Citrus Sinensis ID: 043050

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
TRRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMK
Secondary Structure (PSIPRED)
ccccccccccEEEEccccEEEEEccccccccccccEEEEEcccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcccEEEEcccccccccccccEEEEEEccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHcc
Coil and Loop (DISEMBL)
trrneptvkgtitfdenstiaispvnfnglpkydgccfyigtpqkkdyflcaetpGAARAWVSTLHAAQLVLKAHKEAVNslsgngsaklGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTmtnritdgpmddlsimk
Flexible Loop (DISEMBL)
trrneptvkgtitfdenstiaiSPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNalgtmtnritdgpmddlsimk
Low Complexity Region (SEG)
TRRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGtvatvvaaanstaQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMK
Disordered region (IsUnstruct)
**********TITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAAN***************I*************************
Disordered Region (DISOPRED)
******T****ITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKA*************AKLGTVATVVAAANSTAQECSKEIEAAMQISLRN************PMDDLSIMK
Disordered Region (DISEMBL)
*********GTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMK
Disordered Region (DISPRO)
******TVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGT***********DL****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TRRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
357494193	492	hypothetical protein MTR_5g091000 [Medic	0.992	0.286	0.914	1e-72
356553844	490	PREDICTED: uncharacterized protein LOC10	0.992	0.287	0.914	1e-72
356501455	490	PREDICTED: uncharacterized protein LOC10	0.992	0.287	0.914	2e-72
255558688	499	conserved hypothetical protein [Ricinus	1.0	0.284	0.894	5e-72
224082584	501	predicted protein [Populus trichocarpa]	1.0	0.283	0.887	9e-72
225446797	500	PREDICTED: uncharacterized protein LOC10	0.992	0.282	0.879	2e-69
449502140	487	PREDICTED: uncharacterized protein LOC10	0.992	0.289	0.843	7e-67
449460032	490	PREDICTED: uncharacterized protein LOC10	0.992	0.287	0.843	8e-67
224066555	501	predicted protein [Populus trichocarpa]	1.0	0.283	0.880	1e-66
42570991	381	Pleckstrin homology (PH) domain-containi	1.0	0.372	0.830	3e-66

>gi|357494193|ref|XP_003617385.1| hypothetical protein MTR_5g091000 [Medicago truncatula] gi|355518720|gb|AET00344.1| hypothetical protein MTR_5g091000 [Medicago truncatula]

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/141 (91%), Positives = 131/141 (92%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
           RRNEPTVKGTI FD NSTI +SPVNFNGLPKYDGCC YIGTPQKKDYFLCAETPGAARAW
Sbjct: 63  RRNEPTVKGTILFDANSTITVSPVNFNGLPKYDGCCIYIGTPQKKDYFLCAETPGAARAW 122

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRN 121
           VSTLHA QLVLKAHKEAVNSLSGNGS KLGTVATVVAAANSTA ECSKEIEAAMQISLRN
Sbjct: 123 VSTLHATQLVLKAHKEAVNSLSGNGSTKLGTVATVVAAANSTASECSKEIEAAMQISLRN 182

Query: 122 ALGTMTNRITDGPMDDLSIMK 142
           ALG M NR TDGPMDDL+IMK
Sbjct: 183 ALGMMPNRTTDGPMDDLTIMK 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553844|ref|XP_003545261.1| PREDICTED: uncharacterized protein LOC100792926 [Glycine max]

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 129/141 (91%), Positives = 132/141 (93%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
           RRNEP+VKGTI FD NSTI ISPVNF+GLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW
Sbjct: 63  RRNEPSVKGTIIFDANSTITISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 122

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRN 121
           VSTLHA QLVLKAHKEAVNSLSGNGS KLGTVATVVAAANSTA ECSKEIEAAMQISLRN
Sbjct: 123 VSTLHATQLVLKAHKEAVNSLSGNGSTKLGTVATVVAAANSTALECSKEIEAAMQISLRN 182

Query: 122 ALGTMTNRITDGPMDDLSIMK 142
           ALG M NR TDGPMDDL+IMK
Sbjct: 183 ALGMMNNRTTDGPMDDLTIMK 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501455|ref|XP_003519540.1| PREDICTED: uncharacterized protein LOC100820315 [Glycine max]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 129/141 (91%), Positives = 132/141 (93%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
           RRNEP+VKGTI FD NSTI ISPVNF+GLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW
Sbjct: 63  RRNEPSVKGTIIFDANSTITISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 122

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRN 121
           VSTLHA QLVLKAHKEAVNSLSGNGS KLGTVATVVAAANSTA ECSKEIEAAMQISLRN
Sbjct: 123 VSTLHATQLVLKAHKEAVNSLSGNGSTKLGTVATVVAAANSTALECSKEIEAAMQISLRN 182

Query: 122 ALGTMTNRITDGPMDDLSIMK 142
           ALG M NR TDGPMDDL+IMK
Sbjct: 183 ALGMMNNRTTDGPMDDLTIMK 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558688|ref|XP_002520368.1| conserved hypothetical protein [Ricinus communis] gi|223540415|gb|EEF41984.1| conserved hypothetical protein [Ricinus communis]

 Score =  275 bits (702), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 127/142 (89%), Positives = 133/142 (93%)

Query: 1   TRRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
           TRRNEP +KGTI FD NSTI +SPVNF+GLPKYDGCCFYIGTPQKKDYFLCAETPGAARA
Sbjct: 65  TRRNEPAIKGTIIFDANSTITVSPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 124

Query: 61  WVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLR 120
           WV+TLHA QLVLKAHKEAVNSLSG GSAKLGTVATVVAAANSTA ECSKEIEAAMQISLR
Sbjct: 125 WVATLHATQLVLKAHKEAVNSLSGTGSAKLGTVATVVAAANSTALECSKEIEAAMQISLR 184

Query: 121 NALGTMTNRITDGPMDDLSIMK 142
           NALG + NRITDGPMDDL+IMK
Sbjct: 185 NALGMVNNRITDGPMDDLAIMK 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082584|ref|XP_002306753.1| predicted protein [Populus trichocarpa] gi|222856202|gb|EEE93749.1| predicted protein [Populus trichocarpa]

 Score =  274 bits (700), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 126/142 (88%), Positives = 133/142 (93%)

Query: 1   TRRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
           TRRNEP +KGTI FD NSTIA+SPVNFNGLPKYDGCCFYIGTPQ+KDYFLCAETPGAARA
Sbjct: 66  TRRNEPALKGTILFDANSTIAVSPVNFNGLPKYDGCCFYIGTPQRKDYFLCAETPGAARA 125

Query: 61  WVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLR 120
           WV+TLHA QLVLKAHKEAV+SLSGNGSAKLGTVATVVAAANSTA ECSKEIEAAMQISLR
Sbjct: 126 WVATLHATQLVLKAHKEAVDSLSGNGSAKLGTVATVVAAANSTALECSKEIEAAMQISLR 185

Query: 121 NALGTMTNRITDGPMDDLSIMK 142
           NALG M NR TDGPMDD +I+K
Sbjct: 186 NALGMMNNRTTDGPMDDKTILK 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446797|ref|XP_002283267.1| PREDICTED: uncharacterized protein LOC100254120 [Vitis vinifera] gi|302143523|emb|CBI22084.3| unnamed protein product [Vitis vinifera]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 124/141 (87%), Positives = 130/141 (92%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
           RRNE  VKGTI FD  STI +SPVNF+GLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW
Sbjct: 66  RRNEVAVKGTIIFDAYSTITLSPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 125

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRN 121
           VSTLHA QLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTA ECSKEIEAAMQIS+RN
Sbjct: 126 VSTLHATQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTALECSKEIEAAMQISMRN 185

Query: 122 ALGTMTNRITDGPMDDLSIMK 142
           ALG M N+ +DGPMDDL+IMK
Sbjct: 186 ALGVMMNKTSDGPMDDLTIMK 206

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502140|ref|XP_004161554.1| PREDICTED: uncharacterized protein LOC101223787 [Cucumis sativus]

 Score =  258 bits (658), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 119/141 (84%), Positives = 127/141 (90%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
           RRNE T+KG+I FD NS I +SPVNF+GLPKYDGCC YIGTPQK+DYFLCAETPGAARAW
Sbjct: 66  RRNEATIKGSIIFDANSNITVSPVNFHGLPKYDGCCIYIGTPQKQDYFLCAETPGAARAW 125

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRN 121
           VSTLHA QLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQE SKEIE AMQISLRN
Sbjct: 126 VSTLHATQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQESSKEIERAMQISLRN 185

Query: 122 ALGTMTNRITDGPMDDLSIMK 142
            LG + N+ TDG MDDL+IMK
Sbjct: 186 TLGIIANKATDGQMDDLAIMK 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460032|ref|XP_004147750.1| PREDICTED: uncharacterized protein LOC101215308 [Cucumis sativus]

 Score =  258 bits (658), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 119/141 (84%), Positives = 127/141 (90%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
           RRNE T+KG+I FD NS I +SPVNF+GLPKYDGCC YIGTPQK+DYFLCAETPGAARAW
Sbjct: 66  RRNEATIKGSIIFDANSNITVSPVNFHGLPKYDGCCIYIGTPQKQDYFLCAETPGAARAW 125

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRN 121
           VSTLHA QLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQE SKEIE AMQISLRN
Sbjct: 126 VSTLHATQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQESSKEIERAMQISLRN 185

Query: 122 ALGTMTNRITDGPMDDLSIMK 142
            LG + N+ TDG MDDL+IMK
Sbjct: 186 TLGIIANKATDGQMDDLAIMK 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066555|ref|XP_002302134.1| predicted protein [Populus trichocarpa] gi|222843860|gb|EEE81407.1| predicted protein [Populus trichocarpa]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/142 (88%), Positives = 130/142 (91%)

Query: 1   TRRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
           TRRNEP VKGTI FD NSTI  SPVNF+GLPKYDGCCFYIGTPQK DYFLCAETPGAARA
Sbjct: 66  TRRNEPAVKGTIIFDANSTITASPVNFHGLPKYDGCCFYIGTPQKNDYFLCAETPGAARA 125

Query: 61  WVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLR 120
           WV+TLHA QLVLKAHKEAV+SLSG+GSAKLGTVA VVAAANS AQECSKEIEAAMQISLR
Sbjct: 126 WVATLHATQLVLKAHKEAVDSLSGSGSAKLGTVAAVVAAANSIAQECSKEIEAAMQISLR 185

Query: 121 NALGTMTNRITDGPMDDLSIMK 142
           NALG M NRI DGPMDDL+IMK
Sbjct: 186 NALGMMNNRIIDGPMDDLTIMK 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42570991|ref|NP_973569.1| Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana] gi|330253358|gb|AEC08452.1| Pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana]

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/142 (83%), Positives = 129/142 (90%)

Query: 1   TRRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
           TRRNEPT+KGTI FDENSTI+ISPVNF GLPKY+GCC YIGTPQKKDYFLCAETPGAA+A
Sbjct: 66  TRRNEPTIKGTILFDENSTISISPVNFQGLPKYNGCCIYIGTPQKKDYFLCAETPGAAKA 125

Query: 61  WVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLR 120
           WV+TLHA QLVLKAHKEAV SLSG+GSA LGTVATVVAAANSTA ECS+EI+AAMQISLR
Sbjct: 126 WVTTLHATQLVLKAHKEAVESLSGSGSATLGTVATVVAAANSTALECSREIQAAMQISLR 185

Query: 121 NALGTMTNRITDGPMDDLSIMK 142
           NAL    N+  DGP+DDL+IMK
Sbjct: 186 NALKITPNKPIDGPLDDLTIMK 207

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2052831	504	SWAP70 [Arabidopsis thaliana (	1.0	0.281	0.739	1.1e-53

TAIR|locus:2052831 SWAP70 [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 105/142 (73%), Positives = 116/142 (81%)

Query:     1 TRRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
             TRRNEPT+KGTI FDENSTI+ISPVNF GLPKY+GCC YIGTPQKKDYFLCAETPGAA+A
Sbjct:    66 TRRNEPTIKGTILFDENSTISISPVNFQGLPKYNGCCIYIGTPQKKDYFLCAETPGAAKA 125

Query:    61 WVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGXXXXXXXXXXXXXQECSKEIEAAMQISLR 120
             WV+TLHA QLVLKAHKEAV SLSG+GSA LG              ECS+EI+AAMQISLR
Sbjct:   126 WVTTLHATQLVLKAHKEAVESLSGSGSATLGTVATVVAAANSTALECSREIQAAMQISLR 185

Query:   121 NALGTMTNRITDGPMDDLSIMK 142
             NAL    N+  DGP+DDL+IMK
Sbjct:   186 NALKITPNKPIDGPLDDLTIMK 207


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      142       129   0.00091  102 3  11 22  0.42    31
                                                     29  0.41    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  132 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.66u 0.09s 10.75t   Elapsed:  00:00:02
  Total cpu time:  10.66u 0.09s 10.75t   Elapsed:  00:00:02
  Start:  Tue May 21 03:26:26 2013   End:  Tue May 21 03:26:28 2013

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam00169	101	pfam00169, PH, PH domain	7e-05
smart00233	102	smart00233, PH, Pleckstrin homology domain	1e-04
cd01235	106	cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (als	2e-04
cd13266	106	cd13266, PH_Skap_family, Src kinase-associated pho	0.001
cd13381	106	cd13381, PH_Skap-hom_Skap2, Src kinase-associated	0.001

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 9   KGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
           KG+I       +   P + +G  K    CF I T  ++ + L AE+    + WV  + +A
Sbjct: 44  KGSIPLSG-CQVTKVPDSEDGKRKN---CFEIRTGDRETFLLQAESEEERKEWVKAIRSA 99

Query: 69  Q 69
            
Sbjct: 100 I 100

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 12/42 (28%), Positives = 15/42 (35%)

Query: 28  NGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69
           +        CF I T  +K   L AE+      WV  L  A 
Sbjct: 60  DPDSSKKPHCFEIKTSDRKTLLLQAESEEEREKWVEALRKAI 101

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|241268 cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 3  RNEPTVKGTITFDENSTIAISPVNFNGLPKY--DGCCFYIGTPQKKDYFLCAETPGAARA 60
          + +   KG I   E  ++        G PK    G  F + T  K+ Y+  A +  AA+ 
Sbjct: 39 KEDTKCKGVIDLQEVESVYP-DTPSIGAPKSPDPGAFFELKTN-KRVYYFLAPSAEAAQQ 96

Query: 61 WV 62
          W+
Sbjct: 97 WI 98

Sbf1 is a myotubularin-related pseudo-phosphatase. Both Sbf1 and myotubularin interact with the SET domains of Hrx and other epigenetic regulatory proteins, but Sbf1 lacks phosphatase activity due to several amino acid changes in its structurally preserved catalytic pocket. It contains pleckstrin (PH), GEF, and myotubularin homology domains that are thought to be responsible for signaling and growth control. Sbf1 functions as an inhibitor of cellular growth. The N-terminal GEF homology domain serves to inhibit the transforming effects of Sbf1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241420 cd13266, PH_Skap_family, Src kinase-associated phosphoprotein family Pleckstrin homology (PH) domain

 Score = 35.9 bits (83), Expect = 0.001
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWV 62
          CCF I  P K+ Y   A +P  AR WV
Sbjct: 69 CCFEISAPDKRVYQFTAASPKEAREWV 95

Skap adaptor proteins couple receptors to cytoskeletal rearrangements. Src kinase-associated phosphoprotein of 55 kDa (Skap55)/Src kinase-associated phosphoprotein 1 (Skap1), Skap2, and Skap-homology (Skap-hom) have an N-terminal coiled-coil conformation, a central PH domain and a C-terminal SH3 domain. Their PH domains bind 3'-phosphoinositides as well as directly affecting targets such as in Skap55 where it directly affecting integrin regulation by ADAP and NF-kappaB activation or in Skap-hom where the dimerization and PH domains comprise a 3'-phosphoinositide-gated molecular switch that controls ruffle formation. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241532 cd13381, PH_Skap-hom_Skap2, Src kinase-associated phosphoprotein homolog and Skap 2 Pleckstrin homology (PH) domain

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTL 65
          CCF I  P K+ Y   A +P  A  WV  +
Sbjct: 69 CCFEISAPDKRIYQFTAASPKEAEEWVQQI 98

Adaptor protein Skap-hom, a homolog of Skap55, which interacts with actin and with ADAP (adhesion and degranulation promoting adapter protein) undergoes tyrosine phosphorylation in response to plating of bone marrow-derived macrophages on fibronectin. Skap-hom has an N-terminal coiled-coil conformation that is involved in homodimer formation, a central PH domain and a C-terminal SH3 domain that associates with ADAP. The Skap-hom PH domain regulates intracellular targeting; its interaction with the DM domain inhibits Skap-hom actin-based ruffles in macrophages and its binding to 3'-phosphoinositides reverses this autoinhibition. The Skap-hom PH domain binds PI[3,4]P2 and PI[3,4,5]P3, but not to PI[3]P, PI[5]P, or PI[4,5]P2. Skap2 is a downstream target of Heat shock transcription factor 4 (HSF4) and functions in the regulation of actin reorganization during lens differentiation. It is thought that SKAP2 anchors the complex of tyrosine kinase adaptor protein 2 (NCK20/focal adhesion to fibroblast growth factor receptors at the lamellipodium in lens epithelial cells. Skap2 has an N-terminal coiled-coil conformation which interacts with the SH2 domain of NCK2, a central PH domain and a C-terminal SH3 domain that associates with ADAP (adhesion and degranulation promoting adapter protein)/FYB (the Fyn binding protein). Skap2 PH domain binds to membrane lipids. Skap adaptor proteins couple receptors to cytoskeletal rearrangements. Src kinase-associated phosphoprotein of 55 kDa (Skap55)/Src kinase-associated phosphoprotein 1 (Skap1), Skap2, and Skap-hom have an N-terminal coiled-coil conformation, a central PH domain and a C-terminal SH3 domain. Their PH domains bind 3'-phosphoinositides as well as directly affecting targets such as in Skap55 where it directly affecting integrin regulation by ADAP and NF-kappaB activation or in Skap-hom where the dimerization and PH domains comprise a 3'-phosphoinositide-gated molecular switch that controls ruffle formation. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	98.47
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	98.11
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	98.03
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	97.94
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	97.83
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	97.82
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	97.8
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	97.71
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	97.66
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	97.47
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	97.47
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	97.45
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	97.28
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	97.07
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	96.99
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	96.79
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	96.57
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	96.44
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	96.33
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	96.02
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	95.16
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	95.1
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	95.03
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	93.0
cd01248	115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	92.73
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	92.2
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	90.83
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	88.81
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	84.11
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	81.86
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	80.49

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=98.47  E-value=8.4e-07  Score=59.44  Aligned_cols=63  Identities=24%  Similarity=0.418  Sum_probs=46.3

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCC-Cc-ceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPK-YD-GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~k-yD-gCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      ..|..++|.|.++...+|.+...+. +.|+ .+ .+||-|-| .++-|||+|||+..++.|+..||.
T Consensus        35 ~~~~~~~g~I~L~~~~~v~~~~~~~-~~~~~~~~~~~f~i~t-~~r~~~~~a~s~~e~~~Wi~ai~~   99 (101)
T cd01235          35 FEDTAEKGCIDLAEVKSVNLAQPGM-GAPKHTSRKGFFDLKT-SKRTYNFLAENINEAQRWKEKIQQ   99 (101)
T ss_pred             CCCCccceEEEcceeEEEeecCCCC-CCCCCCCCceEEEEEe-CCceEEEECCCHHHHHHHHHHHHh
Confidence            3568899999999988887644332 3333 22 34555545 566899999999999999999986

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=98.11  E-value=2.1e-05  Score=49.55  Aligned_cols=64  Identities=28%  Similarity=0.478  Sum_probs=55.5

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            5 EPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         5 e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      +..+++.|.++.. +|.-.+..-.+..+-...||.|-++..+.|+|++||+...+.|+..|+.+.
T Consensus        40 ~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   40 DSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             ESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            5688999999998 777766665557777889999999999999999999999999999998764

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=98.03  E-value=3e-05  Score=54.63  Aligned_cols=63  Identities=16%  Similarity=0.350  Sum_probs=45.5

