus         7 ~~~~~~~~v~C~~~~L~~-iP~~lp~~l~~L~Ls~N~i~~l~~~~----f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L   79 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENLLYTFSLAT----LMPYTRLTQLNLDRAELT-KLQ-VDGTLPVL   79 (266)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCCCTTCCEEECTTSCCSEEEGGG----GTTCTTCCEEECTTSCCC-EEE-CCSCCTTC
T ss_pred             cccCCCeEEEccCCCCCe-eCcCcCcCCCEEECcCCcCCCcCHHH----hhcccccccccccccccc-ccc-cccccccc
Confidence            455666778999999986 45554 58999999999998633333    445999999999999998 554 35789999


Q ss_pred             CEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcC
Q 043038           84 KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDL  163 (271)
Q Consensus        84 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l  163 (271)
                      ++|++++|+++ ..+..+..+++|+.+++++|.+.+..+..+..+.           +++.|++++|.++...+..+..+
T Consensus        80 ~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-----------~l~~L~l~~n~l~~l~~~~~~~l  147 (266)
T d1p9ag_          80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG-----------ELQELYLKGNELKTLPPGLLTPT  147 (266)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT-----------TCCEEECTTSCCCCCCTTTTTTC
T ss_pred             ccccccccccc-ccccccccccccccccccccccceeecccccccc-----------ccccccccccccceecccccccc
Confidence            99999999998 5667788999999999999998744444444444           45566689999986667777888


Q ss_pred             ccccEEeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcC
Q 043038          164 AILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSR  243 (271)
Q Consensus       164 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~  243 (271)
                      +.++.+++++|++++..+..+.                                              .+++|++|+|++
T Consensus       148 ~~l~~l~l~~N~l~~~~~~~~~----------------------------------------------~l~~L~~L~Ls~  181 (266)
T d1p9ag_         148 PKLEKLSLANNNLTELPAGLLN----------------------------------------------GLENLDTLLLQE  181 (266)
T ss_dssp             TTCCEEECTTSCCSCCCTTTTT----------------------------------------------TCTTCCEEECCS
T ss_pred             ccchhcccccccccccCccccc----------------------------------------------cccccceeeccc
Confidence            9999999999999854444333                                              345567789999


Q ss_pred             CcccccccHhhhccCCCCEEEccCCCC
Q 043038          244 NDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       244 n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      |++. .+|+++..+++|+.|++++|.+
T Consensus       182 N~L~-~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         182 NSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             SCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCCc-ccChhHCCCCCCCEEEecCCCC
Confidence            9986 5888888899999999998865

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=7.6e-22  Score=162.10  Aligned_cols=225  Identities=15%  Similarity=0.188  Sum_probs=142.1

Q ss_pred             cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038            9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL   88 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   88 (271)
                      ..+.+|.++..++..++...+++++|++++|.++...+..    |.++++|++|++++|.+....|..|.+++.|+.|++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~----f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGD----FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTT----TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhH----hhccccccccccccccccccchhhhhCCCccCEecc
Confidence            5677888888887554433468999999999987632223    345889999999999988666788899999999999


Q ss_pred             cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec---------------CCCCcccEEEeccCccC
Q 043038           89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV---------------ERFSRMVVLNLRSNKFH  153 (271)
Q Consensus        89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l---------------~~~~~L~~L~l~~n~l~  153 (271)
                      ++|+++ .+|..+  ...+..++...|.+.+..+..+........++.               ..+++|+.+++++|.++
T Consensus        87 ~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          87 SKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             CSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             cCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            999988 455443  356778888888777433333333443444433               33456677777777765


Q ss_pred             CCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhH
Q 043038          154 GPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEY  229 (271)
Q Consensus       154 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (271)
                       .+|..+  .++++.+++++|...+..+..+..++.++.    .|.+.+...                          .+
T Consensus       164 -~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~--------------------------~~  214 (305)
T d1xkua_         164 -TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--------------------------GS  214 (305)
T ss_dssp             -SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT--------------------------TT
T ss_pred             -ccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccc--------------------------cc
Confidence             333322  456777777777766666666665555544    333333211                          11


Q ss_pred             HHHHhhHhhhhhcCCcccccccHhhhccCCCCEEEccCCCC
Q 043038          230 NEILNLVMVTIVSRNDLLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       230 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      +..+++|++|+|++|.+. .+|.+|..+++|++|++++|+|
T Consensus       215 ~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         215 LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred             ccccccceeeeccccccc-ccccccccccCCCEEECCCCcc
Confidence            124555566666666554 2455555666666666666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.7e-22  Score=160.50  Aligned_cols=217  Identities=19%  Similarity=0.165  Sum_probs=164.6

Q ss_pred             EEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc-
Q 043038           12 FRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS-   89 (271)
Q Consensus        12 ~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-   89 (271)
                      .++.+++.+.. +|.. .+++++|++++|.++...+..    |.+++.|+.|++++|.+....+..+.....++.++.. 
T Consensus        15 ~v~c~~~~L~~-iP~~ip~~~~~L~Ls~N~i~~i~~~~----f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          15 TTSCPQQGLQA-VPVGIPAASQRIFLHGNRISHVPAAS----FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             EEECCSSCCSS-CCTTCCTTCSEEECTTSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEEcCCCCCCc-cCCCCCCCCCEEECcCCcCCCCCHHH----hhcccccccccccccccccccccccccccccccccccc
Confidence            45777777764 4444 458899999999987633333    4458899999999999987777778888888888775 


Q ss_pred             CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEE
Q 043038           90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQIL  169 (271)
Q Consensus        90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  169 (271)
                      .+.++...+..|..+++|+.+++++|.+....+..+...+           +|+.+++++|.+++..+..|..++.|+.|
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-----------~L~~l~l~~N~l~~i~~~~f~~~~~L~~L  158 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-----------ALQYLYLQDNALQALPDDTFRDLGNLTHL  158 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-----------TCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhc-----------ccchhhhccccccccChhHhccccchhhc
Confidence            5567655677788899999999999987643343444344           45566688899986666778888889999


Q ss_pred             eccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCc
Q 043038          170 DIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRND  245 (271)
Q Consensus       170 ~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~  245 (271)
                      ++++|.+++..+..+..++.|+.    .|.+.+..                          +..+..+++|++|++++|.
T Consensus       159 ~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~--------------------------~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH--------------------------PHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------------------------TTTTTTCTTCCEEECCSSC
T ss_pred             ccccCcccccchhhhccccccchhhhhhccccccC--------------------------hhHhhhhhhcccccccccc
Confidence            99999988666777777777776    45555432                          1222467889999999999


Q ss_pred             ccccccHhhhccCCCCEEEccCCCC
Q 043038          246 LLKNVPLEVRNLKATQSLNFSHNTF  270 (271)
Q Consensus       246 l~~~~~~~l~~l~~L~~L~l~~n~i  270 (271)
                      +.+..+..|..+++|+.|++++|.+
T Consensus       213 i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         213 LSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccccccccccccccCEEEecCCCC
Confidence            9988888999999999999999975

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=1.8e-19  Score=147.73  Aligned_cols=230  Identities=18%  Similarity=0.178  Sum_probs=173.0

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      +.+++|++++|.+....+..   +++|++|++++|.+....|..+    .+++.|+.|++++|+++ .+|..+  ...++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f----~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~  103 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF----APLVKLERLYLSKNQLK-ELPEKM--PKTLQ  103 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT----TTCTTCCEEECCSSCCS-BCCSSC--CTTCC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhh----hCCCccCEecccCCccC-cCccch--hhhhh
Confidence            67999999999998766544   4689999999999987445444    45999999999999998 566543  46789


Q ss_pred             EEEccCCcccccCCcccccCCCccEEEccCCccc--cccCccccCCCCccEEec----------CCCCcccEEEeccCcc
Q 043038           85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF--GTIPATLKNCTALESLDV----------ERFSRMVVLNLRSNKF  152 (271)
Q Consensus        85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~--~~~~~~~~~l~~L~~L~l----------~~~~~L~~L~l~~n~l  152 (271)
                      .|+...|.+....+..+........+....+...  +..+..+..+++++.+++          ..+++|+.|++++|..
T Consensus       104 ~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~  183 (305)
T d1xkua_         104 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKI  183 (305)
T ss_dssp             EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCC
T ss_pred             hhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcC
Confidence            9999999988555555666677777887776543  233445666777777776          3356789999999998


Q ss_pred             CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhh
Q 043038          153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVE  228 (271)
Q Consensus       153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (271)
                      ++..+..+..++.++.|++++|.+.+..+..+..++.|+.    .|.+..+     |                      .
T Consensus       184 ~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-----p----------------------~  236 (305)
T d1xkua_         184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-----P----------------------G  236 (305)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-----C----------------------T
T ss_pred             CCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-----c----------------------c
Confidence            8777888888999999999999998777788888888776    4445442     1                      1


Q ss_pred             HHHHHhhHhhhhhcCCcccccccHh------hhccCCCCEEEccCCCCC
Q 043038          229 YNEILNLVMVTIVSRNDLLKNVPLE------VRNLKATQSLNFSHNTFT  271 (271)
Q Consensus       229 ~~~~~~~L~~L~L~~n~l~~~~~~~------l~~l~~L~~L~l~~n~i~  271 (271)
                      .+..+++|+.|++++|++.......      +..+++|+.|++++|.++
T Consensus       237 ~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         237 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            1236788999999999987532222      356788999999999763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.2e-19  Score=147.37  Aligned_cols=181  Identities=23%  Similarity=0.193  Sum_probs=119.5

