Citrus Sinensis ID: 043061

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
FSSYQGDRFVTTRDQYRRFGSPIWVDSESETTLMRLYGRASAPASSTKIVNVDDFEAKADGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKTWQ
ccccccccEEEEccccccccccccccccHHHHHHHHHccccccccccEEEEEEcccccccccccHHHHHHHHHHHHccccccEEEEccccEEEEEcEEEEccccccEEEEEEEEEEEEcccccccccccccEEEEEEccEEEEEcEEEcccccHHHHccccccccEEEEEEEEEcEEEEEEEEEccccEEEEEEcEEEEEEEEEEEEcccccccccEEEccccccEEEEEEEEEccccEEEEccccEEEEEEEEEEccccEEEEcccccccccccEEEEEEEEEEEEcccccEEEEEEc
ccccccccccccccccccccccEEEEccccccEHccccccccccccccEEEEHcccccccccccHHHHHHHHHHHHccccccEEEEccccEEEEEEEEEEccccccEEEEEEEEEEccccHHHccccccEEEEEEEEccEEEEEcEEEcccccHHccccccccccEEEEEEEcccEEEEEEEEEEcccEEEEEEcccEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEccc
fssyqgdrfvttrdqyrrfgspiwvdseseTTLMRLYgrasapasstkivnvddfeakadgtddsKAFMEAWEEACSSEneavlvvpnnkiyhlkpitfsgpcksdltMKIYGTIKASvrlsdysrdprhwLVFENVnnfrvegggtidgngkVWWRKSCKVNKSLAVTFYGcknvrvsslrfrnsqkmhLTFQYCVNVRALNLLViapgnspntdgihvtgTQNILIKNCvirtgddcisivsgsknvratdiicgpghgisigslgagnseAFVSNVLVNRarlsgttngvriktwq
fssyqgdrfvttrdqyrrfgspiwvdseseTTLMRLYGrasapasstkivnvdDFEAKADGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFenvnnfrvegggtidgngkvWWRKSCKVNKSLAvtfygcknvrvSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVnrarlsgttngvriktwq
FSSYQGDRFVTTRDQYRRFGSPIWVDSESETTLMRLYGRASAPASSTKIVNVDDFEAKADGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKTWQ
********FVTTRDQYRRFGSPIWVDSE*ETTLMRLYG*****************************FMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGV******
*******RFV***************DSESETTLMRLYGRASAPASSTKIVNVDDFEAKADGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKTWQ
FSSYQGDRFVTTRDQYRRFGSPIWVDSESETTLMRLYGRASAPASSTKIVNVDDFEAKADGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTN********
**SYQGDRFVTTRDQYRRFGSPIWVDSESETTLMRLYGRASAPASSTKIVNVDDFEAKADGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKTWQ
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
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FSSYQGDRFVTTRDQYRRFGSPIWVDSESETTLMRLYGRASAPASSTKIVNVDDFEAKADGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKTWQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query299 2.2.26 [Sep-21-2011]
Q9SFB7 439 Polygalacturonase QRT2 OS yes no 0.859 0.585 0.665 9e-98
P35336 467 Polygalacturonase OS=Acti N/A no 0.846 0.541 0.666 5e-97
P48978 460 Polygalacturonase OS=Malu N/A no 0.852 0.554 0.582 3e-82
Q02096 462 Polygalacturonase OS=Pers N/A no 0.889 0.575 0.579 7e-81
P05117 457 Polygalacturonase-2 OS=So N/A no 0.839 0.549 0.584 5e-78
Q8RY29 433 Polygalacturonase ADPG2 O no no 0.939 0.648 0.513 4e-75
O23147 431 Polygalacturonase ADPG1 O no no 0.832 0.577 0.503 2e-70
Q94AJ5 444 Probable polygalacturonas no no 0.882 0.594 0.465 3e-64
Q7M1E7 514 Polygalacturonase OS=Cham N/A no 0.919 0.535 0.415 3e-54
Q9LW07 456 Probable polygalacturonas no no 0.842 0.552 0.412 3e-52
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function desciption
 Score =  356 bits (914), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 177/266 (66%), Positives = 209/266 (78%), Gaps = 9/266 (3%)

Query: 42  APASSTKIVNVDDFEAKADGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSG 101
           AP SS +  NV+ F AKA+G DDSKAFM+AWE ACSS     +V P N+ Y LK +TFSG
Sbjct: 63  APRSSPRSFNVNTFGAKANGNDDSKAFMKAWEAACSSTGIVYIVAPKNRDYMLKAVTFSG 122