Q ss_pred             CCCCCcceeEEeecCc---eeeee-ccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENS---TIAIS-PVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~s---TvtiS-pvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..|..++|.|.++...   +|..+ |-...+   -..+||-|.|| +..|||+|||+...+.|+..|+.+.
T Consensus        34 ~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~---~~~~~F~i~t~-~Rty~l~a~s~~e~~~Wi~ai~~v~  100 (103)
T cd01251          34 PLDAFAKGEVFLGSQEDGYEVREGLPPGTQG---NHWYGVTLVTP-ERKFLFACETEQDRREWIAAFQNVL  100 (103)
T ss_pred             CCCcCcCcEEEeeccccceeEeccCCccccc---cccceEEEEeC-CeEEEEECCCHHHHHHHHHHHHHHh
Confidence            4678999999998654   23321 211112   12349999999 5599999999999999999997653

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=97.94  E-value=3.3e-05  Score=53.57  Aligned_cols=56  Identities=14%  Similarity=0.271  Sum_probs=44.9

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      +.|..|+|.|.++. .+++.+|.+       ..++|-|.||.+ -|+|+|||+...+.|+..|..
T Consensus        37 ~~d~~p~G~I~L~~-~~~~~~~~~-------~~~~F~i~t~~r-~y~l~A~s~~e~~~Wi~al~~   92 (95)
T cd01265          37 SQDAKPLGRVDLSG-AAFTYDPRE-------EKGRFEIHSNNE-VIALKASSDKQMNYWLQALQS   92 (95)
T ss_pred             CCcccccceEECCc-cEEEcCCCC-------CCCEEEEEcCCc-EEEEECCCHHHHHHHHHHHHh
Confidence            46889999999987 445554432       247999999876 699999999999999998864

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=97.83  E-value=4.2e-05  Score=49.58  Aligned_cols=34  Identities=21%  Similarity=0.526  Sum_probs=30.6

Q ss_pred             CcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050           33 YDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus        33 yDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      ...+||.|.||. +.|+|||||......|+..|+.
T Consensus        60 ~~~~~f~i~~~~-~~~~f~a~s~~~~~~Wi~al~~   93 (94)
T cd01250          60 DRRFCFEVISPT-KTWHFQADSEEERDDWISAIQE   93 (94)
T ss_pred             CCceEEEEEcCC-cEEEEECCCHHHHHHHHHHHhc
Confidence            357899999998 7899999999999999999874

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=97.82  E-value=9.6e-05  Score=49.87  Aligned_cols=59  Identities=25%  Similarity=0.414  Sum_probs=46.6

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .+|..++|+|.++.. +|...+ .    .+ ...||-|.+|..+.|||+|||+.....|+.-||.|
T Consensus        38 ~~~~~~~~~I~L~~~-~v~~~~-~----~~-k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          38 KQDEKAEGLIFLSGF-TIESAK-E----VK-KKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             CCCCccceEEEccCC-EEEEch-h----cC-CceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            467789999999976 443321 1    22 56799999998789999999999999999999864

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=97.80  E-value=9.1e-05  Score=51.99  Aligned_cols=62  Identities=18%  Similarity=0.208  Sum_probs=45.1

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlr   66 (142)
                      .++..++|+|.++..+.|..++. ..+....-..+|.|.||.+ -|||+|||+...+.||..|+
T Consensus        44 ~~~~k~~g~I~L~~~~~v~~~~~-~~~~~~~~~~~f~i~t~~r-~y~l~A~s~ee~~~Wi~~I~  105 (108)
T cd01266          44 SRKFKLEFVIDLESCSQVDPGLL-CTAGNCIFGYGFDIETIVR-DLYLVAKNEEEMTLWVNCIC  105 (108)
T ss_pred             CCCCccceEEECCccEEEccccc-ccccCcccceEEEEEeCCc-cEEEEECCHHHHHHHHHHHH
Confidence            45678999999998655433311 1122222347899998754 89999999999999999886

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=97.71  E-value=0.00015  Score=46.76  Aligned_cols=53  Identities=30%  Similarity=0.451  Sum_probs=43.2

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            7 TVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         7 ~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .++|.|.++.. +|...+.        +..||.|-+|..+.|+|+|||......|+..||.|
T Consensus        39 ~~~~~i~l~~~-~~~~~~~--------~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          39 KPRGTILLSGA-VISEDDS--------DDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA   91 (91)
T ss_pred             CceEEEEeceE-EEEECCC--------CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            78999999875 3444321        25799999999889999999999999999999864

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=97.66  E-value=0.00023  Score=49.50  Aligned_cols=61  Identities=16%  Similarity=0.279  Sum_probs=45.8

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      +|..+.|+|.++ +.+|..+|-.-.  ..-..+||.|.||.+ -|||+|||+.....|+.-|+..
T Consensus        37 ~~~~~~~~I~L~-~~~v~~~~~~~~--~~~~~~~F~I~t~~r-t~~~~A~s~~e~~~Wi~ai~~~   97 (100)
T cd01233          37 KDPVERGVINLS-TARVEHSEDQAA--MVKGPNTFAVCTKHR-GYLFQALSDKEMIDWLYALNPL   97 (100)
T ss_pred             CCccEeeEEEec-ccEEEEccchhh--hcCCCcEEEEECCCC-EEEEEcCCHHHHHHHHHHhhhh
Confidence            467899999998 556665543210  011357999999865 6999999999999999999763

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=97.47  E-value=0.0004  Score=50.53  Aligned_cols=56  Identities=23%  Similarity=0.309  Sum_probs=43.7

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHH
Q 043050            5 EPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (142)
Q Consensus         5 e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlr   66 (142)
                      |..++|+|.++.-.+|.-.. ..    +-..+||-|.||. ..|||+|||+...+.|+.-|-
T Consensus        46 ~~~p~G~IdL~~~~~V~~~~-~~----~~~~~~f~I~tp~-R~f~l~Aete~E~~~Wi~~l~  101 (104)
T cd01236          46 TTLPQGTIDMNQCTDVVDAE-AR----TGQKFSICILTPD-KEHFIKAETKEEISWWLNMLM  101 (104)
T ss_pred             CcccceEEEccceEEEeecc-cc----cCCccEEEEECCC-ceEEEEeCCHHHHHHHHHHHH
Confidence            67899999998877765322 11    2247899999995 499999999999999998763

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=97.47  E-value=0.0006  Score=41.26  Aligned_cols=56  Identities=29%  Similarity=0.516  Sum_probs=44.2

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050            6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus         6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      ..+++.|.++. ..|...+.+.     -.-+||.|-+++.+.|+|+++|+.....|+..|+.
T Consensus        40 ~~~~~~i~l~~-~~v~~~~~~~-----~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~   95 (96)
T cd00821          40 YKPKGSIPLSG-AEVEESPDDS-----GRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS   95 (96)
T ss_pred             CCCcceEEcCC-CEEEECCCcC-----CCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence            46777888777 5555544443     24589999999878999999999999999999875

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=97.45  E-value=0.00054  Score=48.48  Aligned_cols=61  Identities=16%  Similarity=0.275  Sum_probs=46.3

Q ss_pred             CCcceeEEeecCceeeeeccccCC-CCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050            6 PTVKGTITFDENSTIAISPVNFNG-LPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus         6 ~~~rg~I~fda~sTvtiSpvNfhg-~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      ..++|.|.+...+.|...+.-..+ -.--+.|||-|.|+. ..|||.|+|+...+.|+..|+.
T Consensus        44 ~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~-r~~yl~A~s~~er~~WI~ai~~  105 (106)
T cd01238          44 GSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDE-GTLYVFAPTEELRKRWIKALKQ  105 (106)
T ss_pred             cCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCC-CeEEEEcCCHHHHHHHHHHHHh
Confidence            479999999998777654433222 112357999999975 4799999999999999998874

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=97.28  E-value=0.00092  Score=46.51  Aligned_cols=52  Identities=19%  Similarity=0.390  Sum_probs=41.0

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHH
Q 043050            6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (142)
Q Consensus         6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlr   66 (142)
                      ..++|.|.+...   .|.+      .+.|.|+|-|.++..+.|+|.||+|.....|+..|.
T Consensus        38 ~~~~G~I~L~~~---~i~~------~~~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~   89 (91)
T cd01247          38 HGCRGSIFLKKA---IIAA------HEFDENRFDISVNENVVWYLRAENSQSRLLWMDSVV   89 (91)
T ss_pred             CCCcEEEECccc---EEEc------CCCCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHh
Confidence            457999988753   2222      245679999988777899999999999999998874

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=97.07  E-value=0.0033  Score=44.85  Aligned_cols=59  Identities=17%  Similarity=0.359  Sum_probs=43.4

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccc--------------------eeeEEeecChHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQK--------------------KDYFLCAETPGAARAWVS   63 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~k--------------------k~yfLcAETp~aAraWv~   63 (142)
                      .|..++|.|.++. .+|...+-+      -.-.||-|-+|..                    +-|||||||+.....|+.
T Consensus        35 ~~~~~~g~I~L~~-~~v~~~~~~------~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~  107 (125)
T cd01252          35 TDKEPRGIIPLEN-VSIREVEDP------SKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIK  107 (125)
T ss_pred             CCCCceEEEECCC-cEEEEcccC------CCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHH
Confidence            4678999999993 334443221      1346998877764                    567799999999999999


Q ss_pred             HHHHHH
Q 043050           64 TLHAAQ   69 (142)
Q Consensus        64 tlrAa~   69 (142)
                      .|+.+.
T Consensus       108 al~~~~  113 (125)
T cd01252         108 SIKASI  113 (125)
T ss_pred             HHHHHH
Confidence            998753

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>smart00233 PH Pleckstrin homology domain

Probab=96.99  E-value=0.0057  Score=37.14  Aligned_cols=59  Identities=29%  Similarity=0.448  Sum_probs=43.6

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..+.+.|.++.. .|...+-+-.   .-...||.|.++..+.|+|.++|+.....|+..|+.+
T Consensus        42 ~~~~~~i~l~~~-~v~~~~~~~~---~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~  100 (102)
T smart00233       42 YKPKGSIDLSGI-TVREAPDPDS---AKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKA  100 (102)
T ss_pred             CCCceEEECCcC-EEEeCCCCcc---CCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHh
Confidence            356677777776 5544433211   1235799999999889999999999999999999864

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=96.79  E-value=0.0077  Score=43.73  Aligned_cols=64  Identities=9%  Similarity=0.072  Sum_probs=48.7

Q ss_pred             CCCCCcceeEEeecCceeeeeccc------cCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVN------FNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvN------fhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      ..|+.++|+|.||..-.|...-.-      -..+.....++|-|-||.+ .|.|.++|....+.|+.-|.-
T Consensus        51 ~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R-~~~l~a~s~~~~~~Wi~~i~~  120 (121)
T cd01254          51 PSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNR-SLKLKCKSSRKLKQWMASIED  120 (121)
T ss_pred             CCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCc-EEEEEeCCHHHHHHHHHHHHh
Confidence            356789999999999888754321      0011134579999999988 599999999999999987753

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=96.57  E-value=0.0073  Score=44.14  Aligned_cols=59  Identities=20%  Similarity=0.226  Sum_probs=42.9

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            7 TVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         7 ~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      +++|+|.++.-+||-...--  ...+-.-.||-|.||.+ -|||+|||+...++|+.-|.-|
T Consensus        42 ~~~g~IdL~~~~sVk~~~~~--~~~~~~~~~Fei~tp~r-t~~l~A~se~e~e~WI~~i~~a  100 (101)
T cd01264          42 PDDCSIDLSKIRSVKAVAKK--RRDRSLPKAFEIFTADK-TYILKAKDEKNAEEWLQCLNIA  100 (101)
T ss_pred             CCCceEEcccceEEeecccc--ccccccCcEEEEEcCCc-eEEEEeCCHHHHHHHHHHHHhh
Confidence            34699999999976543100  00011247999999995 8999999999999999877543

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=96.44  E-value=0.011  Score=42.91  Aligned_cols=59  Identities=20%  Similarity=0.377  Sum_probs=41.3

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccc-eeeEEeecChHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~k-k~yfLcAETp~aAraWv~tlrA   67 (142)
                      ..|..|+|.|-+...   .|-|+  |-...-.-.||-|.+|.. --||+|+++ .....|+..|++
T Consensus        38 ~~~~~p~gli~l~~~---~V~~v--~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          38 PKKTKPIGLIDLSDA---YLYPV--HDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             CCCCCccceeecccc---EEEEc--cccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence            356778886655444   33343  221111238999999876 789999999 999999999986

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=96.33  E-value=0.018  Score=41.56  Aligned_cols=53  Identities=17%  Similarity=0.191  Sum_probs=43.4

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHH
Q 043050            6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTL   65 (142)
Q Consensus         6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tl   65 (142)
                      ..|+|+|.++.-.+|.-.|     +.++ +.||=|-||.. -|+|.|||....+.|+..|
T Consensus        46 ~~p~~vI~L~~c~~v~~~~-----d~k~-~~~f~i~t~dr-~f~l~aese~E~~~Wi~~i   98 (101)
T cd01257          46 SAPKRVIPLESCFNINKRA-----DAKH-RHLIALYTRDE-YFAVAAENEAEQDSWYQAL   98 (101)
T ss_pred             CCceEEEEccceEEEeecc-----cccc-CeEEEEEeCCc-eEEEEeCCHHHHHHHHHHH
Confidence            6799999999988776433     2332 58999999885 8999999999999999866

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=96.02  E-value=0.045  Score=33.26  Aligned_cols=33  Identities=27%  Similarity=0.569  Sum_probs=29.2

Q ss_pred             ceeEEecccc--ceeeEEeecChHHHHHHHHHHHH
Q 043050           35 GCCFYIGTPQ--KKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus        35 gCCfYIgt~~--kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      .-||.|-++.  ...|+|++||+..+..|+..|+-
T Consensus        64 ~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~   98 (99)
T cd00900          64 PNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQ   98 (99)
T ss_pred             CceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhc
Confidence            4599999886  88999999999999999998863

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=95.16  E-value=0.031  Score=38.13  Aligned_cols=33  Identities=21%  Similarity=0.483  Sum_probs=30.4

Q ss_pred             eeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050           36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus        36 CCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      -+|.|-++..+.|+|+|+++.....|+..|+++
T Consensus        72 ~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~~  104 (104)
T cd01253          72 HVFRLRLPDGAEFLFQAPDEEEMSSWVRALKSA  104 (104)
T ss_pred             eEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            699999999899999999999999999998763

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=95.10  E-value=0.087  Score=37.83  Aligned_cols=57  Identities=14%  Similarity=0.024  Sum_probs=42.6

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050            6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus         6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      ..++|.|-+.....|-.-.-...+    ...||=|.||.+ -||+.|||+...+.|+.-|+-
T Consensus        41 ~~~~g~I~L~~i~~ve~v~~~~~~----~~~~fqivt~~r-~~yi~a~s~~E~~~Wi~al~k   97 (98)
T cd01244          41 CKKSALIKLAAIKGTEPLSDKSFV----NVDIITIVCEDD-TMQLQFEAPVEATDWLNALEK   97 (98)
T ss_pred             CceeeeEEccceEEEEEcCCcccC----CCceEEEEeCCC-eEEEECCCHHHHHHHHHHHhc
Confidence            467888888877776533322111    246999999864 899999999999999998873

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=95.03  E-value=0.17  Score=35.34  Aligned_cols=34  Identities=21%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             cceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050           34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus        34 DgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .-++|.|-+++ +.|.|+|+|+..=+.|+..|..+
T Consensus        65 ~~~~F~I~~~~-rsf~l~A~s~eEk~~W~~ai~~~   98 (101)
T cd01219          65 RPHSFLVSGKQ-RCLELQARTQKEKNDWVQAIFSI   98 (101)
T ss_pred             cCceEEEecCC-cEEEEEcCCHHHHHHHHHHHHHH
Confidence            46899998888 69999999999999999999765

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=93.00  E-value=0.39  Score=34.73  Aligned_cols=57  Identities=18%  Similarity=0.202  Sum_probs=41.4

Q ss_pred             eecCceeeeeccccCCCCCCcceeEEeccc-cc-eeeEEeecChHHHHHHHHHHHHHHH
Q 043050           14 FDENSTIAISPVNFNGLPKYDGCCFYIGTP-QK-KDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus        14 fda~sTvtiSpvNfhg~~kyDgCCfYIgt~-~k-k~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      |.=-+.|.+|-+.+-...+-|-|||+|... +. ..|-|+|-|+..=+.|+..|+.+-+
T Consensus        38 y~~K~~i~~~~l~i~e~~~~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i~   96 (97)
T cd01222          38 YQFKAYIPCKNLMLVEHLPGEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAML   96 (97)
T ss_pred             eEEEEEEEecceEEecCCCCCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHhh
Confidence            344456667766555555556799999544 22 4788999999999999999987644

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain

Probab=92.73  E-value=0.26  Score=34.89  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=29.9

Q ss_pred             CCcceeEEecccc---ceeeEEeecChHHHHHHHHHHHH
Q 043050           32 KYDGCCFYIGTPQ---KKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus        32 kyDgCCfYIgt~~---kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      ....|||-|..-.   .+-+.|+|+++..|+.|+..|++
T Consensus        76 ~~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~  114 (115)
T cd01248          76 SLEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK  114 (115)
T ss_pred             CccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence            4678999985443   46799999999999999999975

Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=92.20  E-value=0.29  Score=34.96  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=28.7

Q ss_pred             eeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050           36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus        36 CCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .||-|-+|++ .|.|+|+|+..-..|+.+|..+
T Consensus        65 ~~F~I~~~~k-s~~l~A~s~~Ek~~Wi~~i~~a   96 (99)
T cd01220          65 HCFTIFGGQC-AITVAASTRAEKEKWLADLSKA   96 (99)
T ss_pred             eeEEEEcCCe-EEEEECCCHHHHHHHHHHHHHH
Confidence            6999998865 8999999999999999999775

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=90.83  E-value=0.59  Score=33.52  Aligned_cols=37  Identities=30%  Similarity=0.395  Sum_probs=29.3

Q ss_pred             CCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050           31 PKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus        31 ~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..-+.+.|+|-||++ .|+|-+||...-.+|+..|++|
T Consensus        76 ~~~~~~~~~i~T~~k-t~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   76 GEIHLKVFSIFTPTK-TFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             SS-SSEEEEEE-SS--EEEEEESSHHHHHHHHHHHHH-
T ss_pred             cCcCCCCcEEECCCc-EEEEEECCHHHHHHHHHHHHhC
Confidence            345678999988866 9999999999999999999765

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=88.81  E-value=1.3  Score=30.93  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=26.0

Q ss_pred             CCCcceeEEec----cccceeeEEeecChHHHHHHHHHHHH
Q 043050           31 PKYDGCCFYIG----TPQKKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus        31 ~kyDgCCfYIg----t~~kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      .+....||.|-    ++...++| +|||+..-+.|+.-||.
T Consensus        61 ~~~~~~~F~i~~~~~~~~~~r~f-~a~s~ee~~eWi~ai~~  100 (102)
T cd01241          61 ERPRPNTFIIRCLQWTTVIERTF-HVESPEEREEWIHAIQT  100 (102)
T ss_pred             cCCCcceEEEEeccCCcccCEEE-EeCCHHHHHHHHHHHHh
Confidence            34556799996    22223455 68999999999998875

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=84.11  E-value=2.9  Score=31.05  Aligned_cols=50  Identities=22%  Similarity=0.468  Sum_probs=39.7

Q ss_pred             ceeeeeccccCCCCCCcceeEEe--cccc--ceeeEEeecChHHHHHHHHHHHH
Q 043050           18 STIAISPVNFNGLPKYDGCCFYI--GTPQ--KKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus        18 sTvtiSpvNfhg~~kyDgCCfYI--gt~~--kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      +.|.+|-+.+--..+-|.|+|=|  .+|.  ...|-|-|-|+..=.+|+..||.
T Consensus        57 ~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~  110 (114)
T cd01232          57 SKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIRE  110 (114)
T ss_pred             cceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHH
Confidence            56667777666666678999976  6664  46788899999999999999985

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=81.86  E-value=2.6  Score=31.30  Aligned_cols=33  Identities=9%  Similarity=0.414  Sum_probs=29.6