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEcc-CcccCCCCCccccCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLN-DNYLQGELPDCWMSDQNL   83 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L   83 (271)
                      +.+++|++++|.++...+..   +++|++|++++|.+....+..+.    ....+..+... .+.++...+..|.++++|
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~----~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT----GLALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT----TCTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccc----ccccccccccccccccccccchhhcccccC
Confidence            46899999999998665554   45899999999998764443333    35667776654 445664556677777888


Q ss_pred             CEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-------------CCCCcccEEEeccC
Q 043038           84 KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-------------ERFSRMVVLNLRSN  150 (271)
Q Consensus        84 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~~~~L~~L~l~~n  150 (271)
                      ++|++++|.+....+..+...++|+.+++++|.+++..+..+..+++++.|++             ..+++|+.+++++|
T Consensus       108 ~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         108 HTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN  187 (284)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhc
Confidence            88888888776555556666777888888888777443445555666665554             23445556666666


Q ss_pred             ccCCCCchhhhcCccccEEeccCCccceecCcccccccCCcc
Q 043038          151 KFHGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT  192 (271)
Q Consensus       151 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  192 (271)
                      .+++..|..|..+++|+.|++++|++.+..+..+..++.|+.
T Consensus       188 ~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             cccccChhHhhhhhhcccccccccccccccccccccccccCE
Confidence            666555666666666666666666666544455555555544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=1.4e-18  Score=146.37  Aligned_cols=161  Identities=20%  Similarity=0.244  Sum_probs=102.8

Q ss_pred             CCCcccEEECcCCCCCCCc-cccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            6 KFTQLLFRSLDSNNMSGLL-PLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      ++.+|++|+++++.+...- -..+++|++|++++|.+++ ++.     +.++++|++|++++|++.. ++ .+..+++|+
T Consensus        42 ~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~-l~~-----l~~L~~L~~L~L~~n~i~~-i~-~l~~l~~L~  113 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITP-----LKNLTKLVDILMNNNQIAD-IT-PLANLTNLT  113 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCC
T ss_pred             HhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCC-Ccc-----ccCCccccccccccccccc-cc-ccccccccc
Confidence            4556777777777776421 1235677777887777765 221     3447777777777777763 32 256777777


Q ss_pred             EEEccCCccccc---------------------------------------------------------------CCccc
Q 043038           85 ILKLSNNKFIGN---------------------------------------------------------------LPNSF  101 (271)
Q Consensus        85 ~L~l~~n~~~~~---------------------------------------------------------------~~~~~  101 (271)
                      .|+++++.+++.                                                               ....+
T Consensus       114 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (384)
T d2omza2         114 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL  193 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence            777776654311                                                               01123


Q ss_pred             ccCCCccEEEccCCccccccCccccCCCCccEEec-----------CCCCcccEEEeccCccCCCCchhhhcCccccEEe
Q 043038          102 GSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-----------ERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILD  170 (271)
Q Consensus       102 ~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-----------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  170 (271)
                      ..++++..+++++|.+.+..|  ...+++++.+++           ..+++|+.+++++|.+++. + .+..+++|+.++
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-~-~~~~~~~L~~L~  269 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-A-PLSGLTKLTELK  269 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEE
T ss_pred             ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCC-C-cccccccCCEee
Confidence            345677788888887774332  344566676665           3456788888888888743 2 366777888888


Q ss_pred             ccCCccce
Q 043038          171 IADNNLSG  178 (271)
Q Consensus       171 l~~n~l~~  178 (271)
                      ++++++++
T Consensus       270 l~~~~l~~  277 (384)
T d2omza2         270 LGANQISN  277 (384)
T ss_dssp             CCSSCCCC
T ss_pred             ccCcccCC
Confidence            88887763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=8.7e-19  Score=147.66  Aligned_cols=244  Identities=21%  Similarity=0.276  Sum_probs=145.7

Q ss_pred             CCCccCCCcccEEECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCC-------
Q 043038            1 MPNLTKFTQLLFRSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE-------   72 (271)
Q Consensus         1 ~~~~~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-------   72 (271)
                      ++.++.+++|++|++++|.+++..|-. +++|++|++++|.+.+. +.     +.++++|+.|+++++.+++.       
T Consensus        59 l~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i-~~-----l~~l~~L~~L~~~~~~~~~~~~~~~~~  132 (384)
T d2omza2          59 IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-TP-----LANLTNLTGLTLFNNQITDIDPLKNLT  132 (384)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GG-----GTTCTTCCEEECCSSCCCCCGGGTTCT
T ss_pred             ccccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccc-cc-----ccccccccccccccccccccccccccc
Confidence            356778899999999999998765422 67899999999998762 21     33477888888777665421       


Q ss_pred             --------------------------------------------------------CCccccCCCCCCEEEccCCccccc
Q 043038           73 --------------------------------------------------------LPDCWMSDQNLKILKLSNNKFIGN   96 (271)
Q Consensus        73 --------------------------------------------------------~~~~~~~l~~L~~L~l~~n~~~~~   96 (271)
                                                                              ....+..++.++.+++++|.+++.
T Consensus       133 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~  212 (384)
T d2omza2         133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDI  212 (384)
T ss_dssp             TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCC
Confidence                                                                    012234456777778888777743


Q ss_pred             CCcccccCCCccEEEccCCccccccCccccCCCCccEEec-----------CCCCcccEEEeccCccCCCCchhhhcCcc
Q 043038           97 LPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-----------ERFSRMVVLNLRSNKFHGPLPTRFCDLAI  165 (271)
Q Consensus        97 ~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-----------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  165 (271)
                      .+  +...++|+.+++++|.+++ + +.+..+++++.+++           ..+++|+.|+++++.+++. + .+..++.
T Consensus       213 ~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~-~-~~~~~~~  286 (384)
T d2omza2         213 TP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI-S-PLAGLTA  286 (384)
T ss_dssp             GG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC-G-GGTTCTT
T ss_pred             Cc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCC-C-ccccccc
Confidence            32  3445677777777777763 3 34566667777665           4456677777777777632 2 2445555


Q ss_pred             ccEEeccCCccceecCcccccccCCcc----ccccccccccccccccchhhhhhhhceec--cccchhhHHHHHhhHhhh
Q 043038          166 LQILDIADNNLSGAIPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVV--SREEVVEYNEILNLVMVT  239 (271)
Q Consensus       166 L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~L~~L  239 (271)
                      ++.+.+++|.+.+ + ..+..++.++.    .|.+.+...  +.     ....++.+.+.  ....++ .++.+++|++|
T Consensus       287 l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~~--l~-----~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L  356 (384)
T d2omza2         287 LTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDISP--VS-----SLTKLQRLFFANNKVSDVS-SLANLTNINWL  356 (384)
T ss_dssp             CSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCCGG--GG-----GCTTCCEEECCSSCCCCCG-GGGGCTTCCEE
T ss_pred             ccccccccccccc-c-cccchhcccCeEECCCCCCCCCcc--cc-----cCCCCCEEECCCCCCCCCh-hHcCCCCCCEE
Confidence            6666666666542 1 22333333333    333333210  00     01111111111  111122 23467888888


Q ss_pred             hhcCCcccccccHhhhccCCCCEEEccCC
Q 043038          240 IVSRNDLLKNVPLEVRNLKATQSLNFSHN  268 (271)
Q Consensus       240 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n  268 (271)
                      ++++|++.+..|  +.++++|+.|++++|
T Consensus       357 ~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         357 SAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            888888876433  778888888888877

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-18  Score=139.01  Aligned_cols=172  Identities=21%  Similarity=0.151  Sum_probs=138.6

Q ss_pred             CcccEEECcCCCCCCCcccc---CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            8 TQLLFRSLDSNNMSGLLPLI---SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         8 ~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      +.+++|++++|.+.+..+..   +++|++|++++|.++. ++.     +..+++|++|++++|+++ ..+..+..+++|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~-----~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~  103 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-----DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALT  103 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-----CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccc-----cccccccccccccccccc-ccccccccccccc
Confidence            47999999999998766554   4689999999999975 442     234899999999999998 6677889999999


Q ss_pred             EEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCc
Q 043038           85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLA  164 (271)
Q Consensus        85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  164 (271)
                      .|++++|.+....+..+..+.++..+++++|.+....+..+..+++           ++.+++++|++++..+..|..++
T Consensus       104 ~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~-----------l~~l~l~~N~l~~~~~~~~~~l~  172 (266)
T d1p9ag_         104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK-----------LEKLSLANNNLTELPAGLLNGLE  172 (266)
T ss_dssp             EEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-----------CCEEECTTSCCSCCCTTTTTTCT
T ss_pred             cccccccccceeeccccccccccccccccccccceecccccccccc-----------chhcccccccccccCcccccccc
Confidence            9999999998666777888999999999999998443344444444           55666899999877777788899


Q ss_pred             cccEEeccCCccceecCcccccccCCcc----cccccc
Q 043038          165 ILQILDIADNNLSGAIPNYINNVTGMVT----TNSFSR  198 (271)
Q Consensus       165 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~----~n~~~~  198 (271)
                      +|+.|++++|+++ .+|..+..++.|+.    .|.+..
T Consensus       173 ~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            9999999999998 78877777777765    555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=6.8e-18  Score=132.38  Aligned_cols=190  Identities=17%  Similarity=0.223  Sum_probs=103.8