Query: 102 PCKSDLTM-KIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSC 160
           PCKS L + KIYG I+A    SDY ++ RHW+VFENVNN RVEGGG IDGNG +WW KSC
Sbjct: 123 PCKSSLIIFKIYGRIEAWENPSDY-KERRHWIVFENVNNLRVEGGGRIDGNGHIWWPKSC 181

Query: 161 KVNKSL-------AVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSP 213
           K+N  L       AVTF  C N+RVS++R  N+Q+MHLTFQ C NV+ALNL+V +P +SP
Sbjct: 182 KINPQLPCLGAPTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSP 241

Query: 214 NTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSE 273
           NTDGIHV+GTQNILI++ ++RTGDDCISIVSGS+NVRAT I CGPGHGISIGSLG  NSE
Sbjct: 242 NTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGISIGSLGEDNSE 301

Query: 274 AFVSNVLVNRARLSGTTNGVRIKTWQ 299
           A+VSNV+VN+A L GTTNGVRIKTWQ
Sbjct: 302 AYVSNVVVNKATLIGTTNGVRIKTWQ 327
Polygalacturonase required for cell type-specific pectin degradation to separate microspores. Involved in anther dehiscence and floral organ abscission.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1 Back     alignment and function description
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
224104077376 predicted protein [Populus trichocarpa] 0.862 0.686 0.758 1e-115
255553564 446 Polygalacturonase precursor, putative [R 0.872 0.585 0.738 1e-113
449436309 458 PREDICTED: polygalacturonase QRT2-like [ 0.882 0.576 0.654 1e-100
3320462 461 polygalacturonase precursor [Cucumis mel 0.936 0.607 0.625 2e-99
449464038 435 PREDICTED: polygalacturonase-like [Cucum 0.913 0.627 0.648 1e-98
449512834 604 PREDICTED: polygalacturonase-like [Cucum 0.913 0.451 0.641 2e-98
297829364 439 predicted protein [Arabidopsis lyrata su 0.859 0.585 0.669 1e-96
6648209 438 putative polygalacturonase [Arabidopsis 0.859 0.586 0.664 2e-96
7959983 463 polygalacturonase A [Actinidia chinensis 0.846 0.546 0.662 3e-96
22330914 439 Polygalacturonase QRT2 [Arabidopsis thal 0.859 0.585 0.665 5e-96
>gi|224104077|ref|XP_002313308.1| predicted protein [Populus trichocarpa] gi|222849716|gb|EEE87263.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 201/265 (75%), Positives = 227/265 (85%), Gaps = 7/265 (2%)

Query: 42  APASSTKIVNVDDFEAKADGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSG 101
           AP SS K+VNVDDF AKADGTDDS+AF +AWEEACSS+  A++V+P NKIY+LKP+TFSG
Sbjct: 1   APVSSAKVVNVDDFGAKADGTDDSQAFKKAWEEACSSKGSAIIVIPKNKIYYLKPVTFSG 60

Query: 102 PCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCK 161
           PC+SDL  KI+GTIKAS ++SDY  D RHWLVFENV NFRV GGGTIDGNGK+WW  SCK
Sbjct: 61  PCESDLVFKIFGTIKASAKVSDYENDRRHWLVFENVQNFRVRGGGTIDGNGKIWWENSCK 120

Query: 162 VNKS-------LAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPN 214
           +NKS        AVTF  CK++ V++LRF+N+Q+MHL+FQ CVNVRALNL+VIAPG SPN
Sbjct: 121 INKSQPCQHAPTAVTFLECKSLIVANLRFQNAQQMHLSFQNCVNVRALNLMVIAPGTSPN 180

Query: 215 TDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEA 274
           TDGIHVTGTQNI I+NCVIRTGDDCISIVSGSKNV ATDI CGPGHGISIGSLGA NS A
Sbjct: 181 TDGIHVTGTQNIRIRNCVIRTGDDCISIVSGSKNVEATDITCGPGHGISIGSLGADNSGA 240