Q ss_pred             eEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050           37 CFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus        37 CfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      =|.|-+|-.++|+|-|.+...+..||..|+.+.
T Consensus        79 VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~  111 (117)
T cd01230          79 VFRLRTADWREFLFQTSSLKELQSWIERINVVA  111 (117)
T ss_pred             EEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence            488888988999999999999999999998753

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=80.49  E-value=11  Score=27.49  Aligned_cols=32  Identities=25%  Similarity=0.470  Sum_probs=28.3

Q ss_pred             eeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050           36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus        36 CCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .+|-|-+|+| -+.+.|||+..=+.|+..|..|
T Consensus        66 n~f~I~~~~k-Sf~v~A~s~~eK~eWl~~i~~a   97 (104)
T cd01218          66 NGWIIKTPTK-SFAVYAATETEKREWMLHINKC   97 (104)
T ss_pred             ceEEEecCCe-EEEEEcCCHHHHHHHHHHHHHH
Confidence            7899999877 7888999999999999999654

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	5e-10
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	3e-09
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	1e-08
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	1e-07
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	1e-07
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	4e-07
2yry_A	122	Pleckstrin homology domain-containing family A mem	8e-07
2dkp_A	128	Pleckstrin homology domain-containing family A mem	1e-06
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	2e-06
2d9y_A	117	Pleckstrin homology domain-containing protein fami	2e-06
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	3e-06
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	4e-06
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	4e-06
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	4e-06
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	4e-06
2d9v_A	130	Pleckstrin homology domain-containing protein fami	5e-06
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	5e-06
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	5e-06
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	8e-06
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	2e-05
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	3e-05
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	3e-05
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	1e-04
3cxb_B	112	Pleckstrin homology domain-containing family M mem	1e-04
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	2e-04
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	3e-04
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	4e-04
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	5e-04
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	5e-04
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	7e-04

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 52.8 bits (127), Expect = 5e-10
 Identities = 14/68 (20%), Positives = 24/68 (35%)

Query: 1   TRRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
             R +   KG I   E   +A            D   F+     ++ Y  CA+   +A+ 
Sbjct: 42  DHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQ 101

Query: 61  WVSTLHAA 68
           WV  + + 
Sbjct: 102 WVDRIQSC 109

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 50.9 bits (122), Expect = 3e-09
 Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
                  G I       +     N NG    +   F I T  +  YFL A TP     W+
Sbjct: 54  AGAEDPLGAIHLRG-CVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWI 112

Query: 63  STLHAAQLVLKAHKEA 78
             +  A    K+   +
Sbjct: 113 KAIQMASRTGKSGPSS 128

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 1/66 (1%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
                  G I       +     N NG    +   F I T  +  YFL A TP     W+
Sbjct: 43  AGAEDPLGAIHLRG-CVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWI 101

Query: 63  STLHAA 68
             +  A
Sbjct: 102 KAIQMA 107

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
             +    KG I  DEN  +   P           C F +     K + + A      + W
Sbjct: 41  SEDLKDKKGDILLDENCCVESLPDK-----DGKKCLFLVKCF-DKTFEISASDKKKKQEW 94

Query: 62  VSTLHAAQLVLKAHK 76
           +  +H+   +LK   
Sbjct: 95  IQAIHSTIHLLKLGS 109

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 4/71 (5%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFNGLPKYDG----CCFYIGTPQKKDYFLCAETPGAA 58
           +    ++  +    +     +          DG    C   I     K   LCAE+    
Sbjct: 40  QTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDC 99

Query: 59  RAWVSTLHAAQ 69
            AW  TL  ++
Sbjct: 100 LAWKFTLQDSR 110

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 44.9 bits (106), Expect = 4e-07
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 29  GLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGS 87
                D   F +     + Y L A      + WVS L   Q+  + H EA+   +   S
Sbjct: 63  SPSDEDSHTFTVNAASGEQYKLRATDAKERQHWVSRL---QICTQHHTEAIGKNNSGPS 118

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 44.3 bits (105), Expect = 8e-07
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
              E ++ G+I        A+ P +           F       + YF  AE+P    AW
Sbjct: 56  DEKEESILGSIPLLSFRVAAVQPSDNISRK----HTFKAEHAGVRTYFFSAESPEEQEAW 111

Query: 62  VSTLHAA 68
           +  +  A
Sbjct: 112 IQAMGEA 118

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 44.0 bits (104), Expect = 1e-06
 Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 4/67 (5%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
              E  + G+I         ++  +           F    P  + Y+ C +T      W
Sbjct: 55  DEKEEGILGSILLPSFQIALLTSEDHINRK----YAFKAAHPNMRTYYFCTDTGKEMELW 110

Query: 62  VSTLHAA 68
           +  +  A
Sbjct: 111 MKAMLDA 117

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 4   NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVS 63
            +   KG    D       + +  +G       CF I  P K+ Y   A +P  A  WV 
Sbjct: 145 KDKQQKGEFAIDGYDVRMNNTLRKDGKKDC---CFEICAPDKRIYQFTAASPKDAEEWVQ 201

Query: 64  TLHAAQLVLK 73
            L   + +L+
Sbjct: 202 QL---KFILQ 208

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 42.8 bits (101), Expect = 2e-06
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
              E ++ G+I        A+ P +           F       + YF  AE+P    AW
Sbjct: 45  DEKEESILGSIPLLSFRVAAVQPSDNISRK----HTFKAEHAGVRTYFFSAESPEEQEAW 100

Query: 62  VSTLHAA 68
           +  +  A
Sbjct: 101 IQAMGEA 107

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 42.8 bits (101), Expect = 3e-06
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
            +  P     +   E S +           +    CF +  P  + ++LCA+T   A  W
Sbjct: 51  DQMSPEPIRILDLTECSAVQFDY------SQERVNCFCLVFP-FRTFYLCAKTGVEADEW 103

Query: 62  VSTLHAAQLVLKAHKEAVNSLSGN 85
           +  L   +  L   ++ +N   G 
Sbjct: 104 IKIL---RWKLSQIRKQLNQGEGT 124

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 9   KGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
           KG+I  D    +  +              F +    K  Y L A++      W++ L+  
Sbjct: 70  KGSIFLDSCMGVVQNNKVRR-------FAFELKMQDKSSYLLAADSEVEMEEWITILNKI 122

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 42.3 bits (100), Expect = 4e-06
 Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
           +++ + KG I    ++  +                F I T +++D+F  A       AWV
Sbjct: 39  KSDNSPKGMIPLKGSTLTSPCQDFGKR-----MFVFKITTTKQQDHFFQAAFLEERDAWV 93

Query: 63  STLHAAQLVLKAHKE 77
             ++ A   ++  + 
Sbjct: 94  RDINKAIKCIEGLEH 108

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
                 KGT      S      +  +   +    CF + +  ++ Y   A +P  AR WV
Sbjct: 41  EKSKQPKGTFLIKGYSVRMAPHLRRDSKKES---CFELTSQDRRTYEFTATSPAEARDWV 97

Query: 63  STLHAA 68
             +   
Sbjct: 98  DQISFL 103

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score = 42.6 bits (100), Expect = 4e-06
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 2/68 (2%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFNGLPKYD--GCCFYIGTPQKKDYFLCAETPGAARA 60
           + E    G  +   +   A+         K +  G  F + T     Y++ A +      
Sbjct: 55  KEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAE 114

Query: 61  WVSTLHAA 68
           W+  +   
Sbjct: 115 WIEAIKKL 122

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 42.3 bits (99), Expect = 5e-06
 Identities = 12/50 (24%), Positives = 16/50 (32%)

Query: 32  KYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNS 81
           +       +   +     LCAET   A AW + L  A          V S
Sbjct: 76  RSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTPAPAGATVPS 125

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 42.1 bits (99), Expect = 5e-06
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
              E +V G++     +     P    G        F    P  + Y L A+T    R W
Sbjct: 45  DSREESVLGSVLLPSYNIRPDGPGAPRGRR----FTFTAEHPGMRTYVLAADTLEDLRGW 100

Query: 62  VSTLHAA 68
           +  L  A
Sbjct: 101 LRALGRA 107

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 42.1 bits (99), Expect = 5e-06
 Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 2   RRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAW 61
              E      I   E   +     +   +       F I T  +  +++ A++P    +W
Sbjct: 47  SELEKEPLRVIPLKEVHKVQECKQSDIMMRDN---LFEIVTTSRT-FYVQADSPEEMHSW 102

Query: 62  VSTLHAAQLVLKAHKEAVNS 81
           +  +  A +  +    + +S
Sbjct: 103 IKAVSGAIVAQRGPGRSASS 122

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 42.2 bits (99), Expect = 8e-06
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 9   KGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
           KG    D       + +  +G       CF I  P K+ Y   A +P  A  WV  L   
Sbjct: 61  KGEFAIDGYDVRMNNTLRKDGKKDC---CFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 117

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 15/86 (17%)

Query: 4   NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVS 63
            E   KG I     ST+ +   N           F + T Q+  +    E       W+S
Sbjct: 44  KEMYSKGIIPLSAISTVRVQGDN----------KFEVVTTQRT-FVFRVEKEEERNDWIS 92

Query: 64  TLHAAQLVLKAHK-EAVNSLSGNGSA 88
            L      LK+    + +  SG  S 
Sbjct: 93  IL---LNALKSQSLTSQSQASGPSSG 115

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 39.8 bits (93), Expect = 3e-05
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 9/70 (12%)

Query: 4  NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVS 63
               KG+I       I +           D     +  P ++ +++ A      + W+ 
Sbjct: 36 VCKGSKGSIKM-AVCEIKVHSA--------DNTRMELIIPGEQHFYMKAVNAAERQRWLV 86

Query: 64 TLHAAQLVLK 73
           L +++  L 
Sbjct: 87 ALGSSKASLT 96

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 40.5 bits (94), Expect = 3e-05
 Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 1   TRRNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
            R  +   KG I   +   + I   +   +P  +   F +        ++ A +P +   
Sbjct: 53  GRAEKKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDANT-LYIFAPSPQSRDL 111

Query: 61  WVSTLHAAQ 69
           WV  L    
Sbjct: 112 WVKKLKEEI 120

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 5/65 (7%), Positives = 16/65 (24%), Gaps = 6/65 (9%)

Query: 4   NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVS 63
            +     +       T+ +     +     +   F +       Y   A+   + + W+ 
Sbjct: 43  EDVAALESQ-PLLGFTVTLVKDENS-----ESKVFQLLHKGMVFYVFKADDAHSTQRWID 96

Query: 64  TLHAA 68
                
Sbjct: 97  AFQEG 101

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 4/66 (6%)

Query: 3  RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
          R +     ++             N    P      F +    +    L AE+      W+
Sbjct: 38 RTDVIPLLSVNMGGEQCGGCRRANTTDRP----HAFQVILSDRPCLELSAESEAEMAEWM 93

Query: 63 STLHAA 68
            L  A
Sbjct: 94 QHLCQA 99

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 37.4 bits (87), Expect = 2e-04
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 19  TIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69
           +I +S   F+     +   F I TP  +   L A T  A   W+  L   +
Sbjct: 54  SIDLSSAVFDCKADAEEGIFEIKTP-SRVITLKAATKQAMLYWLQQLQMKR 103

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 14/102 (13%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
            +E  +KGT+       I  +                I    +  + L AE+P  A  W 
Sbjct: 97  DSEEKLKGTVEVRSAKEIIDNT--------NKENGIDIIMADRT-FHLIAESPEDASQWF 147

Query: 63  STLHAA-----QLVLKAHKEAVNSLSGNGSAKLGTVATVVAA 99
           S L        Q + + H E  N  +  G+  +G + +V A+
Sbjct: 148 SVLSQVHSSTDQEIREMHDEQANPQNAVGTLDVGLIDSVCAS 189

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 8/33 (24%), Positives = 15/33 (45%)

Query: 36  CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
             F +G    K+Y   A+      +W+  ++AA
Sbjct: 83  HVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAA 115

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 10/73 (13%), Positives = 17/73 (23%), Gaps = 11/73 (15%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQ-------KKDYFLCAETP 55
             +   +G +     +   I+              F I           +  Y L A + 
Sbjct: 42  EEDTKPQGCMYLPGCTIKEIATNPEEAGK----FVFEIIPASWDQNRMGQDSYVLMASSQ 97

Query: 56  GAARAWVSTLHAA 68
                WV  L   
Sbjct: 98  AEMEEWVKFLRRV 110

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 10  GTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
           G++     S ++I+         +   CF I    ++ YFL A      + WV  L+ A
Sbjct: 64  GSLQLTYISKVSIATPKQKPKTPF---CFVINALSQR-YFLQANDQKDLKDWVEALNQA 118

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 36.1 bits (83), Expect = 7e-04
 Identities = 5/32 (15%), Positives = 11/32 (34%)

Query: 37  CFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
            F +      +Y   A+       W+  + +A
Sbjct: 75  VFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	98.35
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	98.32
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	98.3
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	98.3
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	98.28
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	98.26
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	98.25
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	98.23
2yry_A	122	Pleckstrin homology domain-containing family A mem	98.22
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	98.21
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	98.21
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	98.21
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	98.2
2d9y_A	117	Pleckstrin homology domain-containing protein fami	98.2
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	98.15
2dkp_A	128	Pleckstrin homology domain-containing family A mem	98.15
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	98.13
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	98.09
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	98.08
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	98.07
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	98.05
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	98.0
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	97.96
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	97.94
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	97.94
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	97.89
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	97.89
2d9v_A	130	Pleckstrin homology domain-containing protein fami	97.88
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	97.8
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	97.77
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	97.75
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	97.71
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	97.64
3cxb_B	112	Pleckstrin homology domain-containing family M mem	97.63
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	97.61
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	97.59
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	97.52
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	97.51
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	97.48
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	97.41
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	97.34
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	97.29
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	97.28
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	97.22
1wi1_A	126	Calcium-dependent activator protein for secretion,	97.19
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	97.17
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	97.13
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	97.12
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	97.05
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	96.98
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	96.94
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	96.84
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	96.53
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	96.48
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	96.25
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	96.07
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	95.87
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	95.83
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	95.62
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	94.06
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	93.84
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	93.64
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	93.36
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	92.88
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	90.23
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	88.76
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	87.17
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	86.15
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	85.8
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	84.33
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	84.24
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	83.07
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	80.37

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=2.4e-06  Score=55.67  Aligned_cols=62  Identities=21%  Similarity=0.389  Sum_probs=50.0

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      .+|..++|.|.++....|...|-     .+...+||.|-||. +.|+|+|||+.....|+..|+.+..
T Consensus        42 ~~~~~~~g~i~L~~~~~v~~~~~-----~~~~~~~F~i~~~~-r~~~l~a~s~~e~~~Wi~ai~~~~~  103 (115)
T 2dn6_A           42 EDLKDKKGDILLDENCCVESLPD-----KDGKKCLFLVKCFD-KTFEISASDKKKKQEWIQAIHSTIH  103 (115)
T ss_dssp             TTCSSEEEEECCCTTCEEEEECC-----CTTCCSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCcEEEecCcEEEEECCC-----CCCCeeEEEEEeCC-CEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            35678999999998888877653     22345899998875 5799999999999999999987654

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.32  E-value=1.3e-06  Score=57.11  Aligned_cols=64  Identities=25%  Similarity=0.452  Sum_probs=49.9

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCC--CCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLP--KYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~--kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..|..++|.|.++....|...+. ..+.|  .-+.+||.|-|+. +.|+|+|||+...+.|+..|+.+
T Consensus        44 ~~~~~~~g~i~L~~~~~v~~~~~-~~~~~~~~~~~~~F~i~~~~-r~~~l~a~s~~e~~~Wi~al~~~  109 (117)
T 1v5u_A           44 RMDTECKGVIDLAEVEAVAPGTP-TIGAPKTVDEKAFFDVKTTR-RVYNFCAQDVPSAQQWVDRIQSC  109 (117)
T ss_dssp             SSCSSCCCEEEGGGEEEEECCCC-CTTSCSSSCTTTCEEEEESS-CEEEEECSSHHHHHHHHHHHHTT
T ss_pred             CCCCccceEEEccCcEEEeecCc-cccccccCCCCeEEEEECCC-ceEEEECCCHHHHHHHHHHHHHH
Confidence            45678999999998887765432 34544  3455899997765 58999999999999999999763

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=98.30  E-value=1.9e-06  Score=56.59  Aligned_cols=66  Identities=21%  Similarity=0.294  Sum_probs=48.3

Q ss_pred             CCCCCcceeEEeecCceeeeeccc---c--CCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVN---F--NGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvN---f--hg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..|..++|.|.+... +|.|....   .  ....+...+||.|-+|..+.|||+|||+.....|+..|+.|.
T Consensus        40 ~~~~~~~g~i~l~~~-~i~l~~~~~v~~v~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  110 (112)
T 3aj4_A           40 QTRQNIEDKVHMPMD-CINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSR  110 (112)
T ss_dssp             TTCCSEEEEEEHHHH-EEEEEEGGGCCSCCCSTTCCGGGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccccccc-ceeecccccccccCCCCCCCcCcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            345678888887654 34444322   1  122333468999999888899999999999999999998875

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=98.30  E-value=4.1e-06  Score=53.45  Aligned_cols=65  Identities=22%  Similarity=0.400  Sum_probs=49.7

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      ..|..++|.|.++..+ |.+.|..  ....-..+||.|-+|..+.|+|+|||+.....|+..|+.+..
T Consensus        41 ~~~~~~~g~i~L~~~~-v~~~~~~--~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i~  105 (108)
T 1u5d_A           41 EKSKQPKGTFLIKGYS-VRMAPHL--RRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLK  105 (108)
T ss_dssp             TTCSSCSEEEECTTCE-EEECGGG--CSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEecceE-EEeCCcc--ccccCCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3567899999998776 4444321  122234589999999878999999999999999999987653

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.28  E-value=1.7e-06  Score=57.86  Aligned_cols=65  Identities=15%  Similarity=0.244  Sum_probs=47.4

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCC--cceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKY--DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~ky--DgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .+..++|.|.++...-+.+.+....-..+.  ..+||.|-||.+..|+|+|||+...+.|+..|+.+
T Consensus        56 ~~~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~  122 (129)
T 1x1g_A           56 EENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL  122 (129)
T ss_dssp             CCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             cCCccceEEECcCCEEEEeCCCCCcccccCCCCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence            567899999998754333333211001111  46899999998778999999999999999999764

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=3.4e-06  Score=57.02  Aligned_cols=64  Identities=17%  Similarity=0.179  Sum_probs=50.0

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHHHHHHh
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAH   75 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~lVlkAH   75 (142)
                      ..|..++|.|.++....+..        ..-..+||.|-|| ...|+|+|||+.....|+..|+.+....+..
T Consensus        46 ~~~~~~~g~I~L~~~~~~~~--------~~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~  109 (119)
T 2dhk_A           46 AQDANPLDSIDLSSAVFDCK--------ADAEEGIFEIKTP-SRVITLKAATKQAMLYWLQQLQMKRWEFHNS  109 (119)
T ss_dssp             TTCCSCSEEEEGGGCEEEEC--------TTGGGCEEEEECS-SCCEEEECSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCcccccEEECCCCEEEec--------CCCCCCEEEEEeC-CcEEEEECCCHHHHHHHHHHHHHHHHHhcCC
Confidence            45678999999987766542        1224579999998 5689999999999999999999877555443

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.25  E-value=3.6e-06  Score=55.15  Aligned_cols=60  Identities=7%  Similarity=0.136  Sum_probs=48.6

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..|..++|.|.++....+...+      ..-..+||.|-++....|+|+|||+..+..|+..|+.+
T Consensus        42 ~~~~~~~~~i~L~~~~~~~~~~------~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a  101 (109)
T 1wgq_A           42 SEDVAALESQPLLGFTVTLVKD------ENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG  101 (109)
T ss_dssp             TTCSSCSEEEECSSEEEEECCC------SSCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCcCccCceEECCCCEEEECCC------CCCCCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence            4567899999998877665543      11235799999998888999999999999999999876

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.23  E-value=2.1e-06  Score=56.74  Aligned_cols=57  Identities=25%  Similarity=0.325  Sum_probs=46.6