Q ss_pred             ECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCc
Q 043038           14 SLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNK   92 (271)
Q Consensus        14 ~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   92 (271)
                      +++.+.+.+.... .+.+|+.|++.+|.++. ++     .+..+++|++|++++|.++...  .+..+++++++++++|.
T Consensus        25 ~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~-l~-----~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~   96 (227)
T d1h6ua2          25 AAGKSNVTDTVTQADLDGITTLSAFGTGVTT-IE-----GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNP   96 (227)
T ss_dssp             HTTCSSTTSEECHHHHHTCCEEECTTSCCCC-CT-----TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCC
T ss_pred             HhCCCCcCCcCCHHHcCCcCEEECCCCCCCc-ch-----hHhcCCCCcEeecCCceeeccc--ccccccccccccccccc
Confidence            4444444443321 14456666666665543 21     1223566666666666655221  24555666666666665


Q ss_pred             ccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-----------CCCCcccEEEeccCccCCCCchhhh
Q 043038           93 FIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-----------ERFSRMVVLNLRSNKFHGPLPTRFC  161 (271)
Q Consensus        93 ~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-----------~~~~~L~~L~l~~n~l~~~~~~~~~  161 (271)
                      ++ .++ .+..+++|+.++++++...+.  ..+...+.+..+.+           ..+++|+.|++++|.+++.  ..+.
T Consensus        97 ~~-~i~-~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~l~  170 (227)
T d1h6ua2          97 LK-NVS-AIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLA  170 (227)
T ss_dssp             CS-CCG-GGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGT
T ss_pred             cc-ccc-ccccccccccccccccccccc--chhccccchhhhhchhhhhchhhhhccccccccccccccccccc--hhhc
Confidence            54 222 355556666666655554421  11222333332221           2233455555666666532  2355


Q ss_pred             cCccccEEeccCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhh
Q 043038          162 DLAILQILDIADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIV  241 (271)
Q Consensus       162 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  241 (271)
                      .+++|+.|++++|++++ ++. +                                              ..+++|++|++
T Consensus       171 ~l~~L~~L~Ls~n~l~~-l~~-l----------------------------------------------~~l~~L~~L~L  202 (227)
T d1h6ua2         171 NLSKLTTLKADDNKISD-ISP-L----------------------------------------------ASLPNLIEVHL  202 (227)
T ss_dssp             TCTTCCEEECCSSCCCC-CGG-G----------------------------------------------GGCTTCCEEEC
T ss_pred             ccccceecccCCCccCC-Chh-h----------------------------------------------cCCCCCCEEEC
Confidence            66666777776666652 211 1                                              25677899999


Q ss_pred             cCCcccccccHhhhccCCCCEEEccC
Q 043038          242 SRNDLLKNVPLEVRNLKATQSLNFSH  267 (271)
Q Consensus       242 ~~n~l~~~~~~~l~~l~~L~~L~l~~  267 (271)
                      ++|++++ ++ .++.+++|+.|++++
T Consensus       203 s~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         203 KNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             TTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             cCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            9999876 44 489999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=6.9e-17  Score=123.28  Aligned_cols=131  Identities=23%  Similarity=0.221  Sum_probs=79.6

Q ss_pred             ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEcc
Q 043038           10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLS   89 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   89 (271)
                      .+.++.+++.+...++...+++++|++++|.++..++..   .|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~---~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCccccccc---ccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            346677777776443333457777777777775433221   12236777777777777765666667777777777777


Q ss_pred             CCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCC
Q 043038           90 NNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHG  154 (271)
Q Consensus        90 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~  154 (271)
                      +|+++...+..|.++++|+.|++++|.+++..++.+..+++           |+++++++|.+..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~-----------L~~l~L~~N~~~~  140 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS-----------LTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT-----------CCEEECTTCCBCC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcc-----------ccccccccccccc
Confidence            77777555566667777777777777776433344444333           3344466666553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=1e-16  Score=122.38  Aligned_cols=131  Identities=23%  Similarity=0.258  Sum_probs=105.2

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCC-CCCccccCCCCCCEEEccCCcccccCCcccccCCCcc
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQG-ELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLV  108 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  108 (271)
                      ..++++.+++.++. +|+.++      +.+++|++++|.|+. ..+..|.++++|+.|++++|.+....+..+..+++|+
T Consensus         9 ~~~~v~Cs~~~L~~-iP~~lp------~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_           9 EGTTVDCTGRGLKE-IPRDIP------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             ETTEEECTTSCCSS-CCSCCC------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             cCCEEEEeCCCcCc-cCCCCC------CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccc
Confidence            45678888998875 676543      578999999999974 3466788899999999999999877788888899999


Q ss_pred             EEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEeccCCccce
Q 043038          109 WLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIADNNLSG  178 (271)
Q Consensus       109 ~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  178 (271)
                      .|++++|++.+..+..+.++++           |+.|++++|.+++..+.+|..+++|+++++++|.+..
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~l~~-----------L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLGLHQ-----------LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTT-----------CCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             eeeeccccccccCHHHHhCCCc-----------ccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            9999999998554555655554           4466699999987777788899999999999998863

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=7.7e-17  Score=124.78  Aligned_cols=179  Identities=22%  Similarity=0.238  Sum_probs=119.4

Q ss_pred             ECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCc
Q 043038           14 SLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNK   92 (271)
Q Consensus        14 ~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   92 (271)
                      ++..+.+.+.++. .+.+++.|++++|.++. ++.     +..+++|++|++++|+++. ++ .+..+++|++|++++|+
T Consensus        30 ~l~~~~~~~~~~~~~L~~L~~L~l~~~~i~~-l~~-----l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~  101 (210)
T d1h6ta2          30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKS-VQG-----IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENK  101 (210)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCCCC-CTT-----GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC
T ss_pred             HhCcCccCCccCHHHhcCccEEECcCCCCCC-chh-----HhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccc
Confidence            4445555544433 25577788888887765 221     2347778888888888773 33 35677788888888887


Q ss_pred             ccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEecc
Q 043038           93 FIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDIA  172 (271)
Q Consensus        93 ~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  172 (271)
                      ++ .++ .+..+++|+.+++++|.+. .++ .+..++           .++.+++++|.+++  +..+..+++|+.++++
T Consensus       102 i~-~l~-~l~~l~~L~~L~l~~~~~~-~~~-~l~~l~-----------~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~  164 (210)
T d1h6ta2         102 VK-DLS-SLKDLKKLKSLSLEHNGIS-DIN-GLVHLP-----------QLESLYLGNNKITD--ITVLSRLTKLDTLSLE  164 (210)
T ss_dssp             CC-CGG-GGTTCTTCCEEECTTSCCC-CCG-GGGGCT-----------TCCEEECCSSCCCC--CGGGGGCTTCSEEECC
T ss_pred             cc-ccc-ccccccccccccccccccc-ccc-cccccc-----------cccccccccccccc--cccccccccccccccc
Confidence            77 344 4667778888888777765 222 333333           44556677777763  3356677888888888


Q ss_pred             CCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCcccccccH
Q 043038          173 DNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVPL  252 (271)
Q Consensus       173 ~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~  252 (271)
                      +|++++ ++. +                                              +.+++|+.|++++|.+.+ ++ 
T Consensus       165 ~n~l~~-i~~-l----------------------------------------------~~l~~L~~L~Ls~N~i~~-l~-  194 (210)
T d1h6ta2         165 DNQISD-IVP-L----------------------------------------------AGLTKLQNLYLSKNHISD-LR-  194 (210)
T ss_dssp             SSCCCC-CGG-G----------------------------------------------TTCTTCCEEECCSSCCCB-CG-
T ss_pred             cccccc-ccc-c----------------------------------------------cCCCCCCEEECCCCCCCC-Ch-
Confidence            887762 221 2                                              245677889999999865 55 


Q ss_pred             hhhccCCCCEEEccC
Q 043038          253 EVRNLKATQSLNFSH  267 (271)
Q Consensus       253 ~l~~l~~L~~L~l~~  267 (271)
                      .+.++++|++|++++
T Consensus       195 ~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         195 ALAGLKNLDVLELFS  209 (210)
T ss_dssp             GGTTCTTCSEEEEEE
T ss_pred             hhcCCCCCCEEEccC
Confidence            689999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.8e-17  Score=127.34  Aligned_cols=218  Identities=15%  Similarity=0.147  Sum_probs=145.1

Q ss_pred             ccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCC-CCccccCCCCCCEEEc
Q 043038           10 LLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE-LPDCWMSDQNLKILKL   88 (271)
Q Consensus        10 L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l   88 (271)
                      -+.++.++..++..++...+++++|++++|.++. +|.   .+|.++++|++|++++|.+... .+.+|.+++.++++++
T Consensus        10 ~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~-l~~---~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRV-IQK---GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCE-ECT---TTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCc-cCh---hHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            3678888888874433335699999999999975 442   2344599999999999988643 3557889999999988


Q ss_pred             cC-CcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCc-cc
Q 043038           89 SN-NKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLA-IL  166 (271)
Q Consensus        89 ~~-n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L  166 (271)
                      .. |.+....+..|..+++|+.+++.+|.+.. .+. ...+..++        .+..+...++.+....+..+..++ .+
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~-~~~-~~~~~~l~--------~l~~~~~~n~~l~~i~~~~~~~~~~~l  155 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPD-VHKIHSLQ--------KVLLDIQDNINIHTIERNSFVGLSFES  155 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCS-CCC-CTTTCBSS--------CEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred             cccccccccccccccccccccccccchhhhcc-ccc-cccccccc--------ccccccccccccccccccccccccccc
Confidence            75 56775677788999999999999998873 332 23333332        233444555566544444555543 67