Query: 275 FVSNVLVNRARLSGTTNGVRIKTWQ 299
            VSNV VNRA +SGTTNGVRIKTWQ
Sbjct: 241 EVSNVFVNRATISGTTNGVRIKTWQ 265

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255553564|ref|XP_002517823.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223543095|gb|EEF44630.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449436309|ref|XP_004135935.1| PREDICTED: polygalacturonase QRT2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|3320462|gb|AAC26512.1| polygalacturonase precursor [Cucumis melo] Back     alignment and taxonomy information
>gi|449464038|ref|XP_004149736.1| PREDICTED: polygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449512834|ref|XP_004164154.1| PREDICTED: polygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297829364|ref|XP_002882564.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297328404|gb|EFH58823.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|6648209|gb|AAF21207.1|AC013483_31 putative polygalacturonase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7959983|gb|AAF71160.1|AF152758_1 polygalacturonase A [Actinidia chinensis] Back     alignment and taxonomy information
>gi|22330914|ref|NP_187454.2| Polygalacturonase QRT2 [Arabidopsis thaliana] gi|226736750|sp|Q9SFB7.2|QRT2_ARATH RecName: Full=Polygalacturonase QRT2; Short=AtQRT2; Short=PG QRT2; AltName: Full=Pectinase QRT2; AltName: Full=Protein QUARTET 2; Flags: Precursor gi|332641105|gb|AEE74626.1| Polygalacturonase QRT2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query299
TAIR|locus:2077407 439 QRT2 "QUARTET 2" [Arabidopsis 0.859 0.585 0.665 5e-92
TAIR|locus:2054396 433 PGAZAT "polygalacturonase absc 0.939 0.648 0.513 5.7e-75
TAIR|locus:2103478 431 ADPG1 [Arabidopsis thaliana (t 0.832 0.577 0.503 1.9e-67
TAIR|locus:2016314 444 AT1G80170 [Arabidopsis thalian 0.906 0.610 0.469 1.6e-61
TAIR|locus:2026795 468 AT1G70500 [Arabidopsis thalian 0.909 0.581 0.448 9e-61
TAIR|locus:2028844 460 AT1G23460 [Arabidopsis thalian 0.943 0.613 0.420 5.1e-58
TAIR|locus:2128023 394 AT4G35670 [Arabidopsis thalian 0.836 0.634 0.439 3.5e-52
TAIR|locus:2222657 435 AT5G14650 [Arabidopsis thalian 0.869 0.597 0.404 9.2e-52
TAIR|locus:2093212 456 AT3G15720 [Arabidopsis thalian 0.842 0.552 0.412 2.4e-51
TAIR|locus:2167185 421 AT5G17200 [Arabidopsis thalian 0.839 0.596 0.425 3.1e-51
TAIR|locus:2077407 QRT2 "QUARTET 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 177/266 (66%), Positives = 209/266 (78%)

Query:    42 APASSTKIVNVDDFEAKADGTDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSG 101
             AP SS +  NV+ F AKA+G DDSKAFM+AWE ACSS     +V P N+ Y LK +TFSG
Sbjct:    63 APRSSPRSFNVNTFGAKANGNDDSKAFMKAWEAACSSTGIVYIVAPKNRDYMLKAVTFSG 122

Query:   102 PCKSDLTM-KIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSC 160
             PCKS L + KIYG I+A    SDY ++ RHW+VFENVNN RVEGGG IDGNG +WW KSC
Sbjct:   123 PCKSSLIIFKIYGRIEAWENPSDY-KERRHWIVFENVNNLRVEGGGRIDGNGHIWWPKSC 181

Query:   161 KVNKSL-------AVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSP 213
             K+N  L       AVTF  C N+RVS++R  N+Q+MHLTFQ C NV+ALNL+V +P +SP
Sbjct:   182 KINPQLPCLGAPTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSP 241

Query:   214 NTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSE 273
             NTDGIHV+GTQNILI++ ++RTGDDCISIVSGS+NVRAT I CGPGHGISIGSLG  NSE
Sbjct:   242 NTDGIHVSGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGISIGSLGEDNSE 301

Query:   274 AFVSNVLVNRARLSGTTNGVRIKTWQ 299
             A+VSNV+VN+A L GTTNGVRIKTWQ
Sbjct:   302 AYVSNVVVNKATLIGTTNGVRIKTWQ 327
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS;IDA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0009830 "cell wall modification involved in abscission" evidence=TAS
GO:0009901 "anther dehiscence" evidence=IMP
GO:0010047 "fruit dehiscence" evidence=IMP
GO:0048235 "pollen sperm cell differentiation" evidence=IMP
GO:0045490 "pectin catabolic process" evidence=IMP
TAIR|locus:2054396 PGAZAT "polygalacturonase abscission zone A. thaliana" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103478 ADPG1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016314 AT1G80170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028844 AT1G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128023 AT4G35670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222657 AT5G14650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093212 AT3G15720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167185 AT5G17200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1.150.914
3rd Layer3.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
PLN02218 431 PLN02218, PLN02218, polygalacturonase ADPG 1e-100
PLN02793 443 PLN02793, PLN02793, Probable polygalacturonase 2e-97
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 5e-79
PLN02188 404 PLN02188, PLN02188, polygalacturonase/glycoside hy 2e-66
PLN03003 456 PLN03003, PLN03003, Probable polygalacturonase At3 6e-65
PLN03010 409 PLN03010, PLN03010, polygalacturonase 3e-63
PLN02155 394 PLN02155, PLN02155, polygalacturonase 2e-57
COG5434 542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-22
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 3e-07
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information 
 Score =  299 bits (767), Expect = e-100
 Identities = 153/295 (51%), Positives = 204/295 (69%), Gaps = 13/295 (4%)