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      ..|..++|.|.++....|...+          .+||.|-|+. +.|+|+|||....+.|+..|+.+..
T Consensus        43 ~~~~~~~g~i~l~~~~~v~~~~----------~~~F~i~~~~-r~~~l~a~s~~e~~~Wi~~l~~~~~   99 (115)
T 2cod_A           43 EKEMYSKGIIPLSAISTVRVQG----------DNKFEVVTTQ-RTFVFRVEKEEERNDWISILLNALK   99 (115)
T ss_dssp             SCCSSCCCEEETTTEEEEEEET----------TTEEEEEESS-CCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCCEEECCcceEEEeCC----------CCEEEEEeCC-cEEEEECCCHHHHHHHHHHHHHHHH
Confidence            4567899999998877665433          4899999775 5899999999999999999987654

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.22  E-value=4.9e-06  Score=54.90  Aligned_cols=63  Identities=22%  Similarity=0.415  Sum_probs=47.8

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..|..++|.|.++...-..+.|..    ..-..+||.|-++..+.|+|+|||......|+..|+.+.
T Consensus        57 ~~~~~~~g~i~L~~~~v~~~~~~~----~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  119 (122)
T 2yry_A           57 EKEESILGSIPLLSFRVAAVQPSD----NISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA  119 (122)
T ss_dssp             TTCCSCCEEEESTTCCCEECCTTC----SCSSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccEEEcCCCEEEEcCccc----cCCcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence            457789999999887522222321    122358999988888899999999999999999998753

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=3.8e-06  Score=56.44  Aligned_cols=55  Identities=25%  Similarity=0.413  Sum_probs=45.2

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHH
Q 043050            7 TVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus         7 ~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      .++|.|.++...   |.+.      .-+.+||.|-||..+.|+|+|||+.....|+..|+.+..
T Consensus        50 ~~~g~I~L~~~~---v~~~------~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~  104 (120)
T 2d9x_A           50 KPRGTLQLAGAV---ISPS------DEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQ  104 (120)
T ss_dssp             CCSEEEECTTCC---EECC------SSSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHH
T ss_pred             CccceEEcceEE---EEec------CCCCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            789999998853   3331      235699999999878999999999999999999987553

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=98.21  E-value=5.5e-06  Score=53.49  Aligned_cols=64  Identities=23%  Similarity=0.345  Sum_probs=45.5

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .|..++|.|.++....+.+.+. -.....-..+||.|-||....|+|+|||+.....|+..|+.+
T Consensus        44 ~~~~~~g~i~L~~~~v~~~~~~-~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~  107 (109)
T 2i5f_A           44 GAEDPLGAIHLRGCVVTSVESN-SNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA  107 (109)
T ss_dssp             SCSSCSEEEECTTCEEEEECC---------CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCCccEEEECCCCEEEEccCC-cccccCCCceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence            4678999999988432222211 000011256899999998878999999999999999999875

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=98.21  E-value=5.9e-06  Score=55.39  Aligned_cols=65  Identities=23%  Similarity=0.336  Sum_probs=47.3

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..|..++|.|.++..+.+.+.+. ......-..+||.|-||.+..|+|+|||......|+..|+.+
T Consensus        54 ~~~~~~~g~i~L~~~~v~~~~~~-~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~  118 (129)
T 1x05_A           54 AGAEDPLGAIHLRGCVVTSVESN-SNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA  118 (129)
T ss_dssp             SCCSSCSEEEECTTCEEEECCCC-CCSSSCSSCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCCcceeEEEccCCEEEEccCC-ccccccCCCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence            35778999999988543333221 000011257899999998878999999999999999999764

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=98.20  E-value=2.7e-06  Score=55.04  Aligned_cols=54  Identities=17%  Similarity=0.386  Sum_probs=44.0

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            7 TVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         7 ~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      .++|.|.+. ..+|.+.|.        +.+||-|-+|..+.|+|+|||+.....|+..|+.+.
T Consensus        39 ~~~g~i~L~-~~~v~~~~~--------~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~   92 (103)
T 3rcp_A           39 GSKGSIKMA-VCEIKVHSA--------DNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSK   92 (103)
T ss_dssp             CCSCEEEGG-GCEEECCTT--------CSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTTS
T ss_pred             CcccEEEee-eeEEEEcCC--------CCceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence            589999994 555554432        578999999978899999999999999999997653

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=5.9e-06  Score=53.98  Aligned_cols=62  Identities=23%  Similarity=0.423  Sum_probs=47.0

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..|..++|.|.++...-..+.|..    ..-...||.|-++..+.|+|+|||+.....|+..|+.+
T Consensus        46 ~~~~~~~g~i~L~~~~v~~~~~~~----~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~  107 (117)
T 2d9y_A           46 EKEESILGSIPLLSFRVAAVQPSD----NISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA  107 (117)
T ss_dssp             TTCCSCCEEEECSSCEEEECCTTT----TCCCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             CCCCCcCCEEEeCCeEEEEcCccc----cCCCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence            457789999999876532232322    12234799998888889999999999999999999765

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.15  E-value=6e-06  Score=58.75  Aligned_cols=60  Identities=23%  Similarity=0.413  Sum_probs=46.0

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccce-----------------------eeEEeecChHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKK-----------------------DYFLCAETPGAAR   59 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk-----------------------~yfLcAETp~aAr   59 (142)
                      ..|..++|.|.++..+-+.       ...+.+++||.|-+|.+.                       .|+|+|||+...+
T Consensus        41 ~~~~~p~G~I~L~~~~v~~-------~~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~  113 (130)
T 1v88_A           41 QKNGQWVGTVLLNACEIIE-------RPSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGR  113 (130)
T ss_dssp             SSSCCCCEEEECSSCEECC-------CCTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHH
T ss_pred             CCCCCceEEEEcCCCEEEE-------CCCCCCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHH
Confidence            3567899999998765321       223457899999887542                       2889999999999


Q ss_pred             HHHHHHHHHH
Q 043050           60 AWVSTLHAAQ   69 (142)
Q Consensus        60 aWv~tlrAa~   69 (142)
                      .|+..|+.+.
T Consensus       114 ~Wi~ai~~a~  123 (130)
T 1v88_A          114 CWMDALELAL  123 (130)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=98.15  E-value=6.5e-06  Score=54.71  Aligned_cols=63  Identities=19%  Similarity=0.390  Sum_probs=47.1

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..|..++|.|.++.. +|...+..-+   .-..+||.|-+|..+.|+|+|||+...+.|+..|+.+.
T Consensus        56 ~~~~~~~g~i~L~~~-~v~~~~~~~~---~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  118 (128)
T 2dkp_A           56 EKEEGILGSILLPSF-QIALLTSEDH---INRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAA  118 (128)
T ss_dssp             TTCCSEEEEECGGGS-EEEECCGGGC---CSSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCcccceEEEcCce-EEEEcCCccc---CCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            457789999999654 3443322111   12347999999988899999999999999999998764

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=98.13  E-value=8.4e-06  Score=59.18  Aligned_cols=63  Identities=17%  Similarity=0.258  Sum_probs=54.0

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..++|.|.++....|...+..-...+.....||-|.||.+ .|||+|||+...+.|+..||.+.
T Consensus        58 ~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~t~~r-t~~l~A~s~~e~~~Wi~aL~~~i  120 (164)
T 2lul_A           58 KYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDAN-TLYIFAPSPQSRDLWVKKLKEEI  120 (164)
T ss_dssp             CCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEEECSSC-EEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cccccEEEEeeeEEEEeccccccCcccccceeEEEecCCc-EEEEECCCHHHHHHHHHHHHHHH
Confidence            4679999999988888777766666777789999999976 79999999999999999998653

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=98.09  E-value=1.5e-05  Score=53.18  Aligned_cols=62  Identities=21%  Similarity=0.371  Sum_probs=49.3

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLV   71 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~lV   71 (142)
                      .+|..++|.|.++..+.|...+.      .-...||.|-||. +.|+|+|||+.....|+..|+.+..-
T Consensus        52 ~~~~~~~g~i~L~~~~~v~~~~~------~~~~~~F~i~~~~-r~~~l~a~s~~e~~~Wi~al~~~i~~  113 (126)
T 1fao_A           52 QMSPEPIRILDLTECSAVQFDYS------QERVNCFCLVFPF-RTFYLCAKTGVEADEWIKILRWKLSQ  113 (126)
T ss_dssp             TTCSSCSEEEEGGGCCEEEEECS------SSSSSEEEEEETT-EEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCceeEEEccceEEEEeccc------CCCCCEEEEEeCC-cEEEEECCCHHHHHHHHHHHHHHHHH
Confidence            45788999999998887766431      2234799999874 58999999999999999999876543

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.08  E-value=1.2e-05  Score=52.23  Aligned_cols=63  Identities=16%  Similarity=0.251  Sum_probs=48.2

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccc-------cceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTP-------QKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~-------~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..|..++|.|.++....+.+.|..    ..-...||-|-+|       ..+.|+|+|||+.....|+..|+.+.
T Consensus        42 ~~~~~~~g~i~L~~~~v~~~~~~~----~~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~  111 (118)
T 1v89_A           42 EEDTKPQGCMYLPGCTIKEIATNP----EEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA  111 (118)
T ss_dssp             SSCCSCSEEECSTTEEEEEECCCS----SCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEECCCCEEEEcCcCc----ccCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            456789999999876554454422    1223679999995       77789999999999999999998753

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.07  E-value=1.5e-05  Score=52.35  Aligned_cols=63  Identities=21%  Similarity=0.248  Sum_probs=49.9

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      .+|..++|.|.++..+.+...+.     ..-..+||.|-|+..+.|+|+|||+.....|+..|+.+..
T Consensus        39 ~~~~~~~g~i~L~~~~~~~~~~~-----~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~  101 (113)
T 1pls_A           39 KSDNSPKGMIPLKGSTLTSPCQD-----FGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIK  101 (113)
T ss_dssp             TTCSSCSEEEESSSCCEESSCCS-----SCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcceEEEcCCCEEEEecCC-----CCCCccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence            35678999999998876642221     1224579999999888999999999999999999987654

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=98.05  E-value=1.5e-05  Score=52.62  Aligned_cols=63  Identities=16%  Similarity=0.296  Sum_probs=49.2

Q ss_pred             CCCCCcceeEEeecCceeeeecc-ccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPV-NFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpv-Nfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      ..|..++|.|.++....|...+. ...    -..+||.|-|+. +.|+|+|||....+.|+..|+.+..
T Consensus        48 ~~~~~~~g~i~l~~~~~v~~~~~~~~~----~~~~~F~i~~~~-r~~~l~a~s~~e~~~W~~al~~~i~  111 (125)
T 1eaz_A           48 ELEKEPLRVIPLKEVHKVQECKQSDIM----MRDNLFEIVTTS-RTFYVQADSPEEMHSWIKAVSGAIV  111 (125)
T ss_dssp             TTCSSCSEEEEGGGCCEEEECTTHHHH----TCSSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCcceeEEEcccceEEeeccccccC----CcCCEEEEEeCC-cEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            45678999999999887766432 111    235799999875 4899999999999999999987654

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=98.00  E-value=2.7e-05  Score=51.36  Aligned_cols=63  Identities=25%  Similarity=0.412  Sum_probs=47.3

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..|..++|.|.++..+   |.+..-. ...-...||.|.++..+.|+|+|||......|+..|+.+.
T Consensus        46 ~~~~~~~g~i~l~~~~---v~~~~~~-~~~~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~  108 (123)
T 1upq_A           46 SREESVLGSVLLPSYN---IRPDGPG-APRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS  108 (123)
T ss_dssp             TTCCSCCEEEEGGGCE---EEECCSS-CTTSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCcccceEEECCCCE---EEECCCC-ccCCCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHH
Confidence            4567899999987643   3333211 2223468999999988899999999999999999998754

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.96  E-value=1.2e-05  Score=55.42  Aligned_cols=57  Identities=21%  Similarity=0.376  Sum_probs=46.6

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            5 EPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         5 e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      +..++|+|.++....+...       ++-...||.|-|+..+.|||+|||......|+..|+.+
T Consensus        66 ~~~~~g~I~L~~~~~~~~~-------~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~a  122 (150)
T 1wg7_A           66 SKEPKGSIFLDSCMGVVQN-------NKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKI  122 (150)
T ss_dssp             SSCCSEEECTTTCCEECCC-------CSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCcCcEEecccCEEEecC-------CCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence            5679999999886555322       23456899999998779999999999999999999874

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=97.94  E-value=2.5e-05  Score=54.18  Aligned_cols=64  Identities=25%  Similarity=0.457  Sum_probs=48.0

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..|..++|.|.++..+ |...|...  ...-..+||.|-||..+.|+|+|||......|+..|+.+.
T Consensus        55 ~~~~~~~g~i~L~~~~-v~~~~~~~--~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i  118 (148)
T 1u5f_A           55 DKDKQQKGEFAIDGYD-VRMNNTLR--KDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  118 (148)
T ss_dssp             TTCSSCSEEEECTTCE-EEECTTSC--SSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CCCcccceEEEcCCcE-EEECCCcc--cCCCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            4567899999998774 43332111  1112358999999987899999999999999999997754

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.94  E-value=3e-05  Score=54.71  Aligned_cols=61  Identities=23%  Similarity=0.397  Sum_probs=47.3

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .+..+.|.|.++..++|...+..-.   .....||.|-||.+ .|||+|||+...+.||.-|+.+
T Consensus        58 ~~~~~~G~I~L~~~~~V~~~~~~~~---~~~~~~F~i~t~~r-~y~l~A~s~~e~~~Wi~al~~a  118 (126)
T 1v5p_A           58 VGAGAVGSLQLTYISKVSIATPKQK---PKTPFCFVINALSQ-RYFLQANDQKDLKDWVEALNQA  118 (126)
T ss_dssp             TTCCCSEEEETTTCCEEEECCTTTS---CSCSSEEEEECSSC-EEEEECSSHHHHHHHHHHHHHT
T ss_pred             CCceeeEEEECCCccEEecCCcccC---CCCCEEEEEECCCE-EEEEECCCHHHHHHHHHHHHHH
Confidence            4678999999988778776553322   23457998877765 7999999999999999999854

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=97.89  E-value=2.2e-05  Score=53.57  Aligned_cols=37  Identities=16%  Similarity=0.281  Sum_probs=33.4

Q ss_pred             CcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050           33 YDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus        33 yDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      .+.+||.|-||..+.|+|+|||+.....|+..|+.+.
T Consensus        87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i  123 (128)
T 2rlo_A           87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQI  123 (128)
T ss_dssp             CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            5789999999987899999999999999999998754

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=97.89  E-value=5e-05  Score=50.93  Aligned_cols=65  Identities=20%  Similarity=0.336  Sum_probs=47.4

Q ss_pred             CCcceeEEeecCce--eeeeccccCCCCCCcceeEEecc--ccc-----------------eeeEEeecChHHHHHHHHH
Q 043050            6 PTVKGTITFDENST--IAISPVNFNGLPKYDGCCFYIGT--PQK-----------------KDYFLCAETPGAARAWVST   64 (142)
Q Consensus         6 ~~~rg~I~fda~sT--vtiSpvNfhg~~kyDgCCfYIgt--~~k-----------------k~yfLcAETp~aAraWv~t   64 (142)
                      ..|+|.|.++..+.  |...|-...+    ...||-|-+  |.+                 ..|||+|||+.....|+..
T Consensus        47 ~~p~g~I~L~~~~~~~v~~~~~~~~~----~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~a  122 (134)
T 2y7b_A           47 KNPIGRINLANCTSRQIEPANREFCA----RRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQK  122 (134)
T ss_dssp             SCCSEEEEGGGBCSSSCEECCTTTCC----CTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHH
T ss_pred             cCceEEEEhhhCccccccccchhhcc----CCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHH
Confidence            68899999988654  4333322222    235999988  442                 3599999999999999999


Q ss_pred             HHHHHHHHHH
Q 043050           65 LHAAQLVLKA   74 (142)
Q Consensus        65 lrAa~lVlkA   74 (142)
                      |+.+...+++
T Consensus       123 l~~~i~~~~~  132 (134)
T 2y7b_A          123 LNQVLVDIRL  132 (134)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhc
Confidence            9988766653

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.88  E-value=5.4e-05  Score=52.10  Aligned_cols=65  Identities=20%  Similarity=0.248  Sum_probs=45.3

Q ss_pred             CCCCcceeEEeecCc-eeeee----ccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENS-TIAIS----PVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         4 ~e~~~rg~I~fda~s-TvtiS----pvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      .|..++|.|.++..- .|.+.    .+.. .+.+.+.+||.|-|+..+.|||+|||+...+.|+..|+.+.
T Consensus        44 ~~~~~~g~i~l~~~~~~i~~~~~~~~v~~-~~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~  113 (130)
T 2d9v_A           44 TAQDEEDRVVIHFNVRDIKVGQECQDVQP-PEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEAN  113 (130)
T ss_dssp             STTSEEEEEECTTTEEEEEEGGGCSSCCC-CSSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCcCceEecccceeEEeccccccccCC-CCCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            456788988765321 22221    1211 11234568999999876789999999999999999998765

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.80  E-value=4.8e-05  Score=55.86  Aligned_cols=60  Identities=8%  Similarity=0.154  Sum_probs=46.1

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..|..+.|.|.++..+.++..+.     .+...+||.|-||.+ .|+|||||+.....|+.-|+..
T Consensus        52 ~~d~~~~g~I~L~~~~~~~~~~~-----~~~~~~~F~I~t~~r-~~~f~A~s~ee~~eWi~aI~~v  111 (149)
T 1x1f_A           52 KKSIIYVDKLDIVDLTCLTEQNS-----TEKNCAKFTLVLPKE-EVQLKTENTESGEEWRGFILTV  111 (149)
T ss_dssp             SSCSSCSEECCCSSCCEEEECCC-----TTSCCCEEEEECSSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCccccCcEEECCCceEEeeccC-----CCCcCcEEEEEcCCC-EEEEEcCCHHHHHHHHHHHHHH
Confidence            45778889999988876643211     122468999999865 8999999999999999999754

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=97.77  E-value=0.00011  Score=48.28  Aligned_cols=60  Identities=18%  Similarity=0.385  Sum_probs=45.5

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccc---------------------eeeEEeecChHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQK---------------------KDYFLCAETPGAARAW   61 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~k---------------------k~yfLcAETp~aAraW   61 (142)
                      ..|..++|.|.++..+.+.+.+       .-...||-|-+|..                     +.|+|+|||+...+.|
T Consensus        39 ~~~~~~~g~i~L~~~~v~~~~~-------~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~W  111 (127)
T 1fgy_A           39 TTDKEPRGIIPLENLSIREVLD-------PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEW  111 (127)
T ss_dssp             TTCSSCSEEEECTTCEEEEECC-------SSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHH
T ss_pred             CCCCCcceEEECCceEEEEccC-------CCCCceEEEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHH
Confidence            3567899999999764333221       23457999988753                     4799999999999999


Q ss_pred             HHHHHHHH
Q 043050           62 VSTLHAAQ   69 (142)
Q Consensus        62 v~tlrAa~   69 (142)
                      +..|+.+.
T Consensus       112 i~al~~~i  119 (127)
T 1fgy_A          112 MKSIKASI  119 (127)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998754

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=97.75  E-value=9.2e-05  Score=56.24  Aligned_cols=64  Identities=25%  Similarity=0.449  Sum_probs=49.2

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..+..++|.|.++..+.+...+.  . ...-..+||.|-||..+.|+|+|||+..+..|+..|+.+.
T Consensus       144 ~~~~~p~g~I~L~~~~~v~~~~~--~-~~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai  207 (211)
T 1u5e_A          144 DKDKQQKGEFAIDGYDVRMNNTL--R-KDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  207 (211)
T ss_dssp             TTCSSCSEEEECTTCEEEECGGG--C-SSTTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCccceEEEEeCCcEEEEcCCc--c-ccCCCCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            45678999999988877643211  1 1112358999999988899999999999999999998754

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=97.71  E-value=0.00018  Score=54.06  Aligned_cols=75  Identities=20%  Similarity=0.317  Sum_probs=52.9