Q ss_pred             cEEeccCCccceecCcccccccCCcc-----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhh
Q 043038          167 QILDIADNNLSGAIPNYINNVTGMVT-----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIV  241 (271)
Q Consensus       167 ~~L~l~~n~l~~~~~~~~~~~~~L~~-----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  241 (271)
                      +.+++++|+++ .++........+..     .|.+..++.                          ..+..+++|+.|++
T Consensus       156 ~~L~l~~n~l~-~i~~~~~~~~~l~~~~~l~~n~l~~l~~--------------------------~~f~~l~~L~~L~L  208 (242)
T d1xwdc1         156 VILWLNKNGIQ-EIHNCAFNGTQLDELNLSDNNNLEELPN--------------------------DVFHGASGPVILDI  208 (242)
T ss_dssp             EEEECCSSCCC-EECTTTTTTCCEEEEECTTCTTCCCCCT--------------------------TTTTTSCCCSEEEC
T ss_pred             eeeeccccccc-ccccccccchhhhccccccccccccccH--------------------------HHhcCCCCCCEEEC
Confidence            78888888887 44443333333322     222332211                          11246788999999


Q ss_pred             cCCcccccccHhhhccCCCCEEEccCC
Q 043038          242 SRNDLLKNVPLEVRNLKATQSLNFSHN  268 (271)
Q Consensus       242 ~~n~l~~~~~~~l~~l~~L~~L~l~~n  268 (271)
                      ++|++....+..|+.++.|+.+++.+.
T Consensus       209 s~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         209 SRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             TTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             CCCcCCccCHHHHcCCcccccCcCCCC
Confidence            999987544556788888887776543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=8.2e-16  Score=117.88  Aligned_cols=176  Identities=19%  Similarity=0.268  Sum_probs=118.7

Q ss_pred             EECcCCCCCCCcccc-CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCC
Q 043038           13 RSLDSNNMSGLLPLI-SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNN   91 (271)
Q Consensus        13 L~l~~n~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   91 (271)
                      ..++.+.+.+.++.. +++++.|++++|.++. ++     .+..+++|++|++++|++++ ++. ++++++|++|++++|
T Consensus        23 ~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~-l~-----~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n   94 (199)
T d2omxa2          23 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS-ID-----GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNN   94 (199)
T ss_dssp             HHTTCSSTTSEECHHHHTTCCEEECTTSCCCC-CT-----TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSS
T ss_pred             HHhCCCCCCCccCHHHhcCCCEEECCCCCCCC-cc-----ccccCCCcCcCccccccccC-ccc-ccCCccccccccccc
Confidence            345566666544332 6688888888888764 22     13347888888888888873 332 778888888888888


Q ss_pred             cccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCccccEEec
Q 043038           92 KFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLAILQILDI  171 (271)
Q Consensus        92 ~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  171 (271)
                      .+. ..+ .+..++.|+.+++++|.... . ..+..+           ++|+.|++++|.++. + +.+..+++++.+++
T Consensus        95 ~~~-~~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l-----------~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l  157 (199)
T d2omxa2          95 QIA-DIT-PLANLTNLTGLTLFNNQITD-I-DPLKNL-----------TNLNRLELSSNTISD-I-SALSGLTSLQQLNF  157 (199)
T ss_dssp             CCC-CCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTC-----------TTCSEEECCSSCCCC-C-GGGTTCTTCSEEEC
T ss_pred             ccc-ccc-cccccccccccccccccccc-c-cccchh-----------hhhHHhhhhhhhhcc-c-cccccccccccccc
Confidence            876 343 37778888888888877653 2 223333           345566688888763 3 35777888888888


Q ss_pred             cCCccceecCcccccccCCccccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHhhhhhcCCccccccc
Q 043038          172 ADNNLSGAIPNYINNVTGMVTTNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVMVTIVSRNDLLKNVP  251 (271)
Q Consensus       172 ~~n~l~~~~~~~~~~~~~L~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  251 (271)
                      .+|++++ ++. +                                              +.+++|+.|++++|++.+ ++
T Consensus       158 ~~n~l~~-l~~-l----------------------------------------------~~l~~L~~L~ls~N~i~~-i~  188 (199)
T d2omxa2         158 SSNQVTD-LKP-L----------------------------------------------ANLTTLERLDISSNKVSD-IS  188 (199)
T ss_dssp             CSSCCCC-CGG-G----------------------------------------------TTCTTCCEEECCSSCCCC-CG
T ss_pred             ccccccC-Ccc-c----------------------------------------------cCCCCCCEEECCCCCCCC-Cc
Confidence            8888763 221 1                                              245667888999998865 44


Q ss_pred             HhhhccCCCCEE
Q 043038          252 LEVRNLKATQSL  263 (271)
Q Consensus       252 ~~l~~l~~L~~L  263 (271)
                       .+.++++|++|
T Consensus       189 -~l~~L~~L~~L  199 (199)
T d2omxa2         189 -VLAKLTNLESL  199 (199)
T ss_dssp             -GGGGCTTCSEE
T ss_pred             -cccCCCCCCcC
Confidence             57888888875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=3.1e-15  Score=114.62  Aligned_cols=160  Identities=24%  Similarity=0.342  Sum_probs=124.0

Q ss_pred             cCCCcccEEECcCCCCCCCcc-ccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038            5 TKFTQLLFRSLDSNNMSGLLP-LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL   83 (271)
Q Consensus         5 ~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L   83 (271)
                      .++.+++.|++++|.+..... ..+++|++|++++|.+++ ++.     +.++++|++|++++|.+. .++ .+.+++.|
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~-~~~-----l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L  108 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITP-----LKNLTKLVDILMNNNQIA-DIT-PLANLTNL  108 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCC-CCG-GGTTCTTC
T ss_pred             HHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccC-ccc-----ccCCcccccccccccccc-ccc-cccccccc
Confidence            357889999999999875322 237899999999999986 322     445999999999999987 444 47899999


Q ss_pred             CEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcC
Q 043038           84 KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDL  163 (271)
Q Consensus        84 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l  163 (271)
                      +.|++++|.... . ..+..+++|+.+++++|.+. .++ .+..++           +++.|++.+|++++ ++ .+..+
T Consensus       109 ~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~-----------~L~~L~l~~n~l~~-l~-~l~~l  171 (199)
T d2omxa2         109 TGLTLFNNQITD-I-DPLKNLTNLNRLELSSNTIS-DIS-ALSGLT-----------SLQQLNFSSNQVTD-LK-PLANL  171 (199)
T ss_dssp             SEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCG-GGTTCT-----------TCSEEECCSSCCCC-CG-GGTTC
T ss_pred             cccccccccccc-c-cccchhhhhHHhhhhhhhhc-ccc-cccccc-----------cccccccccccccC-Cc-cccCC
Confidence            999999998873 3 34778999999999999887 333 355444           45566699999985 33 48899


Q ss_pred             ccccEEeccCCccceecCcccccccCCc
Q 043038          164 AILQILDIADNNLSGAIPNYINNVTGMV  191 (271)
Q Consensus       164 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~  191 (271)
                      ++|+.|++++|+++ .++ .++.+++|+
T Consensus       172 ~~L~~L~ls~N~i~-~i~-~l~~L~~L~  197 (199)
T d2omxa2         172 TTLERLDISSNKVS-DIS-VLAKLTNLE  197 (199)
T ss_dssp             TTCCEEECCSSCCC-CCG-GGGGCTTCS
T ss_pred             CCCCEEECCCCCCC-CCc-cccCCCCCC
Confidence            99999999999997 443 466666664

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.64  E-value=8.2e-16  Score=127.45  Aligned_cols=153  Identities=22%  Similarity=0.302  Sum_probs=103.1

Q ss_pred             cccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEc
Q 043038            9 QLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKL   88 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   88 (271)
                      ++++||++++.++ .+|+.+++|++|++++|.++. +|+.       ..+|++|++++|.++ .++..   .+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~~~~L~~L~Ls~N~l~~-lp~~-------~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPELPPHLESLVASCNSLTE-LPEL-------PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSCCTTCSEEECCSSCCSS-CCCC-------CTTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCCCCCCCEEECCCCCCcc-cccc-------hhhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            5889999999987 467778899999999999984 5643       457899999999987 44432   246999999


Q ss_pred             cCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccE--------EecCCCCcccEEEeccCccCCCC----
Q 043038           89 SNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALES--------LDVERFSRMVVLNLRSNKFHGPL----  156 (271)
Q Consensus        89 ~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~--------L~l~~~~~L~~L~l~~n~l~~~~----  156 (271)
                      ++|.++ .+|. +..+++|+.+++.++.+. ..+.....+..+..        ..+..++.++.+++..|......    
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~  182 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPL  182 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred             cccccc-cccc-hhhhccceeecccccccc-ccccccccccchhhccccccccccccccccceecccccccccccccccc
Confidence            999988 5554 567899999999998876 33333322222111        11134455666666655543210    


Q ss_pred             --------------chhhhcCccccEEeccCCccc
Q 043038          157 --------------PTRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       157 --------------~~~~~~l~~L~~L~l~~n~l~  177 (271)
                                    ...+..++.++.+++++|...
T Consensus       183 ~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~  217 (353)
T d1jl5a_         183 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLK  217 (353)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccccccccccccccccccccccccccc
Confidence                          112345667788888877665

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=8.1e-15  Score=114.53  Aligned_cols=172  Identities=19%  Similarity=0.280  Sum_probs=126.0