Query: 15  QYRRFGSPIWVDSESETTLMRLYGRASAPASSTKIVNVDDFEAKADG-TDDSKAFMEAWE 73
            Y+RF S   +    + T +R + RAS    +T  V+V DF AK DG TDD++AF+ AW+
Sbjct: 35  SYKRFKSDSLIKRNDDITGLRSFVRASLRTPTT--VSVSDFGAKGDGKTDDTQAFVNAWK 92

Query: 74  EACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLV 133
           +ACSS     L+VP    Y LK I  +GPCKS  T++I+GT+ AS + SDY +D   W++
Sbjct: 93  KACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQKRSDY-KDISKWIM 151

Query: 134 FENVNNFRVEGGGT--IDGNGKVWWRKSCKVNKS-------LAVTFYGCKNVRVSSLRFR 184
           F+ VNN  V+GG T  +DGNG+ WW+ SCK NK+        A+TFY  K++ V +LR R
Sbjct: 152 FDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVR 211

Query: 185 NSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVS 244
           N+Q++ ++ + C NV+  N++V AP +SPNTDGIH+T TQNI + N +I TGDDCISI S
Sbjct: 212 NAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIES 271

Query: 245 GSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKTWQ 299
           GS+NV+  DI CGPGHGISIGSLG  NS+AFVS V V+ A+LSGT NGVRIKT+Q
Sbjct: 272 GSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ 326

Length = 431
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 299
PLN02218 431 polygalacturonase ADPG 100.0
PLN02793 443 Probable polygalacturonase 100.0
PLN02155 394 polygalacturonase 100.0
PLN03003 456 Probable polygalacturonase At3g15720 100.0
PLN03010 409 polygalacturonase 100.0
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.94
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.91
PLN02793 443 Probable polygalacturonase 99.71
PLN03003 456 Probable polygalacturonase At3g15720 99.71
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.69
PLN02218431 polygalacturonase ADPG 99.67
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 99.66
PLN02155394 polygalacturonase 99.65
PLN03010409 polygalacturonase 99.63
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.63
PF03718 582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.51
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.25
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 99.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.89
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.8
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.78
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.73
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.64
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.59
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.56
smart00656190 Amb_all Amb_all domain. 98.52
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.44
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.41
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.29
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.2
smart00656190 Amb_all Amb_all domain. 98.09
PLN02480343 Probable pectinesterase 98.03
PLN02773317 pectinesterase 98.0
PRK10531422 acyl-CoA thioesterase; Provisional 97.95
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 97.94
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 97.84
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.77
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 97.77
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 97.76
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.76
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.75
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.75
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 97.74
PLN02682369 pectinesterase family protein 97.73
PLN02665366 pectinesterase family protein 97.71
PLN02671359 pectinesterase 97.71
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 97.69
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 97.69
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.68
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.66
PLN02197588 pectinesterase 97.66
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 97.64
PLN02916 502 pectinesterase family protein 97.63
PLN02432293 putative pectinesterase 97.63
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 97.62
PLN02634359 probable pectinesterase 97.56
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.55
PLN02301548 pectinesterase/pectinesterase inhibitor 97.54
PLN02314586 pectinesterase 97.52
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.52
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 97.49
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.47
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 97.46
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 97.43
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.4
PLN02497331 probable pectinesterase 97.39
PLN02176340 putative pectinesterase 97.38
PLN02304379 probable pectinesterase 97.36
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.27
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.0
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 96.79
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 96.57
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 96.2
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.94
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 95.02
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 94.98
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 94.84
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 92.16
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 91.17
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 88.75
PLN02773317 pectinesterase 85.68
PRK09752 1250 adhesin; Provisional 85.02
PLN02480343 Probable pectinesterase 84.58
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 82.72
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 81.68
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 80.7
>PLN02218 polygalacturonase ADPG Back     alignment and domain information 
Probab=100.00  E-value=1.4e-65  Score=483.69  Aligned_cols=257  Identities=55%  Similarity=0.965  Sum_probs=241.1