Q ss_pred             CCCCCcceeEEeecCceeeeeccc----cCCCCCCcceeEEeccccce-----eeEEeecChHHHHHHHHHHHHHH---H
Q 043050            3 RNEPTVKGTITFDENSTIAISPVN----FNGLPKYDGCCFYIGTPQKK-----DYFLCAETPGAARAWVSTLHAAQ---L   70 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvN----fhg~~kyDgCCfYIgt~~kk-----~yfLcAETp~aAraWv~tlrAa~---l   70 (142)
                      ..|..++|.|.+...+.+.+.+..    ..+.|  ..-||.|-+|...     -|||||||....+.|+.-||.|.   .
T Consensus       202 ~~~~~~~~~i~l~~l~~~~v~~~~~~~~~~~~~--~~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~g~~  279 (291)
T 3tca_A          202 GKTKTSRDLACFIQFENVNIYYGIQCKMKYKAP--TDHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAKYGKT  279 (291)
T ss_dssp             TCCSSTTTCEEEEEGGGCEEEEECSHHHHHCCS--SSCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHHHTHH
T ss_pred             CccccccCceeeccceeEEEEecCccccccCCC--CCeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHhcchH
Confidence            356788999988776666554332    11111  1249999888643     49999999999999999999863   4


Q ss_pred             HHHHhhhHh
Q 043050           71 VLKAHKEAV   79 (142)
Q Consensus        71 VlkAHkeAv   79 (142)
                      .++-|.+|+
T Consensus       280 l~~ny~~~~  288 (291)
T 3tca_A          280 LYDNYQRAV  288 (291)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            566777764

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=97.64  E-value=4e-05  Score=51.24  Aligned_cols=64  Identities=13%  Similarity=0.149  Sum_probs=43.1

Q ss_pred             CCCCcceeEEeecCcee--eeeccccCCCCCCcceeEEeccc---cceeeEEeecChHHHHHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTI--AISPVNFNGLPKYDGCCFYIGTP---QKKDYFLCAETPGAARAWVSTLHAAQLVL   72 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTv--tiSpvNfhg~~kyDgCCfYIgt~---~kk~yfLcAETp~aAraWv~tlrAa~lVl   72 (142)
                      .+..++|.|.++....+  .+.+.     ..-..+||.|-+|   ..+.|+|+|||+.....|+..|+.+..-+
T Consensus        44 ~~~~~~g~i~L~~~~~~~~~~~~~-----~~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~  112 (125)
T 1unq_A           44 PQDVDQREAPLNNFSVAQCQLMKT-----ERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGL  112 (125)
T ss_dssp             CCSHHHHTSCSEEEECTTCEEEEE-----CSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCceeEccceeEEeeeeccc-----ccCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence            34456777766644322  11221     1234589999874   45689999999999999999998765433

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=97.63  E-value=0.00026  Score=47.99  Aligned_cols=63  Identities=14%  Similarity=0.120  Sum_probs=43.4

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      +.|..+.|.|.+...+...+.+.+-    .-.-.||.|-++..+.|+|+|||+..+..|+.-|+.+.
T Consensus        38 ~~~~~p~~~i~l~~~~~~~~~~~~~----~~r~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~  100 (112)
T 3cxb_B           38 RTDVIPLLSVNMGGEQCGGCRRANT----TDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAV  100 (112)
T ss_dssp             SSCCSCSEEEETTC-CEEEEEECCC----SSCTTEEEEEETTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCccceEEecCCEEEeeeccCC----CCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence            3566777877665443321222221    12235999998988899999999999999999997643

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=97.61  E-value=7.3e-05  Score=47.85  Aligned_cols=53  Identities=23%  Similarity=0.583  Sum_probs=39.7

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..++|.|.+...   .+.|.      .-+.+||-|.||.+ .|+|+|||+.....|+..|+.|
T Consensus        40 ~~~~~~i~l~~~---~~~~~------~~~~~~F~i~~~~r-~~~l~A~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           40 YGCRGSICLSKA---VITPH------DFDECRFDISVNDS-VWYLRAQDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             TCCSEEEETTTC---EEEEC------SSCSSEEEEEETTE-EEEEECCSSCCTHHHHHHHHHH
T ss_pred             ccceeeEeccee---eeecC------cccceeEEEEeCCe-EEEEECCCHHHHHHHHHHHHhh
Confidence            457788877543   23322      23568999998865 7999999999999999988764

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=97.59  E-value=0.00023  Score=50.31  Aligned_cols=64  Identities=9%  Similarity=0.161  Sum_probs=45.1

Q ss_pred             CCCCcceeEEeecCceeeeeccccC---CCCCCcceeEEeccccc------eeeEEeecChHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFN---GLPKYDGCCFYIGTPQK------KDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfh---g~~kyDgCCfYIgt~~k------k~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .|..|+|.|.++ ..+|...+.+-.   +...-+++||.|-+++.      ..|+|.|||+..+..|+..||.+
T Consensus        44 ~d~~P~gsI~L~-~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~  116 (120)
T 4a6h_A           44 KDLVPVMSLALS-ECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKIL  116 (120)
T ss_dssp             TCCSCSEEEEGG-GEEEEEECCCCC---------CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCCCceEEEECC-CCEEEEcccccccccccccCCCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHH
Confidence            477899999995 555555332211   00112678999977764      49999999999999999999864

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.52  E-value=0.00046  Score=45.35  Aligned_cols=56  Identities=13%  Similarity=0.073  Sum_probs=40.9

Q ss_pred             CcceeEEeecCc-eeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            7 TVKGTITFDENS-TIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         7 ~~rg~I~fda~s-TvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .++|.|.++-.. +|...|-      .-...||-|-||..+.|+|+|||......|+..|+.+
T Consensus        43 ~~~~~~~i~l~~~~v~~~~~------~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~   99 (107)
T 2cof_A           43 SKVAQQPLSLVGCEVVPDPS------PDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSE   99 (107)
T ss_dssp             CSEEEEEECTTTCEEECCCB------TTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCCCeeEEeccceEEEECCC------CCCCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence            456666666443 2443321      2345899999987778999999999999999999754

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=97.51  E-value=0.00011  Score=53.96  Aligned_cols=65  Identities=12%  Similarity=0.212  Sum_probs=46.1

Q ss_pred             CCCCcceeEEeecCceeeee---ccccC-------CCCC--Ccc--------eeEEeccccceeeEEeecChHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAIS---PVNFN-------GLPK--YDG--------CCFYIGTPQKKDYFLCAETPGAARAWVS   63 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiS---pvNfh-------g~~k--yDg--------CCfYIgt~~kk~yfLcAETp~aAraWv~   63 (142)
                      .|..++|.|.++..+.|...   +-+-.       |.++  -+|        .||-|.||.+ .|||+|||+...+.|+.
T Consensus        47 ~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~r-t~yl~A~s~~E~~eWi~  125 (169)
T 1btk_A           47 RRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEG-PLYVFSPTEELRKRWIH  125 (169)
T ss_dssp             EEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEEEEEETTC-CEEEEESCHHHHHHHHH
T ss_pred             CCCceeeEEECcceEEEEeccCCCCcchhcccccccCcccccccccccccccccEEEEeCCc-eEEEEcCCHHHHHHHHH
Confidence            45689999999987766533   11110       1111  112        7999999874 89999999999999999


Q ss_pred             HHHHHH
Q 043050           64 TLHAAQ   69 (142)
Q Consensus        64 tlrAa~   69 (142)
                      .|+.+.
T Consensus       126 aI~~~i  131 (169)
T 1btk_A          126 QLKNVI  131 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=97.48  E-value=0.00055  Score=47.52  Aligned_cols=61  Identities=13%  Similarity=0.187  Sum_probs=45.0

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      .+..|.|.|.++. .+|...+     +..-..+||-|-||....|+|.|||+.....|+.-|+.+..
T Consensus        64 ~~~~p~g~I~L~~-~~v~~~~-----~~~kr~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~  124 (129)
T 2p0d_A           64 AGSRPESSVDLRG-AALAHGR-----HLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIE  124 (129)
T ss_dssp             ---CCSEEEECTT-CEEEECT-----TSCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCccEEEeCC-cEEEECC-----CCCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3568999999974 4454321     11223489999999988999999999999999999987543

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=97.41  E-value=0.00046  Score=52.40  Aligned_cols=58  Identities=24%  Similarity=0.349  Sum_probs=46.0

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      .|..++|.|.++....|.-.  .      -..+||-|.||. +.|+|+|||...+..|+..|+.+..
T Consensus        98 ~~~~~~g~I~L~~~~~v~~~--~------~k~~~F~I~t~~-r~~~l~A~s~~e~~~Wv~aL~~~i~  155 (228)
T 3tfm_A           98 SEEKLKGTVEVRSAKEIIDN--T------NKENGIDIIMAD-RTFHLIAESPEDASQWFSVLSQVHS  155 (228)
T ss_dssp             TCCSEEEEEEGGGCSEEEEE--T------TTTSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CCcceeEEEEcCCCEEeccC--C------CCCcEEEEEcCC-cEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            45689999999987765422  1      235899998875 5899999999999999999987553

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=97.34  E-value=0.00044  Score=44.23  Aligned_cols=34  Identities=15%  Similarity=0.419  Sum_probs=31.2

Q ss_pred             ceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050           35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus        35 gCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .+||-|-|+....|+|+|||+.....|+..|++|
T Consensus        73 ~~~F~i~~~~~~~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           73 KHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             SSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             ccEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            4799999998889999999999999999999864

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=97.29  E-value=0.00059  Score=48.08  Aligned_cols=58  Identities=19%  Similarity=0.257  Sum_probs=37.9

Q ss_pred             CCcceeEEeecCce-eeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            6 PTVKGTITFDENST-IAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         6 ~~~rg~I~fda~sT-vtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..++|.|.++.... +.+.+..     .-...||.|-||. +.|+|+|||......|+..|+.+.
T Consensus        52 ~~~~g~i~l~~~~~~~~~~~~~-----~~~~~~F~I~t~~-r~~~l~A~s~~e~~~Wi~ai~~~~  110 (168)
T 2j59_M           52 TPSEEEQPISVNACLIDISYSE-----TKRKNVFRLTTSD-CECLFQAEDRDDMLAWIKTIQESS  110 (168)
T ss_dssp             -------CEECSSCEEEECSSS-----CSCSSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             cccCCceEecccceEEEecccc-----CCCCCEEEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHH
Confidence            46788888877543 3344321     2234799999998 579999999999999999997653

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=97.28  E-value=0.00059  Score=56.31  Aligned_cols=63  Identities=19%  Similarity=0.338  Sum_probs=46.8

Q ss_pred             CCCCCcceeEEeecCcee-ee---eccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTI-AI---SPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTv-ti---SpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..|..++|.|.+...+.+ .+   .|....+.  ...+||-|-||. +.|||+|||+...+.|+..|+.+
T Consensus       304 ~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~--~~~~~F~I~t~~-rty~l~A~s~~e~~~Wi~aL~~~  370 (386)
T 3lju_X          304 PLDAFARGEVFIGSKESGYTVLHGFPPSTQGH--HWPHGITIVTPD-RKFLFACETESDQREWVAAFQKA  370 (386)
T ss_dssp             TTCSBCSEEEECCCGGGTCEEEESCCTTCCSC--CSCEEEEEECSS-CEEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCCcccceEEEeecceeeeeecccCCcccccc--CCCcEEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Confidence            356789999999766554 22   33332222  115999999996 59999999999999999999864

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.22  E-value=0.00097  Score=46.69  Aligned_cols=60  Identities=17%  Similarity=0.359  Sum_probs=45.0

Q ss_pred             CCCCCcceeEEeecCceeee-eccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAI-SPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvti-SpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..|.++.|.|.+... +|+. .|.    +..-..-||=|-++.+ -|||||||+..+..|+..|+.|
T Consensus        44 ~~d~~p~g~I~L~g~-~V~~~~~~----~~~~~~~~Fki~~~~~-~y~f~A~s~e~~~~Wl~al~~A  104 (112)
T 2coc_A           44 SQDGRLPRTIPLPSC-KLSVPDPE----ERLDSGHVWKLQWAKQ-SWYLSASSAELQQQWLETLSTA  104 (112)
T ss_dssp             TTCSSSCSEECGGGC-EEECCCSS----SCCSSSEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHH
T ss_pred             CCccCcceEEEcCCC-EEEecCcc----cccCCCCEEEEecCCe-EEEEEcCCHHHHHHHHHHHHHH
Confidence            567889999999877 4443 231    2222456999987765 6999999999999999988764

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.19  E-value=0.00059  Score=50.53  Aligned_cols=70  Identities=14%  Similarity=0.194  Sum_probs=52.2

Q ss_pred             CCCCCCcceeEEeecCceeee-eccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHHHHHHhhhH
Q 043050            2 RRNEPTVKGTITFDENSTIAI-SPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEA   78 (142)
Q Consensus         2 ~r~e~~~rg~I~fda~sTvti-SpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~lVlkAHkeA   78 (142)
                      ++.|..|.|.|.++.. ||.. +|..   +....--||-|.++.+ .|+|+|||+..-..|+.-|..|.  .++||++
T Consensus        46 ~~~~~~p~G~I~L~g~-tV~~~~~~~---~~~~~k~~F~~v~~~~-ty~~~Adseee~~~WikAi~~A~--~~~~~~~  116 (126)
T 1wi1_A           46 REKKAEPQELLQLDGY-TVDYTDPQP---GLEGGRAFFNAVKEGD-TVIFASDDEQDRILWVQAMYRAT--GQSHKPV  116 (126)
T ss_dssp             CSSSSCCSEEEECSSC-EEEECCCCS---SCCSCSSEEEEECSSC-EEEEECSSHHHHHHHHHHHHHHH--TCSSCCC
T ss_pred             cccCCCCceEEECCCc-EEEEecCCc---ccccCceEEEEecCCc-eEEEEcCCHHHHHHHHHHHHHHh--ccccCCC
Confidence            5678899999999984 5543 2322   1112335998888866 69999999999999999997654  3889986

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=97.17  E-value=0.0014  Score=51.61  Aligned_cols=62  Identities=16%  Similarity=0.326  Sum_probs=46.4

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLV   71 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~lV   71 (142)
                      .|..++|.|.++ .++|...+-+    + -..+||.|-|+..+.|+|+|||+..+..|+..|+.+..-
T Consensus        64 ~~~~p~g~I~L~-~~~v~~~~~~----~-kk~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~  125 (263)
T 3a8p_A           64 QNSAPRCALFAE-DSIVQSVPEH----P-KKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACAS  125 (263)
T ss_dssp             --CCCSEEEECT-TCEEEECTTC----S-SCSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cccCccceEEcC-CcEEEECCcC----C-CCCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence            356789999987 4455543221    1 236899999988889999999999999999999875443

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=97.13  E-value=0.00072  Score=53.42  Aligned_cols=65  Identities=14%  Similarity=0.197  Sum_probs=46.4

Q ss_pred             CCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHHHHHHhhh
Q 043050            6 PTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKE   77 (142)
Q Consensus         6 ~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~lVlkAHke   77 (142)
                      ..++|+|.++...+|...+     + .-+.+||.|-|+ .+.|+|+|||....+.|+..|+.+..-.+.+..
T Consensus        55 ~~p~g~I~L~~~~~V~~~~-----~-~~~~~~F~I~t~-~rty~l~A~se~e~~~Wi~aL~~~~~~~k~~~~  119 (264)
T 1qqg_A           55 SAPKRSIPLESCFNINKRA-----D-SKNKHLVALYTR-DEHFAIAADSEAEQDSWYQALLQLHNRAKGHHD  119 (264)
T ss_dssp             SCCSEEEEGGGEEEEEEEC-----C-SSCSSEEEEEES-SCEEEEECSSHHHHHHHHHHHHHHC--------
T ss_pred             cCcceEEEeeceEEEEecc-----C-CCCCcEEEEEEC-CEEEEEEeCCHHHHHHHHHHHHHHHHhcccccc
Confidence            4799999999877665443     1 234579999998 568999999999999999999887665555444

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.12  E-value=0.0011  Score=44.29  Aligned_cols=36  Identities=22%  Similarity=0.470  Sum_probs=32.3

Q ss_pred             cceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050           34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus        34 DgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      .-.||.|-|+..+.|+|+|||+.....|+..|+.+.
T Consensus        81 r~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~  116 (123)
T 1wjm_A           81 RKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI  116 (123)
T ss_dssp             CSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            468999999988899999999999999999998653

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.05  E-value=0.0024  Score=42.41  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=29.1

Q ss_pred             eeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050           36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus        36 CCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      .||-|-||. +.|+|+|||+.....|+..|+.+.
T Consensus        68 ~~F~I~~~~-r~~~l~a~s~~e~~~Wi~al~~~~  100 (114)
T 2da0_A           68 KSFDLISHN-RTYHFQAEDEQDYVAWISVLTNSK  100 (114)
T ss_dssp             SCEEEEETT-EEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCC-cEEEEEcCCHHHHHHHHHHHHHHH
Confidence            499999874 589999999999999999998754

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=96.98  E-value=0.0023  Score=51.71  Aligned_cols=60  Identities=22%  Similarity=0.438  Sum_probs=45.7

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEecccc---------------------ceeeEEeecChHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQ---------------------KKDYFLCAETPGAARAW   61 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~---------------------kk~yfLcAETp~aAraW   61 (142)
                      ..|..++|+|.++..+ |  .++.    ..-...||-|-+|.                     ...|+|+|||....+.|
T Consensus       247 ~~~~~p~G~I~L~~~~-v--~~~~----~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~W  319 (347)
T 2r09_A          247 TTDKEPRGIIPLENLS-I--REVE----DPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEW  319 (347)
T ss_dssp             TTCSSCSEEEECTTCE-E--EEEC----CSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHH
T ss_pred             CCccCCcEEEEcCCeE-E--EEcc----CCCCCCEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHH
Confidence            3567899999998764 3  2322    23345799998874                     36799999999999999


Q ss_pred             HHHHHHHH
Q 043050           62 VSTLHAAQ   69 (142)
Q Consensus        62 v~tlrAa~   69 (142)
                      +..|+.+.
T Consensus       320 i~aI~~ai  327 (347)
T 2r09_A          320 MKSIKASI  327 (347)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998753

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=96.94  E-value=0.0003  Score=47.53  Aligned_cols=35  Identities=17%  Similarity=0.292  Sum_probs=31.9

Q ss_pred             cceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050           34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus        34 DgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ...||.|-|+..+.|+|+|||+.....|+..|+.+
T Consensus        83 r~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~  117 (122)
T 1dro_A           83 KKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQ  117 (122)
T ss_dssp             STTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHH
Confidence            35899999998889999999999999999999865

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=96.84  E-value=0.0023  Score=43.96  Aligned_cols=57  Identities=9%  Similarity=0.226  Sum_probs=40.9

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCCcceeEEeccccc--eeeEEeecChHHHHHHHHHHHHH
Q 043050            7 TVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQK--KDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         7 ~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~k--k~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .++|.|.+.... |...+- -+...+   -||-|-+|..  ..|||+|||+.....|+..||.+
T Consensus        59 ~~~G~I~L~~~~-v~~~~~-~~~~k~---~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a  117 (124)
T 2w2x_D           59 LCRGILDLNTYN-VVKAPQ-GKNQKS---FVFILEPKQQGDPPVEFATDKVEELFEWFQSIREI  117 (124)
T ss_dssp             SCSEEEEGGGEE-EEECTT-CBTTBS---EEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHH
T ss_pred             ccccEEECCCCE-EEEccC-CcCCCC---EEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHH
Confidence            458999888554 433332 122233   4999988864  56999999999999999999865

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=96.53  E-value=0.003  Score=52.12  Aligned_cols=61  Identities=13%  Similarity=0.292  Sum_probs=43.5

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEec---cccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIG---TPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIg---t~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      +.|..|+|+|.++.. +++++|....     ..+||-|-   +.....|||+|||+.....|+..||++.
T Consensus       182 ~~~~~p~g~I~L~~~-~~~~~~~~~~-----~~~~f~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~  245 (386)
T 3lju_X          182 NDAKEPKAVMKIEHL-NATFQPAKIG-----HPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAAR  245 (386)
T ss_dssp             ----CCSEEEEGGGE-EEEECHHHHT-----STTCEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCccCcccEEEeecc-EEEEcccccC-----CCceEEEEEecCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence            457889999999885 3444554433     34677664   4555799999999999999999999864

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=96.48  E-value=0.0054  Score=49.18  Aligned_cols=58  Identities=17%  Similarity=0.263  Sum_probs=42.4