Q ss_pred             cCCCcccEEECcCCCCCCCcc-ccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCC
Q 043038            5 TKFTQLLFRSLDSNNMSGLLP-LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNL   83 (271)
Q Consensus         5 ~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L   83 (271)
                      +++.+|+.|++.+|.+....+ ..+++|++|++++|.+++..|      +.+++.++.+++++|.++ .+ ..+..++.|
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~------l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~L  109 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP------LKNLTKITELELSGNPLK-NV-SAIAGLQSI  109 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG------GTTCCSCCEEECCSCCCS-CC-GGGTTCTTC
T ss_pred             HHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc------cccccccccccccccccc-cc-ccccccccc
Confidence            456788889999998875422 126799999999998876322      344888999999988887 44 346788889


Q ss_pred             CEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEec-----------CCCCcccEEEeccCcc
Q 043038           84 KILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDV-----------ERFSRMVVLNLRSNKF  152 (271)
Q Consensus        84 ~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l-----------~~~~~L~~L~l~~n~l  152 (271)
                      +.++++++...+.  ..+...+.+..+.++.+.+...  ..+..+++++.+++           ..+++|+.|++++|++
T Consensus       110 ~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         110 KTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             CEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccchhhcccccceecccCCCcc
Confidence            9999988887632  2355667777888877776532  23556677777766           5667899999999999


Q ss_pred             CCCCchhhhcCccccEEeccCCccceecCcccccccCCcc
Q 043038          153 HGPLPTRFCDLAILQILDIADNNLSGAIPNYINNVTGMVT  192 (271)
Q Consensus       153 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  192 (271)
                      ++ ++ .++.+++|+.|++++|+++ .++ .+.+++.|+.
T Consensus       186 ~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~-~l~~l~~L~~  221 (227)
T d1h6ua2         186 SD-IS-PLASLPNLIEVHLKNNQIS-DVS-PLANTSNLFI  221 (227)
T ss_dssp             CC-CG-GGGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCE
T ss_pred             CC-Ch-hhcCCCCCCEEECcCCcCC-CCc-ccccCCCCCE
Confidence            84 44 4889999999999999998 443 3666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=7.1e-15  Score=113.51  Aligned_cols=160  Identities=22%  Similarity=0.293  Sum_probs=123.9

Q ss_pred             CCCcccEEECcCCCCCCCcc-ccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCC
Q 043038            6 KFTQLLFRSLDSNNMSGLLP-LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLK   84 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~   84 (271)
                      ++..++.|++++|.+....+ ..+++|++|++++|.+++ ++.     +..+++|++|++++|+++ .++ .+..+++|+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~-l~~-----~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~  115 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP-----LANLKNLGWLFLDENKVK-DLS-SLKDLKKLK  115 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCC
T ss_pred             HhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC-ccc-----cccCcccccccccccccc-ccc-ccccccccc
Confidence            46789999999999876443 237899999999999986 332     235899999999999998 555 578899999


Q ss_pred             EEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCchhhhcCc
Q 043038           85 ILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPTRFCDLA  164 (271)
Q Consensus        85 ~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  164 (271)
                      .|++++|.+. .+ ..+..++.++.+++++|.+.+ . ..+..++           +|+.+++++|++++ ++ .+..++
T Consensus       116 ~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~-~-~~~~~l~-----------~L~~l~l~~n~l~~-i~-~l~~l~  178 (210)
T d1h6ta2         116 SLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD-I-TVLSRLT-----------KLDTLSLEDNQISD-IV-PLAGLT  178 (210)
T ss_dssp             EEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC-C-GGGGGCT-----------TCSEEECCSSCCCC-CG-GGTTCT
T ss_pred             cccccccccc-cc-ccccccccccccccccccccc-c-ccccccc-----------cccccccccccccc-cc-cccCCC
Confidence            9999999987 33 357788999999999998873 2 2334444           45566689999974 43 378899


Q ss_pred             cccEEeccCCccceecCcccccccCCcc
Q 043038          165 ILQILDIADNNLSGAIPNYINNVTGMVT  192 (271)
Q Consensus       165 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~  192 (271)
                      +|+.|++++|+++ .++ .+.++++|+.
T Consensus       179 ~L~~L~Ls~N~i~-~l~-~l~~l~~L~~  204 (210)
T d1h6ta2         179 KLQNLYLSKNHIS-DLR-ALAGLKNLDV  204 (210)
T ss_dssp             TCCEEECCSSCCC-BCG-GGTTCTTCSE
T ss_pred             CCCEEECCCCCCC-CCh-hhcCCCCCCE
Confidence            9999999999997 454 4677777654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.6e-15  Score=109.68  Aligned_cols=122  Identities=19%  Similarity=0.168  Sum_probs=68.9

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccE
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVW  109 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  109 (271)
                      .++.|++++|.++. ++..+.    .+++|+.|++++|.++ .++ .|..+++|++|++++|+++...+..+..+++|+.
T Consensus        19 ~lr~L~L~~n~I~~-i~~~~~----~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          19 RDRELDLRGYKIPV-IENLGA----TLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             SCEEEECTTSCCCS-CCCGGG----GTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcEEECCCCCCCc-cCcccc----ccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            45666666666654 333222    2566677777777666 332 3566667777777777766433444455667777


Q ss_pred             EEccCCccccccCc--cccCCCCccEEecCCCCcccEEEeccCccCCCC---chhhhcCccccEEe
Q 043038          110 LDLGKNRLFGTIPA--TLKNCTALESLDVERFSRMVVLNLRSNKFHGPL---PTRFCDLAILQILD  170 (271)
Q Consensus       110 l~l~~n~l~~~~~~--~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~  170 (271)
                      +++++|.+. .+++  .+..           +++|++|++++|.++...   +..+..+++|+.||
T Consensus        92 L~L~~N~i~-~~~~l~~l~~-----------l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLV-ELGDLDPLAS-----------LKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCC-CGGGGGGGGG-----------CTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceecccccc-cccccccccc-----------ccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            777777665 2222  2222           334455556777665321   12456677777766

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.56  E-value=6e-14  Score=115.97  Aligned_cols=101  Identities=25%  Similarity=0.309  Sum_probs=75.5

Q ss_pred             CCcccEEECcCCCCCCCccccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEE
Q 043038            7 FTQLLFRSLDSNNMSGLLPLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKIL   86 (271)
Q Consensus         7 ~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   86 (271)
                      +++|++|++++|.++ .+|..+.+|+.|++++|.++. ++..       .+.|++|++++|.++ .+|. +..+++|+.|
T Consensus        57 ~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~l~~n~l~~-l~~l-------p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA-LSDL-------PPLLEYLGVSNNQLE-KLPE-LQNSSFLKII  125 (353)
T ss_dssp             CTTCSEEECCSSCCS-SCCCCCTTCCEEECCSSCCSC-CCSC-------CTTCCEEECCSSCCS-SCCC-CTTCTTCCEE
T ss_pred             CCCCCEEECCCCCCc-ccccchhhhhhhhhhhcccch-hhhh-------ccccccccccccccc-cccc-hhhhccceee
Confidence            478999999999998 567778899999999999875 3321       246999999999998 6665 5788999999


Q ss_pred             EccCCcccccCC------------------cccccCCCccEEEccCCccc
Q 043038           87 KLSNNKFIGNLP------------------NSFGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        87 ~l~~n~~~~~~~------------------~~~~~l~~L~~l~l~~n~l~  118 (271)
                      +++++.+.....                  ..+..++.++.+.+..|...
T Consensus       126 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_         126 DVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccccccccccchhhccccccccccccccccceeccccccccc
Confidence            999988752211                  12334556667777666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.5e-14  Score=111.16  Aligned_cols=197  Identities=13%  Similarity=0.074  Sum_probs=129.0

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccC-CcccccCCCcc
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNL-PNSFGSLAFLV  108 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~  108 (271)
                      ..+.++.++..++. +|..++      +.+++|++++|+++...+.+|.++++|++|++++|.+...+ +..|..++.++
T Consensus         9 ~~~~i~c~~~~l~~-iP~~l~------~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~   81 (242)
T d1xwdc1           9 SNRVFLCQESKVTE-IPSDLP------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   81 (242)
T ss_dssp             CSSEEEEESCSCSS-CCSCSC------SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCC
T ss_pred             cCCEEEEeCCCCCC-cCCCCC------CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccc
Confidence            34677888888774 665443      47899999999998445557899999999999999876443 45688899999


Q ss_pred             EEEccC-CccccccCccccCCCCccEEecCCCCcccEEEeccCccCCCCch-hhhcCccccEEeccCCccceecCccccc
Q 043038          109 WLDLGK-NRLFGTIPATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLPT-RFCDLAILQILDIADNNLSGAIPNYINN  186 (271)
Q Consensus       109 ~l~l~~-n~l~~~~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~  186 (271)
                      .+.+.. |.+....+..+..+++           |+.+++++|.++...+. .+..+..+..+..+++.+....+..+..
T Consensus        82 ~l~~~~~n~l~~~~~~~~~~l~~-----------L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~  150 (242)
T d1xwdc1          82 EIRIEKANNLLYINPEAFQNLPN-----------LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG  150 (242)
T ss_dssp             EEEEECCTTCCEECTTSEECCTT-----------CCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTT
T ss_pred             ccccccccccccccccccccccc-----------ccccccchhhhccccccccccccccccccccccccccccccccccc
Confidence            998765 5565444555555554           55666888888743332 2344566666677777776444455554