Q ss_pred             CCCCCCeEEEeecCCCCCCC-cccHHHHHHHHHHHhhcCCccEEEecCCeeEEeeeeeeeCCCccceEEEEeeEEEEeec
Q 043061           42 APASSTKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYGTIKASVR  120 (299)
Q Consensus        42 ~~~~~~~~~~v~d~Ga~gdg-~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g~l~~~~~  120 (299)
                      .+..++++++|+||||+||| +|||+|||+||++||++.|+++|+||+|++|+++++.|+|||+++++|+++|+|+++.+
T Consensus        60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d  139 (431)
T PLN02218         60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQK  139 (431)
T ss_pred             cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCC
Confidence            44567889999999999999 99999999999878988887899999997799999999999999999999999999999


Q ss_pred             cCCCCCCCceeEEEeeeecEEEEec--eEEeCCCccccccccc-------CCCceeEEEEccCcEEEEeEEEEcCCCceE
Q 043061          121 LSDYSRDPRHWLVFENVNNFRVEGG--GTIDGNGKVWWRKSCK-------VNKSLAVTFYGCKNVRVSSLRFRNSQKMHL  191 (299)
Q Consensus       121 ~~~~~~~~~~~i~~~~~~ni~I~G~--G~idG~g~~~w~~~~~-------~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i  191 (299)
                      +.+|+. ...|+.+.+++||+|+|.  |+|||+|+.||...+.       ..+|.+|.|.+|+|++|++++++|+|+|++
T Consensus       140 ~~~y~~-~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i  218 (431)
T PLN02218        140 RSDYKD-ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQI  218 (431)
T ss_pred             hhhccc-cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEE
Confidence            998853 457999999999999996  9999999999987542       236779999999999999999999999999


Q ss_pred             EEeceeeEEEEeEEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCceEEEeecCCCC
Q 043061          192 TFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGN  271 (299)
Q Consensus       192 ~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~Gi~igs~~~~~  271 (299)
                      ++..|+||+|+|++|.+|.+++|+||||+++|+||+|+||+|.+|||||+|+++++||+|+||+|.++|||+|||+|.+.
T Consensus       219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~  298 (431)
T PLN02218        219 SIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDN  298 (431)
T ss_pred             EEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CcccEEEEEEEeeEEeCCceeEEEEecC
Q 043061          272 SEAFVSNVLVNRARLSGTTNGVRIKTWQ  299 (299)
Q Consensus       272 ~~~~v~nv~i~n~~~~~~~~gi~ik~~~  299 (299)
                      ..+.|+||+|+||+|.++.+|+||||||
T Consensus       299 ~~~~V~nV~v~n~~~~~t~nGvRIKT~~  326 (431)
T PLN02218        299 SKAFVSGVTVDGAKLSGTDNGVRIKTYQ  326 (431)
T ss_pred             CCceEEEEEEEccEEecCCcceEEeecC
Confidence            7789999999999999999999999996

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PRK09752 adhesin; Provisional Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 1e-13
1nhc_A 336 Structural Insights Into The Processivity Of Endopo 1e-11
3jur_A 448 The Crystal Structure Of A Hyperthermoactive Exopol 7e-10
2iq7_A 339 Crystal Structure Of The Polygalacturonase From Col 3e-09
1k5c_A 335 Endopolygalacturonase I From Stereum Purpureum At 0 3e-09
1hg8_A 349 Endopolygalacturonase From The Phytopathogenic Fung 2e-08
1czf_A 362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 3e-07
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 8e-07
1rmg_A 422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 1e-06
2uve_A 608 Structure Of Yersinia Enterocolitica Family 28 Exop 2e-04
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 81/179 (45%), Gaps = 25/179 (13%)
Query: 139 NFRVEGGGTIDGNGKV--------WWR-------KSCKVNKSLAVTFYGCKNVRVSSLRF 183
           N  + G GTIDG G V        WW        K  K N    +     KN  + ++  
Sbjct: 110 NSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSL 169
Query: 184 RNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIV 243
            NS   H+ F       A    +  P  + NTDGI    ++NI I    I TGDD ++I 
Sbjct: 170 INSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIK 229
Query: 244 S--GSKNVRATDII---CGPGHGISIGSLGAGNSEAFVSNVLVNRARLSGTTNGVRIKT 297
           +  G    R   I+    G GHG+SIGS   G     V NV V+  +++GTTNG+RIK+
Sbjct: 230 AYKGRAETRNISILHNDFGTGHGMSIGSETMG-----VYNVTVDDLKMNGTTNGLRIKS 283
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query299
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 3e-89
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 6e-89
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 5e-81
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-73
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 2e-73
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 4e-68
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 4e-68
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 6e-68
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 5e-66
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 3e-65
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-35
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 2e-32
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 1e-23
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 2e-19
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 3e-19
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 9e-14
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 4e-08
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  271 bits (694), Expect = 3e-89
 Identities = 54/260 (20%), Positives = 101/260 (38%), Gaps = 16/260 (6%)