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccc-eeeEEeecChHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~k-k~yfLcAETp~aAraWv~tlrAa   68 (142)
                      +|..+.|.|.++.. +|...+      ..-.-+||-|-||.. +.|+|+|||+...+.|+..|+.+
T Consensus       315 ~~~~~~~~i~l~~~-~v~~~~------~~~r~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~  373 (385)
T 2q13_A          315 GDVAGGLAMDIDNC-SVMAVD------CEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNI  373 (385)
T ss_dssp             SCSSCEEEEECTTC-EEEEEC------CTTCSSEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHH
T ss_pred             CCcCCCceEEccce-EEEecc------ccCCCceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHH
Confidence            35566777777653 343322      122347999999974 68999999999999999999864

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=96.25  E-value=0.016  Score=39.87  Aligned_cols=35  Identities=6%  Similarity=0.260  Sum_probs=31.9

Q ss_pred             ceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050           35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus        35 gCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      -+||-|-|+...+|+|.|+++.....|+..|+.+.
T Consensus        88 k~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI  122 (124)
T 3pp2_A           88 KNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGI  122 (124)
T ss_dssp             SSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence            47999999998999999999999999999998753

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=96.07  E-value=0.008  Score=48.55  Aligned_cols=59  Identities=22%  Similarity=0.364  Sum_probs=41.0

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccce-eeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKK-DYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk-~yfLcAETp~aAraWv~tlrAa   68 (142)
                      +++..+.|.|.+.. .+|  .|..-. +.   -.||-|.||.++ -|+|+|||+.....|+..|+.+
T Consensus       337 ~~~~~~~~~~~l~~-~~v--~~~~~~-~r---~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a  396 (407)
T 4h8s_A          337 RGAVAGGLIQDLDN-CSV--MAVDCE-DR---RYCFQITTPNGKSGIILQAESRKENEEWICAINNI  396 (407)
T ss_dssp             TTCSSCCCCBCSSC-CEE--EEECCT-TC---SSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHH
T ss_pred             CCCCCCCeEEECCc-eEE--EECCCC-CC---CceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHH
Confidence            34555666665542 333  443321 22   369999999765 5999999999999999999764

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=95.87  E-value=0.028  Score=39.33  Aligned_cols=60  Identities=20%  Similarity=0.253  Sum_probs=44.5

Q ss_pred             CcceeEEeecCceeeeeccc----cCCCCCCcceeEEeccc-----cceeeEEeecChHHHHHHHHHHHHH
Q 043050            7 TVKGTITFDENSTIAISPVN----FNGLPKYDGCCFYIGTP-----QKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         7 ~~rg~I~fda~sTvtiSpvN----fhg~~kyDgCCfYIgt~-----~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .|.|.|-+  +....++||.    +|-.++-..|.|-|.++     ....|||+|+|...-..||.-|+.+
T Consensus        45 ~p~~~Idl--~~~~~V~~V~~~d~i~~~~~~~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~  113 (117)
T 2rov_A           45 NPYMVLDI--DKLFHVRPVTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKK  113 (117)
T ss_dssp             CCSEEECG--GGEEEEEECCTTTCSSSCTTTGGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CceEEEEC--cccEEEEEcccccccccccccCCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence            56787755  4555556652    45555655799999764     3578999999999999999999854

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.83  E-value=0.018  Score=43.38  Aligned_cols=55  Identities=18%  Similarity=0.469  Sum_probs=45.8

Q ss_pred             CcceeEEeecCceeeeeccccC-CCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHH
Q 043050            7 TVKGTITFDENSTIAISPVNFN-GLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (142)
Q Consensus         7 ~~rg~I~fda~sTvtiSpvNfh-g~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlr   66 (142)
                      ++|.+|.+.+  -|+|+|.|-. +-|| |--+|.|-|+++ -|+|+||++ ....|+..|-
T Consensus        62 ~~rrVIrLsd--CisV~~~~~e~~~pk-~~~aF~l~T~er-~~~laAe~~-E~~~Wi~~ic  117 (127)
T 2d9w_A           62 AARKVIRLSD--CLRVAEAGGEASSPR-DTSAFFLETKER-LYLLAAPAA-ERGDWVQAIC  117 (127)
T ss_dssp             CCEEEECGGG--EEEEEECCSCSSSCS-SCEEEEEEESSC-EEEEEECHH-HHHHHHHHHH
T ss_pred             CCceEEEhhh--CCeEecccCccCCCC-cceEEEEEeCCc-EEEEEeCcH-HHHHHHHHHH
Confidence            5788999986  4667799888 7788 447899999986 899999987 7999999874

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=95.62  E-value=0.024  Score=39.95  Aligned_cols=61  Identities=18%  Similarity=0.301  Sum_probs=45.3

Q ss_pred             CcceeEEeecCceeeeec---c--ccCCCCCCcceeEEecccc-ceeeEEeecChHHHHHHHHHHHHH
Q 043050            7 TVKGTITFDENSTIAISP---V--NFNGLPKYDGCCFYIGTPQ-KKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         7 ~~rg~I~fda~sTvtiSp---v--Nfhg~~kyDgCCfYIgt~~-kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..++.|.+++...|..--   .  |+. +..-+.|||-|..-. .+-+.|+|+|+..++.|+..||+-
T Consensus        53 ~~~~~i~i~~I~eIr~G~~s~~~~~~~-~~~~~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L  119 (131)
T 1mai_A           53 PESQLFSIEDIQEVRMGHRTEGLEKFA-RDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKI  119 (131)
T ss_dssp             TTTTEEEGGGEEEEEESSCSHHHHHHC-TTSCGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CcCcEEEHhhhHHHHCCCCCHHHHhhh-hcCCccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence            367888888887776642   2  111 122378999997665 478999999999999999999873

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=94.06  E-value=0.053  Score=43.50  Aligned_cols=36  Identities=17%  Similarity=0.337  Sum_probs=28.0

Q ss_pred             eeEEeccccce-----eeEEeecChHHHHHHHHHHHHHHHH
Q 043050           36 CCFYIGTPQKK-----DYFLCAETPGAARAWVSTLHAAQLV   71 (142)
Q Consensus        36 CCfYIgt~~kk-----~yfLcAETp~aAraWv~tlrAa~lV   71 (142)
                      =||.|-.++..     -+|||+|++.....|++.||.|+--
T Consensus       201 ~~F~ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~g  241 (256)
T 3hk0_A          201 HGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKYG  241 (256)
T ss_dssp             EEEEEEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            47777643331     3999999999999999999987643

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=93.84  E-value=0.075  Score=38.72  Aligned_cols=58  Identities=17%  Similarity=0.222  Sum_probs=41.2

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccc-cceeeEEeecChHHHHHHHHHHHHHH
Q 043050            5 EPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTP-QKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         5 e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~-~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      +..|.|.|.+ .+.+|.. +-    .++ .-=||.|-+| ....|+|.|+|+..+..|+.-|++|.
T Consensus        53 ~~~P~~~i~L-~g~~V~~-~e----~~~-~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~  111 (126)
T 2dtc_A           53 KSTPGKKVSI-VGWMVQL-PD----DPE-HPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDAC  111 (126)
T ss_dssp             CSSCSEEEEC-TTCEEEC-CC----CTT-STTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccCCCceEEe-CCCEEEe-cC----CCC-CCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHH
Confidence            3467888877 3445542 11    121 1238999988 67889999999999999999998753

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=93.64  E-value=0.11  Score=38.77  Aligned_cols=60  Identities=17%  Similarity=0.261  Sum_probs=43.7

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccc-------eeeEEeecChHHHHHHHHHH-HHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQK-------KDYFLCAETPGAARAWVSTL-HAA   68 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~k-------k~yfLcAETp~aAraWv~tl-rAa   68 (142)
                      .|-.++|.|.+|..+---+.| +|.+    .-=||-|-.|..       +-|+|+|+|+..-..|++-+ ||.
T Consensus        49 ~eke~~G~IpL~~~~vr~v~~-~~~~----rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra~  116 (125)
T 1dyn_A           49 EEKEKKYMLSVDNLKLRDVEK-GFMS----SKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAG  116 (125)
T ss_dssp             TCSCEEEEEECTTEEEEECCS-CSSS----SCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             cccccceEEECCCceEeccCC-CCCC----CceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHhCc
Confidence            477899999997655333333 2322    335999887753       38999999999999999988 654

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=93.36  E-value=0.11  Score=39.80  Aligned_cols=51  Identities=25%  Similarity=0.617  Sum_probs=37.0

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            7 TVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         7 ~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..||.|-+|..-.|.  +.|+.        ||+|.||- +-|+|.+- ++-|..|+.-|..++
T Consensus        88 ~~KGeIpls~~l~ve--~k~~~--------~F~I~Tp~-RtY~~~d~-~~~AqeWv~aI~~~~  138 (151)
T 1w1g_A           88 VLKGEIPWSQELRPE--AKNFK--------TFFVHTPN-RTYYLMDP-SGNAHKWCRKIQEVW  138 (151)
T ss_dssp             EEEEEECCCTTCEEE--ESSSS--------EEEEEETT-EEEEEECT-TSCHHHHHHHHHHHH
T ss_pred             cccceEecCCCeeEE--EcCCC--------EEEEECCC-ceEEEEcC-ccCHHHHHHHHHHHH
Confidence            457888888544443  33332        99999998 68888875 889999998776543

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=92.88  E-value=0.11  Score=42.28  Aligned_cols=34  Identities=24%  Similarity=0.576  Sum_probs=27.7

Q ss_pred             eEEeccccc-----eeeEEeecChHHHHHHHHHHHHHHH
Q 043050           37 CFYIGTPQK-----KDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus        37 CfYIgt~~k-----k~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      ||.|-.|++     .-+|||||++.....|+..||.++-
T Consensus       228 ~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~  266 (281)
T 4gmv_A          228 CLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY  266 (281)
T ss_dssp             EEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence            777766543     2499999999999999999998753

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=90.23  E-value=0.26  Score=38.91  Aligned_cols=63  Identities=13%  Similarity=0.162  Sum_probs=37.8

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceee---EEeecChHHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDY---FLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~y---fLcAETp~aAraWv~tlrAa~   69 (142)
                      .+..++|.|.+...+.+...++--.   +...+||.|-+++...+   .+++|+|.....|+..|+.+.
T Consensus        42 ~~~~~~~~i~l~~~~~~~~~~~~~~---~~~~~~f~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i  107 (446)
T 4ejn_A           42 PQDVDQREAPLNNFSVAQCQLMKTE---RPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVA  107 (446)
T ss_dssp             C-------CCCGGGBCTTCEEEEEC---SSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CCCCccCcccccCccccceeecCCC---CCCCceeEEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhh
Confidence            3455677777766554332222111   22246999988766555   789999999999999998763

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=88.76  E-value=0.32  Score=39.54  Aligned_cols=38  Identities=11%  Similarity=0.343  Sum_probs=33.5

Q ss_pred             eeEEeccccceeeEEeecChHHHHHHHHHHHHHHHHHH
Q 043050           36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLK   73 (142)
Q Consensus        36 CCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~lVlk   73 (142)
                      -||.|-|+...+|+|.|+++..+..|+..|+.+....-
T Consensus        90 ~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~~~~  127 (279)
T 3a8n_A           90 FVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAAV  127 (279)
T ss_dssp             SCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHhhhc
Confidence            59999999999999999999999999999987655433

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=87.17  E-value=0.98  Score=35.12  Aligned_cols=36  Identities=17%  Similarity=0.267  Sum_probs=31.3

Q ss_pred             cceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050           34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus        34 DgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..++|.|..+..+.|.|+|+|+..-+.|+..|+.++
T Consensus       313 ~~~~F~i~~~~~~~~~l~a~s~~ek~~W~~~i~~~~  348 (354)
T 1dbh_A          313 YKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQ  348 (354)
T ss_dssp             CCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCccEEEecCCCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence            468999988766789999999999999999998764

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=86.15  E-value=1.4  Score=34.68  Aligned_cols=38  Identities=26%  Similarity=0.518  Sum_probs=31.4

Q ss_pred             CcceeEEecc--c--cceeeEEeecChHHHHHHHHHHHHHHH
Q 043050           33 YDGCCFYIGT--P--QKKDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus        33 yDgCCfYIgt--~--~kk~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      -|.|+|.|-.  |  ....|.|.|.|+..-..|+..|+.+..
T Consensus       277 ~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~  318 (354)
T 2rgn_B          277 GDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILE  318 (354)
T ss_dssp             GCTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHH
Confidence            4679999965  3  256899999999999999999988653

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=85.80  E-value=1.5  Score=33.73  Aligned_cols=50  Identities=16%  Similarity=0.286  Sum_probs=35.4

Q ss_pred             eeeeccccCCCCCCcceeEEecc---c-cceeeEEeecChHHHHHHHHHHHHHH
Q 043050           20 IAISPVNFNGLPKYDGCCFYIGT---P-QKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus        20 vtiSpvNfhg~~kyDgCCfYIgt---~-~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      |.++-+.+.....-|.|+|.|-+   | ....|-|+|+|+..-..|+..|+.+.
T Consensus       254 i~l~~~~v~e~~~~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i  307 (311)
T 1nty_A          254 LFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVI  307 (311)
T ss_dssp             EEGGGEEEECCCTTCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eeccceeeEEccCCCCceEEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHHH
Confidence            33444444333444679999965   2 34567899999999999999998764

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=84.33  E-value=2.7  Score=31.60  Aligned_cols=53  Identities=21%  Similarity=0.330  Sum_probs=36.8

Q ss_pred             cceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050            8 VKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus         8 ~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      ..|++.++.-+++.-++..  .  +-+  +|-|.|+.+ -++|++|||.....|+..|..
T Consensus       174 ~~g~~~~~~i~s~~~~~~~--~--~~~--~f~iit~~r-~~~~~a~s~~e~~~Wi~~lq~  226 (228)
T 3tfm_A          174 AVGTLDVGLIDSVCASDSP--D--RPN--SFVIITANR-VLHCNADTPEEMHHWITLLQR  226 (228)
T ss_dssp             CSEEEEGGGEEEEEECCCS--S--CTT--EEEEEETTE-EEEEECSSHHHHHHHHHHHCS
T ss_pred             ccccCChhheeccccCCCC--C--CCC--cEEEEeCCc-eEEEEcCCHHHHHHHHHHHhh
Confidence            4577777766666544422  2  111  777777755 788999999999999998753

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=84.24  E-value=2.6  Score=33.23  Aligned_cols=39  Identities=28%  Similarity=0.339  Sum_probs=31.1

Q ss_pred             CCCcceeEEeccc-cceeeEEeecChHHHHHHHHHHHHHH
Q 043050           31 PKYDGCCFYIGTP-QKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus        31 ~kyDgCCfYIgt~-~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      .+-|.++|.|-.. ....|-|+|+|+..-+.|+..|+.+.
T Consensus       285 ~~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai  324 (353)
T 1kz7_A          285 VKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVL  324 (353)
T ss_dssp             BTTBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            3447899999653 34578889999999999999998654

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=83.07  E-value=1.8  Score=33.77  Aligned_cols=37  Identities=27%  Similarity=0.357  Sum_probs=30.4

Q ss_pred             CcceeEEecccc----ceeeEEeecChHHHHHHHHHHHHHH
Q 043050           33 YDGCCFYIGTPQ----KKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus        33 yDgCCfYIgt~~----kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      -|.++|+|.+..    ...|-|+|.|+..-+.|+..|+.|.
T Consensus       325 ~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai  365 (368)
T 1xcg_A          325 TDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAV  365 (368)
T ss_dssp             SCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHH
Confidence            356799986542    4679999999999999999998765

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=80.37  E-value=3.9  Score=28.40  Aligned_cols=36  Identities=17%  Similarity=0.193  Sum_probs=29.5

Q ss_pred             cceeEEeccccceeeEEeecChHHHHHHHHHHHHHHH
Q 043050           34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus        34 DgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      -.=||.|.++++ .+.+.+||+..=..|.+.++-|.-
T Consensus        72 ~~n~f~i~~~~~-s~~~~aes~~eK~~Wl~~~~~a~~  107 (113)
T 1zc3_B           72 MKDMFKLLMFPE-SRIFQAENAKIKREWLEVLEETKR  107 (113)
T ss_dssp             BSSEEEEEETTE-EEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCc-eEEEEcCCHHHHHHHHHHHHHHHH
Confidence            355899988776 567789999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	142
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	1e-06
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	1e-06
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	2e-06
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	3e-05
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	7e-05
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	1e-04
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	2e-04
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	2e-04
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	3e-04
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	4e-04
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	0.001
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	0.003
d1wjma_	123	b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens),	0.003
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	0.004
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	0.004
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	0.004

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 1e-06
 Identities = 14/66 (21%), Positives = 24/66 (36%)

Query: 3   RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWV 62
           R +   KG I   E   +A            D   F+     ++ Y  CA+   +A+ WV
Sbjct: 44  RMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWV 103

Query: 63  STLHAA 68
             + + 
Sbjct: 104 DRIQSC 109

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-06
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 9   KGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
            G I        ++   +     + +     I T  +  YFL A TP     W+  +  A
Sbjct: 44  LGAIHLRGCVVTSVESNSNGRKSEEENLFEII-TADEVHYFLQAATPKERTEWIKAIQMA 102

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 9   KGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
           KG    D       + +  +G       CF I  P K+ Y   A +P  A  WV  L   
Sbjct: 148 KGEFAIDGYDVRMNNTLRKDGKKDC---CFEICAPDKRIYQFTAASPKDAEEWVQQL--- 201

Query: 69  QLVLK 73
           + +L+
Sbjct: 202 KFILQ 206

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 3e-05
 Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 2/62 (3%)

Query: 9   KGTITFDENSTIAIS--PVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66
            G  +   +   A+    V         G  F + T     Y++ A +      W+  + 
Sbjct: 54  VGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIK 113

Query: 67  AA 68
             
Sbjct: 114 KL 115

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 7e-05
 Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 4/60 (6%)

Query: 9   KGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
            G++     +     P    G        F    P  + Y L A+T    R W+  L  A
Sbjct: 50  LGSVLLPSYNIRPDGPGAPRGRR----FTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA 105

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (86), Expect = 1e-04
 Identities = 5/33 (15%), Positives = 10/33 (30%)

Query: 36  CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
             F +      +Y L         +WV+ +   
Sbjct: 96  NTFVLKVENGAEYILETIDSLQKHSWVADIQGC 128

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 2e-04
 Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 32  KYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLSGNGSA 88
              G  F+    +       ++       WV  ++ A    ++HK    + SG  S 
Sbjct: 72  LEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRA--TGQSHKPVPPTQSGPSSG 126

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 32  KYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLK 73
                CF + +  ++ Y   A +P  AR WV  +     +LK
Sbjct: 65  SKKESCFELTSQDRRTYEFTATSPAEARDWVDQI---SFLLK 103

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 3e-04
 Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
            F I T   + +++ A++P    +W+  +  A
Sbjct: 67 NLFEIVTT-SRTFYVQADSPEEMHSWIKAVSGA 98

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (81), Expect = 4e-04
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 36  CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLK 73
           CCF I  P K+ Y   A +P  A  WV  L   + +L+
Sbjct: 77  CCFEICAPDKRIYQFTAASPKDAEEWVQQL---KFILQ 111

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 34.9 bits (79), Expect = 0.001
 Identities = 6/33 (18%), Positives = 10/33 (30%)

Query: 36  CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
               +       + L A        WV++L A 
Sbjct: 85  HVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQ 117

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (75), Expect = 0.003
 Identities = 8/38 (21%), Positives = 14/38 (36%)

Query: 31  PKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
            K     F +    K  Y L A++      W++ L+  
Sbjct: 85  NKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKI 122

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

 Score = 33.5 bits (75), Expect = 0.003
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 31  PKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
            +     F +G    K+Y   A+      +W+  ++AA
Sbjct: 78  YRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAA 115

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (74), Expect = 0.004
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
            F I T +++D+F  A       AWV  ++ A
Sbjct: 67 FVFKITTTKQQDHFFQAAFLEERDAWVRDINKA 99

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (75), Expect = 0.004
 Identities = 4/38 (10%), Positives = 12/38 (31%), Gaps = 1/38 (2%)

Query: 31  PKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
            +     F +   +    ++ + T    + W+  L   
Sbjct: 94  IERFPYPFQVVYDEGP-LYVFSPTEELRKRWIHQLKNV 130