Q ss_pred             cc-CCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhHh-hhhhcCCcccccccHhhhccCCC
Q 043038          187 VT-GMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLVM-VTIVSRNDLLKNVPLEVRNLKAT  260 (271)
Q Consensus       187 ~~-~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~l~~l~~L  260 (271)
                      +. .++.    .+.+.......                           ...++++ .+++++|.+....+..|.++++|
T Consensus       151 ~~~~l~~L~l~~n~l~~i~~~~---------------------------~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L  203 (242)
T d1xwdc1         151 LSFESVILWLNKNGIQEIHNCA---------------------------FNGTQLDELNLSDNNNLEELPNDVFHGASGP  203 (242)
T ss_dssp             SBSSCEEEECCSSCCCEECTTT---------------------------TTTCCEEEEECTTCTTCCCCCTTTTTTSCCC
T ss_pred             ccccceeeeccccccccccccc---------------------------ccchhhhccccccccccccccHHHhcCCCCC
Confidence            43 2222    33333321110                           0123333 34567777865344568999999


Q ss_pred             CEEEccCCCCC
Q 043038          261 QSLNFSHNTFT  271 (271)
Q Consensus       261 ~~L~l~~n~i~  271 (271)
                      ++|++++|+|+
T Consensus       204 ~~L~Ls~N~l~  214 (242)
T d1xwdc1         204 VILDISRTRIH  214 (242)
T ss_dssp             SEEECTTSCCC
T ss_pred             CEEECCCCcCC
Confidence            99999999885

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=1.5e-15  Score=126.22  Aligned_cols=239  Identities=15%  Similarity=0.111  Sum_probs=136.7

Q ss_pred             ccCCCcccEEECcCCCCCCCccc-------cCCCccEEEccCCccccc---cc---hhhhhhccCCCcccEEEccCcccC
Q 043038            4 LTKFTQLLFRSLDSNNMSGLLPL-------ISSNLVYLGLSDNSFLGS---IS---HFLCDKINETKRLEALKLNDNYLQ   70 (271)
Q Consensus         4 ~~~~~~L~~L~l~~n~~~~~~~~-------~~~~L~~L~l~~n~~~~~---~~---~~~~~~~~~~~~L~~L~l~~n~l~   70 (271)
                      +.+...++.|++++|.+......       ..++++.++++++.....   .+   ..+...+..+++|++|++++|.++
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  106 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  106 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccc
Confidence            44567788888888877543211       135788888887654421   11   223444556778888888888876


Q ss_pred             CC----CCccccCCCCCCEEEccCCcccccCCc-------------ccccCCCccEEEccCCccccccCccccCCCCccE
Q 043038           71 GE----LPDCWMSDQNLKILKLSNNKFIGNLPN-------------SFGSLAFLVWLDLGKNRLFGTIPATLKNCTALES  133 (271)
Q Consensus        71 ~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~-------------~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~  133 (271)
                      ..    +...+...++|++|++++|.++.....             .....+.++.+.+++|.+.......+...     
T Consensus       107 ~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~-----  181 (344)
T d2ca6a1         107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT-----  181 (344)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH-----
T ss_pred             cccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch-----
Confidence            43    233344567888888888876421100             11235677788888777653221111110     


Q ss_pred             EecCCCCcccEEEeccCccCCC-----CchhhhcCccccEEeccCCcccee----cCcccccccCCcc----cccccccc
Q 043038          134 LDVERFSRMVVLNLRSNKFHGP-----LPTRFCDLAILQILDIADNNLSGA----IPNYINNVTGMVT----TNSFSRSA  200 (271)
Q Consensus       134 L~l~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~----~n~~~~~~  200 (271)
                        +...+.|+.|+++.|.++..     +...+...++|+.|++++|.++..    +...+..++.|+.    .|.+...+
T Consensus       182 --l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g  259 (344)
T d2ca6a1         182 --FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG  259 (344)
T ss_dssp             --HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred             --hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchh
Confidence              01233455666777776531     223355667788888888876522    2233444555544    23332211


Q ss_pred             ccccccccchhhhhhhhceeccccchhhHHH--HHhhHhhhhhcCCccccc----ccHhhh-ccCCCCEEEccCCCCC
Q 043038          201 QQHLHVPLDVDVILMEKASVVSREEVVEYNE--ILNLVMVTIVSRNDLLKN----VPLEVR-NLKATQSLNFSHNTFT  271 (271)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~----~~~~l~-~l~~L~~L~l~~n~i~  271 (271)
                      ...+                      ...+.  ..+.|+.|++++|.+..+    +...+. +++.|+.|++++|+|+
T Consensus       260 ~~~l----------------------~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         260 AAAV----------------------VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHH----------------------HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hHHH----------------------HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            1000                      11111  124689999999998654    444553 6789999999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1.8e-13  Score=96.31  Aligned_cols=100  Identities=26%  Similarity=0.243  Sum_probs=43.6

Q ss_pred             EEECcCCCCCCCccc-cCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccC
Q 043038           12 FRSLDSNNMSGLLPL-ISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSN   90 (271)
Q Consensus        12 ~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   90 (271)
                      +|++++|.++...+- .+.+|++|++++|.++. +|..+.    .+++|++|++++|.++ .+| .+..+++|+++++++
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~-lp~~~~----~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALA----ALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC-CCGGGG----GCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCc-chhhhh----hhhccccccccccccc-ccC-ccccccccCeEECCC
Confidence            455555555422111 13445555555555443 332222    2445555555555554 222 244445555555555


Q ss_pred             CcccccC-CcccccCCCccEEEccCCccc
Q 043038           91 NKFIGNL-PNSFGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        91 n~~~~~~-~~~~~~l~~L~~l~l~~n~l~  118 (271)
                      |+++... ...+..+++|+.+++++|.+.
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            5544211 123444444555555554443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.4e-14  Score=103.44  Aligned_cols=106  Identities=21%  Similarity=0.204  Sum_probs=54.1

Q ss_pred             CCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCcc-ccCCCCccEE
Q 043038           56 TKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPAT-LKNCTALESL  134 (271)
Q Consensus        56 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~-~~~l~~L~~L  134 (271)
                      ..++++|++++|+|+ .++..+..+++|+.|++++|.++ .++ .+..+++|+.|++++|.+. .++.. +..++     
T Consensus        17 ~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~-----   87 (162)
T d1a9na_          17 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALP-----   87 (162)
T ss_dssp             TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCT-----
T ss_pred             cCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCcccccccc-----
Confidence            445566666666665 34444455556666666666655 232 2555556666666666655 23322 22233     


Q ss_pred             ecCCCCcccEEEeccCccCCCCc--hhhhcCccccEEeccCCccc
Q 043038          135 DVERFSRMVVLNLRSNKFHGPLP--TRFCDLAILQILDIADNNLS  177 (271)
Q Consensus       135 ~l~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~  177 (271)
                            +|+.|++++|.++. ++  ..+..+++|+.+++++|.++
T Consensus        88 ------~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          88 ------DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ------TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ------ccccceeccccccc-cccccccccccccchhhcCCCccc
Confidence                  23344455555542 22  23455556666666666554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.3e-15  Score=128.84  Aligned_cols=110  Identities=17%  Similarity=0.167  Sum_probs=67.3

Q ss_pred             cccEEECcCCCCCCCc----cccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCC----CCccccC-
Q 043038            9 QLLFRSLDSNNMSGLL----PLISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE----LPDCWMS-   79 (271)
Q Consensus         9 ~L~~L~l~~n~~~~~~----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~-   79 (271)
                      .|+.||++++.+++..    .+.++++++|++++|.++......+..++..+++|++|++++|.++..    +...+.. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            4677777777776431    122567777777777776544445555566677777777777776521    1222222 


Q ss_pred             CCCCCEEEccCCccccc----CCcccccCCCccEEEccCCccc
Q 043038           80 DQNLKILKLSNNKFIGN----LPNSFGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        80 l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~l~  118 (271)
                      ..+|++|++++|+++..    ++..+...++|+++++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            24677777777777532    2334555677777777777654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=2.4e-13  Score=95.66  Aligned_cols=77  Identities=27%  Similarity=0.339  Sum_probs=40.6

Q ss_pred             EEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEc
Q 043038           33 YLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDL  112 (271)
Q Consensus        33 ~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l  112 (271)
                      +|++++|.++. ++.     +..++.|++|++++|+++ .+|..|..+++|+.|++++|+++ .++ .+..+++|+.+++
T Consensus         2 ~L~Ls~n~l~~-l~~-----l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l   72 (124)
T d1dcea3           2 VLHLAHKDLTV-LCH-----LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLL   72 (124)
T ss_dssp             EEECTTSCCSS-CCC-----GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEEC
T ss_pred             EEEcCCCCCCC-Ccc-----cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEEC
Confidence            45566666553 221     222555566666666555 44555555555666666665555 233 2555555555555


Q ss_pred             cCCccc
Q 043038          113 GKNRLF  118 (271)
Q Consensus       113 ~~n~l~  118 (271)
                      ++|.+.
T Consensus        73 ~~N~i~   78 (124)
T d1dcea3          73 CNNRLQ   78 (124)
T ss_dssp             CSSCCC
T ss_pred             CCCccC
Confidence            555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.4e-14  Score=115.68  Aligned_cols=150  Identities=19%  Similarity=0.156  Sum_probs=85.2

Q ss_pred             CccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCC-ccccc-CCcccccCCCc
Q 043038           30 NLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNN-KFIGN-LPNSFGSLAFL  107 (271)
Q Consensus        30 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L  107 (271)
                      .|++|+++++.++.   ..+...+..+++|++|++++|.++...+..+..+++|++|++++| .++.. +...+..+++|
T Consensus        47 ~L~~LdLs~~~i~~---~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          47 RVQHMDLSNSVIEV---STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCCEEECTTCEECH---HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCEEECCCCccCH---HHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            78888888887653   233334456788888888888877566667777888888888875 45421 11223456788