Query: 40  ASAPASSTKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPIT 98
           +++   +TK  N+  + A AD  TD   A   AW  AC S    ++ +P+        +T
Sbjct: 11  SASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSG--GLVYIPSGNYALNTWVT 67

Query: 99  FSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRK 158
            +G   + +   + G I  +      S +        +   F     G + G G V+  +
Sbjct: 68  LTGGSATAIQ--LDGIIYRT---GTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAE 122

Query: 159 SCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGI 218
                + L        +  V  +   ++   H T   C +    N+ +    N    DGI
Sbjct: 123 GTYGARIL--RLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGI 179

Query: 219 HVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSN 278
            V G+ NI + +  +   D+C+++ S + N+    I C    G ++GSLGA      V++
Sbjct: 180 DVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTD 235

Query: 279 VLVNRARLSGTTNGVRIKTW 298
           ++        +     IK+ 
Sbjct: 236 IVYRNVYTWSSNQMYMIKSN 255
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 100.0
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.88
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.75
2inu_A 410 Insulin fructotransferase; right-handed parallel b 99.71
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.71
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.7
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.7
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.69
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.68
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.66
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.63
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.58
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.57
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.57
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.47
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.42
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.28
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.27
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.21
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.14
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 98.98
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.8
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.76
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 98.75
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 98.74
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.74
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.74
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.73
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.71
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.67
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.6
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.53
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.52
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.49
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 98.46
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 98.4
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.36
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.35
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.32
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.16
2inu_A 410 Insulin fructotransferase; right-handed parallel b 98.14
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.13
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.04
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 98.03
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.02
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.82
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.72
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 97.54
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.42
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.25
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.11
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.0
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 96.88
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.86
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.85
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.03
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 93.59
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 93.41
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 93.24
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.13
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 89.93
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 89.05
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 88.29
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 83.95
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 83.11
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=8.7e-58  Score=434.78  Aligned_cols=253  Identities=30%  Similarity=0.476  Sum_probs=230.4

Q ss_pred             hhhcCCCCCCCCCeEEEeecCCCCCCC-cccHHHHHHHHHHHhhcCCccEEEecCCeeEEeeeeeeeCCCccceEEEEee
Q 043061           35 RLYGRASAPASSTKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPITFSGPCKSDLTMKIYG  113 (299)
Q Consensus        35 ~~~~~~~~~~~~~~~~~v~d~Ga~gdg-~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~~~l~l~~p~~snvtl~~~g  113 (299)
                      .++.++.+|.+++++++|++|||+||| +|||+|||+||+ +|++.|+++|+||+| +|+++||.|    +++++|+++|
T Consensus        13 ~i~~~~~~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~-~c~~~ggg~v~vP~G-~yl~~~l~l----~s~v~l~l~g   86 (448)
T 3jur_A           13 EILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIE-ELSKQGGGRLIVPEG-VFLTGPIHL----KSNIELHVKG   86 (448)
T ss_dssp             HHHHHCCCCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHH-HHHHHTCEEEEECSS-EEEESCEEC----CTTEEEEESS
T ss_pred             HHHhhccCCCCCCcEEEEEecccCCCCCeecHHHHHHHHH-hhhhcCCeEEEECCC-cEEEeeeEe----CCCcEEEEEE
Confidence            466778888899999999999999999 999999999996 566555689999999 999999999    8999999999


Q ss_pred             EEEEeeccCCC-CCC-----------CceeEEEeeeecEEEEeceEEeCCC--ccccccccc------------------
Q 043061          114 TIKASVRLSDY-SRD-----------PRHWLVFENVNNFRVEGGGTIDGNG--KVWWRKSCK------------------  161 (299)
Q Consensus       114 ~l~~~~~~~~~-~~~-----------~~~~i~~~~~~ni~I~G~G~idG~g--~~~w~~~~~------------------  161 (299)
                      +|+++.++.+| +..           ..+||++.+++||+|+|.|+|||+|  +.||+....                  
T Consensus        87 tL~~s~d~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~  166 (448)
T 3jur_A           87 TIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKK  166 (448)
T ss_dssp             EEEECCCGGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHH
T ss_pred             EEEecCCHHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhh
Confidence            99999999988 321           2368999999999999999999999  889974320                  