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 32.7 bits (73), Expect = 0.004
 Identities = 5/33 (15%), Positives = 11/33 (33%)

Query: 36  CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68
             F +      +Y   A+       W+  + +A
Sbjct: 74  HVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	98.86
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	98.39
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	98.29
d1wi1a_	126	Calcium-dependent activator protein for secretion,	98.24
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	98.12
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	98.1
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	98.07
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	98.02
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	98.01
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	98.0
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	98.0
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	97.99
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	97.98
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	97.97
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	97.9
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	97.81
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	97.78
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	97.75
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	97.73
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	97.71
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	97.64
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	97.6
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	97.54
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	97.46
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	97.36
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	97.28
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	97.28
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	97.18
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	97.14
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	97.11
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	97.09
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	97.03
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	96.72
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	95.69
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	95.25
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	94.69
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	93.02
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	91.65
d2zkmx3	131	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	91.36
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	89.84
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	85.4
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	82.23

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=1.4e-09  Score=69.64  Aligned_cols=66  Identities=21%  Similarity=0.403  Sum_probs=57.1

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .+|..++|+|.++....|.+...+.+.....+.+||++.+...+.|||||||+...+.||..|+.+
T Consensus        44 ~~~~~p~g~i~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~s~~e~~~Wv~~l~~a  109 (117)
T d1v5ua_          44 RMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSC  109 (117)
T ss_dssp             SSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred             ccccCcceEEEecceEEEeecccccccccccccceEEEeeCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence            567899999999999999988888888877777766666666779999999999999999999865

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.2e-08  Score=61.43  Aligned_cols=65  Identities=25%  Similarity=0.356  Sum_probs=49.1

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      +.+..++|.|.++....+.+ +.+..+.+....+||+|.++....|+|||||+.....|+..||.|
T Consensus        38 ~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~s~~e~~~W~~ai~~a  102 (104)
T d2i5fa1          38 AGAEDPLGAIHLRGCVVTSV-ESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA  102 (104)
T ss_dssp             TSCSSCSEEEECTTCEEEEE-CC--------CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccCccceEeecceEEEEe-ccCcccccccCccEEEEECCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence            56788999998877655544 446777777788999999999999999999999999999999876

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=6.2e-07  Score=57.24  Aligned_cols=60  Identities=22%  Similarity=0.403  Sum_probs=48.7

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..|..+.|.|.++..+.|...+.      +....||.|.||.+ .|+|+|||+...+.|+..||.+.
T Consensus        38 ~~~~~~~g~i~L~~~~~v~~~~~------~~~~~~F~i~~~~r-~~~l~a~s~~~~~~Wi~ai~~~i   97 (100)
T d1faoa_          38 QMSPEPIRILDLTECSAVQFDYS------QERVNCFCLVFPFR-TFYLCAKTGVEADEWIKILRWKL   97 (100)
T ss_dssp             TTCSSCSEEEEGGGCCEEEEECS------SSSSSEEEEEETTE-EEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCccCceEEechheEEEEeccc------cccccccccccCCe-EEEEEeCCHHHHHHHHHHHHHHH
Confidence            56788999999998777666542      12357999999975 79999999999999999998753

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=8.9e-07  Score=62.30  Aligned_cols=64  Identities=27%  Similarity=0.498  Sum_probs=50.1

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      +.+..++|.|.++..+.+.+......+   -.-+||.|.||.++.|+|||||+..++.|+..|+.+.
T Consensus       142 ~~~~~~~~~i~L~~~~~~~~~~~~~~~---~~~~~F~i~~~~~r~~~f~a~s~~e~~~Wi~al~~~i  205 (209)
T d1u5ea1         142 DKDKQQKGEFAIDGYDVRMNNTLRKDG---KKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  205 (209)
T ss_dssp             TTCSSCSEEEECTTCEEEECGGGCSST---TGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCccceEEEecceeeeecccccccc---CCCcEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence            456779999999887666554433222   2348999999988899999999999999999987643

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=7.9e-07  Score=57.65  Aligned_cols=78  Identities=14%  Similarity=0.138  Sum_probs=54.3

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHHHHHHhhhHhhhcC
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSLS   83 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~lVlkAHkeAvn~ls   83 (142)
                      .+..++|.|.++....+...|.+-.   .-.-|||.|.++. +.|||||||......|+.-|+.|.  .++|++....-+
T Consensus        48 ~~~~~~~~i~l~~~~~~~~~~~~~~---~~~~~~~~i~~~~-r~~~f~A~s~~e~~~Wv~al~~a~--~~~~~~~~~~~~  121 (126)
T d1wi1a_          48 KKAEPQELLQLDGYTVDYTDPQPGL---EGGRAFFNAVKEG-DTVIFASDDEQDRILWVQAMYRAT--GQSHKPVPPTQS  121 (126)
T ss_dssp             SSSCCSEEEECSSCEEEECCCCSSC---CSCSSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHH--TCSSCCCCCCCC
T ss_pred             ccccceeeeeeceeeeeeccccccc---cccceeEEeccCC-eEEEEEECCHHHHHHHHHHHHHHH--HhhcCCCCCCCC
Confidence            3456789999887766555554322   2234556665554 589999999999999999997653  467777766666


Q ss_pred             CCCc
Q 043050           84 GNGS   87 (142)
Q Consensus        84 gng~   87 (142)
                      |+.|
T Consensus       122 ~p~s  125 (126)
T d1wi1a_         122 GPSS  125 (126)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            6554

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=2.1e-06  Score=53.92  Aligned_cols=65  Identities=15%  Similarity=0.285  Sum_probs=49.1

Q ss_pred             CCCCCcceeEEeecCceeeeec--cccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISP--VNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSp--vNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      ..+..|+|.|.++....+.++.  ..+-.......+||.|-++..+.|||+|||+...+.|+.-|+.
T Consensus        48 ~~~~~p~~~i~L~~~~i~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~f~a~s~ee~~~Wi~ai~~  114 (116)
T d1x1ga1          48 KEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKK  114 (116)
T ss_dssp             SCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHH
T ss_pred             cccccceeEEEcCCCEEEEecccCcccccccccccceeEEEeCCCeEEEEECCCHHHHHHHHHHHHh
Confidence            3456789999998765443332  2333344556789999999999999999999999999999875

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=5.8e-06  Score=52.37  Aligned_cols=63  Identities=25%  Similarity=0.420  Sum_probs=48.4

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..+..++|.|.+...+.+...   -.....-..+||.|.++.++.|+||+||+.....|+..|+.+
T Consensus        47 ~~~~~p~g~i~L~~~~~~~~~---~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~~  109 (111)
T d1u5fa1          47 DKDKQQKGEFAIDGYDVRMNN---TLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI  109 (111)
T ss_dssp             TTCSSCSEEEECTTCEEEECT---TSCSSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccCcceEEEecccEEEeec---cccccccccceEEEEccCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence            456678999999876544332   223333345899999999999999999999999999999864

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.4e-06  Score=54.63  Aligned_cols=65  Identities=23%  Similarity=0.306  Sum_probs=52.2

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEE-----------eecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFL-----------CAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfL-----------cAETp~aAraWv~tlrAa   68 (142)
                      ..|..|+|.|.++....|...+.......+-..+||-|-||.+ .|||           |+|++..++.|+.-||.|
T Consensus        35 ~~~~~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~r-tyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A  110 (112)
T d2coaa1          35 NTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTANA-TYFVGEMPGGTPGGPSGQGAEAARGWETAIRQA  110 (112)
T ss_dssp             SSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSSC-CCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCCccceEEeeeccccccccccccccccCCCccEEEEEeCCe-EEEEecCCccccccccccChHHHHHHHHHHHHh
Confidence            4678899999999999887665555445556779999999986 6666           668899999999999875

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=6.8e-06  Score=50.97  Aligned_cols=61  Identities=25%  Similarity=0.361  Sum_probs=44.8

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .+..+++.|.+.... |  +++...... -..+||.|.++..+.|+|+|||+...++|+..|+.|
T Consensus        45 ~~~~~~~~i~l~~~~-v--~~~~~~~~~-~~~~~~~i~~~~~~~~~~~a~s~~e~~~Wi~al~~A  105 (107)
T d1upqa_          45 REESVLGSVLLPSYN-I--RPDGPGAPR-GRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRA  105 (107)
T ss_dssp             TCCSCCEEEEGGGCE-E--EECCSSCTT-SSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccccceecccceE-E--EEeccCccc-CcceEEEEEcCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence            456678888876443 3  333322222 235799999999999999999999999999999764

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.02  E-value=1.2e-05  Score=52.32  Aligned_cols=59  Identities=14%  Similarity=0.317  Sum_probs=47.3

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      +++..++|.|.++..++|..++..    .+   =||.|.++..+.|+|+|||+.....|+..|+.|
T Consensus        43 ~~~~~~~~~i~l~~~~~v~~~~~~----~~---~~f~i~~~~~~~~~f~a~s~~e~~~W~~al~~a  101 (119)
T d1omwa2          43 GEGEAPQSLLTMEEIQSVEETQIK----ER---KCLLLKIRGGKQFVLQCDSDPELVQWKKELRDA  101 (119)
T ss_dssp             CTTSCCCEEEEGGGEEEEEEEESS----SC---EEEEEEETTSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ecccccCccceecccccccccccc----cc---ceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            356677899999988888665532    22   278898888889999999999999999999865

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=4.4e-06  Score=56.31  Aligned_cols=62  Identities=13%  Similarity=0.260  Sum_probs=47.1

Q ss_pred             CCCCCcceeEEeecCceeee-eccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAI-SPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvti-SpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..+..++|.|.+.....+.. .|.+...    .-+||.|-|+....|+|||||+..+++|+..|+.+
T Consensus        66 ~~~~k~~g~i~l~~~~~~~~~~~~~~~~----~~~~F~l~t~~~~~y~f~A~s~~e~~~Wv~ai~~a  128 (136)
T d1v5ma_          66 PKASRPKVSIPLSAIIEVRTTMPLEMPE----KDNTFVLKVENGAEYILETIDSLQKHSWVADIQGC  128 (136)
T ss_dssp             TTSSSCSSCEETTTCCBCCCCCCSSSCC----CTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccCcCcceecccceeeeeeccccCCC----CCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            45678888888876555432 2333322    23899999999889999999999999999999764

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=5.4e-06  Score=55.79  Aligned_cols=59  Identities=20%  Similarity=0.363  Sum_probs=47.4

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      +.+..++|+|.++..+.+....       +-..-||.|.++..+.|+|+|||+...+.|+..|+.+
T Consensus        64 ~~~~~~~g~i~l~~~~~~~~~~-------~~~~~~F~i~~~~~~~~~l~A~s~~e~~~Wi~aL~~~  122 (150)
T d1wg7a_          64 KISKEPKGSIFLDSCMGVVQNN-------KVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKI  122 (150)
T ss_dssp             CCSSCCSEEECTTTCCEECCCC-------SSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccCc-------cccceEEEEEcCCCeEEEEEeCCHHHHHHHHHHHHHH
Confidence            4567899999998876543322       2345799999998889999999999999999999864

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=1e-05  Score=50.88  Aligned_cols=61  Identities=20%  Similarity=0.367  Sum_probs=46.6

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccc--eeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQK--KDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~k--k~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..+..++|.|.++. .+|...|.+..+- +|   ||.|.+|+.  +.|+|+|||+.....|+..||.+
T Consensus        35 ~~~~~~~~~i~l~~-~~v~~~~~~~~~~-~~---~f~i~~~~~~~~~~~~~a~s~~e~~~Wi~ai~~~   97 (101)
T d2fjla1          35 TSSDLLRGVLDVPA-CQIAIRPEGKNNR-LF---VFSISMPSVAQWSLDVAADSQEELQDWVKKIREV   97 (101)
T ss_dssp             CSCTCCCEEECSTT-CEEEEETTCSSSC-SC---EEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHH
T ss_pred             cccceecceEEcCC-ceeEeeeeecccc-cc---eeEEeccccccEEEEEEeCCHHHHHHHHHHHHHH
Confidence            45678899999975 4566666554332 23   899988864  56999999999999999999864

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=9.7e-06  Score=50.13  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=49.3

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ++..++|.|.++....+...+.....   ...+||-|.+|. +.|+|++||+...++|+..|+.|.
T Consensus        38 ~~~~~~~~i~l~~~~~~~~~~~~~~~---~~~~~f~i~~~~-~~~~~~a~s~~e~~~W~~aI~~ai   99 (103)
T d1eaza_          38 LEKEPLRVIPLKEVHKVQECKQSDIM---MRDNLFEIVTTS-RTFYVQADSPEEMHSWIKAVSGAI   99 (103)
T ss_dssp             TCSSCSEEEEGGGCCEEEECTTHHHH---TCSSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCcccceEEEccceEEeecccccccc---ccceEEEEEeCC-EEEEEEeCCHHHHHHHHHHHHHHH
Confidence            45678999999999877665544322   235799999886 489999999999999999998874

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.9e-05  Score=49.29  Aligned_cols=64  Identities=20%  Similarity=0.354  Sum_probs=48.4

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..+..++|+|.++...   +.+..-.........||.|-|+..+.|+|+|||+..++.|+..|..+.
T Consensus        39 ~~~~~~~~~i~l~~~~---~~~~~~~~~~~~~~~~f~i~~~~~~~~~f~a~s~~e~~~W~~ai~~~i  102 (106)
T d1u5da1          39 EKSKQPKGTFLIKGYS---VRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLL  102 (106)
T ss_dssp             TTCSSCSEEEECTTCE---EEECGGGCSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCce---EeeccccccccCCceeEEEEcCCCcEEEEEeCCHHHHHHHHHHHHHHH
Confidence            3466789999987542   333333344444567999999988899999999999999999987643

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.2e-05  Score=49.47  Aligned_cols=62  Identities=16%  Similarity=0.279  Sum_probs=46.1

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..|..++|.|.+.....+...+.    ...-...||-|.++.+ .|+|+|||+...+.|+.-|+.|.
T Consensus        37 ~~~~~~~~~i~l~~~~~~~~~~~----~~~~~~~~F~i~~~~r-~~~l~A~s~~e~~~Wi~aL~~Aa   98 (99)
T d2coca1          37 SQDGRLPRTIPLPSCKLSVPDPE----ERLDSGHVWKLQWAKQ-SWYLSASSAELQQQWLETLSTAA   98 (99)
T ss_dssp             TTCSSSCSEECGGGCEEECCCSS----SCCSSSEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred             Cccccccccccccceeeeecccc----cccCCceEEEEEcCCc-EEEEECCCHHHHHHHHHHHHHhc
Confidence            45778899998876643333221    2233468999988865 89999999999999999998763

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=97.90  E-value=1.7e-05  Score=49.59  Aligned_cols=58  Identities=12%  Similarity=0.277  Sum_probs=41.9

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            5 EPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         5 e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ...+.+.|.+.. .++...+.    .++ .-.||.|-++....|+|+|||+..++.|+..|++|
T Consensus        49 ~~~~~~~i~l~~-~~~~~~~~----~~~-~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          49 PYHSEVPVSLKE-AICEVALD----YKK-KKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             CSSSCCCEECTT-CEEEECSS----CCS-SSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             ccCcceeEEecc-ceeeeccc----ccc-CcceEeecccCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            345566666642 34444332    122 23799999999989999999999999999999865

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=1.7e-05  Score=55.29  Aligned_cols=62  Identities=13%  Similarity=0.191  Sum_probs=48.7

Q ss_pred             CcceeEEeecCceeeeeccccCC--------------------CCCCcceeEEeccccceeeEEeecChHHHHHHHHHHH
Q 043050            7 TVKGTITFDENSTIAISPVNFNG--------------------LPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (142)
Q Consensus         7 ~~rg~I~fda~sTvtiSpvNfhg--------------------~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlr   66 (142)
                      .++|.|.++..+.|.+.+..-.+                    .+.....||-|.|+.+ .|||||||....+.|++.||
T Consensus        50 ~~kG~I~L~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~t~~r-t~~l~A~s~eE~~~WI~aL~  128 (169)
T d1btka_          50 SKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEG-PLYVFSPTEELRKRWIHQLK  128 (169)
T ss_dssp             EEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEEEEEETTC-CEEEEESCHHHHHHHHHHHH
T ss_pred             CccceEeccceEEEEeecccCCCCccccccccccccccccccccccccCcceEEEeCCc-EEEEECCCHHHHHHHHHHHH
Confidence            58899999999988775532111                    1124578999999886 79999999999999999998


Q ss_pred             HHH
Q 043050           67 AAQ   69 (142)
Q Consensus        67 Aa~   69 (142)
                      .+.
T Consensus       129 ~~i  131 (169)
T d1btka_         129 NVI  131 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=2.5e-05  Score=48.72  Aligned_cols=57  Identities=12%  Similarity=0.109  Sum_probs=43.6

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            5 EPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         5 e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      +..++|.|.++.. +|...+.      .-..+||.|.++..+.|+|+|||+...+.|+..|+++
T Consensus        36 ~~~~~~~i~l~~~-~v~~~~~------~~~~~~f~~~~~~~~~~~l~A~s~~e~~~Wi~~L~~~   92 (95)
T d2cofa1          36 SKVAQQPLSLVGC-EVVPDPS------PDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSE   92 (95)
T ss_dssp             CSEEEEEECTTTC-EEECCCB------TTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccccccccccce-EEEeccc------ccceecceeccccceeEEeeCCCHHHHHHHHHHHHHH
Confidence            3457888877654 3433332      2245899999999999999999999999999999874

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.75  E-value=5.8e-06  Score=53.32  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=35.1

Q ss_pred             CCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050           29 GLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus        29 g~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ...+-..+||.|-++.+..|||+|||+...+.|+..|+++
T Consensus        78 ~~~~~~~~~~~l~~~~~~~~~f~a~s~~d~~~Wv~al~~~  117 (122)
T d1droa_          78 SDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQ  117 (122)
T ss_dssp             CSSSSSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHH
T ss_pred             cccccccceEEEECCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            3455566899999999899999999999999999999875

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=97.73  E-value=8.1e-06  Score=52.33  Aligned_cols=35  Identities=23%  Similarity=0.502  Sum_probs=32.0

Q ss_pred             cceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050           34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus        34 DgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..+||.|.++....|+|||||+...+.|+..|+.|
T Consensus        81 ~~~~f~i~~~~~~~~~l~a~s~~e~~~Wi~aI~~a  115 (123)
T d1wjma_          81 RKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAA  115 (123)
T ss_dssp             CSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence            34899999999999999999999999999999865

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=6.5e-05  Score=47.44  Aligned_cols=63  Identities=21%  Similarity=0.248  Sum_probs=47.2

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      ..+..++|.|.++....+..++.     ......||.|-++..+.|+|+++|+..+..|+..|+.+.-
T Consensus        39 ~~~~~p~~~i~l~~~~~~~~~~~-----~~~~~~~f~l~~~~~~~~~~~a~s~~e~~~Wi~ai~~ai~  101 (113)
T d1plsa_          39 KSDNSPKGMIPLKGSTLTSPCQD-----FGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIK  101 (113)
T ss_dssp             TTCSSCSEEEESSSCCEESSCCS-----SCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCccccceEEECccCeEEeeecc-----cCCcceEEEEecCCCeEEEEECCCHHHHHHHHHHHHHHHH
Confidence            45678899999988765544332     2233467777777778999999999999999999986543

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=2.2e-05  Score=50.75  Aligned_cols=34  Identities=32%  Similarity=0.630  Sum_probs=28.4

Q ss_pred             cceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050           34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus        34 DgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..+||-|-|+. +.|||+|||+...+.|+.-|+.|
T Consensus        85 ~~~~~~~~~~~-r~~~l~Aes~~e~~~Wi~aL~~A  118 (126)
T d1v5pa_          85 TPFCFVINALS-QRYFLQANDQKDLKDWVEALNQA  118 (126)
T ss_dssp             CSSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHT
T ss_pred             ccceEEEcCCC-eeEEEECCCHHHHHHHHHHHHHH
Confidence            44677777765 58999999999999999999754

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=8.9e-05  Score=46.83  Aligned_cols=56  Identities=25%  Similarity=0.353  Sum_probs=43.8

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ   69 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~   69 (142)
                      ..+..++|+|.+.....+...          +..||.|-+|.+ .|+|+|||+..+..|+..|+.+.
T Consensus        36 ~~~~~~~~~i~L~~~~~~~~~----------~~~~f~i~~~~~-~~~l~a~s~~e~~~Wi~ai~~~i   91 (102)
T d2coda1          36 EKEMYSKGIIPLSAISTVRVQ----------GDNKFEVVTTQR-TFVFRVEKEEERNDWISILLNAL   91 (102)
T ss_dssp             SCCSSCCCEEETTTEEEEEEE----------TTTEEEEEESSC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCcceeEEEEEchhceeeccc----------cceeEEEEcCCc-EEEEEeCCHHHHHHHHHHHHHHH
Confidence            356789999999865444332          235999999865 89999999999999999997653

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=3.3e-05  Score=48.53  Aligned_cols=68  Identities=15%  Similarity=0.139  Sum_probs=42.5

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccc---eeeEEeecChHHHHHHHHHHHHHHHHHHHh
Q 043050            5 EPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQK---KDYFLCAETPGAARAWVSTLHAAQLVLKAH   75 (142)
Q Consensus         5 e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~k---k~yfLcAETp~aAraWv~tlrAa~lVlkAH   75 (142)
                      +..++|.|.++....+.+.++.-..   ...-||.|.++..   .+|+|||||+.....|+..|+.+...++..
T Consensus        44 ~~~~~~~i~l~~~~~~~~~~~~~~~---~~~~~f~i~~~~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~~~~~  114 (118)
T d1unqa_          44 QDVDQREAPLNNFSVAQCQLMKTER---PRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKKQ  114 (118)
T ss_dssp             CSHHHHTSCSEEEECTTCEEEEECS---SSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccccccceEEeecccccccc---cCCceEEEEeccccceeEEEEEeCCHHHHHHHHHHHHHHHHHhhcc
Confidence            3445566655433222222222222   2235888866533   468899999999999999999877666553

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.0002  Score=44.63  Aligned_cols=55  Identities=13%  Similarity=0.195  Sum_probs=39.4

Q ss_pred             CCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHH
Q 043050            5 EPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH   66 (142)
Q Consensus         5 e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlr   66 (142)
                      +..+.|+|.+..-..+  .+..-    .-..+||-|.|+.+ -|+|+|||+...+.|+.-|+
T Consensus        46 ~~~~~~~i~l~~~~~~--~~~~~----~~~~~~f~i~t~~r-~~~l~A~s~~e~~~Wi~al~  100 (103)
T d1qqga1          46 SSAPKRSIPLESCFNI--NKRAD----SKNKHLVALYTRDE-HFAIAADSEAEQDSWYQALL  100 (103)
T ss_dssp             CSCCSEEEEGGGEEEE--EEECC----SSCSSEEEEEESSC-EEEEECSSHHHHHHHHHHHH
T ss_pred             cccccceEecceeeEE--eeccc----CCCceEEEEEeCCe-EEEEEcCCHHHHHHHHHHHH
Confidence            4557788877544333  22222    22348999999865 69999999999999999876

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.36  E-value=0.00019  Score=47.14  Aligned_cols=62  Identities=18%  Similarity=0.278  Sum_probs=46.1

Q ss_pred             CCcceeEEeecCceeeeecc--cc--CCCCCCcceeEEecc-ccceeeEEeecChHHHHHHHHHHHH
Q 043050            6 PTVKGTITFDENSTIAISPV--NF--NGLPKYDGCCFYIGT-PQKKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus         6 ~~~rg~I~fda~sTvtiSpv--Nf--hg~~kyDgCCfYIgt-~~kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      .+.+|.|.+++-..|..-..  .|  .+.+....|||-|.. ..++.++|+|+|+..++.|+..|++
T Consensus        50 ~~~~~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~~FsIv~~~~~r~l~l~a~s~~~~~~Wv~~L~~  116 (119)
T d1maia_          50 SPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRK  116 (119)
T ss_dssp             CTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHH
T ss_pred             CccceEEEHHHceEEEcCCCCchhhhcccCCCcCceEEEEEcCCCcEEEEEECCHHHHHHHHHHHHH
Confidence            44578898888877766322  11  134556789999963 4456899999999999999999975

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00045  Score=43.40  Aligned_cols=62  Identities=18%  Similarity=0.244  Sum_probs=45.2

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccc-------eeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQK-------KDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~k-------k~yfLcAETp~aAraWv~tlrAa   68 (142)
                      ..+..++|.|.++....+.+.+....+ ..   -||=|-++..       +.|+||||++...+.|+..|+.|
T Consensus        42 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~---~~f~l~~~~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a  110 (118)
T d1v89a_          42 EEDTKPQGCMYLPGCTIKEIATNPEEA-GK---FVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRV  110 (118)
T ss_dssp             SSCCSCSEEECSTTEEEEEECCCSSCC-CC---CEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             cCcccccceeccCceEEEEeccccccC-CC---cEEEEecCCCcceecCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence            456778999999987666555443222 22   3677766642       45899999999999999999875

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=0.00056  Score=42.85  Aligned_cols=59  Identities=7%  Similarity=0.121  Sum_probs=44.9

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .+..+++.|.+.....+.+.      .......||-|-++..+.|+|++||+..++.|+..|+.|
T Consensus        43 ~~~~~~~~i~l~~~~~~~~~------~~~~~~~~F~i~~~~~~~~~f~a~s~~~~~~Wi~ai~~a  101 (109)
T d1wgqa_          43 EDVAALESQPLLGFTVTLVK------DENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG  101 (109)
T ss_dssp             TCSSCSEEEECSSEEEEECC------CSSCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccccccccccceeeeeecc------cccccceeeeeecccceEEEEECCCHHHHHHHHHHHHHH
Confidence            45667888877654432222      334456899998888888999999999999999999875

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00046  Score=46.21  Aligned_cols=60  Identities=8%  Similarity=0.155  Sum_probs=43.7

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .+|..+.|.|.+-....++..     ...+-...||.|-||.+ .|+|+|||+.....|+..|+.+
T Consensus        45 ~~d~~~~~~i~L~~~~~~~~~-----~~~~~~~~~F~i~~~~~-~~~f~Aes~~e~~~Wi~~I~~v  104 (136)
T d1x1fa1          45 KKSIIYVDKLDIVDLTCLTEQ-----NSTEKNCAKFTLVLPKE-EVQLKTENTESGEEWRGFILTV  104 (136)
T ss_dssp             SSCSSCSEECCCSSCCEEEEC-----CCTTSCCCEEEEECSSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccccccccccccceeeeeee-----cccccccceeeecCCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence            356677788777555444432     12233458999999876 6999999999999999999764

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0006  Score=44.56  Aligned_cols=55  Identities=20%  Similarity=0.281  Sum_probs=38.0

Q ss_pred             CcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            7 TVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         7 ~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .+.|.|.++. .+|.+.+.     .+-...||.|-+|.. .|+|+|||+..+..|+..|+.+
T Consensus        53 ~~~~~i~L~~-~~v~~~~~-----~~~r~~~F~i~~~~~-~~~f~A~s~~e~~~Wi~ai~~a  107 (133)
T d2j59m1          53 EEEQPISVNA-CLIDISYS-----ETKRKNVFRLTTSDC-ECLFQAEDRDDMLAWIKTIQES  107 (133)
T ss_dssp             ----CEECSS-CEEEECSS-----SCSCSSEEEEECSSC-EEEEECSSHHHHHHHHHHHHHH
T ss_pred             cccccceecc-eEEEEccc-----ccccCceeEEecCCC-EEEEEeCCHHHHHHHHHHHHHH
Confidence            4677888775 45554432     111247999999886 7999999999999999999754

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00038  Score=44.60  Aligned_cols=60  Identities=23%  Similarity=0.422  Sum_probs=37.9

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccc-----------------------cceeeEEeecChHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTP-----------------------QKKDYFLCAETPGAAR   59 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~-----------------------~kk~yfLcAETp~aAr   59 (142)
                      ..+..++|.|.++..+ |...|.+-      +.=||-|.+|                       +..-|+|+|||+...+
T Consensus        41 ~~~~~~~g~i~L~~~~-v~~~~~~~------~~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~A~s~~e~~  113 (130)
T d1v88a_          41 QKNGQWVGTVLLNACE-IIERPSKK------DGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGR  113 (130)
T ss_dssp             SSSCCCCEEEECSSCE-ECCCCTTT------SSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHH
T ss_pred             CCCCcceeEEECCCeE-EEEccccC------CCceEEEEcCCCcceecccCcccccceeEEecCCcEEEEEECCCHHHHH
Confidence            3467889999998643 33333221      1224444332                       2223568999999999


Q ss_pred             HHHHHHHHHH
Q 043050           60 AWVSTLHAAQ   69 (142)
Q Consensus        60 aWv~tlrAa~   69 (142)
                      .|+..|+.+.
T Consensus       114 ~Wi~al~~~i  123 (130)
T d1v88a_         114 CWMDALELAL  123 (130)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987653

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00022  Score=45.17  Aligned_cols=58  Identities=19%  Similarity=0.323  Sum_probs=39.2

Q ss_pred             CCCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccc-eeeEEeecChHHHHHHHHHHHH
Q 043050            3 RNEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus         3 r~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~k-k~yfLcAETp~aAraWv~tlrA   67 (142)
                      +.|..+++.|.++. .+|..++.      +-...||.|-++.. +.|+|+|||......|+..|+-
T Consensus        41 ~~~~~~~~~i~l~~-~~v~~~~~------~~~~~~f~i~~~~~~~~~~l~A~s~~e~~~Wi~al~~   99 (101)
T d2elba2          41 RGDVAGGLAMDIDN-CSVMAVDC------EDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINN   99 (101)
T ss_dssp             TTCCCE----EEEE-CCCCCCCC------CCSSSSSEECCCSSSCCCCEECSSHHHHHHHHHHHHH
T ss_pred             cCCcccceEEEecc-cccccccc------cCCcceEEEEeecccceEEEECCCHHHHHHHHHHHHh
Confidence            45667888888864 44544432      22345899988864 5799999999999999998864

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.00071  Score=43.37  Aligned_cols=60  Identities=17%  Similarity=0.187  Sum_probs=42.5

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEecccc-------ceeeEEeecChHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQ-------KKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~-------kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .+..++|.|.++.. +|...+.+-.+.    --||-|-+|.       .+.|+|||||+.....|++.|+.|
T Consensus        40 ~~~~~~~~i~l~~~-~v~~~~~~~~~~----~~~F~l~~~~~~~~~~~~r~~~l~a~s~ed~~~W~~al~~A  106 (111)
T d2dyna_          40 EEKEKKYMLSVDNL-KLRDVEKGFMSS----KHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA  106 (111)
T ss_dssp             TCCCEEEEEECTTE-EEEEECCCSTTC----SEEEEEEESSCSCSBTTBSSEEEEESSHHHHHHHHHHHHHT
T ss_pred             hhcccccccccccc-eeEeeccccccc----cccEEeeeccccccccCceeEEEECCCHHHHHHHHHHHHHh
Confidence            35678999998764 343333332222    2489887663       357999999999999999999764

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.0016  Score=40.93  Aligned_cols=65  Identities=14%  Similarity=0.203  Sum_probs=40.1

Q ss_pred             CCCCcceeEEeecCceeeeeccc---------------cCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVN---------------FNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvN---------------fhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .+..++|.|.++..+-+.+.+.+               .....+...+++-+ ......|+|||||....+.|+..|+++
T Consensus        40 ~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~a~s~~e~~~Wi~aL~~~  118 (127)
T d1fgya_          40 TDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVV-EGNHVVYRISAPSPEEKEEWMKSIKAS  118 (127)
T ss_dssp             TCSSCSEEEECTTCEEEEECCSSCSSEEEEECSSSTTCCCCCEEECTTSCEE-ECCCSEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCccccceEeCCCeEEEEccCCCCCceEEEeccccccccccccccccceeEe-eCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence            56678999988875443332211               11111222233322 233446999999999999999999886


Q ss_pred             H
Q 043050           69 Q   69 (142)
Q Consensus        69 ~   69 (142)
                      .
T Consensus       119 i  119 (127)
T d1fgya_         119 I  119 (127)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0076  Score=42.35  Aligned_cols=53  Identities=21%  Similarity=0.501  Sum_probs=40.2

Q ss_pred             CCCCcceeEEeecCceeeeeccccCCCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050            4 NEPTVKGTITFDENSTIAISPVNFNGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus         4 ~e~~~rg~I~fda~sTvtiSpvNfhg~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .+..++|.|.+.....+...          +.+||-|.||.+ -|+|+++. ..+..||..|+..
T Consensus        81 ~~~~~kG~I~L~~~~~v~~~----------~~~~F~I~t~~R-ty~l~a~~-~d~~~Wv~aI~~v  133 (147)
T d1w1ha_          81 VNKVLKGEIPWSQELRPEAK----------NFKTFFVHTPNR-TYYLMDPS-GNAHKWCRKIQEV  133 (147)
T ss_dssp             TTTEEEEEECCCTTCEEEEE----------ETTEEEEECSSC-EEEEECTT-SCHHHHHHHHHHH
T ss_pred             CcccccceEEeccccccccc----------cCceEEEecCce-EEEEEcCh-HHHHHHHHHHHHH
Confidence            45678999999876655432          356999999876 78888865 5689999999643

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.25  E-value=0.013  Score=39.14  Aligned_cols=39  Identities=13%  Similarity=0.232  Sum_probs=33.0

Q ss_pred             CCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHH
Q 043050           30 LPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus        30 ~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      .....-+||-|..|.++.|+|+|+|+..-+.|+..|+.+
T Consensus        86 ~~~~~~~~f~i~~~~~~~~~l~a~s~eek~~Wv~~L~~~  124 (132)
T d1v61a_          86 EIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRL  124 (132)
T ss_dssp             SSSSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHH
T ss_pred             cccCccceEEEeCCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence            344556899999887778999999999999999999743

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.69  E-value=0.031  Score=35.43  Aligned_cols=37  Identities=19%  Similarity=0.263  Sum_probs=31.4

Q ss_pred             eeEEeccccceeeEEeecChHHHHHHHHHHHHHHHHHH
Q 043050           36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLK   73 (142)
Q Consensus        36 CCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~lVlk   73 (142)
                      -||.|.++.+ .|.|+|+|+..-..|+..|+.|...++
T Consensus        70 n~f~i~~~~~-~~~~~a~s~~eK~~W~~~l~~a~~~~~  106 (109)
T d1zc3b1          70 DMFKLLMFPE-SRIFQAENAKIKREWLEVLEETKRALS  106 (109)
T ss_dssp             SEEEEEETTE-EEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEccCCC-EEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence            5799988875 799999999999999999988765543

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.14  Score=32.75  Aligned_cols=53  Identities=15%  Similarity=0.227  Sum_probs=39.1

Q ss_pred             ceeeeeccccCCCCCCcceeEEecc----ccceeeEEeecChHHHHHHHHHHHHHHH
Q 043050           18 STIAISPVNFNGLPKYDGCCFYIGT----PQKKDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus        18 sTvtiSpvNfhg~~kyDgCCfYIgt----~~kk~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      ..+.++.+.+.-..+.+.++|-|-.    ...+.|-|+|+||..=+.|+.+||.+..
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~l~a~s~~eK~~W~~~I~~~i~  118 (121)
T d1ntya2          62 SKLFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQ  118 (121)
T ss_dssp             EEEEGGGEEEECCCTTCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eeEEecceEEEEcCCCCCceEEEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHH
Confidence            3455666666666777889998832    1334578999999999999999987653

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.65  E-value=0.13  Score=34.01  Aligned_cols=43  Identities=30%  Similarity=0.349  Sum_probs=31.6

Q ss_pred             CCCCCcceeEEeccccceeeEEeecChHHHHHHHHHHHHHHHHH
Q 043050           29 GLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVL   72 (142)
Q Consensus        29 g~~kyDgCCfYIgt~~kk~yfLcAETp~aAraWv~tlrAa~lVl   72 (142)
                      ..+.+....|++..+++ .|.|+|+|+..-..|+..|+.|+...
T Consensus        92 ~d~~~~~~~~~~~~~~~-~~~l~a~s~~ek~~W~~~I~~Ai~~~  134 (142)
T d1ki1b2          92 TDPSGDEPIFHISHIDR-VYTLRAESINERTAWVQKIKAASELY  134 (142)
T ss_dssp             SSSCCC---CEEEETTE-EEECBCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccceeEEEecCCCE-EEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence            34555667788877665 69999999999999999998766543

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.13  Score=35.29  Aligned_cols=36  Identities=11%  Similarity=0.121  Sum_probs=28.9

Q ss_pred             CCcceeEEe--cccc--ceeeEEeecChHHHHHHHHHHHH
Q 043050           32 KYDGCCFYI--GTPQ--KKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus        32 kyDgCCfYI--gt~~--kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      -...+||-|  |+..  -+-+.|+|.|+..|+.|+..|++
T Consensus        83 ~~e~~~ftIvyg~~~v~l~~l~lVA~s~~~a~~W~~gL~~  122 (131)
T d2zkmx3          83 SFLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLA  122 (131)
T ss_dssp             CGGGTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHH
T ss_pred             CccccEEEEEECCCcccceEEEEEeCCHHHHHHHHHHHHH
Confidence            357899999  4333  35666999999999999999987

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.84  E-value=0.23  Score=32.24  Aligned_cols=31  Identities=16%  Similarity=0.350  Sum_probs=27.2

Q ss_pred             eEEeccccceeeEEeecChHHHHHHHHHHHH
Q 043050           37 CFYIGTPQKKDYFLCAETPGAARAWVSTLHA   67 (142)
Q Consensus        37 CfYIgt~~kk~yfLcAETp~aAraWv~tlrA   67 (142)
                      ||.|-++.+..|.|.|+|+..-+.|+..|+.
T Consensus        96 ~f~i~~~~~~~~~l~a~s~~eK~~W~~~l~~  126 (133)
T d1dbha2          96 AFEIILKDENSVIFSAKSAEEKNNWMAALIS  126 (133)
T ss_dssp             EEEECCTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred             ceeEEcCCCcEEEEEECCHHHHHHHHHHHHH
Confidence            5888777777789999999999999999975

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.40  E-value=1.4  Score=29.39  Aligned_cols=48  Identities=25%  Similarity=0.382  Sum_probs=35.8

Q ss_pred             eeeeccccCCCCCCcceeEEe--ccccceeeEEeecChHHHHHHHHHHHHH
Q 043050           20 IAISPVNFNGLPKYDGCCFYI--GTPQKKDYFLCAETPGAARAWVSTLHAA   68 (142)
Q Consensus        20 vtiSpvNfhg~~kyDgCCfYI--gt~~kk~yfLcAETp~aAraWv~tlrAa   68 (142)
                      +.++.+.+-...+-|.|.|.|  +.| ..-|.|.|.||..=..|+.+|+.+
T Consensus        77 ~~~~~~~v~~~~~~~~~~f~~~~~~~-~~~~~l~a~s~eeK~~W~~~I~~~  126 (147)
T d1kz7a2          77 LNMTAVGITENVKGDTKKFEIWYNAR-EEVYIIQAPTPEIKAAWVNAIRKV  126 (147)
T ss_dssp             EEGGGEEEECCBTTBTTEEEEEETTT-TEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             EecCCceeEecCCCCcceEEEEeCCC-CcEEEEEeCCHHHHHHHHHHHHHH
Confidence            444555555566677888877  444 457889999999999999999863

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.23  E-value=2.8  Score=27.80  Aligned_cols=34  Identities=9%  Similarity=0.225  Sum_probs=27.2

Q ss_pred             eEEeccc-cceeeEEeecChHHHHHHHHHHHHHHH
Q 043050           37 CFYIGTP-QKKDYFLCAETPGAARAWVSTLHAAQL   70 (142)
Q Consensus        37 CfYIgt~-~kk~yfLcAETp~aAraWv~tlrAa~l   70 (142)
                      ||.|-.+ ..+-|.|+|+||..=+.|+..||.+..
T Consensus        99 ~f~i~~~~~~~~~~~~A~s~~eK~~W~~~l~~~~~  133 (162)
T d2dfka2          99 AFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERK  133 (162)
T ss_dssp             EEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            6888543 344588899999999999999998743