Q ss_pred             cEEEccCCc-cccc-cCccccCCCCccEEecCCCCcccEEEeccC--ccCC-CCchhhhcCccccEEeccCC-ccceecC
Q 043038          108 VWLDLGKNR-LFGT-IPATLKNCTALESLDVERFSRMVVLNLRSN--KFHG-PLPTRFCDLAILQILDIADN-NLSGAIP  181 (271)
Q Consensus       108 ~~l~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n--~l~~-~~~~~~~~l~~L~~L~l~~n-~l~~~~~  181 (271)
                      +.|++++|. +++. +...+...          +++|+.|+++++  .+++ .+...+..+++|++|++++| .+++...
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~----------~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~  193 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHV----------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF  193 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHS----------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred             cccccccccccccccchhhhccc----------ccccchhhhcccccccccccccccccccccccccccccccCCCchhh
Confidence            888888764 3321 11222221          223445555543  2221 12223345667777777665 3444444


Q ss_pred             cccccccCCcc
Q 043038          182 NYINNVTGMVT  192 (271)
Q Consensus       182 ~~~~~~~~L~~  192 (271)
                      ..+..++.|+.
T Consensus       194 ~~l~~~~~L~~  204 (284)
T d2astb2         194 QEFFQLNYLQH  204 (284)
T ss_dssp             GGGGGCTTCCE
T ss_pred             hhhcccCcCCE
Confidence            44444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-13  Score=111.28  Aligned_cols=172  Identities=17%  Similarity=0.144  Sum_probs=114.8

Q ss_pred             CCCcccEEECcCCCCCCCc-c---ccCCCccEEEccCCccccccchhhhhhccCCCcccEEEccCc-ccCCC-CCccccC
Q 043038            6 KFTQLLFRSLDSNNMSGLL-P---LISSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDN-YLQGE-LPDCWMS   79 (271)
Q Consensus         6 ~~~~L~~L~l~~n~~~~~~-~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~   79 (271)
                      ...+|++||+++|.+.... +   ..+++|++|++++|.+++..+..    +..+++|++|++++| .++.. +...+..
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~Ls~c~~itd~~l~~l~~~  119 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT----LAKNSNLVRLNLSGCSGFSEFALQTLLSS  119 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH----HTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH----HhcCCCCcCccccccccccccccchhhHH
Confidence            4568999999999876432 2   22679999999999876544433    445899999999996 56522 2223457


Q ss_pred             CCCCCEEEccCCc-cccc-CCccccc-CCCccEEEccCCc--cccc-cCccccCCCCccEEecCCCCcccEEEeccC-cc
Q 043038           80 DQNLKILKLSNNK-FIGN-LPNSFGS-LAFLVWLDLGKNR--LFGT-IPATLKNCTALESLDVERFSRMVVLNLRSN-KF  152 (271)
Q Consensus        80 l~~L~~L~l~~n~-~~~~-~~~~~~~-l~~L~~l~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~~~~L~~L~l~~n-~l  152 (271)
                      +++|++|++++|. ++.. ....+.. .++|+.++++++.  +++. +......           +++|++|++++| .+
T Consensus       120 ~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~-----------~~~L~~L~L~~~~~i  188 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-----------CPNLVHLDLSDSVML  188 (284)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-----------CTTCSEEECTTCTTC
T ss_pred             HHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccc-----------cccccccccccccCC
Confidence            8999999999874 4321 1222333 4689999998763  3321 1111223           445666678776 46


Q ss_pred             CCCCchhhhcCccccEEeccCC-ccceecCcccccccCCcc
Q 043038          153 HGPLPTRFCDLAILQILDIADN-NLSGAIPNYINNVTGMVT  192 (271)
Q Consensus       153 ~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~  192 (271)
                      ++.....+..+++|++|++++| .+++.....++++++|+.
T Consensus       189 td~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~  229 (284)
T d2astb2         189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  229 (284)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             CchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCE
Confidence            6666677888999999999996 566554555666666655

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.38  E-value=4.5e-14  Score=117.06  Aligned_cols=220  Identities=15%  Similarity=0.144  Sum_probs=144.1

Q ss_pred             CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCC----------CCccccCCCCCCEEEccCCcccccC
Q 043038           28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGE----------LPDCWMSDQNLKILKLSNNKFIGNL   97 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----------~~~~~~~l~~L~~L~l~~n~~~~~~   97 (271)
                      ...++.|++++|.++......+...+...+.|+.++++++.....          +..++..+++|++|++++|.++...
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            358999999999998777777888888889999999998765421          1233456789999999999987432


Q ss_pred             ----CcccccCCCccEEEccCCccccccCccccCCCCccEEe----cCCCCcccEEEeccCccCCC----CchhhhcCcc
Q 043038           98 ----PNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALESLD----VERFSRMVVLNLRSNKFHGP----LPTRFCDLAI  165 (271)
Q Consensus        98 ----~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~L~----l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~  165 (271)
                          ...+...++|+.+++++|.+.......+..  .+..+.    ....+.|+.+++++|.++..    +...+...+.
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             ccchhhhhcccccchheecccccccccccccccc--cccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence                233446789999999999875321111111  011110    02345678888999888633    2334567789


Q ss_pred             ccEEeccCCcccee-----cCcccccccCCcc----ccccccccccccccccchhhhhhhhceeccccchhhHHHHHhhH
Q 043038          166 LQILDIADNNLSGA-----IPNYINNVTGMVT----TNSFSRSAQQHLHVPLDVDVILMEKASVVSREEVVEYNEILNLV  236 (271)
Q Consensus       166 L~~L~l~~n~l~~~-----~~~~~~~~~~L~~----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  236 (271)
                      ++.+++++|++...     +...+..++.|+.    .|.+...+                      ...+...+..+++|
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g----------------------~~~L~~~l~~~~~L  245 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----------------------SSALAIALKSWPNL  245 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----------------------HHHHHHHGGGCTTC
T ss_pred             hcccccccccccccccccchhhhhcchhhhcccccccccccccc----------------------cccccccccccccc
Confidence            99999999998632     2233445555554    22222110                      00112222457889


Q ss_pred             hhhhhcCCcccccccHh----hhc--cCCCCEEEccCCCCC
Q 043038          237 MVTIVSRNDLLKNVPLE----VRN--LKATQSLNFSHNTFT  271 (271)
Q Consensus       237 ~~L~L~~n~l~~~~~~~----l~~--l~~L~~L~l~~n~i~  271 (271)
                      ++|++++|.+.+.....    +..  .+.|++|++++|.|+
T Consensus       246 ~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             hhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            99999999997654443    333  467999999999874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.3e-14  Score=121.49  Aligned_cols=90  Identities=20%  Similarity=0.229  Sum_probs=63.3

Q ss_pred             cCCCcccEEECcCCCCCCCc----c---ccCCCccEEEccCCccccccchhhhhhccC-CCcccEEEccCcccCCC----
Q 043038            5 TKFTQLLFRSLDSNNMSGLL----P---LISSNLVYLGLSDNSFLGSISHFLCDKINE-TKRLEALKLNDNYLQGE----   72 (271)
Q Consensus         5 ~~~~~L~~L~l~~n~~~~~~----~---~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~----   72 (271)
                      ..+++++.|++++|.++...    +   ...++|+.|++++|.++......++..+.. ..+|++|++++|.++..    
T Consensus        24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~  103 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  103 (460)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccc
Confidence            35678889999999876321    2   125689999999998865333444544433 34799999999988743    


Q ss_pred             CCccccCCCCCCEEEccCCccc
Q 043038           73 LPDCWMSDQNLKILKLSNNKFI   94 (271)
Q Consensus        73 ~~~~~~~l~~L~~L~l~~n~~~   94 (271)
                      ++.++..+++|++|++++|.++
T Consensus       104 l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCH
T ss_pred             ccchhhccccccccccccccch
Confidence            3456677889999999988764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=1e-13  Score=105.74  Aligned_cols=127  Identities=22%  Similarity=0.211  Sum_probs=92.8

Q ss_pred             CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCc
Q 043038           28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFL  107 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  107 (271)
                      +++|++|++++|.++. ++. +..    +++|++|++++|.++ .++..+..++.|+.|++++|+++ .++ .+..+++|
T Consensus        47 L~~L~~L~Ls~n~I~~-i~~-l~~----l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L  117 (198)
T d1m9la_          47 LKACKHLALSTNNIEK-ISS-LSG----MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNL  117 (198)
T ss_dssp             TTTCCEEECSEEEESC-CCC-HHH----HTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHS
T ss_pred             ccccceeECcccCCCC-ccc-ccC----CccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccc
Confidence            6799999999999875 432 443    889999999999998 66666666678999999999998 343 47788999


Q ss_pred             cEEEccCCccccccC--ccccCCCCccEEecCCCCcccEEEeccCccCCCCc----------hhhhcCccccEEeccCCc
Q 043038          108 VWLDLGKNRLFGTIP--ATLKNCTALESLDVERFSRMVVLNLRSNKFHGPLP----------TRFCDLAILQILDIADNN  175 (271)
Q Consensus       108 ~~l~l~~n~l~~~~~--~~~~~l~~L~~L~l~~~~~L~~L~l~~n~l~~~~~----------~~~~~l~~L~~L~l~~n~  175 (271)
                      +.|++++|.+. .++  ..+..+           ++|+.|++++|.++...+          ..+..+++|+.||  +..
T Consensus       118 ~~L~L~~N~i~-~~~~~~~l~~l-----------~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~  183 (198)
T d1m9la_         118 RVLYMSNNKIT-NWGEIDKLAAL-----------DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP  183 (198)
T ss_dssp             SEEEESEEECC-CHHHHHHHTTT-----------TTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGG
T ss_pred             cccccccchhc-cccccccccCC-----------CccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--Ccc
Confidence            99999999987 333  234444           456667788888753222          1266789999887  444


Q ss_pred             cc
Q 043038          176 LS  177 (271)
Q Consensus       176 l~  177 (271)
                      ++
T Consensus       184 I~  185 (198)
T d1m9la_         184 VD  185 (198)
T ss_dssp             GT
T ss_pred             CC
Confidence            43

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.3e-11  Score=87.95  Aligned_cols=68  Identities=19%  Similarity=0.121  Sum_probs=40.1

Q ss_pred             CCcccEEEccCc-ccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCcc
Q 043038           56 TKRLEALKLNDN-YLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPAT  124 (271)
Q Consensus        56 ~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~  124 (271)
                      ++++++|++++| .++...+.+|.++++|+.|++++|+++...+..|..+++|+.|++++|+++ .+|..
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~   98 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWK   98 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCST
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChh
Confidence            556666666544 355334455666666666666666666444555666666666666666666 44443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=7.1e-11  Score=86.14  Aligned_cols=112  Identities=19%  Similarity=0.083  Sum_probs=85.2

Q ss_pred             CCccCCCcccEEECcCCCCCCCcccc--CCCccEEEccCC-ccccccchhhhhhccCCCcccEEEccCcccCCCCCcccc
Q 043038            2 PNLTKFTQLLFRSLDSNNMSGLLPLI--SSNLVYLGLSDN-SFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWM   78 (271)
Q Consensus         2 ~~~~~~~~L~~L~l~~n~~~~~~~~~--~~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~   78 (271)
                      |+.......+.++++++.+...+...  +++++.|++.+| .++. ++   ..+|.++++|+.|++++|+++...+.+|.
T Consensus         2 P~~C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~-i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~   77 (156)
T d2ifga3           2 PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQH-LE---LRDLRGLGELRNLTIVKSGLRFVAPDAFH   77 (156)
T ss_dssp             CSSSCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCE-EC---GGGSCSCCCCSEEECCSSCCCEECTTGGG
T ss_pred             cCCCCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccc-cC---chhhccccccCcceeeccccCCccccccc
Confidence            44455666778899988877543322  469999999866 4665 33   23355699999999999999966788899


Q ss_pred             CCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccc
Q 043038           79 SDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        79 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~  118 (271)
                      .+++|++|++++|+++ .+|.......+++.+++++|.+.
T Consensus        78 ~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          78 FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            9999999999999999 55444444557999999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=7.9e-13  Score=100.74  Aligned_cols=109  Identities=22%  Similarity=0.257  Sum_probs=86.7

Q ss_pred             cCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccccccCccccCCCCccE
Q 043038           54 NETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLFGTIPATLKNCTALES  133 (271)
Q Consensus        54 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~l~~L~~  133 (271)
                      ..+++|++|++++|.|+ .++ .+..+++|+.|++++|.++ .++..+..+++|+.+++++|.++ .++ .+..++    
T Consensus        45 ~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~----  115 (198)
T d1m9la_          45 STLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLV----  115 (198)
T ss_dssp             HHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHH----
T ss_pred             hcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccc----
Confidence            34899999999999998 554 5889999999999999998 56665556678999999999988 333 344444    


Q ss_pred             EecCCCCcccEEEeccCccCCCCc--hhhhcCccccEEeccCCcccee
Q 043038          134 LDVERFSRMVVLNLRSNKFHGPLP--TRFCDLAILQILDIADNNLSGA  179 (271)
Q Consensus       134 L~l~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~  179 (271)
                             +|+.|++++|.+++ ++  ..+..+++|+.|++++|.+...
T Consensus       116 -------~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         116 -------NLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             -------HSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             -------cccccccccchhcc-ccccccccCCCccceeecCCCccccC
Confidence                   56677799999974 44  4688899999999999998643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.7e-08  Score=72.53  Aligned_cols=64  Identities=28%  Similarity=0.151  Sum_probs=38.6

Q ss_pred             CCCcccEEEccCcccCCC--CCccccCCCCCCEEEccCCcccccCCcccccCCCccEEEccCCccc
Q 043038           55 ETKRLEALKLNDNYLQGE--LPDCWMSDQNLKILKLSNNKFIGNLPNSFGSLAFLVWLDLGKNRLF  118 (271)
Q Consensus        55 ~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~  118 (271)
                      .++.|++|++++|+++..  ++..+..+++|+.|++++|.++...+-.+.....++.+++.+|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            367777777777777632  1234556677777777777776322222223445667777777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.03  E-value=1.4e-06  Score=63.49  Aligned_cols=43  Identities=16%  Similarity=0.309  Sum_probs=18.3

Q ss_pred             hccCCCcccEEEccCcccCCC----CCccccCCCCCCEEEccCCccc
Q 043038           52 KINETKRLEALKLNDNYLQGE----LPDCWMSDQNLKILKLSNNKFI   94 (271)
Q Consensus        52 ~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~   94 (271)
                      .+...+.|++|++++|.++..    +...+...+.|++|++++|.++
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            333344455555555544311    1122233344555555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=5.7e-07  Score=65.25  Aligned_cols=82  Identities=22%  Similarity=0.234  Sum_probs=58.0

Q ss_pred             CCCccEEEccCCccccccchhhhhhccCCCcccEEEccCcccCCCCCccccCCCCCCEEEccCCcccccCCc-------c
Q 043038           28 SSNLVYLGLSDNSFLGSISHFLCDKINETKRLEALKLNDNYLQGELPDCWMSDQNLKILKLSNNKFIGNLPN-------S  100 (271)
Q Consensus        28 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-------~  100 (271)
                      +++|++|++++|.++...+  +...+..+++|+.|++++|.++...+-.+.....|+.+++++|.+......       .
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~--~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDD--MSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSG--GGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             CCCCCEeeCCCccccCCch--hHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            5689999999999986322  222333489999999999999843333444566799999999998744332       1


Q ss_pred             cccCCCccEEE
Q 043038          101 FGSLAFLVWLD  111 (271)
Q Consensus       101 ~~~l~~L~~l~  111 (271)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            44567777765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.92  E-value=3.2e-06  Score=61.46  Aligned_cols=113  Identities=14%  Similarity=0.117  Sum_probs=58.7

Q ss_pred             CCCcccEEEccCc-ccCCC----CCccccCCCCCCEEEccCCccccc----CCcccccCCCccEEEccCCccccccCccc
Q 043038           55 ETKRLEALKLNDN-YLQGE----LPDCWMSDQNLKILKLSNNKFIGN----LPNSFGSLAFLVWLDLGKNRLFGTIPATL  125 (271)
Q Consensus        55 ~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~l~~~~~~~~  125 (271)
                      +.+.|++|+++++ .++..    +..++...+.|++|++++|.++..    +...+...+.|+.|++++|.+.+.....+
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3566777777653 34421    223445556677777777766522    12233345667777777776653221111


Q ss_pred             c-CCCCccEEecCCCCcccEEEeccCccCCC-------CchhhhcCccccEEeccCCc
Q 043038          126 K-NCTALESLDVERFSRMVVLNLRSNKFHGP-------LPTRFCDLAILQILDIADNN  175 (271)
Q Consensus       126 ~-~l~~L~~L~l~~~~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~  175 (271)
                      . .+        ...+.|++|++++|.+...       +...+...+.|+.++++.+.
T Consensus        93 ~~aL--------~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          93 LRST--------LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHT--------TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHH--------HhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            1 11        1233445555666544321       23445556777777776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.41  E-value=2.3e-05  Score=56.62  Aligned_cols=21  Identities=5%  Similarity=-0.086  Sum_probs=13.5

Q ss_pred             CchhhhcCccccEEeccCCcc
Q 043038          156 LPTRFCDLAILQILDIADNNL  176 (271)
Q Consensus       156 ~~~~~~~l~~L~~L~l~~n~l  176 (271)
                      +...+...+.|+.|++..+..
T Consensus       124 La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCcCEEeCcCCCC
Confidence            344556677778887776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.40  E-value=2.6e-05  Score=56.34  Aligned_cols=90  Identities=14%  Similarity=0.162  Sum_probs=49.6

Q ss_pred             CCccEEEccC-CccccccchhhhhhccCCCcccEEEccCcccCCC----CCccccCCCCCCEEEccCCccccc----CCc
Q 043038           29 SNLVYLGLSD-NSFLGSISHFLCDKINETKRLEALKLNDNYLQGE----LPDCWMSDQNLKILKLSNNKFIGN----LPN   99 (271)
Q Consensus        29 ~~L~~L~l~~-n~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~   99 (271)
                      +.|+.|++++ +.++...-..+..++...+.|++|++++|.++..    +...+...+.++.+++++|.++..    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4666666665 3454433344555555667777777777766532    222344456677777777766422    123


Q ss_pred             ccccCCCccEEEc--cCCccc
Q 043038          100 SFGSLAFLVWLDL--GKNRLF  118 (271)
Q Consensus       100 ~~~~l~~L~~l~l--~~n~l~  118 (271)
                      .+...++++.+++  .+|.+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHhCccccEEeeccCCCcCc
Confidence            3445566666555  344444