Q ss_pred             --------------------CCCceeEEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEeEEEECCCCCCCCCeeeee
Q 043061          162 --------------------VNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGIHVT  221 (299)
Q Consensus       162 --------------------~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~~~I~~~~~~~~~DGi~~~  221 (299)
                                          ..+|.+|.|.+|+|++|++++++|+|+|++++..|+|++|+|++|.++  ++|+||||+.
T Consensus       167 l~~~~~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~  244 (448)
T 3jur_A          167 LKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPE  244 (448)
T ss_dssp             HHHHHHHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCB
T ss_pred             hhhhhcccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCcccccc
Confidence                                235679999999999999999999999999999999999999999997  6899999999


Q ss_pred             ceecEEEEeeEEEcCCccEEecCC-----------cEeEEEEeeEE--cCCc-eEEEeecCCCCCcccEEEEEEEeeEEe
Q 043061          222 GTQNILIKNCVIRTGDDCISIVSG-----------SKNVRATDIIC--GPGH-GISIGSLGAGNSEAFVSNVLVNRARLS  287 (299)
Q Consensus       222 ~s~~v~I~n~~i~~gDD~iai~sg-----------s~ni~I~n~~~--~~~~-Gi~igs~~~~~~~~~v~nv~i~n~~~~  287 (299)
                      +|++|+|+||+|.+|||||+++++           ++||+|+||+|  .++| ||+|||++.++    |+||+|+||+|.
T Consensus       245 ~s~nV~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~----v~nV~v~n~~~~  320 (448)
T 3jur_A          245 SCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGG----VRNVVARNNVYM  320 (448)
T ss_dssp             SCEEEEEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTC----EEEEEEESCEEE
T ss_pred             CCcCEEEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCc----EEEEEEEEEEEe
Confidence            999999999999999999999998           89999999999  7787 89999998765    999999999999


Q ss_pred             CCceeEEEEecC
Q 043061          288 GTTNGVRIKTWQ  299 (299)
Q Consensus       288 ~~~~gi~ik~~~  299 (299)
                      ++.+|+|||||+
T Consensus       321 ~t~~GirIKt~~  332 (448)
T 3jur_A          321 NVERALRLKTNS  332 (448)
T ss_dssp             SCSEEEEEECCT
T ss_pred             cccceEEEEEEc
Confidence            999999999995
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 299
d1rmga_ 422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 7e-54
d1ogmx2 373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 1e-47
d1czfa_ 335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-47
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 8e-40
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-38
d1k5ca_ 333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 1e-37
d1nhca_ 336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-34
d1hg8a_ 349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 5e-34
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  179 bits (454), Expect = 7e-54
 Identities = 53/260 (20%), Positives = 99/260 (38%), Gaps = 16/260 (6%)

Query: 40  ASAPASSTKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHLKPIT 98
           +++   +TK  N+  + A AD  TD   A   AW  AC S    ++ +P+        +T
Sbjct: 11  SASTKGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSG--GLVYIPSGNYALNTWVT 67

Query: 99  FSGPCKSDLTMKIYGTIKASVRLSDYSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRK 158
            +G   + +  ++ G I  +   S             +   F     G + G G V+  +
Sbjct: 68  LTGGSATAI--QLDGIIYRTGTASGN---MIAVTDTTDFELFSSTSKGAVQGFGYVYHAE 122

Query: 159 SCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALNLLVIAPGNSPNTDGI 218
                + L        +  V  +   ++   H T   C +    N+ +    N    DGI
Sbjct: 123 GTYGARIL--RLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGI 179

Query: 219 HVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSN 278
            V    NI + +  +   D+C+++ S + N+    I C    G ++GSLGA      V++
Sbjct: 180 DV-WGSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VTD 235

Query: 279 VLVNRARLSGTTNGVRIKTW 298
           ++        +     IK+ 
Sbjct: 236 IVYRNVYTWSSNQMYMIKSN 255
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query299
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_ 333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.69
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.65
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.64
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.62
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.6
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.59
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.44
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.41
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.31
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.68
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.67
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.35
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 98.34
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.29
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.17
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.16
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.13
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.94
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.93
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.86
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.75
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.51
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.29
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.25
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.3
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.68
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 94.55
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 93.74
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 91.02
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 90.51
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 89.39
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 83.05
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=1.2e-48  Score=367.91  Aligned_cols=237  Identities=24%  Similarity=0.379  Sum_probs=207.1

Q ss_pred             CCeEEEeecCCCCCCC-cccHHHHHHHHHHHhhcCCccEEEecCCeeEEe-eeeeeeCCCccceEEEEeeEEEEeeccCC
Q 043061           46 STKIVNVDDFEAKADG-TDDSKAFMEAWEEACSSENEAVLVVPNNKIYHL-KPITFSGPCKSDLTMKIYGTIKASVRLSD  123 (299)
Q Consensus        46 ~~~~~~v~d~Ga~gdg-~Ddt~Aiq~Ai~~a~~~~gg~~v~iP~G~~Y~~-~~l~l~~p~~snvtl~~~g~l~~~~~~~~  123 (299)
                      ..+++||+||||+||| +|||+|||+||+ ||+.+  ++|+||+| +|++ .+|.|++  ++++.|+++|+|.+..+...
T Consensus        17 ~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~~g--g~V~iP~G-ty~l~~~i~l~g--~~~~~l~~~G~i~~~~~~~~   90 (422)
T d1rmga_          17 ATKTCNILSYGAVADNSTDVGPAITSAWA-ACKSG--GLVYIPSG-NYALNTWVTLTG--GSATAIQLDGIIYRTGTASG   90 (422)
T ss_dssp             HHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHTBT--CEEEECSS-EEEECSCEEEES--CEEEEEEECSEEEECCCCSS
T ss_pred             CCcEEEEecCCCCCCCCccCHHHHHHHHH-hcCCC--CEEEECCC-cEEEeCcEEEcC--CCceEEEEeEEEEeccCCcc
Confidence            4679999999999999 999999999995 78653  59999999 8866 5699988  56889999999988865543


Q ss_pred             CCCCCceeEEEeeeecEEEEeceEEeCCCcccccccccCCCceeEEEEccCcEEEEeEEEEcCCCceEEEeceeeEEEEe
Q 043061          124 YSRDPRHWLVFENVNNFRVEGGGTIDGNGKVWWRKSCKVNKSLAVTFYGCKNVRVSSLRFRNSQKMHLTFQYCVNVRALN  203 (299)
Q Consensus       124 ~~~~~~~~i~~~~~~ni~I~G~G~idG~g~~~w~~~~~~~~~~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~s~nv~i~~  203 (299)
                      +   ...+........+.+.|.|+|||+|..||....  .++.+|.|.+|+|++|++++++|+|.||+.+..|++++|+|
T Consensus        91 ~---~~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~~--~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~v~i~n  165 (422)
T d1rmga_          91 N---MIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGT--YGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYN  165 (422)
T ss_dssp             E---EEEEEEEEEEEEECSSSCCEEECCTHHHHTTTC--CCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEEEEEEE
T ss_pred             C---EEEeccCccEEEEEeecceEEecCcceecCCCC--CCCcEEEEEeeeeeEEECcEecCCCceEEEEeccccEEEEe
Confidence            2   122334445566677889999999999997543  34568999999999999999999999999999999999999


Q ss_pred             EEEECCCCCCCCCeeeeeceecEEEEeeEEEcCCccEEecCCcEeEEEEeeEEcCCceEEEeecCCCCCcccEEEEEEEe
Q 043061          204 LLVIAPGNSPNTDGIHVTGTQNILIKNCVIRTGDDCISIVSGSKNVRATDIICGPGHGISIGSLGAGNSEAFVSNVLVNR  283 (299)
Q Consensus       204 ~~I~~~~~~~~~DGi~~~~s~~v~I~n~~i~~gDD~iai~sgs~ni~I~n~~~~~~~Gi~igs~~~~~~~~~v~nv~i~n  283 (299)
                      ++|.++ +.+|+||||+.++ +|+|+||++.++||||+++++++||+|+|++|.++||++|||++..   ..|+||+|+|
T Consensus       166 v~I~~~-~~~NtDGIdi~~s-nv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~~---~~V~nV~v~n  240 (422)
T d1rmga_         166 MAIRGG-NEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TDVTDIVYRN  240 (422)
T ss_dssp             EEEECC-SSTTCCSEEEEEE-EEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECTT---EEEEEEEEEE
T ss_pred             eEEcCC-CCCccceEeeccc-EEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccCC---CCEEEEEEEe
Confidence            999986 5689999999765 8999999999999999999999999999999999999999999764   4699999999


Q ss_pred             eEEeCCceeEEEEec
Q 043061          284 ARLSGTTNGVRIKTW  298 (299)
Q Consensus       284 ~~~~~~~~gi~ik~~  298 (299)
                      |++.++.+|+|||+|
T Consensus       241 ~~~~~s~~g~~ik~~  255 (422)
T d1rmga_         241 VYTWSSNQMYMIKSN  255 (422)
T ss_dssp             EEEESSSCSEEEEEB
T ss_pred             EEEeCCCceEEEEEc
Confidence            999999999999998
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure